Query 036738
Match_columns 364
No_of_seqs 272 out of 2469
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7.2E-61 1.6E-65 503.8 35.2 354 1-364 1-365 (1153)
2 PLN03194 putative disease resi 100.0 2.2E-37 4.8E-42 250.7 14.6 158 5-180 18-177 (187)
3 PF00931 NB-ARC: NB-ARC domain 99.9 4E-26 8.7E-31 207.2 13.3 166 193-364 1-171 (287)
4 KOG4658 Apoptotic ATPase [Sign 99.9 3.5E-24 7.5E-29 216.8 13.8 166 191-364 161-331 (889)
5 smart00255 TIR Toll - interleu 99.8 3.7E-20 8E-25 149.6 11.3 137 13-152 1-138 (140)
6 PF01582 TIR: TIR domain; Int 99.8 4.7E-20 1E-24 148.9 2.9 132 16-148 1-139 (141)
7 PF13676 TIR_2: TIR domain; PD 99.7 9.2E-18 2E-22 127.8 2.3 87 16-110 1-87 (102)
8 PF05729 NACHT: NACHT domain 99.3 1.2E-11 2.6E-16 102.4 11.7 143 213-362 1-162 (166)
9 COG2256 MGS1 ATPase related to 99.3 1.3E-11 2.8E-16 111.5 11.1 145 184-361 20-174 (436)
10 PRK00411 cdc6 cell division co 99.3 7.9E-11 1.7E-15 111.8 15.8 172 186-362 28-219 (394)
11 TIGR02928 orc1/cdc6 family rep 99.3 2.3E-10 5E-15 107.5 16.5 173 185-362 12-211 (365)
12 PF01637 Arch_ATPase: Archaeal 99.2 1.4E-10 2.9E-15 101.7 10.9 166 190-361 1-202 (234)
13 PRK06893 DNA replication initi 99.1 1E-09 2.2E-14 95.9 10.9 122 211-363 38-174 (229)
14 PF13191 AAA_16: AAA ATPase do 99.0 9.1E-10 2E-14 92.9 6.4 51 189-239 1-51 (185)
15 PRK13342 recombination factor 99.0 8.2E-09 1.8E-13 98.3 12.9 146 184-362 8-163 (413)
16 KOG2028 ATPase related to the 98.9 5.2E-09 1.1E-13 93.5 10.0 150 183-361 133-292 (554)
17 TIGR03015 pepcterm_ATPase puta 98.9 3.6E-08 7.8E-13 88.5 15.6 142 211-361 42-203 (269)
18 PRK04841 transcriptional regul 98.9 1.9E-08 4.2E-13 105.6 15.3 165 183-361 9-197 (903)
19 PTZ00202 tuzin; Provisional 98.9 6.2E-08 1.4E-12 89.7 16.2 166 181-360 255-431 (550)
20 PTZ00112 origin recognition co 98.9 6.1E-08 1.3E-12 96.4 14.8 171 185-363 752-949 (1164)
21 cd00009 AAA The AAA+ (ATPases 98.8 4.7E-08 1E-12 78.7 11.8 45 191-238 1-45 (151)
22 PRK12402 replication factor C 98.8 3.5E-08 7.5E-13 91.6 12.5 172 184-361 11-195 (337)
23 PF13173 AAA_14: AAA domain 98.8 1.4E-08 3E-13 80.4 7.3 119 213-355 3-127 (128)
24 PF13401 AAA_22: AAA domain; P 98.8 3.8E-08 8.2E-13 78.1 9.8 114 211-332 3-125 (131)
25 PLN03025 replication factor C 98.8 4.9E-08 1.1E-12 89.8 11.9 156 184-361 9-169 (319)
26 TIGR00635 ruvB Holliday juncti 98.8 8.1E-09 1.8E-13 94.5 6.6 52 188-239 4-57 (305)
27 PRK07003 DNA polymerase III su 98.8 9.8E-08 2.1E-12 94.3 13.9 166 184-361 12-189 (830)
28 COG1474 CDC6 Cdc6-related prot 98.8 2E-07 4.3E-12 86.6 15.3 171 184-363 13-203 (366)
29 PRK14961 DNA polymerase III su 98.8 1.7E-07 3.7E-12 87.7 14.6 166 184-361 12-189 (363)
30 TIGR03420 DnaA_homol_Hda DnaA 98.8 8.3E-08 1.8E-12 83.8 11.4 141 187-361 14-170 (226)
31 KOG3678 SARM protein (with ste 98.8 2.1E-08 4.6E-13 92.0 7.7 94 9-109 608-709 (832)
32 PRK14963 DNA polymerase III su 98.8 6.7E-08 1.5E-12 93.5 11.5 168 184-361 10-186 (504)
33 PRK13341 recombination factor 98.7 5.9E-08 1.3E-12 97.5 11.0 145 184-362 24-180 (725)
34 PRK08727 hypothetical protein; 98.7 1.3E-07 2.9E-12 82.8 11.9 143 187-363 18-175 (233)
35 PRK14949 DNA polymerase III su 98.7 1.2E-07 2.6E-12 95.3 12.9 168 184-361 12-189 (944)
36 PRK00080 ruvB Holliday junctio 98.7 4.2E-08 9.2E-13 90.6 9.2 56 184-239 21-78 (328)
37 TIGR01242 26Sp45 26S proteasom 98.7 1.3E-07 2.7E-12 88.7 11.9 154 186-363 120-306 (364)
38 PRK14960 DNA polymerase III su 98.7 8.2E-08 1.8E-12 93.7 10.8 166 184-361 11-188 (702)
39 PF05496 RuvB_N: Holliday junc 98.7 2.1E-07 4.7E-12 79.0 11.9 149 183-363 19-192 (233)
40 PRK12323 DNA polymerase III su 98.7 1.6E-07 3.4E-12 91.6 12.4 170 184-361 12-194 (700)
41 PRK00440 rfc replication facto 98.7 3.5E-07 7.6E-12 84.2 14.1 157 184-362 13-173 (319)
42 PRK08084 DNA replication initi 98.7 1.9E-07 4.1E-12 81.9 11.6 141 188-363 22-180 (235)
43 COG2909 MalT ATP-dependent tra 98.7 2.8E-07 6.1E-12 91.0 13.3 166 183-362 14-206 (894)
44 PRK09087 hypothetical protein; 98.7 2.3E-07 5E-12 80.7 11.4 111 211-363 43-166 (226)
45 PRK14956 DNA polymerase III su 98.7 1.6E-07 3.6E-12 89.0 11.0 167 184-361 14-191 (484)
46 TIGR02639 ClpA ATP-dependent C 98.7 2.3E-07 5.1E-12 94.5 12.4 154 184-361 178-356 (731)
47 PRK07994 DNA polymerase III su 98.6 1.9E-07 4.1E-12 92.2 11.0 166 184-361 12-189 (647)
48 PRK07471 DNA polymerase III su 98.6 1.3E-06 2.8E-11 81.3 15.8 173 183-362 14-212 (365)
49 PRK14962 DNA polymerase III su 98.6 6.6E-07 1.4E-11 86.0 14.1 164 184-362 10-188 (472)
50 PRK05642 DNA replication initi 98.6 3.5E-07 7.6E-12 80.2 11.3 121 212-363 45-179 (234)
51 PRK14957 DNA polymerase III su 98.6 6.9E-07 1.5E-11 86.8 14.2 167 184-361 12-189 (546)
52 PRK07940 DNA polymerase III su 98.6 9.9E-07 2.1E-11 82.8 14.7 161 188-361 5-187 (394)
53 PRK04195 replication factor C 98.6 3.5E-07 7.5E-12 88.9 11.5 152 184-361 10-171 (482)
54 PRK14951 DNA polymerase III su 98.6 8.9E-07 1.9E-11 87.2 14.1 171 184-361 12-194 (618)
55 TIGR02397 dnaX_nterm DNA polym 98.6 1.2E-06 2.6E-11 82.0 14.4 168 184-361 10-187 (355)
56 TIGR02881 spore_V_K stage V sp 98.6 8.3E-07 1.8E-11 79.3 12.5 150 189-362 7-190 (261)
57 PRK05564 DNA polymerase III su 98.6 1.9E-06 4.1E-11 79.1 15.2 151 188-361 4-163 (313)
58 PRK08691 DNA polymerase III su 98.6 2.1E-07 4.5E-12 91.7 9.2 166 184-361 12-189 (709)
59 PF00308 Bac_DnaA: Bacterial d 98.6 6E-07 1.3E-11 77.8 11.2 130 210-363 32-179 (219)
60 TIGR03345 VI_ClpV1 type VI sec 98.6 4.1E-07 8.8E-12 93.6 11.7 153 184-360 183-360 (852)
61 PRK06645 DNA polymerase III su 98.5 1.9E-06 4.2E-11 83.2 14.3 164 184-362 17-199 (507)
62 PRK03992 proteasome-activating 98.5 1.7E-06 3.8E-11 81.6 13.7 152 187-362 130-314 (389)
63 PRK09112 DNA polymerase III su 98.5 9.5E-07 2.1E-11 81.8 11.5 168 183-361 18-211 (351)
64 PRK14964 DNA polymerase III su 98.5 8.1E-07 1.8E-11 85.2 11.1 166 184-361 9-186 (491)
65 PRK14958 DNA polymerase III su 98.5 1.3E-06 2.8E-11 84.9 12.6 164 184-359 12-187 (509)
66 TIGR00678 holB DNA polymerase 98.5 5.8E-06 1.3E-10 70.0 15.2 68 294-361 95-166 (188)
67 PRK05896 DNA polymerase III su 98.5 7.5E-07 1.6E-11 86.9 10.5 166 184-361 12-189 (605)
68 PRK07764 DNA polymerase III su 98.5 1.1E-06 2.4E-11 89.6 11.8 161 184-361 11-190 (824)
69 PHA02544 44 clamp loader, smal 98.5 1.8E-06 3.8E-11 79.5 12.0 149 184-360 17-170 (316)
70 CHL00095 clpC Clp protease ATP 98.5 1.2E-06 2.7E-11 90.3 11.9 150 187-360 178-351 (821)
71 PRK14969 DNA polymerase III su 98.5 1.8E-06 3.9E-11 84.4 12.4 166 184-361 12-189 (527)
72 PRK08903 DnaA regulatory inact 98.5 1.3E-06 2.8E-11 76.3 10.4 139 186-361 16-168 (227)
73 PRK10865 protein disaggregatio 98.5 2.1E-06 4.6E-11 88.6 13.1 52 184-238 174-225 (857)
74 PRK14955 DNA polymerase III su 98.4 9.2E-07 2E-11 83.8 9.1 171 184-361 12-197 (397)
75 PRK14970 DNA polymerase III su 98.4 6.3E-06 1.4E-10 77.5 14.7 154 184-361 13-178 (367)
76 PRK09111 DNA polymerase III su 98.4 1.5E-06 3.4E-11 85.6 10.8 171 184-361 20-202 (598)
77 TIGR03689 pup_AAA proteasome A 98.4 3.9E-06 8.5E-11 80.8 13.3 160 187-362 181-377 (512)
78 PF00004 AAA: ATPase family as 98.4 2.8E-06 6.1E-11 67.2 10.5 23 215-237 1-23 (132)
79 TIGR03346 chaperone_ClpB ATP-d 98.4 2.4E-06 5.1E-11 88.5 12.5 154 184-361 169-347 (852)
80 PRK14952 DNA polymerase III su 98.4 5.1E-06 1.1E-10 81.6 13.9 166 184-361 9-188 (584)
81 PRK14954 DNA polymerase III su 98.4 2.6E-06 5.7E-11 84.2 11.7 172 184-361 12-197 (620)
82 PRK14959 DNA polymerase III su 98.4 2E-06 4.4E-11 84.3 10.7 166 184-361 12-189 (624)
83 PRK11034 clpA ATP-dependent Cl 98.4 2.5E-06 5.4E-11 86.4 11.6 151 187-361 185-360 (758)
84 PRK14087 dnaA chromosomal repl 98.4 4.7E-06 1E-10 80.0 12.8 132 212-363 141-288 (450)
85 PF08937 DUF1863: MTH538 TIR-l 98.4 8.2E-07 1.8E-11 70.4 6.1 90 14-109 1-107 (130)
86 TIGR02903 spore_lon_C ATP-depe 98.4 1.3E-05 2.9E-10 79.8 15.8 50 184-236 150-199 (615)
87 TIGR02880 cbbX_cfxQ probable R 98.4 5.4E-06 1.2E-10 74.8 12.0 128 213-362 59-207 (284)
88 PRK14088 dnaA chromosomal repl 98.4 3.9E-06 8.5E-11 80.4 11.5 129 212-363 130-276 (440)
89 PRK12422 chromosomal replicati 98.3 5.1E-06 1.1E-10 79.5 12.1 129 213-363 142-284 (445)
90 cd01128 rho_factor Transcripti 98.3 5.6E-07 1.2E-11 79.2 5.2 92 211-305 15-113 (249)
91 PRK00149 dnaA chromosomal repl 98.3 7E-06 1.5E-10 79.2 13.1 131 211-363 147-293 (450)
92 PRK14950 DNA polymerase III su 98.3 4.5E-06 9.7E-11 82.9 11.7 167 184-361 12-190 (585)
93 TIGR00362 DnaA chromosomal rep 98.3 9.2E-06 2E-10 77.4 13.4 130 212-363 136-281 (405)
94 PF08357 SEFIR: SEFIR domain; 98.3 8.9E-07 1.9E-11 72.1 5.3 65 15-79 2-70 (150)
95 PRK06620 hypothetical protein; 98.3 2E-06 4.4E-11 74.1 7.8 106 213-362 45-159 (214)
96 PRK14953 DNA polymerase III su 98.3 1.7E-05 3.6E-10 76.7 14.7 167 184-361 12-189 (486)
97 CHL00181 cbbX CbbX; Provisiona 98.3 2.7E-05 5.9E-10 70.3 14.9 129 212-362 59-208 (287)
98 PTZ00454 26S protease regulato 98.3 1.4E-05 3E-10 75.3 13.2 151 187-361 144-327 (398)
99 PRK14086 dnaA chromosomal repl 98.3 1.7E-05 3.7E-10 77.6 14.0 129 213-363 315-459 (617)
100 PRK06305 DNA polymerase III su 98.3 1.9E-05 4E-10 75.9 13.9 167 184-361 13-191 (451)
101 KOG0744 AAA+-type ATPase [Post 98.3 2.5E-06 5.3E-11 75.5 7.1 134 211-361 176-338 (423)
102 PRK07133 DNA polymerase III su 98.3 1.8E-05 4E-10 78.9 14.0 164 184-361 14-188 (725)
103 PTZ00361 26 proteosome regulat 98.2 4.7E-06 1E-10 79.1 9.1 151 188-362 183-366 (438)
104 PRK08451 DNA polymerase III su 98.2 1.3E-05 2.8E-10 77.7 12.1 163 184-361 10-187 (535)
105 KOG2543 Origin recognition com 98.2 2.8E-05 6.1E-10 70.5 13.2 168 186-361 4-191 (438)
106 PRK05563 DNA polymerase III su 98.2 1.4E-05 3.1E-10 78.7 12.5 166 184-361 12-189 (559)
107 PRK09376 rho transcription ter 98.2 3.7E-06 8.1E-11 77.5 7.1 91 211-305 168-266 (416)
108 PRK06647 DNA polymerase III su 98.2 1.5E-05 3.3E-10 78.3 11.8 161 184-361 12-189 (563)
109 CHL00176 ftsH cell division pr 98.2 1.7E-05 3.7E-10 78.9 12.2 153 186-362 181-365 (638)
110 PRK14971 DNA polymerase III su 98.2 3.7E-05 8E-10 76.5 14.2 164 184-361 13-191 (614)
111 PRK14948 DNA polymerase III su 98.2 4.1E-05 9E-10 76.2 14.4 167 184-360 12-190 (620)
112 TIGR01241 FtsH_fam ATP-depende 98.2 3E-05 6.4E-10 75.8 13.2 153 186-362 53-237 (495)
113 PRK14965 DNA polymerase III su 98.2 2.7E-05 5.8E-10 77.1 13.0 165 184-360 12-188 (576)
114 PRK08116 hypothetical protein; 98.2 1.1E-05 2.4E-10 72.1 9.1 102 213-333 115-221 (268)
115 COG1222 RPT1 ATP-dependent 26S 98.1 3E-05 6.4E-10 69.9 11.6 145 191-360 154-332 (406)
116 TIGR00767 rho transcription te 98.1 4.3E-06 9.2E-11 77.5 6.4 94 210-306 166-266 (415)
117 smart00382 AAA ATPases associa 98.1 1.5E-05 3.2E-10 63.4 8.9 28 213-240 3-30 (148)
118 PRK07399 DNA polymerase III su 98.1 4.6E-05 9.9E-10 69.6 13.0 167 188-362 4-194 (314)
119 PRK12377 putative replication 98.1 9.4E-05 2E-09 65.1 14.3 36 212-247 101-136 (248)
120 PRK08058 DNA polymerase III su 98.1 8.3E-05 1.8E-09 68.6 14.4 157 189-361 6-180 (329)
121 COG3899 Predicted ATPase [Gene 98.1 1.1E-05 2.4E-10 83.1 9.5 50 190-239 2-51 (849)
122 PRK08181 transposase; Validate 98.1 2.5E-05 5.3E-10 69.6 10.0 34 213-246 107-140 (269)
123 PRK07952 DNA replication prote 98.1 0.00017 3.6E-09 63.4 15.0 49 197-246 85-133 (244)
124 PRK05707 DNA polymerase III su 98.1 0.00012 2.6E-09 67.3 14.3 67 295-361 106-176 (328)
125 COG0593 DnaA ATPase involved i 98.1 6E-05 1.3E-09 70.3 12.2 130 211-363 112-257 (408)
126 PF05673 DUF815: Protein of un 98.0 5E-05 1.1E-09 65.6 10.5 53 184-239 23-79 (249)
127 PRK06526 transposase; Provisio 98.0 1.7E-05 3.7E-10 70.2 7.6 27 212-238 98-124 (254)
128 cd03223 ABCD_peroxisomal_ALDP 98.0 3.3E-05 7.1E-10 64.0 8.8 129 211-347 26-160 (166)
129 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.3E-09 75.2 14.2 51 187-237 453-509 (731)
130 KOG0989 Replication factor C, 98.0 5.1E-05 1.1E-09 67.0 10.0 159 183-360 31-198 (346)
131 TIGR00602 rad24 checkpoint pro 98.0 3.7E-05 8E-10 76.2 10.2 55 183-237 79-135 (637)
132 COG3903 Predicted ATPase [Gene 98.0 2.3E-06 4.9E-11 78.5 1.6 141 210-362 12-154 (414)
133 PF13177 DNA_pol3_delta2: DNA 98.0 0.00011 2.3E-09 60.6 11.3 144 192-351 1-162 (162)
134 TIGR03346 chaperone_ClpB ATP-d 98.0 0.00014 3E-09 75.6 14.6 53 187-239 564-622 (852)
135 PRK10536 hypothetical protein; 98.0 0.00011 2.3E-09 64.3 11.5 49 188-241 55-105 (262)
136 PRK10865 protein disaggregatio 98.0 0.0002 4.2E-09 74.3 15.3 52 187-238 567-624 (857)
137 PRK09183 transposase/IS protei 98.0 3.2E-05 7E-10 68.8 8.4 27 212-238 102-128 (259)
138 TIGR01243 CDC48 AAA family ATP 98.0 8.3E-05 1.8E-09 76.2 12.5 52 188-239 178-239 (733)
139 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.0 4.3E-05 9.4E-10 61.6 8.4 113 211-347 25-140 (144)
140 cd03214 ABC_Iron-Siderophores_ 98.0 4.4E-05 9.5E-10 64.1 8.6 135 211-347 24-171 (180)
141 PF05621 TniB: Bacterial TniB 97.9 8.5E-05 1.8E-09 66.3 10.5 119 188-307 34-157 (302)
142 COG2255 RuvB Holliday junction 97.9 5.8E-05 1.3E-09 66.0 9.1 56 184-239 22-79 (332)
143 PF14516 AAA_35: AAA-like doma 97.9 0.00063 1.4E-08 62.9 16.5 175 184-362 7-213 (331)
144 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00012 2.5E-09 75.8 12.5 52 188-239 566-623 (852)
145 cd01131 PilT Pilus retraction 97.9 4E-05 8.8E-10 65.4 7.8 113 213-338 2-114 (198)
146 COG0466 Lon ATP-dependent Lon 97.9 0.00011 2.3E-09 72.0 11.3 158 188-362 323-507 (782)
147 TIGR01243 CDC48 AAA family ATP 97.9 0.00012 2.6E-09 75.0 12.5 150 188-361 453-633 (733)
148 PF01695 IstB_IS21: IstB-like 97.9 1.9E-05 4.1E-10 66.0 5.5 36 212-247 47-82 (178)
149 COG0542 clpA ATP-binding subun 97.9 9.8E-05 2.1E-09 73.9 11.0 120 187-318 490-618 (786)
150 KOG0741 AAA+-type ATPase [Post 97.9 0.00021 4.5E-09 67.6 12.4 125 210-361 536-684 (744)
151 PRK11034 clpA ATP-dependent Cl 97.9 0.0002 4.3E-09 72.8 13.3 50 188-237 458-513 (758)
152 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00012 2.7E-09 70.6 11.2 152 187-362 227-404 (489)
153 cd03228 ABCC_MRP_Like The MRP 97.9 9.1E-05 2E-09 61.6 8.9 130 211-347 27-167 (171)
154 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00016 3.6E-09 69.4 11.4 95 187-305 189-292 (802)
155 cd03222 ABC_RNaseL_inhibitor T 97.9 6.1E-05 1.3E-09 62.8 7.8 107 211-338 24-137 (177)
156 cd03238 ABC_UvrA The excision 97.8 9.9E-05 2.1E-09 61.5 8.8 129 210-347 19-161 (176)
157 PRK09361 radB DNA repair and r 97.8 4.1E-05 8.9E-10 66.8 6.8 49 198-247 10-58 (225)
158 PRK06921 hypothetical protein; 97.8 0.00011 2.3E-09 65.6 9.5 36 212-247 117-153 (266)
159 PRK13531 regulatory ATPase Rav 97.8 8.5E-05 1.8E-09 70.7 9.0 47 187-238 19-65 (498)
160 cd01120 RecA-like_NTPases RecA 97.8 0.00012 2.6E-09 59.9 9.0 33 215-247 2-34 (165)
161 cd03247 ABCC_cytochrome_bd The 97.8 0.00012 2.6E-09 61.3 9.0 126 211-347 27-169 (178)
162 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00038 8.2E-09 62.2 12.7 24 214-237 23-46 (262)
163 PF07728 AAA_5: AAA domain (dy 97.8 1.5E-05 3.2E-10 63.9 3.2 22 215-236 2-23 (139)
164 PF04665 Pox_A32: Poxvirus A32 97.8 0.00011 2.4E-09 63.8 8.6 36 212-247 13-48 (241)
165 PRK11331 5-methylcytosine-spec 97.8 9.2E-05 2E-09 69.9 8.4 55 188-247 175-231 (459)
166 TIGR02858 spore_III_AA stage I 97.8 0.00015 3.2E-09 64.7 9.3 115 212-337 111-233 (270)
167 COG1136 SalX ABC-type antimicr 97.8 0.00016 3.6E-09 62.0 9.1 62 282-347 147-215 (226)
168 COG1484 DnaC DNA replication p 97.8 0.0001 2.2E-09 65.3 8.1 74 211-305 104-177 (254)
169 TIGR02237 recomb_radB DNA repa 97.8 4.9E-05 1.1E-09 65.4 6.0 44 203-247 4-47 (209)
170 PF13604 AAA_30: AAA domain; P 97.8 0.00019 4.2E-09 61.0 9.5 114 196-332 6-130 (196)
171 cd01393 recA_like RecA is a b 97.8 0.00019 4.1E-09 62.5 9.8 49 198-247 6-60 (226)
172 PRK08769 DNA polymerase III su 97.8 0.0011 2.4E-08 60.6 14.9 68 294-361 112-183 (319)
173 KOG2227 Pre-initiation complex 97.8 0.0005 1.1E-08 64.2 12.6 172 185-362 147-337 (529)
174 TIGR02012 tigrfam_recA protein 97.8 0.00014 3.1E-09 66.1 9.1 98 197-305 40-143 (321)
175 PRK12608 transcription termina 97.8 0.00017 3.6E-09 66.6 9.5 101 200-305 123-230 (380)
176 COG0488 Uup ATPase components 97.8 0.0025 5.3E-08 62.3 18.1 134 212-349 348-511 (530)
177 PHA00729 NTP-binding motif con 97.8 0.00028 6.1E-09 60.7 10.3 26 212-237 17-42 (226)
178 cd03216 ABC_Carb_Monos_I This 97.7 2.7E-05 5.9E-10 64.2 3.9 127 211-347 25-155 (163)
179 PRK00771 signal recognition pa 97.7 0.0012 2.7E-08 62.8 15.5 29 211-239 94-122 (437)
180 COG0470 HolB ATPase involved i 97.7 0.00043 9.3E-09 63.8 12.3 142 190-353 3-171 (325)
181 PRK06871 DNA polymerase III su 97.7 0.0015 3.2E-08 59.8 15.3 155 198-361 12-177 (325)
182 TIGR00763 lon ATP-dependent pr 97.7 0.00038 8.3E-09 71.7 12.8 52 189-240 321-375 (775)
183 PRK09354 recA recombinase A; P 97.7 0.00016 3.4E-09 66.5 8.9 99 197-305 45-148 (349)
184 PRK14974 cell division protein 97.7 0.0015 3.3E-08 60.0 15.4 30 210-239 138-167 (336)
185 KOG0734 AAA+-type ATPase conta 97.7 0.00029 6.2E-09 66.7 10.5 49 188-236 304-361 (752)
186 PRK04296 thymidine kinase; Pro 97.7 9.4E-05 2E-09 62.7 6.8 112 213-334 3-117 (190)
187 COG1373 Predicted ATPase (AAA+ 97.7 0.00041 8.9E-09 65.6 11.7 118 214-358 39-162 (398)
188 PRK06835 DNA replication prote 97.7 8.4E-05 1.8E-09 68.2 6.7 35 213-247 184-218 (329)
189 PRK06964 DNA polymerase III su 97.7 0.00012 2.7E-09 67.3 7.7 68 294-361 131-202 (342)
190 cd03246 ABCC_Protease_Secretio 97.7 0.00012 2.6E-09 61.0 7.1 130 211-347 27-168 (173)
191 COG2812 DnaX DNA polymerase II 97.7 0.00018 3.9E-09 69.2 9.1 161 184-361 12-189 (515)
192 cd01394 radB RadB. The archaea 97.7 9.1E-05 2E-09 64.2 6.5 50 197-247 5-54 (218)
193 PLN00020 ribulose bisphosphate 97.7 0.00016 3.6E-09 66.1 8.1 30 210-239 146-175 (413)
194 COG0542 clpA ATP-binding subun 97.7 0.00015 3.3E-09 72.6 8.6 156 186-360 168-343 (786)
195 COG4133 CcmA ABC-type transpor 97.7 0.0002 4.4E-09 58.9 7.8 34 212-246 28-61 (209)
196 PRK07993 DNA polymerase III su 97.7 0.0017 3.7E-08 59.9 14.9 157 197-361 11-178 (334)
197 KOG0991 Replication factor C, 97.7 0.00011 2.3E-09 62.5 6.3 52 184-238 23-74 (333)
198 PRK08939 primosomal protein Dn 97.7 0.0003 6.5E-09 64.0 9.7 100 211-332 155-260 (306)
199 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00019 4.2E-09 62.9 8.2 49 198-247 6-60 (235)
200 PF02562 PhoH: PhoH-like prote 97.7 0.00018 3.9E-09 61.1 7.6 115 213-332 20-155 (205)
201 cd03230 ABC_DR_subfamily_A Thi 97.7 0.00029 6.3E-09 58.7 8.8 127 211-347 25-168 (173)
202 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00011 2.4E-09 65.1 6.4 93 211-306 68-174 (274)
203 COG2884 FtsE Predicted ATPase 97.6 0.00037 7.9E-09 57.6 8.8 58 281-340 141-204 (223)
204 PF13207 AAA_17: AAA domain; P 97.6 4.7E-05 1E-09 59.3 3.6 23 214-236 1-23 (121)
205 PRK10787 DNA-binding ATP-depen 97.6 0.00028 6.1E-09 72.2 10.1 52 188-239 322-376 (784)
206 CHL00095 clpC Clp protease ATP 97.6 0.00037 7.9E-09 72.3 11.0 52 187-238 508-565 (821)
207 TIGR02902 spore_lonB ATP-depen 97.6 0.0003 6.6E-09 69.1 9.9 49 185-236 62-110 (531)
208 PF07693 KAP_NTPase: KAP famil 97.6 0.0023 5E-08 59.0 15.3 46 194-239 2-47 (325)
209 PRK06067 flagellar accessory p 97.6 0.00021 4.6E-09 62.7 7.7 50 197-247 11-60 (234)
210 KOG0730 AAA+-type ATPase [Post 97.6 0.00026 5.6E-09 68.7 8.8 130 210-363 466-615 (693)
211 cd03217 ABC_FeS_Assembly ABC-t 97.6 0.00021 4.6E-09 61.1 7.3 124 210-337 24-168 (200)
212 PRK08699 DNA polymerase III su 97.6 0.001 2.2E-08 61.1 12.1 67 295-361 113-183 (325)
213 PRK06696 uridine kinase; Valid 97.6 8.4E-05 1.8E-09 64.7 4.8 46 193-238 3-48 (223)
214 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 0.00027 5.8E-09 61.7 7.7 51 285-337 147-203 (254)
215 cd03237 ABC_RNaseL_inhibitor_d 97.6 0.0006 1.3E-08 60.2 10.2 27 211-237 24-50 (246)
216 PRK11889 flhF flagellar biosyn 97.6 0.0009 2E-08 62.2 11.4 30 210-239 239-268 (436)
217 PRK13543 cytochrome c biogenes 97.6 0.00064 1.4E-08 58.8 10.1 26 211-236 36-61 (214)
218 COG1124 DppF ABC-type dipeptid 97.6 0.00056 1.2E-08 58.8 9.3 52 286-339 150-208 (252)
219 PRK13539 cytochrome c biogenes 97.6 0.00069 1.5E-08 58.2 10.1 63 288-353 138-204 (207)
220 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00043 9.3E-09 60.9 8.9 50 197-247 7-56 (237)
221 PF00448 SRP54: SRP54-type pro 97.6 0.00035 7.6E-09 59.4 8.0 28 212-239 1-28 (196)
222 PRK04328 hypothetical protein; 97.6 0.00039 8.3E-09 61.6 8.6 49 198-247 10-58 (249)
223 PRK06090 DNA polymerase III su 97.6 0.0041 8.9E-08 56.8 15.4 68 294-361 107-178 (319)
224 smart00763 AAA_PrkA PrkA AAA d 97.6 9.5E-05 2E-09 67.9 4.8 51 188-238 51-104 (361)
225 PRK10733 hflB ATP-dependent me 97.5 0.00044 9.6E-09 69.6 9.8 126 213-362 186-334 (644)
226 COG4608 AppF ABC-type oligopep 97.5 0.00029 6.4E-09 61.6 7.4 128 210-339 37-176 (268)
227 cd00983 recA RecA is a bacter 97.5 0.0003 6.6E-09 64.1 7.8 99 197-305 40-143 (325)
228 KOG2004 Mitochondrial ATP-depe 97.5 0.00021 4.6E-09 69.9 7.0 52 189-240 412-466 (906)
229 PF13671 AAA_33: AAA domain; P 97.5 8.9E-05 1.9E-09 59.5 3.9 24 214-237 1-24 (143)
230 COG3267 ExeA Type II secretory 97.5 0.0021 4.5E-08 55.7 12.3 146 210-361 49-211 (269)
231 cd01129 PulE-GspE PulE/GspE Th 97.5 0.00056 1.2E-08 61.0 9.3 118 196-334 68-185 (264)
232 cd03232 ABC_PDR_domain2 The pl 97.5 0.00058 1.3E-08 57.9 9.0 25 211-235 32-56 (192)
233 COG1618 Predicted nucleotide k 97.5 0.0001 2.2E-09 59.1 4.0 36 212-247 5-41 (179)
234 cd03229 ABC_Class3 This class 97.5 0.00032 7E-09 58.7 7.3 132 211-347 25-174 (178)
235 cd03240 ABC_Rad50 The catalyti 97.5 0.00064 1.4E-08 58.3 9.1 59 288-348 132-196 (204)
236 TIGR00064 ftsY signal recognit 97.5 0.0021 4.5E-08 57.6 12.7 30 210-239 70-99 (272)
237 TIGR01420 pilT_fam pilus retra 97.5 0.00031 6.7E-09 65.3 7.6 112 212-336 122-233 (343)
238 cd03215 ABC_Carb_Monos_II This 97.5 0.00063 1.4E-08 57.2 8.8 27 211-237 25-51 (182)
239 COG2607 Predicted ATPase (AAA+ 97.5 0.003 6.5E-08 54.2 12.5 56 184-242 56-115 (287)
240 COG1120 FepC ABC-type cobalami 97.5 0.00045 9.8E-09 60.6 7.7 27 210-236 26-52 (258)
241 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00029 6.4E-09 57.6 6.2 125 212-347 25-153 (157)
242 cd03235 ABC_Metallic_Cations A 97.5 0.00099 2.2E-08 57.5 9.7 26 211-236 24-49 (213)
243 PRK08118 topology modulation p 97.5 0.00014 3.1E-09 60.2 4.2 33 214-246 3-38 (167)
244 TIGR03499 FlhF flagellar biosy 97.5 0.00085 1.9E-08 60.5 9.6 28 211-238 193-220 (282)
245 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0015 3.2E-08 63.1 11.3 126 212-361 545-690 (802)
246 COG2274 SunT ABC-type bacterio 97.4 0.00062 1.3E-08 68.7 9.4 28 210-237 497-524 (709)
247 cd03233 ABC_PDR_domain1 The pl 97.4 0.0008 1.7E-08 57.6 8.8 27 211-237 32-58 (202)
248 PRK12723 flagellar biosynthesi 97.4 0.0015 3.2E-08 61.3 11.1 27 211-237 173-199 (388)
249 COG0488 Uup ATPase components 97.4 0.00096 2.1E-08 65.1 10.1 62 285-349 161-225 (530)
250 PRK06762 hypothetical protein; 97.4 0.00084 1.8E-08 55.5 8.4 25 212-236 2-26 (166)
251 PF14532 Sigma54_activ_2: Sigm 97.4 0.00023 5E-09 56.9 4.9 46 191-237 1-46 (138)
252 cd01124 KaiC KaiC is a circadi 97.4 0.0003 6.6E-09 59.2 5.9 33 215-247 2-34 (187)
253 cd03254 ABCC_Glucan_exporter_l 97.4 0.0014 3.1E-08 57.2 10.3 26 211-236 28-53 (229)
254 TIGR00960 3a0501s02 Type II (G 97.4 0.0013 2.8E-08 56.9 9.8 26 211-236 28-53 (216)
255 cd01125 repA Hexameric Replica 97.4 0.0014 3.1E-08 57.6 10.2 24 214-237 3-26 (239)
256 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0014 3.1E-08 57.2 10.1 49 198-247 7-55 (229)
257 cd03253 ABCC_ATM1_transporter 97.4 0.0012 2.6E-08 57.9 9.7 26 211-236 26-51 (236)
258 KOG2228 Origin recognition com 97.4 0.0023 4.9E-08 57.6 11.1 173 187-361 23-217 (408)
259 cd03278 ABC_SMC_barmotin Barmo 97.4 0.001 2.2E-08 56.7 8.8 22 214-235 24-45 (197)
260 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0013 2.9E-08 58.5 9.9 38 210-247 34-71 (259)
261 COG0464 SpoVK ATPases of the A 97.4 0.00092 2E-08 65.5 9.6 129 210-362 274-422 (494)
262 COG1223 Predicted ATPase (AAA+ 97.4 0.0012 2.5E-08 57.3 8.9 153 187-363 120-297 (368)
263 cd03213 ABCG_EPDR ABCG transpo 97.4 0.0011 2.4E-08 56.4 8.9 26 211-236 34-59 (194)
264 PRK09544 znuC high-affinity zi 97.4 0.00093 2E-08 59.3 8.7 26 211-236 29-54 (251)
265 cd01121 Sms Sms (bacterial rad 97.4 0.001 2.2E-08 62.2 9.3 50 197-247 68-117 (372)
266 cd03369 ABCC_NFT1 Domain 2 of 97.4 0.0024 5.2E-08 54.9 11.0 59 287-347 135-196 (207)
267 KOG0727 26S proteasome regulat 97.4 0.0031 6.7E-08 54.4 11.2 93 190-306 157-259 (408)
268 PRK14249 phosphate ABC transpo 97.4 0.0018 3.9E-08 57.4 10.4 27 211-237 29-55 (251)
269 PRK14259 phosphate ABC transpo 97.4 0.002 4.3E-08 57.8 10.7 26 211-236 38-63 (269)
270 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00052 1.1E-08 63.8 7.1 102 210-332 60-166 (362)
271 cd03250 ABCC_MRP_domain1 Domai 97.4 0.0032 7E-08 53.9 11.6 28 210-237 29-56 (204)
272 PRK13695 putative NTPase; Prov 97.3 0.00034 7.4E-09 58.3 5.3 25 214-238 2-26 (174)
273 TIGR01425 SRP54_euk signal rec 97.3 0.0094 2E-07 56.5 15.4 30 210-239 98-127 (429)
274 PRK10867 signal recognition pa 97.3 0.01 2.2E-07 56.6 15.7 30 210-239 98-127 (433)
275 cd03292 ABC_FtsE_transporter F 97.3 0.002 4.2E-08 55.7 10.2 26 211-236 26-51 (214)
276 PRK13538 cytochrome c biogenes 97.3 0.0025 5.4E-08 54.6 10.7 26 211-236 26-51 (204)
277 cd03269 ABC_putative_ATPase Th 97.3 0.0016 3.4E-08 56.1 9.5 26 211-236 25-50 (210)
278 cd03224 ABC_TM1139_LivF_branch 97.3 0.00094 2E-08 58.0 8.1 26 211-236 25-50 (222)
279 cd03244 ABCC_MRP_domain2 Domai 97.3 0.0015 3.2E-08 56.8 9.3 26 211-236 29-54 (221)
280 cd03259 ABC_Carb_Solutes_like 97.3 0.0012 2.6E-08 57.0 8.7 26 211-236 25-50 (213)
281 PRK14247 phosphate ABC transpo 97.3 0.0019 4.2E-08 57.2 10.2 27 211-237 28-54 (250)
282 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.3 0.0019 4.1E-08 56.8 10.1 26 211-236 28-53 (238)
283 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.001 2.2E-08 54.1 7.6 118 213-333 3-138 (159)
284 PRK13657 cyclic beta-1,2-gluca 97.3 0.00058 1.3E-08 68.4 7.6 28 210-237 359-386 (588)
285 PRK05541 adenylylsulfate kinas 97.3 0.0003 6.6E-09 58.8 4.7 38 210-247 5-42 (176)
286 COG1126 GlnQ ABC-type polar am 97.3 0.0013 2.8E-08 55.6 8.2 55 283-339 142-202 (240)
287 PRK14269 phosphate ABC transpo 97.3 0.0018 4E-08 57.2 9.9 26 211-236 27-52 (246)
288 cd03251 ABCC_MsbA MsbA is an e 97.3 0.0017 3.7E-08 56.9 9.6 26 211-236 27-52 (234)
289 KOG0731 AAA+-type ATPase conta 97.3 0.0014 3E-08 65.5 9.8 153 186-362 309-494 (774)
290 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.0019 4.2E-08 56.0 9.8 26 211-236 29-54 (220)
291 cd03115 SRP The signal recogni 97.3 0.0024 5.2E-08 53.1 10.0 26 214-239 2-27 (173)
292 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.0017 3.7E-08 56.2 9.4 26 211-236 29-54 (218)
293 PRK12726 flagellar biosynthesi 97.3 0.0032 7E-08 58.3 11.4 30 210-239 204-233 (407)
294 PRK05703 flhF flagellar biosyn 97.3 0.0047 1E-07 58.9 13.0 26 212-237 221-246 (424)
295 PRK14722 flhF flagellar biosyn 97.3 0.0038 8.3E-08 58.1 12.0 30 210-239 135-164 (374)
296 cd03226 ABC_cobalt_CbiO_domain 97.3 0.0014 3.1E-08 56.2 8.7 26 211-236 25-50 (205)
297 PRK11248 tauB taurine transpor 97.3 0.0022 4.7E-08 57.1 10.1 26 211-236 26-51 (255)
298 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.002 4.4E-08 54.1 9.5 23 214-236 1-23 (183)
299 COG1066 Sms Predicted ATP-depe 97.3 0.0021 4.5E-08 59.4 9.9 99 197-305 79-178 (456)
300 PRK08233 hypothetical protein; 97.3 0.0012 2.5E-08 55.4 7.9 26 212-237 3-28 (182)
301 TIGR03864 PQQ_ABC_ATP ABC tran 97.3 0.0019 4.1E-08 56.7 9.5 26 211-236 26-51 (236)
302 PRK13541 cytochrome c biogenes 97.3 0.0023 4.9E-08 54.4 9.6 26 211-236 25-50 (195)
303 PRK08533 flagellar accessory p 97.3 0.0009 2E-08 58.5 7.3 38 210-247 22-59 (230)
304 cd03248 ABCC_TAP TAP, the Tran 97.3 0.0018 3.8E-08 56.5 9.1 26 211-236 39-64 (226)
305 cd03261 ABC_Org_Solvent_Resist 97.3 0.0016 3.5E-08 57.1 8.8 26 211-236 25-50 (235)
306 COG0468 RecA RecA/RadA recombi 97.3 0.0012 2.7E-08 58.7 8.0 100 199-305 48-151 (279)
307 KOG1514 Origin recognition com 97.3 0.0018 4E-08 63.4 9.7 134 186-329 394-545 (767)
308 cd03258 ABC_MetN_methionine_tr 97.2 0.0014 3.1E-08 57.4 8.4 26 211-236 30-55 (233)
309 PRK07667 uridine kinase; Provi 97.2 0.0007 1.5E-08 57.5 6.2 40 198-238 4-43 (193)
310 PRK11174 cysteine/glutathione 97.2 0.0008 1.7E-08 67.5 7.6 35 210-246 374-408 (588)
311 PRK14273 phosphate ABC transpo 97.2 0.0025 5.4E-08 56.6 10.0 27 211-237 32-58 (254)
312 COG0396 sufC Cysteine desulfur 97.2 0.0028 6E-08 54.1 9.5 57 285-343 152-214 (251)
313 TIGR00959 ffh signal recogniti 97.2 0.014 3.1E-07 55.5 15.5 27 211-237 98-124 (428)
314 cd03301 ABC_MalK_N The N-termi 97.2 0.0018 3.9E-08 55.8 8.9 26 211-236 25-50 (213)
315 PRK10908 cell division protein 97.2 0.0026 5.6E-08 55.3 9.9 26 211-236 27-52 (222)
316 PRK14235 phosphate transporter 97.2 0.0033 7.3E-08 56.3 10.8 27 211-237 44-70 (267)
317 PRK13540 cytochrome c biogenes 97.2 0.0024 5.2E-08 54.5 9.5 26 211-236 26-51 (200)
318 PRK11176 lipid transporter ATP 97.2 0.00062 1.3E-08 68.1 6.6 27 211-237 368-394 (582)
319 KOG0735 AAA+-type ATPase [Post 97.2 0.0034 7.4E-08 61.7 11.2 126 212-360 431-583 (952)
320 cd01130 VirB11-like_ATPase Typ 97.2 0.00052 1.1E-08 57.9 5.1 110 212-334 25-136 (186)
321 cd03263 ABC_subfamily_A The AB 97.2 0.0022 4.8E-08 55.6 9.3 26 211-236 27-52 (220)
322 PRK10247 putative ABC transpor 97.2 0.0011 2.4E-08 57.7 7.4 60 287-348 147-211 (225)
323 PRK11823 DNA repair protein Ra 97.2 0.00088 1.9E-08 64.4 7.2 50 197-247 66-115 (446)
324 cd03262 ABC_HisP_GlnQ_permease 97.2 0.0024 5.1E-08 55.1 9.3 26 211-236 25-50 (213)
325 PF01583 APS_kinase: Adenylyls 97.2 0.00053 1.2E-08 55.6 4.8 36 212-247 2-37 (156)
326 PRK09580 sufC cysteine desulfu 97.2 0.0018 3.8E-08 57.4 8.6 26 211-236 26-51 (248)
327 TIGR00972 3a0107s01c2 phosphat 97.2 0.0033 7.1E-08 55.6 10.3 27 211-237 26-52 (247)
328 PRK15064 ABC transporter ATP-b 97.2 0.0027 5.9E-08 62.8 10.8 51 286-338 164-217 (530)
329 PRK14265 phosphate ABC transpo 97.2 0.003 6.5E-08 56.8 10.2 26 211-236 45-70 (274)
330 TIGR02857 CydD thiol reductant 97.2 0.0014 2.9E-08 64.9 8.6 27 210-236 346-372 (529)
331 TIGR03608 L_ocin_972_ABC putat 97.2 0.0034 7.4E-08 53.8 10.1 26 211-236 23-48 (206)
332 PRK14250 phosphate ABC transpo 97.2 0.002 4.4E-08 56.7 8.8 26 211-236 28-53 (241)
333 PRK12727 flagellar biosynthesi 97.2 0.0068 1.5E-07 58.6 12.8 30 210-239 348-377 (559)
334 TIGR00416 sms DNA repair prote 97.2 0.0011 2.3E-08 63.9 7.5 51 196-247 79-129 (454)
335 PRK14272 phosphate ABC transpo 97.2 0.004 8.7E-08 55.2 10.8 27 211-237 29-55 (252)
336 cd03252 ABCC_Hemolysin The ABC 97.2 0.0043 9.4E-08 54.4 10.9 26 211-236 27-52 (237)
337 cd03289 ABCC_CFTR2 The CFTR su 97.2 0.005 1.1E-07 55.3 11.3 27 211-237 29-55 (275)
338 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.2 0.0025 5.4E-08 55.5 9.2 27 211-237 47-73 (224)
339 TIGR03522 GldA_ABC_ATP gliding 97.2 0.0018 4E-08 59.0 8.7 27 210-236 26-52 (301)
340 TIGR02673 FtsE cell division A 97.2 0.002 4.3E-08 55.6 8.5 26 211-236 27-52 (214)
341 TIGR02203 MsbA_lipidA lipid A 97.2 0.00087 1.9E-08 66.9 7.0 28 210-237 356-383 (571)
342 cd03264 ABC_drug_resistance_li 97.2 0.0026 5.7E-08 54.8 9.1 23 214-236 27-49 (211)
343 TIGR02315 ABC_phnC phosphonate 97.2 0.0019 4.1E-08 56.9 8.4 26 211-236 27-52 (243)
344 COG0572 Udk Uridine kinase [Nu 97.2 0.00087 1.9E-08 57.1 5.9 30 210-239 6-35 (218)
345 PRK15455 PrkA family serine pr 97.2 0.00048 1E-08 66.8 4.8 52 187-239 75-130 (644)
346 PRK11124 artP arginine transpo 97.2 0.0019 4.2E-08 56.9 8.4 26 211-236 27-52 (242)
347 COG1131 CcmA ABC-type multidru 97.2 0.0027 5.9E-08 57.6 9.5 29 210-238 29-57 (293)
348 PRK10463 hydrogenase nickel in 97.2 0.0021 4.6E-08 57.5 8.5 40 199-241 94-133 (290)
349 TIGR02324 CP_lyasePhnL phospho 97.2 0.0038 8.3E-08 54.3 10.1 27 211-237 33-59 (224)
350 PF13238 AAA_18: AAA domain; P 97.2 0.00036 7.9E-09 54.7 3.4 22 215-236 1-22 (129)
351 COG3910 Predicted ATPase [Gene 97.2 0.0037 8E-08 51.6 9.1 25 211-235 36-60 (233)
352 COG0563 Adk Adenylate kinase a 97.2 0.0016 3.5E-08 54.4 7.3 23 214-236 2-24 (178)
353 cd02027 APSK Adenosine 5'-phos 97.2 0.0033 7.1E-08 51.0 9.0 24 214-237 1-24 (149)
354 PRK14238 phosphate transporter 97.1 0.003 6.4E-08 56.8 9.5 27 211-237 49-75 (271)
355 TIGR02524 dot_icm_DotB Dot/Icm 97.1 0.00093 2E-08 62.2 6.3 96 212-315 134-232 (358)
356 TIGR03411 urea_trans_UrtD urea 97.1 0.0049 1.1E-07 54.3 10.7 26 211-236 27-52 (242)
357 TIGR01188 drrA daunorubicin re 97.1 0.0032 7E-08 57.5 9.8 26 211-236 18-43 (302)
358 TIGR03375 type_I_sec_LssB type 97.1 0.0011 2.3E-08 67.8 7.3 27 211-237 490-516 (694)
359 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.00089 1.9E-08 57.8 5.7 23 212-234 29-51 (213)
360 TIGR03410 urea_trans_UrtE urea 97.1 0.002 4.3E-08 56.3 8.1 26 211-236 25-50 (230)
361 PRK11247 ssuB aliphatic sulfon 97.1 0.0024 5.2E-08 56.8 8.7 26 211-236 37-62 (257)
362 PF00485 PRK: Phosphoribulokin 97.1 0.00044 9.6E-09 58.8 3.8 26 214-239 1-26 (194)
363 cd03266 ABC_NatA_sodium_export 97.1 0.0032 6.9E-08 54.5 9.3 26 211-236 30-55 (218)
364 PRK11608 pspF phage shock prot 97.1 0.0031 6.6E-08 58.2 9.6 47 188-235 6-52 (326)
365 TIGR03740 galliderm_ABC gallid 97.1 0.0024 5.2E-08 55.5 8.4 26 211-236 25-50 (223)
366 PRK14267 phosphate ABC transpo 97.1 0.0038 8.2E-08 55.4 9.8 27 211-237 29-55 (253)
367 PF10443 RNA12: RNA12 protein; 97.1 0.0066 1.4E-07 56.8 11.5 39 193-234 1-40 (431)
368 PTZ00494 tuzin-like protein; P 97.1 0.0094 2E-07 55.9 12.4 164 183-360 366-541 (664)
369 TIGR01184 ntrCD nitrate transp 97.1 0.0028 6.1E-08 55.4 8.8 27 211-237 10-36 (230)
