Query 036738
Match_columns 364
No_of_seqs 272 out of 2469
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 3.9E-42 1.3E-46 281.2 10.0 168 8-180 3-170 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1E-41 3.6E-46 282.8 11.0 174 4-180 26-200 (204)
3 3h16_A TIR protein; bacteria T 100.0 1.5E-29 5E-34 206.1 5.2 119 9-129 16-134 (154)
4 2a5y_B CED-4; apoptosis; HET: 99.9 6.1E-26 2.1E-30 222.5 17.8 165 191-364 131-307 (549)
5 3ub2_A TOLL/interleukin-1 rece 99.9 4.6E-26 1.6E-30 182.7 -0.5 107 7-116 4-112 (146)
6 3sfz_A APAF-1, apoptotic pepti 99.9 5.1E-22 1.7E-26 212.2 16.5 172 182-363 118-299 (1249)
7 1vt4_I APAF-1 related killer D 99.9 3.8E-22 1.3E-26 201.1 12.6 162 188-362 128-310 (1221)
8 2js7_A Myeloid differentiation 99.9 4.9E-23 1.7E-27 167.8 4.1 103 8-112 11-116 (160)
9 2j67_A TOLL like receptor 10; 99.9 1.2E-22 4E-27 168.1 4.6 102 8-111 30-134 (178)
10 1z6t_A APAF-1, apoptotic prote 99.9 3.2E-21 1.1E-25 191.0 13.9 171 182-364 118-300 (591)
11 1fyx_A TOLL-like receptor 2; b 99.8 7.8E-23 2.7E-27 164.9 1.0 98 10-110 2-103 (149)
12 1t3g_A X-linked interleukin-1 99.8 2.9E-21 1E-25 157.1 6.6 99 12-110 1-111 (159)
13 3j0a_A TOLL-like receptor 5; m 99.6 1.4E-15 4.7E-20 156.6 8.2 103 9-113 666-774 (844)
14 1w5s_A Origin recognition comp 99.5 1.3E-13 4.3E-18 130.1 11.8 171 186-361 20-226 (412)
15 2v1u_A Cell division control p 99.4 2.5E-12 8.4E-17 120.0 15.1 172 186-362 17-213 (387)
16 2qby_B CDC6 homolog 3, cell di 99.4 4E-12 1.4E-16 118.7 15.8 168 187-362 19-209 (384)
17 2qby_A CDC6 homolog 1, cell di 99.4 1E-12 3.5E-17 122.5 11.0 172 186-362 18-209 (386)
18 2qen_A Walker-type ATPase; unk 99.4 1.3E-12 4.5E-17 120.2 10.6 168 182-361 6-214 (350)
19 1fnn_A CDC6P, cell division co 99.4 1.7E-11 5.8E-16 114.5 16.3 172 186-362 15-205 (389)
20 2fna_A Conserved hypothetical 99.4 6.3E-12 2.2E-16 115.8 13.1 167 182-361 7-220 (357)
21 1njg_A DNA polymerase III subu 99.3 7.4E-12 2.5E-16 108.7 10.7 166 184-362 19-197 (250)
22 2chg_A Replication factor C sm 99.3 3.9E-11 1.3E-15 102.7 14.3 157 184-362 13-173 (226)
23 1sxj_B Activator 1 37 kDa subu 99.1 3.4E-10 1.2E-14 102.8 11.4 156 184-362 17-178 (323)
24 1jbk_A CLPB protein; beta barr 99.1 5.6E-10 1.9E-14 93.1 10.2 51 185-238 19-69 (195)
25 3te6_A Regulatory protein SIR3 99.0 4.7E-09 1.6E-13 94.5 13.1 169 188-362 20-210 (318)
26 1iqp_A RFCS; clamp loader, ext 99.0 1.5E-09 5.1E-14 98.7 8.7 157 184-362 21-181 (327)
27 2chq_A Replication factor C sm 98.9 6E-09 2E-13 94.4 12.2 152 184-361 13-172 (319)
28 1jr3_A DNA polymerase III subu 98.9 6.8E-09 2.3E-13 96.2 11.3 165 185-361 13-189 (373)
29 3h4m_A Proteasome-activating n 98.9 1.2E-08 4.1E-13 91.0 11.2 154 185-362 14-200 (285)
30 3syl_A Protein CBBX; photosynt 98.8 6.3E-08 2.1E-12 87.3 13.0 149 189-362 32-216 (309)
31 2z4s_A Chromosomal replication 98.7 6E-08 2E-12 91.9 12.1 155 187-362 104-275 (440)
32 2qz4_A Paraplegin; AAA+, SPG7, 98.7 9.3E-08 3.2E-12 84.0 12.5 152 187-362 5-189 (262)
33 1sxj_E Activator 1 40 kDa subu 98.7 1.2E-07 4E-12 87.2 13.3 169 184-362 10-205 (354)
34 3bos_A Putative DNA replicatio 98.7 5.3E-09 1.8E-13 90.6 3.8 143 186-362 26-186 (242)
35 3pvs_A Replication-associated 98.7 4E-08 1.4E-12 93.1 10.0 147 184-362 22-177 (447)
36 2p65_A Hypothetical protein PF 98.7 4E-08 1.4E-12 81.3 8.6 51 185-238 19-69 (187)
37 1sxj_D Activator 1 41 kDa subu 98.7 1.4E-07 4.9E-12 86.5 11.9 165 184-361 33-203 (353)
38 3ec2_A DNA replication protein 98.7 8.6E-08 2.9E-12 79.3 9.1 43 195-237 21-63 (180)
39 3uk6_A RUVB-like 2; hexameric 98.6 2.5E-07 8.5E-12 85.5 12.9 52 187-239 43-97 (368)
40 1d2n_A N-ethylmaleimide-sensit 98.6 1.3E-07 4.4E-12 83.8 10.4 150 188-360 33-209 (272)
41 3eie_A Vacuolar protein sortin 98.6 3.3E-07 1.1E-11 83.2 13.4 152 186-362 16-196 (322)
42 1l8q_A Chromosomal replication 98.6 1.3E-07 4.6E-12 85.9 10.6 152 187-362 10-178 (324)
43 1sxj_A Activator 1 95 kDa subu 98.6 3E-07 1E-11 89.0 13.6 163 184-362 35-221 (516)
44 3cf0_A Transitional endoplasmi 98.6 8.3E-07 2.8E-11 79.8 15.0 152 187-362 14-198 (301)
45 1hqc_A RUVB; extended AAA-ATPa 98.6 2.6E-07 9E-12 83.8 11.5 148 184-362 8-180 (324)
46 3u61_B DNA polymerase accessor 98.6 3.3E-07 1.1E-11 83.2 12.1 145 184-359 22-174 (324)
47 3d8b_A Fidgetin-like protein 1 98.6 5.9E-07 2E-11 82.8 13.7 54 184-237 80-142 (357)
48 3pxg_A Negative regulator of g 98.6 5.1E-07 1.7E-11 86.3 13.4 149 184-361 176-336 (468)
49 3pfi_A Holliday junction ATP-d 98.6 3.7E-07 1.3E-11 83.4 11.5 146 185-362 26-196 (338)
50 1xwi_A SKD1 protein; VPS4B, AA 98.6 2.2E-06 7.7E-11 77.7 16.6 152 186-361 10-190 (322)
51 2qp9_X Vacuolar protein sortin 98.5 1.1E-06 3.8E-11 80.8 13.9 153 186-362 49-229 (355)
52 1qvr_A CLPB protein; coiled co 98.5 5.6E-07 1.9E-11 92.4 12.5 52 184-238 166-217 (854)
53 3vfd_A Spastin; ATPase, microt 98.5 1.4E-06 4.7E-11 81.3 14.1 55 184-238 111-174 (389)
54 1r6b_X CLPA protein; AAA+, N-t 98.5 1.6E-06 5.5E-11 88.0 15.6 153 185-361 183-360 (758)
55 3n70_A Transport activator; si 98.5 3.6E-07 1.2E-11 72.8 8.3 47 189-236 2-48 (145)
56 3b9p_A CG5977-PA, isoform A; A 98.5 8.8E-07 3E-11 79.3 11.8 55 184-238 17-80 (297)
57 1a5t_A Delta prime, HOLB; zinc 98.5 3.5E-06 1.2E-10 76.8 15.7 156 194-362 8-179 (334)
58 2zan_A Vacuolar protein sortin 98.5 3.5E-06 1.2E-10 79.9 15.5 156 184-362 130-313 (444)
59 3hu3_A Transitional endoplasmi 98.4 8.8E-07 3E-11 84.8 11.0 152 187-362 203-384 (489)
60 1sxj_C Activator 1 40 kDa subu 98.4 1.4E-06 4.7E-11 79.7 11.4 155 184-361 21-180 (340)
61 3pxi_A Negative regulator of g 98.4 2E-06 6.7E-11 87.3 13.4 148 184-361 176-336 (758)
62 1lv7_A FTSH; alpha/beta domain 98.4 4.3E-06 1.5E-10 73.2 13.1 152 186-361 10-193 (257)
63 4b4t_J 26S protease regulatory 98.4 3.4E-06 1.2E-10 77.9 12.7 150 187-361 147-330 (405)
64 2gno_A DNA polymerase III, gam 98.4 2.5E-06 8.6E-11 76.6 11.5 145 192-362 1-151 (305)
65 4b4t_L 26S protease subunit RP 98.4 5.2E-06 1.8E-10 77.8 13.7 150 187-361 180-363 (437)
66 4fcw_A Chaperone protein CLPB; 98.3 5.4E-06 1.8E-10 74.6 13.3 52 188-239 17-74 (311)
67 4b4t_M 26S protease regulatory 98.3 5.5E-06 1.9E-10 77.6 12.0 151 186-361 179-363 (434)
68 2r62_A Cell division protease 98.3 8.5E-07 2.9E-11 78.2 6.2 54 186-239 9-71 (268)
69 2bjv_A PSP operon transcriptio 98.3 1.7E-06 5.7E-11 76.2 7.9 49 188-237 6-54 (265)
70 2ce7_A Cell division protein F 98.3 7.6E-06 2.6E-10 77.8 12.8 151 187-361 15-197 (476)
71 4b4t_H 26S protease regulatory 98.3 1.7E-05 5.9E-10 74.3 14.8 150 188-362 209-392 (467)
72 1ofh_A ATP-dependent HSL prote 98.2 6.6E-06 2.3E-10 73.8 11.1 51 188-238 15-76 (310)
73 2kjq_A DNAA-related protein; s 98.2 2.3E-06 7.7E-11 68.4 6.8 27 212-238 36-62 (149)
74 2w58_A DNAI, primosome compone 98.2 5.3E-06 1.8E-10 69.7 9.5 62 186-247 23-89 (202)
75 4b4t_I 26S protease regulatory 98.2 1.3E-05 4.3E-10 74.5 11.3 149 188-361 182-364 (437)
76 3t15_A Ribulose bisphosphate c 98.1 9E-06 3.1E-10 72.6 10.0 29 210-238 34-62 (293)
77 1ojl_A Transcriptional regulat 98.1 8.1E-06 2.8E-10 73.3 9.6 47 189-236 3-49 (304)
78 4b4t_K 26S protease regulatory 98.1 1.8E-05 6.1E-10 74.1 11.6 52 188-239 172-233 (428)
79 3pxi_A Negative regulator of g 98.1 1.9E-05 6.6E-10 80.0 12.3 147 188-361 491-673 (758)
80 3co5_A Putative two-component 98.1 1.5E-06 5E-11 69.0 3.0 47 189-236 5-51 (143)
81 2cvh_A DNA repair and recombin 98.1 1.6E-05 5.4E-10 67.5 9.2 35 199-234 8-42 (220)
82 2dhr_A FTSH; AAA+ protein, hex 98.0 4.9E-05 1.7E-09 72.7 13.0 150 185-362 28-213 (499)
83 3cf2_A TER ATPase, transitiona 98.0 4E-05 1.4E-09 77.1 11.9 151 188-362 204-384 (806)
84 1eiw_A Hypothetical protein MT 98.0 4.8E-06 1.7E-10 62.3 3.7 73 11-108 2-74 (111)
85 1iy2_A ATP-dependent metallopr 97.9 5.1E-05 1.7E-09 67.1 10.8 53 185-237 37-98 (278)
86 1ixz_A ATP-dependent metallopr 97.9 7.6E-05 2.6E-09 65.0 11.6 51 187-237 15-74 (254)
87 2x8a_A Nuclear valosin-contain 97.9 0.00016 5.6E-09 63.7 13.2 122 215-361 47-189 (274)
88 1ypw_A Transitional endoplasmi 97.9 6.7E-05 2.3E-09 76.3 12.0 53 187-239 203-265 (806)
89 1r6b_X CLPA protein; AAA+, N-t 97.8 5.5E-05 1.9E-09 76.7 10.2 50 188-237 458-513 (758)
90 1ye8_A Protein THEP1, hypothet 97.8 0.00025 8.6E-09 58.2 11.6 24 214-237 2-25 (178)
91 3m6a_A ATP-dependent protease 97.7 6E-05 2.1E-09 73.2 8.2 51 189-239 82-135 (543)
92 2eyu_A Twitching motility prot 97.7 9E-05 3.1E-09 64.9 8.4 114 210-336 23-136 (261)
93 4gp7_A Metallophosphoesterase; 97.7 8E-05 2.7E-09 60.8 7.5 22 211-232 8-29 (171)
94 4a74_A DNA repair and recombin 97.7 9E-05 3.1E-09 63.2 8.2 38 199-237 13-50 (231)
95 3nbx_X ATPase RAVA; AAA+ ATPas 97.7 4.3E-05 1.5E-09 73.1 6.1 45 188-237 22-66 (500)
96 1um8_A ATP-dependent CLP prote 97.7 6.2E-05 2.1E-09 69.7 6.8 26 212-237 72-97 (376)
97 2c9o_A RUVB-like 1; hexameric 97.6 9.1E-05 3.1E-09 70.4 7.7 52 187-239 36-90 (456)
98 3jvv_A Twitching mobility prot 97.6 7.6E-05 2.6E-09 68.3 6.8 114 212-338 123-236 (356)
99 2cbz_A Multidrug resistance-as 97.6 0.00017 6E-09 62.1 8.7 27 211-237 30-56 (237)
100 2w0m_A SSO2452; RECA, SSPF, un 97.6 8.9E-05 3.1E-09 63.3 6.9 28 211-238 22-49 (235)
101 1qvr_A CLPB protein; coiled co 97.6 0.00038 1.3E-08 71.4 12.6 51 188-238 558-614 (854)
102 2ehv_A Hypothetical protein PH 97.6 3.3E-05 1.1E-09 66.9 3.7 26 210-235 28-53 (251)
103 2ewv_A Twitching motility prot 97.5 0.00032 1.1E-08 64.7 9.7 113 210-335 134-246 (372)
104 2pze_A Cystic fibrosis transme 97.5 0.00049 1.7E-08 58.9 9.9 59 287-347 140-202 (229)
105 2qgz_A Helicase loader, putati 97.5 0.00015 5.3E-09 65.0 6.9 51 196-246 136-187 (308)
106 2zu0_C Probable ATP-dependent 97.5 0.00064 2.2E-08 59.6 10.6 25 211-235 45-69 (267)
107 3hr8_A Protein RECA; alpha and 97.5 0.00018 6E-09 65.7 7.0 98 197-305 46-149 (356)
108 1ji0_A ABC transporter; ATP bi 97.5 0.00027 9.2E-09 61.0 7.8 26 211-236 31-56 (240)
109 3tif_A Uncharacterized ABC tra 97.4 0.00037 1.3E-08 59.9 8.2 26 211-236 30-55 (235)
110 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00021 7E-09 63.9 6.3 24 212-235 123-146 (331)
111 2ixe_A Antigen peptide transpo 97.4 0.00078 2.7E-08 59.2 10.0 27 210-236 43-69 (271)
112 2pjz_A Hypothetical protein ST 97.4 0.00057 2E-08 59.7 9.0 25 212-236 30-54 (263)
113 1in4_A RUVB, holliday junction 97.4 0.0001 3.5E-09 67.1 4.2 53 186-238 23-77 (334)
114 2ghi_A Transport protein; mult 97.4 0.00044 1.5E-08 60.4 7.8 26 211-236 45-70 (260)
115 3lw7_A Adenylate kinase relate 97.3 0.0014 4.7E-08 53.0 10.2 23 213-236 2-24 (179)
116 1ypw_A Transitional endoplasmi 97.3 8.7E-05 3E-09 75.5 3.5 53 187-239 476-538 (806)
117 2zr9_A Protein RECA, recombina 97.3 0.00053 1.8E-08 62.6 8.4 50 197-247 46-96 (349)
118 1rz3_A Hypothetical protein rb 97.3 0.00032 1.1E-08 58.7 6.3 46 193-238 3-48 (201)
119 1n0w_A DNA repair protein RAD5 97.3 0.00054 1.9E-08 58.8 7.9 38 198-236 11-48 (243)
120 3cf2_A TER ATPase, transitiona 97.3 0.00042 1.4E-08 69.7 8.0 151 188-362 477-660 (806)
121 2bbs_A Cystic fibrosis transme 97.3 0.0014 4.7E-08 58.2 10.4 52 287-338 169-224 (290)
122 2ff7_A Alpha-hemolysin translo 97.3 0.00093 3.2E-08 57.8 8.9 26 211-236 34-59 (247)
123 1vpl_A ABC transporter, ATP-bi 97.3 0.001 3.5E-08 57.9 9.2 26 211-236 40-65 (256)
124 1sgw_A Putative ABC transporte 97.3 0.00055 1.9E-08 57.9 7.2 26 212-237 35-60 (214)
125 3io5_A Recombination and repai 97.3 0.00044 1.5E-08 61.6 6.6 97 197-305 11-121 (333)
126 2nq2_C Hypothetical ABC transp 97.3 0.00035 1.2E-08 60.8 5.9 27 211-237 30-56 (253)
127 2b8t_A Thymidine kinase; deoxy 97.3 0.00043 1.5E-08 58.9 6.3 113 210-333 10-126 (223)
128 3c8u_A Fructokinase; YP_612366 97.2 0.0003 1E-08 59.2 5.3 42 196-238 7-48 (208)
129 2yz2_A Putative ABC transporte 97.2 0.0014 4.8E-08 57.4 9.7 26 211-236 32-57 (266)
130 3e70_C DPA, signal recognition 97.2 0.0042 1.4E-07 56.1 13.0 30 210-239 127-156 (328)
131 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00043 1.5E-08 62.7 6.5 108 213-337 172-279 (330)
132 3gd7_A Fusion complex of cysti 97.2 0.0018 6.1E-08 59.8 10.2 26 210-235 45-70 (390)
133 1v5w_A DMC1, meiotic recombina 97.2 0.0015 5.1E-08 59.5 9.6 39 197-236 108-146 (343)
134 1vma_A Cell division protein F 97.2 0.0015 5E-08 58.4 9.3 30 210-239 102-131 (306)
135 1nlf_A Regulatory protein REPA 97.2 0.00078 2.7E-08 59.4 7.3 28 211-238 29-56 (279)
136 3tui_C Methionine import ATP-b 97.1 0.0015 5.2E-08 59.6 9.1 54 285-338 171-229 (366)
137 1qhx_A CPT, protein (chloramph 97.1 0.00023 8E-09 58.1 3.4 25 213-237 4-28 (178)
138 1j8m_F SRP54, signal recogniti 97.1 0.007 2.4E-07 53.8 13.3 28 212-239 98-125 (297)
139 3dm5_A SRP54, signal recogniti 97.1 0.0063 2.2E-07 57.0 13.4 29 211-239 99-127 (443)
140 3sr0_A Adenylate kinase; phosp 97.1 0.00087 3E-08 56.3 6.6 23 214-236 2-24 (206)
141 1xp8_A RECA protein, recombina 97.1 0.00079 2.7E-08 61.8 6.7 97 197-304 59-161 (366)
142 2r44_A Uncharacterized protein 97.1 0.00027 9.3E-09 64.0 3.6 48 187-239 26-73 (331)
143 2px0_A Flagellar biosynthesis 97.1 0.0023 7.8E-08 57.0 9.4 28 211-238 104-131 (296)
144 3hws_A ATP-dependent CLP prote 97.1 0.0005 1.7E-08 63.2 5.2 48 190-237 17-76 (363)
145 1g5t_A COB(I)alamin adenosyltr 97.1 0.0019 6.4E-08 53.4 8.0 116 213-333 29-163 (196)
146 4eun_A Thermoresistant glucoki 97.0 0.0019 6.6E-08 53.8 8.3 26 211-236 28-53 (200)
147 1u94_A RECA protein, recombina 97.0 0.00066 2.3E-08 62.1 5.7 50 197-247 48-98 (356)
148 3kl4_A SRP54, signal recogniti 97.0 0.0073 2.5E-07 56.5 12.9 29 211-239 96-124 (433)
149 3kb2_A SPBC2 prophage-derived 97.0 0.00038 1.3E-08 56.3 3.7 25 213-237 2-26 (173)
150 3umf_A Adenylate kinase; rossm 97.0 0.0026 8.9E-08 53.8 8.9 27 210-236 27-53 (217)
151 2xxa_A Signal recognition part 97.0 0.017 5.8E-07 54.1 15.3 30 210-239 98-127 (433)
152 3d31_A Sulfate/molybdate ABC t 97.0 0.0013 4.5E-08 59.8 7.4 26 211-236 25-50 (348)
153 3vaa_A Shikimate kinase, SK; s 97.0 0.00044 1.5E-08 57.7 4.0 27 211-237 24-50 (199)
154 3lda_A DNA repair protein RAD5 97.0 0.0016 5.4E-08 60.5 8.0 38 197-235 164-201 (400)
155 2q6t_A DNAB replication FORK h 97.0 0.01 3.5E-07 56.0 13.8 54 192-247 182-236 (444)
156 3b5x_A Lipid A export ATP-bind 97.0 0.0032 1.1E-07 61.6 10.6 28 210-237 367-394 (582)
157 1odf_A YGR205W, hypothetical 3 97.0 0.0064 2.2E-07 53.8 11.6 29 210-238 29-57 (290)
158 2z43_A DNA repair and recombin 97.0 0.0021 7.3E-08 58.0 8.4 39 198-237 94-132 (324)
159 1kgd_A CASK, peripheral plasma 97.0 0.00047 1.6E-08 56.6 3.6 26 212-237 5-30 (180)
160 3uie_A Adenylyl-sulfate kinase 96.9 0.00057 2E-08 57.1 4.1 28 210-237 23-50 (200)
161 3a00_A Guanylate kinase, GMP k 96.9 0.00048 1.6E-08 56.8 3.5 28 213-240 2-29 (186)
162 3trf_A Shikimate kinase, SK; a 96.9 0.00054 1.8E-08 56.3 3.7 26 212-237 5-30 (185)
163 1zp6_A Hypothetical protein AT 96.9 0.00053 1.8E-08 56.6 3.6 25 211-235 8-32 (191)
164 1kag_A SKI, shikimate kinase I 96.9 0.00044 1.5E-08 56.1 2.8 25 213-237 5-29 (173)
165 1tf7_A KAIC; homohexamer, hexa 96.9 0.0012 4E-08 63.9 6.2 39 200-239 270-308 (525)
166 3tau_A Guanylate kinase, GMP k 96.9 0.00056 1.9E-08 57.5 3.5 29 210-238 6-34 (208)
167 3bh0_A DNAB-like replicative h 96.9 0.0085 2.9E-07 53.7 11.4 50 196-247 54-103 (315)
168 3e1s_A Exodeoxyribonuclease V, 96.8 0.0062 2.1E-07 59.3 11.0 27 213-239 205-231 (574)
169 1zu4_A FTSY; GTPase, signal re 96.8 0.0055 1.9E-07 55.1 9.9 30 210-239 103-132 (320)
170 1g8p_A Magnesium-chelatase 38 96.8 0.00059 2E-08 62.1 3.6 50 185-237 21-70 (350)
171 2rhm_A Putative kinase; P-loop 96.8 0.00085 2.9E-08 55.4 4.2 27 211-237 4-30 (193)
172 2orw_A Thymidine kinase; TMTK, 96.8 0.001 3.6E-08 54.8 4.6 25 213-237 4-28 (184)
173 1zuh_A Shikimate kinase; alpha 96.8 0.00079 2.7E-08 54.4 3.7 27 211-237 6-32 (168)
174 3tr0_A Guanylate kinase, GMP k 96.8 0.00073 2.5E-08 56.4 3.7 25 212-236 7-31 (205)
175 1nks_A Adenylate kinase; therm 96.8 0.0013 4.4E-08 54.2 5.1 26 213-238 2-27 (194)
176 2r6a_A DNAB helicase, replicat 96.8 0.019 6.6E-07 54.2 13.7 50 196-247 189-239 (454)
177 1yqt_A RNAse L inhibitor; ATP- 96.8 0.0034 1.2E-07 60.7 8.6 126 212-338 312-467 (538)
178 1uj2_A Uridine-cytidine kinase 96.8 0.00084 2.9E-08 58.3 3.9 29 210-238 20-48 (252)
179 2yvu_A Probable adenylyl-sulfa 96.8 0.0015 5.2E-08 53.6 5.2 29 210-238 11-39 (186)
180 3asz_A Uridine kinase; cytidin 96.8 0.00098 3.3E-08 56.0 4.1 28 210-237 4-31 (211)
181 1sky_E F1-ATPase, F1-ATP synth 96.8 0.0063 2.2E-07 57.2 9.9 29 213-241 152-180 (473)
182 1ly1_A Polynucleotide kinase; 96.8 0.00085 2.9E-08 54.7 3.6 22 213-234 3-24 (181)
183 1kht_A Adenylate kinase; phosp 96.7 0.00091 3.1E-08 55.0 3.7 26 213-238 4-29 (192)
184 1ex7_A Guanylate kinase; subst 96.7 0.00063 2.1E-08 56.1 2.6 28 213-240 2-29 (186)
185 1knq_A Gluconate kinase; ALFA/ 96.7 0.0011 3.7E-08 53.9 4.1 26 211-236 7-32 (175)
186 3iij_A Coilin-interacting nucl 96.7 0.00075 2.6E-08 55.2 3.1 26 212-237 11-36 (180)
187 3t61_A Gluconokinase; PSI-biol 96.7 0.00072 2.5E-08 56.5 3.0 25 212-236 18-42 (202)
188 1via_A Shikimate kinase; struc 96.7 0.00074 2.5E-08 55.0 3.0 24 214-237 6-29 (175)
189 2i1q_A DNA repair and recombin 96.7 0.0033 1.1E-07 56.6 7.5 39 197-236 84-122 (322)
190 3bk7_A ABC transporter ATP-bin 96.7 0.0065 2.2E-07 59.5 10.1 126 212-338 382-537 (607)
191 3upu_A ATP-dependent DNA helic 96.7 0.0065 2.2E-07 57.6 9.8 26 214-239 47-72 (459)
192 2c95_A Adenylate kinase 1; tra 96.7 0.001 3.5E-08 55.0 3.7 26 212-237 9-34 (196)
193 3cm0_A Adenylate kinase; ATP-b 96.7 0.0012 4E-08 54.2 3.9 26 212-237 4-29 (186)
194 2ze6_A Isopentenyl transferase 96.7 0.0011 3.9E-08 57.5 3.8 25 213-237 2-26 (253)
195 3tqc_A Pantothenate kinase; bi 96.6 0.0021 7.1E-08 57.8 5.6 48 191-238 70-118 (321)
196 1tue_A Replication protein E1; 96.6 0.0019 6.3E-08 53.8 4.8 41 196-238 44-84 (212)
197 2qor_A Guanylate kinase; phosp 96.6 0.00092 3.1E-08 56.0 3.0 27 211-237 11-37 (204)
198 2iyv_A Shikimate kinase, SK; t 96.6 0.00091 3.1E-08 54.8 2.9 24 214-237 4-27 (184)
199 1tev_A UMP-CMP kinase; ploop, 96.6 0.0013 4.3E-08 54.3 3.8 26 212-237 3-28 (196)
200 2r2a_A Uncharacterized protein 96.6 0.0042 1.4E-07 51.7 7.0 23 213-235 6-28 (199)
201 2jaq_A Deoxyguanosine kinase; 96.6 0.0011 3.8E-08 55.1 3.5 25 214-238 2-26 (205)
202 4a1f_A DNAB helicase, replicat 96.6 0.0088 3E-07 54.1 9.5 41 196-238 32-72 (338)
203 2vli_A Antibiotic resistance p 96.6 0.00085 2.9E-08 54.9 2.6 26 212-237 5-30 (183)
204 2j41_A Guanylate kinase; GMP, 96.6 0.0012 4.2E-08 55.0 3.7 26 212-237 6-31 (207)
205 3tlx_A Adenylate kinase 2; str 96.6 0.0014 4.7E-08 56.6 4.0 27 210-236 27-53 (243)
206 1lvg_A Guanylate kinase, GMP k 96.6 0.001 3.5E-08 55.5 3.0 26 212-237 4-29 (198)
207 1y63_A LMAJ004144AAA protein; 96.6 0.0014 4.6E-08 54.0 3.8 25 211-235 9-33 (184)
208 1s96_A Guanylate kinase, GMP k 96.6 0.0012 4.3E-08 55.9 3.6 28 210-237 14-41 (219)
209 3ney_A 55 kDa erythrocyte memb 96.6 0.0013 4.3E-08 54.8 3.5 27 211-237 18-44 (197)
210 3j16_B RLI1P; ribosome recycli 96.6 0.0022 7.6E-08 62.8 5.8 133 213-347 379-541 (608)
211 2plr_A DTMP kinase, probable t 96.6 0.0015 5.1E-08 54.7 4.0 28 212-239 4-31 (213)
212 1cke_A CK, MSSA, protein (cyti 96.6 0.0013 4.4E-08 55.9 3.6 24 213-236 6-29 (227)
213 1nn5_A Similar to deoxythymidy 96.6 0.0019 6.6E-08 54.2 4.7 29 211-239 8-36 (215)
214 1rj9_A FTSY, signal recognitio 96.6 0.0022 7.4E-08 57.3 5.2 29 211-239 101-129 (304)
215 2bwj_A Adenylate kinase 5; pho 96.6 0.0013 4.5E-08 54.5 3.6 25 213-237 13-37 (199)
216 3ice_A Transcription terminati 96.6 0.0017 5.9E-08 59.3 4.5 30 211-240 173-202 (422)
217 2bdt_A BH3686; alpha-beta prot 96.6 0.0013 4.5E-08 54.1 3.5 23 213-235 3-25 (189)
218 2bbw_A Adenylate kinase 4, AK4 96.6 0.0014 4.8E-08 56.6 3.8 26 212-237 27-52 (246)
219 1znw_A Guanylate kinase, GMP k 96.6 0.0013 4.5E-08 55.1 3.5 27 210-236 18-44 (207)
220 3ozx_A RNAse L inhibitor; ATP 96.6 0.0045 1.6E-07 59.8 7.6 27 210-236 23-49 (538)
221 2cdn_A Adenylate kinase; phosp 96.6 0.0017 6E-08 54.0 4.2 28 210-237 18-45 (201)
222 1aky_A Adenylate kinase; ATP:A 96.6 0.0014 4.8E-08 55.5 3.7 27 211-237 3-29 (220)
223 1e6c_A Shikimate kinase; phosp 96.5 0.0012 4E-08 53.5 3.0 24 214-237 4-27 (173)
224 1htw_A HI0065; nucleotide-bind 96.5 0.0017 5.7E-08 52.1 3.8 26 211-236 32-57 (158)
225 3qf4_A ABC transporter, ATP-bi 96.5 0.0054 1.9E-07 60.0 8.2 27 210-236 367-393 (587)
226 3b60_A Lipid A export ATP-bind 96.5 0.0032 1.1E-07 61.6 6.5 27 211-237 368-394 (582)
227 2jeo_A Uridine-cytidine kinase 96.5 0.0017 6E-08 56.0 4.1 27 210-236 23-49 (245)
228 1ukz_A Uridylate kinase; trans 96.5 0.0016 5.5E-08 54.2 3.8 27 210-236 13-39 (203)
229 2wwf_A Thymidilate kinase, put 96.5 0.0016 5.6E-08 54.5 3.7 28 211-238 9-36 (212)
230 1gvn_B Zeta; postsegregational 96.5 0.0027 9.3E-08 56.2 5.3 27 210-236 31-57 (287)
231 3k1j_A LON protease, ATP-depen 96.5 0.0018 6.1E-08 63.7 4.4 51 184-239 37-87 (604)
232 4e22_A Cytidylate kinase; P-lo 96.5 0.0016 5.5E-08 56.5 3.7 27 211-237 26-52 (252)
233 3aez_A Pantothenate kinase; tr 96.5 0.0019 6.5E-08 57.9 4.3 29 210-238 88-116 (312)
234 1qf9_A UMP/CMP kinase, protein 96.5 0.0018 6.3E-08 53.2 3.8 26 212-237 6-31 (194)
235 2dr3_A UPF0273 protein PH0284; 96.5 0.0021 7.2E-08 55.1 4.3 37 211-247 22-58 (247)
236 2pt5_A Shikimate kinase, SK; a 96.5 0.0019 6.4E-08 52.0 3.8 24 214-237 2-25 (168)
237 2yl4_A ATP-binding cassette SU 96.5 0.0035 1.2E-07 61.6 6.3 27 210-236 368-394 (595)
238 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0024 8.2E-08 57.9 4.7 31 210-240 22-52 (359)
239 1xjc_A MOBB protein homolog; s 96.5 0.0028 9.6E-08 51.2 4.6 34 211-244 3-37 (169)
240 1uf9_A TT1252 protein; P-loop, 96.4 0.0019 6.4E-08 53.7 3.7 26 210-235 6-31 (203)
241 1z6g_A Guanylate kinase; struc 96.4 0.0015 5E-08 55.4 3.0 26 211-236 22-47 (218)
242 2if2_A Dephospho-COA kinase; a 96.4 0.0017 5.8E-08 54.2 3.3 21 214-234 3-23 (204)
243 1sq5_A Pantothenate kinase; P- 96.4 0.0033 1.1E-07 56.3 5.4 28 210-237 78-105 (308)
244 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0022 7.5E-08 55.9 4.0 26 212-237 4-29 (260)
245 2pbr_A DTMP kinase, thymidylat 96.4 0.002 7E-08 53.0 3.6 25 214-238 2-26 (195)
246 2fz4_A DNA repair protein RAD2 96.4 0.03 1E-06 47.9 11.1 41 190-236 92-132 (237)
247 2qt1_A Nicotinamide riboside k 96.4 0.0021 7.1E-08 53.8 3.7 27 210-236 19-45 (207)