370 PRK07261 topology modulation p 97.1 0.0004 8.6E-09 57.8 3.3 24 214-237 2-25 (171)
371 PRK14242 phosphate transporter 97.1 0.0046 1E-07 54.9 10.3 26 211-236 31-56 (253)
372 TIGR03771 anch_rpt_ABC anchore 97.1 0.0032 7E-08 54.7 9.1 26 211-236 5-30 (223)
373 cd03283 ABC_MutS-like MutS-lik 97.1 0.0012 2.6E-08 56.4 6.2 24 213-236 26-49 (199)
374 PRK10744 pstB phosphate transp 97.1 0.0045 9.7E-08 55.2 10.2 26 211-236 38-63 (260)
375 cd03294 ABC_Pro_Gly_Bertaine T 97.1 0.0039 8.5E-08 55.9 9.8 26 211-236 49-74 (269)
376 PF10137 TIR-like: Predicted n 97.1 0.002 4.3E-08 50.2 6.8 61 15-78 1-61 (125)
377 PRK10575 iron-hydroxamate tran 97.1 0.0039 8.4E-08 55.8 9.7 26 211-236 36-61 (265)
378 TIGR01817 nifA Nif-specific re 97.1 0.0077 1.7E-07 59.6 12.7 51 185-236 193-243 (534)
379 PRK14275 phosphate ABC transpo 97.1 0.0036 7.9E-08 56.6 9.6 25 211-235 64-88 (286)
380 PRK14243 phosphate transporter 97.1 0.0069 1.5E-07 54.1 11.2 26 211-236 35-60 (264)
381 TIGR00958 3a01208 Conjugate Tr 97.1 0.002 4.4E-08 65.9 8.8 28 210-237 505-532 (711)
382 PTZ00301 uridine kinase; Provi 97.1 0.00052 1.1E-08 58.9 3.8 27 212-238 3-29 (210)
383 PRK14261 phosphate ABC transpo 97.1 0.0043 9.4E-08 55.0 9.8 25 211-235 31-55 (253)
384 PRK13647 cbiO cobalt transport 97.1 0.0021 4.5E-08 57.8 7.8 26 211-236 30-55 (274)
385 PRK14721 flhF flagellar biosyn 97.1 0.013 2.8E-07 55.5 13.3 27 210-236 189-215 (420)
386 TIGR01978 sufC FeS assembly AT 97.1 0.005 1.1E-07 54.2 10.1 25 211-235 25-49 (243)
387 PRK11300 livG leucine/isoleuci 97.1 0.0032 7E-08 55.9 8.9 26 211-236 30-55 (255)
388 PRK13546 teichoic acids export 97.1 0.0042 9E-08 55.5 9.6 27 211-237 49-75 (264)
389 PRK11153 metN DL-methionine tr 97.1 0.0033 7.1E-08 58.5 9.3 26 211-236 30-55 (343)
390 cd03298 ABC_ThiQ_thiamine_tran 97.1 0.0046 9.9E-08 53.2 9.6 26 211-236 23-48 (211)
391 PRK09302 circadian clock prote 97.1 0.0023 5.1E-08 62.9 8.7 51 196-247 16-67 (509)
392 cd03300 ABC_PotA_N PotA is an 97.1 0.0043 9.3E-08 54.3 9.5 27 211-237 25-51 (232)
393 PRK10771 thiQ thiamine transpo 97.1 0.0038 8.1E-08 54.7 9.2 26 211-236 24-49 (232)
394 PF00437 T2SE: Type II/IV secr 97.1 0.00045 9.8E-09 62.0 3.4 121 195-336 111-235 (270)
395 PRK11147 ABC transporter ATPas 97.1 0.0049 1.1E-07 62.3 11.2 52 286-339 165-219 (635)
396 cd03243 ABC_MutS_homologs The 97.1 0.0006 1.3E-08 58.4 4.0 22 213-234 30-51 (202)
397 PTZ00088 adenylate kinase 1; P 97.1 0.0022 4.8E-08 55.9 7.5 24 214-237 8-31 (229)
398 PRK11264 putative amino-acid A 97.1 0.0051 1.1E-07 54.5 10.1 26 211-236 28-53 (250)
399 TIGR02525 plasmid_TraJ plasmid 97.1 0.0024 5.2E-08 59.6 8.2 110 213-334 150-261 (372)
400 COG4618 ArpD ABC-type protease 97.1 0.002 4.3E-08 61.0 7.5 51 286-339 481-538 (580)
401 PRK11160 cysteine/glutathione 97.1 0.0029 6.2E-08 63.2 9.3 28 210-237 364-391 (574)
402 TIGR02314 ABC_MetN D-methionin 97.1 0.001 2.3E-08 61.6 5.7 26 211-236 30-55 (343)
403 PRK10790 putative multidrug tr 97.1 0.0014 2.9E-08 65.9 7.0 29 210-238 365-393 (592)
404 PRK13652 cbiO cobalt transport 97.0 0.0029 6.2E-08 57.0 8.4 26 211-236 29-54 (277)
405 PRK11819 putative ABC transpor 97.0 0.0044 9.6E-08 61.6 10.5 28 210-237 31-58 (556)
406 TIGR01846 type_I_sec_HlyB type 97.0 0.0013 2.8E-08 67.2 6.9 27 211-237 482-508 (694)
407 cd03236 ABC_RNaseL_inhibitor_d 97.0 0.0046 1E-07 54.9 9.6 28 210-237 24-51 (255)
408 PRK13545 tagH teichoic acids e 97.0 0.0039 8.5E-08 60.4 9.6 27 211-237 49-75 (549)
409 PRK05480 uridine/cytidine kina 97.0 0.00062 1.3E-08 58.6 3.9 27 210-236 4-30 (209)
410 PRK13640 cbiO cobalt transport 97.0 0.0041 9E-08 56.2 9.4 27 211-237 32-58 (282)
411 PRK10636 putative ABC transpor 97.0 0.0039 8.5E-08 63.0 10.1 51 287-339 159-212 (638)
412 cd03245 ABCC_bacteriocin_expor 97.0 0.0081 1.8E-07 52.0 10.9 27 210-236 28-54 (220)
413 PRK13650 cbiO cobalt transport 97.0 0.0032 6.8E-08 56.8 8.6 26 211-236 32-57 (279)
414 PRK13648 cbiO cobalt transport 97.0 0.0031 6.8E-08 56.5 8.5 26 211-236 34-59 (269)
415 PRK12724 flagellar biosynthesi 97.0 0.0062 1.4E-07 57.3 10.6 26 211-236 222-247 (432)
416 PRK14262 phosphate ABC transpo 97.0 0.0055 1.2E-07 54.3 10.0 26 211-236 28-53 (250)
417 PF07724 AAA_2: AAA domain (Cd 97.0 0.00069 1.5E-08 56.2 3.9 35 212-246 3-38 (171)
418 PRK14258 phosphate ABC transpo 97.0 0.0062 1.3E-07 54.3 10.3 28 210-237 31-58 (261)
419 cd02019 NK Nucleoside/nucleoti 97.0 0.00059 1.3E-08 47.4 3.0 23 214-236 1-23 (69)
420 PRK10419 nikE nickel transport 97.0 0.0054 1.2E-07 55.0 9.9 26 211-236 37-62 (268)
421 TIGR03005 ectoine_ehuA ectoine 97.0 0.0036 7.9E-08 55.5 8.8 26 211-236 25-50 (252)
422 TIGR01277 thiQ thiamine ABC tr 97.0 0.0043 9.2E-08 53.5 9.0 26 211-236 23-48 (213)
423 TIGR01288 nodI ATP-binding ABC 97.0 0.0053 1.2E-07 56.1 10.1 26 211-236 29-54 (303)
424 TIGR02533 type_II_gspE general 97.0 0.0032 7E-08 61.1 9.0 117 196-333 230-346 (486)
425 PRK10418 nikD nickel transport 97.0 0.0045 9.8E-08 55.0 9.3 27 211-237 28-54 (254)
426 TIGR02868 CydC thiol reductant 97.0 0.0025 5.4E-08 63.0 8.4 28 210-237 359-386 (529)
427 TIGR02974 phageshock_pspF psp 97.0 0.0054 1.2E-07 56.6 9.9 46 190-236 1-46 (329)
428 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.00097 2.1E-08 57.1 4.7 118 211-339 28-157 (204)
429 TIGR00235 udk uridine kinase. 97.0 0.00072 1.6E-08 58.1 3.9 28 210-237 4-31 (207)
430 PRK00131 aroK shikimate kinase 97.0 0.00071 1.5E-08 56.2 3.7 27 211-237 3-29 (175)
431 KOG0729 26S proteasome regulat 97.0 0.0056 1.2E-07 53.3 9.1 50 189-238 178-237 (435)
432 PRK04301 radA DNA repair and r 97.0 0.0035 7.5E-08 57.7 8.6 49 198-247 89-143 (317)
433 PRK14260 phosphate ABC transpo 97.0 0.0062 1.3E-07 54.3 10.0 27 211-237 32-58 (259)
434 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0033 7E-08 55.7 8.1 25 215-239 2-26 (249)
435 smart00534 MUTSac ATPase domai 97.0 0.00042 9.1E-09 58.4 2.3 21 214-234 1-21 (185)
436 TIGR00968 3a0106s01 sulfate AB 97.0 0.0046 9.9E-08 54.3 8.9 26 211-236 25-50 (237)
437 PRK11000 maltose/maltodextrin 97.0 0.0045 9.8E-08 58.1 9.4 26 211-236 28-53 (369)
438 PRK03839 putative kinase; Prov 97.0 0.00067 1.5E-08 56.9 3.5 25 214-238 2-26 (180)
439 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0027 5.8E-08 55.3 7.4 48 199-247 4-51 (224)
440 PRK05800 cobU adenosylcobinami 97.0 0.0088 1.9E-07 49.6 10.0 23 214-236 3-25 (170)
441 PRK05973 replicative DNA helic 97.0 0.0054 1.2E-07 53.5 9.0 38 210-247 62-99 (237)
442 PF08423 Rad51: Rad51; InterP 97.0 0.0022 4.8E-08 56.9 6.8 39 197-236 24-62 (256)
443 TIGR03796 NHPM_micro_ABC1 NHPM 97.0 0.0021 4.6E-08 65.9 7.6 28 210-237 503-530 (710)
444 PRK06547 hypothetical protein; 97.0 0.0013 2.9E-08 54.6 5.1 28 210-237 13-40 (172)
445 PRK13409 putative ATPase RIL; 97.0 0.0045 9.7E-08 61.8 9.6 27 211-237 364-390 (590)
446 cd03285 ABC_MSH2_euk MutS2 hom 97.0 0.00088 1.9E-08 58.2 4.1 24 211-234 29-52 (222)
447 PF00910 RNA_helicase: RNA hel 97.0 0.00052 1.1E-08 52.2 2.4 26 215-240 1-26 (107)
448 PRK14253 phosphate ABC transpo 97.0 0.0091 2E-07 52.8 10.7 27 211-237 28-54 (249)
449 TIGR02655 circ_KaiC circadian 97.0 0.003 6.6E-08 61.5 8.3 129 197-332 7-166 (484)
450 PF08433 KTI12: Chromatin asso 96.9 0.0025 5.5E-08 56.9 7.0 26 213-238 2-27 (270)
451 TIGR02236 recomb_radA DNA repa 96.9 0.0043 9.4E-08 56.8 8.8 49 198-247 82-136 (310)
452 COG2401 ABC-type ATPase fused 96.9 0.0024 5.3E-08 59.0 6.8 133 210-343 407-578 (593)
453 TIGR02788 VirB11 P-type DNA tr 96.9 0.0033 7.1E-08 57.6 7.8 113 212-337 144-257 (308)
454 PRK13643 cbiO cobalt transport 96.9 0.0044 9.6E-08 56.1 8.7 26 211-236 31-56 (288)
455 TIGR01192 chvA glucan exporter 96.9 0.0024 5.1E-08 64.0 7.5 27 210-236 359-385 (585)
456 TIGR03873 F420-0_ABC_ATP propo 96.9 0.0047 1E-07 54.9 8.7 26 211-236 26-51 (256)
457 TIGR01842 type_I_sec_PrtD type 96.9 0.0051 1.1E-07 61.1 9.8 28 210-237 342-369 (544)
458 PRK14237 phosphate transporter 96.9 0.0092 2E-07 53.4 10.5 27 211-237 45-71 (267)
459 cd03288 ABCC_SUR2 The SUR doma 96.9 0.0069 1.5E-07 53.9 9.7 26 211-236 46-71 (257)
460 PRK14264 phosphate ABC transpo 96.9 0.0074 1.6E-07 55.2 10.1 26 211-236 70-95 (305)
461 PRK13537 nodulation ABC transp 96.9 0.0032 6.9E-08 57.6 7.7 26 211-236 32-57 (306)
462 COG3854 SpoIIIAA ncharacterize 96.9 0.006 1.3E-07 52.1 8.5 112 211-333 136-253 (308)
463 PRK14240 phosphate transporter 96.9 0.009 2E-07 52.9 10.4 25 211-235 28-52 (250)
464 PRK14246 phosphate ABC transpo 96.9 0.0056 1.2E-07 54.5 9.1 26 211-236 35-60 (257)
465 PRK11144 modC molybdate transp 96.9 0.0039 8.6E-08 58.2 8.3 26 211-236 23-48 (352)
466 PRK04040 adenylate kinase; Pro 96.9 0.00096 2.1E-08 56.3 3.8 25 213-237 3-27 (188)
467 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00091 2E-08 56.4 3.7 25 212-236 3-27 (188)
468 KOG0742 AAA+-type ATPase [Post 96.9 0.0045 9.8E-08 57.1 8.3 127 210-362 382-527 (630)
469 CHL00131 ycf16 sulfate ABC tra 96.9 0.0074 1.6E-07 53.5 9.7 25 211-235 32-56 (252)
470 PRK13536 nodulation factor exp 96.9 0.0058 1.2E-07 56.7 9.3 27 210-236 65-91 (340)
471 PF07726 AAA_3: ATPase family 96.9 0.00062 1.3E-08 52.9 2.4 28 215-242 2-29 (131)
472 TIGR01193 bacteriocin_ABC ABC- 96.9 0.0049 1.1E-07 63.2 9.7 28 210-237 498-525 (708)
473 PF00406 ADK: Adenylate kinase 96.9 0.0014 3.1E-08 53.2 4.7 20 217-236 1-20 (151)
474 PRK14268 phosphate ABC transpo 96.9 0.0079 1.7E-07 53.6 9.8 26 211-236 37-62 (258)
475 PRK10253 iron-enterobactin tra 96.9 0.0057 1.2E-07 54.7 8.9 26 211-236 32-57 (265)
476 KOG0728 26S proteasome regulat 96.9 0.019 4.1E-07 49.6 11.4 126 210-360 179-328 (404)
477 COG0465 HflB ATP-dependent Zn 96.9 0.0092 2E-07 58.5 10.8 54 186-239 148-210 (596)
478 PRK09984 phosphonate/organopho 96.9 0.0041 8.8E-08 55.5 8.0 27 211-237 29-55 (262)
479 PRK09270 nucleoside triphospha 96.9 0.0014 2.9E-08 57.4 4.8 30 210-239 31-60 (229)
480 PRK14236 phosphate transporter 96.9 0.01 2.2E-07 53.3 10.5 26 211-236 50-75 (272)
481 PLN03073 ABC transporter F fam 96.9 0.0067 1.4E-07 61.9 10.2 50 287-338 354-406 (718)
482 PRK13642 cbiO cobalt transport 96.9 0.0075 1.6E-07 54.3 9.6 26 211-236 32-57 (277)
483 COG4988 CydD ABC-type transpor 96.9 0.0024 5.2E-08 61.6 6.5 28 210-237 345-372 (559)
484 TIGR02238 recomb_DMC1 meiotic 96.9 0.0039 8.4E-08 57.0 7.7 38 197-235 82-119 (313)
485 TIGR02782 TrbB_P P-type conjug 96.9 0.0046 9.9E-08 56.2 8.1 91 213-316 133-225 (299)
486 PRK14528 adenylate kinase; Pro 96.9 0.0051 1.1E-07 51.9 7.9 24 213-236 2-25 (186)
487 PRK10789 putative multidrug tr 96.9 0.0027 6E-08 63.3 7.2 28 210-237 339-366 (569)
488 COG1419 FlhF Flagellar GTP-bin 96.9 0.011 2.3E-07 55.0 10.4 87 211-304 202-290 (407)
489 TIGR03719 ABC_ABC_ChvD ATP-bin 96.9 0.0071 1.5E-07 60.1 10.1 27 211-237 30-56 (552)
490 cd00227 CPT Chloramphenicol (C 96.9 0.0011 2.4E-08 55.3 3.8 27 212-238 2-28 (175)
491 PF13245 AAA_19: Part of AAA d 96.8 0.0033 7.2E-08 44.5 5.6 24 213-236 11-35 (76)
492 PRK13651 cobalt transporter AT 96.8 0.0058 1.3E-07 55.8 8.7 26 211-236 32-57 (305)
493 TIGR02142 modC_ABC molybdenum 96.8 0.0059 1.3E-07 57.1 8.9 26 211-236 22-47 (354)
494 cd03299 ABC_ModC_like Archeal 96.8 0.0094 2E-07 52.3 9.7 25 211-235 24-48 (235)
495 PRK15439 autoinducer 2 ABC tra 96.8 0.0076 1.7E-07 59.3 10.1 26 211-236 36-61 (510)
496 KOG1969 DNA replication checkp 96.8 0.0048 1E-07 60.9 8.3 27 210-236 324-350 (877)
497 cd03279 ABC_sbcCD SbcCD and ot 96.8 0.017 3.7E-07 49.8 11.2 22 212-233 28-49 (213)
498 TIGR01313 therm_gnt_kin carboh 96.8 0.0067 1.5E-07 49.8 8.3 22 215-236 1-22 (163)
499 PRK00889 adenylylsulfate kinas 96.8 0.0017 3.6E-08 54.2 4.7 28 211-238 3-30 (175)
500 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0013 2.8E-08 56.2 4.0 21 213-233 29-49 (200)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.2e-61 Score=503.81 Aligned_cols=354 Identities=39% Similarity=0.715 Sum_probs=307.3
Q ss_pred CCCCCCCCCCCCcccEEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccc
Q 036738 1 MTSVGNQNVSHWTYDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYA 80 (364)
Q Consensus 1 ~~~~~~~~~~~~~~dvfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~ 80 (364)
|+++| |+++..+|||||||+|+|+|+.|+.||+.+|.++||.+|.|+ ++..|+.+.+++.+||++|++.|+|+|++|+
T Consensus 1 ~~~~~-~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya 78 (1153)
T PLN03210 1 MASSS-SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA 78 (1153)
T ss_pred CCCCC-CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence 55544 445678999999999999999999999999999999999987 7999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHhhhcCCCeeEEeEEeecCCcccccccCchHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcccccccc
Q 036738 81 SSTWCLDELVHILDCKNKNAQRMVYPIFYDVEPTVVRNQTGNFQEAFAKHVEVFKKSIEKVQKWREALKEVANISGWELK 160 (364)
Q Consensus 81 ~s~~~~~El~~~~~~~~~~~~~~viPv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (364)
.|.||++||.+++++.+..++. |+||||+|+|++||.|+|.|+++|.++.++. ..+++++|++||.+++++.|+++.
T Consensus 79 ~s~wcl~el~~i~~~~~~~~~~-v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~ 155 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEELGQL-VIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ 155 (1153)
T ss_pred cchHHHHHHHHHHHhhhhcCce-EEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC
Confidence 9999999999999999888888 9999999999999999999999999876543 345799999999999999999998
Q ss_pred cccchhhHHHHHHHhhhccc-cccccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 161 EYRNESKFIWDIINAISSQI-RVKPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 161 ~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.+.+|.+++++|+.++..++ ..++.....++||+.+++++..+|.... +.+++++|+||||+||||||+++|+++..+
T Consensus 156 ~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 156 NWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred CCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc-CceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 88999999999999999999 6667778899999999999999987665 678999999999999999999999999999
Q ss_pred cccceEEeec--cccc---c-----ccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHHH
Q 036738 240 FEGSSFLANV--REKS---E-----REGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSKQ 309 (364)
Q Consensus 240 f~~~~~~~~~--~~~~---~-----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~ 309 (364)
|++.+|+... .... . .......+..+++.++.......... ...+++.+.++++||||||||+..+
T Consensus 235 F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~ 310 (1153)
T PLN03210 235 FQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDV 310 (1153)
T ss_pred CCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHH
Confidence 9998887532 1000 0 01112345566666665443322221 2457888999999999999999999
Q ss_pred HHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeCCCCCHhHHHHHHhhcCC
Q 036738 310 LEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKPNGLNYNEALQLFNMKAF 364 (364)
Q Consensus 310 ~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~af 364 (364)
++.+.....++++||+||||||++.++..++..++|+|+.|+.+||++||+++||
T Consensus 311 l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 311 LDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 9999887777889999999999999998887889999999999999999999998
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=250.66 Aligned_cols=158 Identities=28% Similarity=0.497 Sum_probs=142.5
Q ss_pred CCCCCCCCcccEEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcc
Q 036738 5 GNQNVSHWTYDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTW 84 (364)
Q Consensus 5 ~~~~~~~~~~dvfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~ 84 (364)
++|++..++|||||||+|+|+|+.|++||+++|+.+||+||+|++++.+|+.+.+.+.+||++|++.|+|+|++|+.|.|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhhcCCCeeEEeEEeecCCcccccc-cCchHHHHHHHHHHhhhhHHHHHHHHHHHHhhhccccccccc-c
Q 036738 85 CLDELVHILDCKNKNAQRMVYPIFYDVEPTVVRNQ-TGNFQEAFAKHVEVFKKSIEKVQKWREALKEVANISGWELKE-Y 162 (364)
Q Consensus 85 ~~~El~~~~~~~~~~~~~~viPv~~~v~ps~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~ 162 (364)
|++||.+++++.. . |+||||+|+|++||.| .+.. ..+++++|+.||.+++++.|+.+.. .
T Consensus 98 CLdEL~~I~e~~~----~-ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~~~~ 159 (187)
T PLN03194 98 CLHELALIMESKK----R-VIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFDSLK 159 (187)
T ss_pred HHHHHHHHHHcCC----E-EEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCCCCC
Confidence 9999999998642 3 9999999999999997 4331 2367999999999999999987754 4
Q ss_pred cchhhHHHHHHHhhhccc
Q 036738 163 RNESKFIWDIINAISSQI 180 (364)
Q Consensus 163 ~~e~~~~~~~~~~~~~~~ 180 (364)
.+|.+++.+|+..+...+
T Consensus 160 ~~e~e~i~~iv~~v~k~l 177 (187)
T PLN03194 160 GNWSEVVTMASDAVIKNL 177 (187)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 779999999998887776
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=4e-26 Score=207.17 Aligned_cols=166 Identities=31% Similarity=0.443 Sum_probs=129.2
Q ss_pred cchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHH--hhcccccceEEeeccccccccCCHHHHHHHHHHHH
Q 036738 193 IDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDL--ISHEFEGSSFLANVREKSEREGGVISFQRQLVSQL 270 (364)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (364)
|+.++++|.+.|.... .+.++|+|+|+||+||||||..+++. ++.+|+.++|+.. .... ....++..++..+
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~-~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNP-SLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-S-CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----cccc-ccccccccccccc
Confidence 7889999999998866 78899999999999999999999988 8889998888873 3333 5578888888888
Q ss_pred hcCCCC--CccChhhhHHHHHHhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCC-CceeeC
Q 036738 271 LKLTDN--RIWNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRV-DEVYKP 347 (364)
Q Consensus 271 ~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~-~~~~~l 347 (364)
...... ...+.+.....+.+.+.++++||||||+|+...|+.+...++....||+||||||+..++...+. ...++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 665332 45566778889999999999999999999999998887766655679999999999988876543 578999
Q ss_pred CCCCHhHHHHHHhhcCC
Q 036738 348 NGLNYNEALQLFNMKAF 364 (364)
Q Consensus 348 ~~L~~~ea~~L~~~~af 364 (364)
++|+.+||++||++.++
T Consensus 155 ~~L~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAG 171 (287)
T ss_dssp SS--HHHHHHHHHHHHT
T ss_pred ccccccccccccccccc
Confidence 99999999999998764
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.91 E-value=3.5e-24 Score=216.79 Aligned_cols=166 Identities=30% Similarity=0.415 Sum_probs=146.9
Q ss_pred cccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHH---hhcccccceEEeeccccccccCCHHHHHHHHH
Q 036738 191 VGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDL---ISHEFEGSSFLANVREKSEREGGVISFQRQLV 267 (364)
Q Consensus 191 ~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (364)
+|.+.-++.+...|..++ ..+++|+||||+||||||+.+.++ +..+|+.++|+. ++..+ +...++.+|+
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f-~~~~iq~~Il 232 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEF-TTRKIQQTIL 232 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecccc-cHHhHHHHHH
Confidence 999999999999998854 389999999999999999999985 568899999999 56666 8999999999
Q ss_pred HHHhcCCCCC-ccChhhhHHHHHHhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh-CCCCcee
Q 036738 268 SQLLKLTDNR-IWNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT-NRVDEVY 345 (364)
Q Consensus 268 ~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~-~~~~~~~ 345 (364)
..++...... .....+....+.+.|..+|++|||||||+..+|+.+...++...+||+|++|||+..|+.. ++....+
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 9887644322 2233677788999999999999999999999999999999887789999999999999999 7778899
Q ss_pred eCCCCCHhHHHHHHhhcCC
Q 036738 346 KPNGLNYNEALQLFNMKAF 364 (364)
Q Consensus 346 ~l~~L~~~ea~~L~~~~af 364 (364)
+++.|+.+|||.||++.||
T Consensus 313 ~v~~L~~~eaW~LF~~~v~ 331 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVG 331 (889)
T ss_pred cccccCccccHHHHHHhhc
Confidence 9999999999999999987
No 5
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.83 E-value=3.7e-20 Score=149.61 Aligned_cols=137 Identities=44% Similarity=0.725 Sum_probs=108.9
Q ss_pred cccEEEcccc-ccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcccHHHHHH
Q 036738 13 TYDVFLSFRG-ADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTWCLDELVH 91 (364)
Q Consensus 13 ~~dvfiSy~~-~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~~~~El~~ 91 (364)
+|||||||++ .+..+.|+.+|...|+..|+.+|.|++.. |......|.++|+.|+++|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999998 34447999999999999999999997543 33333499999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEeEEeecCCcccccccCchHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 036738 92 ILDCKNKNAQRMVYPIFYDVEPTVVRNQTGNFQEAFAKHVEVFKKSIEKVQKWREALKEVA 152 (364)
Q Consensus 92 ~~~~~~~~~~~~viPv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (364)
++......+..++|||+++..|..+..+.+.+...+............. ..|+..+..++
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 9988765344459999999888788888888888887764444333222 57877765553
No 6
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.78 E-value=4.7e-20 Score=148.92 Aligned_cols=132 Identities=36% Similarity=0.616 Sum_probs=106.6
Q ss_pred EEEcccc-ccCcccHHHHHHHHHHcC--CCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcccHHHHHHH
Q 036738 16 VFLSFRG-ADTRKNFISHLYAALNGK--GIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTWCLDELVHI 92 (364)
Q Consensus 16 vfiSy~~-~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~~~~El~~~ 92 (364)
|||||++ +| +..|+..|...|++. |+++|++++|+.+|..+.+.+.++|+.|+++|+|+|++|+.|.||+.|+..+
T Consensus 1 vfisy~~~~d-~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDD-REWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHG-HHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCc-HHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 7999999 55 578999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCC-CeeEEeEEeecCCcccc-cccCchHHHHHHHHHHhhhh--HHHHHHHHHHH
Q 036738 93 LDCKNKNA-QRMVYPIFYDVEPTVVR-NQTGNFQEAFAKHVEVFKKS--IEKVQKWREAL 148 (364)
Q Consensus 93 ~~~~~~~~-~~~viPv~~~v~ps~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 148 (364)
+.+....+ ...|+|+++++.+.+++ .+.+.+...+.....-.... ..+..-|++++
T Consensus 80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~ 139 (141)
T PF01582_consen 80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLR 139 (141)
T ss_dssp HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHH
T ss_pred hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHh
Confidence 99987755 44499999999999988 56655555554433333322 34566776654
No 7
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.68 E-value=9.2e-18 Score=127.79 Aligned_cols=87 Identities=33% Similarity=0.584 Sum_probs=74.8
Q ss_pred EEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcccHHHHHHHHHh
Q 036738 16 VFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTWCLDELVHILDC 95 (364)
Q Consensus 16 vfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~~~~El~~~~~~ 95 (364)
|||||+++| +.+|++|++.|++.|+++|+|. ++.+|+++.+.+.+++++|+++|+++|++|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 799999999 5899999999999999999997 999999999999999999999999999999999999999998844
Q ss_pred hhcCCCeeEEeEEee
Q 036738 96 KNKNAQRMVYPIFYD 110 (364)
Q Consensus 96 ~~~~~~~~viPv~~~ 110 (364)
.+.. ++||.++
T Consensus 77 ---~~~~-iipv~~~ 87 (102)
T PF13676_consen 77 ---RGKP-IIPVRLD 87 (102)
T ss_dssp ---TSES-EEEEECS
T ss_pred ---CCCE-EEEEEEC
Confidence 3333 9999864
No 8
>PF05729 NACHT: NACHT domain
Probab=99.34 E-value=1.2e-11 Score=102.40 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=82.9
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccc-----cceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFE-----GSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINI 287 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 287 (364)
+++.|+|.+|+||||+++.++..+..... ...++...+...... ....+...+...... ..........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~----~~~~~~~~~~- 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSN-NSRSLADLLFDQLPE----SIAPIEELLQ- 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcc-ccchHHHHHHHhhcc----chhhhHHHHH-
Confidence 47899999999999999999988665432 122232233222221 112333333333211 1111111111
Q ss_pred HHHhcCCCeEEEEEecCCCHHH---------HHHHh-ccCCC-CCCCcEEEEEeCChhh---hhhCCCCceeeCCCCCHh
Q 036738 288 LGSRLQHKKVLLVIDDVIDSKQ---------LEYLA-GKHGW-YGSGSRIIITSRDEGL---LKTNRVDEVYKPNGLNYN 353 (364)
Q Consensus 288 l~~~l~~~~~LlVlDdv~~~~~---------~~~l~-~~~~~-~~~gs~iliTtr~~~v---~~~~~~~~~~~l~~L~~~ 353 (364)
......++++||||++++... +..+. ..+.. ..++++++||+|.... .........++|++|+++
T Consensus 75 -~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 75 -ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred -HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 112267899999999964321 12222 22221 2468999999998765 333334468999999999
Q ss_pred HHHHHHhhc
Q 036738 354 EALQLFNMK 362 (364)
Q Consensus 354 ea~~L~~~~ 362 (364)
+..+++.++
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999998764
No 9
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.3e-11 Score=111.53 Aligned_cols=145 Identities=26% Similarity=0.384 Sum_probs=98.4
Q ss_pred ccccccccccchhHH---HHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 184 PKILKKLVGIDSRLE---ELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~---~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
|.....++|.+..+. -|..++.. +++....+|||||+||||||+.++......|...--+ ..++.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~---~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvk 87 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA---GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVK 87 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc---CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHH
Confidence 455567888776653 45556655 5677899999999999999999999877665422111 10222
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEE--EeCChhhh
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIII--TSRDEGLL 336 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ili--Ttr~~~v~ 336 (364)
. ++++++.. -.....+++.+|++|+|+ +..|-+.|++.+ ..|.-++| ||.|+...
T Consensus 88 d-lr~i~e~a-----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ 146 (436)
T COG2256 88 D-LREIIEEA-----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFE 146 (436)
T ss_pred H-HHHHHHHH-----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCee
Confidence 2 22222221 122335899999999996 667777887776 46766776 88887533
Q ss_pred hh---CCCCceeeCCCCCHhHHHHHHhh
Q 036738 337 KT---NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 337 ~~---~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.. .....++++++|+.+|-.+++.+
T Consensus 147 ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 147 LNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred ecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 22 23457999999999999999876
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=7.9e-11 Score=111.78 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=109.1
Q ss_pred ccccccccchhHHHHHHhhcCC-CCCCceEEEEEccCccchHHHHHHHHHHhhccccc--ceEEeeccccccccCCHHHH
Q 036738 186 ILKKLVGIDSRLEELRFLMDKG-PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEG--SSFLANVREKSEREGGVISF 262 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~ 262 (364)
.++.|+||+.++++|...|... .+.....+.|+|++|+|||++++.+++.+...... .+++. . . ...+...+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~-~~~~~~~~ 102 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---Q-IDRTRYAI 102 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---C-cCCCHHHH
Confidence 5678999999999999987442 11345568899999999999999999987655422 23333 1 1 11255677
Q ss_pred HHHHHHHHhcCC-CCCccChhhhHHHHHHhcC--CCeEEEEEecCCCHH------HHHHHhccCCCCC-CCcEEEEEeCC
Q 036738 263 QRQLVSQLLKLT-DNRIWNEDDGINILGSRLQ--HKKVLLVIDDVIDSK------QLEYLAGKHGWYG-SGSRIIITSRD 332 (364)
Q Consensus 263 ~~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~-~gs~iliTtr~ 332 (364)
+..++.++.... +....+..+....+.+.+. ++..+||||+++... .+..+........ ....+|.++.+
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 788888876522 2222344555666666664 467899999997542 3444443222111 12335666655
Q ss_pred hhhhhhCC-------CCceeeCCCCCHhHHHHHHhhc
Q 036738 333 EGLLKTNR-------VDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 333 ~~v~~~~~-------~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..... ....+.+++++.++..+++..+
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r 219 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDR 219 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHH
Confidence 43332211 1246789999999999988754
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.25 E-value=2.3e-10 Score=107.48 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=104.7
Q ss_pred cccccccccchhHHHHHHhhcCC-CCCCceEEEEEccCccchHHHHHHHHHHhhcccc------cceEEeeccccccccC
Q 036738 185 KILKKLVGIDSRLEELRFLMDKG-PSADVRMIGICGMGGLGKTTLARVIYDLISHEFE------GSSFLANVREKSEREG 257 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 257 (364)
..+..|+||+.+++.|...|... .+.....+.|+|++|+|||++++.+++.+..... ..+|+.. .. ..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~----~~-~~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC----QI-LD 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC----CC-CC
Confidence 34568999999999999988641 1134567899999999999999999987654322 1233331 11 12
Q ss_pred CHHHHHHHHHHHHhc--C-CCCCccChhhhHHHHHHhc--CCCeEEEEEecCCCH-----HHHHHHhcc--CCCC-CCCc
Q 036738 258 GVISFQRQLVSQLLK--L-TDNRIWNEDDGINILGSRL--QHKKVLLVIDDVIDS-----KQLEYLAGK--HGWY-GSGS 324 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~--~-~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~-----~~~~~l~~~--~~~~-~~gs 324 (364)
+...++..++.++.. . .+....+..+....+.+.+ .+++.+||||+++.. ..+..+... .... +...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 456777788887742 1 1111123334444555555 356889999999755 123333322 1111 1233
Q ss_pred EEEEEeCChhhhhhCC-------CCceeeCCCCCHhHHHHHHhhc
Q 036738 325 RIIITSRDEGLLKTNR-------VDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 325 ~iliTtr~~~v~~~~~-------~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.+|.++.......... ....+.+++++.+|..+++..+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r 211 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENR 211 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHH
Confidence 4555565443322111 1246789999999999998765
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=1.4e-10 Score=101.67 Aligned_cols=166 Identities=21% Similarity=0.222 Sum_probs=82.1
Q ss_pred ccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHH------H
Q 036738 190 LVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISF------Q 263 (364)
Q Consensus 190 ~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~------~ 263 (364)
|+||+.+++.|.+++.. +..+.+.|+|+.|+|||+|++.+.+.........+|+......... ..... .
T Consensus 1 F~gR~~el~~l~~~l~~---~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLES---GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh---hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHH
Confidence 79999999999999876 3356899999999999999999999875543344554422211110 11111 1
Q ss_pred HHHHHHHhcCCC-CC--------ccChhhhHHHHHHhc--CCCeEEEEEecCCCHH-----------HHHHHhccCCCCC
Q 036738 264 RQLVSQLLKLTD-NR--------IWNEDDGINILGSRL--QHKKVLLVIDDVIDSK-----------QLEYLAGKHGWYG 321 (364)
Q Consensus 264 ~~l~~~l~~~~~-~~--------~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~-----------~~~~l~~~~~~~~ 321 (364)
..+...+....+ .. ..........+.+.+ .+++++|||||+.... .+..+...... .
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 154 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-Q 154 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-c
Confidence 111111111111 00 111122223333333 3345999999985433 12223332222 2
Q ss_pred CCcEEEEEeCChhhhhh--------CCCCceeeCCCCCHhHHHHHHhh
Q 036738 322 SGSRIIITSRDEGLLKT--------NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 322 ~gs~iliTtr~~~v~~~--------~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
....++++.....+... .+....+.|++|+.+++++++..
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~ 202 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKE 202 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHH
Confidence 33345555544443332 22334589999999999999875
No 13
>PRK06893 DNA replication initiation factor; Validated
Probab=99.08 E-value=1e-09 Score=95.92 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=73.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
..+.+.|+|++|+|||+|+..+++.+..+.....|+.. .. ....... +.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~----~~~~~~~----------------------~~~ 87 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SK----SQYFSPA----------------------VLE 87 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HH----hhhhhHH----------------------HHh
Confidence 34678999999999999999999987655445566551 00 0000001 111
Q ss_pred hcCCCeEEEEEecCCCH---HHHH-HHhccCCCC-CCCcEEEEE-eCC---------hhhhhhCCCCceeeCCCCCHhHH
Q 036738 291 RLQHKKVLLVIDDVIDS---KQLE-YLAGKHGWY-GSGSRIIIT-SRD---------EGLLKTNRVDEVYKPNGLNYNEA 355 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~iliT-tr~---------~~v~~~~~~~~~~~l~~L~~~ea 355 (364)
.+. +.-+|+|||++.. ..|+ .+...+... ..++.+||+ +.. +++...+..+.+++++++++++.
T Consensus 88 ~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 88 NLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred hcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 111 3358999999742 2332 222212111 235566554 443 34555555567899999999999
Q ss_pred HHHHhhcC
Q 036738 356 LQLFNMKA 363 (364)
Q Consensus 356 ~~L~~~~a 363 (364)
+++|.+++
T Consensus 167 ~~iL~~~a 174 (229)
T PRK06893 167 IIVLQRNA 174 (229)
T ss_pred HHHHHHHH
Confidence 99998765
No 14
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.98 E-value=9.1e-10 Score=92.95 Aligned_cols=51 Identities=33% Similarity=0.539 Sum_probs=36.0
Q ss_pred cccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 189 KLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.|+||+.+++++...|........+.+.|+|++|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999953333567899999999999999999999987766
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.96 E-value=8.2e-09 Score=98.26 Aligned_cols=146 Identities=25% Similarity=0.369 Sum_probs=88.6
Q ss_pred ccccccccccchhHHH---HHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 184 PKILKKLVGIDSRLEE---LRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~---l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
|.....|+|++..+.. |..++.. ...+.+.|+|++|+||||||+.+++.....|.. +.. .. . +.
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~---~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a---~~--~-~~- 74 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA---GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA---VT--S-GV- 74 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec---cc--c-cH-
Confidence 3445679999988766 7777765 345578899999999999999999877554321 110 00 0 11
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEE--EeCChhhh
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIII--TSRDEGLL 336 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ili--Ttr~~~v~ 336 (364)
..++.++.... .....+++.+|+||+++. ..+.+.+...+. .+..++| ||.++...
T Consensus 75 ~~ir~ii~~~~-----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~ 134 (413)
T PRK13342 75 KDLREVIEEAR-----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFE 134 (413)
T ss_pred HHHHHHHHHHH-----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhh
Confidence 11112222110 011245778999999974 345566665543 3444554 34443211
Q ss_pred ---hhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 337 ---KTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 337 ---~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.......++.+.+++.++..++|.+.
T Consensus 135 l~~aL~SR~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 135 VNPALLSRAQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred ccHHHhccceeeEeCCCCHHHHHHHHHHH
Confidence 11122368899999999999998763
No 16
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.94 E-value=5.2e-09 Score=93.50 Aligned_cols=150 Identities=23% Similarity=0.310 Sum_probs=97.5
Q ss_pred cccccccccccchhHHH---HHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCH
Q 036738 183 KPKILKKLVGIDSRLEE---LRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGV 259 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~---l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 259 (364)
.|.....+||.+..+.+ |++++.. +..+.+.+||++|+||||||+.++..-+.+- ..|+. . +... .-
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq---~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-l---SAt~-a~ 202 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQ---NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-L---SATN-AK 202 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHc---CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-E---eccc-cc
Confidence 45556677887766553 4444544 6678899999999999999999998655441 23443 2 2111 11
Q ss_pred HHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEE--EeCChhh
Q 036738 260 ISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIII--TSRDEGL 335 (364)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ili--Ttr~~~v 335 (364)
.+-++.++++.- -...+..+|.+|.+|+|+ +..|-+.|++.. ..|..++| ||.|+..
T Consensus 203 t~dvR~ife~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 203 TNDVRDIFEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSF 263 (554)
T ss_pred hHHHHHHHHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCcc
Confidence 222233333211 112346789999999995 666777777765 46777777 8888754
Q ss_pred hhh---CCCCceeeCCCCCHhHHHHHHhh
Q 036738 336 LKT---NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 336 ~~~---~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
-.. +....++.+++|+.++...+|.+
T Consensus 264 qln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 264 QLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred chhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 322 23456889999999998888865
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=3.6e-08 Score=88.52 Aligned_cols=142 Identities=21% Similarity=0.174 Sum_probs=79.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH-
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG- 289 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~- 289 (364)
+.+.+.|+|++|+|||||++.+++.+...--..+++. .... +...++..++..+..... ..+.......+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~-~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~ 113 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRV-DAEDLLRMVAADFGLETE--GRDKAALLRELED 113 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCC-CHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHH
Confidence 3457899999999999999999988763211112222 1112 455677777766533221 122222222222
Q ss_pred ---Hh-cCCCeEEEEEecCCCH--HHHHHHhccC---CCCCCCcEEEEEeCChhhhhhC----------CCCceeeCCCC
Q 036738 290 ---SR-LQHKKVLLVIDDVIDS--KQLEYLAGKH---GWYGSGSRIIITSRDEGLLKTN----------RVDEVYKPNGL 350 (364)
Q Consensus 290 ---~~-l~~~~~LlVlDdv~~~--~~~~~l~~~~---~~~~~gs~iliTtr~~~v~~~~----------~~~~~~~l~~L 350 (364)
.. ..+++.+||+||++.. ..++.+.... ........|++|.... +.... .....+++++|
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 22 2678899999999754 3444443211 1111223445554432 21111 11346789999
Q ss_pred CHhHHHHHHhh
Q 036738 351 NYNEALQLFNM 361 (364)
Q Consensus 351 ~~~ea~~L~~~ 361 (364)
+.+|..+++..
T Consensus 193 ~~~e~~~~l~~ 203 (269)
T TIGR03015 193 DREETREYIEH 203 (269)
T ss_pred CHHHHHHHHHH
Confidence 99999998864
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=1.9e-08 Score=105.61 Aligned_cols=165 Identities=21% Similarity=0.182 Sum_probs=96.1
Q ss_pred cccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHH
Q 036738 183 KPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
+|..+..++-|...++.+... ...+++.|.||+|.||||++..+++.. +.+.|+. +... ..+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~------~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~---d~~~~~f 74 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA------NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDES---DNQPERF 74 (903)
T ss_pred CCCCccccCcchHHHHHHhcc------cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCcc---cCCHHHH
Confidence 445566788888776666432 356789999999999999999988643 2567775 3221 1244445
Q ss_pred HHHHHHHHhcCCCCC------------ccChhhhHHHHHHhc-C-CCeEEEEEecCCCH---HHHHHHhccCCCCCCCcE
Q 036738 263 QRQLVSQLLKLTDNR------------IWNEDDGINILGSRL-Q-HKKVLLVIDDVIDS---KQLEYLAGKHGWYGSGSR 325 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~------------~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ 325 (364)
...++..+....... ..+.......+...+ . +.+++|||||++.. ...+.+...+....++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 555555553211110 011222222232222 2 68999999999642 222233222332346778
Q ss_pred EEEEeCChhhhh--hC-CCCceeeCC----CCCHhHHHHHHhh
Q 036738 326 IIITSRDEGLLK--TN-RVDEVYKPN----GLNYNEALQLFNM 361 (364)
Q Consensus 326 iliTtr~~~v~~--~~-~~~~~~~l~----~L~~~ea~~L~~~ 361 (364)
+|||||...-.. .. ......++. +|+.+|+.+||..
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~ 197 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQ 197 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHh
Confidence 999999842111 10 112345566 9999999999964
No 19
>PTZ00202 tuzin; Provisional
Probab=98.91 E-value=6.2e-08 Score=89.66 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=103.9
Q ss_pred cccccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 181 RVKPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 181 ~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
...|.....|+||+.++..|...|...+....+++.|.|++|+|||||++.+..... ...++.+.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHH
Confidence 356778899999999999999999765545567999999999999999999997654 224443222 457
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhc-----C-CCeEEEEEe--cCCCHHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRL-----Q-HKKVLLVID--DVIDSKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlD--dv~~~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
.++..++.+++.... ....++...|.+.+ . +++.+||+- +-.+......-.-.+.....-|+|++----
T Consensus 324 ElLr~LL~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpl 400 (550)
T PTZ00202 324 DTLRSVVKALGVPNV---EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHHHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehH
Confidence 888888888865322 22233333333332 3 566666654 223332221111112222456888886543
Q ss_pred hhhhhh---CCCCceeeCCCCCHhHHHHHHh
Q 036738 333 EGLLKT---NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 333 ~~v~~~---~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
+.+... +..-..|.+++++.++|.+.-.
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQ 431 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHh
Confidence 332211 1234578999999999987643
No 20
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.85 E-value=6.1e-08 Score=96.44 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=100.2
Q ss_pred cccccccccchhHHHHHHhhcCC--CCCCceEEEEEccCccchHHHHHHHHHHhhcc-----cc--cceEEeeccccccc
Q 036738 185 KILKKLVGIDSRLEELRFLMDKG--PSADVRMIGICGMGGLGKTTLARVIYDLISHE-----FE--GSSFLANVREKSER 255 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~--~~~~~~~~~~~~~~ 255 (364)
..|+.+.||+.++++|...|... ......++.|+|++|+|||++++.+.+++... .+ ..+++.+. .
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm-----~ 826 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM-----N 826 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC-----c
Confidence 45678999999999998887641 11334567899999999999999999876432 22 12334321 1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcC---CCeEEEEEecCCCHH-----HHHHHhccCCCCCCCcEEE
Q 036738 256 EGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQ---HKKVLLVIDDVIDSK-----QLEYLAGKHGWYGSGSRII 327 (364)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~il 327 (364)
......+...|..++.+..+.......+....+...+. ....+||||+++... .+-.|..... ..+++|+
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLi 904 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLV 904 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEE
Confidence 11455666777777755444333333334444444431 234689999997432 2322222211 2344544
Q ss_pred E--EeCChh--------hhhhCCCCceeeCCCCCHhHHHHHHhhcC
Q 036738 328 I--TSRDEG--------LLKTNRVDEVYKPNGLNYNEALQLFNMKA 363 (364)
Q Consensus 328 i--Ttr~~~--------v~~~~~~~~~~~l~~L~~~ea~~L~~~~a 363 (364)
| +|.+-+ +...++ ...+..+|++.+|-.++|..++
T Consensus 905 LIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RA 949 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERL 949 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHH
Confidence 4 333221 222222 2235679999999999997654
No 21
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.85 E-value=4.7e-08 Score=78.70 Aligned_cols=45 Identities=33% Similarity=0.434 Sum_probs=37.1
Q ss_pred cccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 191 VGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 191 ~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.|++..+..+...+.. ...+.+.|+|++|+|||+|++.+++.+..
T Consensus 1 ~~~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~~~~ 45 (151)
T cd00009 1 VGQEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANELFR 45 (151)
T ss_pred CchHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3678888888888765 23567899999999999999999998753
No 22
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.84 E-value=3.5e-08 Score=91.65 Aligned_cols=172 Identities=17% Similarity=0.142 Sum_probs=89.7
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc-cc-ceEEeeccccccccCCHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF-EG-SSFLANVREKSEREGGVIS 261 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~ 261 (364)
|.....++|++..++.|..++... ..+.+.++|++|+||||+|+.+++.+.... .. ..++. ........ ...
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~--~~~ 84 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP---NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG--KKY 84 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc--hhh
Confidence 444567899999999999988653 334678999999999999999998875432 22 12222 11100000 000
Q ss_pred HHH--HHHHHHhcCCCCCccChhhhHHHHH---Hhc--CCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 262 FQR--QLVSQLLKLTDNRIWNEDDGINILG---SRL--QHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 262 ~~~--~l~~~l~~~~~~~~~~~~~~~~~l~---~~l--~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
+.. .....+...........+.....+. ... ...+-+|||||++.. .....+...+......+++|+|+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 000 0000000000000000111111111 111 133458999999643 2333344333333456778887755
Q ss_pred hh-hhhhC-CCCceeeCCCCCHhHHHHHHhh
Q 036738 333 EG-LLKTN-RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.. +...+ .....+++.+++.++...++.+
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~ 195 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLES 195 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHH
Confidence 32 22211 2345788999999998888765
No 23
>PF13173 AAA_14: AAA domain
Probab=98.81 E-value=1.4e-08 Score=80.44 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=75.2
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL 292 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (364)
+++.|.|+-|+|||||++.+++.+. .-....++. ..... ..... ..+ ..+.+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~~~--~~~~~----------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDDPR--DRRLA----------------DPD-LLEYFLELI 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCCHH--HHHHh----------------hhh-hHHHHHHhh
Confidence 5789999999999999999998765 223344444 11111 00000 000 122333334
Q ss_pred CCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh------CCCCceeeCCCCCHhHH
Q 036738 293 QHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT------NRVDEVYKPNGLNYNEA 355 (364)
Q Consensus 293 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~------~~~~~~~~l~~L~~~ea 355 (364)
..+..+|+||++.....|......+....+..+|++|+.+...... .+....++|.||+-.|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4477899999998887777766655544556899999888655532 12234679999998773
No 24
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.81 E-value=3.8e-08 Score=78.10 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=71.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc-----cccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE-----FEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGI 285 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 285 (364)
..+.+.|+|++|+|||++++.+++.+... -...+|+. ..... ....+...++..+...... ..+..++.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~l~ 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSR-TPRDFAQEILEALGLPLKS-RQTSDELR 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHS-SHHHHHHHHHHHHT-SSSS-TS-HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCC-CHHHHHHHHHHHhCccccc-cCCHHHHH
Confidence 35678999999999999999999876542 12334544 12222 6788888888887655433 34556666
Q ss_pred HHHHHhcCC-CeEEEEEecCCCH---HHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 286 NILGSRLQH-KKVLLVIDDVIDS---KQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 286 ~~l~~~l~~-~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
..+.+.+.. +..+|||||++.. ..++.+..... ..+..+|+..+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 667766654 4469999999654 44555544433 567778887765
No 25
>PLN03025 replication factor C subunit; Provisional
Probab=98.81 E-value=4.9e-08 Score=89.81 Aligned_cols=156 Identities=15% Similarity=0.234 Sum_probs=89.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc-ccccceEEeeccccccccCCHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH-EFEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
|.....++|.+..+..|..++..+ ..+.+.++|++|+||||+|..+++.+.. .|...+.-.+ .++.. +. ..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~-~~-~~ 80 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG---NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDR-GI-DV 80 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccc-cH-HH
Confidence 445567899999899998887653 3445789999999999999999998643 2322111110 11111 11 11
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCh-hhhhhC
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRDE-GLLKTN 339 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~~-~v~~~~ 339 (364)
.+.+......... ....++.-++|||+++.. .....+...+......+++++++... .+....
T Consensus 81 vr~~i~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 81 VRNKIKMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 2222221110000 000245679999999743 33344444443334567777766442 222111
Q ss_pred -CCCceeeCCCCCHhHHHHHHhh
Q 036738 340 -RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 340 -~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.....++++++++++....+.+
T Consensus 147 ~SRc~~i~f~~l~~~~l~~~L~~ 169 (319)
T PLN03025 147 QSRCAIVRFSRLSDQEILGRLMK 169 (319)
T ss_pred HHhhhcccCCCCCHHHHHHHHHH
Confidence 1235789999999998877764
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.80 E-value=8.1e-09 Score=94.51 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=41.6
Q ss_pred ccccccchhHHHHHHhhcCC--CCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 188 KKLVGIDSRLEELRFLMDKG--PSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..|+|++..++.|..++... .......+.|+|++|+|||+||+.+++.+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 56999999999998887531 11345568899999999999999999987643
No 27
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=9.8e-08 Score=94.28 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=95.4
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|....+++|.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+...-.. ....+ +.....
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~---------~~~PC-G~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV---------TSQPC-GVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC---------CCCCC-cccHHH
Confidence 445678999999999999998764 234566899999999999999999876432100 00000 111111
Q ss_pred HHHHHH----HhcCCCCCccChhhhHHHHHH---h-cCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQ----LLKLTDNRIWNEDDGINILGS---R-LQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~----l~~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+... +...........++....+.. . ..++.-++|||+++.. ..+..|+..+.....+.++|++|.+.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 111000 000000000111111111111 1 1345568899999744 45667776665545677888887775
Q ss_pred h-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 G-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 ~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
. +... ......+.+.+++.++..+.|.+
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~ 189 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLER 189 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHH
Confidence 3 2222 22346789999999998877754
No 28
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2e-07 Score=86.64 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=109.0
Q ss_pred ccccccccccchhHHHHHHhhcCCC-CCCceEEEEEccCccchHHHHHHHHHHhhccccc--ceEEeeccccccccCCHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGP-SADVRMIGICGMGGLGKTTLARVIYDLISHEFEG--SSFLANVREKSEREGGVI 260 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~ 260 (364)
...+..+.+|+.+++++...|...- +..+..+.|+|++|+|||++++.+++++...... .+++.+. ......
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~-----~~~t~~ 87 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL-----ELRTPY 87 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee-----eCCCHH
Confidence 3455669999999999988765411 1333448999999999999999999998776443 3555422 122677
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhc--CCCeEEEEEecCCCH-----HHHHHHhccCCCCCCCcEEEE--EeC
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRL--QHKKVLLVIDDVIDS-----KQLEYLAGKHGWYGSGSRIII--TSR 331 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ili--Ttr 331 (364)
+++..++.++.. .+.......+....+.+.+ .++..++|||+++.. +.+..|....... .++|++ .+-
T Consensus 88 ~i~~~i~~~~~~-~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n 164 (366)
T COG1474 88 QVLSKILNKLGK-VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSN 164 (366)
T ss_pred HHHHHHHHHcCC-CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEec
Confidence 788888888752 2333344555566666666 458999999999643 2344444433222 344333 343
Q ss_pred Chhh--------hhhCCCCceeeCCCCCHhHHHHHHhhcC
Q 036738 332 DEGL--------LKTNRVDEVYKPNGLNYNEALQLFNMKA 363 (364)
Q Consensus 332 ~~~v--------~~~~~~~~~~~l~~L~~~ea~~L~~~~a 363 (364)
+..+ ...++.. .+..+|-+.+|-..++..++
T Consensus 165 ~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 165 DDKFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERV 203 (366)
T ss_pred cHHHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHH
Confidence 3322 2223222 36788999999888887653
No 29
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.7e-07 Score=87.66 Aligned_cols=166 Identities=13% Similarity=0.150 Sum_probs=92.6
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+....... ..+. ......
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc-~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPC-RKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCC-CCCHHH
Confidence 445677899999999999888753 2345678999999999999999998864321000 0000 000000
Q ss_pred HHHHHHH----hcCCC---CCccChhhhHHHHHHh-cCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQL----LKLTD---NRIWNEDDGINILGSR-LQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~l----~~~~~---~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
.++.... ..... ....+..+..+.+... ..+++-++|||+++.. ..++.++..+......+++|++|.+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 0000000 00000 0000111111111111 1235569999999754 34566666665445566777776553
Q ss_pred -hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 -GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 -~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... .+....+++.+++.++..+.+..
T Consensus 160 ~~l~~tI~SRc~~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKY 189 (363)
T ss_pred HhhhHHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 33222 22346889999999998887754
No 30
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.76 E-value=8.3e-08 Score=83.81 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=80.1
Q ss_pred cccccc--cchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHH
Q 036738 187 LKKLVG--IDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQR 264 (364)
Q Consensus 187 ~~~~~G--r~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 264 (364)
.++|++ .+..++.+.+++.. .....+.|+|++|+|||+||+.+++.........+++. ...+..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-----------~~~~~~ 79 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-----------LAELAQ 79 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-----------HHHHHH
Confidence 345552 34467777777643 44568999999999999999999987654433334443 111111
Q ss_pred HHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHH---H-HHHHhccCCC-CCCCcEEEEEeCChh-----
Q 036738 265 QLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK---Q-LEYLAGKHGW-YGSGSRIIITSRDEG----- 334 (364)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~iliTtr~~~----- 334 (364)
.. .. +...+.+ .-+|||||++... . .+.+...+.. ...+..+|+||+...
T Consensus 80 ~~-~~------------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 80 AD-PE------------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred hH-HH------------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 00 00 0111222 2389999996432 1 2233222211 023447888887532
Q ss_pred ----hhhhCCCCceeeCCCCCHhHHHHHHhh
Q 036738 335 ----LLKTNRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 335 ----v~~~~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+...+.....+++++++.+|...++.+
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHH
Confidence 111222245789999999998888865
No 31
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.76 E-value=2.1e-08 Score=91.97 Aligned_cols=94 Identities=29% Similarity=0.470 Sum_probs=79.2
Q ss_pred CCCCcccEEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeeccccc-------
Q 036738 9 VSHWTYDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYAS------- 81 (364)
Q Consensus 9 ~~~~~~dvfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~------- 81 (364)
+.....||||||+..-. +..|+-|.-.|.-+||+||+|-+.+-.|. |...+.+.+..++.+|+|+||+.+.
T Consensus 608 ~~skq~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~n 685 (832)
T KOG3678|consen 608 MLSKQIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN 685 (832)
T ss_pred cccCCcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence 45678999999986643 67999999999999999999998888886 5678889999999999999999865
Q ss_pred -CcccHHHHHHHHHhhhcCCCeeEEeEEe
Q 036738 82 -STWCLDELVHILDCKNKNAQRMVYPIFY 109 (364)
Q Consensus 82 -s~~~~~El~~~~~~~~~~~~~~viPv~~ 109 (364)
-+|...|+.-++.+++. |||||-
T Consensus 686 CeDWVHKEl~~Afe~~KN-----IiPI~D 709 (832)
T KOG3678|consen 686 CEDWVHKELKCAFEHQKN-----IIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHHHhcCC-----eeeeec
Confidence 34777788878877765 999985
No 32
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=6.7e-08 Score=93.50 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=94.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc--ccccceEEeecc-ccc-cccCCH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH--EFEGSSFLANVR-EKS-EREGGV 259 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~-~~~-~~~~~~ 259 (364)
|.....++|.+...+.|..++... .-.+.+.++|++|+||||+|+.+++.+.. .+...|+.+..- ... ....++
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 444567899999999998888764 33456799999999999999999998642 222233332100 000 000000
Q ss_pred HHHHHHHHHHHhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCh-hh
Q 036738 260 ISFQRQLVSQLLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDE-GL 335 (364)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~-~v 335 (364)
. .+............++...+... ..+++-++|||+++. ...+..|+..+......+.+|++|.+. .+
T Consensus 88 ~--------el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 88 L--------EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred E--------EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 0 00000000011111111111111 134566899999974 355666766665444555666665443 33
Q ss_pred hhhC-CCCceeeCCCCCHhHHHHHHhh
Q 036738 336 LKTN-RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.... .....+++.+++.++....+.+
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~ 186 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRR 186 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHH
Confidence 2222 2346889999999999888865
No 33
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.74 E-value=5.9e-08 Score=97.46 Aligned_cols=145 Identities=28% Similarity=0.360 Sum_probs=86.2
Q ss_pred ccccccccccchhHH---HHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 184 PKILKKLVGIDSRLE---ELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~---~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
|.....|+|++..+. .+...+.. .....+.|+|++|+||||||+.+++.....|. .+.. .. . ...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna----~~-~-~i~ 91 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA----VL-A-GVK 91 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh----hh-h-hhH
Confidence 445567899998874 46666654 34567899999999999999999987765441 1110 00 0 111
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhc--CCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEE--EeCChh
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRL--QHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIII--TSRDEG 334 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ili--Ttr~~~ 334 (364)
. ...++ ......+ .+++.+|+|||++ +..+.+.+.+.+. .+..++| ||.++.
T Consensus 92 d-ir~~i------------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~ 149 (725)
T PRK13341 92 D-LRAEV------------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPY 149 (725)
T ss_pred H-HHHHH------------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChH
Confidence 1 01111 1111111 2467799999996 4455566665442 4555555 344432
Q ss_pred --hhhh-CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 335 --LLKT-NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 335 --v~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+... .....++.+++|+.++...++.+.
T Consensus 150 ~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~ 180 (725)
T PRK13341 150 FEVNKALVSRSRLFRLKSLSDEDLHQLLKRA 180 (725)
T ss_pred hhhhhHhhccccceecCCCCHHHHHHHHHHH
Confidence 1111 112457899999999999988753
No 34
>PRK08727 hypothetical protein; Validated
Probab=98.74 E-value=1.3e-07 Score=82.82 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=81.0
Q ss_pred cccccccc-hhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHH
Q 036738 187 LKKLVGID-SRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQ 265 (364)
Q Consensus 187 ~~~~~Gr~-~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (364)
..+|++.. ..+..+..+... .....+.|+|++|+|||.|+..+++....+.....|+. .......
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~---~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-----------~~~~~~~ 83 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAG---QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-----------LQAAAGR 83 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-----------HHHhhhh
Confidence 34566544 334444443322 23346999999999999999999988665533445554 1111111
Q ss_pred HHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH---HHH-HHHhccCCC-CCCCcEEEEEeCCh-------
Q 036738 266 LVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS---KQL-EYLAGKHGW-YGSGSRIIITSRDE------- 333 (364)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~iliTtr~~------- 333 (364)
+.. .+. .+ .+..+|||||+... ..+ ..+...+.. ...+..||+||+..
T Consensus 84 ~~~------------------~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 84 LRD------------------ALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred HHH------------------HHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhh
Confidence 110 011 11 13358999999622 112 122221111 12466799999863
Q ss_pred --hhhhhCCCCceeeCCCCCHhHHHHHHhhcC
Q 036738 334 --GLLKTNRVDEVYKPNGLNYNEALQLFNMKA 363 (364)
Q Consensus 334 --~v~~~~~~~~~~~l~~L~~~ea~~L~~~~a 363 (364)
++...+.....+++++++.++-.+++.+++
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 222223335688999999999999998754
No 35
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.2e-07 Score=95.33 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=96.0
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc--c-ceEEeec-cccccc-cCC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE--G-SSFLANV-REKSER-EGG 258 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~~~-~~~~~~-~~~ 258 (364)
|.....++|.+..+..|..++..+ .-...+.++|+.|+||||+|+.+++.+..... . -|..|.. ...... +.+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 445677999999999999988753 23345689999999999999999998754210 0 0111100 000000 000
Q ss_pred HHHHHHHHHHHHhcCCCCCccChhhhHHHHHH-hcCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCC-hh
Q 036738 259 VISFQRQLVSQLLKLTDNRIWNEDDGINILGS-RLQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRD-EG 334 (364)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~-~~ 334 (364)
+ ..+.........+..++...+.. -..+++-++|||+++ +......|+..+......+++|++|.+ ..
T Consensus 90 v--------iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 90 L--------IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred E--------EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 0 00000000001111111222211 124567799999997 456777777777655566777776555 33
Q ss_pred hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 335 LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 335 v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+... ......|++.+|+.++..+.+.+
T Consensus 162 Ll~TIlSRCq~f~fkpLs~eEI~~~L~~ 189 (944)
T PRK14949 162 LPVTVLSRCLQFNLKSLTQDEIGTQLNH 189 (944)
T ss_pred chHHHHHhheEEeCCCCCHHHHHHHHHH
Confidence 3322 22346899999999999888765
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.74 E-value=4.2e-08 Score=90.61 Aligned_cols=56 Identities=29% Similarity=0.500 Sum_probs=44.6
Q ss_pred ccccccccccchhHHHHHHhhcCC--CCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKG--PSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
|.....|+|++..++.+..++... .......+.|+|++|+|||+||+.+++.+...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 456678999999999998877531 11445678999999999999999999987643
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.72 E-value=1.3e-07 Score=88.75 Aligned_cols=154 Identities=15% Similarity=0.242 Sum_probs=88.8
Q ss_pred ccccccccchhHHHHHHhhcCCC----------CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccc
Q 036738 186 ILKKLVGIDSRLEELRFLMDKGP----------SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSER 255 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 255 (364)
....+.|++.++++|.+.+...- -..++-+.|+|++|+|||+||+.+++.....|- ...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~-----~v~------ 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI-----RVV------ 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEE-----ecc------
Confidence 34568899999999887653210 023456899999999999999999998765432 100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCC
Q 036738 256 EGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGW 319 (364)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~ 319 (364)
...+....... ........+...-...+.+|+|||++.. ..+..+...+..
T Consensus 189 ---~~~l~~~~~g~----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 ---GSELVRKYIGE----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred ---hHHHHHHhhhH----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 01111111000 0001111122222446789999998643 122233322221
Q ss_pred C--CCCcEEEEEeCChhhhh-----hCCCCceeeCCCCCHhHHHHHHhhcC
Q 036738 320 Y--GSGSRIIITSRDEGLLK-----TNRVDEVYKPNGLNYNEALQLFNMKA 363 (364)
Q Consensus 320 ~--~~gs~iliTtr~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~a 363 (364)
+ ..+..||.||....... ....+..++++..+.++..++|..++
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH
Confidence 1 23567788887543222 11235678999999999999987653
No 38
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=8.2e-08 Score=93.73 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=94.7
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+.....|..++..+ .-.+.+.++|+.|+||||+|+.+++.+..... .. ...+ +.....
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-----~~pC-g~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-----STPC-EVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-----CCCC-ccCHHH
Confidence 445677899999999999998764 23467799999999999999999988643210 00 0000 000000
Q ss_pred HHHHHH----HhcCCCCCccChhhhHHHHHH---h-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQ----LLKLTDNRIWNEDDGINILGS---R-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~----l~~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+... +...........++....+.. . ..+++-++|||+++. ......|+..+.....++++|++|.+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 001000 000000000111111111111 1 135666899999974 456666766665545667788877664
Q ss_pred h-hh-hhCCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 G-LL-KTNRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 ~-v~-~~~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
. +. ........+++.+++.++..+.+.+
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~ 188 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGA 188 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHH
Confidence 2 21 1123346889999999998877753
No 39
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.72 E-value=2.1e-07 Score=79.00 Aligned_cols=149 Identities=26% Similarity=0.283 Sum_probs=77.2
Q ss_pred cccccccccccchhHHHHHHhhcC--CCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 183 KPKILKKLVGIDSRLEELRFLMDK--GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~l~~~L~~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
.|....+|+|.++.+..+.-++.. ..++....+.+|||||+||||||..+++.....|. +.. ....+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s--g~~i~k~---- 89 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS--GPAIEKA---- 89 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE--CCC--SC----
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc--chhhhhH----
Confidence 455678999999999887665542 11255778999999999999999999998877653 111 0000001
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCC--CHHHHHHHhccCCCC--------CC--------
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVI--DSKQLEYLAGKHGWY--------GS-------- 322 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~--------~~-------- 322 (364)
.++...+. .+ +++-+|.+|+++ +..+-+.|.+.+..+ ++
T Consensus 90 ---------------------~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 90 ---------------------GDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp ---------------------HHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred ---------------------HHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 11111111 12 234588889997 444444454433211 11
Q ss_pred ---CcEEEEEeCChhhhhhCC--CCceeeCCCCCHhHHHHHHhhcC
Q 036738 323 ---GSRIIITSRDEGLLKTNR--VDEVYKPNGLNYNEALQLFNMKA 363 (364)
Q Consensus 323 ---gs~iliTtr~~~v~~~~~--~~~~~~l~~L~~~ea~~L~~~~a 363 (364)
-+-|=.|||...+...+. ..-+.+++..+.+|-.+++.+.|
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHH
Confidence 122334677654443332 22355899999999988887543
No 40
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1.6e-07 Score=91.59 Aligned_cols=170 Identities=13% Similarity=0.152 Sum_probs=95.5
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccccc-ceEEeeccccccccCCHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEG-SSFLANVREKSEREGGVISF 262 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~ 262 (364)
|.....++|.+..+..|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+...-.. ..-+ ....+ +....
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PC-G~C~s 83 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPC-GQCRA 83 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCC-cccHH
Confidence 445677999999999999998764 234567899999999999999999987532100 0000 00000 00011
Q ss_pred HHHHHHH----HhcCCCCCccChhhhHHHHHHh----cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 263 QRQLVSQ----LLKLTDNRIWNEDDGINILGSR----LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 263 ~~~l~~~----l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
...+... +...........++..+.+... ..++.-++|||+++ +....+.|+..+.....++.+|++|.+
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 1111000 0000000011122222222111 14566799999997 446677777777655566776666655
Q ss_pred h-hhhhhC-CCCceeeCCCCCHhHHHHHHhh
Q 036738 333 E-GLLKTN-RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
. .+...+ .....+.+.+++.++..+.+.+
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHH
Confidence 3 333221 2245788999999988877653
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.70 E-value=3.5e-07 Score=84.20 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=88.6
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|++..++.+..++... ..+.+.|+|++|+||||+++.+++.+........++.. . .+... ... ..
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~---~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~-~-~~~~~-~~~-~~ 85 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK---NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL-N-ASDER-GID-VI 85 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe-c-ccccc-chH-HH
Confidence 344566899999999999998753 33457999999999999999999886443111112210 0 01111 111 11
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-C
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT-N 339 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~-~ 339 (364)
...+..+....+. ....+-+|++|+++.. .....+...+......+.+|+++.... +... .
T Consensus 86 ~~~i~~~~~~~~~---------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~ 150 (319)
T PRK00440 86 RNKIKEFARTAPV---------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150 (319)
T ss_pred HHHHHHHHhcCCC---------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH
Confidence 1111111111000 0123568999998643 334445444443345667777764321 2111 1
Q ss_pred CCCceeeCCCCCHhHHHHHHhhc
Q 036738 340 RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 340 ~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.....+++++++.++....+...
T Consensus 151 sr~~~~~~~~l~~~ei~~~l~~~ 173 (319)
T PRK00440 151 SRCAVFRFSPLKKEAVAERLRYI 173 (319)
T ss_pred HHhheeeeCCCCHHHHHHHHHHH
Confidence 12346899999999988777653
No 42
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.70 E-value=1.9e-07 Score=81.94 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=79.3
Q ss_pred cccc-ccc-hhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHH
Q 036738 188 KKLV-GID-SRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQ 265 (364)
Q Consensus 188 ~~~~-Gr~-~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (364)
++|+ |.. ..+..+.++... ...+.+.|+|++|+|||+|+..+++.....-....|+.. .....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-----------~~~~~- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ---EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-----------DKRAW- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-----------HHHhh-
Confidence 3444 632 234445555433 234578999999999999999999876544223344431 10000
Q ss_pred HHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH---HHHH----HHhccCCCCCCCcEEEEEeCCh-----
Q 036738 266 LVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS---KQLE----YLAGKHGWYGSGSRIIITSRDE----- 333 (364)
Q Consensus 266 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~----~l~~~~~~~~~gs~iliTtr~~----- 333 (364)
. ..+..+.+. +.-+|+|||+... ..|+ .+...... ....++|+||+++
T Consensus 87 ~--------------~~~~~~~~~-----~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 87 F--------------VPEVLEGME-----QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLN 146 (235)
T ss_pred h--------------hHHHHHHhh-----hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcC
Confidence 0 001111111 1248999999532 2222 22222111 1234799998764
Q ss_pred ----hhhhhCCCCceeeCCCCCHhHHHHHHhhcC
Q 036738 334 ----GLLKTNRVDEVYKPNGLNYNEALQLFNMKA 363 (364)
Q Consensus 334 ----~v~~~~~~~~~~~l~~L~~~ea~~L~~~~a 363 (364)
++...+..+.+++++++++++-.+++.++|
T Consensus 147 ~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 147 LGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred cccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 333344456789999999999999987643
No 43
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.68 E-value=2.8e-07 Score=91.04 Aligned_cols=166 Identities=24% Similarity=0.279 Sum_probs=103.1
Q ss_pred cccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHH
Q 036738 183 KPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
+|..+.+.+-|...++.|... ...+.+.|.-|+|.|||||+..++.+... -..+.|+.. .+...+...+
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~~~~~-~~~v~Wlsl----de~dndp~rF 82 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWRELAAD-GAAVAWLSL----DESDNDPARF 82 (894)
T ss_pred CCCCcccccccHHHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHHhcCc-ccceeEeec----CCccCCHHHH
Confidence 344566777777666555543 45789999999999999999999984443 456778763 2223366777
Q ss_pred HHHHHHHHhcCCCCCc------------cChhhhHHHHHHhc--CCCeEEEEEecCC---CH---HHHHHHhccCCCCCC
Q 036738 263 QRQLVSQLLKLTDNRI------------WNEDDGINILGSRL--QHKKVLLVIDDVI---DS---KQLEYLAGKHGWYGS 322 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~------------~~~~~~~~~l~~~l--~~~~~LlVlDdv~---~~---~~~~~l~~~~~~~~~ 322 (364)
++.++..+....+... .+...+.+.+..-+ -.++++|||||.+ ++ ..+..+.... .+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PE 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CC
Confidence 7777777653332111 12222333333322 2468999999985 33 3455555544 46
Q ss_pred CcEEEEEeCChhhh---hhCCCCceeeCC----CCCHhHHHHHHhhc
Q 036738 323 GSRIIITSRDEGLL---KTNRVDEVYKPN----GLNYNEALQLFNMK 362 (364)
Q Consensus 323 gs~iliTtr~~~v~---~~~~~~~~~~l~----~L~~~ea~~L~~~~ 362 (364)
+-++++|||+.--. ..--.+..++|+ .|+.+|+.++|...
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~ 206 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR 206 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc
Confidence 88999999986321 111122334443 58999999998753
No 44
>PRK09087 hypothetical protein; Validated
Probab=98.68 E-value=2.3e-07 Score=80.69 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=69.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
..+.+.|+|++|+|||+|++.++.... ..|+. ...+...+...+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-----------~~~~~~~~~~~~-------------------- 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-----------PNEIGSDAANAA-------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-----------HHHcchHHHHhh--------------------
Confidence 346789999999999999998886532 22443 111111111111
Q ss_pred hcCCCeEEEEEecCC----CHHHHHHHhccCCCCCCCcEEEEEeCC---------hhhhhhCCCCceeeCCCCCHhHHHH
Q 036738 291 RLQHKKVLLVIDDVI----DSKQLEYLAGKHGWYGSGSRIIITSRD---------EGLLKTNRVDEVYKPNGLNYNEALQ 357 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~----~~~~~~~l~~~~~~~~~gs~iliTtr~---------~~v~~~~~~~~~~~l~~L~~~ea~~ 357 (364)
.. -+|+|||+. +.+.+-.+...+. ..|..+|+|++. +++...+....++++++++.++-.+
T Consensus 87 --~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 87 --AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred --hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 01 278889994 3333333333332 346789998874 3344444566789999999999999
Q ss_pred HHhhcC
Q 036738 358 LFNMKA 363 (364)
Q Consensus 358 L~~~~a 363 (364)
++.+++
T Consensus 161 iL~~~~ 166 (226)
T PRK09087 161 VIFKLF 166 (226)
T ss_pred HHHHHH
Confidence 988653
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.6e-07 Score=89.02 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=93.2
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccccc---ceEEeeccccccccCCHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEG---SSFLANVREKSEREGGVI 260 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~ 260 (364)
|.....++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.+++.+...... .|..+. ...
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~---------sC~ 82 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT---------SCL 82 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc---------HHH
Confidence 4456778999999999999887642 23467999999999999999999976542110 011110 000
Q ss_pred HHHHHHHHHHhcCC---CCCccChhhhHHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCC-h
Q 036738 261 SFQRQLVSQLLKLT---DNRIWNEDDGINILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRD-E 333 (364)
Q Consensus 261 ~~~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~-~ 333 (364)
.+.......+.... .....+..++.+.+... ..++.-++|||+++ +...+..|+..+......+.+|++|.+ .
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 00000000000000 00011111122222211 24566799999997 456677777766544455565555544 3
Q ss_pred hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 ~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......|.+.+++.++..+.+.+
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~ 191 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEK 191 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHH
Confidence 33222 22345789999999888777654
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.65 E-value=2.3e-07 Score=94.48 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=88.4
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-----c-ccceEEeeccccccccC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-----F-EGSSFLANVREKSEREG 257 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f-~~~~~~~~~~~~~~~~~ 257 (364)
+...+.++||+.+++.+.+.|.... ..-+.++|++|+|||+||+.+++++... + ...+|..
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~---~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~---------- 244 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRK---KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL---------- 244 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCC---CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe----------
Confidence 3445679999999999999887642 3457899999999999999999986432 1 1223332
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc-CCCeEEEEEecCCCH-----------HHHHHHhccCCCCCCCcE
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL-QHKKVLLVIDDVIDS-----------KQLEYLAGKHGWYGSGSR 325 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~ 325 (364)
+...+... .. ...+.++.+..+.+.+ ..++.+|+||+++.. +..+.+.+.+. ...-+
T Consensus 245 ~~~~l~a~-------~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~ 313 (731)
T TIGR02639 245 DMGSLLAG-------TK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLR 313 (731)
T ss_pred cHHHHhhh-------cc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeE
Confidence 11111110 00 0111222222222222 346889999998632 22334545443 12234
Q ss_pred EEEEeCChhhhhh-------CCCCceeeCCCCCHhHHHHHHhh
Q 036738 326 IIITSRDEGLLKT-------NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 326 iliTtr~~~v~~~-------~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+|-+|...++... ....+.+++++++.++..+++..
T Consensus 314 ~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~ 356 (731)
T TIGR02639 314 CIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKG 356 (731)
T ss_pred EEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHH
Confidence 4444443221111 01234789999999999999874
No 47
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=1.9e-07 Score=92.16 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=95.5
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..+..|...+..+. -...+.++|+.|+||||+|+.+++.+...... ...++ +.....
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~---------~~~pC-g~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI---------TATPC-GECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC---------CCCCC-CCCHHH
Confidence 4556789999999999999887642 23456899999999999999999876542100 00001 111111
Q ss_pred HHHHHH-------HhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQ-------LLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+... +.........+..++.+.+... ..+++-++|||+++ +......|+..+......+++|++|.+.
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 111100 0000000011111112221111 24566799999997 4566777777665545566666655553
Q ss_pred -hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 -GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 -~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......+++.+|+.++..+.+.+
T Consensus 160 ~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 160 QKLPVTILSRCLQFHLKALDVEQIRQQLEH 189 (647)
T ss_pred cccchHHHhhheEeeCCCCCHHHHHHHHHH
Confidence 33322 22346889999999999887764
No 48
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.3e-06 Score=81.31 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=99.3
Q ss_pred cccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc--ccceEEeeccccccccCCHH
Q 036738 183 KPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF--EGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ 260 (364)
.|.....++|.+.....|.+.+..+ .-.....++|+.|+||+|+|..+++.+-.+- .......... ..... +..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~-~~c 89 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAID-PDH 89 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCC-CCC
Confidence 4556678999999999999888764 2345688999999999999999999864321 1110000000 00000 000
Q ss_pred HHHHHHHHHHhcCCC---------C------CccChhhhHHHHHHhc-----CCCeEEEEEecCC--CHHHHHHHhccCC
Q 036738 261 SFQRQLVSQLLKLTD---------N------RIWNEDDGINILGSRL-----QHKKVLLVIDDVI--DSKQLEYLAGKHG 318 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~---------~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~~~ 318 (364)
.....+... ..++ . ..-..++ +..+.+.+ .+++-++|||+++ +......|+..+.
T Consensus 90 ~~c~~i~~~--~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 90 PVARRIAAG--AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred hHHHHHHcc--CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 011111000 0000 0 0001122 12222222 3466799999996 5566677776665
Q ss_pred CCCCCcEEEEEeCChhhhh-h-CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 319 WYGSGSRIIITSRDEGLLK-T-NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 319 ~~~~gs~iliTtr~~~v~~-~-~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
....++.+|++|.+..-.. . ......+.+.+++.++..+++...