248 1ls1_A Signal recognition part 96.4 0.0071 2.4E-07 53.7 7.3 29 211-239 97-125 (295)
249 1zak_A Adenylate kinase; ATP:A 96.4 0.0018 6.1E-08 54.9 3.2 26 212-237 5-30 (222)
250 3ozx_A RNAse L inhibitor; ATP 96.4 0.004 1.4E-07 60.1 5.9 27 211-237 293-319 (538)
251 2pez_A Bifunctional 3'-phospho 96.4 0.0026 8.8E-08 51.9 4.0 27 211-237 4-30 (179)
252 3qf4_B Uncharacterized ABC tra 96.4 0.0023 7.7E-08 62.9 4.2 28 210-237 379-406 (598)
253 2v3c_C SRP54, signal recogniti 96.3 0.0058 2E-07 57.3 6.8 29 211-239 98-126 (432)
254 2p5t_B PEZT; postsegregational 96.3 0.0021 7.1E-08 55.8 3.5 28 210-237 30-57 (253)
255 1zd8_A GTP:AMP phosphotransfer 96.3 0.0019 6.6E-08 54.9 3.2 25 212-236 7-31 (227)
256 1gtv_A TMK, thymidylate kinase 96.3 0.0016 5.5E-08 54.7 2.7 25 214-238 2-26 (214)
257 3fb4_A Adenylate kinase; psych 96.3 0.0023 7.8E-08 53.9 3.6 23 214-236 2-24 (216)
258 1jjv_A Dephospho-COA kinase; P 96.3 0.0021 7.3E-08 53.7 3.3 22 213-234 3-24 (206)
259 3b9q_A Chloroplast SRP recepto 96.3 0.0034 1.2E-07 56.0 4.8 29 210-238 98-126 (302)
260 2v54_A DTMP kinase, thymidylat 96.3 0.0022 7.6E-08 53.3 3.3 25 212-236 4-28 (204)
261 1m7g_A Adenylylsulfate kinase; 96.3 0.003 1E-07 53.1 4.1 27 211-237 24-50 (211)
262 2z0h_A DTMP kinase, thymidylat 96.3 0.0026 8.8E-08 52.6 3.6 25 214-238 2-26 (197)
263 3nwj_A ATSK2; P loop, shikimat 96.3 0.0021 7.2E-08 55.6 3.2 26 213-238 49-74 (250)
264 2og2_A Putative signal recogni 96.2 0.004 1.4E-07 56.8 5.0 29 210-238 155-183 (359)
265 3dl0_A Adenylate kinase; phosp 96.2 0.0025 8.4E-08 53.7 3.3 23 214-236 2-24 (216)
266 4a82_A Cystic fibrosis transme 96.2 0.0023 7.8E-08 62.6 3.5 27 210-236 365-391 (578)
267 2grj_A Dephospho-COA kinase; T 96.2 0.0032 1.1E-07 52.2 3.8 27 210-236 10-36 (192)
268 2iw3_A Elongation factor 3A; a 96.2 0.0088 3E-07 61.4 7.7 124 211-338 460-610 (986)
269 3cmu_A Protein RECA, recombina 96.2 0.0044 1.5E-07 68.0 5.8 98 197-305 1412-1515(2050)
270 2i3b_A HCR-ntpase, human cance 96.2 0.0024 8.3E-08 52.8 3.1 24 214-237 3-26 (189)
271 3r20_A Cytidylate kinase; stru 96.2 0.003 1E-07 53.9 3.6 26 212-237 9-34 (233)
272 1g41_A Heat shock protein HSLU 96.2 0.0051 1.7E-07 57.6 5.4 28 212-239 50-77 (444)
273 2f1r_A Molybdopterin-guanine d 96.2 0.0023 7.8E-08 52.0 2.7 27 213-239 3-29 (171)
274 3lnc_A Guanylate kinase, GMP k 96.2 0.0019 6.4E-08 55.2 2.2 26 211-236 26-52 (231)
275 3ake_A Cytidylate kinase; CMP 96.1 0.0035 1.2E-07 52.2 3.8 24 214-237 4-27 (208)
276 1q57_A DNA primase/helicase; d 96.1 0.037 1.3E-06 53.0 11.3 38 210-247 240-278 (503)
277 2onk_A Molybdate/tungstate ABC 96.1 0.003 1E-07 54.3 3.3 24 213-236 25-48 (240)
278 2wsm_A Hydrogenase expression/ 96.1 0.0049 1.7E-07 51.9 4.6 42 195-239 16-57 (221)
279 2qi9_C Vitamin B12 import ATP- 96.1 0.0023 7.8E-08 55.4 2.5 28 211-238 25-52 (249)
280 2hf9_A Probable hydrogenase ni 96.1 0.0052 1.8E-07 51.9 4.8 40 196-238 25-64 (226)
281 2pcj_A ABC transporter, lipopr 96.1 0.0026 8.8E-08 54.2 2.8 26 211-236 29-54 (224)
282 1ak2_A Adenylate kinase isoenz 96.1 0.0039 1.3E-07 53.3 3.9 26 212-237 16-41 (233)
283 2j37_W Signal recognition part 96.1 0.04 1.4E-06 52.6 11.1 29 210-238 99-127 (504)
284 3llm_A ATP-dependent RNA helic 96.1 0.056 1.9E-06 46.0 11.1 21 213-233 77-97 (235)
285 1b0u_A Histidine permease; ABC 96.1 0.0029 9.9E-08 55.2 2.9 27 210-236 30-56 (262)
286 3zvl_A Bifunctional polynucleo 96.1 0.016 5.3E-07 54.2 8.1 27 210-236 256-282 (416)
287 1p9r_A General secretion pathw 96.0 0.016 5.3E-07 54.1 8.0 35 211-246 166-200 (418)
288 1w36_D RECD, exodeoxyribonucle 96.0 0.043 1.5E-06 53.9 11.5 38 194-237 152-189 (608)
289 3b85_A Phosphate starvation-in 96.0 0.003 1E-07 53.1 2.7 23 213-235 23-45 (208)
290 2olj_A Amino acid ABC transpor 96.0 0.0032 1.1E-07 54.9 2.9 26 211-236 49-74 (263)
291 3ch4_B Pmkase, phosphomevalona 96.0 0.068 2.3E-06 44.3 10.8 27 210-236 9-35 (202)
292 1pzn_A RAD51, DNA repair and r 96.0 0.0072 2.5E-07 55.1 5.4 37 199-236 119-155 (349)
293 1e4v_A Adenylate kinase; trans 96.0 0.0042 1.4E-07 52.2 3.6 23 214-236 2-24 (214)
294 1vht_A Dephospho-COA kinase; s 96.0 0.0047 1.6E-07 52.1 3.9 23 212-234 4-26 (218)
295 2xb4_A Adenylate kinase; ATP-b 96.0 0.0043 1.5E-07 52.7 3.6 23 214-236 2-24 (223)
296 3be4_A Adenylate kinase; malar 96.0 0.0043 1.5E-07 52.4 3.6 25 213-237 6-30 (217)
297 2yhs_A FTSY, cell division pro 96.0 0.0062 2.1E-07 57.7 4.9 36 210-246 291-326 (503)
298 1mv5_A LMRA, multidrug resista 96.0 0.0037 1.3E-07 53.9 3.1 27 210-236 26-52 (243)
299 1cr0_A DNA primase/helicase; R 96.0 0.0067 2.3E-07 53.8 4.9 30 210-239 33-62 (296)
300 3bgw_A DNAB-like replicative h 95.9 0.037 1.3E-06 52.0 10.2 53 192-246 179-231 (444)
301 3fwy_A Light-independent proto 95.9 0.0071 2.4E-07 54.2 5.0 30 210-239 46-75 (314)
302 2ck3_D ATP synthase subunit be 95.9 0.032 1.1E-06 52.4 9.5 55 211-269 152-207 (482)
303 3l0o_A Transcription terminati 95.9 0.039 1.3E-06 50.5 9.7 28 211-238 174-201 (427)
304 1a7j_A Phosphoribulokinase; tr 95.9 0.003 1E-07 56.0 2.5 27 211-237 4-30 (290)
305 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0042 1.4E-07 53.8 3.3 25 211-235 28-52 (250)
306 2zts_A Putative uncharacterize 95.9 0.0068 2.3E-07 52.0 4.7 26 210-235 28-53 (251)
307 1g6h_A High-affinity branched- 95.9 0.0035 1.2E-07 54.5 2.8 26 211-236 32-57 (257)
308 3gfo_A Cobalt import ATP-bindi 95.9 0.0034 1.2E-07 55.1 2.7 26 211-236 33-58 (275)
309 3p32_A Probable GTPase RV1496/ 95.9 0.012 4.2E-07 53.7 6.5 29 210-238 77-105 (355)
310 4g1u_C Hemin import ATP-bindin 95.9 0.0036 1.2E-07 54.8 2.8 26 211-236 36-61 (266)
311 3ux8_A Excinuclease ABC, A sub 95.9 0.0089 3E-07 59.5 6.0 57 287-347 212-276 (670)
312 4f4c_A Multidrug resistance pr 95.9 0.0086 2.9E-07 64.2 6.2 26 211-236 443-468 (1321)
313 3d3q_A TRNA delta(2)-isopenten 95.9 0.0049 1.7E-07 55.6 3.6 25 213-237 8-32 (340)
314 2v9p_A Replication protein E1; 95.9 0.0054 1.8E-07 54.6 3.9 27 210-236 124-150 (305)
315 2f6r_A COA synthase, bifunctio 95.9 0.0051 1.7E-07 54.3 3.6 25 210-234 73-97 (281)
316 4eaq_A DTMP kinase, thymidylat 95.8 0.0068 2.3E-07 51.7 4.2 29 210-238 24-52 (229)
317 3hyn_A Putative signal transdu 95.8 0.033 1.1E-06 44.7 7.7 83 21-110 27-118 (189)
318 1np6_A Molybdopterin-guanine d 95.8 0.0088 3E-07 48.6 4.7 27 212-238 6-32 (174)
319 3a8t_A Adenylate isopentenyltr 95.8 0.0039 1.3E-07 56.1 2.7 27 211-237 39-65 (339)
320 3crm_A TRNA delta(2)-isopenten 95.8 0.0052 1.8E-07 55.1 3.5 25 213-237 6-30 (323)
321 1fx0_B ATP synthase beta chain 95.8 0.031 1.1E-06 52.7 8.9 54 211-268 164-218 (498)
322 2j9r_A Thymidine kinase; TK1, 95.8 0.029 9.8E-07 47.0 7.7 109 210-333 26-138 (214)
323 3exa_A TRNA delta(2)-isopenten 95.8 0.0056 1.9E-07 54.5 3.5 26 212-237 3-28 (322)
324 2iut_A DNA translocase FTSK; n 95.8 0.061 2.1E-06 51.8 10.9 63 296-360 344-420 (574)
325 1q3t_A Cytidylate kinase; nucl 95.8 0.0069 2.4E-07 51.8 4.0 28 210-237 14-41 (236)
326 2ffh_A Protein (FFH); SRP54, s 95.7 0.037 1.3E-06 51.6 9.1 29 211-239 97-125 (425)
327 2ihy_A ABC transporter, ATP-bi 95.7 0.0047 1.6E-07 54.4 2.8 26 211-236 46-71 (279)
328 3foz_A TRNA delta(2)-isopenten 95.7 0.0073 2.5E-07 53.6 4.0 27 211-237 9-35 (316)
329 1u0j_A DNA replication protein 95.7 0.012 4E-07 51.2 5.1 39 197-236 90-128 (267)
330 3fvq_A Fe(3+) IONS import ATP- 95.7 0.0062 2.1E-07 55.5 3.4 26 211-236 29-54 (359)
331 4f4c_A Multidrug resistance pr 95.6 0.033 1.1E-06 59.8 9.4 26 211-236 1104-1129(1321)
332 3vkw_A Replicase large subunit 95.6 0.077 2.6E-06 49.5 10.7 103 210-331 159-268 (446)
333 1ltq_A Polynucleotide kinase; 95.6 0.0073 2.5E-07 53.6 3.7 23 213-235 3-25 (301)
334 2ged_A SR-beta, signal recogni 95.6 0.0093 3.2E-07 48.9 4.1 26 210-235 46-71 (193)
335 1jr3_D DNA polymerase III, del 95.6 0.16 5.4E-06 45.8 12.7 126 210-361 16-153 (343)
336 3thx_A DNA mismatch repair pro 95.6 0.013 4.4E-07 60.2 5.8 24 210-233 660-683 (934)
337 1g8f_A Sulfate adenylyltransfe 95.6 0.01 3.5E-07 56.7 4.8 46 192-238 376-421 (511)
338 3thx_B DNA mismatch repair pro 95.6 0.025 8.4E-07 58.0 7.8 25 210-234 671-695 (918)
339 1svm_A Large T antigen; AAA+ f 95.6 0.01 3.5E-07 54.5 4.5 28 210-237 167-194 (377)
340 4edh_A DTMP kinase, thymidylat 95.5 0.029 1E-06 47.1 7.0 28 212-239 6-33 (213)
341 3cr8_A Sulfate adenylyltranfer 95.5 0.011 3.7E-07 57.2 4.7 28 211-238 368-395 (552)
342 3sop_A Neuronal-specific septi 95.5 0.0082 2.8E-07 52.6 3.6 23 214-236 4-26 (270)
343 3rlf_A Maltose/maltodextrin im 95.5 0.0076 2.6E-07 55.3 3.5 26 211-236 28-53 (381)
344 2qmh_A HPR kinase/phosphorylas 95.5 0.0069 2.4E-07 50.1 2.8 25 212-236 34-58 (205)
345 2yyz_A Sugar ABC transporter, 95.5 0.0079 2.7E-07 54.9 3.5 26 211-236 28-53 (359)
346 2it1_A 362AA long hypothetical 95.5 0.0081 2.8E-07 54.8 3.5 26 211-236 28-53 (362)
347 1oix_A RAS-related protein RAB 95.4 0.0086 2.9E-07 49.3 3.3 25 212-236 29-53 (191)
348 3nh6_A ATP-binding cassette SU 95.4 0.0062 2.1E-07 54.3 2.4 27 210-236 78-104 (306)
349 3kta_A Chromosome segregation 95.4 0.0088 3E-07 48.7 3.2 24 214-237 28-51 (182)
350 1z47_A CYSA, putative ABC-tran 95.4 0.0084 2.9E-07 54.6 3.3 26 211-236 40-65 (355)
351 3end_A Light-independent proto 95.4 0.015 5.1E-07 51.8 5.0 30 210-239 39-68 (307)
352 1v43_A Sugar-binding transport 95.4 0.0089 3E-07 54.8 3.5 26 211-236 36-61 (372)
353 1oxx_K GLCV, glucose, ABC tran 95.4 0.0068 2.3E-07 55.2 2.7 26 211-236 30-55 (353)
354 3cmw_A Protein RECA, recombina 95.4 0.014 4.8E-07 63.2 5.4 102 193-305 364-471 (1706)
355 2r8r_A Sensor protein; KDPD, P 95.3 0.016 5.5E-07 49.0 4.6 27 213-239 7-33 (228)
356 3eph_A TRNA isopentenyltransfe 95.3 0.012 4E-07 54.3 4.0 25 213-237 3-27 (409)
357 2ocp_A DGK, deoxyguanosine kin 95.3 0.011 3.7E-07 50.7 3.6 26 212-237 2-27 (241)
358 3dzd_A Transcriptional regulat 95.3 0.063 2.2E-06 49.1 8.9 48 188-236 129-176 (368)
359 1yrb_A ATP(GTP)binding protein 95.3 0.021 7.1E-07 49.4 5.4 28 210-237 12-39 (262)
360 2f9l_A RAB11B, member RAS onco 95.3 0.0096 3.3E-07 49.2 3.1 24 212-235 5-28 (199)
361 3fdi_A Uncharacterized protein 95.3 0.012 4E-07 49.1 3.6 27 213-239 7-33 (201)
362 1g29_1 MALK, maltose transport 95.3 0.0098 3.4E-07 54.6 3.3 26 211-236 28-53 (372)
363 3g5u_A MCG1178, multidrug resi 95.2 0.016 5.4E-07 62.0 5.3 27 210-236 414-440 (1284)
364 2vp4_A Deoxynucleoside kinase; 95.2 0.0072 2.5E-07 51.5 2.2 26 210-235 18-43 (230)
365 3g5u_A MCG1178, multidrug resi 95.2 0.027 9.2E-07 60.2 7.0 27 210-236 1057-1083(1284)
366 3k9g_A PF-32 protein; ssgcid, 95.1 0.1 3.4E-06 45.2 9.4 28 210-237 25-53 (267)
367 1lw7_A Transcriptional regulat 95.1 0.012 4.2E-07 53.9 3.6 28 212-239 170-197 (365)
368 2axn_A 6-phosphofructo-2-kinas 95.1 0.02 6.8E-07 55.1 5.1 30 210-239 33-62 (520)
369 2o8b_B DNA mismatch repair pro 95.1 0.039 1.3E-06 57.3 7.6 21 212-232 789-809 (1022)
370 2qm8_A GTPase/ATPase; G protei 95.1 0.03 1E-06 50.7 6.0 29 210-238 53-81 (337)
371 3f9v_A Minichromosome maintena 95.1 0.0068 2.3E-07 59.4 1.8 51 186-236 293-351 (595)
372 3v9p_A DTMP kinase, thymidylat 95.1 0.033 1.1E-06 47.2 6.0 29 211-239 24-52 (227)
373 3gmt_A Adenylate kinase; ssgci 95.1 0.013 4.5E-07 49.8 3.4 26 212-237 8-33 (230)
374 3cmu_A Protein RECA, recombina 95.1 0.02 6.7E-07 63.0 5.5 104 191-305 362-471 (2050)
375 4tmk_A Protein (thymidylate ki 95.1 0.041 1.4E-06 46.2 6.5 27 213-239 4-30 (213)
376 1cp2_A CP2, nitrogenase iron p 95.1 0.023 7.8E-07 49.4 5.1 27 213-239 2-28 (269)
377 2h92_A Cytidylate kinase; ross 95.1 0.011 3.7E-07 49.8 2.9 24 213-236 4-27 (219)
378 1nij_A Hypothetical protein YJ 95.1 0.013 4.4E-07 52.6 3.5 26 211-236 3-28 (318)
379 2wji_A Ferrous iron transport 95.1 0.015 5E-07 46.5 3.5 22 213-234 4-25 (165)
380 3lv8_A DTMP kinase, thymidylat 95.0 0.039 1.3E-06 47.1 6.3 28 212-239 27-54 (236)
381 4hlc_A DTMP kinase, thymidylat 95.0 0.022 7.6E-07 47.6 4.6 29 213-241 3-31 (205)
382 1tq4_A IIGP1, interferon-induc 95.0 0.0091 3.1E-07 55.5 2.4 25 211-235 68-92 (413)
383 4b3f_X DNA-binding protein smu 95.0 0.048 1.7E-06 53.9 7.7 46 195-247 193-239 (646)
384 3vr4_D V-type sodium ATPase su 94.9 0.018 6.1E-07 53.8 4.1 27 212-238 151-177 (465)
385 2p67_A LAO/AO transport system 94.9 0.034 1.2E-06 50.4 6.0 29 210-238 54-82 (341)
386 2zej_A Dardarin, leucine-rich 94.9 0.011 3.9E-07 48.1 2.4 21 214-234 4-24 (184)
387 2yv5_A YJEQ protein; hydrolase 94.9 0.023 8E-07 50.5 4.6 33 197-236 156-188 (302)
388 2obl_A ESCN; ATPase, hydrolase 94.9 0.019 6.4E-07 52.2 4.0 29 211-239 70-98 (347)
389 2dyk_A GTP-binding protein; GT 94.9 0.018 6.2E-07 45.3 3.5 23 213-235 2-24 (161)
390 3ld9_A DTMP kinase, thymidylat 94.8 0.023 7.9E-07 48.1 4.2 29 210-238 19-47 (223)
391 2vf7_A UVRA2, excinuclease ABC 94.8 0.088 3E-06 53.3 9.0 58 287-348 740-806 (842)
392 1m8p_A Sulfate adenylyltransfe 94.7 0.034 1.2E-06 54.0 5.7 28 210-237 394-421 (573)
393 3cmw_A Protein RECA, recombina 94.7 0.031 1E-06 60.7 5.6 98 197-304 1416-1518(1706)
394 2wjg_A FEOB, ferrous iron tran 94.7 0.021 7.1E-07 46.4 3.5 24 212-235 7-30 (188)
395 2afh_E Nitrogenase iron protei 94.7 0.032 1.1E-06 49.1 5.0 27 213-239 3-29 (289)
396 3hdt_A Putative kinase; struct 94.6 0.026 8.9E-07 47.8 4.1 27 212-238 14-40 (223)
397 1p5z_B DCK, deoxycytidine kina 94.6 0.0092 3.1E-07 51.9 1.2 28 210-237 22-49 (263)
398 2www_A Methylmalonic aciduria 94.6 0.034 1.2E-06 50.6 5.1 29 210-238 72-100 (349)
399 2npi_A Protein CLP1; CLP1-PCF1 94.6 0.016 5.5E-07 54.8 3.0 26 211-236 137-162 (460)
400 2ce2_X GTPase HRAS; signaling 94.6 0.019 6.6E-07 45.2 3.1 22 214-235 5-26 (166)
401 1f2t_A RAD50 ABC-ATPase; DNA d 94.6 0.024 8.2E-07 44.7 3.5 25 212-236 23-47 (149)
402 3ea0_A ATPase, para family; al 94.6 0.041 1.4E-06 46.9 5.3 29 211-239 3-32 (245)
403 1z2a_A RAS-related protein RAB 94.6 0.02 7E-07 45.3 3.1 24 212-235 5-28 (168)
404 1bif_A 6-phosphofructo-2-kinas 94.5 0.033 1.1E-06 52.9 5.0 29 211-239 38-66 (469)
405 3io3_A DEHA2D07832P; chaperone 94.5 0.057 2E-06 49.0 6.3 28 210-237 16-43 (348)
406 3tmk_A Thymidylate kinase; pho 94.5 0.029 1E-06 47.2 4.0 27 212-238 5-31 (216)
407 2gza_A Type IV secretion syste 94.5 0.017 5.8E-07 52.8 2.7 94 213-314 176-271 (361)
408 3tqf_A HPR(Ser) kinase; transf 94.5 0.027 9.3E-07 45.4 3.5 24 212-235 16-39 (181)
409 3hjn_A DTMP kinase, thymidylat 94.4 0.082 2.8E-06 43.7 6.5 27 214-240 2-28 (197)
410 3iqw_A Tail-anchored protein t 94.4 0.063 2.1E-06 48.4 6.2 29 211-239 15-43 (334)
411 2gj8_A MNME, tRNA modification 94.4 0.026 8.9E-07 45.4 3.4 24 212-235 4-27 (172)
412 3cwq_A Para family chromosome 94.3 0.044 1.5E-06 45.8 4.8 27 214-240 2-29 (209)
413 1nrj_B SR-beta, signal recogni 94.3 0.029 9.9E-07 46.9 3.7 26 210-235 10-35 (218)
414 1x6v_B Bifunctional 3'-phospho 94.3 0.028 9.7E-07 55.0 4.0 27 211-237 51-77 (630)
415 1yqt_A RNAse L inhibitor; ATP- 94.3 0.023 7.9E-07 54.9 3.4 27 210-236 45-71 (538)
416 1u8z_A RAS-related protein RAL 94.3 0.025 8.6E-07 44.7 3.1 23 213-235 5-27 (168)
417 1puj_A YLQF, conserved hypothe 94.3 0.93 3.2E-05 39.6 13.5 24 211-234 119-142 (282)
418 2dpy_A FLII, flagellum-specifi 94.3 0.025 8.5E-07 53.1 3.5 29 210-238 155-183 (438)
419 1pui_A ENGB, probable GTP-bind 94.3 0.015 5.3E-07 48.2 1.9 25 210-234 24-48 (210)
420 1kao_A RAP2A; GTP-binding prot 94.3 0.026 8.7E-07 44.6 3.1 22 214-235 5-26 (167)
421 3con_A GTPase NRAS; structural 94.3 0.025 8.6E-07 46.1 3.1 23 213-235 22-44 (190)
422 2lkc_A Translation initiation 94.3 0.029 1E-06 44.9 3.5 26 210-235 6-31 (178)
423 2gks_A Bifunctional SAT/APS ki 94.3 0.044 1.5E-06 53.0 5.2 29 210-238 370-398 (546)
424 1z08_A RAS-related protein RAB 94.2 0.027 9.1E-07 44.8 3.1 24 212-235 6-29 (170)
425 2nzj_A GTP-binding protein REM 94.2 0.033 1.1E-06 44.5 3.7 23 212-234 4-26 (175)
426 3kjh_A CO dehydrogenase/acetyl 94.2 0.041 1.4E-06 47.0 4.5 25 215-239 3-27 (254)
427 3b6e_A Interferon-induced heli 94.2 0.092 3.1E-06 43.5 6.6 39 191-235 33-71 (216)
428 2c61_A A-type ATP synthase non 94.2 0.033 1.1E-06 52.3 4.0 26 212-237 152-177 (469)
429 1m7b_A RND3/RHOE small GTP-bin 94.2 0.027 9.2E-07 45.7 3.1 25 211-235 6-30 (184)
430 1c1y_A RAS-related protein RAP 94.2 0.028 9.5E-07 44.4 3.1 22 214-235 5-26 (167)
431 2qag_B Septin-6, protein NEDD5 94.2 0.024 8.3E-07 52.7 3.1 21 215-235 45-65 (427)
432 3euj_A Chromosome partition pr 94.1 0.032 1.1E-06 52.8 3.9 26 213-238 30-55 (483)
433 2qe7_A ATP synthase subunit al 94.1 0.037 1.3E-06 52.3 4.2 25 212-236 162-187 (502)
434 3t1o_A Gliding protein MGLA; G 94.1 0.026 9.1E-07 46.0 3.0 28 212-239 14-41 (198)
435 1ek0_A Protein (GTP-binding pr 94.1 0.029 9.8E-07 44.5 3.1 22 214-235 5-26 (170)
436 3zq6_A Putative arsenical pump 94.1 0.09 3.1E-06 47.2 6.7 28 212-239 14-41 (324)
437 1r8s_A ADP-ribosylation factor 94.1 0.031 1.1E-06 44.1 3.3 21 215-235 3-23 (164)
438 1fzq_A ADP-ribosylation factor 94.1 0.047 1.6E-06 44.2 4.4 25 211-235 15-39 (181)
439 1z0j_A RAB-22, RAS-related pro 94.1 0.029 9.9E-07 44.5 3.1 23 213-235 7-29 (170)
440 3j16_B RLI1P; ribosome recycli 94.1 0.027 9.2E-07 55.1 3.4 27 210-236 101-127 (608)
441 3ihw_A Centg3; RAS, centaurin, 94.1 0.029 1E-06 45.7 3.1 24 212-235 20-43 (184)
442 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.03 1E-06 44.9 3.1 24 212-235 7-30 (177)
443 1ky3_A GTP-binding protein YPT 94.1 0.037 1.3E-06 44.4 3.7 26 210-235 6-31 (182)
444 2ius_A DNA translocase FTSK; n 94.1 0.3 1E-05 46.5 10.5 24 213-236 168-191 (512)
445 4gzl_A RAS-related C3 botulinu 94.0 0.034 1.2E-06 46.0 3.5 24 212-235 30-53 (204)
446 2iwr_A Centaurin gamma 1; ANK 94.0 0.028 9.5E-07 45.2 2.9 24 212-235 7-30 (178)
447 3gqb_B V-type ATP synthase bet 94.0 0.021 7.1E-07 53.4 2.3 26 212-237 147-172 (464)
448 3q72_A GTP-binding protein RAD 94.0 0.027 9.2E-07 44.6 2.7 21 214-234 4-24 (166)
449 2rcn_A Probable GTPase ENGC; Y 94.0 0.029 1E-06 51.0 3.2 24 213-236 216-239 (358)
450 2erx_A GTP-binding protein DI- 94.0 0.029 1E-06 44.5 2.9 22 213-234 4-25 (172)
451 1u0l_A Probable GTPase ENGC; p 94.0 0.044 1.5E-06 48.7 4.4 34 197-236 160-193 (301)
452 1svi_A GTP-binding protein YSX 94.0 0.034 1.2E-06 45.4 3.4 26 210-235 21-46 (195)
453 2qnr_A Septin-2, protein NEDD5 94.0 0.025 8.4E-07 50.3 2.7 21 214-234 20-40 (301)
454 4dzz_A Plasmid partitioning pr 94.0 0.049 1.7E-06 45.0 4.4 27 213-239 2-29 (206)
455 1m2o_B GTP-binding protein SAR 94.0 0.031 1.1E-06 45.8 3.1 23 213-235 24-46 (190)
456 1r2q_A RAS-related protein RAB 94.0 0.032 1.1E-06 44.2 3.1 23 213-235 7-29 (170)
457 2fn4_A P23, RAS-related protei 94.0 0.04 1.4E-06 44.1 3.7 26 210-235 7-32 (181)
458 1g16_A RAS-related protein SEC 94.0 0.04 1.4E-06 43.7 3.7 23 213-235 4-26 (170)
459 1tf7_A KAIC; homohexamer, hexa 93.9 0.043 1.5E-06 52.9 4.4 36 211-247 38-75 (525)
460 3q85_A GTP-binding protein REM 93.9 0.04 1.4E-06 43.7 3.5 22 213-234 3-24 (169)
461 2ck3_A ATP synthase subunit al 93.9 0.079 2.7E-06 50.1 5.9 38 197-237 150-188 (510)
462 1upt_A ARL1, ADP-ribosylation 93.8 0.044 1.5E-06 43.5 3.8 24 212-235 7-30 (171)
463 2cjw_A GTP-binding protein GEM 93.8 0.034 1.2E-06 45.6 3.1 23 212-234 6-28 (192)
464 1z0f_A RAB14, member RAS oncog 93.8 0.035 1.2E-06 44.5 3.1 25 211-235 14-38 (179)
465 2hxs_A RAB-26, RAS-related pro 93.8 0.046 1.6E-06 43.7 3.9 25 211-235 5-29 (178)
466 3oaa_A ATP synthase subunit al 93.8 0.11 3.9E-06 48.9 6.9 36 197-235 150-186 (513)
467 3c5c_A RAS-like protein 12; GD 93.8 0.034 1.2E-06 45.3 3.1 24 212-235 21-44 (187)
468 3bc1_A RAS-related protein RAB 93.8 0.035 1.2E-06 45.1 3.1 25 211-235 10-34 (195)
469 1g3q_A MIND ATPase, cell divis 93.8 0.064 2.2E-06 45.4 4.8 27 213-239 3-30 (237)
470 3q9l_A Septum site-determining 93.8 0.062 2.1E-06 46.2 4.8 27 213-239 3-30 (260)
471 2y8e_A RAB-protein 6, GH09086P 93.7 0.037 1.3E-06 44.3 3.1 23 213-235 15-37 (179)
472 2oil_A CATX-8, RAS-related pro 93.7 0.037 1.3E-06 45.2 3.1 25 211-235 24-48 (193)
473 3pqc_A Probable GTP-binding pr 93.7 0.042 1.4E-06 44.7 3.4 25 211-235 22-46 (195)
474 4dsu_A GTPase KRAS, isoform 2B 93.7 0.037 1.3E-06 44.8 3.1 23 213-235 5-27 (189)
475 3kkq_A RAS-related protein M-R 93.7 0.038 1.3E-06 44.6 3.1 25 211-235 17-41 (183)
476 2xau_A PRE-mRNA-splicing facto 93.7 0.47 1.6E-05 47.8 11.7 34 196-234 98-131 (773)
477 2cxx_A Probable GTP-binding pr 93.7 0.035 1.2E-06 45.0 2.9 22 214-235 3-24 (190)
478 2bme_A RAB4A, RAS-related prot 93.7 0.038 1.3E-06 44.7 3.1 25 211-235 9-33 (186)
479 3vr4_A V-type sodium ATPase ca 93.7 0.35 1.2E-05 46.4 10.0 26 211-236 231-256 (600)
480 2a9k_A RAS-related protein RAL 93.7 0.039 1.3E-06 44.5 3.1 24 212-235 18-41 (187)
481 3bk7_A ABC transporter ATP-bin 93.6 0.031 1.1E-06 54.7 2.9 27 210-236 115-141 (607)
482 1mh1_A RAC1; GTP-binding, GTPa 93.6 0.04 1.4E-06 44.5 3.1 23 213-235 6-28 (186)
483 2efe_B Small GTP-binding prote 93.6 0.04 1.4E-06 44.2 3.1 24 212-235 12-35 (181)
484 2r9v_A ATP synthase subunit al 93.6 0.07 2.4E-06 50.5 5.0 25 212-236 175-200 (515)
485 3bwd_D RAC-like GTP-binding pr 93.6 0.041 1.4E-06 44.2 3.1 24 212-235 8-31 (182)
486 2g6b_A RAS-related protein RAB 93.6 0.042 1.4E-06 44.1 3.1 24 212-235 10-33 (180)
487 3dz8_A RAS-related protein RAB 93.5 0.043 1.5E-06 44.8 3.2 23 213-235 24-46 (191)
488 3mfy_A V-type ATP synthase alp 93.5 0.13 4.5E-06 49.1 6.8 25 211-235 226-250 (588)
489 3t5g_A GTP-binding protein RHE 93.5 0.042 1.4E-06 44.2 3.1 23 212-234 6-28 (181)
490 2atv_A RERG, RAS-like estrogen 93.5 0.042 1.4E-06 45.1 3.1 24 212-235 28-51 (196)
491 3cbq_A GTP-binding protein REM 93.5 0.031 1E-06 46.0 2.2 23 211-233 22-44 (195)
492 2ew1_A RAS-related protein RAB 93.5 0.042 1.4E-06 45.5 3.1 24 212-235 26-49 (201)
493 1gwn_A RHO-related GTP-binding 93.5 0.042 1.4E-06 45.7 3.1 25 211-235 27-51 (205)
494 1ega_A Protein (GTP-binding pr 93.5 0.044 1.5E-06 48.7 3.4 25 211-235 7-31 (301)
495 1f6b_A SAR1; gtpases, N-termin 93.5 0.046 1.6E-06 45.0 3.4 22 213-234 26-47 (198)
496 3tw8_B RAS-related protein RAB 93.5 0.038 1.3E-06 44.3 2.8 25 210-234 7-31 (181)
497 3k53_A Ferrous iron transport 93.5 0.047 1.6E-06 47.6 3.5 23 213-235 4-26 (271)
498 2bov_A RAla, RAS-related prote 93.5 0.043 1.5E-06 45.2 3.1 25 211-235 13-37 (206)
499 3fkq_A NTRC-like two-domain pr 93.5 0.072 2.5E-06 48.9 4.9 38 210-247 141-179 (373)
500 1fx0_A ATP synthase alpha chai 93.4 0.034 1.1E-06 52.6 2.6 25 212-236 163-188 (507)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.9e-42 Score=281.22 Aligned_cols=168 Identities=51% Similarity=0.787 Sum_probs=142.3
Q ss_pred CCCCCcccEEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcccHH
Q 036738 8 NVSHWTYDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTWCLD 87 (364)
Q Consensus 8 ~~~~~~~dvfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~~~~ 87 (364)
++...+|||||||+|+|+|+.|+++|+.+|+++||++|+|++++.+|+.+.+.+.+||++|++.|+|+|++|+.|.||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 34678999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCeeEEeEEeecCCcccccccCchHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcccccccccccchhh
Q 036738 88 ELVHILDCKNKNAQRMVYPIFYDVEPTVVRNQTGNFQEAFAKHVEVFKKSIEKVQKWREALKEVANISGWELKEYRNESK 167 (364)
Q Consensus 88 El~~~~~~~~~~~~~~viPv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~e~~ 167 (364)
||..++++.+..++. |+||||+++|++||.|+|+|+++|.++..+ ...+++++|+.||.++++++|+++. .+|.+
T Consensus 83 EL~~i~~~~~~~~~~-ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~ 157 (176)
T 3jrn_A 83 ELVTIMDFEKKGSIT-VMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSK 157 (176)
T ss_dssp HHHHHHHHHHTTSCE-EEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHH
T ss_pred HHHHHHhhhccCCCE-EEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHH
Confidence 999999998777777 999999999999999999999999999877 4457899999999999999999983 67999
Q ss_pred HHHHHHHhhhccc
Q 036738 168 FIWDIINAISSQI 180 (364)
Q Consensus 168 ~~~~~~~~~~~~~ 180 (364)
++.+|+..+..++
T Consensus 158 ~i~~Iv~~v~~~l 170 (176)
T 3jrn_A 158 LVDKIANEISNKK 170 (176)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1e-41 Score=282.81 Aligned_cols=174 Identities=39% Similarity=0.724 Sum_probs=156.4
Q ss_pred CCCCCCCCCcccEEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCc
Q 036738 4 VGNQNVSHWTYDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASST 83 (364)
Q Consensus 4 ~~~~~~~~~~~dvfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~ 83 (364)
++|+..+..+|||||||+++|.|..|+.+|+.+|+++||++|+|++++.+|+.+.+.+.+||++|+++|+|+|++|+.|.
T Consensus 26 ~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~ 105 (204)
T 3ozi_A 26 NPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105 (204)
T ss_dssp --------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCH
T ss_pred CCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCc
Confidence 34444567899999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhhhc-CCCeeEEeEEeecCCcccccccCchHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcccccccccc
Q 036738 84 WCLDELVHILDCKNK-NAQRMVYPIFYDVEPTVVRNQTGNFQEAFAKHVEVFKKSIEKVQKWREALKEVANISGWELKEY 162 (364)
Q Consensus 84 ~~~~El~~~~~~~~~-~~~~~viPv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 162 (364)
||++||..++++.+. .++. |+||||+|+|++||.|+|.|+++|.++.+++.. +++++|+.||.++++++|+++...
T Consensus 106 WCl~EL~~I~e~~~~~~~~~-ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 106 WCLMELAEIVRRQEEDPRRI-ILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp HHHHHHHHHHHHHHHCTTSE-ECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEECTT
T ss_pred HHHHHHHHHHHHHHhcCCee-eEEEEeecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceecCCC
Confidence 999999999999865 4566 999999999999999999999999999877643 589999999999999999999988
Q ss_pred cchhhHHHHHHHhhhccc
Q 036738 163 RNESKFIWDIINAISSQI 180 (364)
Q Consensus 163 ~~e~~~~~~~~~~~~~~~ 180 (364)
..|.+++++|+.++..++
T Consensus 183 ~~e~~~i~~Iv~di~~kl 200 (204)
T 3ozi_A 183 DKQGAIADKVSADIWSHI 200 (204)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 889999999999998876
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=1.5e-29 Score=206.10 Aligned_cols=119 Identities=25% Similarity=0.410 Sum_probs=109.2
Q ss_pred CCCCcccEEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcccHHH
Q 036738 9 VSHWTYDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTWCLDE 88 (364)
Q Consensus 9 ~~~~~~dvfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~~~~E 88 (364)
.+..+|||||||+++| ++.|+.+|+..|+++|++||+|.+++.+|+.|.+.|.++|++|+++|+|+|++|+.|.||+.|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 3468899999999999 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCeeEEeEEeecCCcccccccCchHHHHHH
Q 036738 89 LVHILDCKNKNAQRMVYPIFYDVEPTVVRNQTGNFQEAFAK 129 (364)
Q Consensus 89 l~~~~~~~~~~~~~~viPv~~~v~ps~vr~~~~~~~~~~~~ 129 (364)
+..++.+...++.. |+||||+++|++|+.+.|.+++++..
T Consensus 95 l~~~~~~~~~~~~~-iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 95 LDGLFQLESSGRSR-ILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp HHHHTCCCTTSCCC-EEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred HHHHHHHHhcCCCE-EEEEEecCCHHHHhhCCccHHHHHhh
Confidence 99999987666666 99999999999999999988876554
No 4
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.94 E-value=6.1e-26 Score=222.48 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=132.6
Q ss_pred cccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHH----HhhcccccceEEeeccccccccCCHHHHHHHH
Q 036738 191 VGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYD----LISHEFEGSSFLANVREKSEREGGVISFQRQL 266 (364)
Q Consensus 191 ~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (364)
+||+.++++|.++|....+...++|+|+||||+||||||+++|+ +++.+|++.+|++ ++.... . +...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~-~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-K-STFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-T-HHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-C-CHHHHHHHH
Confidence 49999999999999764335689999999999999999999997 6888999999996 332211 2 578899999
Q ss_pred HHHHhcCCC-CC-----ccChhhhHHHHHHhcCCC-eEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhhhC
Q 036738 267 VSQLLKLTD-NR-----IWNEDDGINILGSRLQHK-KVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKTN 339 (364)
Q Consensus 267 ~~~l~~~~~-~~-----~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~ 339 (364)
+.++..... .. ..+...+...+++.+.++ ++||||||||+..++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999865422 11 122344578899999996 999999999998876 3332 2799999999999999887
Q ss_pred C-CCceeeCCCCCHhHHHHHHhhcCC
Q 036738 340 R-VDEVYKPNGLNYNEALQLFNMKAF 364 (364)
Q Consensus 340 ~-~~~~~~l~~L~~~ea~~L~~~~af 364 (364)
+ ...+|+|++|+.+||++||.++||
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 5 446899999999999999999987
No 5
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=4.6e-26 Score=182.68 Aligned_cols=107 Identities=16% Similarity=0.292 Sum_probs=80.3
Q ss_pred CCCCCCcccEEEccccccCcccHHHHHHHHHHc--CCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcc
Q 036738 7 QNVSHWTYDVFLSFRGADTRKNFISHLYAALNG--KGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTW 84 (364)
Q Consensus 7 ~~~~~~~~dvfiSy~~~D~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~ 84 (364)
|....+.|||||||+++| ..||++|++.|++ .|+++|++++|+.+|+.+.+.|.++|++|+++|+|+|++|+.|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 356778999999999999 4799999999999 599999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhhcCCCeeEEeEEeecCCccc
Q 036738 85 CLDELVHILDCKNKNAQRMVYPIFYDVEPTVV 116 (364)
Q Consensus 85 ~~~El~~~~~~~~~~~~~~viPv~~~v~ps~v 116 (364)
|..|+..++.+......+ +|||+++++++.+
T Consensus 82 c~~El~~al~~~~~~~~~-vIpv~~~v~~~~l 112 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGC-TIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHHTSSSSSSE-EEEEECSCCGGGS
T ss_pred HHHHHHHHHHHHhhcCCc-EEEEEcCCChhhC
Confidence 999999999987544444 8899988875543
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.87 E-value=5.1e-22 Score=212.22 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=132.2
Q ss_pred ccccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHH---hhcccccceEEeeccccccccCC
Q 036738 182 VKPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDL---ISHEFEGSSFLANVREKSEREGG 258 (364)
Q Consensus 182 ~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~ 258 (364)
..|..+..|+||+.++++|.++|.... ...++|+|+||||+||||||++++++ ...+|...+||..+..... . .
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~ 194 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK-S-G 194 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH-H-H
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc-CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc-h-H
Confidence 456677889999999999999997654 67889999999999999999999976 4566877775554443211 1 3
Q ss_pred HHHHHHHHHHHHhcCCC---CCccChhhhHHHHHHhcCCC--eEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 259 VISFQRQLVSQLLKLTD---NRIWNEDDGINILGSRLQHK--KVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 259 ~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
....+..++..+..... ....+.+.+...++..+.++ |+||||||+|+..++..+ ++||+||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 45556666666654332 22345566778888888877 999999999998876553 5789999999999
Q ss_pred hhhhh-CCCCceeeCCC-CCHhHHHHHHhhcC
Q 036738 334 GLLKT-NRVDEVYKPNG-LNYNEALQLFNMKA 363 (364)
Q Consensus 334 ~v~~~-~~~~~~~~l~~-L~~~ea~~L~~~~a 363 (364)
.++.. .+....+++++ |+.+||++||..++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhh
Confidence 98854 45567899996 99999999998765
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.87 E-value=3.8e-22 Score=201.14 Aligned_cols=162 Identities=18% Similarity=0.106 Sum_probs=116.5
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHH--HhhcccccceEEeeccccccccCCHHHHHHH
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYD--LISHEFEGSSFLANVREKSEREGGVISFQRQ 265 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (364)
+..+||+.++++|.++|... +..++|+|+||||+||||||+++++ +++.+|+..++|..++. .. +...++..
T Consensus 128 k~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~---~~-d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CN-SPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC---SS-SHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC---CC-CHHHHHHH
Confidence 34599999999999998753 3478999999999999999999997 47888998544444433 22 44555555
Q ss_pred HHHHHhcCC---CCC-------ccChhhhHHHHHHhc---CCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 266 LVSQLLKLT---DNR-------IWNEDDGINILGSRL---QHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 266 l~~~l~~~~---~~~-------~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
+...+.... ... ..+.+.+...++..+ .++++||||||+|+.++|+.+. +||+||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccC
Confidence 554332111 100 112334455666655 7899999999999998888752 68999999999
Q ss_pred hhhhhhCCCCceeeCC------CCCHhHHHHHHhhc
Q 036738 333 EGLLKTNRVDEVYKPN------GLNYNEALQLFNMK 362 (364)
Q Consensus 333 ~~v~~~~~~~~~~~l~------~L~~~ea~~L~~~~ 362 (364)
+.++..+.....|.|+ +|+.+||++||+++
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH
Confidence 9887543323356666 99999999999875
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.86 E-value=4.9e-23 Score=167.78 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=91.0
Q ss_pred CCCCCcccEEEccccccCcccHHHHHHHHHHcC--CCeEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEeecccccCcc
Q 036738 8 NVSHWTYDVFLSFRGADTRKNFISHLYAALNGK--GIYVFKDDEELEKGESISPRLLKAIE-ASRIAIIVFSKNYASSTW 84 (364)
Q Consensus 8 ~~~~~~~dvfiSy~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~l~-~s~~~v~v~S~~~~~s~~ 84 (364)
......|||||||+++| +.||.+|++.|++. |+++|++++++.+|+++.+.|.++|+ .|+++|+|+|++|+.|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34467899999999999 58999999999985 69999999999999999999999999 799999999999999999
Q ss_pred cHHHHHHHHHhhhcCCCeeEEeEEeecC
Q 036738 85 CLDELVHILDCKNKNAQRMVYPIFYDVE 112 (364)
Q Consensus 85 ~~~El~~~~~~~~~~~~~~viPv~~~v~ 112 (364)
|..|+..++.+....+..+||||+|+..
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 9999999998764333333999999654
No 9
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.86 E-value=1.2e-22 Score=168.10 Aligned_cols=102 Identities=21% Similarity=0.348 Sum_probs=87.3
Q ss_pred CCCCCcccEEEccccccCcccHHHH-HHHHHHc--CCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcc
Q 036738 8 NVSHWTYDVFLSFRGADTRKNFISH-LYAALNG--KGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTW 84 (364)
Q Consensus 8 ~~~~~~~dvfiSy~~~D~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~ 84 (364)
......|||||||+++| ..||.+ |++.|++ .|+++|++++|+.+|+++.+.|.++|++|+++|+|+|++|+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 45678899999999999 489987 9999998 899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhhcCCCeeEEeEEeec
Q 036738 85 CLDELVHILDCKNKNAQRMVYPIFYDV 111 (364)
Q Consensus 85 ~~~El~~~~~~~~~~~~~~viPv~~~v 111 (364)
|+.|+..++.+....+..+||||+|+.
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 999999998655333333399999953
No 10
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=190.97 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=121.5
Q ss_pred ccccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh---hccccc-ceEEeeccccccccC
Q 036738 182 VKPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI---SHEFEG-SSFLANVREKSEREG 257 (364)
Q Consensus 182 ~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~-~~~~~~~~~~~~~~~ 257 (364)
..|..+..|+||+.+++.|.++|.... ...++|+|+||||+||||||.++++.. ..+|+. ++|+. +.... ..
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~- 193 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLK-GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KS- 193 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTST-TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HH-
T ss_pred CCCCCCCeecccHHHHHHHHHHHhccc-CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hH-
Confidence 345667889999999999999997643 567899999999999999999999753 677865 55554 33221 11
Q ss_pred CHHHHHHHHHHHHhcCC---CCCccChhhhHHHHHHhcCC--CeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 258 GVISFQRQLVSQLLKLT---DNRIWNEDDGINILGSRLQH--KKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
.+...+..++..+.... .....+.+.....++..+.+ +++||||||+|+...++.+ +++++||||||+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~ 266 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESC
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCC
Confidence 22333333444443211 12234455666777777755 7899999999998776543 578999999999
Q ss_pred hhhhhhCCCCceeeC---CCCCHhHHHHHHhhcCC
Q 036738 333 EGLLKTNRVDEVYKP---NGLNYNEALQLFNMKAF 364 (364)
Q Consensus 333 ~~v~~~~~~~~~~~l---~~L~~~ea~~L~~~~af 364 (364)
+.++..+. ...+++ ++|+.+|+++||...++
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~ 300 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVN 300 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHT
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhC
Confidence 98876653 344554 58999999999987653
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.85 E-value=7.8e-23 Score=164.95 Aligned_cols=98 Identities=20% Similarity=0.340 Sum_probs=88.1
Q ss_pred CCCcccEEEccccccCcccHHHH-HHHHHHcC--CCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcccH
Q 036738 10 SHWTYDVFLSFRGADTRKNFISH-LYAALNGK--GIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTWCL 86 (364)
Q Consensus 10 ~~~~~dvfiSy~~~D~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~~~ 86 (364)
....|||||||+++|. .||.+ |++.|++. |+++|+|++|+.+|+++.+.|.++|++|+++|+|+|++|+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999994 89997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCeeEEeEEee
Q 036738 87 DELVHILDCK-NKNAQRMVYPIFYD 110 (364)
Q Consensus 87 ~El~~~~~~~-~~~~~~~viPv~~~ 110 (364)
.|+..++... ..++.+ +|||+|+
T Consensus 80 ~El~~a~~~~~~~~~~~-vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDA-AILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTC-CEEEESS
T ss_pred HHHHHHHHHHHhcCCCE-EEEEEec
Confidence 9999887543 334445 9999995
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=157.10 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=85.2
Q ss_pred CcccEEEccccccC---------cccHHHHHH-HHHH-cCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccc
Q 036738 12 WTYDVFLSFRGADT---------RKNFISHLY-AALN-GKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYA 80 (364)
Q Consensus 12 ~~~dvfiSy~~~D~---------~~~~~~~l~-~~L~-~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~ 80 (364)
+.|||||||+++|. ++.||.++. +.|| ..|+++|++++|+.+|+++.+.|.++|+.|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999995 245666655 5799 699999999999999999999999999999999999999997
Q ss_pred -cCcccHHHHHHHHHhhhcCCCeeEEeEEee
Q 036738 81 -SSTWCLDELVHILDCKNKNAQRMVYPIFYD 110 (364)
Q Consensus 81 -~s~~~~~El~~~~~~~~~~~~~~viPv~~~ 110 (364)
.|.||..|+..++.+....+..++|||+++
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~ 111 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECS 111 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 999999999999987744433349999885
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=156.56 Aligned_cols=103 Identities=17% Similarity=0.323 Sum_probs=90.2
Q ss_pred CCCCcccEEEccccccCcccHH-HHHHHHHHc-----CCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccC
Q 036738 9 VSHWTYDVFLSFRGADTRKNFI-SHLYAALNG-----KGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASS 82 (364)
Q Consensus 9 ~~~~~~dvfiSy~~~D~~~~~~-~~l~~~L~~-----~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s 82 (364)
.....|||||||+++| ..|| ++|.+.||+ .|+++|++++|+.||+.+.+.|.++|+.|+++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 4567999999999999 4888 779999996 5899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhhcCCCeeEEeEEeecCC
Q 036738 83 TWCLDELVHILDCKNKNAQRMVYPIFYDVEP 113 (364)
Q Consensus 83 ~~~~~El~~~~~~~~~~~~~~viPv~~~v~p 113 (364)
.||..|+..+..+....+..++|||+++.-|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999988877644333339999996443
No 14
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.49 E-value=1.3e-13 Score=130.11 Aligned_cols=171 Identities=16% Similarity=0.114 Sum_probs=107.4
Q ss_pred ccccccccchhHHHHHHhh-cCC-CC--CCceEEEE--EccCccchHHHHHHHHHHhhccc-----cc-ceEEeeccccc
Q 036738 186 ILKKLVGIDSRLEELRFLM-DKG-PS--ADVRMIGI--CGMGGLGKTTLARVIYDLISHEF-----EG-SSFLANVREKS 253 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L-~~~-~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~f-----~~-~~~~~~~~~~~ 253 (364)
.+..|+||+.+++.|.++| ... .. .....+.| +|++|+|||||++.+++.....+ .. .+|+.. .
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA----F 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG----G
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC----C
Confidence 3478999999999999988 421 00 13456677 99999999999999998875531 22 234431 1
Q ss_pred cccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcC--CCeEEEEEecCCCH--------HHHHHHhccCCCC---
Q 036738 254 EREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQ--HKKVLLVIDDVIDS--------KQLEYLAGKHGWY--- 320 (364)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~~~~~--- 320 (364)
... ....++..++..+....+....+.......+...+. +++++|||||++.. ..+..+...+...
T Consensus 96 ~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 96 NAP-NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GCC-SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCC-CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 222 567788888887754322222234444555665553 67999999999643 3344333222111
Q ss_pred C--CCcEEEEEeCChhhhhh---------CCCCceeeCCCCCHhHHHHHHhh
Q 036738 321 G--SGSRIIITSRDEGLLKT---------NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 321 ~--~gs~iliTtr~~~v~~~---------~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+ ....+|+||++..+... ......+.+++|+.+++.++|..
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~ 226 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQ 226 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHH
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHH
Confidence 2 34457778876543211 11123489999999999999964
No 15
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=2.5e-12 Score=120.02 Aligned_cols=172 Identities=11% Similarity=0.074 Sum_probs=108.8
Q ss_pred ccccccccchhHHHHHHhhcCC-CCCCceEEEEEccCccchHHHHHHHHHHhhccc-----c-cceEEeeccccccccCC
Q 036738 186 ILKKLVGIDSRLEELRFLMDKG-PSADVRMIGICGMGGLGKTTLARVIYDLISHEF-----E-GSSFLANVREKSEREGG 258 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~~ 258 (364)
.+..|+||+.+++.+..++... .....+.+.|+|++|+||||||+.+++.+.... . ..+++. ..... +
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~-~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRE-T 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSC-S
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCC-C
Confidence 3478999999999999988542 114456789999999999999999998875431 1 123333 12222 5
Q ss_pred HHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc--CCCeEEEEEecCCCHH----H---HHHHhccCCCC--CCCcEEE
Q 036738 259 VISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL--QHKKVLLVIDDVIDSK----Q---LEYLAGKHGWY--GSGSRII 327 (364)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~----~---~~~l~~~~~~~--~~gs~il 327 (364)
...++..++..+....+....+..+....+...+ .+++.+|||||++... . +..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 6677778888775433333333445555566665 4568999999997543 2 22233222111 3456777
Q ss_pred EEeCChhhhhhC------CCC-ceeeCCCCCHhHHHHHHhhc
Q 036738 328 ITSRDEGLLKTN------RVD-EVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 328 iTtr~~~v~~~~------~~~-~~~~l~~L~~~ea~~L~~~~ 362 (364)
.||+...+.... ... ..+.+++++.++..++|..+
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 787765322111 112 47899999999999999764
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=4e-12 Score=118.69 Aligned_cols=168 Identities=14% Similarity=0.138 Sum_probs=108.9
Q ss_pred cccccccchhHHHHHHhhcCC-CCCCceEEEEEccCccchHHHHHHHHHHhhcc------c-c-cceEEeeccccccccC
Q 036738 187 LKKLVGIDSRLEELRFLMDKG-PSADVRMIGICGMGGLGKTTLARVIYDLISHE------F-E-GSSFLANVREKSEREG 257 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f-~-~~~~~~~~~~~~~~~~ 257 (364)
+..|+||+.+++.+..++... .....+.+.|+|++|+|||+||+.+++.+... + . ..+++. ..... .