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh
Confidence 5456777888887764322 2 223568899999999999988753
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=6.6e-07 Score=86.00 Aligned_cols=164 Identities=17% Similarity=0.129 Sum_probs=88.9
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc---cceEEeeccccccccCCHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE---GSSFLANVREKSEREGGVI 260 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 260 (364)
|.....++|.+.....|...+..+ .-.+.+.++|++|+||||+|+.+++.+...-. .-|..+
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c------------- 74 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC------------- 74 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc-------------
Confidence 445677999998888888887653 23355789999999999999999987643100 000000
Q ss_pred HHHHHHHH-------HHhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEe
Q 036738 261 SFQRQLVS-------QLLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITS 330 (364)
Q Consensus 261 ~~~~~l~~-------~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTt 330 (364)
.....+.. .+.........+.....+..... ..+++-++|+|+++.. .....|+..+......+.+|++|
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 00000000 00000000000011111111111 2346679999999743 44556666554434455555555
Q ss_pred CChh-hhhh-CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 331 RDEG-LLKT-NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 331 r~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.++. +... ......+++.+++.++....+.+.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i 188 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEV 188 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHH
Confidence 4432 2221 123468899999999988777653
No 50
>PRK05642 DNA replication initiation factor; Validated
Probab=98.63 E-value=3.5e-07 Score=80.17 Aligned_cols=121 Identities=19% Similarity=0.266 Sum_probs=70.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR 291 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (364)
...+.|+|++|+|||.|++.+++.+...-..++|+. ...+... . ..+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-----------~~~~~~~---------------~----~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-----------LAELLDR---------------G----PELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-----------HHHHHhh---------------h----HHHHHh
Confidence 357899999999999999999987654433445554 1111110 0 112222
Q ss_pred cCCCeEEEEEecCCCH---HHHHH-HhccCCC-CCCCcEEEEEeCChh---------hhhhCCCCceeeCCCCCHhHHHH
Q 036738 292 LQHKKVLLVIDDVIDS---KQLEY-LAGKHGW-YGSGSRIIITSRDEG---------LLKTNRVDEVYKPNGLNYNEALQ 357 (364)
Q Consensus 292 l~~~~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iliTtr~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 357 (364)
+.+- -+||+||+... ..++. +...+.. ...|..+|+|++... +...+..+.++++++++.++-.+
T Consensus 95 ~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 95 LEQY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhhC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 2222 27889999522 23222 2222211 134668888886532 22222345678999999999999
Q ss_pred HHhhcC
Q 036738 358 LFNMKA 363 (364)
Q Consensus 358 L~~~~a 363 (364)
++.+++
T Consensus 174 il~~ka 179 (234)
T PRK05642 174 ALQLRA 179 (234)
T ss_pred HHHHHH
Confidence 988543
No 51
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=6.9e-07 Score=86.85 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=92.9
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc-----cc-eEEeeccccccccC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE-----GS-SFLANVREKSEREG 257 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~-~~~~~~~~~~~~~~ 257 (364)
|.....++|.+..+..|...+..+ ...+.+.++|+.|+||||+|+.+++.+..... |. |-.|...... .+.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~-~~~ 88 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN-SFI 88 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC-CCC
Confidence 445567899999999999888653 23455789999999999999999987643211 10 0000000000 000
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCCh-
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDE- 333 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~- 333 (364)
++..+ .........+..++.+.+... ..+++-++|+||++ +....+.|+..+......+.+|++|.+.
T Consensus 89 dliei--------daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ 160 (546)
T PRK14957 89 DLIEI--------DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160 (546)
T ss_pred ceEEe--------ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 00000 000000011111222222211 23466699999997 4456667776665544566666555443
Q ss_pred hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 ~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......+++.+++.++..+.+.+
T Consensus 161 kil~tI~SRc~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKI 189 (546)
T ss_pred hhhhhHHHheeeEEeCCCCHHHHHHHHHH
Confidence 33322 22356889999999988776654
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=9.9e-07 Score=82.82 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=90.3
Q ss_pred ccccccchhHHHHHHhhcCCCC-------CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 188 KKLVGIDSRLEELRFLMDKGPS-------ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
..++|.+..++.|...+..... .-.+-+.++|++|+|||++|+.++..+...... .- .. +..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~--------~C-g~C 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EP--------GC-GEC 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CC--------CC-CCC
Confidence 4678999999999998876420 135668899999999999999999876433210 00 00 000
Q ss_pred HHHHHHHHHHhcCCC-------CCccChhh---hHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEE
Q 036738 261 SFQRQLVSQLLKLTD-------NRIWNEDD---GINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRII 327 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~-------~~~~~~~~---~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~il 327 (364)
.....+... ..+. ......++ +.+.+... ..+++-++|||+++. ......|+..+.....++.+|
T Consensus 74 ~~C~~~~~~--~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 74 RACRTVLAG--THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred HHHHHHhcC--CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 000000000 0000 00001111 11111111 134556888899974 445556666565445677777
Q ss_pred EEeCChh-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 328 ITSRDEG-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 328 iTtr~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
++|.+.. +... ......+.+.+++.++..+.+.+
T Consensus 152 L~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 152 LCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred EEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH
Confidence 7776643 3322 12346889999999999888753
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.60 E-value=3.5e-07 Score=88.91 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=88.5
Q ss_pred ccccccccccchhHHHHHHhhcCCC-CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGP-SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
|.....++|.+..++.|..|+.... +...+.+.|+|++|+||||+|+.+++.+. |+. +.+. . ++ . .....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-a---sd-~-r~~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-A---SD-Q-RTADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-c---cc-c-ccHHH
Confidence 4455679999999999999886421 12367899999999999999999999873 221 1111 1 11 1 11222
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH------HHHHHHhccCCCCCCCcEEEEEeCChh-h
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS------KQLEYLAGKHGWYGSGSRIIITSRDEG-L 335 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~iliTtr~~~-v 335 (364)
+..++....... .....++-+||||+++.. ..+..+...+. ..++.||+|+.+.. .
T Consensus 81 i~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 81 IERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 233322221110 011135779999999753 22444444333 23445666664432 1
Q ss_pred hh--hCCCCceeeCCCCCHhHHHHHHhh
Q 036738 336 LK--TNRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 336 ~~--~~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.. .-.....+++++++.++....+.+
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~ 171 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKR 171 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHH
Confidence 11 112345789999999988877754
No 54
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=8.9e-07 Score=87.23 Aligned_cols=171 Identities=15% Similarity=0.164 Sum_probs=93.5
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|....+++|.+..+..|..++..+ .-...+.++|+.|+||||+|+.+++.+...-... .. +.....+ +.....
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~--~~--~~~~~pC-g~C~~C 84 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG--QG--GITATPC-GVCQAC 84 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc--cc--CCCCCCC-CccHHH
Confidence 445677899999999999988764 2345678999999999999999998764210000 00 0000001 111111
Q ss_pred HHHHHH----HhcCCCCCccChhhhHHHHHH---h-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCC-
Q 036738 264 RQLVSQ----LLKLTDNRIWNEDDGINILGS---R-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRD- 332 (364)
Q Consensus 264 ~~l~~~----l~~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~- 332 (364)
..+... +...........++..+.+.. . ..++.-++|||+++ +......++..+......+.+|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 111000 000000000111121111111 1 13455689999997 445677777666554556666666544
Q ss_pred hhhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 333 EGLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
..+... ......+++.+++.++..+.+.+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQ 194 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHH
Confidence 333322 22356889999999998877754
No 55
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.59 E-value=1.2e-06 Score=81.96 Aligned_cols=168 Identities=14% Similarity=0.140 Sum_probs=90.7
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc----cc-cceEEeeccccccccCC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE----FE-GSSFLANVREKSEREGG 258 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~-~~~~~~~~~~~~~~~~~ 258 (364)
|.....++|.+..++.|.+.+..+ .-.+.+.++|++|+||||+|+.++..+... +. +..+..+..-......+
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 445567899999999999988654 334578899999999999999999886432 10 00000000000000000
Q ss_pred HHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCChh-
Q 036738 259 VISFQRQLVSQLLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRDEG- 334 (364)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~~~- 334 (364)
+.. +.+.......+..++.+.+... ..+++-++|+|+++.. .....+...+......+.+|++|.+..
T Consensus 88 ~~~--------~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~ 159 (355)
T TIGR02397 88 VIE--------IDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHK 159 (355)
T ss_pred EEE--------eeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHH
Confidence 000 0000000000011111111111 1244558899998643 455666655544445667777775543
Q ss_pred hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 335 LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 335 v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+... ......+++++++.++..+.+..
T Consensus 160 l~~~l~sr~~~~~~~~~~~~~l~~~l~~ 187 (355)
T TIGR02397 160 IPATILSRCQRFDFKRIPLEDIVERLKK 187 (355)
T ss_pred HHHHHHhheeEEEcCCCCHHHHHHHHHH
Confidence 2221 12345788999999998887764
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.58 E-value=8.3e-07 Score=79.28 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=78.8
Q ss_pred cccccchhHHHHHHhhcC------------CCCCCceEEEEEccCccchHHHHHHHHHHhhcc--cccceEEeecccccc
Q 036738 189 KLVGIDSRLEELRFLMDK------------GPSADVRMIGICGMGGLGKTTLARVIYDLISHE--FEGSSFLANVREKSE 254 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~ 254 (364)
.++|.+...++|.+.... ........+.++|++|+||||+|+.+++.+... .....++. +
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~----- 80 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-V----- 80 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-e-----
Confidence 467777666655432110 111345678899999999999999999876422 11112221 0
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC----------HHHHHHHhccCCCCCCCc
Q 036738 255 REGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID----------SKQLEYLAGKHGWYGSGS 324 (364)
Q Consensus 255 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs 324 (364)
....+ .....+. ........+... . .-+|+||+++. .+.+..+...+.......
T Consensus 81 ---~~~~l----~~~~~g~------~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 81 ---ERADL----VGEYIGH------TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred ---cHHHh----hhhhccc------hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 01111 1111000 011111222221 1 24889999964 234555665554333344
Q ss_pred EEEEEeCChhh----------hhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 325 RIIITSRDEGL----------LKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 325 ~iliTtr~~~v----------~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.+++++..... ... ....+++++++.+|-.+++.+.
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~ 190 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHH
Confidence 55555443221 111 2346899999999999988754
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.9e-06 Score=79.10 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=93.9
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-----cccceEEeeccccccccCCHHHH
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-----FEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
..++|.+...+.+...+..+ .-.+...++|+.|+||||+|+.+++.+... ++....+... ....-... -
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~i~v~-~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKSIGVD-D 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCCCCHH-H
Confidence 45789888889999888654 345577899999999999999999976332 2222112100 00000111 1
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh--
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT-- 338 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~-- 338 (364)
.+.+...+... -..+++-++|+|+++ +......++..+....+++.+|++|.+.+....
T Consensus 78 ir~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 22222221110 012345567777764 566788888877766778899988877643311
Q ss_pred CCCCceeeCCCCCHhHHHHHHhh
Q 036738 339 NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 339 ~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
......+++.+++.++....+.+
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHH
Confidence 22356889999999998877754
No 58
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=2.1e-07 Score=91.67 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=89.9
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..+..|..++..+ .-.+.+.++|+.|+||||+|+.+++.+...-... .... ......
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---------~~pC-g~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---------GEPC-GVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---------CCCC-cccHHH
Confidence 445677999999999999998763 2345689999999999999999998764321000 0000 000000
Q ss_pred HHHHHH-------HhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQ-------LLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+... +.........+..+++...... ..+++-++|||+++.. .....|+..+......+++|++|.+.
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 000000 0000000011111111111111 1345668999999744 34555555554334566777776553
Q ss_pred h-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 G-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 ~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
. +... .+....+.+.+++.++....+.+
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~ 189 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAH 189 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHH
Confidence 2 2211 12234678889999888777753
No 59
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.58 E-value=6e-07 Score=77.78 Aligned_cols=130 Identities=24% Similarity=0.278 Sum_probs=76.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhccccc--ceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEG--SSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINI 287 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 287 (364)
.....+.|+|+.|+|||.|++++++.+...++. ++|+. ...+...+...+... ....
T Consensus 32 ~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~~----------~~~~ 90 (219)
T PF00308_consen 32 ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRDG----------EIEE 90 (219)
T ss_dssp TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHTT----------SHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHcc----------cchh
Confidence 334568999999999999999999987665443 23332 334444454444221 1233
Q ss_pred HHHhcCCCeEEEEEecCCCH---HHHH-H---HhccCCCCCCCcEEEEEeCCh-h--------hhhhCCCCceeeCCCCC
Q 036738 288 LGSRLQHKKVLLVIDDVIDS---KQLE-Y---LAGKHGWYGSGSRIIITSRDE-G--------LLKTNRVDEVYKPNGLN 351 (364)
Q Consensus 288 l~~~l~~~~~LlVlDdv~~~---~~~~-~---l~~~~~~~~~gs~iliTtr~~-~--------v~~~~~~~~~~~l~~L~ 351 (364)
+...+++ --+|+|||++.. ..++ . +...+. ..|.++|+|++.. . +...+..+-+++|++++
T Consensus 91 ~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 91 FKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp HHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred hhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 4455553 447899999632 2222 1 222222 3466899999553 2 22223345689999999
Q ss_pred HhHHHHHHhhcC
Q 036738 352 YNEALQLFNMKA 363 (364)
Q Consensus 352 ~~ea~~L~~~~a 363 (364)
.++..+++.++|
T Consensus 168 ~~~r~~il~~~a 179 (219)
T PF00308_consen 168 DEDRRRILQKKA 179 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 60
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.58 E-value=4.1e-07 Score=93.61 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=87.5
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc------ccceEEeeccccccccC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF------EGSSFLANVREKSEREG 257 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~ 257 (364)
+...+.++||+.++..+.+.|.... ...+.|+|++|+||||||+.+++++.... ...+|...++.....
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~---~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag-- 257 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRR---QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG-- 257 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCC---cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc--
Confidence 4455689999999999999887632 34567999999999999999999875431 112222211110000
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhh-hHHHHHHhc-CCCeEEEEEecCCCHH-------H---HHHHhccCCCCCCCcE
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDD-GINILGSRL-QHKKVLLVIDDVIDSK-------Q---LEYLAGKHGWYGSGSR 325 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~l~~~l-~~~~~LlVlDdv~~~~-------~---~~~l~~~~~~~~~gs~ 325 (364)
. ....+.+. +...+.+.. .+++.+|++|+++... + -..+.+.+. .+.-+
T Consensus 258 ----------------~-~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~ 318 (852)
T TIGR03345 258 ----------------A-SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELR 318 (852)
T ss_pred ----------------c-ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeE
Confidence 0 00011111 112222221 2468999999986431 1 123444443 22345
Q ss_pred EEEEeCChhhhhhC-------CCCceeeCCCCCHhHHHHHHh
Q 036738 326 IIITSRDEGLLKTN-------RVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 326 iliTtr~~~v~~~~-------~~~~~~~l~~L~~~ea~~L~~ 360 (364)
+|-+|...++.... ....++.+++++.++..++|.
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLR 360 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHH
Confidence 55555543221111 123588999999999999964
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1.9e-06 Score=83.20 Aligned_cols=164 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc-------cceEEeecccccccc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE-------GSSFLANVREKSERE 256 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~~~~~~~~~~ 256 (364)
|.....++|.+..+..|...+..+ .-.+.+.++|++|+||||+|+.+++.+..... ..|..|
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C--------- 85 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC--------- 85 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC---------
Confidence 445567899999999998876553 33457899999999999999999997643210 001111
Q ss_pred CCHHHHHHHHHHH-------HhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEE
Q 036738 257 GGVISFQRQLVSQ-------LLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRI 326 (364)
Q Consensus 257 ~~~~~~~~~l~~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~i 326 (364)
.....+... +.........+..+..+..... ..+++-++|||+++. ...+..|+..+....+.+.+
T Consensus 86 ----~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 86 ----TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred ----hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEE
Confidence 000000000 0000000111111111111111 234667899999975 45566666655544456666
Q ss_pred EE-EeCChhhhhhC-CCCceeeCCCCCHhHHHHHHhhc
Q 036738 327 II-TSRDEGLLKTN-RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 327 li-Ttr~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
|+ ||+...+.... .....+++.+++.+|....+.+.
T Consensus 162 I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 162 IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHH
Confidence 55 44444443322 23457899999999998888643
No 62
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.53 E-value=1.7e-06 Score=81.58 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=86.9
Q ss_pred cccccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 187 LKKLVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
...+.|++.++++|.+.+... .-..++-+.|+|++|+|||+||+.+++..... |+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~v-------- 196 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIRV-------- 196 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEEe--------
Confidence 456789999999988765320 01345668999999999999999999986543 2220
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH-------------HH---HHHHhccCCCC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS-------------KQ---LEYLAGKHGWY 320 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~---~~~l~~~~~~~ 320 (364)
....+. ....+. ........+...-...+.+|+|||++.. .. +..++..+...
T Consensus 197 -~~~~l~----~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 197 -VGSELV----QKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred -ehHHHh----Hhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 001111 110000 0011111122222456789999999743 11 22233222211
Q ss_pred --CCCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 --GSGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 --~~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..||.||...+.... ...+..+++++.+.++..++|..+
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~ 314 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIH 314 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHH
Confidence 235567777765433222 123567899999999999999764
No 63
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=9.5e-07 Score=81.77 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=97.6
Q ss_pred cccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc----cccceEEeeccccccccCC
Q 036738 183 KPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE----FEGSSFLANVREKSEREGG 258 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~ 258 (364)
.|.....++|.+.....+...+..+ .....+.|+|+.|+||||+|..+++.+-.. +..... .... .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-------~~~~-~ 87 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-------ADPD-P 87 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-------CCCC-C
Confidence 4566778999999999999988764 334568999999999999999999986542 111000 0000 0
Q ss_pred HHHHHHHHHHH-------HhcCC-C-----CCccChhhhHHHHHHhc-----CCCeEEEEEecCC--CHHHHHHHhccCC
Q 036738 259 VISFQRQLVSQ-------LLKLT-D-----NRIWNEDDGINILGSRL-----QHKKVLLVIDDVI--DSKQLEYLAGKHG 318 (364)
Q Consensus 259 ~~~~~~~l~~~-------l~~~~-~-----~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~~~ 318 (364)
.......+... +.... . ...-..++. ..+.+.+ .+++-++|||+++ +......++..+.
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 11111111111 00000 0 000112222 1233332 3466799999997 4455666666665
Q ss_pred CCCCCcEEEEEeCChh-hhhhC-CCCceeeCCCCCHhHHHHHHhh
Q 036738 319 WYGSGSRIIITSRDEG-LLKTN-RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 319 ~~~~gs~iliTtr~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
....++.+|++|.++. +.... .....+.+.+++.++..+++.+
T Consensus 167 Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSH 211 (351)
T ss_pred cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 4445666666665543 32221 2345899999999999998865
No 64
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=8.1e-07 Score=85.16 Aligned_cols=166 Identities=17% Similarity=0.140 Sum_probs=92.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+...+... ..+. +.....
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---------~~pC-g~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPT---------SDPC-GTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCC---------CCCc-cccHHH
Confidence 445677899999999998887653 2344789999999999999999998653221100 0000 000011
Q ss_pred HHHHHHHhc----CCCCCccChhhh---HHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCC-
Q 036738 264 RQLVSQLLK----LTDNRIWNEDDG---INILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRD- 332 (364)
Q Consensus 264 ~~l~~~l~~----~~~~~~~~~~~~---~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~- 332 (364)
..+...... .........++. .+..... ..+++-++|+|+++ +....+.|+..+....+.+.+|++|.+
T Consensus 77 ~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred HHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 111000000 000000111111 1111111 13456689999996 345566676666555567777766644
Q ss_pred hhhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 333 EGLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+.+... ......+++.+++.++..+.+.+
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ 186 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVD 186 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHH
Confidence 333322 22346789999999888777764
No 65
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.3e-06 Score=84.87 Aligned_cols=164 Identities=15% Similarity=0.122 Sum_probs=89.6
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..+..|..++..+ .-.....++|+.|+||||+|+.+++.+...-... ..++ +.....
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pC-g~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS---------ANPC-NDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------cccC-CCCHHH
Confidence 445677899999999999999764 2344578999999999999999998764321000 0000 000000
Q ss_pred HHHHHHH----hcCCCCCccChhhh---HHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQL----LKLTDNRIWNEDDG---INILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~l----~~~~~~~~~~~~~~---~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+...- ...........++. .+.+... ..++.-++|||+++. ......++..+......+++|++|.+.
T Consensus 80 ~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 80 REIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred HHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 0000000 00000000111111 1111111 134566899999974 456666666665545667777765543
Q ss_pred -hhhhh-CCCCceeeCCCCCHhHHHHHH
Q 036738 334 -GLLKT-NRVDEVYKPNGLNYNEALQLF 359 (364)
Q Consensus 334 -~v~~~-~~~~~~~~l~~L~~~ea~~L~ 359 (364)
.+... ......+++.+++.++....+
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~l 187 (509)
T PRK14958 160 HKLPVTVLSRCLQFHLAQLPPLQIAAHC 187 (509)
T ss_pred HhchHHHHHHhhhhhcCCCCHHHHHHHH
Confidence 32222 122456789999988766554
No 66
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.51 E-value=5.8e-06 Score=70.00 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=45.6
Q ss_pred CCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCh-hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 294 HKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDE-GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 294 ~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+.+-++|+||++. ....+.++..+......+.+|++|.+. .+... ......+++.+++.++..+.+.+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHH
Confidence 4566899999964 345666666665545567777777654 22221 12346899999999998888765
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=7.5e-07 Score=86.87 Aligned_cols=166 Identities=15% Similarity=0.083 Sum_probs=90.3
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|++..+..+...+..+ ...+.+.++|+.|+||||+|+.+++.+...- |.. ...+ +.....
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-----~~~C-g~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-----GDCC-NSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-----CCCC-cccHHH
Confidence 455678899999999999988653 2345788999999999999999999874321 100 0000 000111
Q ss_pred HHHHHHH-------hcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQL-------LKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+.... .........+.......+... ...++-++|+|+++. ......|+..+......+.+|++|.+.
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 1110000 000000001111111111111 122344699999964 455566666554434556666555443
Q ss_pred -hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 -GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 -~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......+++.+++.++....+..
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKS 189 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHH
Confidence 33222 22346789999999988877654
No 68
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=1.1e-06 Score=89.59 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=93.3
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc-----ccceEEeeccccccccCC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF-----EGSSFLANVREKSEREGG 258 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~ 258 (364)
|.....++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+++.+.... .|...
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C------------- 75 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC------------- 75 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc-------------
Confidence 445567899999999999998764 2335678999999999999999998875321 11110
Q ss_pred HHHHHHHHHHH------HhcCCCCCccChhhhHH---HHH-HhcCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEE
Q 036738 259 VISFQRQLVSQ------LLKLTDNRIWNEDDGIN---ILG-SRLQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRI 326 (364)
Q Consensus 259 ~~~~~~~l~~~------l~~~~~~~~~~~~~~~~---~l~-~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~i 326 (364)
.....+... +...........++..+ .+. .-..+++-++|||+++ +....+.|+..+......+.+
T Consensus 76 --~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 76 --DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred --HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 000000000 00000000001111111 111 1123556688999997 445666777666655567676
Q ss_pred EEEeCCh-hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 327 IITSRDE-GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 327 liTtr~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
|++|.+. .+... ......|++.+++.++..+++.+
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~ 190 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLER 190 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHH
Confidence 6666443 34332 22456889999999888777754
No 69
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.47 E-value=1.8e-06 Score=79.48 Aligned_cols=149 Identities=18% Similarity=0.221 Sum_probs=85.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+...+.+..++..+ .....+.++|++|+|||++|+.+++.....+ ..+. . .. . . ....
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~~-~-~-~~~i 84 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---SD-C-R-IDFV 84 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---Cc-c-c-HHHH
Confidence 455678899999999999988753 3456777799999999999999998764321 2222 1 11 1 1 1111
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH---HHHHHHhccCCCCCCCcEEEEEeCChhhhhh--
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS---KQLEYLAGKHGWYGSGSRIIITSRDEGLLKT-- 338 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~-- 338 (364)
+..+....... .+...+-+|||||++.. .....+...+.....++++|+||........
T Consensus 85 ~~~l~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 85 RNRLTRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred HHHHHHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH
Confidence 11111110000 01134558899999643 2223333323333467788888865431111
Q ss_pred CCCCceeeCCCCCHhHHHHHHh
Q 036738 339 NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 339 ~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
......+.++..+.++..+++.
T Consensus 149 ~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 149 RSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred HhhceEEEeCCCCHHHHHHHHH
Confidence 1123467777788887765543
No 70
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.47 E-value=1.2e-06 Score=90.31 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=87.1
Q ss_pred cccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-c-----ccceEEeeccccccccCCHH
Q 036738 187 LKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-F-----EGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~ 260 (364)
.+..+||+.+++.+.+.|.... ...+.++|++|+|||+||+.++.++... . ...+|.. +..
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~---~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l----------~~~ 244 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT---KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL----------DIG 244 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc---cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe----------eHH
Confidence 3568999999999999997643 3356799999999999999999986431 1 1233332 111
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhH-HHHHHhcCCCeEEEEEecCCCH----------HHHHHHhccCCCCCCCcEEEEE
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGI-NILGSRLQHKKVLLVIDDVIDS----------KQLEYLAGKHGWYGSGSRIIIT 329 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iliT 329 (364)
.++. +.. ...+.++.+ ..+.+....++.+|+||+++.. .....|.+.+. .+.-++|.+
T Consensus 245 ~l~a-------g~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~Iga 313 (821)
T CHL00095 245 LLLA-------GTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGA 313 (821)
T ss_pred HHhc-------cCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEe
Confidence 1110 111 011222222 2233333457899999999532 12233444433 223455555
Q ss_pred eCChhhhhh-------CCCCceeeCCCCCHhHHHHHHh
Q 036738 330 SRDEGLLKT-------NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 330 tr~~~v~~~-------~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
|....+... ......+.++..+.++..+++.
T Consensus 314 Tt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr 351 (821)
T CHL00095 314 TTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILF 351 (821)
T ss_pred CCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHH
Confidence 555443221 1123467889999999888875
No 71
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.8e-06 Score=84.36 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=89.3
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..+..|..++... .-.+.+.++|++|+||||+|+.+++.+....... ..+. +.....
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pc-g~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---------ATPC-GVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCC-CCCHHH
Confidence 445567899999999999988763 2334568999999999999999998764321000 0000 000000
Q ss_pred HHHHHH----HhcCCCCCccChhhhH---HHHHHh-cCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQ----LLKLTDNRIWNEDDGI---NILGSR-LQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~----l~~~~~~~~~~~~~~~---~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+... +...........++.. ...... ..+++-++|+|+++.. .....++..+......+.+|++|.++
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 000000 0000000000111111 111111 1356679999999744 44666666665444566666655443
Q ss_pred -hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 -GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 -~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......+++.+++.++....+.+
T Consensus 160 ~kil~tI~SRc~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 160 QKIPVTVLSRCLQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred hhCchhHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 33211 11235778899988887766543
No 72
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.46 E-value=1.3e-06 Score=76.33 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=73.8
Q ss_pred cccccc-ccch-hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 186 ILKKLV-GIDS-RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 186 ~~~~~~-Gr~~-~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
..++|+ |... .+..+.++.... .....+.|+|++|+|||+||+.+++.....-....++.. ....
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~~~--~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-----------~~~~ 82 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAAGP--VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-----------ASPL 82 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-----------HHhH
Confidence 345555 4433 344555554422 344678999999999999999999876433223333331 1110
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--HHHHHHhccCCCC-CCCc-EEEEEeCChhhhh--
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--KQLEYLAGKHGWY-GSGS-RIIITSRDEGLLK-- 337 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~iliTtr~~~v~~-- 337 (364)
..+ ... ...-+||+||++.. .....+...+... ..+. .+|+|++......
T Consensus 83 ~~~-----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 83 LAF-----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred HHH-----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 000 011 12347899999632 2222232222111 1333 3666665432111
Q ss_pred ------hCCCCceeeCCCCCHhHHHHHHhh
Q 036738 338 ------TNRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 338 ------~~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+.....++++++++++-..++.+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 222246889999999887766654
No 73
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.45 E-value=2.1e-06 Score=88.60 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=42.6
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+...+.++||+.++..+.+.|.... ...+.++|++|+|||+||+.++.++..
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRT---KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCC---cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 3445679999999999999887643 345679999999999999999998643
No 74
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=9.2e-07 Score=83.76 Aligned_cols=171 Identities=16% Similarity=0.141 Sum_probs=91.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc--cccceEEeeccccccccCCHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE--FEGSSFLANVREKSEREGGVIS 261 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 261 (364)
|.....++|.+...+.|..++..+ .-...+.++|++|+||||+|+.+++.+... +....|.... ..+. +...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c-~~c~ 85 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPC-GECE 85 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCC-CCCH
Confidence 445677899999999999988763 233458899999999999999999987432 1000000000 0000 0000
Q ss_pred HHHHHHHHHhc----CCCCCccChhhhHHHHHHhc-----CCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEe
Q 036738 262 FQRQLVSQLLK----LTDNRIWNEDDGINILGSRL-----QHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITS 330 (364)
Q Consensus 262 ~~~~l~~~l~~----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTt 330 (364)
....+...... .........++..+ +.+.+ .+.+-++|+||++. ...++.+...+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 11111100000 00000011122222 11222 24556889999974 345666666555445566666655
Q ss_pred CC-hhhhhhC-CCCceeeCCCCCHhHHHHHHhh
Q 036738 331 RD-EGLLKTN-RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 331 r~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+ ..+.... .....+++.+++.++..+.+..
T Consensus 165 ~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~ 197 (397)
T PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQG 197 (397)
T ss_pred CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 33 3333221 1235788999999888776654
No 75
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=6.3e-06 Score=77.46 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=88.3
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc--------cccceEEeeccccccc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE--------FEGSSFLANVREKSER 255 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~ 255 (364)
|.....++|.+...+.+...+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++-. .. ...
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccC
Confidence 445677899999999999988763 334578899999999999999999876542 11111100 00 000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCC-
Q 036738 256 EGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRD- 332 (364)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~- 332 (364)
. .. .....+...+... -..+++-++++|+++. ...+..+...+......+.+|+++.+
T Consensus 88 ~-~~-~~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 88 N-SV-DDIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred C-CH-HHHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 0 01 1111222211000 0123455899999964 34456665544433345566665533
Q ss_pred hhhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 333 EGLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
..+... ......+++++++.++....+..
T Consensus 149 ~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 149 HKIIPTILSRCQIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred ccCCHHHHhcceeEecCCccHHHHHHHHHH
Confidence 222221 22345789999999888777754
No 76
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1.5e-06 Score=85.64 Aligned_cols=171 Identities=14% Similarity=0.143 Sum_probs=93.8
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.......- .+.....+ +.....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~c-g~c~~C 92 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDLC-GVGEHC 92 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCccccC-cccHHH
Confidence 445678899999999999988764 33456889999999999999999998654321000 00000000 111111
Q ss_pred HHHHHHHhc-------CCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeC-C
Q 036738 264 RQLVSQLLK-------LTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSR-D 332 (364)
Q Consensus 264 ~~l~~~l~~-------~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr-~ 332 (364)
..+...... .......+..++.+.+... ...++-++|+|+++. ....+.|+..+.....++.+|++|. .
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 111110000 0000111111222222111 123455789999964 3456666665554456677766553 3
Q ss_pred hhhhhhC-CCCceeeCCCCCHhHHHHHHhh
Q 036738 333 EGLLKTN-RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
..+.... .....+++.+++.++....+.+
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~ 202 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSR 202 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHH
Confidence 3333222 2346789999999988877765
No 77
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.42 E-value=3.9e-06 Score=80.84 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=86.7
Q ss_pred cccccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcccc-----cceEEeeccc
Q 036738 187 LKKLVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFE-----GSSFLANVRE 251 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~ 251 (364)
...+.|.+..+++|.+.+... .-..++-+.|+|++|+|||++|+.+++.+...+. ...|+. +..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc
Confidence 345678888888887764310 1134556899999999999999999998765421 223332 110
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCCHH--------------HHHHHhcc
Q 036738 252 KSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVIDSK--------------QLEYLAGK 316 (364)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--------------~~~~l~~~ 316 (364)
. .++....+. ............+.. ..+++++|+||+++... .+..++..
T Consensus 260 ----~--------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 260 ----P--------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ----h--------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 0 000000000 000001111112221 23578999999996421 12334333
Q ss_pred CCCCC--CCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 317 HGWYG--SGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 317 ~~~~~--~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+.... .+..||.||-..+.++. ...+..+++++.+.++..++|..+
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHH
Confidence 33222 23344555544433221 123557899999999999999765
No 78
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.42 E-value=2.8e-06 Score=67.17 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEccCccchHHHHHHHHHHhh
Q 036738 215 IGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 79
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.41 E-value=2.4e-06 Score=88.53 Aligned_cols=154 Identities=11% Similarity=0.072 Sum_probs=87.0
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc------ccceEEeeccccccccC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF------EGSSFLANVREKSEREG 257 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~ 257 (364)
+...+.++||+.++..+...|.... ...+.++|++|+|||+|++.+++++...+ ...+|..
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l---------- 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL---------- 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe----------
Confidence 3344679999999999999987642 34567899999999999999999864421 1222222
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhH-HHHHHhc-CCCeEEEEEecCCCHH----------HHHHHhccCCCCCCCcE
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGI-NILGSRL-QHKKVLLVIDDVIDSK----------QLEYLAGKHGWYGSGSR 325 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~l~~~l-~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~ 325 (364)
++..++. +. . ...+.+... ..+.+.. .+++.+|+||+++... ..+.+.+.+. ...-+
T Consensus 236 ~~~~l~a-------~~-~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~ 304 (852)
T TIGR03346 236 DMGALIA-------GA-K-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELH 304 (852)
T ss_pred eHHHHhh-------cc-h-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceE
Confidence 1111110 00 0 001122222 2222222 2468999999996432 2333444332 22334
Q ss_pred EEEEeCChhhhhhC-------CCCceeeCCCCCHhHHHHHHhh
Q 036738 326 IIITSRDEGLLKTN-------RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 326 iliTtr~~~v~~~~-------~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+|-+|....+.... .....+.++..+.++..+++..
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~ 347 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRG 347 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHH
Confidence 45444444331110 1234678999999999998864
No 80
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.1e-06 Score=81.64 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=93.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..+..|..++..+ .-.+.+.++|+.|+||||+|+.++..+....... ..+. +.....
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pC-g~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---------ATPC-GVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---------CCcc-cccHHH
Confidence 445677899999999999998764 3345578999999999999999998765321000 0000 000000
Q ss_pred HHHHHH---------HhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeC
Q 036738 264 RQLVSQ---------LLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSR 331 (364)
Q Consensus 264 ~~l~~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr 331 (364)
..+... +.........+..++.+.+... ..+++-++|||+++ +....+.|+..+......+.+|++|.
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 011000 0000000011111111112111 13455588999997 44566677766665555666666554
Q ss_pred C-hhhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 332 D-EGLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 332 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+ ..+... ......+++.+++.++..+.+.+
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~ 188 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIAR 188 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHH
Confidence 3 433322 22356889999999988777754
No 81
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=2.6e-06 Score=84.18 Aligned_cols=172 Identities=14% Similarity=0.126 Sum_probs=92.2
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc--cccceEEeeccccccccCCHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE--FEGSSFLANVREKSEREGGVIS 261 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 261 (364)
|.....++|.+..+..|...+..+ .-...+.++|+.|+||||+|+.+++.+... ...-.|.... .... +...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~---~~~C-g~C~ 85 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV---TEPC-GECE 85 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc---CCCC-ccCH
Confidence 455678999999999999988653 234458899999999999999999886432 1000111000 0000 0111
Q ss_pred HHHHHHHHHhc----CCCCCccChhhhHHHHHHh----cCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeC
Q 036738 262 FQRQLVSQLLK----LTDNRIWNEDDGINILGSR----LQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSR 331 (364)
Q Consensus 262 ~~~~l~~~l~~----~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr 331 (364)
....+...... .........++....+... ..+.+-++|+||++.. ...+.|+..+......+.+|++|.
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 11111000000 0000011122222222111 1234557899999643 456666666654445566655554
Q ss_pred C-hhhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 332 D-EGLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 332 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+ ..+... ......+++.+++.++....+.+
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~ 197 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQM 197 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHH
Confidence 3 333322 23456889999999888766654
No 82
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=2e-06 Score=84.30 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=91.0
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..+..|...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... ...+ +.....
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pC-g~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPC-NTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCC-cccHHH
Confidence 445567899998888888888653 2346788999999999999999998764321000 0000 000000
Q ss_pred HHHHHHH-------hcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCC-
Q 036738 264 RQLVSQL-------LKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRD- 332 (364)
Q Consensus 264 ~~l~~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~- 332 (364)
..+.... .........+...+...+... ..+++-++|||+++. ......|+..+........+|++|.+
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 1110000 000000000111111111111 134566899999964 45566666665443455666666555
Q ss_pred hhhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 333 EGLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
..+... ......+++.+++.++....|..
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~ 189 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTK 189 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHH
Confidence 333322 22345789999999998877754
No 83
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.39 E-value=2.5e-06 Score=86.37 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=85.4
Q ss_pred cccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-c-----ccceEEeeccccccccCCHH
Q 036738 187 LKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-F-----EGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~ 260 (364)
.+.++||+.++..+.+.|.... ...+.|+|++|+|||+||+.+++++... . .+..|.. +..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~---~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----------~~~ 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----------DIG 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----------cHH
Confidence 3569999999999999887742 2345789999999999999999875332 1 1222221 111
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhc-CCCeEEEEEecCCCH----------HHH-HHHhccCCCCCCCcEEEE
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRL-QHKKVLLVIDDVIDS----------KQL-EYLAGKHGWYGSGSRIII 328 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~-~~l~~~~~~~~~gs~ili 328 (364)
.++ .+.. -..+.+.....+...+ ..++.+|+||+++.. .+. ..+.+.+. ...-++|-
T Consensus 252 ~ll-------aG~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIg 320 (758)
T PRK11034 252 SLL-------AGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIG 320 (758)
T ss_pred HHh-------cccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEe
Confidence 111 0000 0112222222222222 456789999999632 122 22444332 22334444
Q ss_pred EeCChhhhhh-------CCCCceeeCCCCCHhHHHHHHhh
Q 036738 329 TSRDEGLLKT-------NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 329 Ttr~~~v~~~-------~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+|..+++... ...-+.+.+++++.+++.++|..
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~ 360 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING 360 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence 4443332111 01235789999999999999874
No 84
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=4.7e-06 Score=79.95 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=76.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhccccc--ceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEG--SSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
...+.|+|+.|+|||+|++.+++.+....+. ++|+. ...+...+...+.... .....+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~--------~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH--------KEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh--------hHHHHHH
Confidence 3468999999999999999999976543222 23332 3344455554442210 1122333
Q ss_pred HhcCCCeEEEEEecCCCH----HHHHHHhccCCC-CCCCcEEEEEeCCh-h--------hhhhCCCCceeeCCCCCHhHH
Q 036738 290 SRLQHKKVLLVIDDVIDS----KQLEYLAGKHGW-YGSGSRIIITSRDE-G--------LLKTNRVDEVYKPNGLNYNEA 355 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~iliTtr~~-~--------v~~~~~~~~~~~l~~L~~~ea 355 (364)
+.+. +.-+|||||+... ...+.+...+.. ...+..||+|+... . +...+..+-++.+++++.++.
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 3333 3448899999532 222223222211 13455788887543 2 222233455788999999999
Q ss_pred HHHHhhcC
Q 036738 356 LQLFNMKA 363 (364)
Q Consensus 356 ~~L~~~~a 363 (364)
.+++.+++
T Consensus 281 ~~iL~~~~ 288 (450)
T PRK14087 281 TAIIKKEI 288 (450)
T ss_pred HHHHHHHH
Confidence 99997653
No 85
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.37 E-value=8.2e-07 Score=70.36 Aligned_cols=90 Identities=21% Similarity=0.361 Sum_probs=48.6
Q ss_pred ccEEEccccccCcccHHHHHHHHHHcC-------CCeE-Ee---------eCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 036738 14 YDVFLSFRGADTRKNFISHLYAALNGK-------GIYV-FK---------DDEELEKGESISPRLLKAIEASRIAIIVFS 76 (364)
Q Consensus 14 ~dvfiSy~~~D~~~~~~~~l~~~L~~~-------g~~~-~~---------d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S 76 (364)
|+|||||++.|. ...++.|...+... .+.. |. +..+......+...|.+.|..|+++|+++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 679999999883 23788788777773 2221 11 111222334788999999999999999999
Q ss_pred cccccCcccHHHHHHHHHhhhcCCCeeEEeEEe
Q 036738 77 KNYASSTWCLDELVHILDCKNKNAQRMVYPIFY 109 (364)
Q Consensus 77 ~~~~~s~~~~~El~~~~~~~~~~~~~~viPv~~ 109 (364)
++-..|.|+..|+..++.... . |+.|..
T Consensus 80 ~~T~~s~wV~~EI~~A~~~~~----~-Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKKGK----P-IIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTTT--------EEEEET
T ss_pred CCcccCcHHHHHHHHHHHCCC----C-EEEEEC
Confidence 999999999999998877433 2 777754
No 86
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.36 E-value=1.3e-05 Score=79.85 Aligned_cols=50 Identities=26% Similarity=0.376 Sum_probs=40.5
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
|...+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~---~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS---PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45556789999999988877654 334579999999999999999998765
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.36 E-value=5.4e-06 Score=74.77 Aligned_cols=128 Identities=18% Similarity=0.137 Sum_probs=69.8
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcc--cccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHE--FEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
..+.++|++|+|||++|+.+++.+... .....|+.. +.. .+...+.+.. .......+.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v---------~~~----~l~~~~~g~~------~~~~~~~~~~ 119 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV---------TRD----DLVGQYIGHT------APKTKEILKR 119 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe---------cHH----HHhHhhcccc------hHHHHHHHHH
Confidence 358999999999999999998875432 111223321 111 1222222211 1111122222
Q ss_pred hcCCCeEEEEEecCCCH-----------HHHHHHhccCCCCCCCcEEEEEeCChhhhhhC--------CCCceeeCCCCC
Q 036738 291 RLQHKKVLLVIDDVIDS-----------KQLEYLAGKHGWYGSGSRIIITSRDEGLLKTN--------RVDEVYKPNGLN 351 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~--------~~~~~~~l~~L~ 351 (364)
. ..-+|+||+++.. +....+...+.....+.+||.++......... .....+++++++
T Consensus 120 a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~ 196 (284)
T TIGR02880 120 A---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYS 196 (284)
T ss_pred c---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcC
Confidence 2 2358999999622 23344555444334456666666433221111 124578999999
Q ss_pred HhHHHHHHhhc
Q 036738 352 YNEALQLFNMK 362 (364)
Q Consensus 352 ~~ea~~L~~~~ 362 (364)
.+|-.+|+..+
T Consensus 197 ~edl~~I~~~~ 207 (284)
T TIGR02880 197 EAELLVIAGLM 207 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 88
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.35 E-value=3.9e-06 Score=80.36 Aligned_cols=129 Identities=21% Similarity=0.184 Sum_probs=75.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhccccc--ceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEG--SSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
...+.|+|++|+|||+|+..+++.+...++. +.|+. ...++..+...+... .. ..+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~------~~----~~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG------KL----NEFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc------cH----HHHH
Confidence 3458999999999999999999987665433 23332 233444444443211 11 1233
Q ss_pred HhcCCCeEEEEEecCCCH---H----HHHHHhccCCCCCCCcEEEEEeC-Chhh--------hhhCCCCceeeCCCCCHh
Q 036738 290 SRLQHKKVLLVIDDVIDS---K----QLEYLAGKHGWYGSGSRIIITSR-DEGL--------LKTNRVDEVYKPNGLNYN 353 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~---~----~~~~l~~~~~~~~~gs~iliTtr-~~~v--------~~~~~~~~~~~l~~L~~~ 353 (364)
+.+..+.-+|+|||+... . .+-.+...+. ..+..+|+||. .+.- ...+..+-++.+++.+.+
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 333345568999999632 1 1211222121 23457888874 4322 122334557899999999
Q ss_pred HHHHHHhhcC
Q 036738 354 EALQLFNMKA 363 (364)
Q Consensus 354 ea~~L~~~~a 363 (364)
.-.+++.+.+
T Consensus 267 ~r~~IL~~~~ 276 (440)
T PRK14088 267 TRKKIARKML 276 (440)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 89
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.35 E-value=5.1e-06 Score=79.48 Aligned_cols=129 Identities=18% Similarity=0.111 Sum_probs=74.5
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL 292 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (364)
..+.|+|++|+|||+|++.+++.+......+.|+. ...+...+...+... ....++..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~----------~~~~f~~~~ 200 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG----------EMQRFRQFY 200 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc----------hHHHHHHHc
Confidence 46889999999999999999998765433334443 222333443333211 112234333
Q ss_pred CCCeEEEEEecCCCH----HHHHHHhccCCC-CCCCcEEEEEeCC-hh--------hhhhCCCCceeeCCCCCHhHHHHH
Q 036738 293 QHKKVLLVIDDVIDS----KQLEYLAGKHGW-YGSGSRIIITSRD-EG--------LLKTNRVDEVYKPNGLNYNEALQL 358 (364)
Q Consensus 293 ~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~iliTtr~-~~--------v~~~~~~~~~~~l~~L~~~ea~~L 358 (364)
. +.-+|+|||+... ...+.+...+.. ...|..||+||.. +. +...+..+-++.+++++.++..++
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 3458889998532 111222221110 0235578888754 22 222233456889999999999999
Q ss_pred HhhcC
Q 036738 359 FNMKA 363 (364)
Q Consensus 359 ~~~~a 363 (364)
+.+++
T Consensus 280 L~~k~ 284 (445)
T PRK12422 280 LERKA 284 (445)
T ss_pred HHHHH
Confidence 87653
No 90
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.35 E-value=5.6e-07 Score=79.16 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=56.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc-ccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCcc-----Chhhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH-EFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIW-----NEDDG 284 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~ 284 (364)
....++|.|++|+|||||++.+++.+.. +|+..+|+..+.+. ..+...+++.+...+......... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4567899999999999999999998654 58888888754332 126777777772222111111100 01111
Q ss_pred HHHHHHh-cCCCeEEEEEecCC
Q 036738 285 INILGSR-LQHKKVLLVIDDVI 305 (364)
Q Consensus 285 ~~~l~~~-l~~~~~LlVlDdv~ 305 (364)
....... -.+++.+|++|++.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHH
Confidence 1222211 25799999999985
No 91
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.34 E-value=7e-06 Score=79.21 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=76.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccc--eEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGS--SFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINIL 288 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 288 (364)
....+.|+|++|+|||+|++.+++.+...++.. .|+. ...+...+...+... . ...+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~------~----~~~~ 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN------T----MEEF 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC------c----HHHH
Confidence 345689999999999999999999987665432 2332 223333444433211 1 1223
Q ss_pred HHhcCCCeEEEEEecCCCH---H-HHHHHhccCCC-CCCCcEEEEEeCCh-h--------hhhhCCCCceeeCCCCCHhH
Q 036738 289 GSRLQHKKVLLVIDDVIDS---K-QLEYLAGKHGW-YGSGSRIIITSRDE-G--------LLKTNRVDEVYKPNGLNYNE 354 (364)
Q Consensus 289 ~~~l~~~~~LlVlDdv~~~---~-~~~~l~~~~~~-~~~gs~iliTtr~~-~--------v~~~~~~~~~~~l~~L~~~e 354 (364)
.+.+. +.-+|||||++.. . ..+.+...+.. ...+..+|+||... . +...+..+.++++++.+.++
T Consensus 206 ~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 206 KEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred HHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 33333 3458999999532 1 11222221110 02355678877653 1 22233345678999999999
Q ss_pred HHHHHhhcC
Q 036738 355 ALQLFNMKA 363 (364)
Q Consensus 355 a~~L~~~~a 363 (364)
..+++.+++
T Consensus 285 r~~il~~~~ 293 (450)
T PRK00149 285 RIAILKKKA 293 (450)
T ss_pred HHHHHHHHH
Confidence 999987653
No 92
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=4.5e-06 Score=82.94 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=91.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+....... ..... +.....