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~---~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREVG---G 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHHHC---S
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-CccCC---C
Confidence 478999999999998877541 11445689999999999999999999987443 1 2 223333 11111 0
Q ss_pred CHHHHHHHHHHHHhcCCC-CCccChhhhHHHHHHhcCCCeEEEEEecCCCHH------H-HHHHhccCCCCCCCcEEEEE
Q 036738 258 GVISFQRQLVSQLLKLTD-NRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK------Q-LEYLAGKHGWYGSGSRIIIT 329 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~-~~~l~~~~~~~~~gs~iliT 329 (364)
+...++..++..+.+... ....+.......+...+..++.+|||||++... . +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 455666777777644322 122233455666777777666699999997543 2 33333321 67788888
Q ss_pred eCChhhhhhC------CCCceeeCCCCCHhHHHHHHhhc
Q 036738 330 SRDEGLLKTN------RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 330 tr~~~v~~~~------~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
|+........ .....+++++++.++..++|..+
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 8875321111 11238999999999999999865
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1e-12 Score=122.51 Aligned_cols=172 Identities=14% Similarity=0.116 Sum_probs=105.9
Q ss_pred ccccccccchhHHHHHHhhcCC-CCCCceEEEEEccCccchHHHHHHHHHHhhcccc---cceEEeeccccccccCCHHH
Q 036738 186 ILKKLVGIDSRLEELRFLMDKG-PSADVRMIGICGMGGLGKTTLARVIYDLISHEFE---GSSFLANVREKSEREGGVIS 261 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~ 261 (364)
.+..|+||+.+++.|.+++... .......+.|+|++|+|||||++.+++.+...+. ..+++.. .... ....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~----~~~~-~~~~ 92 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT----RQID-TPYR 92 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH----HHHC-SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC----CCCC-CHHH
Confidence 4578999999999999988642 0144568899999999999999999998765542 2333331 1111 3445
Q ss_pred HHHHHHHHHhcCCCCCccChhhhHHHHHHhc--CCCeEEEEEecCCCH------HHHHHHhccCCC-CCCCcEEEEEeCC
Q 036738 262 FQRQLVSQLLKLTDNRIWNEDDGINILGSRL--QHKKVLLVIDDVIDS------KQLEYLAGKHGW-YGSGSRIIITSRD 332 (364)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~iliTtr~ 332 (364)
++..++..+....+....+..+....+...+ .+++.+|||||++.. ..+..+...+.. ...+..+|+||++
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 5555555442222112223344444555554 345899999999542 334444332211 1345677888887
Q ss_pred hhhhhhCC-------CCceeeCCCCCHhHHHHHHhhc
Q 036738 333 EGLLKTNR-------VDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 333 ~~v~~~~~-------~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
........ ....+.+++++.++..++|...
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHH
Confidence 64332221 1247899999999999999753
No 18
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.38 E-value=1.3e-12 Score=120.18 Aligned_cols=168 Identities=13% Similarity=0.130 Sum_probs=101.9
Q ss_pred ccccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccc--cccCCH
Q 036738 182 VKPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKS--EREGGV 259 (364)
Q Consensus 182 ~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~ 259 (364)
.++..+..|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++.. .+|+. ..... ....+.
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~ 74 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITR 74 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCH
Confidence 34556678999999999999988642 5899999999999999999998752 44443 22111 001123
Q ss_pred HHHHHHHHHHHhc-----------------CCCCCccChhhhHHHHHHhcCC-CeEEEEEecCCCHH---------HHHH
Q 036738 260 ISFQRQLVSQLLK-----------------LTDNRIWNEDDGINILGSRLQH-KKVLLVIDDVIDSK---------QLEY 312 (364)
Q Consensus 260 ~~~~~~l~~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~---------~~~~ 312 (364)
..++..+...+.. ..+....+..+....+...... ++++|||||++... .+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 3444444433211 0000112334444555554432 38999999996532 2333
Q ss_pred HhccCCCCCCCcEEEEEeCChhhhhh-----------CC-CCceeeCCCCCHhHHHHHHhh
Q 036738 313 LAGKHGWYGSGSRIIITSRDEGLLKT-----------NR-VDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 313 l~~~~~~~~~gs~iliTtr~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+...... ..+.++|+|++...+... .+ ....+++.+|+.+|+.+++..
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHH
Confidence 3222111 247789999887543211 11 124789999999999999864
No 19
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=1.7e-11 Score=114.51 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=110.5
Q ss_pred ccccccccchhHHHHHHhhcC---CCCCCceEEEEEccCccchHHHHHHHHHHhhccc-ccceEEeeccccccccCCHHH
Q 036738 186 ILKKLVGIDSRLEELRFLMDK---GPSADVRMIGICGMGGLGKTTLARVIYDLISHEF-EGSSFLANVREKSEREGGVIS 261 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 261 (364)
.+..++||+.+++.+..++.. ......+.+.|+|++|+|||||++.+++...... ...+++. ..... ....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~-~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYR-NFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCC-SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCC-CHHH
Confidence 347799999999999888764 1112234899999999999999999999876542 2233333 11222 4566
Q ss_pred HHHHHHHHHhcCCCCCccChhhhHHHHHHhc--CCCeEEEEEecCCC--HHHHHHHhccCCCCC----CCcEEEEEeCCh
Q 036738 262 FQRQLVSQLLKLTDNRIWNEDDGINILGSRL--QHKKVLLVIDDVID--SKQLEYLAGKHGWYG----SGSRIIITSRDE 333 (364)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~iliTtr~~ 333 (364)
+...++..+....+............+...+ .+++.+|||||++. ...+..+...+.... .+..+|++|++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 7777777664332222223444444555444 35688999999964 455555554443211 366788888776
Q ss_pred hhhhhCC-------CCceeeCCCCCHhHHHHHHhhc
Q 036738 334 GLLKTNR-------VDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 334 ~v~~~~~-------~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
....... ....+.+++++.++..+++...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 4333221 1236899999999999998654
No 20
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=6.3e-12 Score=115.85 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=97.8
Q ss_pred ccccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccc-cccCCHH
Q 036738 182 VKPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKS-EREGGVI 260 (364)
Q Consensus 182 ~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ 260 (364)
.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++++++..... .+|+. ..... ....+..
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~ 75 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYK 75 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHH
Confidence 344566789999999999999 753 589999999999999999999887532 34554 22110 0000222
Q ss_pred HHHHHHHHHHh-------------cCC------CC---------CccChhhhHHHHHHhcCCCeEEEEEecCCCHH----
Q 036738 261 SFQRQLVSQLL-------------KLT------DN---------RIWNEDDGINILGSRLQHKKVLLVIDDVIDSK---- 308 (364)
Q Consensus 261 ~~~~~l~~~l~-------------~~~------~~---------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---- 308 (364)
.+...+...+. ... .. ...........+.+... ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 33333322221 100 00 01123333444444323 49999999995421
Q ss_pred --HHHHHhccCCCCCCCcEEEEEeCChhhhhh----------C-CC-CceeeCCCCCHhHHHHHHhh
Q 036738 309 --QLEYLAGKHGWYGSGSRIIITSRDEGLLKT----------N-RV-DEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 309 --~~~~l~~~~~~~~~gs~iliTtr~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~L~~~ 361 (364)
-+..+..... ...+.++|+|++....... . +. ...+++.+|+.+|+.+++..
T Consensus 155 ~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~ 220 (357)
T 2fna_A 155 VNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRR 220 (357)
T ss_dssp CCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHH
Confidence 1222221111 1246789999987643211 1 11 35789999999999999875
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.31 E-value=7.4e-12 Score=108.71 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=97.0
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++||+..++.|..++... ...+.+.|+|++|+||||||+.+++.+...+.....-+ . .... .
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~-----~----~~~~-~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC-----G----VCDN-C 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHT--CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC-----S----CSHH-H
T ss_pred CccHHHHhCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-----c----ccHH-H
Confidence 344567999999999999988753 23457899999999999999999988765432111000 0 0000 0
Q ss_pred HHHHHHHh----cCCCCCccChhhhHHHHHHhc-----CCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCC
Q 036738 264 RQLVSQLL----KLTDNRIWNEDDGINILGSRL-----QHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRD 332 (364)
Q Consensus 264 ~~l~~~l~----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~ 332 (364)
..+..... ............ ...+...+ .+++.+|||||++ +...+..+...+.....++.+|+||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HHHhccCCcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 00000000 000000000111 11122221 3467999999995 455666666555444567788888876
Q ss_pred hhhhhh--CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 333 EGLLKT--NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 333 ~~v~~~--~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
...... ......+++++++.+|..+++...
T Consensus 166 ~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~ 197 (250)
T 1njg_A 166 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 197 (250)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHH
Confidence 532211 122457899999999999998754
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.30 E-value=3.9e-11 Score=102.69 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=95.6
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|++..++.+.+++.... .+.+.|+|++|+|||+||+.+++.+........++... ..... .... .
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~-~ 85 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDER-GIDV-V 85 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC---CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTT-CHHH-H
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--ccccc-ChHH-H
Confidence 3445679999999999999987642 33489999999999999999998864432222222211 01111 2211 1
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCChhhhh-h-C
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDEGLLK-T-N 339 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~-~-~ 339 (364)
...+........ ....++.+|||||++. ....+.+...+.....++++|+||+...... . .
T Consensus 86 ~~~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 86 RHKIKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp HHHHHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH
Confidence 122222111100 1135788999999964 3444445444433346778888887653211 1 1
Q ss_pred CCCceeeCCCCCHhHHHHHHhhc
Q 036738 340 RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 340 ~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.....+++++++.++..+++.+.
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHH
Confidence 12347899999999999998754
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=3.4e-10 Score=102.85 Aligned_cols=156 Identities=17% Similarity=0.310 Sum_probs=94.6
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEeeccccccccCCHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
|.....++|++..++.|..++.... .+.+.|+|++|+|||++|+.+++.+... +...+...+ ..... .. ..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~---~~~~~-~~-~~ 88 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN---MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN---ASDDR-GI-DV 88 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC---CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC---TTSCC-SH-HH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC---CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec---Ccccc-Ch-HH
Confidence 3445679999999999999987642 2338999999999999999999986443 221111111 11111 11 11
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHhc-CCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCChhh-hhh
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSRL-QHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDEGL-LKT 338 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~~v-~~~ 338 (364)
+..++..+.... ..+ .+++.+|||||++. ....+.+...+.....++++|+||.+..- ...
T Consensus 89 i~~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 89 VRNQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHTHHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence 222222211000 011 34588999999974 34444444444333467788888866432 111
Q ss_pred -CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 339 -NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 339 -~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
......+++++++.++..+++...
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQI 178 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHH
Confidence 123458999999999999998753
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.07 E-value=5.6e-10 Score=93.05 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=42.5
Q ss_pred cccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 185 KILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.....++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567999999999999988763 3456899999999999999999988643
No 25
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.7e-09 Score=94.51 Aligned_cols=169 Identities=13% Similarity=0.032 Sum_probs=97.7
Q ss_pred ccccccchhHHHHHHhhcCC-CCCCceEEEEEccCccchHHHHHHHHHHhhcccc-----c--ceEEeeccccccccCCH
Q 036738 188 KKLVGIDSRLEELRFLMDKG-PSADVRMIGICGMGGLGKTTLARVIYDLISHEFE-----G--SSFLANVREKSEREGGV 259 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~--~~~~~~~~~~~~~~~~~ 259 (364)
..+.||+.++..|...|... .....+.+.|+|++|+|||++++.+++.+..... . .+++.+. ...+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~-----~~~t~ 94 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL-----ELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT-----CCC--
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc-----ccCCH
Confidence 34889999999998776541 1155678899999999999999999998754321 1 2333311 11255
Q ss_pred HHHHHHHHHHHhcCCCCCccChhhhHHHHHHh--cCCCeEEEEEecCCCH---HHHHHHhccCCCCCCCcEEEEEeCChh
Q 036738 260 ISFQRQLVSQLLKLTDNRIWNEDDGINILGSR--LQHKKVLLVIDDVIDS---KQLEYLAGKHGWYGSGSRIIITSRDEG 334 (364)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iliTtr~~~ 334 (364)
..++..+..++.+...........+...+... -.+++++++||+++.. ..+..+............||.++...+
T Consensus 95 ~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 95 DALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 67778888888654322111222222222221 2467899999999753 334333321110112223333343322
Q ss_pred h---------hhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 335 L---------LKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 335 v---------~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
. ...++ ...+.++|++.+|-.+++.++
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~R 210 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITR 210 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHH
Confidence 1 11221 246899999999999988765
No 26
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=1.5e-09 Score=98.71 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=92.7
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+........++.. . ..... +. ..+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~-~-~~~~~-~~-~~~ 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL-N-ASDER-GI-NVI 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE-E-TTCHH-HH-HTT
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe-e-ccccC-ch-HHH
Confidence 444567999999999999988764 23348999999999999999999986443211112210 0 00000 00 001
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCChhhh-hh-C
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDEGLL-KT-N 339 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~~v~-~~-~ 339 (364)
...+....... ....+++.+||+||++. ......+...+.....++++|+||....-. .. .
T Consensus 94 ~~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 94 REKVKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHHHHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 11111110000 01125678999999964 344555554443334677888888764321 11 1
Q ss_pred CCCceeeCCCCCHhHHHHHHhhc
Q 036738 340 RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 340 ~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.....+.+++++.++..+++...
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~ 181 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYI 181 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHH
Confidence 12347899999999999888653
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.94 E-value=6e-09 Score=94.35 Aligned_cols=152 Identities=14% Similarity=0.195 Sum_probs=93.4
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEeeccccccccCCHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
|.....++|++..++.+..++.... .+.+.|+|++|+|||++|+.+++.+... +...+...+...... .....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-- 86 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-IDVVR-- 86 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC---CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-TTTSS--
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC---CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-hHHHH--
Confidence 3445679999999999999887632 2338999999999999999999986332 221111111110000 00111
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHh--c-CCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCChh-hh
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSR--L-QHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDEG-LL 336 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~ 336 (364)
.....+... + .+++.++|+||++. ....+.+...+.....++++|+||.... +.
T Consensus 87 --------------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 87 --------------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp --------------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred --------------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 111111111 1 25678999999964 4555666666655556778888876643 11
Q ss_pred hh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 337 KT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 337 ~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.. ......+++.+++.++..+++..
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~ 172 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLE 172 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHH
Confidence 11 12235889999999999888864
No 28
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.90 E-value=6.8e-09 Score=96.22 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=92.8
Q ss_pred cccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHH
Q 036738 185 KILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQR 264 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 264 (364)
.....++|++..++.+...+... ...+.+.|+|++|+||||+|+.+++.+....... ........ ...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~-~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCD-NCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHT--CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSH-HHH
T ss_pred CchhhccCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccH-HHH
Confidence 34467999999999999988653 2345789999999999999999998875432110 00000000 000
Q ss_pred HHHHHH----hcCCCCCccChhhhHHHHHHh----cCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCChh
Q 036738 265 QLVSQL----LKLTDNRIWNEDDGINILGSR----LQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDEG 334 (364)
Q Consensus 265 ~l~~~l----~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~~ 334 (364)
.+.... ...........+.....+... ..+++.+|||||++ +......+...+.....+..+|++|.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 010000 000000000111111212211 13467899999996 34555555554443345667777776543
Q ss_pred -hhhh-CCCCceeeCCCCCHhHHHHHHhh
Q 036738 335 -LLKT-NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 335 -v~~~-~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+... ......+++.+++.++..+++.+
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~ 189 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEH 189 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHH
Confidence 1111 12346889999999999988864
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.86 E-value=1.2e-08 Score=91.01 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=88.5
Q ss_pred cccccccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccc
Q 036738 185 KILKKLVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSE 254 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 254 (364)
.....++|.+..++.|.+.+... .-.....+.|+|++|+|||+||+.+++.+...|- .+. ......
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RVV-GSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EEE-GGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hHHHHH
Confidence 34567899999999988876421 0023456899999999999999999988654321 111 111111
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCC
Q 036738 255 REGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHG 318 (364)
Q Consensus 255 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~ 318 (364)
.. ... ........+......++.+|+|||++.. ..+..+...+.
T Consensus 90 ~~--~~~------------------~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 90 KF--IGE------------------GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp CS--TTH------------------HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred hc--cch------------------HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 11 000 0011111222233456689999999643 12223332221
Q ss_pred --CCCCCcEEEEEeCChhhhh-----hCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 319 --WYGSGSRIIITSRDEGLLK-----TNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 319 --~~~~gs~iliTtr~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
....+..||.||....... .......+.+++.+.++..++|..+
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~ 200 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH 200 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHH
Confidence 1123556777776543322 1123457899999999999998754
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.78 E-value=6.3e-08 Score=87.34 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=84.6
Q ss_pred cccccchhHHHHHHhhcC------------CCCCCceEEEEEccCccchHHHHHHHHHHhhcccc--cceEEe-eccccc
Q 036738 189 KLVGIDSRLEELRFLMDK------------GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE--GSSFLA-NVREKS 253 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~-~~~~~~ 253 (364)
.++|.+..++.|.+++.. ........+.|+|++|+|||+||+.+++.+..... ...++. ......
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 478888777777665431 11144557899999999999999999987644311 111222 111100
Q ss_pred cccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCC-----------CHHHHHHHhccCCCCCC
Q 036738 254 EREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVI-----------DSKQLEYLAGKHGWYGS 322 (364)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~ 322 (364)
... ...........+... +..+|+||+++ +......|...+.....
T Consensus 112 ~~~--------------------~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~ 168 (309)
T 3syl_A 112 GQY--------------------IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168 (309)
T ss_dssp CSS--------------------TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred hhc--------------------ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence 000 000001111112221 23599999997 34445555554443345
Q ss_pred CcEEEEEeCChh----------hhhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 323 GSRIIITSRDEG----------LLKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 323 gs~iliTtr~~~----------v~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+..+|.||.... +... ....+.+++++.++-.+++..+
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHH
Confidence 667777775432 2222 2367899999999999988654
No 31
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.74 E-value=6e-08 Score=91.95 Aligned_cols=155 Identities=20% Similarity=0.154 Sum_probs=88.3
Q ss_pred ccccc-ccchhH--HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 187 LKKLV-GIDSRL--EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 187 ~~~~~-Gr~~~~--~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
...|+ |..... ..+........ . ...+.|+|++|+||||||+.+++.+...++..-++.. +...+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v---------~~~~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPG-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI---------TSEKFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTT-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE---------EHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCC-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe---------eHHHHH
Confidence 34566 655433 33344443322 2 5678999999999999999999987665543322220 122233
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----HHHHHHhccCCC-CCCCcEEEEEeCChh----
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----KQLEYLAGKHGW-YGSGSRIIITSRDEG---- 334 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~iliTtr~~~---- 334 (364)
..+...+... ....+...+..+..+|+|||++.. ...+.+...+.. ...|..||+||.+..
T Consensus 173 ~~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 173 NDLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 3444433221 112233444446779999999532 222223222110 135678999987632
Q ss_pred -----hhhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 335 -----LLKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 335 -----v~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+...+..+.++.+++++.++..+++.+.
T Consensus 243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 2222223457899999999999988764
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.74 E-value=9.3e-08 Score=83.97 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=82.2
Q ss_pred cccccccchhHHHHHHhhc---CCC------CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccC
Q 036738 187 LKKLVGIDSRLEELRFLMD---KGP------SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG 257 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~---~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 257 (364)
...++|.+..++.|.+++. ... ....+.+.|+|++|+|||+||+.+++.....| +.+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 4568888888777766542 111 13345688999999999999999999775432 1221 111111110
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH-----------------HHHHHHhccCCCC
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS-----------------KQLEYLAGKHGWY 320 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~~ 320 (364)
.. ........+.......+.+|+|||++.. ..+..++..+...
T Consensus 81 ~~--------------------~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 81 GL--------------------GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp TH--------------------HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred Ch--------------------hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 00 0011111222223345789999999754 1223333322211
Q ss_pred --CCCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 --GSGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 --~~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..||.||........ ......+.+++.+.++..+++..+
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~ 189 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQH 189 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 234456666655432211 123467889999999999988654
No 33
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=1.2e-07 Score=87.25 Aligned_cols=169 Identities=13% Similarity=0.065 Sum_probs=89.1
Q ss_pred ccccccccccchhHHHHHHhh-cCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecc------------
Q 036738 184 PKILKKLVGIDSRLEELRFLM-DKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVR------------ 250 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L-~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~------------ 250 (364)
|.....++|.+..++.+..++ ..+ .... +.|+|++|+||||+++.+++.+.....+.+++....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~--~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPR--DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTT--CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCC--CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 444567899999999999988 543 2233 899999999999999999996533222211111000
Q ss_pred ----------ccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC--HHHHHHHhccCC
Q 036738 251 ----------EKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID--SKQLEYLAGKHG 318 (364)
Q Consensus 251 ----------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~ 318 (364)
...............++..+...... . ... .+. .+..++-++|||++.. ......+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~---~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV--D---FQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhccc--c---ccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 00000000000122222222111000 0 000 000 0234667999999974 333444444333
Q ss_pred CCCCCcEEEEEeCChh-hhhh-CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 319 WYGSGSRIIITSRDEG-LLKT-NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 319 ~~~~gs~iliTtr~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
....++.+|++|.+.. +... ......+++++++.++..+++.+.
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHH
Confidence 2345678888887643 2111 123368899999999999888653
No 34
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.72 E-value=5.3e-09 Score=90.60 Aligned_cols=143 Identities=15% Similarity=0.101 Sum_probs=79.3
Q ss_pred ccccccccc---hhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHH
Q 036738 186 ILKKLVGID---SRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 186 ~~~~~~Gr~---~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
....|+|.. ..++.+..++.. ...+.+.|+|++|+||||||+.+++..........++. ...... ..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~---~~--- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHAS---IS--- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGG---SC---
T ss_pred ChhhccCCCCCHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHH---HH---
Confidence 445677743 456666666654 24567899999999999999999998765433334443 111100 00
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--HH--HHHHhccCCCC-CCCc-EEEEEeCChh--
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--KQ--LEYLAGKHGWY-GSGS-RIIITSRDEG-- 334 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~--~~~l~~~~~~~-~~gs-~iliTtr~~~-- 334 (364)
... + ..+ .++.+|||||++.. .. .+.+...+... ..+. ++|+||+...
T Consensus 96 -------------------~~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 96 -------------------TAL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp -------------------GGG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred -------------------HHH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 000 0 001 34568999999532 11 22222211100 1222 4777776432
Q ss_pred -------hhhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 335 -------LLKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 335 -------v~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+...+.....+++++++.++..+++...
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHH
Confidence 1111111267899999999999998754
No 35
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=4e-08 Score=93.15 Aligned_cols=147 Identities=21% Similarity=0.265 Sum_probs=86.2
Q ss_pred ccccccccccchhH---HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 184 PKILKKLVGIDSRL---EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~---~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
|.....++|.+..+ ..|...+... ..+.+.|+|++|+||||||+.+++.....|.. +. .... +..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~---~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~~~-~~~ 89 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG---HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AVTS-GVK 89 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT---CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TTTC-CHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC---CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----eccC-CHH
Confidence 44557799999888 6777777663 34679999999999999999999987544321 11 0011 222
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEE-EeCChhh--
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--KQLEYLAGKHGWYGSGSRIII-TSRDEGL-- 335 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ili-Ttr~~~v-- 335 (364)
. +..++... .......++.+|+||+++.. .+.+.|+..+.. ....+|. ||.++..
T Consensus 90 ~-ir~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l 149 (447)
T 3pvs_A 90 E-IREAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFEL 149 (447)
T ss_dssp H-HHHHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSS
T ss_pred H-HHHHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCccccc
Confidence 1 11121111 11112457789999999743 344445544431 2234443 5555421
Q ss_pred hh-hCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 336 LK-TNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 336 ~~-~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.. ......++.+++++.++..+++.+.
T Consensus 150 ~~aL~sR~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 150 NSALLSRARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp CHHHHTTEEEEECCCCCHHHHHHHHHHH
T ss_pred CHHHhCceeEEeeCCcCHHHHHHHHHHH
Confidence 11 1123458899999999999888653
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.70 E-value=4e-08 Score=81.31 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=42.4
Q ss_pred cccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 185 KILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.....++||+.++..+.+.+.. ...+.+.|+|++|+|||+||+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999998866 33456799999999999999999988644
No 37
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=1.4e-07 Score=86.53 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=90.9
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc--cccceEEeeccccccccCCHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE--FEGSSFLANVREKSEREGGVIS 261 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 261 (364)
|.....++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++.+... +...+...+. .... ...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~~-~~~- 104 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN---LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDER-GIS- 104 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT---CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCC-CHH-
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC---CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---cccc-chH-
Confidence 4445679999999999999987642 2238999999999999999999886421 2222111111 1101 221
Q ss_pred HHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh
Q 036738 262 FQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT 338 (364)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~ 338 (364)
.+.+................ ........++-+|++|+++. ......+...+.......++|++|.... +...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 179 (353)
T 1sxj_D 105 IVREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDP 179 (353)
T ss_dssp HHTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcch
Confidence 12222222211111000000 01111234567999999863 3334444443332245567777775442 1111
Q ss_pred C-CCCceeeCCCCCHhHHHHHHhh
Q 036738 339 N-RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 339 ~-~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
. .....+.+.+++.++..+.+..
T Consensus 180 l~sR~~~i~~~~~~~~~~~~~l~~ 203 (353)
T 1sxj_D 180 LASQCSKFRFKALDASNAIDRLRF 203 (353)
T ss_dssp HHHHSEEEECCCCCHHHHHHHHHH
T ss_pred hhccCceEEeCCCCHHHHHHHHHH
Confidence 1 1124789999999999888765
No 38
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.65 E-value=8.6e-08 Score=79.32 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=31.1
Q ss_pred hhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 195 SRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..++.+.+++..-.......+.|+|++|+|||||++.++..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444555555433223456899999999999999999999875
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.64 E-value=2.5e-07 Score=85.55 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=39.9
Q ss_pred cccccccchhHHHH---HHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 187 LKKLVGIDSRLEEL---RFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l---~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...|+|++.....+ ...+.... ...+.+.|+|++|+|||+||+.+++.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK-IAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 56799999887764 44444433 334689999999999999999999988643
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.64 E-value=1.3e-07 Score=83.79 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=79.5
Q ss_pred ccccccchhHHHHHH-------hhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHH
Q 036738 188 KKLVGIDSRLEELRF-------LMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVI 260 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~-------~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 260 (364)
..++|....++.+.. .+........+.+.|+|++|+|||+||+.+++.....| +.+...... ... ...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~-~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGF-SET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTC-CHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCC-chH
Confidence 456777666554444 33222225667899999999999999999998754321 112110000 000 000
Q ss_pred HHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH------------HHHHHHhccCCC---CCCCcE
Q 036738 261 SFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS------------KQLEYLAGKHGW---YGSGSR 325 (364)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~ 325 (364)
.. .......+......+..+|+|||++.. ..++.+...+.. .+....
T Consensus 108 ~~------------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 108 AK------------------CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp HH------------------HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred HH------------------HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 00 011112223333467889999998542 223334333321 223344
Q ss_pred EEEEeCChhhhhhC----CCCceeeCCCCCH-hHHHHHHh
Q 036738 326 IIITSRDEGLLKTN----RVDEVYKPNGLNY-NEALQLFN 360 (364)
Q Consensus 326 iliTtr~~~v~~~~----~~~~~~~l~~L~~-~ea~~L~~ 360 (364)
||.||.....+... .....+++++++. ++-.+++.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALE 209 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHH
Confidence 66677766544331 1245789999988 55555553
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.64 E-value=3.3e-07 Score=83.22 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=85.7
Q ss_pred ccccccccchhHHHHHHhhc---------CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 186 ILKKLVGIDSRLEELRFLMD---------KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~---------~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
.-..++|.+..++.|.+.+. .......+-+.|+|++|+|||+||+.+++.....| +.+. .
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~------- 84 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-S------- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-H-------
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-h-------
Confidence 45678999999998888662 11113456789999999999999999998864432 1111 1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhH-HHHHHhcCCCeEEEEEecCCCHH-------------HHHHHhccC---CC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGI-NILGSRLQHKKVLLVIDDVIDSK-------------QLEYLAGKH---GW 319 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~ 319 (364)
..+ .... ........ ..+......++.+|+||+++... ....++..+ ..
T Consensus 85 ---~~l----~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 85 ---SDL----VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp ---HHH----HTTT-------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred ---HHH----hhcc-------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 000 0000 00111111 11222234567899999996321 122232222 12
Q ss_pred CCCCcEEEEEeCChhhhhh---CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 320 YGSGSRIIITSRDEGLLKT---NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 320 ~~~gs~iliTtr~~~v~~~---~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
...+..||.||..+..+.. -.....+.++..+.++..++|..+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~ 196 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN 196 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHH
Confidence 2345556657765432211 023457789999999998888754
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.64 E-value=1.3e-07 Score=85.86 Aligned_cols=152 Identities=19% Similarity=0.145 Sum_probs=81.3
Q ss_pred ccccc-ccchh--HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 187 LKKLV-GIDSR--LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 187 ~~~~~-Gr~~~--~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
.++|+ |.... ...+..++.... .....+.|+|++|+||||||+.+++.+...-...+++. ...+.