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c-~~c~~c 80 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPC-GTCEMC 80 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCC-ccCHHH
Confidence 445578999999999998888754 2345678999999999999999998764321100 00000 111111
Q ss_pred HHHHHHHhcC----CCCCccChhhh---HHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQLLKL----TDNRIWNEDDG---INILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~l~~~----~~~~~~~~~~~---~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+....... ........++. .+.+... ...++-++|||+++. ....+.|+..+......+.+|+++.+.
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1111110000 00000111111 1111111 124566899999963 455666666555444566676666443
Q ss_pred -hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 -GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 -~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......+++.+++.++....+.+
T Consensus 161 ~kll~tI~SR~~~i~f~~l~~~el~~~L~~ 190 (585)
T PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRK 190 (585)
T ss_pred hhhhHHHHhccceeeCCCCCHHHHHHHHHH
Confidence 33221 12345778888988887776654
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.33 E-value=9.2e-06 Score=77.37 Aligned_cols=130 Identities=22% Similarity=0.205 Sum_probs=73.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhccccc--ceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEG--SSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
...+.|+|++|+|||+|++.+++.+....+. .+|+. ...+...+...+... .. ..+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~------~~----~~~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN------KM----EEFK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC------CH----HHHH
Confidence 3568999999999999999999987665432 23332 223333444443211 11 2223
Q ss_pred HhcCCCeEEEEEecCCCH---HH-HHHHhccCCCC-CCCcEEEEEeCC-hh--------hhhhCCCCceeeCCCCCHhHH
Q 036738 290 SRLQHKKVLLVIDDVIDS---KQ-LEYLAGKHGWY-GSGSRIIITSRD-EG--------LLKTNRVDEVYKPNGLNYNEA 355 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~---~~-~~~l~~~~~~~-~~gs~iliTtr~-~~--------v~~~~~~~~~~~l~~L~~~ea 355 (364)
+.+.+ .-+|+|||++.. +. .+.+...+... ..+..+|+|+.. +. +...+..+..+++++.+.++-
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHH
Confidence 33332 348999999632 11 12222221110 235568887754 22 222233345789999999999
Q ss_pred HHHHhhcC
Q 036738 356 LQLFNMKA 363 (364)
Q Consensus 356 ~~L~~~~a 363 (364)
.+++.+++
T Consensus 274 ~~il~~~~ 281 (405)
T TIGR00362 274 LAILQKKA 281 (405)
T ss_pred HHHHHHHH
Confidence 99887653
No 94
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.31 E-value=8.9e-07 Score=72.09 Aligned_cols=65 Identities=26% Similarity=0.381 Sum_probs=57.3
Q ss_pred cEEEccccccC-cccHHHHHHHHHHcC-CCeEEeeCCCCCC--CCCchHHHHHHHHhcceEEEEeeccc
Q 036738 15 DVFLSFRGADT-RKNFISHLYAALNGK-GIYVFKDDEELEK--GESISPRLLKAIEASRIAIIVFSKNY 79 (364)
Q Consensus 15 dvfiSy~~~D~-~~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~~~~~l~~s~~~v~v~S~~~ 79 (364)
.|||||++... +..+|..|+..|+.. |+.|.+|.|+... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 59999987432 467899999999999 9999999999854 78999999999999999999999655
No 95
>PRK06620 hypothetical protein; Validated
Probab=98.31 E-value=2e-06 Score=74.14 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=64.2
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL 292 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (364)
+.+.|+|++|+|||+|++.+++.... .++. ... . .. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~------~~~--~---~~-------------------------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK------DIF--F---NE-------------------------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc------hhh--h---ch-------------------------hHH
Confidence 56899999999999999987765421 1211 000 0 00 001
Q ss_pred CCCeEEEEEecCCCHH--HHHHHhccCCCCCCCcEEEEEeCChh-------hhhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 293 QHKKVLLVIDDVIDSK--QLEYLAGKHGWYGSGSRIIITSRDEG-------LLKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 293 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iliTtr~~~-------v~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+ ..-+|++||++... .+-.+...+. ..|..+|+|++.+. +...+..+-+++++++++++..+++.+.
T Consensus 84 ~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 84 E-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred h-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHH
Confidence 1 22478899997432 2223322222 34668999887532 2223334558999999999988887654
No 96
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.7e-05 Score=76.74 Aligned_cols=167 Identities=13% Similarity=0.103 Sum_probs=89.6
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-----cccceEEeecccccc-ccC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-----FEGSSFLANVREKSE-REG 257 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~-~~~ 257 (364)
|.....++|.+..+..|...+... .-.+...++|+.|+||||+|+.++..+... .+|..... ...... ...
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~--~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n-c~~i~~g~~~ 88 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ--RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN-CVEIDKGSFP 88 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH-HHHHhcCCCC
Confidence 445567899999999999998764 234456789999999999999999876421 11111000 000000 000
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCC-h
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRD-E 333 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~-~ 333 (364)
++.. +.........+...+.+.+... ..+++-++|+|+++. ....+.++..+....+...+|++|.+ .
T Consensus 89 d~~e--------idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 89 DLIE--------IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred cEEE--------EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 0000 0000000001111111122111 134667999999974 34556666555544445566655543 2
Q ss_pred hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 ~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......+.+.+++.++....+.+
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~ 189 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKR 189 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHH
Confidence 33221 12345789999999988777654
No 97
>CHL00181 cbbX CbbX; Provisional
Probab=98.29 E-value=2.7e-05 Score=70.27 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=71.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc-c-ccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE-F-EGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
...+.++|++|+||||+|+.+++.+... + ...-|+. . +... +.....+.. .......+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v-----~~~~----l~~~~~g~~------~~~~~~~l~ 119 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----V-----TRDD----LVGQYIGHT------APKTKEVLK 119 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----e-----cHHH----HHHHHhccc------hHHHHHHHH
Confidence 4458899999999999999999875322 1 1111222 0 1111 222221111 111112222
Q ss_pred HhcCCCeEEEEEecCCCH-----------HHHHHHhccCCCCCCCcEEEEEeCChhhhhh--------CCCCceeeCCCC
Q 036738 290 SRLQHKKVLLVIDDVIDS-----------KQLEYLAGKHGWYGSGSRIIITSRDEGLLKT--------NRVDEVYKPNGL 350 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~--------~~~~~~~~l~~L 350 (364)
+. ..-+|+||+++.. +....+...+.....+.+||.++....+... -.....++++++
T Consensus 120 ~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 120 KA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred Hc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 22 2248999999642 3344555545443455667777654332111 013457899999
Q ss_pred CHhHHHHHHhhc
Q 036738 351 NYNEALQLFNMK 362 (364)
Q Consensus 351 ~~~ea~~L~~~~ 362 (364)
+.+|..+++.+.
T Consensus 197 t~~el~~I~~~~ 208 (287)
T CHL00181 197 TPEELLQIAKIM 208 (287)
T ss_pred CHHHHHHHHHHH
Confidence 999999988654
No 98
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.28 E-value=1.4e-05 Score=75.30 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=86.1
Q ss_pred cccccccchhHHHHHHhhcC----------CCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 187 LKKLVGIDSRLEELRFLMDK----------GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
-..+.|.+...++|.+.+.. ..-..++-+.|+|++|+|||+||+.+++.....|- .+.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~--------- 211 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV--------- 211 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe---------
Confidence 34577888888887775431 01134567899999999999999999987654321 111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH-------------H---HHHHHhccCCCC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS-------------K---QLEYLAGKHGWY 320 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~ 320 (364)
...+ .....+. ........+.......+.+|+||+++.. . .+..++..+..+
T Consensus 212 --~s~l----~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 212 --GSEF----VQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred --hHHH----HHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 0011 1111000 0111122233334567899999997532 0 122333333211
Q ss_pred --CCCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhh
Q 036738 321 --GSGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 321 --~~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
..+..||.||...+.... ...+..++++..+.++..++|..
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQT 327 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHH
Confidence 235667778876543322 12456789999999888888763
No 99
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.28 E-value=1.7e-05 Score=77.63 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=76.4
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhccccc--ceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEG--SSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
..+.|+|..|+|||.|+..+++.....+.. +.|+. ...++..+...+... ....+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~----------~~~~f~~ 373 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG----------KGDSFRR 373 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc----------cHHHHHH
Confidence 458999999999999999999987654332 23332 333444444433211 1122333
Q ss_pred hcCCCeEEEEEecCCCH---HHH-HHHhccCCC-CCCCcEEEEEeCCh---------hhhhhCCCCceeeCCCCCHhHHH
Q 036738 291 RLQHKKVLLVIDDVIDS---KQL-EYLAGKHGW-YGSGSRIIITSRDE---------GLLKTNRVDEVYKPNGLNYNEAL 356 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~iliTtr~~---------~v~~~~~~~~~~~l~~L~~~ea~ 356 (364)
.+.. .-+|||||+... +.+ +.|...+.. ...+..|||||... .+...+..+-+++|++.+.+.-.
T Consensus 374 ~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 374 RYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred Hhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 3333 358899999532 211 122221111 13356788888752 23333445668899999999999
Q ss_pred HHHhhcC
Q 036738 357 QLFNMKA 363 (364)
Q Consensus 357 ~L~~~~a 363 (364)
++|.+++
T Consensus 453 aIL~kka 459 (617)
T PRK14086 453 AILRKKA 459 (617)
T ss_pred HHHHHHH
Confidence 9998754
No 100
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.9e-05 Score=75.89 Aligned_cols=167 Identities=12% Similarity=0.116 Sum_probs=89.7
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc------ccceEEeecc-cccccc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF------EGSSFLANVR-EKSERE 256 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~-~~~~~~ 256 (364)
|.....++|.+..+..|...+..+ .-.+.+.++|++|+||||+|+.+++.+...- .|+....+.. ......
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 445678899999999999988753 2345678999999999999999998864320 0100000000 000000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
++. .+.+.......+..+....+... ..+++-++|+|+++. ....+.|...+......+.+|++|.+.
T Consensus 91 -d~~--------~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~ 161 (451)
T PRK06305 91 -DVL--------EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEI 161 (451)
T ss_pred -ceE--------EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCCh
Confidence 000 00000000001111111111111 124566889999963 344555655555444566676666432
Q ss_pred -hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 -GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 -~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......+++.+++.++....+.+
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~~ 191 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLAL 191 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHHH
Confidence 22222 12345789999999988776654
No 101
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.5e-06 Score=75.53 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=72.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh----cccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS----HEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGIN 286 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 286 (364)
-.+++.++||||.|||+|++++++++. ..|.....+. . +..+++.+.+.+-++ ......+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i-----nshsLFSKWFsESgK-------lV~kmF~ 239 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I-----NSHSLFSKWFSESGK-------LVAKMFQ 239 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E-----ehhHHHHHHHhhhhh-------HHHHHHH
Confidence 347899999999999999999999854 3355444443 2 344445444443211 1233344
Q ss_pred HHHHhcCC--CeEEEEEecCCCHHH-----------------HHHHhccCCCC--CCCcEEEEEeCCh----hhhhhCCC
Q 036738 287 ILGSRLQH--KKVLLVIDDVIDSKQ-----------------LEYLAGKHGWY--GSGSRIIITSRDE----GLLKTNRV 341 (364)
Q Consensus 287 ~l~~~l~~--~~~LlVlDdv~~~~~-----------------~~~l~~~~~~~--~~gs~iliTtr~~----~v~~~~~~ 341 (364)
.+.+.+.+ .-+++.+|+|.+... ...++-.+... .++ .+|+||.|- +++-....
T Consensus 240 kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N-vliL~TSNl~~siD~AfVDRA 318 (423)
T KOG0744|consen 240 KIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN-VLILATSNLTDSIDVAFVDRA 318 (423)
T ss_pred HHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC-EEEEeccchHHHHHHHhhhHh
Confidence 45555544 445667898864211 11122111111 133 455666552 12211223
Q ss_pred CceeeCCCCCHhHHHHHHhh
Q 036738 342 DEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 342 ~~~~~l~~L~~~ea~~L~~~ 361 (364)
+-...+++-+.+.-.+++..
T Consensus 319 Di~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744|consen 319 DIVFYVGPPTAEAIYEILKS 338 (423)
T ss_pred hheeecCCccHHHHHHHHHH
Confidence 34567787777766666654
No 102
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.8e-05 Score=78.89 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=91.2
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..+..|...+..+ .-.+...++|+.|+||||+|+.++..+-..-....+ .++ . ..
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~--------~pC-~---~C 79 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL--------EPC-Q---EC 79 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC--------Cch-h---HH
Confidence 445567899999999999988764 334567899999999999999999876432110000 000 0 00
Q ss_pred HHHHHH------HhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeC-Ch
Q 036738 264 RQLVSQ------LLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSR-DE 333 (364)
Q Consensus 264 ~~l~~~------l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr-~~ 333 (364)
...... +.+.......+..++.+.+... ..+++-++|+|+++ +...+..|+..+......+.+|++|. ..
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 000000 0000000011111222222211 13566689999996 34556667665554445555555544 33
Q ss_pred hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 334 GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 334 ~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+... ......+++.+++.++....+..
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEF 188 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHH
Confidence 44322 22346889999999998877754
No 103
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.24 E-value=4.7e-06 Score=79.11 Aligned_cols=151 Identities=14% Similarity=0.188 Sum_probs=86.2
Q ss_pred ccccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccC
Q 036738 188 KKLVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG 257 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 257 (364)
..+.|.+.++++|.+.+... .-....-+.|+|++|+|||+||+.+++.....|- .+. . +
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~--~--s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV--G--S---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe--c--c----
Confidence 45678888888888765321 0134556889999999999999999998765431 111 0 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHH----------------HHHHHhccCCCC-
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK----------------QLEYLAGKHGWY- 320 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 320 (364)
.+ . ....+. ........+.....+.+.+|+||+++... .+-.++..+..+
T Consensus 252 eL---~----~k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 EL---I----QKYLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred hh---h----hhhcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 11 0 000000 00111122222334578899999874210 112222222211
Q ss_pred -CCCcEEEEEeCChhhhhhC-----CCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 -GSGSRIIITSRDEGLLKTN-----RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 -~~gs~iliTtr~~~v~~~~-----~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..||.||...+.+... ..+..+++++.+.++..++|..+
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~ 366 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIH 366 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHH
Confidence 2356788888765443331 23567899999999999998754
No 104
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.3e-05 Score=77.72 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=92.0
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-ccc--ceEEeeccccccccCCHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-FEG--SSFLANVREKSEREGGVI 260 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~--~~~~~~~~~~~~~~~~~~ 260 (364)
|.....++|.+.....|...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ... -|..+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C------------- 74 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC------------- 74 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc-------------
Confidence 445677899999999999988654 344566899999999999999999886321 000 01110
Q ss_pred HHHHHHHHHH----hcCCCCCccChhhhHHHHHH---h-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEe
Q 036738 261 SFQRQLVSQL----LKLTDNRIWNEDDGINILGS---R-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITS 330 (364)
Q Consensus 261 ~~~~~l~~~l----~~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTt 330 (364)
.....+.... ...........++..+.+.. . ..+++-++|+|+++. .+....|+..+......+++|++|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 0000000000 00000000011222222211 0 124566889999974 455666766665555677777777
Q ss_pred CChh-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 331 RDEG-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 331 r~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.++. +... ......+++.+++.++..+.+.+
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~ 187 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKT 187 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHH
Confidence 6542 2111 12346889999999988777653
No 105
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.23 E-value=2.8e-05 Score=70.53 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=100.5
Q ss_pred ccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHH
Q 036738 186 ILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQ 265 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (364)
..++|.+|+.++..+..++...+..-+..|.|+|..|.|||.+.+.+.+.... ..+|+..+ +-+ ....++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~----ecf-t~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCV----ECF-TYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehH----Hhc-cHHHHHHH
Confidence 35679999999999999998866334445689999999999999999987733 35677633 223 67778888
Q ss_pred HHHHHhcCCCCCc------cChhhhHHHHHHh--c--CCCeEEEEEecCCCHHHH-----HHHhccCCCCCCCcEEEEEe
Q 036738 266 LVSQLLKLTDNRI------WNEDDGINILGSR--L--QHKKVLLVIDDVIDSKQL-----EYLAGKHGWYGSGSRIIITS 330 (364)
Q Consensus 266 l~~~l~~~~~~~~------~~~~~~~~~l~~~--l--~~~~~LlVlDdv~~~~~~-----~~l~~~~~~~~~gs~iliTt 330 (364)
|+.+......... .+....+..+.++ . .++.++|||||++...+. ..+.....-......+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 8887631111110 1112223333331 1 246899999999754432 22221110001223444444
Q ss_pred CC---hhhhhhCCCC--ceeeCCCCCHhHHHHHHhh
Q 036738 331 RD---EGLLKTNRVD--EVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 331 r~---~~v~~~~~~~--~~~~l~~L~~~ea~~L~~~ 361 (364)
-. .......+.- -++..+.-+.+|-.++|.+
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 32 2222223322 2567888999999988864
No 106
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.4e-05 Score=78.69 Aligned_cols=166 Identities=13% Similarity=0.127 Sum_probs=90.8
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+.....|...+..+ .-.+...++|+.|+||||+|+.+++.+...-... ..+. +.....
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~--~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC-~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG--KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPC-NECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCC-CccHHH
Confidence 455678999999999999998764 3456678899999999999999998764321100 0000 000111
Q ss_pred HHHHHHHhc----CCCCCccChh---hhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCC-
Q 036738 264 RQLVSQLLK----LTDNRIWNED---DGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRD- 332 (364)
Q Consensus 264 ~~l~~~l~~----~~~~~~~~~~---~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~- 332 (364)
..+...... .........+ ++.+.+... ..+++-++|||+++. ......|+..+......+.+|++|.+
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 111000000 0000001111 111111111 134667889999974 45566676665544445555555543
Q ss_pred hhhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 333 EGLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
..+... ......+++.+++.++....+..
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKY 189 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHH
Confidence 333322 12345778889998887776653
No 107
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=3.7e-06 Score=77.52 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=56.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc-ccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccCh-----hhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH-EFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNE-----DDG 284 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~ 284 (364)
..+..+|+|++|+|||||++.+++.+.. +|+..+|+..+++.. ..+..+++.+...+........... ...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 4456899999999999999999998654 689999988655422 2566666666532211111111000 011
Q ss_pred HHHHHHh--cCCCeEEEEEecCC
Q 036738 285 INILGSR--LQHKKVLLVIDDVI 305 (364)
Q Consensus 285 ~~~l~~~--l~~~~~LlVlDdv~ 305 (364)
. ...++ ..++.++|++|++.
T Consensus 245 i-e~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 245 I-EKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred H-HHHHHHHHcCCCEEEEEEChH
Confidence 1 11122 36799999999995
No 108
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.5e-05 Score=78.29 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=92.3
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-----cccceEEeeccccccccCC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-----FEGSSFLANVREKSEREGG 258 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~ 258 (364)
|.....++|.+..+..|...+..+ .-.+...++|+.|+||||+|+.+++.+... .+|...
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C------------- 76 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC------------- 76 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc-------------
Confidence 455678899999999999998764 345568899999999999999999986432 111100
Q ss_pred HHHHHHHHHHHH----hcCCCCCccChhhhHHH---HHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEE
Q 036738 259 VISFQRQLVSQL----LKLTDNRIWNEDDGINI---LGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIII 328 (364)
Q Consensus 259 ~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~---l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ili 328 (364)
.....+.... ...........++.... +... ..+++-++|+|+++ +...++.|+..+....+.+.+|.
T Consensus 77 --~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 77 --SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred --hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEE
Confidence 0000000000 00000000111111111 1111 13456689999996 44556677766665456667766
Q ss_pred EeCCh-hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 329 TSRDE-GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 329 Ttr~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+|.+. .+... ......++..+++.++..+.+.+
T Consensus 155 ~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~ 189 (563)
T PRK06647 155 ATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKK 189 (563)
T ss_pred ecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHH
Confidence 66443 33222 12345688999998888777654
No 109
>CHL00176 ftsH cell division protein; Validated
Probab=98.19 E-value=1.7e-05 Score=78.93 Aligned_cols=153 Identities=16% Similarity=0.242 Sum_probs=85.6
Q ss_pred ccccccccchhHHHHHHhh---cCCC------CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 186 ILKKLVGIDSRLEELRFLM---DKGP------SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L---~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
....+.|.+...+++.+.+ .... ....+-+.|+|++|+|||+||+.++...... |+. .
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----i---- 247 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----I---- 247 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----c----
Confidence 3456778877666665543 3211 1334568999999999999999999875332 222 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCCC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGWY 320 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 320 (364)
+...+.... .+ .........+.......+++|+|||++.. ..+..++..+..+
T Consensus 248 -s~s~f~~~~----~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~ 316 (638)
T CHL00176 248 -SGSEFVEMF----VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF 316 (638)
T ss_pred -cHHHHHHHh----hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc
Confidence 001111100 00 01112223344555678899999999633 1133343333211
Q ss_pred --CCCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 --GSGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 --~~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..||.||...+..+. ...+..+.++..+.++-.++|..+
T Consensus 317 ~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~ 365 (638)
T CHL00176 317 KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVH 365 (638)
T ss_pred cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHH
Confidence 234556666665443332 124567888888998888888754
No 110
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.7e-05 Score=76.50 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=91.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc------cc-eEEeecccccccc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE------GS-SFLANVREKSERE 256 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~-~~~~~~~~~~~~~ 256 (364)
|.....++|.+.....|...+..+ .-.+.+.++|+.|+||||+|+.++..+..... |. |--|..-.....+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 445567899999999999988763 23456889999999999999999987642110 00 0000000000000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHH---HHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEe
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINIL---GSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITS 330 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l---~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTt 330 (364)
++.. + ........++....+ ... ..+++=++|||+++. ....+.|+..+.....++.+|++|
T Consensus 91 -n~~~--------l---d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 91 -NIHE--------L---DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred -ceEE--------e---cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 0000 0 000001111111111 111 123455889999964 455666766665545566666655
Q ss_pred -CChhhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 331 -RDEGLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 331 -r~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
....+... .....++++.+++.++....+.+
T Consensus 159 t~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ 191 (614)
T PRK14971 159 TEKHKILPTILSRCQIFDFNRIQVADIVNHLQY 191 (614)
T ss_pred CCchhchHHHHhhhheeecCCCCHHHHHHHHHH
Confidence 43444332 23456889999999998877754
No 111
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.1e-05 Score=76.16 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=89.7
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+.....|..++..+. -.+.+.++|+.|+||||+|+.+++.+........ ..... +.....
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-------~~~~C-g~C~~C 81 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-------TPEPC-GKCELC 81 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-------CCCCC-cccHHH
Confidence 3455678999999999999887642 2356789999999999999999998654211000 00001 111111
Q ss_pred HHHHHHHhc----CCCCCccChhhhHHHHHHh----cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 264 RQLVSQLLK----LTDNRIWNEDDGINILGSR----LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 264 ~~l~~~l~~----~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
..+...... .........+...+.+... ..+++-++|||+++. ......|+..+......+.+|++|.+.
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 111110000 0000001111111111111 124556899999974 455666666665444555666555443
Q ss_pred -hhhhh-CCCCceeeCCCCCHhHHHHHHh
Q 036738 334 -GLLKT-NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 334 -~v~~~-~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
.+... ......+++.+++.++....+.
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLS 190 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 33222 2234577888888888776654
No 112
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.17 E-value=3e-05 Score=75.80 Aligned_cols=153 Identities=17% Similarity=0.240 Sum_probs=83.2
Q ss_pred ccccccccchhHHHHHHhhc---CC------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 186 ILKKLVGIDSRLEELRFLMD---KG------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~---~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
...++.|.+...+++.+++. .. .....+-+.++|++|+|||+||+.++....-.| +. .
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i---- 119 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----I---- 119 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----c----
Confidence 34567888877666655432 10 113345689999999999999999998753322 21 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHH----------------HHHHHhccCCCC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK----------------QLEYLAGKHGWY 320 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 320 (364)
+...+.. ...+. ........+.......+.+|+|||++... .+..++..+..+
T Consensus 120 -~~~~~~~----~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 120 -SGSDFVE----MFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred -cHHHHHH----HHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 1111111 11000 11122233344445677899999995421 122333332211
Q ss_pred --CCCcEEEEEeCChhhhh-----hCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 --GSGSRIIITSRDEGLLK-----TNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 --~~gs~iliTtr~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..||.||..+...+ ....+..++++..+.++-.++|..+
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHH
Confidence 22444555665543222 1234567899999998888888653
No 113
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.7e-05 Score=77.13 Aligned_cols=165 Identities=13% Similarity=0.137 Sum_probs=89.1
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+.....|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...-... ..+. +.....
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~---------~~~c-~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT---------AEPC-NVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC---------CCCC-CccHHH
Confidence 445678999999999999988763 2345678999999999999999998764320000 0000 000000
Q ss_pred HHHHHH-------HhcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCC-
Q 036738 264 RQLVSQ-------LLKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRD- 332 (364)
Q Consensus 264 ~~l~~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~- 332 (364)
..+... +.+.......+..++...+... ...++-++|||+++. ......|+..+......+.+|++|.+
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 000000 0000000011111111212111 134556889999964 34566666655544456666665544
Q ss_pred hhhhhh-CCCCceeeCCCCCHhHHHHHHh
Q 036738 333 EGLLKT-NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 333 ~~v~~~-~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
..+... ......+++.+++.++....+.
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~L~ 188 (576)
T PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLR 188 (576)
T ss_pred hhhhHHHHHhhhhhhcCCCCHHHHHHHHH
Confidence 333322 2234577888898888776654
No 114
>PRK08116 hypothetical protein; Validated
Probab=98.15 E-value=1.1e-05 Score=72.11 Aligned_cols=102 Identities=21% Similarity=0.148 Sum_probs=55.8
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL 292 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (364)
..+.|+|.+|+|||.||..+++.+..+...++|+. ...++..+........ ..+ ...+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~---~~~----~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG---KED----ENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc---ccc----HHHHHHHh
Confidence 35899999999999999999998766533334443 3334444443322111 111 11233334
Q ss_pred CCCeEEEEEecCC--CHHH--HHHHhccCCC-CCCCcEEEEEeCCh
Q 036738 293 QHKKVLLVIDDVI--DSKQ--LEYLAGKHGW-YGSGSRIIITSRDE 333 (364)
Q Consensus 293 ~~~~~LlVlDdv~--~~~~--~~~l~~~~~~-~~~gs~iliTtr~~ 333 (364)
.+-. ||||||+. .... ...+...+.. ...+..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4333 89999993 2222 2222222211 13456788888653
No 115
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3e-05 Score=69.88 Aligned_cols=145 Identities=16% Similarity=0.232 Sum_probs=85.3
Q ss_pred cccchhHHHHHHhhcCCC----------CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 191 VGIDSRLEELRFLMDKGP----------SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 191 ~Gr~~~~~~l~~~L~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
=|-+.++++|++.....- =..++=|.++||||.|||-||+++|++.... |+..++
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg---------- 218 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG---------- 218 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc----------
Confidence 367777887777543211 1556778999999999999999999987654 343211
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhc-CCCeEEEEEecCCCH----------------HHHHHHhccCCCCC--
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRL-QHKKVLLVIDDVIDS----------------KQLEYLAGKHGWYG-- 321 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~-- 321 (364)
.++.....+.. ..+...+.+.. .+.+++|.+|+++.. ..+=.|+..+.-|.
T Consensus 219 ---SElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 ---SELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ---HHHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 12233322221 11222222222 567999999998632 11223444444333
Q ss_pred CCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHh
Q 036738 322 SGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 322 ~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
...+||..|--.++++. -..+..++++.-+.+.-.++|.
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 35788887765554443 2356788898666655566664
No 116
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.14 E-value=4.3e-06 Score=77.47 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=59.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccCh-----hh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNE-----DD 283 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~ 283 (364)
.....++|+|++|+|||||++.+++.+... |+..+|+..+++- ...+..+++.+...+........... ..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~ 242 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEM 242 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHH
Confidence 345679999999999999999999987655 8888888754321 22677777777543322221111110 11
Q ss_pred hHHHHHH-hcCCCeEEEEEecCCC
Q 036738 284 GINILGS-RLQHKKVLLVIDDVID 306 (364)
Q Consensus 284 ~~~~l~~-~l~~~~~LlVlDdv~~ 306 (364)
..+.... ...+++++|++|++..
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhH
Confidence 1111111 1368999999999963
No 117
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.14 E-value=1.5e-05 Score=63.35 Aligned_cols=28 Identities=39% Similarity=0.389 Sum_probs=24.7
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhccc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
..+.|+|++|+||||+++.++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 4789999999999999999999876654
No 118
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=4.6e-05 Score=69.65 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=93.5
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc---------------cccceEEeecccc
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE---------------FEGSSFLANVREK 252 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~ 252 (364)
..++|.+...+.+...+..+ .-.+...++|+.|+||+++|..++..+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 46789999999999988764 234688999999999999999999875432 2222333211000
Q ss_pred ccccCCHHHHHHHHHHHHhc-CCC---CCccChhhhHHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcE
Q 036738 253 SEREGGVISFQRQLVSQLLK-LTD---NRIWNEDDGINILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSR 325 (364)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~-~~~---~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ 325 (364)
.... ... ........ ... .......++...+... ..+++-++|+|+++ +......|+..+.... .+.
T Consensus 82 ~g~~-~~~----~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGKL-ITA----SEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cccc-cch----hhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 0000 000 00001000 000 0001111112222111 13566789999996 4455666766665545 456
Q ss_pred EEEEeCCh-hhhhh-CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 326 IIITSRDE-GLLKT-NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 326 iliTtr~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+|++|.+. .++.. ......+++.+++.++..+.+.+.
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence 66666554 33322 234568899999999999888653
No 119
>PRK12377 putative replication protein; Provisional
Probab=98.13 E-value=9.4e-05 Score=65.06 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=28.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
...+.|+|++|+|||+||..+++.+......+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998765533344543
No 120
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=8.3e-05 Score=68.63 Aligned_cols=157 Identities=14% Similarity=0.048 Sum_probs=87.2
Q ss_pred cccc-cchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc--ccceEEeeccccccccCCHHHHHHH
Q 036738 189 KLVG-IDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF--EGSSFLANVREKSEREGGVISFQRQ 265 (364)
Q Consensus 189 ~~~G-r~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (364)
.++| .+...+.|...+..+ .-.+...++|+.|+||||+|+.+++.+-..- ... -+ +.......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~--~c----------g~C~~c~~ 71 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE--PC----------GTCTNCKR 71 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CC----------CcCHHHHH
Confidence 3456 566677777777553 3455678999999999999999998764321 000 00 00000000
Q ss_pred HHHHHhcCCC-------CCccChhhhHHHHHHh----cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 266 LVSQLLKLTD-------NRIWNEDDGINILGSR----LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 266 l~~~l~~~~~-------~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
+.. +...+ ......++..+.+... ..+.+=++|+|+++. ......|+..+.....++.+|++|.+
T Consensus 72 ~~~--~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 72 IDS--GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred Hhc--CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 000 00000 0001112221111111 234555789999963 45566677767655677888888776
Q ss_pred hh-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 333 EG-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 333 ~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+. +... ......+++.+++.++..+.|..
T Consensus 150 ~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 150 KHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 43 2222 22456889999999998887754
No 121
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.11 E-value=1.1e-05 Score=83.12 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=43.5
Q ss_pred ccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 190 LVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 190 ~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
++||+.+++.|...+..-......++.|.|.+|||||+|.+++...+...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 78999999999998876554667799999999999999999999987655
No 122
>PRK08181 transposase; Validated
Probab=98.09 E-value=2.5e-05 Score=69.59 Aligned_cols=34 Identities=24% Similarity=0.086 Sum_probs=26.1
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEE
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFL 246 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 246 (364)
..+.|+|++|+|||.||..+++....+...+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 3589999999999999999998765443333444
No 123
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.09 E-value=0.00017 Score=63.36 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEE
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFL 246 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 246 (364)
+..+.++...-. .....+.++|.+|+|||+||..+++.+......+.++
T Consensus 85 l~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 344444443322 2234689999999999999999999876543334444
No 124
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00012 Score=67.28 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=47.2
Q ss_pred CeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChhhhh-h-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 295 KKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLK-T-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 295 ~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~-~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
++-++|||+++ +......++..+.....++.+|++|.+..... . ......+.+.+++.+++.+.+..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHH
Confidence 44455789997 55667777777765566788888888764322 2 22346789999999999888765
No 125
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.06 E-value=6e-05 Score=70.32 Aligned_cols=130 Identities=21% Similarity=0.168 Sum_probs=82.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
.-..+.|||+.|.|||.|++++.+......+...++.. ........++..+.. ...+.+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~---------~se~f~~~~v~a~~~----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL---------TSEDFTNDFVKALRD----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec---------cHHHHHHHHHHHHHh----------hhHHHHHH
Confidence 45679999999999999999999998777664444431 233344444444322 12234555
Q ss_pred hcCCCeEEEEEecCCCH---HH-HHHHh---ccCCCCCCCcEEEEEeCCh---------hhhhhCCCCceeeCCCCCHhH
Q 036738 291 RLQHKKVLLVIDDVIDS---KQ-LEYLA---GKHGWYGSGSRIIITSRDE---------GLLKTNRVDEVYKPNGLNYNE 354 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~---~~-~~~l~---~~~~~~~~gs~iliTtr~~---------~v~~~~~~~~~~~l~~L~~~e 354 (364)
.. .--+|++||++-. +. -+.+. ..+. ..|..||+|++.. .+...+..+-++++.+.+.+.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 55 4558999999521 11 12222 2222 2344899998552 333344556789999999999
Q ss_pred HHHHHhhcC
Q 036738 355 ALQLFNMKA 363 (364)
Q Consensus 355 a~~L~~~~a 363 (364)
...++.+++
T Consensus 249 r~aiL~kka 257 (408)
T COG0593 249 RLAILRKKA 257 (408)
T ss_pred HHHHHHHHH
Confidence 999987753
No 126
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.04 E-value=5e-05 Score=65.63 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=42.0
Q ss_pred ccccccccccchhHHHHHH----hhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 184 PKILKKLVGIDSRLEELRF----LMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~----~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
+.....++|.+.+.+.|.+ ++.. ....-+.+||..|+|||+|++.+.+++..+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 4456779999999888865 3433 345568899999999999999999988765
No 127
>PRK06526 transposase; Provisional
Probab=98.02 E-value=1.7e-05 Score=70.19 Aligned_cols=27 Identities=26% Similarity=0.122 Sum_probs=23.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...+.|+|++|+|||+||..++.....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 346899999999999999999987544
No 128
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.02 E-value=3.3e-05 Score=63.98 Aligned_cols=129 Identities=20% Similarity=0.170 Sum_probs=67.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEee---ccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLAN---VREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINI 287 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 287 (364)
...+++|.|++|+|||||++.++...... .+.+++.. +.-..+.. .+.. ..+.+.+..........-+...-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~-~~~~--~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRP-YLPL--GTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCC-cccc--ccHHHHhhccCCCCCCHHHHHHHH
Confidence 44589999999999999999999865432 33333321 00001111 1100 011222211011222222333344
Q ss_pred HHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 288 LGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 288 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
+...+..++-++++|+-. |......+...+... +..+|++|++...... +++++.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 666666777899999874 444333333333222 4678999988765432 4555554
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.01 E-value=0.00011 Score=75.22 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=38.4
Q ss_pred cccccccchhHHHHHHhhcCC------CCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 187 LKKLVGIDSRLEELRFLMDKG------PSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+|.+..++.|...+... .+....++.++|++|+|||+||+.+++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 356789888888887765421 112345688999999999999999999773
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.00 E-value=5.1e-05 Score=66.97 Aligned_cols=159 Identities=14% Similarity=0.180 Sum_probs=92.2
Q ss_pred cccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc--ccccceEEeeccccccccCCHH
Q 036738 183 KPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH--EFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
.|...+.++|.+..+..|...+.. ...+....+||+|.|||+-|..++..+.. -|++++.-.+.+... +..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gis 103 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GIS 103 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----ccc
Confidence 355667889999999999888766 34678899999999999999999988654 355555432221111 111
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhc--CCCe-EEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCh-h
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRL--QHKK-VLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIIITSRDE-G 334 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iliTtr~~-~ 334 (364)
+.. ....+...+........ .-++ -++|||+++.. +.|..+...+..+...+++++.+-.- .
T Consensus 104 -----vvr-------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 104 -----VVR-------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred -----chh-------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 000 00111111110010000 1122 47899999854 56777877776666667765544332 1
Q ss_pred hhhh-CCCCceeeCCCCCHhHHHHHHh
Q 036738 335 LLKT-NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 335 v~~~-~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
+... ......+..++|.+++...-|.
T Consensus 172 ii~pi~SRC~KfrFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFKKLKDEDIVDRLE 198 (346)
T ss_pred CChHHHhhHHHhcCCCcchHHHHHHHH
Confidence 1111 1123467788888877665554
No 131
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=3.7e-05 Score=76.20 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=44.3
Q ss_pred cccccccccccchhHHHHHHhhcCCC--CCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 183 KPKILKKLVGIDSRLEELRFLMDKGP--SADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~l~~~L~~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.|.....++|.+..+.++..++.... ....+++.|+|++|+||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35566789999999999999886533 13446799999999999999999998754
No 132
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.99 E-value=2.3e-06 Score=78.46 Aligned_cols=141 Identities=23% Similarity=0.288 Sum_probs=90.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
...+.+.++|+|||||||++-.+++ ++.-|...+++.......++. -+. .++...... ....-+.....+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~-~v~----~~~ag~~gl---~~~~g~~~~~~~~ 82 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPA-LVF----PTLAGALGL---HVQPGDSAVDTLV 82 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchh-HhH----HHHHhhccc---ccccchHHHHHHH
Confidence 3457899999999999999999999 888899888887666665543 222 222221111 1222233445677
Q ss_pred HhcCCCeEEEEEecCCCHH-HHHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeCCCCCHh-HHHHHHhhc
Q 036738 290 SRLQHKKVLLVIDDVIDSK-QLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKPNGLNYN-EALQLFNMK 362 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l~~L~~~-ea~~L~~~~ 362 (364)
....+++.++|+||..... +-..+.-.+....+.-+++.|+|+...... ...+.+++|+.. ++.++|...
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g---e~~~~~~~L~~~d~a~~lf~~r 154 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG---EVHRRVPSLSLFDEAIELFVCR 154 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc---cccccCCccccCCchhHHHHHH
Confidence 7888999999999996542 222222223222455678999997644332 456677887775 677777543
No 133
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.99 E-value=0.00011 Score=60.62 Aligned_cols=144 Identities=18% Similarity=0.151 Sum_probs=72.4
Q ss_pred ccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHh
Q 036738 192 GIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLL 271 (364)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 271 (364)
|.+...+.|...+..+ .-...+.++|+.|+||+++|..+++.+-..-.... .+ +.......+...
T Consensus 1 gq~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c----------~~c~~c~~~~~~-- 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PC----------GECRSCRRIEEG-- 65 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-------------SSSHHHHHHHTT--
T ss_pred CcHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CC----------CCCHHHHHHHhc--
Confidence 4556667777777654 34556899999999999999999987543211100 00 000000000000
Q ss_pred cCCC------CC---ccChhhhHHHHHHhc-----CCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChh-
Q 036738 272 KLTD------NR---IWNEDDGINILGSRL-----QHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEG- 334 (364)
Q Consensus 272 ~~~~------~~---~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~- 334 (364)
...+ .. .-..++.. .+...+ .+++=++||||++ +.+....|+..+.....++++|++|.+..
T Consensus 66 ~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp -CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred cCcceEEEecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 0000 00 01111111 222222 3356689999997 45666777776665567889999988865
Q ss_pred hhhh-CCCCceeeCCCCC
Q 036738 335 LLKT-NRVDEVYKPNGLN 351 (364)
Q Consensus 335 v~~~-~~~~~~~~l~~L~ 351 (364)
++.. ......+.+.+|+
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 2222 2234566776654
No 134
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.98 E-value=0.00014 Score=75.60 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=40.3
Q ss_pred cccccccchhHHHHHHhhcCC------CCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 187 LKKLVGIDSRLEELRFLMDKG------PSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++|.+..++.+...+... .......+.+.|++|+|||++|+.++..+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 356889999998888776531 11234578899999999999999999876543
No 135
>PRK10536 hypothetical protein; Provisional
Probab=97.98 E-value=0.00011 Score=64.33 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=37.0
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHH-h-hcccc
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDL-I-SHEFE 241 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~ 241 (364)
..+.++......+..+|.. ..++.+.|++|+|||+||..++.. + ...|.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~ 105 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAEALIHKDVD 105 (262)
T ss_pred ccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCee
Confidence 4466777777777777754 238999999999999999999874 4 34444
No 136
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.97 E-value=0.0002 Score=74.33 Aligned_cols=52 Identities=17% Similarity=0.390 Sum_probs=38.7
Q ss_pred cccccccchhHHHHHHhhcCC------CCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 187 LKKLVGIDSRLEELRFLMDKG------PSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...++|.+..+..|...+... .+.....+.++|++|+|||+||+.+++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 346789998888887765421 1123357889999999999999999987643
No 137
>PRK09183 transposase/IS protein; Provisional
Probab=97.97 E-value=3.2e-05 Score=68.76 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=22.6
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...+.|+|++|+|||+||..++.....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999877433
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.97 E-value=8.3e-05 Score=76.20 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=39.0
Q ss_pred ccccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 188 KKLVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+.|.+..++.|.+++... .-...+.+.|+|++|+|||+||+.+++.....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 45779999988887765321 01334568999999999999999999877543
No 139
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.96 E-value=4.3e-05 Score=61.63 Aligned_cols=113 Identities=22% Similarity=0.238 Sum_probs=63.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
...+++|.|++|.|||||++.++..... ..+.+++.......--+ . ...-+...-.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~-~-------------------lS~G~~~rv~lar 83 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFE-Q-------------------LSGGEKMRLALAK 83 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEc-c-------------------CCHHHHHHHHHHH
Confidence 4468999999999999999999876543 34445543210000000 0 1111122233555
Q ss_pred hcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 291 RLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
.+..++-++++|+.. |......+...+... +..||++|++....... +++++.+
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 566677799999874 444444433333222 34788899887655432 2344444
No 140
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.95 E-value=4.4e-05 Score=64.12 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=69.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCH---HHHHHHHHHHHhcC-----CCCCccChh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGV---ISFQRQLVSQLLKL-----TDNRIWNED 282 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~-----~~~~~~~~~ 282 (364)
...+++|.|++|+|||||++.++..... ..+.+++....-........ .....+++..+... .......-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 4458999999999999999999876543 35555554221000000000 11111223322111 111111122
Q ss_pred hhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC-CC-CcEEEEEeCChhhhhhCCCCceeeC
Q 036738 283 DGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY-GS-GSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 283 ~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
...-.+...+...+-++++|+-. |....+.+...+... .. +..||++|++....... ++.++.+
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 22334666677788899999974 444433333322211 22 67899999987655332 2344433
No 141
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.95 E-value=8.5e-05 Score=66.26 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=73.6
Q ss_pred ccccccc---hhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccce-EEeeccccccccCCHHHHH
Q 036738 188 KKLVGID---SRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSS-FLANVREKSEREGGVISFQ 263 (364)
Q Consensus 188 ~~~~Gr~---~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~ 263 (364)
+..+|-. ..++.|.++|........+.+.|+|.+|.|||++++.+++.....++... .+..+.-...+..+...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 3455543 34566677776655466678999999999999999999987544443211 1111111233334899999
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcC-CCeEEEEEecCCCH
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQ-HKKVLLVIDDVIDS 307 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~ 307 (364)
..|+..+...... ..............++ -+-=+||||++++.