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-----------~~~~~ 77 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-----------ADDFA 77 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-----------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-----------HHHHH
Confidence 34565 54432 334445444432 24457899999999999999999998754311223332 12223
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHH----HHHHHhccCCC-CCCCcEEEEEeCChh----
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK----QLEYLAGKHGW-YGSGSRIIITSRDEG---- 334 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~iliTtr~~~---- 334 (364)
..+...+... . ...+...+. +..+|+|||++... ..+.+...+.. ...+..+|+||.+..
T Consensus 78 ~~~~~~~~~~------~----~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 78 QAMVEHLKKG------T----INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHT------C----HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred HHHHHHHHcC------c----HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 3333332211 1 111222222 36699999995421 12222221110 124567888876432
Q ss_pred -----hhhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 335 -----LLKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 335 -----v~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+...+....++++++ +.++..+++...
T Consensus 147 ~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 147 GVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp TSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred HhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 111222335789999 999999988754
No 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=3e-07 Score=88.99 Aligned_cols=163 Identities=16% Similarity=0.125 Sum_probs=88.1
Q ss_pred ccccccccccchhHHHHHHhhcCCC--------------CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeec
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGP--------------SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANV 249 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 249 (364)
|.....++|++..++.|..++.... ....+.+.|+|++|+||||||+.+++.+.. . .+.+. .
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--~-~i~in-~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--D-ILEQN-A 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC--E-EEEEC-T
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC--C-EEEEe-C
Confidence 4455779999999999999886410 013468999999999999999999998731 1 11221 1
Q ss_pred cccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH--HhcCCCeEEEEEecCCCH-----HHHHHHhccCCCCCC
Q 036738 250 REKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG--SRLQHKKVLLVIDDVIDS-----KQLEYLAGKHGWYGS 322 (364)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~l~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~ 322 (364)
+... . ...+...+....... .......... .....++.+|+||+++.. ..+..+...+. ..
T Consensus 111 ---s~~~-~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~ 178 (516)
T 1sxj_A 111 ---SDVR-S-KTLLNAGVKNALDNM-----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KT 178 (516)
T ss_dssp ---TSCC-C-HHHHHHTGGGGTTBC-----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HC
T ss_pred ---CCcc-h-HHHHHHHHHHHhccc-----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hc
Confidence 1111 1 112222211111100 0000000000 012357889999999532 12233332221 12
Q ss_pred CcEEEEEeCCh---hhhhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 323 GSRIIITSRDE---GLLKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 323 gs~iliTtr~~---~v~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+..||+++.+. .+.........+.+++++.++..+++.+.
T Consensus 179 ~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 179 STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHH
Confidence 33455555432 22222233557899999999998887653
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.61 E-value=8.3e-07 Score=79.78 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=87.4
Q ss_pred cccccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 187 LKKLVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
...++|.+..++.|.+.+... .-...+.+.|+|++|+|||+||+.++...... ++. .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~----v---- 80 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS----I---- 80 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEE----E----
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEE----E----
Confidence 456889888888887765321 01345678999999999999999999876432 221 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHH----------------HHHHHhccCCC-
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK----------------QLEYLAGKHGW- 319 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~- 319 (364)
+...+. ....+.. .......+.......+.+|+||+++... ....++..+..
T Consensus 81 -~~~~l~----~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 81 -KGPELL----TMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp -CHHHHH----HHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred -EhHHHH----hhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 111222 2222211 1112223333334567899999997431 12333322211
Q ss_pred -CCCCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 320 -YGSGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 320 -~~~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
...+..||.||..+..... ......+.++..+.++-.++|..+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 198 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 198 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHH
Confidence 1235566667765532221 123467899999999988887643
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.60 E-value=2.6e-07 Score=83.77 Aligned_cols=148 Identities=22% Similarity=0.213 Sum_probs=84.3
Q ss_pred ccccccccccchhHHHHHHhhcCCC--CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGP--SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVIS 261 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 261 (364)
|.....|+|++..+..+..++.... ......+.|+|++|+|||+||+.+++.....| .++. .. ... ...
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~---~~~-~~~- 78 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GP---AIE-KPG- 78 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TT---TCC-SHH-
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-cc---ccC-ChH-
Confidence 3445779999999998888775210 12345689999999999999999998774332 1221 11 000 111
Q ss_pred HHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--HHHHHHhccCCCC------------------C
Q 036738 262 FQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--KQLEYLAGKHGWY------------------G 321 (364)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~ 321 (364)
.+... +...+ .+..+|+|||++.. .....+...+... .
T Consensus 79 ---~l~~~------------------l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 79 ---DLAAI------------------LANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp ---HHHHH------------------HTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred ---HHHHH------------------HHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 11111 11111 34568999999753 2333332211110 0
Q ss_pred CCcEEEEEeCChhhh-hhC--CCCceeeCCCCCHhHHHHHHhhc
Q 036738 322 SGSRIIITSRDEGLL-KTN--RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 322 ~gs~iliTtr~~~v~-~~~--~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
++.++|.||...... ..+ .....+.+++++.+|..+++.+.
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~ 180 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRD 180 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHH
Confidence 234566666543221 111 12357899999999999888654
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.60 E-value=3.3e-07 Score=83.23 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=87.9
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQ 263 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 263 (364)
|.....++|.+..+..+..++... .....+.+.|++|+|||++|+.+++.+... ...+. .... . ...+
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~--~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-----~~~~-~-~~~i 89 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG--KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-----GSDC-K-IDFV 89 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT--CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-----TTTC-C-HHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-----cccc-C-HHHH
Confidence 445578999999999999998854 334577888999999999999999887432 12222 1111 1 1122
Q ss_pred HHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHH---HHHHHhccCCCCCCCcEEEEEeCChh-----h
Q 036738 264 RQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK---QLEYLAGKHGWYGSGSRIIITSRDEG-----L 335 (364)
Q Consensus 264 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iliTtr~~~-----v 335 (364)
...+....... ...+++.+|+|||++... ....+...+.....++++|+||.... +
T Consensus 90 ~~~~~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 90 RGPLTNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp HTHHHHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred HHHHHHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 22222111100 012477899999998643 44444443322234667888876643 2
Q ss_pred hhhCCCCceeeCCCCCHhHHHHHH
Q 036738 336 LKTNRVDEVYKPNGLNYNEALQLF 359 (364)
Q Consensus 336 ~~~~~~~~~~~l~~L~~~ea~~L~ 359 (364)
... ...+++++++.+|-.+++
T Consensus 154 ~sR---~~~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 154 QSR---CRVITFGQPTDEDKIEMM 174 (324)
T ss_dssp HHH---SEEEECCCCCHHHHHHHH
T ss_pred Hhh---CcEEEeCCCCHHHHHHHH
Confidence 222 247899999988854443
No 47
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.59 E-value=5.9e-07 Score=82.79 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=41.3
Q ss_pred ccccccccccchhHHHHHHhhcC-----C----CCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 184 PKILKKLVGIDSRLEELRFLMDK-----G----PSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~-----~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+.....++|.+..++.|.+.+.. . .....+.+.|+|++|+|||+||+.++....
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 33456789999999998887632 0 013456789999999999999999998764
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.58 E-value=5.1e-07 Score=86.28 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=82.2
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc-c----cceEEeeccccccccCC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF-E----GSSFLANVREKSEREGG 258 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~----~~~~~~~~~~~~~~~~~ 258 (364)
+...+.++||+.++..+...|... ....+.|+|++|+|||+||+.+++.+...+ + ..-++. + +
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~---~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~-l--------~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-L--------D 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C---------
T ss_pred cCCCCCccCcHHHHHHHHHHHhcc---CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e--------e
Confidence 344567999999999999998763 234568999999999999999999874432 1 111221 0 0
Q ss_pred HHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhh-
Q 036738 259 VISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLK- 337 (364)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~- 337 (364)
.. ....+. ........+......++.+|++| ...+....+.+.+. ....++|.+|.......
T Consensus 244 ~~-------~~~~g~------~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 244 MG-------TKYRGE------FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKY 306 (468)
T ss_dssp ----------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred CC-------ccccch------HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHH
Confidence 00 000000 00111222333334567899999 22333334444443 22345555554433111
Q ss_pred --h----CCCCceeeCCCCCHhHHHHHHhh
Q 036738 338 --T----NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 338 --~----~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
. ......+.+++.+.++..++|..
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~ 336 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQG 336 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHH
Confidence 1 01224689999999999999874
No 49
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.57 E-value=3.7e-07 Score=83.40 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=85.0
Q ss_pred cccccccccchhHHHHHHhhcCC--CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHH
Q 036738 185 KILKKLVGIDSRLEELRFLMDKG--PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
.....++|++..+..+..++... .......+.|+|++|+|||+||+.+++.....|- .+. .... . ....
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~~-~~~~---~-~~~~- 96 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TTA-APMI---E-KSGD- 96 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EEE-GGGC---C-SHHH-
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eec-chhc---c-chhH-
Confidence 34567999999999998887642 1134456899999999999999999987654321 111 1000 0 1111
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH--HHHHHHhccCCCC------------------CC
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS--KQLEYLAGKHGWY------------------GS 322 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~ 322 (364)
+ ...+.. ..+..+|+||+++.. .....+...+... .+
T Consensus 97 ~---------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 97 L---------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp H---------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred H---------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 1 111111 235578999999643 3333333222111 01
Q ss_pred CcEEEEEeCChhhhh-h--CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 323 GSRIIITSRDEGLLK-T--NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 323 gs~iliTtr~~~v~~-~--~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+..+|.+|....... . -.....+.+++++.++..+++.+.
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~ 196 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKA 196 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHH
Confidence 245666655432111 1 123468999999999999888654
No 50
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.56 E-value=2.2e-06 Score=77.68 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=82.4
Q ss_pred ccccccccchhHHHHHHhhcC---------CCCCCceEEEEEccCccchHHHHHHHHHHhh-cccccceEEeeccccccc
Q 036738 186 ILKKLVGIDSRLEELRFLMDK---------GPSADVRMIGICGMGGLGKTTLARVIYDLIS-HEFEGSSFLANVREKSER 255 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~ 255 (364)
.-..+.|.+..++.|.+.+.. ......+.+.|+|++|+|||+||+.+++... ..| +.+. .......
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~~ 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVSK 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHhh
Confidence 345678888888877765421 1113446789999999999999999998862 221 1111 1111000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH-------------HHHHHHhccCCC---
Q 036738 256 EGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS-------------KQLEYLAGKHGW--- 319 (364)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--- 319 (364)
. ...........+......++.+|+||+++.. .....++..+..
T Consensus 86 ~--------------------~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 86 W--------------------LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp S--------------------CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred h--------------------hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence 0 0001111111222222457789999999743 112223322211
Q ss_pred CCCCcEEEEEeCChhhhhh---CCCCceeeCCCCCHhHHHHHHhh
Q 036738 320 YGSGSRIIITSRDEGLLKT---NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 320 ~~~gs~iliTtr~~~v~~~---~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
...+..||.||..+..... -.....+.++..+.++..++|..
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~ 190 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKL 190 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHH
T ss_pred cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHH
Confidence 1234455556654422211 02446788999999988888865
No 51
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.53 E-value=1.1e-06 Score=80.84 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=83.7
Q ss_pred ccccccccchhHHHHHHhhcC---------CCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 186 ILKKLVGIDSRLEELRFLMDK---------GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
....++|.+..++.|.+.+.. ......+-+.|+|++|+|||+||+.+++.+...| +.+. .
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~------- 117 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-S------- 117 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-H-------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-H-------
Confidence 446689999988888876521 1112344589999999999999999999874332 1111 1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHH-------------HHHHHhccC---CCC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSK-------------QLEYLAGKH---GWY 320 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~~ 320 (364)
..+. ... ...........+......++.+|+||+++... ....++..+ ...
T Consensus 118 ---~~l~--------~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 118 ---SDLV--------SKW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp ---HHHH--------SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred ---HHHh--------hhh--cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 1110 000 00011111112222234578899999997431 122232222 111
Q ss_pred CCCcEEEEEeCChhhhhh---CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 GSGSRIIITSRDEGLLKT---NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 ~~gs~iliTtr~~~v~~~---~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..||.||..+..+.. -.....+.++..+.++..++|..+
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~ 229 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN 229 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHH
Confidence 235555556654422111 024567889999999988888653
No 52
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.52 E-value=5.6e-07 Score=92.42 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=42.7
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+...+.++||+.++..+...|.... .+.+.|+|++|+|||+||+.+++.+..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~---~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSS---CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4455679999999999999887632 334789999999999999999998743
No 53
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.51 E-value=1.4e-06 Score=81.28 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=41.6
Q ss_pred ccccccccccchhHHHHHHhhcC-----C----CCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDK-----G----PSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~-----~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+.....++|.+..++.|..++.. . .....+.+.|+|++|+|||+||+.++.....
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 34456799999999999887621 0 0123467899999999999999999987643
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.51 E-value=1.6e-06 Score=87.98 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=88.3
Q ss_pred cccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc------cccceEEeeccccccccCC
Q 036738 185 KILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE------FEGSSFLANVREKSEREGG 258 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~ 258 (364)
.....++||+.++..+.+.|... ....+.|+|++|+|||+||+.+++.+... ....++........
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~---~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~----- 254 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL----- 254 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCCCCccCCHHHHHHHHHHHhcc---CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-----
Confidence 44567999999999999998763 34567899999999999999999886432 11222221111000
Q ss_pred HHHHHHHHHHHHhcCCCCCccChhhhHHH-HHHhcCCCeEEEEEecCCCH----------HH-HHHHhccCCCCCCCcEE
Q 036738 259 VISFQRQLVSQLLKLTDNRIWNEDDGINI-LGSRLQHKKVLLVIDDVIDS----------KQ-LEYLAGKHGWYGSGSRI 326 (364)
Q Consensus 259 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----------~~-~~~l~~~~~~~~~gs~i 326 (364)
.+. ......+..... +......++.+|+|||++.. .. ...+.+.+. ....++
T Consensus 255 ------------~~~--~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~ 318 (758)
T 1r6b_X 255 ------------AGT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRV 318 (758)
T ss_dssp ------------CCC--CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEE
T ss_pred ------------ccc--cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEE
Confidence 000 011122222222 22333446789999999743 22 223434332 234566
Q ss_pred EEEeCChhhhhhC-------CCCceeeCCCCCHhHHHHHHhh
Q 036738 327 IITSRDEGLLKTN-------RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 327 liTtr~~~v~~~~-------~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
|.+|......... .....+.+++.+.++..+++..
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~ 360 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING 360 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHH
Confidence 6666544321111 1123689999999999888864
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.49 E-value=3.6e-07 Score=72.75 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 189 KLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.++|+...+..+.+.+..-. .....|.|+|++|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999888888764322 223457899999999999999998764
No 56
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.49 E-value=8.8e-07 Score=79.31 Aligned_cols=55 Identities=24% Similarity=0.180 Sum_probs=41.5
Q ss_pred ccccccccccchhHHHHHHhhcCC---------CCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKG---------PSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+.....++|.+..++.|.+.+... -....+.+.|+|++|+|||+||+.++.....
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 334567899999999888766320 0123567899999999999999999987643
No 57
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.48 E-value=3.5e-06 Score=76.84 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=84.3
Q ss_pred chhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHH---
Q 036738 194 DSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQL--- 270 (364)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--- 270 (364)
+...+.+...+..+ .-.+.+.++|++|+|||++|+.+++.+........ ... +.......+....
T Consensus 8 ~~~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~---------~~c-~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 8 RPDFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH---------KSC-GHCRGCQLMQAGTHPD 75 (334)
T ss_dssp HHHHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT---------BCC-SCSHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCC---------CCC-CCCHHHHHHhcCCCCC
Confidence 34455566666543 33457899999999999999999998754321100 000 0000000000000
Q ss_pred -hcCCC---CCccChhhhHHHHHHhc-----CCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh
Q 036738 271 -LKLTD---NRIWNEDDGINILGSRL-----QHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT 338 (364)
Q Consensus 271 -~~~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~ 338 (364)
....+ ......++... +.+.+ .+++-++|+|+++. ......++..+.....++.+|++|.++. +...
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred EEEEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 00000 00011111111 21221 34677999999974 4555666665654456777787777653 2221
Q ss_pred -CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 339 -NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 339 -~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
......+++++++.++..+.+.+.
T Consensus 155 i~SRc~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 155 LRSRCRLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred HhhcceeeeCCCCCHHHHHHHHHHh
Confidence 123468899999999998887654
No 58
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.46 E-value=3.5e-06 Score=79.89 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=86.8
Q ss_pred ccccccccccchhHHHHHHhhcC---------CCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDK---------GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSE 254 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 254 (364)
+.....++|.+...+.|.+.+.. ......+.+.|+|++|+|||+||+.++..... ..|+.. ..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v----~~ 201 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSI----SS 201 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEE----CC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEE----eH
Confidence 33456789999988888876521 11134567899999999999999999987621 122220 00
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH-------------HHHHHHhccCCCC-
Q 036738 255 REGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS-------------KQLEYLAGKHGWY- 320 (364)
Q Consensus 255 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~- 320 (364)
. .+. ....+.. . ......+......++.+|+||+++.. .....++..+...
T Consensus 202 -~-~l~-------~~~~g~~---~---~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 202 -S-DLV-------SKWLGES---E---KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -C-----------------C---C---CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred -H-HHH-------hhhcchH---H---HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 0 110 0100110 0 11112222222456789999999753 2234444444321
Q ss_pred --CCCcEEEEEeCChhhhhh---CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 --GSGSRIIITSRDEGLLKT---NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 --~~gs~iliTtr~~~v~~~---~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..||.||..+..+.. -.....+.++..+.++..++|..+
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~ 313 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLH 313 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHH
Confidence 245566667755432211 123457889888988888888653
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.44 E-value=8.8e-07 Score=84.78 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=85.9
Q ss_pred cccccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 187 LKKLVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
...++|.+..+++|.+++... ......-+.|+|++|+|||+||+.+++.....| +.+. ........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chHhhhhh
Confidence 356899999999988876431 013455689999999999999999998763322 1111 11100000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH-------------HHHHHHhccCC--CCC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS-------------KQLEYLAGKHG--WYG 321 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~--~~~ 321 (364)
...........+.....+++.+|+||+++.. .....|+..+. ...
T Consensus 279 --------------------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 279 --------------------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred --------------------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 0000111122333344566789999998311 11222322221 112
Q ss_pred CCcEEEEEeCChhh-----hhhCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 322 SGSRIIITSRDEGL-----LKTNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 322 ~gs~iliTtr~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.+..||.||..+.. .........+.++..+.++-.++|..+
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~ 384 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHH
Confidence 34455556655432 121234457899999999999998754
No 60
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.4e-06 Score=79.71 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=86.2
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEeeccccccccCCHHHH
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLANVREKSEREGGVISF 262 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~ 262 (364)
|.....++|.+..+..|...+..+. .+.+.++|++|+||||+|+.+++.+... +...+.-.+ .+... +...
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~---~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~~-~~~~- 92 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGK---LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDR-GIDV- 92 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC---CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCC-SHHH-
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---Ccccc-cHHH-
Confidence 3344567899888999988887642 2238999999999999999999986542 211111111 11111 1111
Q ss_pred HHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-
Q 036738 263 QRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID--SKQLEYLAGKHGWYGSGSRIIITSRDEG-LLKT- 338 (364)
Q Consensus 263 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iliTtr~~~-v~~~- 338 (364)
.+..+....... ..+.+.+-++|+|+++. ....+.+...+......+++|++|.... +...
T Consensus 93 ir~~i~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 93 VRNQIKDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp HHTHHHHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 111111111000 00123467899999863 3344444433332245667777765432 1111
Q ss_pred CCCCceeeCCCCCHhHHHHHHhh
Q 036738 339 NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 339 ~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
......+.+.+++.++..+.+..
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIAN 180 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHH
T ss_pred HhhceeEeccCCCHHHHHHHHHH
Confidence 11234788999999988777653
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.42 E-value=2e-06 Score=87.26 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=83.5
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc------ccceEEeeccccccccC
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF------EGSSFLANVREKSEREG 257 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~ 257 (364)
+...+.++||+.++..+...|... ...-+.|+|++|+|||++|+.+++.+.... ...++..
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~---~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~---------- 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL---------- 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred hCCCCCccCchHHHHHHHHHHhCC---CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe----------
Confidence 344567999999999999998763 234578999999999999999999864321 1111111
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhh
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLK 337 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~ 337 (364)
+. ..... ..........+......++.+|++| ...+....+.+.+. ....++|.+|.......
T Consensus 243 ~~-------g~~~~------G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 243 DM-------GTKYR------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRK 305 (758)
T ss_dssp -----------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHH
T ss_pred cc-------ccccc------chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHH
Confidence 01 00000 0011122233333445678899999 22333334444443 23456666665443211
Q ss_pred ---hC----CCCceeeCCCCCHhHHHHHHhh
Q 036738 338 ---TN----RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 338 ---~~----~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.. .....+.+++.+.++..++|..
T Consensus 306 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~ 336 (758)
T 3pxi_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQG 336 (758)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence 00 0124689999999999999864
No 62
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.38 E-value=4.3e-06 Score=73.18 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=80.6
Q ss_pred ccccccccchhHHHHHHhhc---CC------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 186 ILKKLVGIDSRLEELRFLMD---KG------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~---~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
....++|.+..++.+.+.+. .. .....+-+.|+|++|+||||||+.+++.....| +.+. ........
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~~ 85 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEMF 85 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHHh
Confidence 44678888887777665432 11 002234588999999999999999998764332 2221 11100000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCC-
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGW- 319 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~- 319 (364)
...........+.......+.++++|+++.. ..+..++..+..
T Consensus 86 --------------------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 86 --------------------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp --------------------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred --------------------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 0001111122233333456789999998311 122333322211
Q ss_pred -CCCCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhh
Q 036738 320 -YGSGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 320 -~~~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
...+..||.||..+..... ......+.++..+.++-.+++..
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~ 193 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 193 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHH
Confidence 1234456666655432211 12345778888888888777754
No 63
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=3.4e-06 Score=77.91 Aligned_cols=150 Identities=15% Similarity=0.240 Sum_probs=86.1
Q ss_pred cccccccchhHHHHHHhhcC----C------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 187 LKKLVGIDSRLEELRFLMDK----G------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~----~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
-...-|.+..+++|.+.+.. . .-..++-+.++||||+|||.||+++++.....|- .+. ........
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RVS-GAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EEE-GGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EEE-hHHhhccc
Confidence 35567888888888765421 0 1144567899999999999999999998765532 111 11111111
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCC
Q 036738 257 -GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGW 319 (364)
Q Consensus 257 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~ 319 (364)
......++ ..+...-...+++|+||+++.. ..+..++..+..
T Consensus 223 vGese~~vr---------------------~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 223 IGEGSRMVR---------------------ELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp TTHHHHHHH---------------------HHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred cchHHHHHH---------------------HHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 00111111 1122223457899999998632 123334333322
Q ss_pred C--CCCcEEEEEeCChhhhh-----hCCCCceeeCCCCCHhHHHHHHhh
Q 036738 320 Y--GSGSRIIITSRDEGLLK-----TNRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 320 ~--~~gs~iliTtr~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+ ..+..||.||-.++.++ .-..+..++++..+.++..++|..
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHH
Confidence 2 23444555665544332 123567889999999888888864
No 64
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=2.5e-06 Score=76.61 Aligned_cols=145 Identities=14% Similarity=0.053 Sum_probs=85.8
Q ss_pred ccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh---cccccceEEeeccccccccCCHHHHHHHHHH
Q 036738 192 GIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS---HEFEGSSFLANVREKSEREGGVISFQRQLVS 268 (364)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (364)
|-+..++.|...+..+ . .+...++|++|+||||+|+.+++... ..++....+. .......+ ...+.+..
T Consensus 1 g~~~~~~~L~~~i~~~--~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~i-d~ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGI-DDIRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC--S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC--C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCH-HHHHHHHH
Confidence 4455667777777664 2 67889999999999999999997532 1122222222 11001011 11223333
Q ss_pred HHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCCh-hhhhhCCCCcee
Q 036738 269 QLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDE-GLLKTNRVDEVY 345 (364)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~-~v~~~~~~~~~~ 345 (364)
..... + ..+++-++|+|+++ +....+.|+..+....+.+.+|++|.++ .+....... .+
T Consensus 73 ~~~~~-p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 73 FLNYS-P----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHTSC-C----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHhhc-c----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 32111 0 12456789999997 4455666666555445677888877654 333333333 89
Q ss_pred eCCCCCHhHHHHHHhhc
Q 036738 346 KPNGLNYNEALQLFNMK 362 (364)
Q Consensus 346 ~l~~L~~~ea~~L~~~~ 362 (364)
++.++++++..+.+.+.
T Consensus 135 ~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp EEECCCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999999999888653
No 65
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=5.2e-06 Score=77.81 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=86.2
Q ss_pred cccccccchhHHHHHHhhcC----C------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc
Q 036738 187 LKKLVGIDSRLEELRFLMDK----G------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE 256 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~----~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 256 (364)
-..+.|.+..+++|.+.+.. . .-..++-+.++||+|+|||+||+++++.....|- ...........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~----~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI----FSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEehhhhcccc
Confidence 34567888888887765421 0 1145678999999999999999999998765432 11111111111
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCC
Q 036738 257 -GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGW 319 (364)
Q Consensus 257 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~ 319 (364)
......+ ...+...-...+++|+||+++.. ..+..++..+..
T Consensus 256 ~Gese~~i---------------------r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 256 IGESARII---------------------REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp SSHHHHHH---------------------HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred chHHHHHH---------------------HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 0011111 11122233467899999999631 113334333321
Q ss_pred C--CCCcEEEEEeCChhhhhhC-----CCCceeeCCCCCHhHHHHHHhh
Q 036738 320 Y--GSGSRIIITSRDEGLLKTN-----RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 320 ~--~~gs~iliTtr~~~v~~~~-----~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
+ ..+..||.||-.++.++.. ..+..++++..+.++..++|..
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI 363 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHH
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHH
Confidence 1 2345666677655443321 1355788988888888888864
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.35 E-value=5.4e-06 Score=74.57 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=38.4
Q ss_pred ccccccchhHHHHHHhhcCC------CCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 188 KKLVGIDSRLEELRFLMDKG------PSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..++|.+..++.+...+... .......+.|+|++|+|||++|+.+++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 35778888877776655431 11234579999999999999999999987543
No 67
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=5.5e-06 Score=77.59 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=86.1
Q ss_pred ccccccccchhHHHHHHhhc----CC------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccc
Q 036738 186 ILKKLVGIDSRLEELRFLMD----KG------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSER 255 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~----~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 255 (364)
.-..+.|.+...++|.+.+. .. .-..++-|.++||||+|||.||+++++.....|- ..........
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~----~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL----KLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE----EEehhhhhhc
Confidence 34567888888888876432 11 1145678999999999999999999998765432 1111111111
Q ss_pred c-CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCC
Q 036738 256 E-GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHG 318 (364)
Q Consensus 256 ~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~ 318 (364)
. ......++.+ +...-...+++|++|+++.. ..+..++..+.
T Consensus 255 ~vGese~~ir~l---------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 255 YIGEGAKLVRDA---------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp CSSHHHHHHHHH---------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHH---------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 1 0111111111 12222346899999998521 01233444443
Q ss_pred CCC--CCcEEEEEeCChhhhhhC-----CCCceeeCCCCCHhHHHHHHhh
Q 036738 319 WYG--SGSRIIITSRDEGLLKTN-----RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 319 ~~~--~gs~iliTtr~~~v~~~~-----~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
.+. .+..||.||..++.++.. ..+..++++..+.++..++|..
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQI 363 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHH
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHH
Confidence 222 234455576655443321 2355789998898888888864
No 68
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.28 E-value=8.5e-07 Score=78.15 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=38.5
Q ss_pred ccccccccchhHHHHHHhhcCC---------CCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 186 ILKKLVGIDSRLEELRFLMDKG---------PSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....++|.+..++.+.+.+..- .....+-+.|+|++|+|||+||+.+++.....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3456889988888777755310 00122347899999999999999999986543
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.28 E-value=1.7e-06 Score=76.20 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=34.2
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..++|....+..+.+.+..-. .....+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA-PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT-TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 458899988888776554311 2234578999999999999999998654
No 70
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.27 E-value=7.6e-06 Score=77.80 Aligned_cols=151 Identities=18% Similarity=0.236 Sum_probs=83.6
Q ss_pred cccccccchhHHHHHHhhc---CC------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccC
Q 036738 187 LKKLVGIDSRLEELRFLMD---KG------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG 257 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~---~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 257 (364)
...++|.+..++++.+.+. .. +....+-+.|+|++|+|||+||+.++......| +.+. .........
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh
Confidence 4568888887777665432 11 112234588999999999999999998764332 1121 111111110
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCCC-
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGWY- 320 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~- 320 (364)
+. ........+.......+.+|+||+++.. ..+..++..+..+
T Consensus 91 g~--------------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 91 GV--------------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp TH--------------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred cc--------------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 00 0111122233444567899999999531 1233333222111
Q ss_pred -CCCcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhh
Q 036738 321 -GSGSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 321 -~~gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
..+..||.||..++.+.. ......+.+++.+.++-.++|..
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~ 197 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEI 197 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHH
Confidence 235566667766644321 12345788998888888777754
No 71
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.7e-05 Score=74.26 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=85.4
Q ss_pred ccccccchhHHHHHHhhcC----------CCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc-
Q 036738 188 KKLVGIDSRLEELRFLMDK----------GPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE- 256 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~- 256 (364)
..+.|.+..+++|.+.+.. ..-..++-|.++|++|+|||+||+++++.....|- ...........
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi----~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI----RVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE----EEEhHHhhcccC
Confidence 4678888888888765321 01145678999999999999999999998765432 11111111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCCC
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGWY 320 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 320 (364)
......+ ...+.......+++|++|+++.. ..+..++..+...
T Consensus 285 Gesek~i---------------------r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 285 GEGARMV---------------------RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp SHHHHHH---------------------HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred CHHHHHH---------------------HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 0011111 11222233567899999998632 0122233222211
Q ss_pred --CCCcEEEEEeCChhhhh-----hCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 321 --GSGSRIIITSRDEGLLK-----TNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 321 --~~gs~iliTtr~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
..+..||.||-.++.++ .-..+..++++..+.++..++|..+
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~ 392 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIH 392 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHH
Confidence 22334455665443322 1235678899999999888888643
No 72
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.23 E-value=6.6e-06 Score=73.80 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=37.9
Q ss_pred ccccccchhHHHHHHhhcCC-----------CCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 188 KKLVGIDSRLEELRFLMDKG-----------PSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..++|++..++.+...+... .......+.|+|++|+|||+||+.+++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45788888888887665430 0023456889999999999999999988743
No 73
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.22 E-value=2.3e-06 Score=68.44 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=24.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...++|+|++|+|||||++.++..+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999998754
No 74
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.22 E-value=5.3e-06 Score=69.69 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=39.5
Q ss_pred ccccccccch----hHHHHHHhhcCCCCC-CceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 186 ILKKLVGIDS----RLEELRFLMDKGPSA-DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 186 ~~~~~~Gr~~----~~~~l~~~L~~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
...+|++... .++.+.+++...... ....+.|+|++|+|||+||+.+++.........+++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3455665442 344555555433211 2267899999999999999999998765533444443
No 75
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.3e-05 Score=74.45 Aligned_cols=149 Identities=16% Similarity=0.203 Sum_probs=83.7
Q ss_pred ccccccchhHHHHHHhhcC----C------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeecccccccc-
Q 036738 188 KKLVGIDSRLEELRFLMDK----G------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSERE- 256 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~----~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~- 256 (364)
..+-|.+...++|.+.+.. . .-..++-|.++||+|+|||.||+++++.....|- ...........
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEEHHHhhhccC
Confidence 4567888888888764321 1 1145577999999999999999999998765432 11111111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCC-
Q 036738 257 GGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGW- 319 (364)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~- 319 (364)
......++. .+...-...+++|+||+++.. ..+..++..+..
T Consensus 258 Gesek~ir~---------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 258 GDGPRLCRQ---------------------IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp SHHHHHHHH---------------------HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHH---------------------HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 011111111 122223456899999998631 122233322211
Q ss_pred -CCCCcEEEEEeCChhhhhhC-----CCCceeeCCCCCHhHHHHHHhh
Q 036738 320 -YGSGSRIIITSRDEGLLKTN-----RVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 320 -~~~gs~iliTtr~~~v~~~~-----~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
...+..||.||-.++.++.. ..+..++++.-+.++..++|..
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~ 364 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGI 364 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHH
Confidence 12344555677555444321 2345688988888888888864
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.15 E-value=9e-06 Score=72.65 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..++.+.|+|++|+|||+||+.+++.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45567899999999999999999998843
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.14 E-value=8.1e-06 Score=73.34 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=36.6
Q ss_pred cccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 189 KLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.++|+...+..+.+.+..-. .....|.|+|++|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 57899888888877665422 223457899999999999999999864
No 78
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.8e-05 Score=74.06 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=39.4
Q ss_pred ccccccchhHHHHHHhhcC----C------CCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 188 KKLVGIDSRLEELRFLMDK----G------PSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~----~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....|.+...++|.+.+.. . .-..++-+.++||+|+|||+||+++++.....
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567888888888765421 0 11456679999999999999999999987654
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.09 E-value=1.9e-05 Score=80.01 Aligned_cols=147 Identities=15% Similarity=0.181 Sum_probs=81.8
Q ss_pred ccccccchhHHHHHHhhcCCC------CCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHH
Q 036738 188 KKLVGIDSRLEELRFLMDKGP------SADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVIS 261 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 261 (364)
..++|.+..+..+...+.... ......+.++|++|+|||+||+.+++.+...-...+.+. +..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 467899988877776554211 122347899999999999999999998743322223332 22222222010
Q ss_pred HHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCC--HHHHHHHhccCCC-----------CCCCcEEEE
Q 036738 262 FQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVID--SKQLEYLAGKHGW-----------YGSGSRIII 328 (364)
Q Consensus 262 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~-----------~~~gs~ili 328 (364)
.......++. ....+|+||+++. ......|+..+.. ....++||+
T Consensus 568 -------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 568 -------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 0111122222 2334899999963 3444444332211 113467888
Q ss_pred EeCC-----------------hhhhhhCCCCceeeCCCCCHhHHHHHHhh
Q 036738 329 TSRD-----------------EGLLKTNRVDEVYKPNGLNYNEALQLFNM 361 (364)
Q Consensus 329 Ttr~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~L~~~ 361 (364)
||.. +.+... .+.++.+++|+.++-.+++..
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHH
Confidence 8863 112222 346889999999998888754
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.08 E-value=1.5e-06 Score=69.00 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=33.3
Q ss_pred cccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 189 KLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.++|+...+.++.+.+..-. .....|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 57899888888877764311 222347899999999999999987654
No 81
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.05 E-value=1.6e-05 Score=67.54 Aligned_cols=35 Identities=31% Similarity=0.168 Sum_probs=26.6
Q ss_pred HHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHH
Q 036738 199 ELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 199 ~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
.|..++..+- ....++.|.|++|+|||||+..++.
T Consensus 8 ~LD~~l~Ggi-~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGF-APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSB-CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCC-cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4455554222 4456899999999999999999988
No 82
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.03 E-value=4.9e-05 Score=72.69 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=81.4
Q ss_pred cccccccccchhHHHHHHhhc---CC------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccc
Q 036738 185 KILKKLVGIDSRLEELRFLMD---KG------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSER 255 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~---~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 255 (364)
.....++|.+..+.++.++.. .. +..-.+-+.|+|++|+|||+||+.++...... .+.+. .......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHh
Confidence 345678898877776655432 11 00122348999999999999999999876422 22222 1111111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcC----CCeEEEEEecCCCH----------------HHHHHHhc
Q 036738 256 EGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQ----HKKVLLVIDDVIDS----------------KQLEYLAG 315 (364)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~----------------~~~~~l~~ 315 (364)
. .......++..++ ..+.++++||++.. ..+..++.
T Consensus 104 ~------------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 104 F------------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp C------------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred h------------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 1 0011111222222 24579999998421 12333433
Q ss_pred cCCCC--CCCcEEEEEeCChhhhhhC-----CCCceeeCCCCCHhHHHHHHhhc
Q 036738 316 KHGWY--GSGSRIIITSRDEGLLKTN-----RVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 316 ~~~~~--~~gs~iliTtr~~~v~~~~-----~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
.+... .....++.+|..++.+... ..+..+.++..+.++-.++|..+
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~ 213 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 213 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHT
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHH
Confidence 33211 1234455566666544321 23457889999999888888654
No 83
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.98 E-value=4e-05 Score=77.08 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=85.3
Q ss_pred ccccccchhHHHHHHhhc----CC------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccC
Q 036738 188 KKLVGIDSRLEELRFLMD----KG------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG 257 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~----~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 257 (364)
..+.|.+..+++|.+.+. .. .-..++-|.++|++|+|||+||+.+++....+| +..+..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~------- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGP------- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHH-------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhH-------
Confidence 456788888888877542 11 114567899999999999999999998765432 222111
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH-------------HHHHHHhccCCCC--CC
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS-------------KQLEYLAGKHGWY--GS 322 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~ 322 (364)
.+. ... .......+...+.......+++|+||+++.. .....|+..+... ..
T Consensus 273 ---~l~--------sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 273 ---EIM--------SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp ---HHH--------SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred ---Hhh--------ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 000 000 0011112223334445678999999998632 1123333222111 12
Q ss_pred CcEEEEEeCChhhhhh-----CCCCceeeCCCCCHhHHHHHHhhc
Q 036738 323 GSRIIITSRDEGLLKT-----NRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 323 gs~iliTtr~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
+..||.||..++.... ......++++..+.++-.++|..+
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~ 384 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHT
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHH
Confidence 3344456655433222 124567899999999888888653
No 84
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.96 E-value=4.8e-06 Score=62.27 Aligned_cols=73 Identities=7% Similarity=-0.017 Sum_probs=54.9
Q ss_pred CCcccEEEccccccCcccHHHHHHHHHHcCCCeEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecccccCcccHHHHH
Q 036738 11 HWTYDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAIIVFSKNYASSTWCLDELV 90 (364)
Q Consensus 11 ~~~~dvfiSy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~~~~El~ 90 (364)
.++|.+||||+.+| -.+.|...|.+.|+... | ..|+.|+++|+++++....|+||..|+.
T Consensus 2 ~~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 2 TAEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred CceEEEEEecccHh----HHHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 46899999999988 35556666655577543 2 4578899999999999999999999998
Q ss_pred HHHHhhhcCCCeeEEeEE
Q 036738 91 HILDCKNKNAQRMVYPIF 108 (364)
Q Consensus 91 ~~~~~~~~~~~~~viPv~ 108 (364)
.+.+.++ . ++-|.
T Consensus 62 ~A~~~gk----p-IigV~ 74 (111)
T 1eiw_A 62 LARKSSK----P-IITVR 74 (111)
T ss_dssp HHTTTTC----C-EEEEC
T ss_pred HHHHcCC----C-EEEEE
Confidence 6665443 2 56654
No 85
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.95 E-value=5.1e-05 Score=67.10 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=35.8
Q ss_pred cccccccccchhHHHHHHhhcCC---------CCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 185 KILKKLVGIDSRLEELRFLMDKG---------PSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~---------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|.+....++.++...- +-.-.+-+.|+|++|+|||||++.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 34566888887766665543210 001112389999999999999999998765
No 86
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.94 E-value=7.6e-05 Score=64.96 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=33.5
Q ss_pred cccccccchhHHHHHHhhcC---------CCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 187 LKKLVGIDSRLEELRFLMDK---------GPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~---------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...++|.+....++.++... -+-.-.+-+.|+|++|+|||||++.++....
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45677777665555443221 0001122389999999999999999998765
No 87
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.90 E-value=0.00016 Score=63.71 Aligned_cols=122 Identities=14% Similarity=0.101 Sum_probs=66.1
Q ss_pred EEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh-cC
Q 036738 215 IGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR-LQ 293 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~-l~ 293 (364)
++|+|++|+|||||++.++...... .+.+.. ...... ..... . .....+.+. ..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~g-~~l~~~--~~~~~-~------------------~~i~~vf~~a~~ 101 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVKG-PELLNM--YVGES-E------------------RAVRQVFQRAKN 101 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEET-TTTCSS--TTHHH-H------------------HHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEEc-HHHHhh--hhhHH-H------------------HHHHHHHHHHHh
Confidence 8999999999999999999876542 222221 111000 00000 0 001111111 13
Q ss_pred CCeEEEEEecCCCH-------------HHHHHHhccCCC--CCCCcEEEEEeCChhhhhhC-----CCCceeeCCCCCHh
Q 036738 294 HKKVLLVIDDVIDS-------------KQLEYLAGKHGW--YGSGSRIIITSRDEGLLKTN-----RVDEVYKPNGLNYN 353 (364)
Q Consensus 294 ~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~gs~iliTtr~~~v~~~~-----~~~~~~~l~~L~~~ 353 (364)
..+.++++|+++.. .....+...+.. .....-++.+|..+.+++.. ..+..+.++..+.+
T Consensus 102 ~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181 (274)
T ss_dssp TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHH
T ss_pred cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHH
Confidence 45678999998632 112222222211 11234455577776655431 34667889999999
Q ss_pred HHHHHHhh
Q 036738 354 EALQLFNM 361 (364)
Q Consensus 354 ea~~L~~~ 361 (364)
+-.++|..
T Consensus 182 ~r~~il~~ 189 (274)
T 2x8a_A 182 DRLAILKT 189 (274)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888864
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.90 E-value=6.7e-05 Score=76.31 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=40.7
Q ss_pred cccccccchhHHHHHHhhcC----------CCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 187 LKKLVGIDSRLEELRFLMDK----------GPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++|.+..+++|.+++.. -.-.....+.|+|++|+||||||+.++..+...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 45689999999988887642 011445679999999999999999999876543
No 89
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.84 E-value=5.5e-05 Score=76.67 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=37.4
Q ss_pred ccccccchhHHHHHHhhcCC------CCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 188 KKLVGIDSRLEELRFLMDKG------PSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..++|.+..++.+...+... .......+.++|++|+|||+||+.+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45789888887776654321 112345789999999999999999999873
No 90
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.78 E-value=0.00025 Score=58.18 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=21.8
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.++|+|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 579999999999999999998764
No 91
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.74 E-value=6e-05 Score=73.19 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=35.6
Q ss_pred cccccchhHHHHHHhhcC---CCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 189 KLVGIDSRLEELRFLMDK---GPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 189 ~~~Gr~~~~~~l~~~L~~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+|.+.....+.+.+.. ........+.|+|++|+||||||+.++..+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 467777666666443221 011245689999999999999999999987544
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.72 E-value=9e-05 Score=64.87 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=64.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
....+++|+|++|+|||||++.++..+...+.+.+++.... .......... +........ +.......+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~--------~v~q~~~gl-~~~~l~~~la 92 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS--------IVNQREVGE-DTKSFADALR 92 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS--------EEEEEEBTT-TBSCHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce--------eeeHHHhCC-CHHHHHHHHH
Confidence 34568999999999999999999987655434555443211 0000000000 000000000 1122345566
Q ss_pred HhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhh
Q 036738 290 SRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLL 336 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~ 336 (364)
..+..++-+|++|+..|.+....+.... ..|..|++||.+.+..
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 6666677789999998776655544332 2466788899876543
No 93
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.72 E-value=8e-05 Score=60.75 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.3
Q ss_pred CceEEEEEccCccchHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVI 232 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~ 232 (364)
...+++|+|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999953
No 94
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.72 E-value=9e-05 Score=63.24 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=27.9
Q ss_pred HHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 199 ELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 199 ~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.|...|..+- ....+++|.|++|+|||||++.++....
T Consensus 13 ~LD~~l~ggi-~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 13 SLDKLLGGGI-ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp HHHHHTTSSE-ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHhHhcCCC-CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4444443222 4457999999999999999999997543
No 95
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.68 E-value=4.3e-05 Score=73.11 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=37.2
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+.++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46889999888887776543 3689999999999999999998763
No 96
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.66 E-value=6.2e-05 Score=69.66 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+.|+|++|+|||+||+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998874
No 97
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.64 E-value=9.1e-05 Score=70.41 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=39.3
Q ss_pred cccccccchhHHHHHHhh---cCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 187 LKKLVGIDSRLEELRFLM---DKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L---~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++|.+..++.+..++ .... ...+-+.++|++|+|||+||+.+++.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~-~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKK-MAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCC-CCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 467999998877665543 3322 334568999999999999999999987643
No 98
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.64 E-value=7.6e-05 Score=68.33 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=67.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSR 291 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (364)
..+++|.|++|+|||||++.++..+.......+... ............ ...... ............+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-ed~~e~~~~~~~--------~~v~q~-~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-EDPIEFVHESKK--------CLVNQR-EVHRDTLGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSS--------SEEEEE-EBTTTBSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-cCcHHhhhhccc--------cceeee-eeccccCCHHHHHHHH
Confidence 348999999999999999999987655433332221 000000000000 000000 0001112334578888
Q ss_pred cCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh
Q 036738 292 LQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 292 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~ 338 (364)
|...+-+|++|+..+.+.++.+.... ..|..||+|+...+....
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence 89999999999999888777655442 246679999998765543
No 99
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.63 E-value=0.00017 Score=62.08 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=23.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|+|++|+|||||++.++..+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445899999999999999999987553
No 100
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.63 E-value=8.9e-05 Score=63.28 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=23.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...+++|.|++|+|||||++.++.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999976543
No 101
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.63 E-value=0.00038 Score=71.41 Aligned_cols=51 Identities=24% Similarity=0.396 Sum_probs=38.2
Q ss_pred ccccccchhHHHHHHhhcCC------CCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 188 KKLVGIDSRLEELRFLMDKG------PSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..++|.+..+..+...+... .......+.|+|++|+|||+||+.+++.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35789998888876665321 1123357899999999999999999998744
No 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.60 E-value=3.3e-05 Score=66.87 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....+++|.|++|+|||||++.++..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999843
No 103
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.55 E-value=0.00032 Score=64.71 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILG 289 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 289 (364)
....+++|+|++|+|||||++.++..+.....+.+.+... ........... +...... ..+.......++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~e~~~~~~~~--------~v~Q~~~-g~~~~~~~~~l~ 203 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKS--------IVNQREV-GEDTKSFADALR 203 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SCCSCCCCSSS--------EEEEEEB-TTTBSCSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cHhhhhccCce--------EEEeeec-CCCHHHHHHHHH
Confidence 3456899999999999999999998765543344433211 00000000000 0000000 001123345677
Q ss_pred HhcCCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhh
Q 036738 290 SRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGL 335 (364)
Q Consensus 290 ~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v 335 (364)
..+...+-+|++|++.+.+.+....... ..|..|+.|+...++
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 7777788899999998877665544332 346668888877553
No 104
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.52 E-value=0.00049 Score=58.89 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=36.3
Q ss_pred HHHHhcCCCeEEEEEecCC---CHHHHHHHhcc-CCCCCCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 287 ILGSRLQHKKVLLVIDDVI---DSKQLEYLAGK-HGWYGSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 287 ~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~-~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
.+...+..++-+|+||+-. |......+... +.....+..||++|++...+.. +++++.+
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l 202 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK--ADKILIL 202 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh--CCEEEEE
Confidence 4556666677799999984 44444444442 2222346789999999776544 3444433
No 105
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.51 E-value=0.00015 Score=65.04 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=33.6
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh-cccccceEE
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS-HEFEGSSFL 246 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~ 246 (364)
.+..+.+++..........+.|+|++|+|||+||..+++... .....+.++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 344555565542212246789999999999999999999866 442233344
No 106
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.50 E-value=0.00064 Score=59.64 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|+|++|+|||||++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999975
No 107
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.49 E-value=0.00018 Score=65.74 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC
Q 036738 197 LEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD 275 (364)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (364)
...|...|. .+- ....++.|.|++|+||||||..++......-..++|+.. .... ... .+..+.....
T Consensus 46 ~~~LD~~Lg~GGi-~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~----E~s~-~~~-----ra~rlgv~~~ 114 (356)
T 3hr8_A 46 SLAIDIATGVGGY-PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA----EHAL-DPV-----YAKNLGVDLK 114 (356)
T ss_dssp CHHHHHHTSSSSE-ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES----SCCC-CHH-----HHHHHTCCGG
T ss_pred CHHHHHHhccCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec----cccc-chH-----HHHHcCCchh
Confidence 455666665 322 456799999999999999999999876543233556651 1111 211 2333322111
Q ss_pred ----CCccChhhhHHHHHHhc-CCCeEEEEEecCC
Q 036738 276 ----NRIWNEDDGINILGSRL-QHKKVLLVIDDVI 305 (364)
Q Consensus 276 ----~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 305 (364)
....+.++....+...+ ..+.-++|+|.+.
T Consensus 115 ~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 115 SLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 11233444444454444 3556699999873
No 108
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.48 E-value=0.00027 Score=61.02 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998743
No 109
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.44 E-value=0.00037 Score=59.91 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44589999999999999999998643
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.41 E-value=0.00021 Score=63.93 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.5
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.+++.|+|++|+|||+||..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999886
No 111
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.40 E-value=0.00078 Score=59.19 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|+|++|+|||||++.++..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344689999999999999999998754
No 112
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.40 E-value=0.00057 Score=59.74 Aligned_cols=25 Identities=44% Similarity=0.498 Sum_probs=22.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..+++|.|++|+|||||++.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998765
No 113
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.39 E-value=0.0001 Score=67.07 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=39.7
Q ss_pred ccccccccchhHHHHHHhhcCC--CCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 186 ILKKLVGIDSRLEELRFLMDKG--PSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....++|.+..++.+...+... .......+.|+|++|+||||||+.++..+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456889888888877666432 0123456899999999999999999998754
No 114
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.37 E-value=0.00044 Score=60.41 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44589999999999999999998754
No 115
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.35 E-value=0.0014 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.0
Q ss_pred eEEEEEccCccchHHHHHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+|+|.|++|+||||+|+.+ .++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 443
No 116
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.35 E-value=8.7e-05 Score=75.48 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=38.9
Q ss_pred cccccccchhHHHHHHhhcCCC----------CCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 187 LKKLVGIDSRLEELRFLMDKGP----------SADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.....|.+...+.|.+.+.... -.....+.++|++|+|||+||+.++..+...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456788888888877654210 1234568899999999999999999987543
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.34 E-value=0.00053 Score=62.56 Aligned_cols=50 Identities=24% Similarity=0.168 Sum_probs=35.0
Q ss_pred HHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 197 LEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
...|..+|. .+- ....++.|.|++|+||||||..++......-..+.|+.
T Consensus 46 ~~~LD~~Lg~GGl-~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445566665 222 45568999999999999999999877654333456665
No 118
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.33 E-value=0.00032 Score=58.69 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=33.6
Q ss_pred cchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 193 IDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
|+..++.|.+.+.........+++|.|++|+|||||++.++..+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4445666666554322245679999999999999999999987643
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.33 E-value=0.00054 Score=58.80 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=28.1
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..|..+|..+- ....++.|.|++|+|||||+..++...
T Consensus 11 ~~LD~~l~ggi-~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 11 KELDKLLQGGI-ETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHHTTTSE-ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHHHHhhcCCC-cCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34555554322 345689999999999999999999853
No 120
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.31 E-value=0.00042 Score=69.74 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=76.9
Q ss_pred ccccccchhHHHHHHhhcCC----------CCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccC
Q 036738 188 KKLVGIDSRLEELRFLMDKG----------PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG 257 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 257 (364)
....|.+...++|.+.+... .-...+-+.++|++|+|||.||++++...... |+. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~----v----- 542 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS----I----- 542 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE----C-----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE----e-----
Confidence 34567777777776654321 11334568899999999999999999876543 222 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhcCCCeEEEEEecCCCH----------------HHHHHHhccCCCCC
Q 036738 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDS----------------KQLEYLAGKHGWYG 321 (364)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~ 321 (364)
.... ++... ...+.......+...-...+++|+||+++.. ..+..|+..+....
T Consensus 543 ~~~~----l~s~~------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 543 KGPE----LLTMW------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp CHHH----HHTTT------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ccch----hhccc------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1111 11111 1112222233334444668899999998531 01333443332222
Q ss_pred C-CcEEEE-EeCChhhhh-----hCCCCceeeCCCCCHhHHHHHHhhc
Q 036738 322 S-GSRIII-TSRDEGLLK-----TNRVDEVYKPNGLNYNEALQLFNMK 362 (364)
Q Consensus 322 ~-gs~ili-Ttr~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~ 362 (364)
. ...++| ||-.++.++ ....+..+.++.-+.++-.++|..+
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHH
Confidence 2 223344 444333222 1134667888877777777777643
No 121
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.30 E-value=0.0014 Score=58.18 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=33.2
Q ss_pred HHHHhcCCCeEEEEEecCC---CHHHHHHHhcc-CCCCCCCcEEEEEeCChhhhhh
Q 036738 287 ILGSRLQHKKVLLVIDDVI---DSKQLEYLAGK-HGWYGSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 287 ~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~-~~~~~~gs~iliTtr~~~v~~~ 338 (364)
.+...+..++-+|+||+-. |......+... +.....|..||++|++...+..
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 4556666677799999974 44444444442 2222346789999999776544
No 122
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.29 E-value=0.00093 Score=57.85 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 123
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.29 E-value=0.001 Score=57.87 Aligned_cols=26 Identities=42% Similarity=0.664 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998754
No 124
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.28 E-value=0.00055 Score=57.88 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.3
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+++|.|++|+|||||++.++..+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999987543
No 125
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.26 E-value=0.00044 Score=61.56 Aligned_cols=97 Identities=9% Similarity=0.098 Sum_probs=53.3
Q ss_pred HHHHHHhhc----CCCCCCceEEEEEccCccchHHHHHHHHHHhhccc--ccceEEeeccccccccCCHHHHHHHHHHHH
Q 036738 197 LEELRFLMD----KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF--EGSSFLANVREKSEREGGVISFQRQLVSQL 270 (364)
Q Consensus 197 ~~~l~~~L~----~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 270 (364)
...|...|. .+- ... ++.|.|++|+||||||..++......+ ..++|+.. .... ... .++.+
T Consensus 11 i~~LD~~LGg~~~GGl-~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~----E~s~-~~~-----ra~~l 78 (333)
T 3io5_A 11 IPMMNIALSGEITGGM-QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS----EFGI-TPA-----YLRSM 78 (333)
T ss_dssp CHHHHHHHHSSTTCCB-CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES----SCCC-CHH-----HHHHT
T ss_pred CHHHHHHhCCCCCCCC-cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec----cchh-hHH-----HHHHh
Confidence 345555665 322 233 789999999999999999987765442 23556651 1111 221 23333
Q ss_pred hcCCC----CCccChhhh-HHHHHHh---cCCCeEEEEEecCC
Q 036738 271 LKLTD----NRIWNEDDG-INILGSR---LQHKKVLLVIDDVI 305 (364)
Q Consensus 271 ~~~~~----~~~~~~~~~-~~~l~~~---l~~~~~LlVlDdv~ 305 (364)
..... ....+.++. ...+... ..++.-|||+|-+.
T Consensus 79 Gvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 79 GVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp TCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECST
T ss_pred CCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEeccc
Confidence 22211 112234444 3333332 35678899999874
No 126
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.26 E-value=0.00035 Score=60.76 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=22.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999987543
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.25 E-value=0.00043 Score=58.85 Aligned_cols=113 Identities=16% Similarity=0.003 Sum_probs=60.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC-CCccChhhhHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD-NRIWNEDDGINIL 288 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l 288 (364)
....++.++|+.|+||||++..++.+...+-..+.++....... .. .+++..+..... .......+....+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~-------~~i~srlG~~~~~~~~~~~~~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SI-------RNIQSRTGTSLPSVEVESAPEILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GC-------SSCCCCCCCSSCCEEESSTHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HH-------HHHHHhcCCCccccccCCHHHHHHHH
Confidence 34568899999999999999999988765533333332111110 00 011222211111 1122233444445
Q ss_pred HHhcCC-CeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 289 GSRLQH-KKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 289 ~~~l~~-~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
.+.+.+ +.-+||+|++. +.++++.+..... .+..||+|-+..
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 544433 45599999995 3445554433221 367899998843
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.25 E-value=0.0003 Score=59.19 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=30.9
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.+++|.+.+.... ....+++|.|++|+|||||++.++..+..
T Consensus 7 ~~~~~~~~~~~~~-~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 7 LCQGVLERLDPRQ-PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHSCTTC-CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3444444444322 55679999999999999999999987763
No 129
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.25 E-value=0.0014 Score=57.37 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999998744
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.24 E-value=0.0042 Score=56.07 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....+++|+|++|+||||+++.++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456799999999999999999999876543
No 131
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.24 E-value=0.00043 Score=62.71 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=62.9
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHHHHhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINILGSRL 292 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (364)
..++|+|++|+|||||++.++..+... .+.+.+......... ...+ .+ .............+...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~--~~~~-------~i----~~~~ggg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK--HHKN-------YT----QLFFGGNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS--SCSS-------EE----EEECBTTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc--cchh-------EE----EEEeCCChhHHHHHHHHh
Confidence 479999999999999999999876543 455555432211100 0000 00 000001223345677778
Q ss_pred CCCeEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCChhhhh
Q 036738 293 QHKKVLLVIDDVIDSKQLEYLAGKHGWYGSGSRIIITSRDEGLLK 337 (364)
Q Consensus 293 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~ 337 (364)
..++-+|++|++.+.+.++.+... . ..+..+|+||+..+...
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~~~-~--~g~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYNVL-C--SGHKGTLTTLHAGSSEE 279 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHHHH-H--TTCCCEEEEEECSSHHH
T ss_pred hhCCCEEEEcCCChHHHHHHHHHH-h--cCCCEEEEEEcccHHHH
Confidence 888889999999876655544432 2 12324788887765433
No 132
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.19 E-value=0.0018 Score=59.85 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....+++|.|++|+|||||++.++..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34568999999999999999999864
No 133
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.18 E-value=0.0015 Score=59.50 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...|..+|..+- ....++.|+|++|+||||||..++...
T Consensus 108 ~~~LD~~LgGGl-~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 108 SQEFDKLLGGGI-ESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CHHHHHHTTSSB-CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred ChhHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555664332 456789999999999999999998764
No 134
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.0015 Score=58.43 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....+++|+|++|+||||++..++..+...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 456799999999999999999999887654
No 135
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.16 E-value=0.00078 Score=59.42 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...++.|.|++|+|||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3458999999999999999999976543
No 136
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.15 E-value=0.0015 Score=59.62 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC--CCCcEEEEEeCChhhhhh
Q 036738 285 INILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY--GSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 285 ~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~--~~gs~iliTtr~~~v~~~ 338 (364)
.-.+...|..++-+|++|+-. |+..-..+...+... ..|..||++|++...+..
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 345777788888899999974 333222222211111 237789999999766544
No 137
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.14 E-value=0.00023 Score=58.08 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.7
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+|.|.|++|+||||+++.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 138
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.14 E-value=0.007 Score=53.80 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.5
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+++++|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999876543
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.14 E-value=0.0063 Score=56.97 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.+.+|.++|++|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999877654
No 140
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.10 E-value=0.00087 Score=56.30 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.0
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+|.|.|+||+||+|+|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 141
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.09 E-value=0.00079 Score=61.77 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=54.9
Q ss_pred HHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC
Q 036738 197 LEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD 275 (364)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (364)
...|..+|. .+- ....++.|.|++|+||||||..++......-..++|+.. .... ... ....+.....