T Consensus 114 ~~IL~~lgaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 114 SAILEALGAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHhCcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 9999998665432 2333333333334443 34558999999763
No 142
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.94 E-value=5.8e-05 Score=66.00 Aligned_cols=56 Identities=29% Similarity=0.484 Sum_probs=44.4
Q ss_pred ccccccccccchhHHHHHHhhcC--CCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDK--GPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
|.....|+|.++..+.|.=++.. ..+...--+.++||||.||||||..+++.+...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 55667899999998888766653 112455678999999999999999999987654
No 143
>PF14516 AAA_35: AAA-like domain
Probab=97.93 E-value=0.00063 Score=62.86 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=94.6
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
+...+..+.|...-+.+.+.|.. ....+.|.|+-.+|||+|...+.+.....=...+++..-........+...++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~----~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ----PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc----CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 44566778998555555555543 24589999999999999999999887654222334432221122233566666
Q ss_pred HHHHHHHhcCCCCC----------ccChhhhHHHHHHhc---CCCeEEEEEecCCCHHH----HHHHhccC----CC--C
Q 036738 264 RQLVSQLLKLTDNR----------IWNEDDGINILGSRL---QHKKVLLVIDDVIDSKQ----LEYLAGKH----GW--Y 320 (364)
Q Consensus 264 ~~l~~~l~~~~~~~----------~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~----~~~l~~~~----~~--~ 320 (364)
..++..+...-... ..........+.+++ .+++.+|+||+++.... ...+...+ .. .
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 66665554332211 112222233444433 36899999999974311 11222111 00 0
Q ss_pred C--CC-cEEEE-EeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 G--SG-SRIII-TSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 ~--~g-s~ili-Ttr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
. -. -++++ .+........ ...+..++|++|+.+|...|+.++
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence 0 01 12222 2211111111 123457899999999999998764
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=0.00012 Score=75.82 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=39.4
Q ss_pred ccccccchhHHHHHHhhcC------CCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 188 KKLVGIDSRLEELRFLMDK------GPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..++|.+..++.+.+.+.. ..+....++.++|++|+|||.||+.+++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 4678999888888776532 112344578999999999999999999887543
No 145
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.92 E-value=4e-05 Score=65.37 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=66.2
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL 292 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (364)
.++.|.|++|+||||++..++..+.......++...- .. + . ...-...+..+ .. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~-E-~--~~~~~~~~i~q----~~-vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PI-E-F--VHESKRSLINQ----RE-VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-Cc-c-c--cccCccceeee----cc-cCCCccCHHHHHHHHh
Confidence 3689999999999999999888776544444333211 00 0 0 00000001000 00 0111233455677777
Q ss_pred CCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh
Q 036738 293 QHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 293 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~ 338 (364)
+..+-++++|++.+.+.+....... ..|..++.|+...+....
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 7778899999999888776655432 246568888887765443
No 146
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00011 Score=72.02 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=89.0
Q ss_pred ccccccchhHHHHHHhhcCCC---CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHH
Q 036738 188 KKLVGIDSRLEELRFLMDKGP---SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQR 264 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 264 (364)
.+-+|.+...+.|.++|.-.. .-..++++++||||+|||+|++.+|+.+...|- ++ .+++..+..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv-R~---sLGGvrDEA-------- 390 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV-RI---SLGGVRDEA-------- 390 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE-EE---ecCccccHH--------
Confidence 456899999999988875321 245689999999999999999999998877652 11 122222211
Q ss_pred HHHHHHhcCCCCCccC-hhhhHHHHHHhcCCCeEEEEEecCCCH--------HH--HHHHhccC-CCCC--------CCc
Q 036738 265 QLVSQLLKLTDNRIWN-EDDGINILGSRLQHKKVLLVIDDVIDS--------KQ--LEYLAGKH-GWYG--------SGS 324 (364)
Q Consensus 265 ~l~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~--~~~l~~~~-~~~~--------~gs 324 (364)
++.++...-..+ +....+.+.+ .+-++-+++||+++.. .. ++.|-|.. ..|. .=|
T Consensus 391 ----EIRGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 391 ----EIRGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ----HhccccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 122222211111 2222333332 3456778999998631 11 22221111 0000 012
Q ss_pred -EEEEEeCCh-h-h-hhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 325 -RIIITSRDE-G-L-LKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 325 -~iliTtr~~-~-v-~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.+.|+|-|. + + ...++.-+++++..-+++|-.++-.++
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~ 507 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRH 507 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHh
Confidence 355566552 1 1 112234568999999999988876654
No 147
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.91 E-value=0.00012 Score=75.01 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=83.2
Q ss_pred ccccccchhHHHHHHhhcC----------CCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccC
Q 036738 188 KKLVGIDSRLEELRFLMDK----------GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG 257 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 257 (364)
..+.|.+...+.|.+.+.. ..-...+-+.++|++|+|||+||+.+++.....| +.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~v----~---- 519 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IAV----R---- 519 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEE----e----
Confidence 4456777777777665431 0113345689999999999999999999865432 210 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--------------HHHHHHhccCCCC--C
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--------------KQLEYLAGKHGWY--G 321 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~ 321 (364)
.. .++....+ .+...+...+...-...+.+|+||+++.. ..+..++..+... .
T Consensus 520 -~~----~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 520 -GP----EILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -hH----HHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 00 11111100 11111222233333567899999998532 1123343333211 2
Q ss_pred CCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhh
Q 036738 322 SGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 322 ~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+..||.||..++.++. -..+..+.++..+.++-.++|..
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~ 633 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKI 633 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHH
Confidence 34445556655543332 13466889999999999888854
No 148
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.91 E-value=1.9e-05 Score=66.04 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=25.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
..-+.|+|++|+|||.||..+++..-.+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 346999999999999999999987544322344443
No 149
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=9.8e-05 Score=73.93 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=72.9
Q ss_pred cccccccchhHHHHHHhhcC------CCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 187 LKKLVGIDSRLEELRFLMDK------GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
....+|.+..+..+.+.+.. ..+.+..+....||.|+|||-||+.++..+...=+..+-++ ++++.+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~E------ 562 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYME------ 562 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHH------
Confidence 35678999888888665532 11255678888999999999999999998754323333332 333222
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeE-EEEEecCC--CHHHHHHHhccCC
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKV-LLVIDDVI--DSKQLEYLAGKHG 318 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~--~~~~~~~l~~~~~ 318 (364)
+.-++.+.+.++ .--..++ -..|-+..+.++| +|.||++. +++.+..|+..+.
T Consensus 563 ---kHsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 563 ---KHSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred ---HHHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 223334434332 2111222 1234555566665 88899996 5677777776554
No 150
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00021 Score=67.63 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=73.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHH---
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGIN--- 286 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--- 286 (364)
.....+.+.|++|+|||+||..++. ...|+-+-.+. ... . ...+......
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS---pe~-----m-----------------iG~sEsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS---PED-----M-----------------IGLSESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC---hHH-----c-----------------cCccHHHHHHHHH
Confidence 5566788999999999999999984 55676433322 100 0 0011111222
Q ss_pred -HHHHhcCCCeEEEEEecCCCHH------------HHHHHhccCCCC-CCCcEEEE--EeCChhhhhhCCC----Cceee
Q 036738 287 -ILGSRLQHKKVLLVIDDVIDSK------------QLEYLAGKHGWY-GSGSRIII--TSRDEGLLKTNRV----DEVYK 346 (364)
Q Consensus 287 -~l~~~l~~~~~LlVlDdv~~~~------------~~~~l~~~~~~~-~~gs~ili--Ttr~~~v~~~~~~----~~~~~ 346 (364)
......+..--+||+||+...- .++.|+-.+... ..|-+++| ||....++..++. ...++
T Consensus 589 k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIH 668 (744)
T ss_pred HHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheee
Confidence 2333445667799999985432 233333322222 23445444 7777788888763 45788
Q ss_pred CCCCCH-hHHHHHHhh
Q 036738 347 PNGLNY-NEALQLFNM 361 (364)
Q Consensus 347 l~~L~~-~ea~~L~~~ 361 (364)
|+.++. ++..+.+++
T Consensus 669 Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEE 684 (744)
T ss_pred cCccCchHHHHHHHHH
Confidence 999887 666666653
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.88 E-value=0.0002 Score=72.82 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=38.7
Q ss_pred ccccccchhHHHHHHhhcCC------CCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 188 KKLVGIDSRLEELRFLMDKG------PSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..++|.+..++.|...+... .......+.++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999888887766521 113345789999999999999999998874
No 152
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.88 E-value=0.00012 Score=70.63 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=81.1
Q ss_pred cccccccchhHHHHHHhhcC-------CCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCH
Q 036738 187 LKKLVGIDSRLEELRFLMDK-------GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGV 259 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~-------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 259 (364)
...+-|.+...+.+.+.... -.-..++-+.++|++|+|||.+|+.+++.+.-.| +....
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~---------- 292 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDV---------- 292 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEh----------
Confidence 34566776666555442110 0113456789999999999999999999765332 11100
Q ss_pred HHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHH--------------HHHHHhccCCCCCCCcE
Q 036738 260 ISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK--------------QLEYLAGKHGWYGSGSR 325 (364)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~ 325 (364)
..+. ....+ .+.......+...-...+++|+||+++... .+..+...+.....+.-
T Consensus 293 ~~l~----~~~vG------ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 293 GKLF----GGIVG------ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred HHhc----ccccC------hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 0000 00000 011111222222234578999999986321 11222222222233444
Q ss_pred EEEEeCChhhhh-----hCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 326 IIITSRDEGLLK-----TNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 326 iliTtr~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
||.||.+...+. ....+..+.++.-+.++-.++|..+
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~ 404 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIH 404 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 555666553222 2235678899999999999988754
No 153
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=9.1e-05 Score=61.64 Aligned_cols=130 Identities=15% Similarity=0.227 Sum_probs=66.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC-C--C----ccChhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD-N--R----IWNEDD 283 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~--~----~~~~~~ 283 (364)
...+++|.|++|.|||||++.++..... ..+.+++.... ... . ........+ .-+..... . . ..+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~-~-~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD-L-DLESLRKNI-AYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh-c-CHHHHHhhE-EEEcCCchhccchHHHHhhCHHH
Confidence 4458999999999999999999986543 34555543211 000 0 000000000 00000000 0 0 011111
Q ss_pred -hHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 284 -GINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 284 -~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
..-.+...+..++-+|++|+-. |......+...+.....+..||++|++...... +++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1233556666777899999974 333333332222111235689999998876654 4555554
No 154
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00016 Score=69.38 Aligned_cols=95 Identities=24% Similarity=0.269 Sum_probs=61.2
Q ss_pred cccccccchhHHHHHHhhcCCC---------CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccC
Q 036738 187 LKKLVGIDSRLEELRFLMDKGP---------SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG 257 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 257 (364)
...+=|.+..+.+|.+++.... -..++-|.++||+|+|||.||++++.++.-.| +. .+.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isAp-- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISAP-- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecch--
Confidence 3456688988888887654311 14556789999999999999999998875443 22 1111
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCC
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVI 305 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 305 (364)
+++..+ ...+.+.+.+.+.+.....+++++||+++
T Consensus 258 -------eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 -------EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -------hhhccc------CcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 122211 12233333444555667889999999996
No 155
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.86 E-value=6.1e-05 Score=62.85 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=59.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecc--ccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVR--EKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINIL 288 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 288 (364)
...+++|.|++|+|||||++.++..+... .+.+.+.... -..+.. . ...-+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~-~-------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYI-D-------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccC-C-------------------CCHHHHHHHHH
Confidence 44589999999999999999998765432 3444443210 000000 0 11111223345
Q ss_pred HHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC--CCCcEEEEEeCChhhhhh
Q 036738 289 GSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY--GSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 289 ~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~--~~gs~iliTtr~~~v~~~ 338 (364)
...+..++-++++|+-. |....+.+...+... ..+..||++|++......
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 56666677899999974 433333222222111 123678889988765543
No 156
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.85 E-value=9.9e-05 Score=61.54 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=64.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccc-cc-cCCHHHHHHHHHHHHhcCC---CCCccCh--h
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKS-ER-EGGVISFQRQLVSQLLKLT---DNRIWNE--D 282 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~l~~~~---~~~~~~~--~ 282 (364)
....+++|.|++|+|||||.+.+... .+.+.+....... .. ..-+.+ .+.+..+.... ....... .
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEEEhH--HHHHHHcCCCccccCCCcCcCCHH
Confidence 34568999999999999999988531 1112211100000 00 000001 23344332111 1111111 1
Q ss_pred -hhHHHHHHhcCCC--eEEEEEecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 283 -DGINILGSRLQHK--KVLLVIDDVI---DSKQLEYLAGKHGWY-GSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 283 -~~~~~l~~~l~~~--~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
...-.+...+..+ +-++++|+.. |....+.+...+... ..|..||++|++...... ++.++.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2223355555566 7789999874 444333333222211 246789999999876543 4566555
No 157
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.84 E-value=4.1e-05 Score=66.76 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
..|.++|..+- ....++.|+|++|+|||+||.+++.........++|+.
T Consensus 10 ~~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44566665433 55679999999999999999999987655545667776
No 158
>PRK06921 hypothetical protein; Provisional
Probab=97.84 E-value=0.00011 Score=65.63 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=28.3
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEe
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLA 247 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 247 (364)
...+.++|++|+|||.||..+++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578999999999999999999987654 33345554
No 159
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.83 E-value=8.5e-05 Score=70.72 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=39.1
Q ss_pred cccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 187 LKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...++||+..++.+...+..+. .|.|.|++|+|||+||+.++.....
T Consensus 19 ~~~i~gre~vI~lll~aalag~-----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE-----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC-----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 3569999999999988765433 4899999999999999999987643
No 160
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.82 E-value=0.00012 Score=59.92 Aligned_cols=33 Identities=30% Similarity=0.245 Sum_probs=26.0
Q ss_pred EEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 215 IGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
+.|+|++|+||||++..++.....+-...+|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 689999999999999999988765434455554
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.82 E-value=0.00012 Score=61.35 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=66.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHh--cCC------------CC
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLL--KLT------------DN 276 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~------------~~ 276 (364)
...+++|.|++|+|||||++.++..... ..+.+++... .+......+-..+. ... ..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~--------~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~ 97 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV--------PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE--------EHHHHHHHHHhhEEEEccCCeeecccHHHhhcc
Confidence 3458999999999999999999986543 2344444311 00000000000000 000 00
Q ss_pred CccChhhhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 277 RIWNEDDGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 277 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
....-+...-.+...+-.++-++++|+.. |....+.+...+.....+..||++|++...... +++++.+
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11111222334566666777899999984 333333333322211236789999998876653 4555544
No 162
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.82 E-value=0.00038 Score=62.15 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+.|.|++|+|||+||+.++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998653
No 163
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.81 E-value=1.5e-05 Score=63.91 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=21.0
Q ss_pred EEEEccCccchHHHHHHHHHHh
Q 036738 215 IGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999988
No 164
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.80 E-value=0.00011 Score=63.84 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=29.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
.-.++|.|.+|+|||||+..+...+...|.....+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 346899999999999999999998988996555443
No 165
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.78 E-value=9.2e-05 Score=69.87 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=41.5
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc--ccccceEEe
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH--EFEGSSFLA 247 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~ 247 (364)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.+.. .+....|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 45677888888888887643 36889999999999999999988754 344444444
No 166
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.78 E-value=0.00015 Score=64.71 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=64.6
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCC------C-ccChhhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDN------R-IWNEDDG 284 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~-~~~~~~~ 284 (364)
...++|.|++|+|||||.+.++..+... .+.+++.... ... - + ...++.......... + ..+...
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~-~-d---~~~ei~~~~~~~~q~~~~~r~~v~~~~~k- 182 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGI-V-D---ERSEIAGCVNGVPQHDVGIRTDVLDGCPK- 182 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eec-c-h---hHHHHHHHhcccccccccccccccccchH-
Confidence 4678999999999999999999877643 3334433111 000 0 0 011222111110000 0 111111
Q ss_pred HHHHHHhc-CCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhh
Q 036738 285 INILGSRL-QHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLK 337 (364)
Q Consensus 285 ~~~l~~~l-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~ 337 (364)
...+...+ ...+-++++|++...+.+..+...+. .|..+|+||++..+..
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 11233333 35788999999988777776665542 5778999999876533
No 167
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.78 E-value=0.00016 Score=62.04 Aligned_cols=62 Identities=26% Similarity=0.342 Sum_probs=40.3
Q ss_pred hhhHHHHHHhcCCCeEEEEEecCC---CHH---H-HHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 282 DDGINILGSRLQHKKVLLVIDDVI---DSK---Q-LEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 282 ~~~~~~l~~~l~~~~~LlVlDdv~---~~~---~-~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
++..-++.+.+-..+-+|+.|+-. |.. . ++.+..... ..|..||+.|+++.++..+ +.++.+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~--~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK--ERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH--hcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 444556888888889999999752 222 2 222222211 3477899999999999875 455544
No 168
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.0001 Score=65.31 Aligned_cols=74 Identities=24% Similarity=0.178 Sum_probs=45.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
...-+.++|++|+|||.||.++++++. +....+.+. ....++.++...... ......+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~----------~~~el~~~Lk~~~~~---------~~~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI----------TAPDLLSKLKAAFDE---------GRLEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE----------EHHHHHHHHHHHHhc---------CchHHHHHH
Confidence 344689999999999999999999987 433333333 345555555554322 111112222
Q ss_pred hcCCCeEEEEEecCC
Q 036738 291 RLQHKKVLLVIDDVI 305 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~ 305 (364)
.+ .+--||||||+-
T Consensus 164 ~l-~~~dlLIiDDlG 177 (254)
T COG1484 164 EL-KKVDLLIIDDIG 177 (254)
T ss_pred Hh-hcCCEEEEeccc
Confidence 22 234489999994
No 169
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.77 E-value=4.9e-05 Score=65.44 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=33.5
Q ss_pred hhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 203 LMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 203 ~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
+|..+- ....++.|+|++|+|||+++..++......-..++|+.
T Consensus 4 ~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGV-ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344332 55679999999999999999999887655545677776
No 170
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.77 E-value=0.00019 Score=61.04 Aligned_cols=114 Identities=21% Similarity=0.191 Sum_probs=59.9
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD 275 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (364)
+.+.+...+.. ..+++.|.|++|+||||+++.+...+...- ..+.+. . ........+.......
T Consensus 6 Q~~a~~~~l~~----~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~-----a----pT~~Aa~~L~~~~~~~-- 69 (196)
T PF13604_consen 6 QREAVRAILTS----GDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGL-----A----PTNKAAKELREKTGIE-- 69 (196)
T ss_dssp HHHHHHHHHHC----TCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEE-----E----SSHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHhc----CCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEE-----C----CcHHHHHHHHHhhCcc--
Confidence 34455555543 235789999999999999999988776652 233332 1 1222333333332110
Q ss_pred CCccChhhhHHHHHHhc---------CCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 276 NRIWNEDDGINILGSRL---------QHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 276 ~~~~~~~~~~~~l~~~l---------~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
..+ +...+.... ..+.-+||+|++. +...+..+..... ..++++|+.--.
T Consensus 70 --a~T---i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~ 130 (196)
T PF13604_consen 70 --AQT---IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDP 130 (196)
T ss_dssp --EEE---HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-T
T ss_pred --hhh---HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCc
Confidence 001 111111110 1234599999995 5567777776654 347788776543
No 171
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.77 E-value=0.00019 Score=62.55 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc------ccceEEe
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF------EGSSFLA 247 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 247 (364)
..|.++|..+- ....++.|+|++|+|||+||..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~-~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGI-PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCC-cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34555565433 5567999999999999999999987754443 4456665
No 172
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0011 Score=60.59 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=47.6
Q ss_pred CCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 294 HKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 294 ~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+++=++|||+++ +......|+..+.....++.+|++|.+.. ++.. ......+.+.+++.+++.+.+.+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHH
Confidence 456689999997 44566677776765567888888877643 3322 22356789999999998887754
No 173
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.0005 Score=64.23 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=100.3
Q ss_pred cccccccccchhHHHHHHhhcCCC-CCCceEEEEEccCccchHHHHHHHHHHhhccccc--ceEEeeccccccccCCHHH
Q 036738 185 KILKKLVGIDSRLEELRFLMDKGP-SADVRMIGICGMGGLGKTTLARVIYDLISHEFEG--SSFLANVREKSEREGGVIS 261 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 261 (364)
..+..++||+.++..+.+++...- .+..+.+.|.|-+|.|||.+...++......... .+++.+.+-. ....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~-----~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT-----EASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc-----chHH
Confidence 456789999999999999886522 2667789999999999999999999877655443 3555533211 3445
Q ss_pred HHHHHHHHHhcCCCCCccChhhhHHHHHHhc-CC-CeEEEEEecCCCHHH--HHHHhccCCCC-CCCcEEEEEe-CCh--
Q 036738 262 FQRQLVSQLLKLTDNRIWNEDDGINILGSRL-QH-KKVLLVIDDVIDSKQ--LEYLAGKHGWY-GSGSRIIITS-RDE-- 333 (364)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~-~~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~iliTt-r~~-- 333 (364)
++..|...+.......... .+....+..+. +. ..+|+|+|+++.... -..+...+.|. -+++|+|+.- -|-
T Consensus 222 iF~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 5555555552221111111 22333444444 33 478999999975421 11111112111 1355555432 221
Q ss_pred ---hhhhhC-----CCCceeeCCCCCHhHHHHHHhhc
Q 036738 334 ---GLLKTN-----RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 334 ---~v~~~~-----~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..+ -....+..+|-+.++-.++|.++
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence 111111 12346788999999999998764
No 174
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.76 E-value=0.00014 Score=66.10 Aligned_cols=98 Identities=18% Similarity=0.129 Sum_probs=55.7
Q ss_pred HHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcC--
Q 036738 197 LEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKL-- 273 (364)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 273 (364)
...|..+|. .+- ...+++-|+|++|+||||||.+++......-..++|+..- ... +. . .+..+...
T Consensus 40 i~~LD~~Lg~GGl-p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E----~~~-~~-~----~a~~lGvd~~ 108 (321)
T TIGR02012 40 SLSLDLALGVGGL-PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE----HAL-DP-V----YARKLGVDID 108 (321)
T ss_pred CHHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc----chh-HH-H----HHHHcCCCHH
Confidence 345566665 322 5667999999999999999999887765544445666511 111 11 1 12222111
Q ss_pred --CCCCccChhhhHHHHHHhc-CCCeEEEEEecCC
Q 036738 274 --TDNRIWNEDDGINILGSRL-QHKKVLLVIDDVI 305 (364)
Q Consensus 274 --~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 305 (364)
......+.++....+.... .+..-+||+|.+.
T Consensus 109 ~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 109 NLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 0112233444445454444 3467799999874
No 175
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.76 E-value=0.00017 Score=66.60 Aligned_cols=101 Identities=19% Similarity=0.136 Sum_probs=58.6
Q ss_pred HHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc-cceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCc
Q 036738 200 LRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE-GSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRI 278 (364)
Q Consensus 200 l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 278 (364)
+.+.+..- .....+.|+|++|+|||||++.+++.+..+.+ ..+.+..+ .+.......+...+...+........
T Consensus 123 vID~l~Pi--GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 123 VVDLVAPI--GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhheeec--CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 55555443 23346799999999999999999998766543 33233222 23333667777777665433221111
Q ss_pred c-C---hhhhHHHHHHhc--CCCeEEEEEecCC
Q 036738 279 W-N---EDDGINILGSRL--QHKKVLLVIDDVI 305 (364)
Q Consensus 279 ~-~---~~~~~~~l~~~l--~~~~~LlVlDdv~ 305 (364)
. . .......+.+++ .++..+||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1 0 111111222222 6899999999985
No 176
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.76 E-value=0.0025 Score=62.29 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=71.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhccccc---------ceEEeeccccccccCCH------------HHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEG---------SSFLANVREKSEREGGV------------ISFQRQLVSQL 270 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---------~~~~~~~~~~~~~~~~~------------~~~~~~l~~~l 270 (364)
.-.|+|+|++|+|||||.+.++...... .+ ..|+..-.........+ ....+..+..+
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 3468999999999999999997765433 11 11221111000000011 12222222222
Q ss_pred hcCCCCC-----ccCh-hhhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCC
Q 036738 271 LKLTDNR-----IWNE-DDGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRV 341 (364)
Q Consensus 271 ~~~~~~~-----~~~~-~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~ 341 (364)
+-..... ..+- +...-.+...+-.++-+||||+-. |.+.++.+...+..+ +| .||+.|+++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-
Confidence 2111100 1111 222334666667788999999874 345555555444422 23 6999999998887764
Q ss_pred CceeeCCC
Q 036738 342 DEVYKPNG 349 (364)
Q Consensus 342 ~~~~~l~~ 349 (364)
.+++.+.+
T Consensus 504 ~~i~~~~~ 511 (530)
T COG0488 504 TRIWLVED 511 (530)
T ss_pred ceEEEEcC
Confidence 55666553
No 177
>PHA00729 NTP-binding motif containing protein
Probab=97.76 E-value=0.00028 Score=60.69 Aligned_cols=26 Identities=31% Similarity=0.190 Sum_probs=22.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+.|+|.+|+||||||..+++++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999998764
No 178
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.75 E-value=2.7e-05 Score=64.25 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=66.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
...+++|.|++|+|||||.+.++..... ..+.+++.... ... . ....... ..+.-. .+...-+...-.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~-~~~-~-~~~~~~~---~~i~~~--~qLS~G~~qrl~lar 95 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKE-VSF-A-SPRDARR---AGIAMV--YQLSVGERQMVEIAR 95 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-CCc-C-CHHHHHh---cCeEEE--EecCHHHHHHHHHHH
Confidence 3458999999999999999999876543 34555554221 100 0 1111000 000000 011112222334566
Q ss_pred hcCCCeEEEEEecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 291 RLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY-GSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
.+-.++-++++|+.. |....+.+...+... ..+..||++|++....... ++.++.+
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 666777899999974 443333333222111 2366899999987654432 2344443
No 179
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.75 E-value=0.0012 Score=62.83 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=25.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.+.++.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999887654
No 180
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00043 Score=63.76 Aligned_cols=142 Identities=18% Similarity=0.078 Sum_probs=77.9
Q ss_pred ccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc---------------------cceEEee
Q 036738 190 LVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE---------------------GSSFLAN 248 (364)
Q Consensus 190 ~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~ 248 (364)
++|-+.....+..+..... .....+.++|++|+||||+|..+++.+..... ....+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred cccchhHHHHHHHHHHhcC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 4566667777777766432 23345899999999999999999998764322 111111
Q ss_pred ccccccccC--CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCc
Q 036738 249 VREKSEREG--GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGS 324 (364)
Q Consensus 249 ~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 324 (364)
.+.... ......+++........ ..++.-+++||+++.. .....+...+......+
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 011110 01111222221110000 0356779999999754 44556666565556777
Q ss_pred EEEEEeCCh-hhhhhC-CCCceeeCCCCCHh
Q 036738 325 RIIITSRDE-GLLKTN-RVDEVYKPNGLNYN 353 (364)
Q Consensus 325 ~iliTtr~~-~v~~~~-~~~~~~~l~~L~~~ 353 (364)
.+|++|.+. .+.... .....+.+.+.+..
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchHH
Confidence 888887743 333322 23345666664443
No 181
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.0015 Score=59.80 Aligned_cols=155 Identities=10% Similarity=0.053 Sum_probs=82.7
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc-----ccc-eEEeeccccccccCCHHHHHHHHHHHHh
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF-----EGS-SFLANVREKSEREGGVISFQRQLVSQLL 271 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 271 (364)
..|...+..+ .-.+-..++|+.|+||+++|..++..+-..- .|+ |-.|..-.....+ ++..+...
T Consensus 12 ~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP-D~~~i~p~------ 82 (325)
T PRK06871 12 QQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP-DFHILEPI------ 82 (325)
T ss_pred HHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC-CEEEEccc------
Confidence 3444455442 2345678999999999999999998754321 111 1000000000000 11100000
Q ss_pred cCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-CCCCceee
Q 036738 272 KLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT-NRVDEVYK 346 (364)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~-~~~~~~~~ 346 (364)
...........++.+.+... ..+++=++|+|+++ +......++..+....+++.+|++|.++. ++.. ......+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 00000111111111111111 13556688899997 44667777777766677888888887753 3323 23356889
Q ss_pred CCCCCHhHHHHHHhh
Q 036738 347 PNGLNYNEALQLFNM 361 (364)
Q Consensus 347 l~~L~~~ea~~L~~~ 361 (364)
+.+++.++..+.|.+
T Consensus 163 ~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 163 IHPPEEQQALDWLQA 177 (325)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999877754
No 182
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.73 E-value=0.00038 Score=71.69 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=38.9
Q ss_pred cccccchhHHHHHHhhcCC---CCCCceEEEEEccCccchHHHHHHHHHHhhccc
Q 036738 189 KLVGIDSRLEELRFLMDKG---PSADVRMIGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
..+|.+...+.|.+++... .....+++.++|++|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4678888888887765321 113445799999999999999999999876543
No 183
>PRK09354 recA recombinase A; Provisional
Probab=97.73 E-value=0.00016 Score=66.45 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=57.5
Q ss_pred HHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHH---HHHHhc
Q 036738 197 LEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQL---VSQLLK 272 (364)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~ 272 (364)
...|..+|. .+- ...+++-|+|++|+||||||.+++......-...+|+..- ..+ +. ..++.+ +..+..
T Consensus 45 i~~LD~~LG~GGi-p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E----~s~-~~-~~a~~lGvdld~lli 117 (349)
T PRK09354 45 SLALDIALGIGGL-PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE----HAL-DP-VYAKKLGVDIDNLLV 117 (349)
T ss_pred cHHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc----cch-HH-HHHHHcCCCHHHeEE
Confidence 445666676 332 5677899999999999999999987765554556677621 111 21 122222 111111
Q ss_pred CCCCCccChhhhHHHHHHhc-CCCeEEEEEecCC
Q 036738 273 LTDNRIWNEDDGINILGSRL-QHKKVLLVIDDVI 305 (364)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 305 (364)
....+.++....+...+ .+..-+||+|.+.
T Consensus 118 ---~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 118 ---SQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred ---ecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 12233444555555444 3467799999874
No 184
>PRK14974 cell division protein FtsY; Provisional
Probab=97.73 E-value=0.0015 Score=60.00 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+.++.++|++|+||||++..++..+...
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 346799999999999999999999877654
No 185
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00029 Score=66.74 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=36.6
Q ss_pred ccccccc---hhHHHHHHhhcCCC------CCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 188 KKLVGID---SRLEELRFLMDKGP------SADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 188 ~~~~Gr~---~~~~~l~~~L~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+..|.+ .|+++|.++|.+.. ..-++-|.++||||.|||-||++++.+-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3445665 46777777887643 2445678999999999999999999754
No 186
>PRK04296 thymidine kinase; Provisional
Probab=97.72 E-value=9.4e-05 Score=62.67 Aligned_cols=112 Identities=17% Similarity=0.061 Sum_probs=60.9
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC-CCccChhhhHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD-NRIWNEDDGINILGSR 291 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~ 291 (364)
.++.|+|+.|.||||++..++.+...+...+.++. ....... ... .+..++..... .......+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~~~-~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK--PAIDDRY-GEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe--ccccccc-cCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 47789999999999999999988765533333231 0000111 111 12222211100 011223334444444
Q ss_pred cCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCChh
Q 036738 292 LQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDEG 334 (364)
Q Consensus 292 l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~~ 334 (364)
..++.-+||+|++.- .+++..+...+. ..|..||+|.++.+
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 334556999999953 444554444332 46789999999843
No 187
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.71 E-value=0.00041 Score=65.64 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=75.1
Q ss_pred EEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcC
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQ 293 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (364)
++.|.|+-++|||||++.+....... .+++.......... .+ ..... .+...-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~----~l-~d~~~------------------~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRI----EL-LDLLR------------------AYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchh----hH-HHHHH------------------HHHHhhc
Confidence 89999999999999997777665444 44444211111111 00 11111 1111111
Q ss_pred CCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh------CCCCceeeCCCCCHhHHHHH
Q 036738 294 HKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT------NRVDEVYKPNGLNYNEALQL 358 (364)
Q Consensus 294 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~------~~~~~~~~l~~L~~~ea~~L 358 (364)
.++.+++||+|.....|......+...++. +|++|+-+..+... .|....+++-||+-.|-..+
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 277899999999999998877776655555 88888877544332 23455789999999888653
No 188
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.71 E-value=8.4e-05 Score=68.19 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=27.6
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
..+.++|++|+|||.||..+++.+......+.|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56999999999999999999998765433445544
No 189
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00012 Score=67.29 Aligned_cols=68 Identities=12% Similarity=-0.022 Sum_probs=49.1
Q ss_pred CCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 294 HKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 294 ~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+++=++|||+++ +......|+..+....+++.+|++|.+++ ++.. ......+.+.+++.++..+.|..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 455688999997 55677778777776677887777776643 3322 23346889999999999988764
No 190
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.70 E-value=0.00012 Score=61.00 Aligned_cols=130 Identities=21% Similarity=0.194 Sum_probs=65.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCC-C------ccChhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDN-R------IWNEDD 283 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~------~~~~~~ 283 (364)
...+++|.|++|+|||||++.++..... ..+.+++.... ... . ........+ .-+...... . ..+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~~-~-~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGAD-ISQ-W-DPNELGDHV-GYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEE-ccc-C-CHHHHHhhe-EEECCCCccccCcHHHHCcCHHH
Confidence 3458999999999999999999986543 24444443211 000 0 011110000 000000000 0 011111
Q ss_pred -hHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 284 -GINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY-GSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 284 -~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
..-.+...+..++-++++|+.. |....+.+...+... ..|..||++|++...... +++++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2234556666677799999974 433333322222111 236789999998876643 4555554
No 191
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00018 Score=69.17 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=94.7
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|....+++|.+.....|...+.... -..--...|+-|+||||+|+.++..+...-. ...+++ +.....
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~---------~~~ePC-~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKALNCENG---------PTAEPC-GKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHHhcCCCC---------CCCCcc-hhhhhh
Confidence 4455678999999999999887642 2334568899999999999999987532210 001111 111111
Q ss_pred HHHHHHHhcCCCCCc--------cChhhhHHHHHHhc-----CCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEE
Q 036738 264 RQLVSQLLKLTDNRI--------WNEDDGINILGSRL-----QHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIII 328 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~--------~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ili 328 (364)
..+......+. ...++. ..|.+.. .++.=+.|||+|+ +...+..|+..+........+|.
T Consensus 80 ----k~I~~g~~~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIl 154 (515)
T COG2812 80 ----KEINEGSLIDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFIL 154 (515)
T ss_pred ----HhhhcCCcccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEE
Confidence 11111111110 111111 1122222 3455688999997 56778888887765556666666
Q ss_pred EeCCh-hhhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 329 TSRDE-GLLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 329 Ttr~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.|.+. .+... ....+.|.+..++.++-...|..
T Consensus 155 ATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~ 189 (515)
T COG2812 155 ATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAA 189 (515)
T ss_pred ecCCcCcCchhhhhccccccccCCCHHHHHHHHHH
Confidence 55554 33222 23456889999999887777653
No 192
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.69 E-value=9.1e-05 Score=64.22 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
...|..+|..+- ....++.|.|++|+||||||.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345666665433 55678999999999999999999987655434455664
No 193
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.69 E-value=0.00016 Score=66.14 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=26.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+..++|||++|+|||.+|+.++..+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 567889999999999999999999987654
No 194
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00015 Score=72.64 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=90.5
Q ss_pred ccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc-ccccceEEeeccccccccCCHHHHHH
Q 036738 186 ILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH-EFEGSSFLANVREKSEREGGVISFQR 264 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ 264 (364)
..+..+||+.++..+.+.|.....+ .-.++|++|+|||+++.-++.++-. +.+.. ..+..-.+- ++..++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KN---NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~--L~~~~i~sL---D~g~Lv- 238 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKN---NPVLVGEPGVGKTAIVEGLAQRIVNGDVPES--LKDKRIYSL---DLGSLV- 238 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCC---CCeEecCCCCCHHHHHHHHHHHHhcCCCCHH--HcCCEEEEe---cHHHHh-
Confidence 3466899999999999999875422 2367899999999999999998643 32211 000000000 121111
Q ss_pred HHHHHHhcCCCCCccChhhhHHHHH-HhcCCCeEEEEEecCCC-----------HHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 265 QLVSQLLKLTDNRIWNEDDGINILG-SRLQHKKVLLVIDDVID-----------SKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
.. ..-..+.++.+..+- +.-...+.+|++|+++. .+.-..+.|.+.. +.--+|-.||-+
T Consensus 239 -------AG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~ 309 (786)
T COG0542 239 -------AG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLD 309 (786)
T ss_pred -------cc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHH
Confidence 11 112234444444443 33345589999999853 2233455565531 222244456655
Q ss_pred hhhhhhC-------CCCceeeCCCCCHhHHHHHHh
Q 036738 333 EGLLKTN-------RVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 333 ~~v~~~~-------~~~~~~~l~~L~~~ea~~L~~ 360 (364)
+ .-... ..-+.+.|+..+.+++..+|.
T Consensus 310 E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 310 E-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILR 343 (786)
T ss_pred H-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHH
Confidence 3 11111 134578899999999999885
No 195
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0002 Score=58.93 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=26.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEE
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFL 246 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 246 (364)
...+.|.|++|+|||||.+.++.-.+.. .+.++|
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~ 61 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYW 61 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEe
Confidence 3478999999999999999999866654 334444
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0017 Score=59.93 Aligned_cols=157 Identities=10% Similarity=0.006 Sum_probs=83.5
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc-----ccceE-EeeccccccccCCHHHHHHHHHHHH
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF-----EGSSF-LANVREKSEREGGVISFQRQLVSQL 270 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 270 (364)
-+.+...+..+ .-.+-..+.|+.|+||+++|..++..+-..- .|+.. -|..-.....+ ++..+.. -
T Consensus 11 ~~~l~~~~~~~--rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HP-D~~~i~p-----~ 82 (334)
T PRK07993 11 YEQLVGSYQAG--RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHP-DYYTLTP-----E 82 (334)
T ss_pred HHHHHHHHHcC--CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC-CEEEEec-----c
Confidence 34455555443 3455778999999999999999998763311 11110 00000000000 1110000 0
Q ss_pred hcCCCCCccChhhhHHHHHHh-cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-CCCCcee
Q 036738 271 LKLTDNRIWNEDDGINILGSR-LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT-NRVDEVY 345 (364)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~-~~~~~~~ 345 (364)
.+..........++.+.+... ..+++=++|||+++ +......|+..+....+++.+|++|.+.+ ++.. ......+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 000000111111111111111 13566689999997 45667777777776677888888887754 3322 2234578
Q ss_pred eCCCCCHhHHHHHHhh
Q 036738 346 KPNGLNYNEALQLFNM 361 (364)
Q Consensus 346 ~l~~L~~~ea~~L~~~ 361 (364)
.+.+++.+++.+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 163 YLAPPPEQYALTWLSR 178 (334)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 9999999998887753
No 197
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.67 E-value=0.00011 Score=62.48 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=42.3
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
|......||-++.++.+.-.... ...+-+.|.||||+||||-+..+++.+-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 44556789999998888877666 44677899999999999999999998644
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.66 E-value=0.0003 Score=64.05 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=55.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
..+-+.|+|+.|+|||.||.++++.+...-..+.|+. ...++..+....... +..+ .+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~------~~~~---~l~- 213 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG------SVKE---KID- 213 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC------cHHH---HHH-
Confidence 3456899999999999999999998765433344443 233444443332111 1111 222
Q ss_pred hcCCCeEEEEEecCC--CHHHHH--HHhccC-CCC-CCCcEEEEEeCC
Q 036738 291 RLQHKKVLLVIDDVI--DSKQLE--YLAGKH-GWY-GSGSRIIITSRD 332 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~--~~~~~~--~l~~~~-~~~-~~gs~iliTtr~ 332 (364)
.+ .+--||||||+. ....|. .++..+ ... ..+..+|+||--
T Consensus 214 ~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 214 AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 22 245689999994 223332 232222 111 244567888764
No 199
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.66 E-value=0.00019 Score=62.92 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=34.2
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc------cccceEEe
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE------FEGSSFLA 247 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 247 (364)
..|.++|..+- ....++.|+|++|+|||+||..++...... -..++|+.
T Consensus 6 ~~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 6 KALDELLGGGI-ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhhHhhccCCC-CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 34555565433 556789999999999999999998653222 24567766
No 200
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.66 E-value=0.00018 Score=61.10 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=51.7
Q ss_pred eEEEEEccCccchHHHHHHHHHH-h-hcccccceEEeecccccccc----CCHHH----HHHHHHHHHhcCCCCCccChh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL-I-SHEFEGSSFLANVREKSERE----GGVIS----FQRQLVSQLLKLTDNRIWNED 282 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~~~----~~~~~----~~~~l~~~l~~~~~~~~~~~~ 282 (364)
.++.+.|++|+|||.||.+.+-+ + ...|+..++....-+..+.. .+... .+.-+...+..... ....+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~--~~~~~ 97 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFG--KEKLE 97 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS---TTCHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhC--hHhHH
Confidence 48999999999999999988854 3 45577666655332211100 00000 01111111111000 00111
Q ss_pred hhHHH------HHHhcCC---CeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 283 DGINI------LGSRLQH---KKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 283 ~~~~~------l~~~l~~---~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
...+. -..++++ ...+||+|++. ++.+++.++..+ +.+|++|++--.
T Consensus 98 ~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 98 ELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp HHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred HHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 11000 0112234 35799999995 557788776554 789999998544
No 201
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=0.00029 Score=58.71 Aligned_cols=127 Identities=19% Similarity=0.159 Sum_probs=65.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHh--cCCCCCc----------
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLL--KLTDNRI---------- 278 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~---------- 278 (364)
...+++|.|++|+|||||++.++..... ..+.+++.... .. .. . . .....+. .......