T Consensus 59 ~~~LD~~Lg~GGl-~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~----E~s~-~~~-----~a~~~g~d~~ 127 (366)
T 1xp8_A 59 SLSLDLALGVGGI-PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA----EHAL-DPV-----YARALGVNTD 127 (366)
T ss_dssp CHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES----SCCC-CHH-----HHHHTTCCGG
T ss_pred CHHHHHHhCCCCc-cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC----CCCh-hHH-----HHHHcCCCHH
Confidence 445666665 221 345688999999999999999998776543334566652 1112 111 1222211100
Q ss_pred ----CCccChhhhHHHHHHhcC-CCeEEEEEecC
Q 036738 276 ----NRIWNEDDGINILGSRLQ-HKKVLLVIDDV 304 (364)
Q Consensus 276 ----~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv 304 (364)
....+.++....+....+ .+.-+||+|.+
T Consensus 128 ~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 128 ELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp GCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECT
T ss_pred HceeecCCcHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 112234555555555543 45669999987
No 142
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.08 E-value=0.00027 Score=63.99 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=39.0
Q ss_pred cccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 187 LKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 187 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++|++..+..+...+..+ ..+.|+|++|+|||+||+.+++.+...
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 456899999988887776543 258999999999999999999877543
No 143
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.08 E-value=0.0023 Score=56.96 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...+++|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987763
No 144
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.06 E-value=0.0005 Score=63.15 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=35.2
Q ss_pred ccccchhHHHHHHhhc------------CCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 190 LVGIDSRLEELRFLMD------------KGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 190 ~~Gr~~~~~~l~~~L~------------~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
++|.+..++.+...+. .........+.|+|++|+|||++|+.+++.+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777766552 11112345689999999999999999998874
No 145
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.06 E-value=0.0019 Score=53.44 Aligned_cols=116 Identities=13% Similarity=-0.028 Sum_probs=57.9
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHh--cC-CCCCc-------cChh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLL--KL-TDNRI-------WNED 282 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~-~~~~~-------~~~~ 282 (364)
..|.|++.+|.||||+|-.++-+...+=-.+.++.-.... ... +...++..+.-.+. +. ..... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~-gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPN-GERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCC-HHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCc-cHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4577788888999999999988755442223333212211 111 23333333210000 00 00000 0112
Q ss_pred hhHHHHHHhcC-CCeEEEEEecCC--------CHHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 283 DGINILGSRLQ-HKKVLLVIDDVI--------DSKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 283 ~~~~~l~~~l~-~~~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
......++.+. ++--|||||++. +.+.+-.+... ......||+|+|+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC
Confidence 22344455553 466799999983 22333223222 23567999999995
No 146
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.05 E-value=0.0019 Score=53.78 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999876
No 147
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.05 E-value=0.00066 Score=62.06 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=35.2
Q ss_pred HHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 197 LEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
...|..+|. .+- ....++.|.|++|+||||||..++......-..++|+.
T Consensus 48 ~~~LD~~Lg~GGl-~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445566664 222 34568999999999999999999987654433466665
No 148
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.04 E-value=0.0073 Score=56.46 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=25.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++.++|++|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999876554
No 149
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.00038 Score=56.34 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=22.4
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+|+|.|++|+||||+++.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 150
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.03 E-value=0.0026 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=24.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...++|.|.|+||+||||+|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999876
No 151
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.02 E-value=0.017 Score=54.15 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++|.++|.+|+||||++..++..+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999877654
No 152
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.02 E-value=0.0013 Score=59.78 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34589999999999999999999754
No 153
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.00044 Score=57.73 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....|.|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999999998774
No 154
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.01 E-value=0.0016 Score=60.51 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHH
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|..+|..+- ....++.|.|++|+|||||+..++-.
T Consensus 164 ~~~LD~lLgGGI-~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 164 SKNLDTLLGGGV-ETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CHHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHHhcCCc-CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 445666664332 44568999999999999999987644
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.01 E-value=0.01 Score=55.96 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=35.3
Q ss_pred ccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhccc-ccceEEe
Q 036738 192 GIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF-EGSSFLA 247 (364)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~ 247 (364)
|...-...|..++. +- ....++.|.|.+|+||||||..++....... ..++|+.
T Consensus 182 ~i~tG~~~LD~~lg-Gl-~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 182 GVRTGFKELDQLIG-TL-GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp -CCCSCHHHHHHHC-CC-CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cccCCCHhhhhhcC-Cc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33344555666662 22 4556899999999999999999998765322 2344443
No 156
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.01 E-value=0.0032 Score=61.60 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=23.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|+|++|+|||||++.++..+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999999987543
No 157
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.01 E-value=0.0064 Score=53.84 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=25.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+|+|.|++|+||||||+.++..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56779999999999999999999987654
No 158
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.97 E-value=0.0021 Score=57.96 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=28.5
Q ss_pred HHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 198 EELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 198 ~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..|..+|..+- ....++.|+|++|+||||||..++....
T Consensus 94 ~~LD~~L~GGl-~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 94 QALDGLLAGGI-ETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hhHHHhcCCCC-CCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 34555554322 3456899999999999999999997643
No 159
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00047 Score=56.57 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=23.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998764
No 160
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.95 E-value=0.00057 Score=57.06 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+++|.|++|+|||||++.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999875
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.95 E-value=0.00048 Score=56.85 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=23.9
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhccc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
++++|.|++|+|||||++.++..+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4689999999999999999998765433
No 162
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.93 E-value=0.00054 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+.|.|.|++|+||||+++.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 163
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.92 E-value=0.00053 Score=56.61 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999875
No 164
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.89 E-value=0.00044 Score=56.12 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.5
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+|+|.|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 165
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.88 E-value=0.0012 Score=63.88 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=28.6
Q ss_pred HHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 200 LRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 200 l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
+...|...- ....+++|.|++|+|||||++.++......
T Consensus 270 ld~vL~g~i-~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 270 LDEMCGGGF-FKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp HHHHTTSSE-ESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 444443322 345689999999999999999999876543
No 166
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.87 E-value=0.00056 Score=57.54 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+++|+|++|+|||||++.++..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34568999999999999999999987654
No 167
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.86 E-value=0.0085 Score=53.74 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=33.7
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
-...|..++. +- ....++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 54 G~~~LD~~lg-Gl-~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 54 GFTELDRMTY-GY-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SCHHHHHHHS-SB-CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ChHHHHhhcC-CC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3445555552 22 45568999999999999999999876544323455554
No 168
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.85 E-value=0.0062 Score=59.34 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.3
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
+++.|.|++|+||||++..++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999998876544
No 169
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.84 E-value=0.0055 Score=55.07 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=25.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....+++|+|++|+||||++..++..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 456799999999999999999999877643
No 170
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.84 E-value=0.00059 Score=62.08 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=35.8
Q ss_pred cccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 185 KILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 185 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|.+.....+...+... ....+.|+|++|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~---~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP---GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG---GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCC---CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34456899988666554433321 122389999999999999999998764
No 171
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.83 E-value=0.00085 Score=55.36 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+|.|.|++|+||||+++.++.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998763
No 172
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.82 E-value=0.001 Score=54.77 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.4
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.++.|+|+.|+||||++..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988877654
No 173
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.81 E-value=0.00079 Score=54.37 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+..+|+|.|++|+||||+++.++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998764
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.81 E-value=0.00073 Score=56.38 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.5
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..+++|.|++|+|||||++.++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999864
No 175
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.80 E-value=0.0013 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=23.3
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.+|.|.|++|+||||+++.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999998764
No 176
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.78 E-value=0.019 Score=54.21 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=33.3
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccc-cceEEe
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFE-GSSFLA 247 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 247 (364)
-...|...+.. - ....++.|.|.+|+|||||+..++..+..... .+.|+.
T Consensus 189 G~~~LD~~~gG-l-~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 189 GFTELDRMTSG-F-QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SCHHHHHHHSS-B-CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CcHHHHhhcCC-C-CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34455555522 1 44568999999999999999999987654322 344443
No 177
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.78 E-value=0.0034 Score=60.71 Aligned_cols=126 Identities=16% Similarity=0.244 Sum_probs=63.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc-----cc-cceEEeeccccccccCCHHHHHHHH----------HHHHhcCCC
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE-----FE-GSSFLANVREKSEREGGVISFQRQL----------VSQLLKLTD 275 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~l~~~~~ 275 (364)
..+++|.|++|+|||||++.++...... +. ...|+....... ....+...+... ...+...-.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKAD-YEGTVYELLSKIDASKLNSNFYKTELLKPLG 390 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCC-CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCC-CCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999764432 11 122332211111 111232222211 111111111
Q ss_pred C------Cc--cCh-hhhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC--CCCcEEEEEeCChhhhhh
Q 036738 276 N------RI--WNE-DDGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY--GSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 276 ~------~~--~~~-~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~--~~gs~iliTtr~~~v~~~ 338 (364)
. .. .+- +...-.+...+..++-+|+||+-. |......+...+... ..|..||++|.+...+..
T Consensus 391 l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~ 467 (538)
T 1yqt_A 391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 467 (538)
T ss_dssp CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 0 01 111 222334677777888899999874 333322222221111 136679999998765544
No 178
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.77 E-value=0.00084 Score=58.27 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=24.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+|+|.|++|+||||+|+.++..+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45678999999999999999999987643
No 179
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.76 E-value=0.0015 Score=53.63 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....++.|.|++|+||||+++.++..+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999988754
No 180
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.76 E-value=0.00098 Score=56.00 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=24.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+++|.|++|+|||||++.++..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999998765
No 181
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.76 E-value=0.0063 Score=57.23 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=24.1
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFE 241 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 241 (364)
+.++|+|++|+|||||+..++.....++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 36899999999999999999987655443
No 182
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.75 E-value=0.00085 Score=54.66 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.5
Q ss_pred eEEEEEccCccchHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 183
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.74 E-value=0.00091 Score=55.04 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=23.4
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.+|.|.|++|+||||+++.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998764
No 184
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.74 E-value=0.00063 Score=56.13 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=23.1
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhccc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
+.|.|+||+|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999987754443
No 185
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.74 E-value=0.0011 Score=53.91 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998865
No 186
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.74 E-value=0.00075 Score=55.20 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+.|.|.|++|+||||+++.+++.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998763
No 187
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.73 E-value=0.00072 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..+|+|.|++|+||||||+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 188
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.73 E-value=0.00074 Score=54.97 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.8
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 189
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.72 E-value=0.0033 Score=56.59 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...|..+|..+- ....++.|+|++|+|||+||..++...
T Consensus 84 ~~~LD~~l~GGl-~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGL-ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSE-ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555564322 445789999999999999999998753
No 190
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.71 E-value=0.0065 Score=59.53 Aligned_cols=126 Identities=13% Similarity=0.186 Sum_probs=64.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc-----cc-cceEEeeccccccccCCHHHHH--------------HHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE-----FE-GSSFLANVREKSEREGGVISFQ--------------RQLVSQLL 271 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~l~ 271 (364)
..+++|.|++|+|||||++.++..+... +. ...|+.......... .+...+ .+++..+.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~-tv~e~~~~~~~~~~~~~~~~~~~l~~~~ 460 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG-TVYELLSKIDSSKLNSNFYKTELLKPLG 460 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSS-BHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCC-cHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999754432 11 122332211110111 222221 12222222
Q ss_pred cCCC--CCcc--Ch-hhhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC--CCCcEEEEEeCChhhhhh
Q 036738 272 KLTD--NRIW--NE-DDGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY--GSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 272 ~~~~--~~~~--~~-~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~--~~gs~iliTtr~~~v~~~ 338 (364)
.... .... +- +...-.+...|...+-+|+||+-. |......+...+... ..|..||++|++...+..
T Consensus 461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 1110 1111 11 222335677777888899999874 333322222221111 236679999999766554
No 191
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.70 E-value=0.0065 Score=57.57 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.1
Q ss_pred EEEEEccCccchHHHHHHHHHHhhcc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.+.|.|++|+|||+++..++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 88999999999999999999876544
No 192
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.70 E-value=0.001 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+|+|.|++|+||||+|+.++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 193
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.68 E-value=0.0012 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...|+|.|++|+||||+++.+++++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 194
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.66 E-value=0.0011 Score=57.53 Aligned_cols=25 Identities=28% Similarity=0.133 Sum_probs=22.3
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.++.|.|++|+||||||+.++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999998764
No 195
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.65 E-value=0.0021 Score=57.79 Aligned_cols=48 Identities=29% Similarity=0.454 Sum_probs=33.7
Q ss_pred cccchhHHHHHH-hhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 191 VGIDSRLEELRF-LMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 191 ~Gr~~~~~~l~~-~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+|-...+..+.. ++.......+.+++|.|++|+|||||++.+...+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 444444554444 344433356779999999999999999999887653
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.65 E-value=0.0019 Score=53.81 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=30.7
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
-+..+..++... .....+.|+|++|+||||+|..+++.+..
T Consensus 44 f~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 355666666542 22346899999999999999999998754
No 197
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.64 E-value=0.00092 Score=55.97 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++..+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999998764
No 198
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.64 E-value=0.00091 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.8
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+|.|.|++|+||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 199
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.63 E-value=0.0013 Score=54.30 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998753
No 200
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.63 E-value=0.0042 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.1
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.+..|+|++|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999876544
No 201
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.63 E-value=0.0011 Score=55.13 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.5
Q ss_pred EEEEEccCccchHHHHHHHHHHhhc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.|+|.|++|+||||+++.+++++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999988753
No 202
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.62 E-value=0.0088 Score=54.05 Aligned_cols=41 Identities=15% Similarity=0.021 Sum_probs=29.7
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
-...|..++..- ....++.|.|.+|+||||||..++.....
T Consensus 32 G~~~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 32 GFVQLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp SCHHHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 344555555321 34568999999999999999999987554
No 203
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00085 Score=54.88 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=18.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988764
No 204
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.61 E-value=0.0012 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+++|.|++|+|||||++.++..+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45899999999999999999998763
No 205
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.61 E-value=0.0014 Score=56.62 Aligned_cols=27 Identities=19% Similarity=-0.002 Sum_probs=23.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.....|+|.|++|+||||+|+.+++++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999876
No 206
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.60 E-value=0.001 Score=55.51 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.3
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+.++|+|++|+|||||++.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999988653
No 207
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.60 E-value=0.0014 Score=53.96 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|++|+||||+++.++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999987
No 208
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.60 E-value=0.0012 Score=55.91 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+++|+|++|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456899999999999999999998765
No 209
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.60 E-value=0.0013 Score=54.75 Aligned_cols=27 Identities=11% Similarity=0.356 Sum_probs=23.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..++++|+|++|+|||||++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998754
No 210
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0022 Score=62.81 Aligned_cols=133 Identities=18% Similarity=0.117 Sum_probs=66.0
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccc------cceEEeeccccccccCCHH--------------HHHHHHHHHHhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFE------GSSFLANVREKSEREGGVI--------------SFQRQLVSQLLK 272 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~l~~ 272 (364)
.+++|.|++|+|||||++.++......-. ...++.......... .+. .....++..+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~-tv~e~~~~~~~~~~~~~~~~~~~l~~l~l 457 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPG-TVRQLFFKKIRGQFLNPQFQTDVVKPLRI 457 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCS-BHHHHHHHHCSSTTTSHHHHHHTHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCc-cHHHHHHHHhhcccccHHHHHHHHHHcCC
Confidence 57999999999999999999975432200 112221100000000 111 122233333321
Q ss_pred CC--CCCcc--Ch-hhhHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCC--CCCcEEEEEeCChhhhhhCCCC
Q 036738 273 LT--DNRIW--NE-DDGINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWY--GSGSRIIITSRDEGLLKTNRVD 342 (364)
Q Consensus 273 ~~--~~~~~--~~-~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~--~~gs~iliTtr~~~v~~~~~~~ 342 (364)
.. ..... +- +...-.+...|..++-+|+||+-. |......+...+... ..|..||++|++...+... ++
T Consensus 458 ~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~-aD 536 (608)
T 3j16_B 458 DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL-AD 536 (608)
T ss_dssp TTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-CS
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CC
Confidence 11 11111 12 222345777888888899999874 333222221111110 2366899999987665543 23
Q ss_pred ceeeC
Q 036738 343 EVYKP 347 (364)
Q Consensus 343 ~~~~l 347 (364)
.++-+
T Consensus 537 rvivl 541 (608)
T 3j16_B 537 KVIVF 541 (608)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 44433
No 211
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.59 E-value=0.0015 Score=54.72 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+|.|.|++|+||||+|+.++.++...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3579999999999999999999987653
No 212
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.59 E-value=0.0013 Score=55.88 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.9
Q ss_pred eEEEEEccCccchHHHHHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+|+|.|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 213
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.59 E-value=0.0019 Score=54.16 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+|+|.|++|+||||+++.++.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999987543
No 214
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.58 E-value=0.0022 Score=57.30 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+++|+|++|+|||||++.++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999876643
No 215
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.58 E-value=0.0013 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.8
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+|+|.|++|+||||+|+.++.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998764
No 216
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.57 E-value=0.0017 Score=59.35 Aligned_cols=30 Identities=23% Similarity=0.042 Sum_probs=24.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhccc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
....++|+|++|+|||||++.+++.+...+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 445799999999999999999998765433
No 217
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.57 E-value=0.0013 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.+++|.|++|+|||||++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999863
No 218
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.57 E-value=0.0014 Score=56.59 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+++|.|++|+|||||++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997764
No 219
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.56 E-value=0.0013 Score=55.13 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|+|||||++.++..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999999865
No 220
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.0045 Score=59.76 Aligned_cols=27 Identities=30% Similarity=0.618 Sum_probs=23.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|+|++|+|||||++.++..+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456799999999999999999998754
No 221
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.55 E-value=0.0017 Score=54.01 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....|.|.|++|+||||+|+.++..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445899999999999999999998764
No 222
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.55 E-value=0.0014 Score=55.46 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....|.|.|++|+||||+|+.++.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999998764
No 223
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.55 E-value=0.0012 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.9
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+|.|.|++|+||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 224
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.54 E-value=0.0017 Score=52.10 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=23.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|+.|+|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999877
No 225
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.54 E-value=0.0054 Score=60.02 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=22.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.....++|+|++|+|||||++.++..+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345689999999999999999988644
No 226
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.53 E-value=0.0032 Score=61.62 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....++|+|++|+|||||++.++..+.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 446899999999999999999987543
No 227
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.52 E-value=0.0017 Score=55.97 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|+|||||++.++..+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999865
No 228
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.52 E-value=0.0016 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+|+|.|++|+||||+++.+++++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445689999999999999999999865
No 229
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.50 E-value=0.0016 Score=54.52 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=24.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...+|+|.|++|+||||+++.+++++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999988654
No 230
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.49 E-value=0.0027 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....++.|.|++|+||||||+.++.++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999998865
No 231
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.49 E-value=0.0018 Score=63.73 Aligned_cols=51 Identities=22% Similarity=0.470 Sum_probs=41.5
Q ss_pred ccccccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 184 PKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 184 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
|.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 344567899999998888887653 378999999999999999999976544
No 232
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.49 E-value=0.0016 Score=56.49 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+|+|.|++|+|||||++.++.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345899999999999999999997654
No 233
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.49 E-value=0.0019 Score=57.91 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=25.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+++|.|++|+|||||++.++..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 55679999999999999999999987654
No 234
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.47 E-value=0.0018 Score=53.20 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+|+|.|++|+||||+|+.++.++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 235
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.47 E-value=0.0021 Score=55.12 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=27.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEEe
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
...++.|.|++|+||||||..++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4458999999999999999988776543323445554
No 236
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.47 E-value=0.0019 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 237
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.47 E-value=0.0035 Score=61.56 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.....++|+|++|+|||||++.++..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345689999999999999999998754
No 238
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.46 E-value=0.0024 Score=57.86 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=25.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhccc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
+....+.|+|++|+||||+++.++..+.-.|
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3456789999999999999999998765544
No 239
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.45 E-value=0.0028 Score=51.23 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc-cccce
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE-FEGSS 244 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~ 244 (364)
..++++|.|++|+|||||+..++..+..+ +...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 45689999999999999999999887654 44333
No 240
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.44 E-value=0.0019 Score=53.71 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....+|+|.|+.|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 241
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.43 E-value=0.0015 Score=55.44 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=23.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999999865
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.42 E-value=0.0017 Score=54.15 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEEccCccchHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~ 234 (364)
+|+|.|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 243
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.41 E-value=0.0033 Score=56.25 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=24.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+++|.|++|+|||||++.++..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999998765
No 244
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.40 E-value=0.0022 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=23.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 245
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.39 E-value=0.002 Score=53.03 Aligned_cols=25 Identities=36% Similarity=0.707 Sum_probs=22.5
Q ss_pred EEEEEccCccchHHHHHHHHHHhhc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+|+|.|++|+||||+++.+++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998743
No 246
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.39 E-value=0.03 Score=47.89 Aligned_cols=41 Identities=20% Similarity=0.045 Sum_probs=29.6
Q ss_pred ccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 190 LVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 190 ~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+.=++.+.+.+..++... -+.|+|+.|.|||.+|..++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~------~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK------RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS------EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhCC------CEEEEeCCCCCHHHHHHHHHHHc
Confidence 334556666666666431 27889999999999998888765
No 247
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.39 E-value=0.0021 Score=53.82 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=23.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|+|||||++.++..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 445789999999999999999998754
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.39 E-value=0.0071 Score=53.72 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=24.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999877643
No 249
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.38 E-value=0.0018 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.163 Sum_probs=23.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...|.|.|++|+||||+++.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 250
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.004 Score=60.13 Aligned_cols=27 Identities=44% Similarity=0.752 Sum_probs=23.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+|||||++.++....
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999997544
No 251
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.36 E-value=0.0026 Score=51.89 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++|.|++|+||||+++.++..+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456889999999999999999998764
No 252
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.35 E-value=0.0023 Score=62.90 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|+|++|+|||||++.++..+.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3456899999999999999999987543
No 253
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.35 E-value=0.0058 Score=57.32 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=24.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+|+|+|++|+||||++..++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999876543
No 254
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.33 E-value=0.0021 Score=55.80 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....++.|.|++|+||||+|+.++..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4457899999999999999999998764
No 255
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.33 E-value=0.0019 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=22.5
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...|.|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999865
No 256
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.33 E-value=0.0016 Score=54.67 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.7
Q ss_pred EEEEEccCccchHHHHHHHHHHhhc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
+|+|.|++|+||||+++.++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 257
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.33 E-value=0.0023 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 258
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.32 E-value=0.0021 Score=53.68 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.2
Q ss_pred eEEEEEccCccchHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
.+++|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 259
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0034 Score=55.96 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=25.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+++|+|++|+||||+++.++..+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999987654
No 260
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.29 E-value=0.0022 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=22.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...|+|.|+.|+||||+++.+++++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999876
No 261
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.29 E-value=0.003 Score=53.11 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...++.|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998875
No 262
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.28 E-value=0.0026 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.5
Q ss_pred EEEEEccCccchHHHHHHHHHHhhc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 263
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.28 E-value=0.0021 Score=55.64 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.0
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..|+|.|++|+||||+++.++..+.-
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46999999999999999999987643
No 264
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.25 E-value=0.004 Score=56.85 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=25.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+++|+|++|+|||||++.++..+..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 35679999999999999999999987654
No 265
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.24 E-value=0.0025 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 266
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.23 E-value=0.0023 Score=62.61 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.....++|+|++|+|||||++.++..+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345689999999999999999888644
No 267
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.22 E-value=0.0032 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+-.+|+|.|+.|+||||+++.++..+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999999864
No 268
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.22 E-value=0.0088 Score=61.42 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=62.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHH-hhcccc-----cceEEeecc-ccccccCCH-----------HHHHHHHHHHHhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL-ISHEFE-----GSSFLANVR-EKSEREGGV-----------ISFQRQLVSQLLK 272 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~-~~~~f~-----~~~~~~~~~-~~~~~~~~~-----------~~~~~~l~~~l~~ 272 (364)
...+++|+|++|+|||||++.++.- +. .++ ...|+..-. ...... .. ......++..+..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~-g~~~~~~~~~~~v~q~~~~~~~~l-tv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVD-GFPTQEECRTVYVEHDIDGTHSDT-SVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCST-TCCCTTTSCEEETTCCCCCCCTTS-BHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC-CCccccceeEEEEcccccccccCC-cHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 3458999999999999999999841 21 111 012221000 000000 11 1122333333321
Q ss_pred CC-----CCCccChhh-hHHHHHHhcCCCeEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCChhhhhh
Q 036738 273 LT-----DNRIWNEDD-GINILGSRLQHKKVLLVIDDVI---DSKQLEYLAGKHGWYGSGSRIIITSRDEGLLKT 338 (364)
Q Consensus 273 ~~-----~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~ 338 (364)
.. .....+..+ ..-.|...+..++-+|+||+-. |....+.+...+.. .|..||++|++...+..
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 10 011111222 2334556666677899999874 44444444333332 36689999999766544
No 269
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.21 E-value=0.0044 Score=67.98 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=54.8
Q ss_pred HHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC
Q 036738 197 LEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD 275 (364)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (364)
...|..+|. ..- ...+.+.|+|++|+|||+||.+++.....+=....|+. ..... +... +..+.....
T Consensus 1412 ~~~LD~lLG~GGi-~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~-~~l~-----a~~~G~dl~ 1480 (2050)
T 3cmu_A 1412 SLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHAL-DPIY-----ARKLGVDID 1480 (2050)
T ss_dssp CHHHHHHHSSSSE-ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCC-CHHH-----HHHTTCCTT
T ss_pred CHHHHHhcCCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----ccccc-CHHH-----HHHcCCCch
Confidence 334666665 221 45678999999999999999999887555433455655 12111 1111 222221100
Q ss_pred ----CCccChhhhHHHHHHhc-CCCeEEEEEecCC
Q 036738 276 ----NRIWNEDDGINILGSRL-QHKKVLLVIDDVI 305 (364)
Q Consensus 276 ----~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 305 (364)
......++....++... ..+..+||+|.+.
T Consensus 1481 ~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1481 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp TCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred hceeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 11122234444444443 3577899999983
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.21 E-value=0.0024 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.9
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+++|+|++|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999998764
No 271
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.18 E-value=0.003 Score=53.93 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+++|.|++|+||||+++.++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 272
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.18 E-value=0.0051 Score=57.64 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.+-+.++|++|+||||+|+.++..+...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4568999999999999999999987544
No 273
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.17 E-value=0.0023 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.8
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.+++|+|++|+|||||++.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 478999999999999999999887654
No 274
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.15 E-value=0.0019 Score=55.18 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=17.0
Q ss_pred CceEEEEEccCccchHHHHHHHH-HHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIY-DLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~-~~~ 236 (364)
...+++|+|++|+|||||++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 654
No 275
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.14 E-value=0.0035 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.1
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+|+|.|++|+||||+++.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 276
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.12 E-value=0.037 Score=53.03 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=28.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhccc-ccceEEe
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEF-EGSSFLA 247 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~ 247 (364)
....++.|.|.+|+||||||..++....... ..++|+.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 4556899999999999999999998765542 2345554
No 277
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.12 E-value=0.003 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.9
Q ss_pred eEEEEEccCccchHHHHHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+++|.|++|+|||||++.++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999754
No 278
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.0049 Score=51.90 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=30.4
Q ss_pred hhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 195 SRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+.+...+.. ...+.++|+|.+|+|||||+..++......
T Consensus 16 ~~~~~~~~~~~~---~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE---SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH---HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc---cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344444544432 346789999999999999999999876444
No 279
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.11 E-value=0.0023 Score=55.42 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...+++|.|++|+|||||++.++..+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3458999999999999999999876543
No 280
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.11 E-value=0.0052 Score=51.93 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=29.1
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..+.++..+.. .....|+|+|.+|+|||||+..++.....
T Consensus 25 ~a~~~r~~~~~---~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 25 LADKNRKLLNK---HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHH---TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh---CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 34444444432 34678899999999999999999977543
No 281
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.10 E-value=0.0026 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998643
No 282
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.09 E-value=0.0039 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.089 Sum_probs=23.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998864
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.08 E-value=0.04 Score=52.58 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...++|+|+|.+|+||||++..++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999987654
No 284
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.06 E-value=0.056 Score=45.97 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.4
Q ss_pred eEEEEEccCccchHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIY 233 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~ 233 (364)
..+.|.|+.|+||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 478999999999998766554
No 285
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.06 E-value=0.0029 Score=55.24 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|+|||||++.++..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998754
No 286
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.05 E-value=0.016 Score=54.20 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+|.|+|++|+||||+|+.++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999998754
No 287
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.05 E-value=0.016 Score=54.10 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=27.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcccccceEE
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFL 246 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 246 (364)
...+++|.|++|+|||||++.++..+... .+.+++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~ 200 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILT 200 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEE
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEE
Confidence 44689999999999999999999877654 344443
No 288
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.03 E-value=0.043 Score=53.87 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=27.7
Q ss_pred chhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 194 DSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+.+...+...+. .+.+.|.|++|+||||++..+...+.
T Consensus 152 ~~Q~~Ai~~~l~------~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 152 NWQKVAAAVALT------RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp CHHHHHHHHHHT------BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc------CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344555555553 25799999999999999988877654
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.01 E-value=0.003 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.144 Sum_probs=21.2
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.+++|.|++|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999876
No 290
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.00 E-value=0.0032 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999998754
No 291
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.00 E-value=0.068 Score=44.27 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+|+|+|++|+||+|+|..+...+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 455799999999999999999987755
No 292
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.00 E-value=0.0072 Score=55.06 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=28.3
Q ss_pred HHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 199 ELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 199 ~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.|..+|..+- ....++.|+|++|+|||||+..++...