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~-~~-~-~----~~~~~i~~~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKD-IK-KE-P-E----EVKRRIGYLPEEPSLYENLTVRENLK 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-cc-cc-h-H----hhhccEEEEecCCccccCCcHHHHhh
Confidence 3458999999999999999999875433 24444443210 00 00 0 0 0000000 0000000
Q ss_pred cChhh-hHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 279 WNEDD-GINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY-GSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 279 ~~~~~-~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
.+..+ ..-.+...+..++-++++|+.. |....+.+...+... ..|..+|++|++....... ++.++.+
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 11122 2234666677788899999974 333333332222111 2367899999987765543 2444444
No 202
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.64 E-value=0.00011 Score=65.06 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=56.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC------CCccChh--
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD------NRIWNED-- 282 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~-- 282 (364)
..+.++|.|.+|+|||||+..++++...+|+..+++..+++- ...+..+...+...-..... .+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 345789999999999999999999988888777766544432 22445555544432110000 0000011
Q ss_pred ---hhHHHHHHhc--C-CCeEEEEEecCCC
Q 036738 283 ---DGINILGSRL--Q-HKKVLLVIDDVID 306 (364)
Q Consensus 283 ---~~~~~l~~~l--~-~~~~LlVlDdv~~ 306 (364)
...-.+.+++ + ++.+||++||+..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122345555 3 8999999999853
No 203
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.64 E-value=0.00037 Score=57.55 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=38.9
Q ss_pred hhhhHHHHHHhcCCCeEEEEEecC----CCHHHHHHH--hccCCCCCCCcEEEEEeCChhhhhhCC
Q 036738 281 EDDGINILGSRLQHKKVLLVIDDV----IDSKQLEYL--AGKHGWYGSGSRIIITSRDEGLLKTNR 340 (364)
Q Consensus 281 ~~~~~~~l~~~l~~~~~LlVlDdv----~~~~~~~~l--~~~~~~~~~gs~iliTtr~~~v~~~~~ 340 (364)
-++..-.+.+.+-+++-+|+-|+- +..-.|+.+ +..+. ..|..||++|.+..+...+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 344455678888899999999965 333333322 22222 45899999999998877764
No 204
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.64 E-value=4.7e-05 Score=59.30 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.6
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999986
No 205
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.64 E-value=0.00028 Score=72.21 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=40.7
Q ss_pred ccccccchhHHHHHHhhcCC---CCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 188 KKLVGIDSRLEELRFLMDKG---PSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+|.+...+.|.++|... ......++.++|++|+||||+++.++..+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35789999999888777631 11345689999999999999999999877544
No 206
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.64 E-value=0.00037 Score=72.28 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=38.9
Q ss_pred cccccccchhHHHHHHhhcC------CCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 187 LKKLVGIDSRLEELRFLMDK------GPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...++|.+..++.|...+.. ..+.....+.++||+|+|||+||+.+++.+..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 35678999888888776542 11133456789999999999999999998744
No 207
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.64 E-value=0.0003 Score=69.09 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=38.9
Q ss_pred cccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 185 KILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.....++|.+..+..+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~---~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP---NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999998876542 34467899999999999999998753
No 208
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.63 E-value=0.0023 Score=58.97 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=36.7
Q ss_pred chhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 194 DSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
+.-.+.|.+.+...+...+.+|+|.|+=|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445666777766544677899999999999999999999988776
No 209
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.61 E-value=0.00021 Score=62.67 Aligned_cols=50 Identities=22% Similarity=0.116 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
+..|.++|..+- ....++.|.|++|+|||+|+.+++.....+-..+.|+.
T Consensus 11 i~~LD~~l~gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 345566665443 56678999999999999999999765433334455555
No 210
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00026 Score=68.67 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
..++-|.++||||+|||++|+++++.-.-.| +.. .. + +++....+ .++..+.+..+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----lsv----kg-p--------EL~sk~vG------eSEr~ir~iF~ 521 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LSV----KG-P--------ELFSKYVG------ESERAIREVFR 521 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCe-----eec----cC-H--------HHHHHhcC------chHHHHHHHHH
Confidence 5667899999999999999999998765554 221 00 0 11221111 11222233344
Q ss_pred HhcCCCeEEEEEecCCCHH-------------HHHHHhccCCCCCCCcEEEE---EeCChhhhhh----CCCCceeeCCC
Q 036738 290 SRLQHKKVLLVIDDVIDSK-------------QLEYLAGKHGWYGSGSRIII---TSRDEGLLKT----NRVDEVYKPNG 349 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~ili---Ttr~~~v~~~----~~~~~~~~l~~ 349 (364)
+.-+-.+++|.||+++... .+..|+..+.-......|+| |.|...+-.. -..+.++.+++
T Consensus 522 kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVpl 601 (693)
T KOG0730|consen 522 KARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPL 601 (693)
T ss_pred HHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecC
Confidence 4445567899999986431 24445444432223334444 3343322221 12567888888
Q ss_pred CCHhHHHHHHhhcC
Q 036738 350 LNYNEALQLFNMKA 363 (364)
Q Consensus 350 L~~~ea~~L~~~~a 363 (364)
-+.+-..++|+.++
T Consensus 602 PD~~aR~~Ilk~~~ 615 (693)
T KOG0730|consen 602 PDLEARLEILKQCA 615 (693)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888888887653
No 211
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.60 E-value=0.00021 Score=61.07 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh-cccccceEEeeccc---------------cccccCCH-HHHHHHHHHHHhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS-HEFEGSSFLANVRE---------------KSEREGGV-ISFQRQLVSQLLK 272 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~---------------~~~~~~~~-~~~~~~l~~~l~~ 272 (364)
....+++|.|++|.|||||++.++.... ....+.+.+....- ..+..... .....+++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~---- 99 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR---- 99 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh----
Confidence 3456899999999999999999987631 11222233221100 00000000 000111111
Q ss_pred CCCCCccChhhhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCChhhhh
Q 036738 273 LTDNRIWNEDDGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY-GSGSRIIITSRDEGLLK 337 (364)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtr~~~v~~ 337 (364)
........-+...-.+...+..++-++++|+.. |......+...+... ..+..||++|++.....
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 100111112222334666667777899999974 443333333222111 23668999999887665
No 212
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.001 Score=61.14 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=42.3
Q ss_pred CeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 295 KKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 295 ~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
++=++|+|+++ +......+...+.....++.+|++|++.. +... ......+.+.+++.+++.+.+..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 34455668885 44555555555543345677888888864 3222 12345789999999998877754
No 213
>PRK06696 uridine kinase; Validated
Probab=97.59 E-value=8.4e-05 Score=64.71 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=36.0
Q ss_pred cchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 193 IDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
|+..+++|.+.+.........+|+|.|.+|+||||||+.++..+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5566677766664423366789999999999999999999998754
No 214
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00027 Score=61.73 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCeEEEEEecCC---C---HHHHHHHhccCCCCCCCcEEEEEeCChhhhh
Q 036738 285 INILGSRLQHKKVLLVIDDVI---D---SKQLEYLAGKHGWYGSGSRIIITSRDEGLLK 337 (364)
Q Consensus 285 ~~~l~~~l~~~~~LlVlDdv~---~---~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~ 337 (364)
.-.+.+.|..++=||+||+-. | ...+..++..+. ..|+.||++|.+-....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhH
Confidence 345778888999999999752 2 233444444444 33889999999965433
No 215
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.58 E-value=0.0006 Score=60.24 Aligned_cols=27 Identities=33% Similarity=0.698 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999987653
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0009 Score=62.17 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++++|+|++|+||||++..++..+..+
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 345789999999999999999999876543
No 217
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.58 E-value=0.00064 Score=58.77 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 218
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00056 Score=58.76 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=33.4
Q ss_pred HHHHHhcCCCeEEEEEecCCCH-------HHHHHHhccCCCCCCCcEEEEEeCChhhhhhC
Q 036738 286 NILGSRLQHKKVLLVIDDVIDS-------KQLEYLAGKHGWYGSGSRIIITSRDEGLLKTN 339 (364)
Q Consensus 286 ~~l~~~l~~~~~LlVlDdv~~~-------~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~ 339 (364)
-++.+.|.-++-+||+|+..+. ..|+.+...-. ..+-.+|+.|++-.+...+
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~--~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK--ERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH--hcCceEEEEeCcHHHHHHH
Confidence 3466777777889999998532 23444433222 3466789999997766654
No 219
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.56 E-value=0.00069 Score=58.23 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=38.0
Q ss_pred HHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCChhhhhhCCCCceeeCCCCCHh
Q 036738 288 LGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY-GSGSRIIITSRDEGLLKTNRVDEVYKPNGLNYN 353 (364)
Q Consensus 288 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtr~~~v~~~~~~~~~~~l~~L~~~ 353 (364)
+...+..++-++++|+-. |....+.+...+... ..|..||++|++...... +.++.++.+..+
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~~ 204 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAAE 204 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccCC
Confidence 455556677899999874 333333332222111 246789999998765554 567777765543
No 220
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.56 E-value=0.00043 Score=60.86 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
+..|.++|..+= ....++.|.|++|+|||+||..++......-..++|+.
T Consensus 7 i~~LD~~l~GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 345666665544 56778999999999999999998765433334566665
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.56 E-value=0.00035 Score=59.36 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
++++.++|+.|+||||.+..++.++..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4689999999999999888888776555
No 222
>PRK04328 hypothetical protein; Provisional
Probab=97.56 E-value=0.00039 Score=61.60 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
..|.++|..+= ....++.|.|++|+|||+|+.+++......-..++|+.
T Consensus 10 ~~LD~lL~GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 35566665433 45678999999999999999998766333334456665
No 223
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0041 Score=56.81 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=48.9
Q ss_pred CCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 294 HKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 294 ~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+++=++|||+++ +......++..+....+++.+|++|.+++ ++.. ......+.+.+++.+++.+.+..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHH
Confidence 445588999997 45667777777766667888888777753 3333 23456889999999999888764
No 224
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.56 E-value=9.5e-05 Score=67.89 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=41.5
Q ss_pred ccccccchhHHHHHHhhcCCC---CCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 188 KKLVGIDSRLEELRFLMDKGP---SADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..++|.++.++++.+++.... ....++++|+|++|+||||||+.+++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 379999999999988775421 245678999999999999999999987644
No 225
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.54 E-value=0.00044 Score=69.56 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=69.0
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL 292 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (364)
+-+.|+|++|+|||++|+.++......|- .+. ...+.. ...+. ........+....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-----------~~~~~~----~~~g~------~~~~~~~~f~~a~ 241 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-----------GSDFVE----MFVGV------GASRVRDMFEQAK 241 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-----------hHHhHH----hhhcc------cHHHHHHHHHHHH
Confidence 34899999999999999999987654431 111 001110 00000 1111222233333
Q ss_pred CCCeEEEEEecCCCHH----------------HHHHHhccCCCCC--CCcEEEEEeCChhhhhh-----CCCCceeeCCC
Q 036738 293 QHKKVLLVIDDVIDSK----------------QLEYLAGKHGWYG--SGSRIIITSRDEGLLKT-----NRVDEVYKPNG 349 (364)
Q Consensus 293 ~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~iliTtr~~~v~~~-----~~~~~~~~l~~ 349 (364)
...+++|+||+++... .+..++..+..+. .+.-+|.||..++.++. -..+..+.++.
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 4578899999986431 2233333332222 23344446665543332 12456788988
Q ss_pred CCHhHHHHHHhhc
Q 036738 350 LNYNEALQLFNMK 362 (364)
Q Consensus 350 L~~~ea~~L~~~~ 362 (364)
.+.++-.++|..+
T Consensus 322 Pd~~~R~~Il~~~ 334 (644)
T PRK10733 322 PDVRGREQILKVH 334 (644)
T ss_pred CCHHHHHHHHHHH
Confidence 8888888887654
No 226
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00029 Score=61.61 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCC------CCCccChhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLT------DNRIWNEDD 283 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~ 283 (364)
....+++|+|++|+|||||++.+..-.... .+.+++....-..-..........+++....... +-+...-+.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 345689999999999999999999866654 3444443211000001123334445555443211 111222222
Q ss_pred hHHHHHHhcCCCeEEEEEecCCCH------HHHHHHhccCCCCCCCcEEEEEeCChhhhhhC
Q 036738 284 GINILGSRLQHKKVLLVIDDVIDS------KQLEYLAGKHGWYGSGSRIIITSRDEGLLKTN 339 (364)
Q Consensus 284 ~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~ 339 (364)
..-.+.+.+.-++-|+|.|+..+. .+.-.++..+.. ..|-..+..|.+-.+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 234477788889999999987532 122222222211 2356677788876666554
No 227
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.53 E-value=0.0003 Score=64.06 Aligned_cols=99 Identities=22% Similarity=0.222 Sum_probs=56.4
Q ss_pred HHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHH---HHHHhc
Q 036738 197 LEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQL---VSQLLK 272 (364)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~ 272 (364)
...|..+|. .+- ...+++-|+|++|+||||||.+++......-...+|+..-. .. +. ..+..+ +..+..
T Consensus 40 i~~LD~~Lg~GGl-p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~----~~-~~-~~a~~lGvd~~~l~v 112 (325)
T cd00983 40 SLSLDIALGIGGY-PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH----AL-DP-VYAKKLGVDLDNLLI 112 (325)
T ss_pred CHHHHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc----cH-HH-HHHHHcCCCHHHhee
Confidence 345566665 322 56678999999999999999999877655545566766211 11 11 111111 111111
Q ss_pred CCCCCccChhhhHHHHHHhc-CCCeEEEEEecCC
Q 036738 273 LTDNRIWNEDDGINILGSRL-QHKKVLLVIDDVI 305 (364)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 305 (364)
..+.+.++....+.... .+..-+||+|.+.
T Consensus 113 ---~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 113 ---SQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred ---cCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 12233444555554444 3467799999873
No 228
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00021 Score=69.87 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=42.9
Q ss_pred cccccchhHHHHHHhhcCC---CCCCceEEEEEccCccchHHHHHHHHHHhhccc
Q 036738 189 KLVGIDSRLEELRFLMDKG---PSADVRMIGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
.-+|.++..+.|.+++.-. .+-+.++++++||+|+|||++++.++..+...|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 4588998899998877532 236778999999999999999999999887664
No 229
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.53 E-value=8.9e-05 Score=59.55 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.3
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+|.+.|++|+||||+|+.++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 230
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.0021 Score=55.70 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=75.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccC-hhhhHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWN-EDDGINIL 288 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~l 288 (364)
.+.+++.++|+-|+|||.+++.+...+...--+.+.+. .... +...+...++..+.......... .+.....+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~-s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTL-SDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccch-hHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 44568999999999999999955554443322222332 2222 45555666666654422222211 12222223
Q ss_pred HHhc-CCCe-EEEEEecCCCH--H---HHHHHhccCCCCCCCcEEEEEeCCh-------hhhhhCC-CCce-eeCCCCCH
Q 036738 289 GSRL-QHKK-VLLVIDDVIDS--K---QLEYLAGKHGWYGSGSRIIITSRDE-------GLLKTNR-VDEV-YKPNGLNY 352 (364)
Q Consensus 289 ~~~l-~~~~-~LlVlDdv~~~--~---~~~~l~~~~~~~~~gs~iliTtr~~-------~v~~~~~-~~~~-~~l~~L~~ 352 (364)
.... ++++ ..+++||+.+. . .+..|...-...+..-+|+..-..+ .+....+ ...+ |+++|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3333 5566 99999999643 3 3444443332222222233322211 1111111 1224 89999999
Q ss_pred hHHHHHHhh
Q 036738 353 NEALQLFNM 361 (364)
Q Consensus 353 ~ea~~L~~~ 361 (364)
++...++..
T Consensus 203 ~~t~~yl~~ 211 (269)
T COG3267 203 AETGLYLRH 211 (269)
T ss_pred HHHHHHHHH
Confidence 988877754
No 231
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.53 E-value=0.00056 Score=61.04 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=64.7
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD 275 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (364)
.++.+..++.. ...++.|.|+.|+||||+++.+...+...-...+.+.+..+. .+.. + .++ .
T Consensus 68 ~~~~l~~~~~~----~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~-----~~~~----~-~q~----~ 129 (264)
T cd01129 68 NLEIFRKLLEK----PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY-----QIPG----I-NQV----Q 129 (264)
T ss_pred HHHHHHHHHhc----CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee-----cCCC----c-eEE----E
Confidence 34445555543 235799999999999999999887764421222222211111 0000 0 000 0
Q ss_pred CCccChhhhHHHHHHhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChh
Q 036738 276 NRIWNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEG 334 (364)
Q Consensus 276 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~ 334 (364)
............++..++..+-.++++++.+.+....+.... ..|..++-|.+-.+
T Consensus 130 v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa---~tGh~v~tTlHa~~ 185 (264)
T cd01129 130 VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAA---LTGHLVLSTLHTND 185 (264)
T ss_pred eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHH---HcCCcEEEEeccCC
Confidence 000011123566788888889999999999998766554432 23433444445443
No 232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00058 Score=57.95 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999964
No 233
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.0001 Score=59.05 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=30.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEe
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLA 247 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 247 (364)
..-+.|.|++|+|||||+..+++.++.. |...-|++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 3468999999999999999999998876 77665554
No 234
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00032 Score=58.74 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=65.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCC--c----------
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNR--I---------- 278 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~---------- 278 (364)
...+++|.|++|+|||||++.++..+.. +.+.+.+.... ..............+ .-+ ...+.. .
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~-~~~~~~~~~~~~~~i-~~~-~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGED-LTDLEDELPPLRRRI-GMV-FQDFALFPHLTVLENIALG 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEE-ccccchhHHHHhhcE-EEE-ecCCccCCCCCHHHheeec
Confidence 3458999999999999999999875432 34545443211 000000000000000 000 000000 0
Q ss_pred cChhh-hHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC-CC-CcEEEEEeCChhhhhhCCCCceeeC
Q 036738 279 WNEDD-GINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY-GS-GSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 279 ~~~~~-~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
.+..+ ..-.+...+..++-++++|+-. |....+.+...+... .. +..+|++|++....... +++++.+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l 174 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL-ADRVVVL 174 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 11112 2233556666777899999873 443333333222111 12 56899999987666543 2455544
No 235
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.51 E-value=0.00064 Score=58.28 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=35.7
Q ss_pred HHHhcCCCeEEEEEecCC---CHHHHH-HHhccCCCC-CC-CcEEEEEeCChhhhhhCCCCceeeCC
Q 036738 288 LGSRLQHKKVLLVIDDVI---DSKQLE-YLAGKHGWY-GS-GSRIIITSRDEGLLKTNRVDEVYKPN 348 (364)
Q Consensus 288 l~~~l~~~~~LlVlDdv~---~~~~~~-~l~~~~~~~-~~-gs~iliTtr~~~v~~~~~~~~~~~l~ 348 (364)
+...+..++-++++|+.. |..... .+...+... .. +..||++|++...... ++.++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 455667788899999984 333333 333222111 22 5679999998876654 45666654
No 236
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.51 E-value=0.0021 Score=57.58 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=25.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+++.++|++|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 456899999999999999999999877654
No 237
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.50 E-value=0.00031 Score=65.27 Aligned_cols=112 Identities=17% Similarity=0.190 Sum_probs=65.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR 291 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (364)
...+.|.|+.|+||||+++.++..+.......++.. .++. ... ... ...+...... ..+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-----Edp~-E~~--~~~-~~~~i~q~ev-g~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-----EDPI-EYV--HRN-KRSLINQREV-GLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-----cCCh-hhh--ccC-ccceEEcccc-CCCCcCHHHHHHHh
Confidence 357999999999999999999887765544444432 1111 000 000 0000000000 11122345667888
Q ss_pred cCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhh
Q 036738 292 LQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLL 336 (364)
Q Consensus 292 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~ 336 (364)
++..+-+|++|++.+.+......... ..|..++.|....+..
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 88999999999999888776544332 2455566666665443
No 238
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.49 E-value=0.00063 Score=57.19 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....++|.|++|+|||||++.++....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999997654
No 239
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.003 Score=54.16 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=42.9
Q ss_pred ccccccccccchhHHHHHH----hhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccccc
Q 036738 184 PKILKKLVGIDSRLEELRF----LMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEG 242 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~----~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 242 (364)
+.....++|.+.+.+.|.+ ++.. ....-|.+||.-|+|||+|.+++...+......
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3455678999988888755 3333 344568999999999999999999998877554
No 240
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.47 E-value=0.00045 Score=60.60 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=23.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|+|||||.+.++.-+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 345689999999999999999999743
No 241
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00029 Score=57.64 Aligned_cols=125 Identities=21% Similarity=0.229 Sum_probs=66.6
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR 291 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (364)
..+++|.|++|.|||||++.++..+.. ..+.+++.... ... . .... ....+.-. .+...-+...-.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~~-~-~~~~----~~~~i~~~--~qlS~G~~~r~~l~~~ 94 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IAK-L-PLEE----LRRRIGYV--PQLSGGQRQRVALARA 94 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-ccc-C-CHHH----HHhceEEE--eeCCHHHHHHHHHHHH
Confidence 458999999999999999999876543 35555554211 000 0 0111 10111000 0011112223335556
Q ss_pred cCCCeEEEEEecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 292 LQHKKVLLVIDDVI---DSKQLEYLAGKHGWY-GSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 292 l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
+...+-++++|+.. |......+...+... ..+..+|++|.+....... +++++.+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 66667899999984 443333332222111 2256899999987766653 2455544
No 242
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.46 E-value=0.00099 Score=57.48 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44589999999999999999998754
No 243
>PRK08118 topology modulation protein; Reviewed
Probab=97.45 E-value=0.00014 Score=60.18 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=26.3
Q ss_pred EEEEEccCccchHHHHHHHHHHhhc---ccccceEE
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISH---EFEGSSFL 246 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~---~f~~~~~~ 246 (364)
.|.|+|++|+||||||+.+++.+.- +++...|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5899999999999999999998653 35555543
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.45 E-value=0.00085 Score=60.51 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...+++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987653
No 245
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0015 Score=63.08 Aligned_cols=126 Identities=15% Similarity=0.240 Sum_probs=74.3
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR 291 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (364)
+.-|.+|||+|+|||-||+++++.-.-.| +...+ + +++....+. +.......+.+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isVKG-----P--------ELlNkYVGE------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVKG-----P--------ELLNKYVGE------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----EeecC-----H--------HHHHHHhhh------HHHHHHHHHHHh
Confidence 45589999999999999999999876553 33111 1 122221111 122222334444
Q ss_pred cCCCeEEEEEecCCCH-------------HHHHHHhccCCCC--CCCcEEEEEeCChhhhhh-----CCCCceeeCCCCC
Q 036738 292 LQHKKVLLVIDDVIDS-------------KQLEYLAGKHGWY--GSGSRIIITSRDEGLLKT-----NRVDEVYKPNGLN 351 (364)
Q Consensus 292 l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~ 351 (364)
-...+++|.||+++.. ..+..|+-.+.-. ..|.-||-.|--+++.+. -..+.++.|+.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 5678999999998642 1244444444322 235555555544443332 2346678888888
Q ss_pred HhHHHHHHhh
Q 036738 352 YNEALQLFNM 361 (364)
Q Consensus 352 ~~ea~~L~~~ 361 (364)
.+|-.++|..
T Consensus 681 ~~eR~~ILK~ 690 (802)
T KOG0733|consen 681 AEERVAILKT 690 (802)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 246
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.44 E-value=0.00062 Score=68.70 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....|+|+|.+|+|||||++.+...+.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445899999999999999999987543
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.0008 Score=57.60 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 446899999999999999999998654
No 248
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0015 Score=61.27 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999988764
No 249
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.42 E-value=0.00096 Score=65.10 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeCCC
Q 036738 285 INILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKPNG 349 (364)
Q Consensus 285 ~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l~~ 349 (364)
.-.|.+.|-.++-+|+||+-. |.+.+.+|-.-+.. -+| .+||+|+++..++.. +..+++++.
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V-~t~I~~ld~ 225 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV-ATHILELDR 225 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH-hhheEEecC
Confidence 345777778888899999875 44555555444432 245 799999999888775 345555543
No 250
>PRK06762 hypothetical protein; Provisional
Probab=97.41 E-value=0.00084 Score=55.46 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+.++.|.|++|+||||+|+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999877
No 251
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.41 E-value=0.00023 Score=56.91 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=29.4
Q ss_pred cccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 191 VGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 191 ~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+|.-..+.++.+.+..-. .....|.|+|++|+||+++|+.+++.-.
T Consensus 1 vG~S~~~~~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 345555555555443322 3344689999999999999998887543
No 252
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.41 E-value=0.0003 Score=59.22 Aligned_cols=33 Identities=24% Similarity=0.131 Sum_probs=25.1
Q ss_pred EEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 215 IGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
+.|.|++|+|||+|+..++......-..+.|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999998876543334455654
No 253
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.0014 Score=57.15 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34589999999999999999999754
No 254
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.41 E-value=0.0013 Score=56.94 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 255
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.40 E-value=0.0014 Score=57.63 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+..|+|++|+|||+|+..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987654
No 256
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.40 E-value=0.0014 Score=57.22 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=33.7
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
..|.++|..+- .....+.|.|++|+|||+|+..++......-..++|+.
T Consensus 7 ~~LD~~l~GGi-~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGI-PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCC-cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555554332 45678999999999999999988765333334556665
No 257
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.0012 Score=57.92 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44589999999999999999999754
No 258
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.40 E-value=0.0023 Score=57.59 Aligned_cols=173 Identities=17% Similarity=0.149 Sum_probs=94.2
Q ss_pred cccccccchhHHHHHHhhcCCC-CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccc-cCCHHHHHH
Q 036738 187 LKKLVGIDSRLEELRFLMDKGP-SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSER-EGGVISFQR 264 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~ 264 (364)
-..|+|-.++...+..++..-- .+....+.|+||.|.|||+|....... ...|.-...++...+.... .-.+..+..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 3468888888888877775310 033446899999999999988776655 3334444444433322221 113444444
Q ss_pred HHHHHHhcCCCCCccChhhhHHHHHHhc------CCCeEEEEEecCCCH------HHHHHHhccC-CCCCCCcEEEEEeC
Q 036738 265 QLVSQLLKLTDNRIWNEDDGINILGSRL------QHKKVLLVIDDVIDS------KQLEYLAGKH-GWYGSGSRIIITSR 331 (364)
Q Consensus 265 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~------~~~~~l~~~~-~~~~~gs~iliTtr 331 (364)
++..++... .....+..+....+-..| .+.++++|+|+++-. .-+..+...- ....|-|-|-+|||
T Consensus 102 ql~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 102 QLALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444443322 122223333333333333 235689999988632 1122222211 11235567778998
Q ss_pred Ch-------hhhhhCCCCceeeCCCCCHhHHHHHHhh
Q 036738 332 DE-------GLLKTNRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 332 ~~-------~v~~~~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
-. .|-.......++-++.++-++-..++++
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ 217 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRK 217 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHH
Confidence 74 2333333344677788888888877754
No 259
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.39 E-value=0.001 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEccCccchHHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
+++|+|++|+|||||++.++.-
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998743
No 260
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.38 E-value=0.0013 Score=58.49 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=28.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
....++.|.|++|+|||+||.+++.....+-..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678999999999999999998776433334566665
No 261
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00092 Score=65.48 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=73.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
...+.+.++|++|+|||.||++++......|-.... . .++.+.+ ..........+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~-------------~-~l~sk~v----------Gesek~ir~~F~ 329 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG-------------S-ELLSKWV----------GESEKNIRELFE 329 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC-------------H-HHhcccc----------chHHHHHHHHHH
Confidence 455688999999999999999999865544321110 0 1111110 011111223344
Q ss_pred HhcCCCeEEEEEecCCCH-------------HHHHHHhccCCCCC--CCcEEEEEeCChhhhhhC-----CCCceeeCCC
Q 036738 290 SRLQHKKVLLVIDDVIDS-------------KQLEYLAGKHGWYG--SGSRIIITSRDEGLLKTN-----RVDEVYKPNG 349 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~gs~iliTtr~~~v~~~~-----~~~~~~~l~~ 349 (364)
...+..+++|.+|+++.. .....++..+.... .+..||-+|-.+...... ..+..+.+++
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 444678999999998532 22333443332112 233344455444433321 2456889999
Q ss_pred CCHhHHHHHHhhc
Q 036738 350 LNYNEALQLFNMK 362 (364)
Q Consensus 350 L~~~ea~~L~~~~ 362 (364)
-+.++..++|..+
T Consensus 410 pd~~~r~~i~~~~ 422 (494)
T COG0464 410 PDLEERLEIFKIH 422 (494)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
No 262
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.38 E-value=0.0012 Score=57.29 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=86.2
Q ss_pred cccccccchhHH---HHHHhhcCCC---CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 187 LKKLVGIDSRLE---ELRFLMDKGP---SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 187 ~~~~~Gr~~~~~---~l~~~L~~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
.+..+|.+.... -|.+.|.... +..++.|..+|++|.|||.+|+++++.....| +. + ...
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~----v-----kat 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL----V-----KAT 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE----e-----chH
Confidence 345778765433 3455665532 26678899999999999999999998764432 21 0 011
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--------------HHHHHHhccCCC--CCCCc
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--------------KQLEYLAGKHGW--YGSGS 324 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~--~~~gs 324 (364)
.+ |.+.. +. ............-+..+|++.||+++.. +....|+-.+.. .+.|.
T Consensus 186 ~l---iGehV-Gd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 186 EL---IGEHV-GD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred HH---HHHHh-hh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 11 11111 10 0111222233333567999999988632 123334333321 23466
Q ss_pred EEEEEeCChhhhhhC---CCCceeeCCCCCHhHHHHHHhhcC
Q 036738 325 RIIITSRDEGLLKTN---RVDEVYKPNGLNYNEALQLFNMKA 363 (364)
Q Consensus 325 ~iliTtr~~~v~~~~---~~~~~~~l~~L~~~ea~~L~~~~a 363 (364)
..|-.|-++++++.. ....-++...-+++|-.+++..++
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 666666666665542 123456666778888888887654
No 263
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.38 E-value=0.0011 Score=56.36 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....++|.|++|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998765
No 264
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.37 E-value=0.00093 Score=59.26 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999754
No 265
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.37 E-value=0.001 Score=62.20 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
+.+|.+.|..+- ....++.|.|++|+|||||+..++..+...-..++|+.
T Consensus 68 i~eLD~vLgGGi-~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCc-cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 445666665433 45568999999999999999999987665434455654
No 266
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.37 E-value=0.0024 Score=54.85 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=35.0
Q ss_pred HHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 287 ILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 287 ~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
.+...+..++-++++|+.. |....+.+...+.....+..+|++|++...... +++++.+
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~--~d~v~~l 196 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDKILVM 196 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 3555556677899999984 444433333333222346788889988776544 3555444
No 267
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0031 Score=54.42 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=55.6
Q ss_pred ccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCH
Q 036738 190 LVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGV 259 (364)
Q Consensus 190 ~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 259 (364)
.=|.+-+.+++++..... .-+.++-|.++|++|+|||.||+++++.....| +..++
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvg--------- 222 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVG--------- 222 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeecc---------
Confidence 346666666666543321 115667789999999999999999998765543 33221
Q ss_pred HHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC
Q 036738 260 ISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID 306 (364)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 306 (364)
.++....++..+. ...+.++-.-.+.+.++.+|+++.
T Consensus 223 ----sefvqkylgegpr------mvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 223 ----SEFVQKYLGEGPR------MVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred ----HHHHHHHhccCcH------HHHHHHHHHhccCCcEEEeehhhh
Confidence 1223333333321 122333334467788999998863
No 268
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.0018 Score=57.43 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 345899999999999999999987654
No 269
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.002 Score=57.82 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44589999999999999999998754
No 270
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.35 E-value=0.00052 Score=63.85 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
..++-+.|||+.|.|||.|+-.+|+.+...-...+. ...++..+-..+.... .....+..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~H-------------Fh~Fm~~vh~~l~~~~-----~~~~~l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVH-------------FHEFMLDVHSRLHQLR-----GQDDPLPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccc-------------ccHHHHHHHHHHHHHh-----CCCccHHHHH
Confidence 456678999999999999999999876542111111 1222223322222211 1112234455
Q ss_pred HhcCCCeEEEEEecC--CCH---HHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 290 SRLQHKKVLLVIDDV--IDS---KQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv--~~~---~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
+.+.++..||.||++ .|. --+..+...+- ..|. +||+|-|
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN 166 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSN 166 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCC
Confidence 566777779999986 344 34555555443 3454 5555555
No 271
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.35 E-value=0.0032 Score=53.89 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+++|.|++|.|||||++.++....
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 3456899999999999999999987644
No 272
>PRK13695 putative NTPase; Provisional
Probab=97.35 E-value=0.00034 Score=58.34 Aligned_cols=25 Identities=48% Similarity=0.674 Sum_probs=21.8
Q ss_pred EEEEEccCccchHHHHHHHHHHhhc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.++|.|++|+|||||++.++..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999887653
No 273
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.35 E-value=0.0094 Score=56.51 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=25.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+.++.++|++|+||||++..++..++.+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 346799999999999999999999876544
No 274
>PRK10867 signal recognition particle protein; Provisional
Probab=97.35 E-value=0.01 Score=56.57 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+.++.++|++|+||||++..++..+...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 446789999999999999999998876554
No 275
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.35 E-value=0.002 Score=55.65 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 276
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.34 E-value=0.0025 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999754
No 277
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0016 Score=56.13 Aligned_cols=26 Identities=38% Similarity=0.627 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999754
No 278
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.33 E-value=0.00094 Score=58.02 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998643
No 279
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.33 E-value=0.0015 Score=56.78 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999998753
No 280
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.0012 Score=56.96 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999754
No 281
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.0019 Score=57.21 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345899999999999999999997653
No 282
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.33 E-value=0.0019 Score=56.76 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=23.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 45689999999999999999999764
No 283
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.33 E-value=0.001 Score=54.14 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=60.0
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHh----cCC-CCCccCh------
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLL----KLT-DNRIWNE------ 281 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~-~~~~~~~------ 281 (364)
..|-|++.+|.||||+|...+-+...+-..+.++.-+.... .. +-...++.+- .+. +.. .....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~-gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KY-GELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-cc-CHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 36788888899999999999887555423333333222211 11 3333333331 000 000 0000111
Q ss_pred -hhhHHHHHHhc-CCCeEEEEEecCCCH-----HHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 282 -DDGINILGSRL-QHKKVLLVIDDVIDS-----KQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 282 -~~~~~~l~~~l-~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
.+.....++.+ .+..-|||||++-.. -..+.+...+.....+..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11222333333 456679999998422 12233333333334677999999995
No 284
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.32 E-value=0.00058 Score=68.40 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=23.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+...++|+|++|+|||||++.+...+.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3456899999999999999999987543
No 285
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.32 E-value=0.0003 Score=58.76 Aligned_cols=38 Identities=29% Similarity=0.568 Sum_probs=31.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
..+.+|.+.|++|+||||+|+.++.++...+...+++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45568999999999999999999999887766666664
No 286
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.32 E-value=0.0013 Score=55.57 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=36.1
Q ss_pred hhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhc---cCCCCCCCcEEEEEeCChhhhhhC
Q 036738 283 DGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAG---KHGWYGSGSRIIITSRDEGLLKTN 339 (364)
Q Consensus 283 ~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~---~~~~~~~gs~iliTtr~~~v~~~~ 339 (364)
+..-+|.+.|.-++-++.||+.. |++-....+. .+. ..|...|+.|++-..+...
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA--~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA--EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH--HcCCeEEEEechhHHHHHh
Confidence 33456778888888899999985 4443333222 222 3577899999987666654
No 287
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.0018 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999998753
No 288
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.0017 Score=56.92 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45589999999999999999998754
No 289
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0014 Score=65.53 Aligned_cols=153 Identities=16% Similarity=0.249 Sum_probs=87.0
Q ss_pred ccccccccchhHHHH---HHhhcCCC------CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 186 ILKKLVGIDSRLEEL---RFLMDKGP------SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l---~~~L~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
...++.|.+...++| .++|.... ..-++=+.|+||+|+|||-||+++|..-. +-|+.. +.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~sv----SG-- 377 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSV----SG-- 377 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceeee----ch--
Confidence 456778887655544 55565422 25567789999999999999999997543 223331 10
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH-----------------HHHHHHhccCCC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS-----------------KQLEYLAGKHGW 319 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~ 319 (364)
++.++...+.. .....+.....-.+.++++.+|+++.. ..+.+++..+.-
T Consensus 378 -------SEFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 378 -------SEFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred -------HHHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 01122111110 111122233334667889999987531 235666665554
Q ss_pred CCCCcEEEE--EeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 320 YGSGSRIII--TSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 320 ~~~gs~ili--Ttr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+..+..||+ +|...++++. -..+..+.++.-+..+..++|.-|
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHH
Confidence 444433333 5555555443 124567778877777887777654
No 290
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.0019 Score=56.00 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 291
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.31 E-value=0.0024 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.0
Q ss_pred EEEEEccCccchHHHHHHHHHHhhcc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999887655
No 292
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.31 E-value=0.0017 Score=56.21 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999998754
No 293
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0032 Score=58.33 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=25.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.+.++++|+|+.|+||||++..++..+..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 456799999999999999999998776443
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.30 E-value=0.0047 Score=58.95 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+++.++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987765
No 295
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0038 Score=58.12 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=24.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....+++++|++|+||||++..++.+....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 345689999999999999999999875433
No 296
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.29 E-value=0.0014 Score=56.18 Aligned_cols=26 Identities=42% Similarity=0.677 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 297
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0022 Score=57.09 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 298
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.29 E-value=0.002 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=21.0
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999876
No 299
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0021 Score=59.40 Aligned_cols=99 Identities=23% Similarity=0.229 Sum_probs=56.8
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC-
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD- 275 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 275 (364)
..++...|..+- -...++.|-|.||||||||..+++.++.... .+.|+.. +. +.. -.+--...+.....
T Consensus 79 ~~EldRVLGGG~-V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-----EE--S~~-QiklRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-----EE--SLQ-QIKLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCCc-ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-----Cc--CHH-HHHHHHHHhCCCccc
Confidence 445556665433 3456889999999999999999999988776 6666651 11 122 22222333322111
Q ss_pred CCccChhhhHHHHHHhcCCCeEEEEEecCC
Q 036738 276 NRIWNEDDGINILGSRLQHKKVLLVIDDVI 305 (364)
Q Consensus 276 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 305 (364)
......-.+.+.+...-..++-|+|+|-+.
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 111111111222333335788999999873
No 300
>PRK08233 hypothetical protein; Provisional
Probab=97.28 E-value=0.0012 Score=55.36 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+|+|.|++|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 301
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.28 E-value=0.0019 Score=56.71 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999653
No 302
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.27 E-value=0.0023 Score=54.43 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999854
No 303
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.27 E-value=0.0009 Score=58.46 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=26.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
....++.|.|++|+||||||.+++.....+-..+.|+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 44558999999999999998777665433323445554
No 304
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.26 E-value=0.0018 Score=56.49 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45589999999999999999999754
No 305
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.0016 Score=57.10 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999754
No 306
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0012 Score=58.73 Aligned_cols=100 Identities=23% Similarity=0.167 Sum_probs=58.8
Q ss_pred HHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHH-HhcCCCCC
Q 036738 199 ELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQ-LLKLTDNR 277 (364)
Q Consensus 199 ~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~ 277 (364)
.|..+|..+- ...+++=|+|+.|+||||||.+++-..+..-...+|++-.+. + +. .-+.++... +.......
T Consensus 48 ~LD~~LGGGl-~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~----l-~p-~r~~~l~~~~~d~l~v~~ 120 (279)
T COG0468 48 ALDEALGGGL-PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHA----L-DP-ERAKQLGVDLLDNLLVSQ 120 (279)
T ss_pred hHHHHhcCCc-ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC----C-CH-HHHHHHHHhhhcceeEec
Confidence 3444555332 567788899999999999999998776666567888872222 2 22 233344444 22222223
Q ss_pred ccChhhhHH---HHHHhcCCCeEEEEEecCC
Q 036738 278 IWNEDDGIN---ILGSRLQHKKVLLVIDDVI 305 (364)
Q Consensus 278 ~~~~~~~~~---~l~~~l~~~~~LlVlDdv~ 305 (364)
..+.++... .+......+--|+|+|.+-
T Consensus 121 ~~~~e~q~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 121 PDTGEQQLEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred CCCHHHHHHHHHHHHHhccCCCCEEEEecCc
Confidence 333333333 3333333356799999884
No 307
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.25 E-value=0.0018 Score=63.40 Aligned_cols=134 Identities=14% Similarity=0.184 Sum_probs=84.2
Q ss_pred ccccccccchhHHHHHHhhcC--CCCCCceEEEEEccCccchHHHHHHHHHHhh-----cccccceEEeeccccccccCC
Q 036738 186 ILKKLVGIDSRLEELRFLMDK--GPSADVRMIGICGMGGLGKTTLARVIYDLIS-----HEFEGSSFLANVREKSEREGG 258 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~--~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~ 258 (364)
.+..+-+|+.+..+|..++.. ........+.|.|-+|+|||.....|.+.+. ..-+...|+..- ......
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN---gm~l~~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN---GLRLAS 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc---ceeecC
Confidence 566788999999999887754 1113445889999999999999999998654 122222233211 112225
Q ss_pred HHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc-----CCCeEEEEEecCCCH-----HHHHHHhccCCCC-CCCcEEE
Q 036738 259 VISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL-----QHKKVLLVIDDVIDS-----KQLEYLAGKHGWY-GSGSRII 327 (364)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~-~~gs~il 327 (364)
...+...|...+.+... .....++.|..+. ..+.++|++|+++.. +.+..| +.|. .++|+++
T Consensus 471 ~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLv 543 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLV 543 (767)
T ss_pred HHHHHHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceE
Confidence 67788888887755443 2334455555555 346789999998643 334444 3332 3577766
Q ss_pred EE
Q 036738 328 IT 329 (364)
Q Consensus 328 iT 329 (364)
|.
T Consensus 544 vi 545 (767)
T KOG1514|consen 544 VI 545 (767)
T ss_pred EE
Confidence 64
No 308
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.0014 Score=57.35 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 309
>PRK07667 uridine kinase; Provisional
Probab=97.25 E-value=0.0007 Score=57.51 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=30.3
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+.+.+.+.... ....+|+|.|++|+||||+|+.++..+..
T Consensus 4 ~~~~~~~~~~~-~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHK-ENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44445554433 44579999999999999999999988754
No 310
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.25 E-value=0.0008 Score=67.45 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=26.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEE
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFL 246 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 246 (364)
++...++|+|++|+|||||++.+...+ . ..+.+.+
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i 408 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKI 408 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEE
Confidence 345689999999999999999998866 3 2444443
No 311
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.25 E-value=0.0025 Score=56.62 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 445899999999999999999997654
No 312
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0028 Score=54.08 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCeEEEEEecCCC---HHHHHHHh---ccCCCCCCCcEEEEEeCChhhhhhCCCCc
Q 036738 285 INILGSRLQHKKVLLVIDDVID---SKQLEYLA---GKHGWYGSGSRIIITSRDEGLLKTNRVDE 343 (364)
Q Consensus 285 ~~~l~~~l~~~~~LlVlDdv~~---~~~~~~l~---~~~~~~~~gs~iliTtr~~~v~~~~~~~~ 343 (364)
...+.+.+--++-|.|||+.++ .+.++.+. ..+. .+++-+||.|+.+.++.....+.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCE
Confidence 3445555555677999999874 34443332 2232 45778999999999888875443
No 313
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.24 E-value=0.014 Score=55.54 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+.++.++|++|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999999999988764
No 314
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.24 E-value=0.0018 Score=55.84 Aligned_cols=26 Identities=38% Similarity=0.463 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 315
>PRK10908 cell division protein FtsE; Provisional
Probab=97.24 E-value=0.0026 Score=55.27 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 316
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.0033 Score=56.27 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 345899999999999999999998653
No 317
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.24 E-value=0.0024 Score=54.52 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 318
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.23 E-value=0.00062 Score=68.15 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....++|+|++|+|||||++.++..+.
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 446799999999999999999998543
No 319
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0034 Score=61.69 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=69.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
.+-|.|.|+.|+|||+|++++++.+... +....++.+ +.. ... .+.++++-+ ...+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C-s~l-~~~-~~e~iQk~l------------------~~vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC-STL-DGS-SLEKIQKFL------------------NNVFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec-hhc-cch-hHHHHHHHH------------------HHHHHH
Confidence 3468999999999999999999987643 222333331 111 111 122222211 233566
Q ss_pred hcCCCeEEEEEecCCCHH--------H-------HHHHh----ccCCCCCCCcE--EEEEeCChhhh-----hhCCCCce
Q 036738 291 RLQHKKVLLVIDDVIDSK--------Q-------LEYLA----GKHGWYGSGSR--IIITSRDEGLL-----KTNRVDEV 344 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~~--------~-------~~~l~----~~~~~~~~gs~--iliTtr~~~v~-----~~~~~~~~ 344 (364)
.+...+-++||||++... + +..++ ..+. ..+.+ +|-|.....-. ...-....
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIV 567 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEE
Confidence 678889999999986311 1 11111 1122 23333 44454443211 11123446
Q ss_pred eeCCCCCHhHHHHHHh
Q 036738 345 YKPNGLNYNEALQLFN 360 (364)
Q Consensus 345 ~~l~~L~~~ea~~L~~ 360 (364)
..++.+...+--++|+
T Consensus 568 ~~L~ap~~~~R~~IL~ 583 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILT 583 (952)
T ss_pred EecCCcchhHHHHHHH
Confidence 7888888888777765
No 320
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.22 E-value=0.00052 Score=57.95 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=60.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC-CCccChhhhHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD-NRIWNEDDGINILGS 290 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~ 290 (364)
...++|.|++|+|||||++.++..+... ...+.+....+........ . ++..... ..........+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNW-------V-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCE-------E-EEEEecCCCCCCCccCHHHHHHH
Confidence 4589999999999999999999876543 2222222111110000000 0 0000000 001111233456677
Q ss_pred hcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcE-EEEEeCChh
Q 036738 291 RLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSR-IIITSRDEG 334 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-iliTtr~~~ 334 (364)
.++..+-.++++++.+.+.+..+... ..|.. ++-|.+-.+
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~a~----~tGh~g~~~T~Ha~s 136 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQAM----NTGHPGGMTTIHANS 136 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHHHH----hcCCCCceeeecCCC
Confidence 77888889999999988876655433 24544 555555543
No 321
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.22 E-value=0.0022 Score=55.58 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 322
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.22 E-value=0.0011 Score=57.70 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=36.8
Q ss_pred HHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC--CCCcEEEEEeCChhhhhhCCCCceeeCC
Q 036738 287 ILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY--GSGSRIIITSRDEGLLKTNRVDEVYKPN 348 (364)
Q Consensus 287 ~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~--~~gs~iliTtr~~~v~~~~~~~~~~~l~ 348 (364)
.+...+..++-++++|+-. |....+.+...+... ..|..||++|++...... ++.++.+.
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~--~d~i~~l~ 211 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH--ADKVITLQ 211 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh--CCEEEEEe
Confidence 3556666677899999874 444444333322221 236689999999877653 56666653
No 323
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.22 E-value=0.00088 Score=64.38 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
+..|.+.|..+- ....++.|.|++|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi-~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGL-VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCc-cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456666666433 45668999999999999999999987654323456655
No 324
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.21 E-value=0.0024 Score=55.09 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999754
No 325
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.21 E-value=0.00053 Score=55.58 Aligned_cols=36 Identities=31% Similarity=0.267 Sum_probs=28.5
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
..+|-|.|.+|+||||||+.+.+++...-....++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468899999999999999999999877655455543
No 326
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.21 E-value=0.0018 Score=57.36 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....++|.|++|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 44589999999999999999999863
No 327
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.21 E-value=0.0033 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 455899999999999999999987654
No 328
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0027 Score=62.76 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=32.8
Q ss_pred HHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh
Q 036738 286 NILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 286 ~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~ 338 (364)
-.+...+..++-+|+||+-. |......+...+. ..+..||++|++......
T Consensus 164 v~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~--~~~~tiiivsHd~~~~~~ 217 (530)
T PRK15064 164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN--ERNSTMIIISHDRHFLNS 217 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH--hCCCeEEEEeCCHHHHHh
Confidence 34556666678899999974 4444444444333 235679999999776544
No 329
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.003 Score=56.81 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999998643
No 330
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.20 E-value=0.0014 Score=64.91 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+....++|+|++|+|||||++.++..+
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998744
No 331
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.20 E-value=0.0034 Score=53.78 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 332
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.002 Score=56.72 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 333
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0068 Score=58.61 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=24.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....+++|+|++|+||||++..++..+..+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999998775443
No 334
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.19 E-value=0.0011 Score=63.89 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=37.3
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
-+..|..+|..+- ....++.|.|++|+|||||+..++......-..+.|+.
T Consensus 79 Gi~~LD~vLgGGi-~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGGI-VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCCc-cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3556677776543 55678999999999999999999887655433455665
No 335
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.004 Score=55.19 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345899999999999999999997653
No 336
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.19 E-value=0.0043 Score=54.45 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 44589999999999999999999754
No 337
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.19 E-value=0.005 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|+|++|.|||||++.++..+.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 445899999999999999999997653
No 338
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.19 E-value=0.0025 Score=55.49 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445899999999999999999997543
No 339
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.18 E-value=0.0018 Score=59.03 Aligned_cols=27 Identities=30% Similarity=0.568 Sum_probs=23.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|.|||||.+.++..+
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999753
No 340
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.18 E-value=0.002 Score=55.60 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 341
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.18 E-value=0.00087 Score=66.93 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+....++|+|++|+|||||++.+...+.
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3456899999999999999999987543
No 342
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.0026 Score=54.75 Aligned_cols=23 Identities=48% Similarity=0.745 Sum_probs=21.0
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+++|.|++|+|||||++.++..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999643
No 343
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.17 E-value=0.0019 Score=56.95 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999998643
No 344
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00087 Score=57.06 Aligned_cols=30 Identities=40% Similarity=0.597 Sum_probs=26.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+.+|+|.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 345799999999999999999999988755
No 345
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.17 E-value=0.00048 Score=66.78 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=42.3
Q ss_pred cccccccchhHHHHHHhh----cCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 187 LKKLVGIDSRLEELRFLM----DKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L----~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++|.+..++.|.+.| .... ...+++.++||+|+||||||+.+++.+...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 346899999999998877 2222 556799999999999999999999866553
No 346
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0019 Score=56.90 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 347
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.16 E-value=0.0027 Score=57.56 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=24.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....++++.|++|.|||||.+.++..+..
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 34568999999999999999999986554
No 348
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.16 E-value=0.0021 Score=57.50 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=32.2
Q ss_pred HHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc
Q 036738 199 ELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE 241 (364)
Q Consensus 199 ~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 241 (364)
..++++.. .+..++.|.|.+|+|||||+..+...+.....
T Consensus 94 ~~r~~~~~---~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 94 RNRARFAA---RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred HHHHHHHh---cCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 44555554 56889999999999999999999998876643
No 349
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.16 E-value=0.0038 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999997543
No 350
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.16 E-value=0.00036 Score=54.67 Aligned_cols=22 Identities=45% Similarity=0.779 Sum_probs=20.5
Q ss_pred EEEEccCccchHHHHHHHHHHh
Q 036738 215 IGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
|+|.|.+|+||||||+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 351
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.16 E-value=0.0037 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=21.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..++..|+|.+|+|||||...++-.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhh
Confidence 4578899999999999999998853
No 352
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0016 Score=54.37 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=21.2
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.|.|.|++|+||||+|+.++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999984
No 353
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.16 E-value=0.0033 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.7
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
++.|.|.+|+||||||+.++..+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999875
No 354
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.003 Score=56.75 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 445899999999999999999997654
No 355
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.14 E-value=0.00093 Score=62.19 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=54.5
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccc-eEEeeccccccccCCHHHHHH--HHHHHHhcCCCCCccChhhhHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGS-SFLANVREKSEREGGVISFQR--QLVSQLLKLTDNRIWNEDDGINIL 288 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~l 288 (364)
...|.|+|+.|+||||+++.+++.+....+.. ..+. .....+ . ....... ....+ . ....+.......+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt-~EdpiE-~-~~~~~~~~~~~v~Q----~-~v~~~~~~~~~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILT-YEAPIE-F-VYDEIETISASVCQ----S-EIPRHLNNFAAGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEE-eCCCce-E-eccccccccceeee----e-eccccccCHHHHH
Confidence 46899999999999999999998875443322 1111 110111 0 0000000 00001 0 0011122344567
Q ss_pred HHhcCCCeEEEEEecCCCHHHHHHHhc
Q 036738 289 GSRLQHKKVLLVIDDVIDSKQLEYLAG 315 (364)
Q Consensus 289 ~~~l~~~~~LlVlDdv~~~~~~~~l~~ 315 (364)
+..++..+..+++.++.+.+..+....
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHHHH
Confidence 778888999999999999988765443
No 356
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.14 E-value=0.0049 Score=54.31 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|.|||||.+.++...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 357
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.14 E-value=0.0032 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999754
No 358
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.13 E-value=0.0011 Score=67.84 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....++|+|++|+|||||++.++..+.
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999987543
No 359
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.13 E-value=0.00089 Score=57.77 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.9
Q ss_pred ceEEEEEccCccchHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
.+.+.|+|++|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999884
No 360
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.13 E-value=0.002 Score=56.34 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999754
No 361
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.13 E-value=0.0024 Score=56.84 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 362
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.13 E-value=0.00044 Score=58.78 Aligned_cols=26 Identities=42% Similarity=0.738 Sum_probs=23.6
Q ss_pred EEEEEccCccchHHHHHHHHHHhhcc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
+|+|.|++|+||||||+.++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999988753
No 363
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.13 E-value=0.0032 Score=54.51 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....++|.|++|+|||||++.++...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999999754
No 364
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.13 E-value=0.0031 Score=58.21 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=36.0
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHH
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..++|+...+..+.+.+..-. .....|.|+|++|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-PLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 458898888888877665433 33346899999999999999988753
No 365
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.12 E-value=0.0024 Score=55.53 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 366
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0038 Score=55.43 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345899999999999999999997654
No 367
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.12 E-value=0.0066 Score=56.84 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=31.7
Q ss_pred cchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHH-HHHHH
Q 036738 193 IDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLA-RVIYD 234 (364)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~ 234 (364)
|....++|..||.. .....|.|.||-|+||+.|. .++.+
T Consensus 1 R~e~~~~L~~wL~e---~~~TFIvV~GPrGSGK~elV~d~~L~ 40 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE---NPNTFIVVQGPRGSGKRELVMDHVLK 40 (431)
T ss_pred CchHHHHHHHHHhc---CCCeEEEEECCCCCCccHHHHHHHHh
Confidence 55678899999987 44568999999999999998 55554
No 368
>PTZ00494 tuzin-like protein; Provisional
Probab=97.12 E-value=0.0094 Score=55.95 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=97.4
Q ss_pred cccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHH
Q 036738 183 KPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 183 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
.+.....++.|+.+-..+++.|.+....+++++.+.|.-|+||++|++....+-. -..+|+. ..... ..
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~paV~VD----VRg~E----Dt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---VALVHVD----VGGTE----DT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---CCeEEEE----ecCCc----ch
Confidence 3556778999999999999999887778999999999999999999998876432 2355665 22222 23
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHh-------cCCCeEEEEEe--cCCCHHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSR-------LQHKKVLLVID--DVIDSKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-------l~~~~~LlVlD--dv~~~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
++.+...+... ......++++.+.+. ..++.-|||+- +-.+......-.-.+.....-|+|++----+
T Consensus 435 LrsVVKALgV~---nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 435 LRSVVRALGVS---NVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMK 511 (664)
T ss_pred HHHHHHHhCCC---ChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHh
Confidence 34455554333 222333333333222 34455556543 3333322211111122224568888854433
Q ss_pred hhhhh---CCCCceeeCCCCCHhHHHHHHh
Q 036738 334 GLLKT---NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 334 ~v~~~---~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
.+... +.....|.+++|+.++|.+.-.
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~Ytq 541 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAE 541 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHh
Confidence 22211 1234578999999999987654
No 369
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.12 E-value=0.0028 Score=55.42 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999997543
No 370
>PRK07261 topology modulation protein; Provisional
Probab=97.11 E-value=0.0004 Score=57.75 Aligned_cols=24 Identities=42% Similarity=0.564 Sum_probs=21.3
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.|.|+|++|+||||||+.++..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999987753
No 371
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.0046 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34589999999999999999999653
No 372
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.11 E-value=0.0032 Score=54.74 Aligned_cols=26 Identities=46% Similarity=0.713 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 373
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.11 E-value=0.0012 Score=56.35 Aligned_cols=24 Identities=33% Similarity=0.230 Sum_probs=21.6
Q ss_pred eEEEEEccCccchHHHHHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+++|.|++|.|||||++.++..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 689999999999999999998643
No 374
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.0045 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44589999999999999999998764
No 375
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.0039 Score=55.89 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998754
No 376
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=97.10 E-value=0.002 Score=50.15 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=53.6
Q ss_pred cEEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecc
Q 036738 15 DVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKN 78 (364)
Q Consensus 15 dvfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~ 78 (364)
.|||.|+ +| ..+++.+...|+..|+.+..-......|..+.+.+++.+.+++..|+++||+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 4899997 66 3899999999998899977666566889999999999999999999999984
No 377
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0039 Score=55.80 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34589999999999999999999653
No 378
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.09 E-value=0.0077 Score=59.60 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=40.0
Q ss_pred cccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 185 KILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.....++|....+.++.+.+..-. .....|.|+|++|+|||++|+.+++..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-RSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345678999998888888765433 334467899999999999999998764
No 379
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0036 Score=56.64 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999974
No 380
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.0069 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 44689999999999999999999643
No 381
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.08 E-value=0.002 Score=65.92 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=23.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|+|++|+|||||++.+...+.
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3456899999999999999999987554
No 382
>PTZ00301 uridine kinase; Provisional
Probab=97.08 E-value=0.00052 Score=58.89 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..+|+|.|++|+||||||+.+..++..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 468999999999999999999887643
No 383
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.0043 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999853
No 384
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0021 Score=57.84 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999999754
No 385
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.013 Score=55.54 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++++|++|+||||++..++.+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999888753
No 386
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.07 E-value=0.005 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999875
No 387
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0032 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999753
No 388
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0042 Score=55.53 Aligned_cols=27 Identities=37% Similarity=0.660 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 445899999999999999999998653
No 389
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0033 Score=58.45 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 390
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.0046 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 391
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.07 E-value=0.0023 Score=62.86 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=36.2
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEe
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLA 247 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 247 (364)
-+..|.+.|..+- ....++.|.|.+|+|||+|+..++.....+ -..+.|+.
T Consensus 16 GI~~LD~~l~GG~-p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 16 GIEGFDDITHGGL-PKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred CchhHHHhhcCCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3556666665433 556799999999999999999998764443 23455665
No 392
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.0043 Score=54.30 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|.|||||.+.++..+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999997643
No 393
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0038 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 394
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.06 E-value=0.00045 Score=61.99 Aligned_cols=121 Identities=19% Similarity=0.184 Sum_probs=68.1
Q ss_pred hhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCC
Q 036738 195 SRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLT 274 (364)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 274 (364)
...+.+.++|...- .....+.|.|+.|+||||++..++..+... ...+... .+ .... .+ ....
T Consensus 111 ~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~i--Ed-~~E~-~l-----------~~~~ 173 (270)
T PF00437_consen 111 SIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTI--ED-PPEL-RL-----------PGPN 173 (270)
T ss_dssp HCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEE--ES-SS-S--------------SCSS
T ss_pred hhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhcccc-ccceEEe--cc-ccce-ee-----------cccc
Confidence 33445555554321 234689999999999999999999877665 2222221 11 1000 00 0000
Q ss_pred C--CCc-cChhhhHHHHHHhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEE-EEEeCChhhh
Q 036738 275 D--NRI-WNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRI-IITSRDEGLL 336 (364)
Q Consensus 275 ~--~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~i-liTtr~~~v~ 336 (364)
. ... .......+.+...|+..+-.++++++.+.+....+... ..|..+ +-|.+..++.
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~s~~ 235 (270)
T PF00437_consen 174 QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHANSAE 235 (270)
T ss_dssp EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-SSHH
T ss_pred eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecCCHH
Confidence 0 001 13334466788889988999999999988888775444 356666 6666665443
No 395
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.06 E-value=0.0049 Score=62.27 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=33.1
Q ss_pred HHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhC
Q 036738 286 NILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTN 339 (364)
Q Consensus 286 ~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~ 339 (364)
-.|...+-.++-+|+||+-. |......+...+.... ..||++|++...+...
T Consensus 165 v~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 165 AALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNM 219 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHh
Confidence 34566666778899999874 4444444444333222 3799999998766553
No 396
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.06 E-value=0.0006 Score=58.38 Aligned_cols=22 Identities=36% Similarity=0.280 Sum_probs=20.5
Q ss_pred eEEEEEccCccchHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
.+++|+|++|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 397
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.06 E-value=0.0022 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.|.|.|++|+||||+|+.+++++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998763
No 398
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.06 E-value=0.0051 Score=54.47 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 399
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.06 E-value=0.0024 Score=59.61 Aligned_cols=110 Identities=18% Similarity=0.123 Sum_probs=61.2
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccc-cceEE-eeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFE-GSSFL-ANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
..+.|.|+.|+||||+++.+++.+....+ ..+.. ....+.... ....+.. ..+ . .-..+.......++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--~~~~~~~--~~q----~-evg~~~~~~~~~l~~ 220 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--SPDDLLP--PAQ----S-QIGRDVDSFANGIRL 220 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--CCceeec--ccc----c-ccCCCccCHHHHHHH
Confidence 36889999999999999999887654332 22222 111010000 0000000 000 0 001122234567888
Q ss_pred hcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChh
Q 036738 291 RLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEG 334 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~ 334 (364)
.++..+-.|+++++.+.+.++...... ..|..++-|.+..+
T Consensus 221 aLR~~PD~I~vGEiRd~et~~~al~aa---~TGH~v~tTlHa~s 261 (372)
T TIGR02525 221 ALRRAPKIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLHVKS 261 (372)
T ss_pred hhccCCCEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeCCCC
Confidence 889999999999999998887644332 23544444545443
No 400
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.06 E-value=0.002 Score=61.03 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=32.5
Q ss_pred HHHHHhcCCCeEEEEEecCCC---HHH---H-HHHhccCCCCCCCcEEEEEeCChhhhhhC
Q 036738 286 NILGSRLQHKKVLLVIDDVID---SKQ---L-EYLAGKHGWYGSGSRIIITSRDEGLLKTN 339 (364)
Q Consensus 286 ~~l~~~l~~~~~LlVlDdv~~---~~~---~-~~l~~~~~~~~~gs~iliTtr~~~v~~~~ 339 (364)
-.|.+.+-+.+.|+|||+-.. .+. + +.+.. .. ..|+.+|+.|+.+.++...
T Consensus 481 IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~-~k--~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA-AK--ARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHH-HH--HcCCEEEEEecCHHHHhhc
Confidence 457788889999999997642 111 1 12222 11 3577888888877776664
No 401
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.05 E-value=0.0029 Score=63.23 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|+|++|+|||||++.++..+.
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999999997543
No 402
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.05 E-value=0.001 Score=61.59 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998744
No 403
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.05 E-value=0.0014 Score=65.86 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=24.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+....++|+|++|+|||||++.++..+..
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34568999999999999999999876543
No 404
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0029 Score=57.04 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|.|||||++.++...
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 405
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.04 E-value=0.0044 Score=61.60 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+++|+|++|+|||||.+.++..+.
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445899999999999999999998654
No 406
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.04 E-value=0.0013 Score=67.23 Aligned_cols=27 Identities=37% Similarity=0.620 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....++|+|++|+|||||++.++..+.
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999987543
No 407
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.04 E-value=0.0046 Score=54.93 Aligned_cols=28 Identities=21% Similarity=0.558 Sum_probs=23.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+++|+|++|+|||||++.++..+.
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3456899999999999999999997654
No 408
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0039 Score=60.44 Aligned_cols=27 Identities=33% Similarity=0.641 Sum_probs=23.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 445899999999999999999998654
No 409
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.04 E-value=0.00062 Score=58.61 Aligned_cols=27 Identities=44% Similarity=0.677 Sum_probs=24.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+|+|.|++|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999877
No 410
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0041 Score=56.15 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 345899999999999999999997653
No 411
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0039 Score=62.96 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=33.0
Q ss_pred HHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhC
Q 036738 287 ILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTN 339 (364)
Q Consensus 287 ~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~ 339 (364)
.|...|-.++-+|+||+-. |......+...+... +..||++|++...+...
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~ 212 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPI 212 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHh
Confidence 4566667778899999874 444444444433322 34799999998766553
No 412
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.03 E-value=0.0081 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|+|||||++.++...
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345689999999999999999998754
No 413
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0032 Score=56.82 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999754
No 414
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0031 Score=56.52 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|.|||||++.++..+
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 415
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0062 Score=57.30 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...++.++|++|+||||++..++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999754
No 416
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0055 Score=54.28 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999999643
No 417
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.03 E-value=0.00069 Score=56.22 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=27.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh-cccccceEE
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS-HEFEGSSFL 246 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~ 246 (364)
..++.+.||.|+|||.||+.+++.+. ......+-+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~ 38 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI 38 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH
Confidence 45788999999999999999999887 443333333
No 418
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.0062 Score=54.34 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+++|.|++|+|||||++.++....
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 3456899999999999999999997654
No 419
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.02 E-value=0.00059 Score=47.37 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
++.|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 420
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.02 E-value=0.0054 Score=54.99 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998643
No 421
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.02 E-value=0.0036 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 422
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.02 E-value=0.0043 Score=53.54 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=22.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999754
No 423
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.02 E-value=0.0053 Score=56.06 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999754
No 424
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.02 E-value=0.0032 Score=61.09 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=64.3
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD 275 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (364)
.++.+..++.. ...++.|.|+.|+||||++..+.+.+...-...+.+..-.+.. .... .+. .
T Consensus 230 ~~~~l~~~~~~----~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~--~~~~--------~q~----~ 291 (486)
T TIGR02533 230 LLSRFERLIRR----PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ--IEGI--------GQI----Q 291 (486)
T ss_pred HHHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee--cCCC--------ceE----E
Confidence 34455555543 3358999999999999999988777643322222222100000 0000 000 0
Q ss_pred CCccChhhhHHHHHHhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 276 NRIWNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 276 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
............++..|+..+-.|++.++.+.+......... ..|..|+-|-+..
T Consensus 292 v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa---~tGHlvlsTlHa~ 346 (486)
T TIGR02533 292 VNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQAS---LTGHLVLSTLHTN 346 (486)
T ss_pred EccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHH---HhCCcEEEEECCC
Confidence 000001123467888889999999999999998776654432 1343344444443
No 425
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.02 E-value=0.0045 Score=54.98 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999997644
No 426
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.01 E-value=0.0025 Score=63.03 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=23.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+....++|+|++|+|||||++.+...+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556899999999999999999986543
No 427
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.00 E-value=0.0054 Score=56.63 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=32.2
Q ss_pred ccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 190 LVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 190 ~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
++|....+..+.+.+..-. .....|.|+|++|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a-~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-PLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-CCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 3566666666665554322 233458999999999999999987653
No 428
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.00 E-value=0.00097 Score=57.05 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=58.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh-hcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC--CCccChhhhHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI-SHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD--NRIWNEDDGINI 287 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~ 287 (364)
...++.|.|++|.||||+.+.++.-. ..+ .+++++.... .......+...+..... ............
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~--~G~~vpa~~~-------~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~ 98 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQ--IGCFVPAEYA-------TLPIFNRLLSRLSNDDSMERNLSTFASEMSE 98 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHH--cCCCcchhhc-------CccChhheeEecCCccccchhhhHHHHHHHH
Confidence 34789999999999999999887531 111 2333321110 01112222222211110 001111111112
Q ss_pred HHHh--cCCCeEEEEEecCC---CHHH----HHHHhccCCCCCCCcEEEEEeCChhhhhhC
Q 036738 288 LGSR--LQHKKVLLVIDDVI---DSKQ----LEYLAGKHGWYGSGSRIIITSRDEGLLKTN 339 (364)
Q Consensus 288 l~~~--l~~~~~LlVlDdv~---~~~~----~~~l~~~~~~~~~gs~iliTtr~~~v~~~~ 339 (364)
+... +..++-|+++|+.. +..+ ...+...+. ..++.+|++|++.++....
T Consensus 99 ~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 99 TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 2222 23567899999983 3322 122222222 2478999999998877654
No 429
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.99 E-value=0.00072 Score=58.13 Aligned_cols=28 Identities=46% Similarity=0.671 Sum_probs=24.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+...+++|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998765
No 430
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.99 E-value=0.00071 Score=56.21 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....|.|+|++|+||||+|+.++.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999874
No 431
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0056 Score=53.29 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=35.4
Q ss_pred cccccchhHHHHHHhhcC-----CC-----CCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 189 KLVGIDSRLEELRFLMDK-----GP-----SADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~-----~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..=|-..+++.|++.... +. -+.++-|.++|++|.|||-+|++++++...
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 344667777777664322 10 145667899999999999999999987643
No 432
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.99 E-value=0.0035 Score=57.68 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc------ccceEEe
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF------EGSSFLA 247 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 247 (364)
..+..+|..+- ....++-|+|++|+|||+||..++....... ..++|+.
T Consensus 89 ~~lD~~l~GGi-~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGI-ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCc-cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 45555565433 4567889999999999999999987643211 2466666
No 433
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.0062 Score=54.28 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|+|++|+|||||++.++....
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345899999999999999999997543
No 434
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.99 E-value=0.0033 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.2
Q ss_pred EEEEccCccchHHHHHHHHHHhhcc
Q 036738 215 IGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
|.+.|++|+||||+|+.++..+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999887543
No 435
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.98 E-value=0.00042 Score=58.44 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=18.7
Q ss_pred EEEEEccCccchHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~ 234 (364)
++.|+|++|.||||+++.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999983
No 436
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.98 E-value=0.0046 Score=54.33 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999743
No 437
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.0045 Score=58.12 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 438
>PRK03839 putative kinase; Provisional
Probab=96.97 E-value=0.00067 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=22.3
Q ss_pred EEEEEccCccchHHHHHHHHHHhhc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.|.|.|++|+||||+++.+++++.-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998743
No 439
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.97 E-value=0.0027 Score=55.25 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 199 ELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 199 ~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
.|.+.|..+- ....++.|.|.+|+|||++|..++.....+=..++|+.
T Consensus 4 ~LD~~l~gGi-~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGF-PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4555554432 45678999999999999999999876433323445554
No 440
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.97 E-value=0.0088 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.0
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
++.|.|++|+||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999998765
No 441
>PRK05973 replicative DNA helicase; Provisional
Probab=96.97 E-value=0.0054 Score=53.52 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=28.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
....++.|.|.+|+|||+++.+++.....+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568999999999999999999876544433455554
No 442
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.96 E-value=0.0022 Score=56.93 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...|.++|..+- ....+.=|+|++|+|||+||..++-..
T Consensus 24 ~~~lD~~L~GGi-~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 24 CKSLDELLGGGI-PTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp SHHHHHHTTSSE-ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CHHHHHhhCCCC-CCCcEEEEEEecccccchHHHHHHHHh
Confidence 345666775433 445688899999999999999887553
No 443
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.96 E-value=0.0021 Score=65.93 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+....++|+|++|+|||||++.++..+.
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999999987543
No 444
>PRK06547 hypothetical protein; Provisional
Probab=96.96 E-value=0.0013 Score=54.56 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+|+|.|++|+||||||+.++..+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5677899999999999999999998743
No 445
>PRK13409 putative ATPase RIL; Provisional
Probab=96.96 E-value=0.0045 Score=61.79 Aligned_cols=27 Identities=37% Similarity=0.730 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~ 390 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLK 390 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445899999999999999999997654
No 446
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.00088 Score=58.17 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.3
Q ss_pred CceEEEEEccCccchHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
..+++.|+|++|.||||+.+.++.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457899999999999999998874
No 447
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.95 E-value=0.00052 Score=52.24 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.1
Q ss_pred EEEEccCccchHHHHHHHHHHhhccc
Q 036738 215 IGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
|-|+|++|+|||+||..++..+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998766543
No 448
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.0091 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 445899999999999999999987543
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.95 E-value=0.003 Score=61.52 Aligned_cols=129 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc-ccceEEeeccccccccCCHHHHHHHHHHHHhcCCC
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF-EGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD 275 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (364)
+..|.++|..+= ...+++.|.|++|+||||||.+++..-..++ ..++|+. ..+....+...+..+.-.+.....
T Consensus 7 I~gLD~il~GGl-p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs----~eE~~~~l~~~~~~~G~~~~~~~~ 81 (484)
T TIGR02655 7 IEGFDDISHGGL-PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT----FEESPQDIIKNARSFGWDLQKLVD 81 (484)
T ss_pred chhHHHhcCCCC-CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE----EecCHHHHHHHHHHcCCCHHHHhh
Q ss_pred CCc------------------cChhhhHHHHHHhc-CCCeEEEEEecCCCHH-----------HHHHHhccCCCCCCCcE
Q 036738 276 NRI------------------WNEDDGINILGSRL-QHKKVLLVIDDVIDSK-----------QLEYLAGKHGWYGSGSR 325 (364)
Q Consensus 276 ~~~------------------~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~gs~ 325 (364)
... .+.......+...+ .+++-.+|||-+.... .+..+...+. ..|+.
T Consensus 82 ~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~--~~g~T 159 (484)
T TIGR02655 82 EGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLK--QIGVT 159 (484)
T ss_pred cCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHH--HCCCE
Q ss_pred EEEEeCC
Q 036738 326 IIITSRD 332 (364)
Q Consensus 326 iliTtr~ 332 (364)
+|+||.+
T Consensus 160 vLLtsh~ 166 (484)
T TIGR02655 160 TVMTTER 166 (484)
T ss_pred EEEEecC
No 450
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.94 E-value=0.0025 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=21.0
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+.|.|+|.||+||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998766
No 451
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.94 E-value=0.0043 Score=56.85 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc------cccceEEe
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE------FEGSSFLA 247 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 247 (364)
..+..+|..+- ....++-|+|++|+|||||+..++...... -..++|+.
T Consensus 82 ~~lD~~l~GGi-~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGI-ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 44556665433 456788999999999999999998765321 12466766
No 452
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.93 E-value=0.0024 Score=58.98 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=68.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc----cc---cceEEee-----c--cccccccCCHHHHHHHHHHHHhc---
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE----FE---GSSFLAN-----V--REKSEREGGVISFQRQLVSQLLK--- 272 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~---~~~~~~~-----~--~~~~~~~~~~~~~~~~l~~~l~~--- 272 (364)
+..-+++|+|.+|+||||+.+++....... |. +.+-+.. + +.....+ +-..++.++.+..+.
T Consensus 407 kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f-~~~tilehl~s~tGD~~~ 485 (593)
T COG2401 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEF-GEVTILEHLRSKTGDLNA 485 (593)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCccccccc-CchhHHHHHhhccCchhH
Confidence 445689999999999999999998754322 11 1111110 0 0111111 112333333322211
Q ss_pred ----------CCC-------CCccChhhhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC--CCCcEEEEEe
Q 036738 273 ----------LTD-------NRIWNEDDGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY--GSGSRIIITS 330 (364)
Q Consensus 273 ----------~~~-------~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~--~~gs~iliTt 330 (364)
... .+..+-..-...|...+.++.-++++|... |......+...+... .-|..+++.|
T Consensus 486 AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvT 565 (593)
T COG2401 486 AVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565 (593)
T ss_pred HHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 100 111111222345778888898899999874 222221121111111 2477888888
Q ss_pred CChhhhhhCCCCc
Q 036738 331 RDEGLLKTNRVDE 343 (364)
Q Consensus 331 r~~~v~~~~~~~~ 343 (364)
+++++.+.+..+.
T Consensus 566 hrpEv~~AL~PD~ 578 (593)
T COG2401 566 HRPEVGNALRPDT 578 (593)
T ss_pred cCHHHHhccCCce
Confidence 8898888765443
No 453
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.93 E-value=0.0033 Score=57.56 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=62.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR 291 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (364)
...++|.|+.|+|||||++.++..+.... ..+.+....+.......... +...........-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHH
Confidence 45799999999999999999987765432 22333211111100000000 0000000011112234556777
Q ss_pred cCCCeEEEEEecCCCHHHHHHHhccCCCCCCCc-EEEEEeCChhhhh
Q 036738 292 LQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGS-RIIITSRDEGLLK 337 (364)
Q Consensus 292 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs-~iliTtr~~~v~~ 337 (364)
++..+-.|++|++.+.+.++.+... . .|. .++.|++..+...
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~~~~ 257 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGSPEE 257 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCCHHH
Confidence 8888889999999987766654433 2 233 3577887765443
No 454
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.0044 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|.|||||++.++..+
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 455
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.93 E-value=0.0024 Score=63.96 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+....++|+|++|+|||||++.++..+
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 345689999999999999999998654
No 456
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.93 E-value=0.0047 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34589999999999999999998753
No 457
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.93 E-value=0.0051 Score=61.09 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+....++|+|++|+|||||++.++..+.
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456899999999999999999997543
No 458
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.0092 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=23.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 445899999999999999999998653
No 459
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.92 E-value=0.0069 Score=53.90 Aligned_cols=26 Identities=31% Similarity=0.732 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|.|||||++.++..+
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccc
Confidence 44589999999999999999998754
No 460
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.0074 Score=55.19 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++...
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998754
No 461
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.92 E-value=0.0032 Score=57.59 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|.|||||.+.++..+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999754
No 462
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.006 Score=52.08 Aligned_cols=112 Identities=18% Similarity=0.151 Sum_probs=57.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc---cc-cceEEeecc-ccccccCCHHHHHHHHHHHHhcCCCCCccChhhhH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE---FE-GSSFLANVR-EKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGI 285 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---f~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 285 (364)
+.....|.|+||+|||||.+.+++.+... |. ..+-+...+ +.........+ -.+... .+..+..-..
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq--~~~g~R------~dVld~cpk~ 207 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQ--HGRGRR------MDVLDPCPKA 207 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCch--hhhhhh------hhhcccchHH
Confidence 34457899999999999999999876544 33 223222111 11000000000 000000 1111111111
Q ss_pred H-HHHHhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 286 N-ILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 286 ~-~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
. .+...-...+=++|+|++-..++...+...+ ..|.+++.|.+--
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 1 1222223456789999998776655555444 4688888877653
No 463
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.009 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999864
No 464
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.0056 Score=54.47 Aligned_cols=26 Identities=42% Similarity=0.691 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....++|.|++|.|||||.+.++...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999653
No 465
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.0039 Score=58.15 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 466
>PRK04040 adenylate kinase; Provisional
Probab=96.91 E-value=0.00096 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=23.1
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+|+|+|++|+||||+++.++.++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999885
No 467
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.91 E-value=0.00091 Score=56.36 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+++.|.|++|+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999875
No 468
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0045 Score=57.07 Aligned_cols=127 Identities=26% Similarity=0.268 Sum_probs=68.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
..-+.|..+||||.|||..|+.++.+-.-+|.. . .++ ++..+..+-+.. +..+.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~---m--TGG------DVAPlG~qaVTk---------------iH~lF 435 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAI---M--TGG------DVAPLGAQAVTK---------------IHKLF 435 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceeh---h--cCC------CccccchHHHHH---------------HHHHH
Confidence 345789999999999999999999865444431 0 000 222222222111 12222
Q ss_pred Hhc--CCCeEEEEEecCCC-----------HHHHHHHhccCCCCCCCcE--EEE--EeCChh--hhhhCCCCceeeCCCC
Q 036738 290 SRL--QHKKVLLVIDDVID-----------SKQLEYLAGKHGWYGSGSR--III--TSRDEG--LLKTNRVDEVYKPNGL 350 (364)
Q Consensus 290 ~~l--~~~~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~--ili--Ttr~~~--v~~~~~~~~~~~l~~L 350 (364)
.+- ..+-.||.+|+++- ..+-..|...+...+..|+ +|| |.|..+ ++.....+++++.+.-
T Consensus 436 DWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLP 515 (630)
T KOG0742|consen 436 DWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLP 515 (630)
T ss_pred HHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCC
Confidence 332 45678888998752 1222223222222233333 222 444433 2333345678888877
Q ss_pred CHhHHHHHHhhc
Q 036738 351 NYNEALQLFNMK 362 (364)
Q Consensus 351 ~~~ea~~L~~~~ 362 (364)
..+|-..|+..+
T Consensus 516 GeEERfkll~lY 527 (630)
T KOG0742|consen 516 GEEERFKLLNLY 527 (630)
T ss_pred ChHHHHHHHHHH
Confidence 888888887654
No 469
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.90 E-value=0.0074 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3458999999999999999999874
No 470
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.90 E-value=0.0058 Score=56.69 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=23.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|.|||||.+.++..+
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345689999999999999999999754
No 471
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.90 E-value=0.00062 Score=52.86 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=20.4
Q ss_pred EEEEccCccchHHHHHHHHHHhhccccc
Q 036738 215 IGICGMGGLGKTTLARVIYDLISHEFEG 242 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 242 (364)
|.|+|.+|+||||+|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6899999999999999999988877653
No 472
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.90 E-value=0.0049 Score=63.21 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|+|++|+|||||++.++..+.
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456899999999999999999987543
No 473
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.89 E-value=0.0014 Score=53.17 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=18.7
Q ss_pred EEccCccchHHHHHHHHHHh
Q 036738 217 ICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 217 I~G~~GiGKTtLa~~~~~~~ 236 (364)
|.|+||+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999876
No 474
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.0079 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 475
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.0057 Score=54.70 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34589999999999999999998754
No 476
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.019 Score=49.62 Aligned_cols=126 Identities=17% Similarity=0.269 Sum_probs=69.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhH-HHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGI-NIL 288 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~l 288 (364)
.+++-+.++|++|.|||-||+.+|+. .++.|+. +++ . ++.....+.. .... +.+
T Consensus 179 aQPKGvlLygppgtGktLlaraVahh-----t~c~fir-vsg--------s----elvqk~igeg-------srmvrelf 233 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR-VSG--------S----ELVQKYIGEG-------SRMVRELF 233 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhh-----cceEEEE-ech--------H----HHHHHHhhhh-------HHHHHHHH
Confidence 45667899999999999999999974 3444554 211 1 1111111111 0111 111
Q ss_pred HHhcCCCeEEEEEecCCCHH----------------HHHHHhccCCCC--CCCcEEEEEeCChhhhhh-----CCCCcee
Q 036738 289 GSRLQHKKVLLVIDDVIDSK----------------QLEYLAGKHGWY--GSGSRIIITSRDEGLLKT-----NRVDEVY 345 (364)
Q Consensus 289 ~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~iliTtr~~~v~~~-----~~~~~~~ 345 (364)
.-...+.+.++..|++++.. ..-.++..+.-+ ..+-+||..|..-++++. -..+..+
T Consensus 234 vmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrki 313 (404)
T KOG0728|consen 234 VMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKI 313 (404)
T ss_pred HHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccc
Confidence 12224567788888886421 112233333322 245677776654444433 2345677
Q ss_pred eCCCCCHhHHHHHHh
Q 036738 346 KPNGLNYNEALQLFN 360 (364)
Q Consensus 346 ~l~~L~~~ea~~L~~ 360 (364)
+.++-+++.-.++|.
T Consensus 314 efp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 314 EFPPPNEEARLDILK 328 (404)
T ss_pred cCCCCCHHHHHHHHH
Confidence 888888777777664
No 477
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0092 Score=58.49 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=37.4
Q ss_pred ccccccccchhHHHH---HHhhcCCC------CCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 186 ILKKLVGIDSRLEEL---RFLMDKGP------SADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l---~~~L~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+..|.+...+++ .+.|.+.. ..-++-+.++||+|.|||.||++++....-.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 345667887665555 44555432 1345668999999999999999999765433
No 478
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.89 E-value=0.0041 Score=55.55 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345899999999999999999997654
No 479
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.89 E-value=0.0014 Score=57.38 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....+++|.|++|+|||||++.++..+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999877654
No 480
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.01 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++..+
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44589999999999999999998764
No 481
>PLN03073 ABC transporter F family; Provisional
Probab=96.87 E-value=0.0067 Score=61.89 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh
Q 036738 287 ILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 287 ~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~ 338 (364)
.|...+-..+-+|+||+-. |......+...+... +..|||+|++...+..
T Consensus 354 ~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~ 406 (718)
T PLN03073 354 ALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNT 406 (718)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 3455555677899999874 444444444444322 4579999999876655
No 482
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0075 Score=54.33 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|.|||||++.++...
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 483
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0024 Score=61.59 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=23.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|+|.+|+|||||...++....
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 4456899999999999999999987443
No 484
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.86 E-value=0.0039 Score=56.98 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHH
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|.++|..+- ....++-|+|++|+|||+|+..++-.
T Consensus 82 ~~~LD~lLgGGi-~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 82 SQALDGILGGGI-ESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CHHHHHHhCCCC-cCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 445666776543 56678899999999999999887743
No 485
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.86 E-value=0.0046 Score=56.22 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=53.6
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccc-cc-eEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFE-GS-SFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGS 290 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 290 (364)
..+.|.|+.|+||||+++.+++.+....+ .. +.+....+......+... + ... .......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~--~~~---~~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------L--RTS---DDAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------E--Eec---CCCCCHHHHHHH
Confidence 46789999999999999999988754322 12 222211110000000000 0 000 011144567888
Q ss_pred hcCCCeEEEEEecCCCHHHHHHHhcc
Q 036738 291 RLQHKKVLLVIDDVIDSKQLEYLAGK 316 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~~~~~~l~~~ 316 (364)
.|+..+-.||+.++.+.+.++.+...
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~a~ 225 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLKAW 225 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHHHH
Confidence 88999999999999988877655443
No 486
>PRK14528 adenylate kinase; Provisional
Probab=96.86 E-value=0.0051 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.3
Q ss_pred eEEEEEccCccchHHHHHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+.+.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998776
No 487
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.85 E-value=0.0027 Score=63.30 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=23.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|+|++|+|||||++.++..+.
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3456899999999999999999987543
No 488
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.85 E-value=0.011 Score=55.01 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=43.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh--cccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS--HEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINIL 288 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 288 (364)
+.+++.++||.|+||||-...++.++. ..-..+.++. .+.+..-..-+-+....+.+.+-....+..++..++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT-----tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT-----TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE-----eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 478999999999999975444444433 3223344444 233321122222333334444333334444444433
Q ss_pred HHhcCCCeEEEEEecC
Q 036738 289 GSRLQHKKVLLVIDDV 304 (364)
Q Consensus 289 ~~~l~~~~~LlVlDdv 304 (364)
.. +++. -+|.+|-+
T Consensus 277 ~~-l~~~-d~ILVDTa 290 (407)
T COG1419 277 EA-LRDC-DVILVDTA 290 (407)
T ss_pred HH-hhcC-CEEEEeCC
Confidence 32 2333 45666766
No 489
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.85 E-value=0.0071 Score=60.11 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|+|++|+|||||++.++..+.
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~ 56 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGVDK 56 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445899999999999999999997653
No 490
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.85 E-value=0.0011 Score=55.30 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.+++.+.|++|+||||+|+.+......
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 358999999999999999999987643
No 491
>PF13245 AAA_19: Part of AAA domain
Probab=96.85 E-value=0.0033 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=17.5
Q ss_pred eEEEEEccCccchHHHH-HHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLA-RVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa-~~~~~~~ 236 (364)
+++.|.|++|.|||+++ ..+++.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999555 4444444
No 492
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0058 Score=55.82 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 493
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.84 E-value=0.0059 Score=57.06 Aligned_cols=26 Identities=42% Similarity=0.538 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++...
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 494
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0094 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 495
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.84 E-value=0.0076 Score=59.29 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 496
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.84 E-value=0.0048 Score=60.85 Aligned_cols=27 Identities=44% Similarity=0.668 Sum_probs=23.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++.++|++|+||||||..+|++-
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc
Confidence 456789999999999999999999754
No 497
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.83 E-value=0.017 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred ceEEEEEccCccchHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIY 233 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~ 233 (364)
..+++|+|++|+|||||++.+.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhe
Confidence 4589999999999999999977
No 498
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.83 E-value=0.0067 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEccCccchHHHHHHHHHHh
Q 036738 215 IGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+.|.|++|+||||+|+.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 499
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.83 E-value=0.0017 Score=54.18 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=24.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...++.|.|++|+||||+|+.++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999998754
No 500
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.83 E-value=0.0013 Score=56.23 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEEccCccchHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIY 233 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~ 233 (364)
++++|.|++|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999988
Done!