T Consensus 119 ~LD~lL~ggi-~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGI-ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSE-ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444554322 456799999999999999999999876
No 293
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.99 E-value=0.0042 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=21.1
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 294
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.99 E-value=0.0047 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.0
Q ss_pred ceEEEEEccCccchHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 295
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.99 E-value=0.0043 Score=52.66 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 296
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.98 E-value=0.0043 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.4
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..|.|.|++|+||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998773
No 297
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.96 E-value=0.0062 Score=57.68 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=28.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEE
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFL 246 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 246 (364)
....+++|+|++|+|||||++.++..+... .+.+++
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 456799999999999999999999876543 333444
No 298
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.96 E-value=0.0037 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|+|++|+|||||++.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998743
No 299
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.96 E-value=0.0067 Score=53.80 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....+++|.|++|+|||||++.++..+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 345589999999999999999999876544
No 300
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.94 E-value=0.037 Score=52.05 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=34.9
Q ss_pred ccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEE
Q 036738 192 GIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFL 246 (364)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 246 (364)
|...-...|..++.. - ....++.|.|.+|+||||||..++.....+-..++|+
T Consensus 179 gi~TG~~~LD~~lgG-l-~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 179 GVPSGFTELDRMTYG-Y-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SBCCSCHHHHHHHSS-B-CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcCCCcHHHHhhcCC-C-CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 333445556666532 1 4456899999999999999999998765432234444
No 301
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.94 E-value=0.0071 Score=54.19 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=25.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
++.++|+|.|-||+||||.+..++-.+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 467899999999999999999998877654
No 302
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.93 E-value=0.032 Score=52.43 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=35.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhccc-ccceEEeeccccccccCCHHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHEF-EGSSFLANVREKSEREGGVISFQRQLVSQ 269 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (364)
....++|.|.+|+|||+|+..+++.+.... +.++|+- + .+.......+...+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-i---GER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-V---GERTREGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-E---SCCHHHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-C---CCcchHHHHHHHHhhhc
Confidence 345789999999999999999998764332 3334432 2 22222455566555543
No 303
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.93 E-value=0.039 Score=50.46 Aligned_cols=28 Identities=25% Similarity=0.115 Sum_probs=23.8
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....++|.|++|+|||+|+..+++.+..
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 3457899999999999999999987654
No 304
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.92 E-value=0.003 Score=56.00 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=20.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998654
No 305
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.92 E-value=0.0042 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|.|++|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999974
No 306
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.92 E-value=0.0068 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....++.|.|.+|+|||+||..++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998765
No 307
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.91 E-value=0.0035 Score=54.53 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998643
No 308
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.91 E-value=0.0034 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||++.++..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999998744
No 309
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.91 E-value=0.012 Score=53.68 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=25.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+|+|+|.+|+|||||+..++..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999887644
No 310
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.90 E-value=0.0036 Score=54.78 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999998643
No 311
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.90 E-value=0.0089 Score=59.50 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=34.2
Q ss_pred HHHHhcCCCeE--EEEEecCC---CH---HHHHHHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeC
Q 036738 287 ILGSRLQHKKV--LLVIDDVI---DS---KQLEYLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKP 347 (364)
Q Consensus 287 ~l~~~l~~~~~--LlVlDdv~---~~---~~~~~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l 347 (364)
.|...|..++- +|+||+-. |+ ..+..+...+. ..|..||++|++...+.. ++.++.|
T Consensus 212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~--~d~ii~l 276 (670)
T 3ux8_A 212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR--DLGNTLIVVEHDEDTMLA--ADYLIDI 276 (670)
T ss_dssp HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH--HTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence 45555555544 99999863 22 23333333332 246789999999887654 4556555
No 312
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.90 E-value=0.0086 Score=64.19 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....++|+|+.|+|||||++.+...+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 44689999999999999999988754
No 313
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.88 E-value=0.0049 Score=55.64 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.8
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.87 E-value=0.0054 Score=54.62 Aligned_cols=27 Identities=15% Similarity=0.312 Sum_probs=23.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|+|++|+|||||++.++..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999999876
No 315
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.85 E-value=0.0051 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.639 Sum_probs=22.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
....+|+|.|++|+||||+|+.++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999984
No 316
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.82 E-value=0.0068 Score=51.69 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=25.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.....|.|.|++|+||||+++.++..+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34578999999999999999999998765
No 317
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.82 E-value=0.033 Score=44.74 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=60.1
Q ss_pred ccccCcccHHHHHHHHHHcCCCeEEeeCCCC----CC----CCCchHHHHHHHHhcceEEEEeecccccCcccHHHHHHH
Q 036738 21 RGADTRKNFISHLYAALNGKGIYVFKDDEEL----EK----GESISPRLLKAIEASRIAIIVFSKNYASSTWCLDELVHI 92 (364)
Q Consensus 21 ~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~----~~----g~~~~~~~~~~l~~s~~~v~v~S~~~~~s~~~~~El~~~ 92 (364)
+.+| .....-|...-.+...--|.|..+. .. -..|.+.+.+.|..|+.+|+++|++...|.|...|+..+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 5566 3566777776666666667776433 22 345778889999999999999999999999999999877
Q ss_pred H-HhhhcCCCeeEEeEEee
Q 036738 93 L-DCKNKNAQRMVYPIFYD 110 (364)
Q Consensus 93 ~-~~~~~~~~~~viPv~~~ 110 (364)
. +.+. . ||-|..+
T Consensus 105 i~~~~~----P-II~Vy~~ 118 (189)
T 3hyn_A 105 IGTKGL----P-VIVIYPD 118 (189)
T ss_dssp TTTTCC----C-EEEEETT
T ss_pred HHhcCC----c-EEEEECC
Confidence 7 4332 2 6666543
No 318
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.82 E-value=0.0088 Score=48.62 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.++++|.|++|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999987654
No 319
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.82 E-value=0.0039 Score=56.14 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..++|.|.|+.|+|||||+..++.++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999998764
No 320
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.81 E-value=0.0052 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.6
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.++.|+|++|+||||||..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998754
No 321
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.80 E-value=0.031 Score=52.70 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=35.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEeeccccccccCCHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLANVREKSEREGGVISFQRQLVS 268 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (364)
....++|.|.+|+|||+|+.++++.+... -+.++|+- + .+.......+...+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-i---GER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-V---GERTREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-E---SCCSHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-c---ccCcHHHHHHHHhhhc
Confidence 34468999999999999999999886433 34444443 2 2223245555555544
No 322
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.78 E-value=0.029 Score=47.00 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=54.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc-cccceEEeeccccccccCCHHHHHHHHHHHHhcCCC-CCccChhhhHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE-FEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD-NRIWNEDDGINI 287 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~ 287 (364)
....+..++|+-|.||||.+...+.+...+ ..+.++-.... ... +.. .+.+.+..... ....+..+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d---~R~-ge~----~i~s~~g~~~~a~~~~~~~~---- 93 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID---NRY-SEE----DVVSHNGLKVKAVPVSASKD---- 93 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------------CCEEECSSGGG----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC---Ccc-hHH----HHHhhcCCeeEEeecCCHHH----
Confidence 345688899999999999998888876554 33333322111 111 112 22333211111 01111111
Q ss_pred HHHhcCCCeEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCCh
Q 036738 288 LGSRLQHKKVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSRDE 333 (364)
Q Consensus 288 l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr~~ 333 (364)
+.+.+.++.-+|++|++. +.++++.+.... ..|..||+|-++.
T Consensus 94 ~~~~~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 94 IFKHITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQ 138 (214)
T ss_dssp GGGGCCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSB
T ss_pred HHHHHhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEeccc
Confidence 222333444599999984 455665444322 1377899999853
No 323
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.77 E-value=0.0056 Score=54.46 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.++++|.||.|+||||||..++.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35789999999999999999998653
No 324
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.76 E-value=0.061 Score=51.82 Aligned_cols=63 Identities=11% Similarity=0.259 Sum_probs=39.1
Q ss_pred eEEEEEecCCCHH-----H----HHHHhccCCCCCCCcEEEEEeCChhh--hhh---CCCCceeeCCCCCHhHHHHHHh
Q 036738 296 KVLLVIDDVIDSK-----Q----LEYLAGKHGWYGSGSRIIITSRDEGL--LKT---NRVDEVYKPNGLNYNEALQLFN 360 (364)
Q Consensus 296 ~~LlVlDdv~~~~-----~----~~~l~~~~~~~~~gs~iliTtr~~~v--~~~---~~~~~~~~l~~L~~~ea~~L~~ 360 (364)
.++||+|++.+.. . +..+...-. ..|.++|++|+.+.+ ... ......+.+..-+..++..+|-
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR--a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKAR--AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT--TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh--hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 5799999997542 1 223333222 458899999988652 111 1233456677778888887774
No 325
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.75 E-value=0.0069 Score=51.79 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+|+|.|++|+||||+++.++.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4566899999999999999999998653
No 326
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.73 E-value=0.037 Score=51.56 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=25.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999877654
No 327
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.72 E-value=0.0047 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 328
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.71 E-value=0.0073 Score=53.61 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
..+++.|.|+.|+||||||..++.++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356889999999999999999998753
No 329
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.69 E-value=0.012 Score=51.20 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+..+..+|.... .....+.|+|++|+|||.+|..+++.+
T Consensus 90 ~~~l~~~l~~~~-~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKF-GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCS-TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCC-CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 445677776542 223468999999999999999999853
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.67 E-value=0.0062 Score=55.49 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34589999999999999999999743
No 331
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.64 E-value=0.033 Score=59.76 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....|+|+|+.|+|||||++.+.+-+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34579999999999999999998643
No 332
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.62 E-value=0.077 Score=49.52 Aligned_cols=103 Identities=13% Similarity=0.005 Sum_probs=54.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCC--CCCccChhhhHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLT--DNRIWNEDDGINI 287 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~ 287 (364)
...++..|.|.+|+||||+....+.. .....+. .-......+-+.+.... .............
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlT----------pT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsf 223 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF-----EEDLILV----------PGRQAAEMIRRRANASGIIVATKDNVRTVDSF 223 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT-----TTCEEEE----------SCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHH
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc-----CCeEEEe----------CCHHHHHHHHHHhhhcCccccccceEEEeHHh
Confidence 56789999999999999999887642 2222332 12333444545543211 1111122222233
Q ss_pred HHHhcCCC---eEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeC
Q 036738 288 LGSRLQHK---KVLLVIDDVI--DSKQLEYLAGKHGWYGSGSRIIITSR 331 (364)
Q Consensus 288 l~~~l~~~---~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iliTtr 331 (364)
+......+ --+||+|++. +...+..+..... ..++|+.--
T Consensus 224 L~~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD 268 (446)
T 3vkw_A 224 LMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGD 268 (446)
T ss_dssp HHTTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEEC
T ss_pred hcCCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecC
Confidence 33322211 3589999984 5556655554432 256666543
No 333
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.61 E-value=0.0073 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.0
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 334
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0093 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=22.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999998764
No 335
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.59 E-value=0.16 Score=45.81 Aligned_cols=126 Identities=8% Similarity=-0.032 Sum_probs=73.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc-ccccceEEeeccccccccCCHHHHHHHHHHHHhcCCCCCccChhhhHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH-EFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTDNRIWNEDDGINIL 288 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 288 (364)
.-.++..++|+.|.||++.+..++..+.. .|+....+. .. ... ++..+...+..
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~-~~~~l~~~~~~-------------------- 70 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNT-DWNAIFSLCQA-------------------- 70 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTC-CHHHHHHHHHH--------------------
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCC-CHHHHHHHhcC--------------------
Confidence 34568899999999999999999987643 333211111 11 111 33333222211
Q ss_pred HHhcCCCeEEEEEecCCC---HHHHHHHhccCCCCCCCcEEEEEeCC-------hhhhhh-CCCCceeeCCCCCHhHHHH
Q 036738 289 GSRLQHKKVLLVIDDVID---SKQLEYLAGKHGWYGSGSRIIITSRD-------EGLLKT-NRVDEVYKPNGLNYNEALQ 357 (364)
Q Consensus 289 ~~~l~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iliTtr~-------~~v~~~-~~~~~~~~l~~L~~~ea~~ 357 (364)
.-+-+++-++|+|+++. ....+.+...+....+++.+|+++.+ ..+... .....+++..+++.++...
T Consensus 71 -~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 71 -MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp -HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred -cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 11234556788999864 34555565555444567777776643 123333 2345678899999888776
Q ss_pred HHhh
Q 036738 358 LFNM 361 (364)
Q Consensus 358 L~~~ 361 (364)
.+.+
T Consensus 150 ~l~~ 153 (343)
T 1jr3_D 150 WVAA 153 (343)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 336
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.59 E-value=0.013 Score=60.19 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=21.1
Q ss_pred CCceEEEEEccCccchHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIY 233 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~ 233 (364)
....+++|.|++|.||||+.+.++
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999984
No 337
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.58 E-value=0.01 Score=56.68 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=32.1
Q ss_pred ccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 192 GIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
-|....+.+++...... +...+|.|.|++|+||||||+.++.++..
T Consensus 376 ~rpeV~~vLr~~~~~~~-~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRP-KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGG-GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhccccc-ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 33334444555442211 45578999999999999999999999864
No 338
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.58 E-value=0.025 Score=57.95 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
....+++|.|++|.|||||.+.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3457899999999999999998874
No 339
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.55 E-value=0.01 Score=54.54 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....++|+|++|+|||||++.++....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4456899999999999999999997653
No 340
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.53 E-value=0.029 Score=47.12 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=24.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...|.|.|+.|+||||+++.+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4688999999999999999999988754
No 341
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.52 E-value=0.011 Score=57.23 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=25.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...+++|.|++|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4568999999999999999999998764
No 342
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.52 E-value=0.0082 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEEccCccchHHHHHHHHHHh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.++|+|++|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.51 E-value=0.0076 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.7
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34589999999999999999999744
No 344
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.49 E-value=0.0069 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=22.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+.+.|.|++|+||||||..++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999999764
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.49 E-value=0.0079 Score=54.88 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34589999999999999999999743
No 346
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.46 E-value=0.0081 Score=54.85 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34589999999999999999999743
No 347
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.44 E-value=0.0086 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...++|+|++|+|||||.+.++...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.40 E-value=0.0062 Score=54.31 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|+|++|+|||||++.++..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345689999999999999999998744
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.40 E-value=0.0088 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEccCccchHHHHHHHHHHhh
Q 036738 214 MIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+.+|+|++|+|||||+..++.-+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999987543
No 350
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.40 E-value=0.0084 Score=54.59 Aligned_cols=26 Identities=42% Similarity=0.645 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999743
No 351
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.39 E-value=0.015 Score=51.78 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=25.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++|+|+|-||+||||+|..++..+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 467889999999999999999999887654
No 352
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.38 E-value=0.0089 Score=54.80 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44589999999999999999999743
No 353
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.37 E-value=0.0068 Score=55.22 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999743
No 354
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.37 E-value=0.014 Score=63.21 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=58.2
Q ss_pred cchhHHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHh
Q 036738 193 IDSRLEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLL 271 (364)
Q Consensus 193 r~~~~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 271 (364)
...-...|..+|. .+- ....++.|.|++|+||||||.+++......-..++|+. ..... ... .+..+.
T Consensus 364 isTGi~~LD~lLg~GGl-~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis----~E~s~-~~~-----~a~~lG 432 (1706)
T 3cmw_A 364 ISTGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHAL-DPI-----YARKLG 432 (1706)
T ss_dssp ECCSCHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCC-CHH-----HHHHTT
T ss_pred eccCcHHHHHHhccCCc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE----ccCch-HHH-----HHHHcC
Confidence 3344566777775 222 45678999999999999999999887654434566665 12222 221 122222
Q ss_pred cCCC----CCccChhhhHHHHHHhc-CCCeEEEEEecCC
Q 036738 272 KLTD----NRIWNEDDGINILGSRL-QHKKVLLVIDDVI 305 (364)
Q Consensus 272 ~~~~----~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 305 (364)
.... ....+.++....++... ..+.-+||+|.+.
T Consensus 433 vd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 433 VDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp CCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred CCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 1110 11223444444444433 3456699999884
No 355
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.33 E-value=0.016 Score=48.96 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=22.8
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
-.|.+.|.||+||||+|..++..+..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347889999999999999999886554
No 356
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.31 E-value=0.012 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.6
Q ss_pred eEEEEEccCccchHHHHHHHHHHhh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 357
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.31 E-value=0.011 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.3
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
+..|.|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999998874
No 358
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.29 E-value=0.063 Score=49.15 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=33.0
Q ss_pred ccccccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 188 KKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 188 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..++|....+.++...+..-. .....+.|.|++|+||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a-~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA-KSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH-TSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhh-ccchhheEEeCCCchHHHHHHHHHHhc
Confidence 457787777666655543211 122347899999999999999987654
No 359
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.28 E-value=0.021 Score=49.40 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....++.+.|.||+|||||+..++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4456888999999999999999998766
No 360
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.28 E-value=0.0096 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...++|+|++|+|||||.+.++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 361
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.27 E-value=0.012 Score=49.13 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=24.2
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
.+|.|.|+.|+||||+++.+++++.-.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 589999999999999999999987544
No 362
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.25 E-value=0.0098 Score=54.55 Aligned_cols=26 Identities=38% Similarity=0.439 Sum_probs=22.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|.|++|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34589999999999999999999754
No 363
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.23 E-value=0.016 Score=61.99 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.....++|+|++|+|||||++.+...+
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998654
No 364
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.23 E-value=0.0072 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.139 Sum_probs=22.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....+++|.|+.|+|||||++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998875
No 365
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.22 E-value=0.027 Score=60.22 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.....++|+|++|+|||||++.++..+
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344689999999999999999998743
No 366
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.15 E-value=0.1 Score=45.24 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=23.0
Q ss_pred CCceEEEEE-ccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGIC-GMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~-G~~GiGKTtLa~~~~~~~~ 237 (364)
...++|+|+ +-||+||||+|..++..+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 456788886 4599999999999999887
No 367
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.12 E-value=0.012 Score=53.88 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=24.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...++|+|++|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999876543
No 368
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.11 E-value=0.02 Score=55.08 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=25.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....+|.++|++|+||||+|+.+++.+.-.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 345688999999999999999999877533
No 369
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.11 E-value=0.039 Score=57.31 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=19.8
Q ss_pred ceEEEEEccCccchHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVI 232 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~ 232 (364)
..+++|.|++|.|||||.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 579999999999999999998
No 370
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.11 E-value=0.03 Score=50.69 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+++|.|++|+|||||.+.++..+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45678999999999999999999976543
No 371
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.0068 Score=59.36 Aligned_cols=51 Identities=22% Similarity=0.154 Sum_probs=35.8
Q ss_pred ccccccccchhHHHHHHhhcCCCC--------CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 186 ILKKLVGIDSRLEELRFLMDKGPS--------ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 186 ~~~~~~Gr~~~~~~l~~~L~~~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..+.++|.+.....+...|..+.. .+...+.|+|++|+|||+||+.+++..
T Consensus 293 l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 346688988877776555544310 001158999999999999999998754
No 372
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.09 E-value=0.033 Score=47.25 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=22.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....|.|.|+.|+||||+++.+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 35689999999999999999999987654
No 373
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.09 E-value=0.013 Score=49.75 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
-..++|.|++|+||||+|+.++.++.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998763
No 374
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.09 E-value=0.02 Score=62.97 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=59.5
Q ss_pred cccchhHHHHHHhhc-CCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHH
Q 036738 191 VGIDSRLEELRFLMD-KGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQ 269 (364)
Q Consensus 191 ~Gr~~~~~~l~~~L~-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (364)
.+...-...|..+|. .+- ....++.|.|++|+||||||..++......-..++|+. ..... ... . +..
T Consensus 362 ~~I~TG~~~LD~lLG~GGl-~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis----~E~s~-~~~--~---a~~ 430 (2050)
T 3cmu_A 362 ETISTGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHAL-DPI--Y---ARK 430 (2050)
T ss_dssp CEECCSCHHHHHHHSSSSE-ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCC-CHH--H---HHH
T ss_pred ceeeCCCHHHHHHhccCCc-cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----cCCCH-HHH--H---HHH
Confidence 344444566777775 222 45679999999999999999999987765433456655 11111 211 1 223
Q ss_pred HhcCCC----CCccChhhhHHHHHHhc-CCCeEEEEEecCC
Q 036738 270 LLKLTD----NRIWNEDDGINILGSRL-QHKKVLLVIDDVI 305 (364)
Q Consensus 270 l~~~~~----~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 305 (364)
+..... ....+.++....++... ..+.-+||+|.+.
T Consensus 431 lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 431 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred cCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 222111 11234445555554433 3456799999873
No 375
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.09 E-value=0.041 Score=46.19 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.1
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..|.|.|+.|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999987654
No 376
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.08 E-value=0.023 Score=49.41 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=23.4
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
++|+|.|-||+||||+|..++..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 467888999999999999999887654
No 377
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.08 E-value=0.011 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred eEEEEEccCccchHHHHHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+|+|.|+.|+||||+++.++.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998865
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.07 E-value=0.013 Score=52.63 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..++++|.|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999998754
No 379
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.07 E-value=0.015 Score=46.48 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.0
Q ss_pred eEEEEEccCccchHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
..++|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 380
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.05 E-value=0.039 Score=47.10 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=24.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...|.|.|+.|+||||+++.++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999987654
No 381
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.02 E-value=0.022 Score=47.56 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=24.9
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFE 241 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 241 (364)
..|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865444
No 382
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.01 E-value=0.0091 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=22.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...+++|+|++|+|||||.+.++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999873
No 383
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.98 E-value=0.048 Score=53.93 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=29.2
Q ss_pred hhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHH-HHhhcccccceEEe
Q 036738 195 SRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIY-DLISHEFEGSSFLA 247 (364)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~-~~~~~~f~~~~~~~ 247 (364)
.+.+.+...|... .+..|+||||+|||+.+.++. +.+... ..+.++
T Consensus 193 ~Q~~AV~~al~~~-----~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~ 239 (646)
T 4b3f_X 193 SQKEAVLFALSQK-----ELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHCS-----SEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHhcCC-----CceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEE
Confidence 4556677666532 367899999999997555444 444432 345554
No 384
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.93 E-value=0.018 Score=53.82 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...++|.|.+|+|||+|+.++++....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 345789999999999999999887554
No 385
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.93 E-value=0.034 Score=50.36 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=24.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+++|.|.+|+|||||+..++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999876543
No 386
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.87 E-value=0.011 Score=48.07 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEEccCccchHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~ 234 (364)
-|+|+|.+|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999875
No 387
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.87 E-value=0.023 Score=50.52 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
+++|.+.+.. .+++|.|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G------~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG------FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT------CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC------cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4555555532 478999999999999999998 54
No 388
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.86 E-value=0.019 Score=52.20 Aligned_cols=29 Identities=34% Similarity=0.393 Sum_probs=25.0
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
....++|.|++|+|||||++.++......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45589999999999999999999986543
No 389
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.86 E-value=0.018 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.3
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 390
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.81 E-value=0.023 Score=48.08 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.....|.|.|+.|+||||+++.+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999999999999998765
No 391
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.78 E-value=0.088 Score=53.35 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=35.5
Q ss_pred HHHHhcCCC---eEEEEEecCC---CHHHHH---HHhccCCCCCCCcEEEEEeCChhhhhhCCCCceeeCC
Q 036738 287 ILGSRLQHK---KVLLVIDDVI---DSKQLE---YLAGKHGWYGSGSRIIITSRDEGLLKTNRVDEVYKPN 348 (364)
Q Consensus 287 ~l~~~l~~~---~~LlVlDdv~---~~~~~~---~l~~~~~~~~~gs~iliTtr~~~v~~~~~~~~~~~l~ 348 (364)
.|...|..+ +-|+|||+-. |....+ .++..+. ..|..||++|++.+... . ++.++.|.
T Consensus 740 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~--~~G~tVIvisHdl~~i~-~-aDrii~L~ 806 (842)
T 2vf7_A 740 KLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV--DAGNTVIAVEHKMQVVA-A-SDWVLDIG 806 (842)
T ss_dssp HHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHT-T-CSEEEEEC
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHH-h-CCEEEEEC
Confidence 355556553 6899999874 333333 2222222 24678999999988773 3 56777773
No 392
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.73 E-value=0.034 Score=54.02 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=24.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
....+|.|.|++|+||||+|+.+++++.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4557899999999999999999999875
No 393
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.69 E-value=0.031 Score=60.67 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=59.0
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccccCCHHHHHHHHHHHHhcCCC-
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREGGVISFQRQLVSQLLKLTD- 275 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 275 (364)
...|...|..+.=...++|-|+|+.|+||||||.++.......=...+|+. .+...+.. .+..++....
T Consensus 1416 ~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~-----~e~~~~~~-----~~~~~Gv~~~~ 1485 (1706)
T 3cmw_A 1416 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-----AEHALDPI-----YARKLGVDIDN 1485 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-----TTSCCCHH-----HHHHTTCCGGG
T ss_pred CHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe-----cCCCCCHH-----HHHHcCCCHHH
Confidence 345666665433255689999999999999999999977665555667776 22221222 1333332211
Q ss_pred ---CCccChhhhHHHHHHhc-CCCeEEEEEecC
Q 036738 276 ---NRIWNEDDGINILGSRL-QHKKVLLVIDDV 304 (364)
Q Consensus 276 ---~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv 304 (364)
..+..-++.+..+...+ .+..-+||+|-|
T Consensus 1486 l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1486 LLCSQPDTGEQALEICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred eEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccH
Confidence 12233344444454444 456779999987
No 394
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.68 E-value=0.021 Score=46.43 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.1
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999863
No 395
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.66 E-value=0.032 Score=49.09 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=23.4
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
++|+|.|-||+||||+|..++..+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999887654
No 396
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.64 E-value=0.026 Score=47.81 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=23.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
..+|.|.|+.|+||||+++.+++++.-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999987653
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.62 E-value=0.0092 Score=51.94 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=23.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
.....|+|.|..|+||||+++.+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4457899999999999999999987764
No 398
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.61 E-value=0.034 Score=50.55 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+|+|+|.+|+|||||...+......
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 34678999999999999999999976543
No 399
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.016 Score=54.75 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
...+++|+|++|+|||||++.++...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34579999999999999999999754
No 400
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.61 E-value=0.019 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.8
Q ss_pred EEEEEccCccchHHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.59 E-value=0.024 Score=44.70 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..+.+|+|++|+|||||..+++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999987654
No 402
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.59 E-value=0.041 Score=46.93 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=24.1
Q ss_pred CceEEEEEcc-CccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGM-GGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~ 239 (364)
..++|+|++. ||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 4578888755 9999999999999988765
No 403
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.55 E-value=0.02 Score=45.31 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.-.|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 404
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.54 E-value=0.033 Score=52.87 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
...+|.++|++|+||||+++.++..+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34578999999999999999999876533
No 405
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.52 E-value=0.057 Score=48.99 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+++.+.|-||+||||+|..++..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 4457888999999999999999998776
No 406
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.48 E-value=0.029 Score=47.21 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.6
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
...|.|.|+.|+||||+++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998875
No 407
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.47 E-value=0.017 Score=52.82 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=49.0
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhcccccceEEeeccccccc-cCCHHHHHHHHHHHHhcCCCCC-ccChhhhHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSER-EGGVISFQRQLVSQLLKLTDNR-IWNEDDGINILGS 290 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~ 290 (364)
..++|+|++|+|||||++.++..+... .+.+.+....+.... ......+. ....... ..........++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~~e~~~~~~~~~v~~v-------~~q~~~~~~~~~~t~~~~i~~ 247 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDVPELFLPDHPNHVHLF-------YPSEAKEEENAPVTAATLLRS 247 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESSSCCCCTTCSSEEEEE-------CC----------CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCccccCccccCCEEEEe-------ecCccccccccccCHHHHHHH
Confidence 479999999999999999999866542 444555422211100 00000000 0000000 0011123455666
Q ss_pred hcCCCeEEEEEecCCCHHHHHHHh
Q 036738 291 RLQHKKVLLVIDDVIDSKQLEYLA 314 (364)
Q Consensus 291 ~l~~~~~LlVlDdv~~~~~~~~l~ 314 (364)
.++..+-.+++|++...+.++.+.
T Consensus 248 ~l~~~pd~~l~~e~r~~~~~~~l~ 271 (361)
T 2gza_A 248 CLRMKPTRILLAELRGGEAYDFIN 271 (361)
T ss_dssp HTTSCCSEEEESCCCSTHHHHHHH
T ss_pred HHhcCCCEEEEcCchHHHHHHHHH
Confidence 666666678888887766665443
No 408
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.45 E-value=0.027 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..-+.|.|++|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356899999999999999999874
No 409
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.37 E-value=0.082 Score=43.73 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.6
Q ss_pred EEEEEccCccchHHHHHHHHHHhhccc
Q 036738 214 MIGICGMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~~~~~f 240 (364)
.|+|-|.-|+||||.++.+++.+..+-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478899999999999999999887653
No 410
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.37 E-value=0.063 Score=48.43 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=24.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..+++.+.|-||+||||+|..++..+...
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhC
Confidence 45678888999999999999999876654
No 411
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.37 E-value=0.026 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
No 412
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.35 E-value=0.044 Score=45.80 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.1
Q ss_pred EEEEE-ccCccchHHHHHHHHHHhhccc
Q 036738 214 MIGIC-GMGGLGKTTLARVIYDLISHEF 240 (364)
Q Consensus 214 ~v~I~-G~~GiGKTtLa~~~~~~~~~~f 240 (364)
+|+|+ +-||+||||+|..++..+...-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g 29 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG 29 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC
Confidence 46665 6699999999999999887654
No 413
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.32 E-value=0.029 Score=46.88 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.....|.|+|++|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 414
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.31 E-value=0.028 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=24.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHHhh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...+|.|.|++|+||||+|+.+++++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999873
No 415
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.30 E-value=0.023 Score=54.86 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=23.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|+|++|+|||||++.++..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998754
No 416
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.30 E-value=0.025 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..|+|.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 417
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.30 E-value=0.93 Score=39.58 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.7
Q ss_pred CceEEEEEccCccchHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
....++|+|.+|+|||||...+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 345689999999999999999875
No 418
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.29 E-value=0.025 Score=53.11 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=24.8
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.....++|.|++|+|||||++.++.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34568999999999999999999987654
No 419
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.28 E-value=0.015 Score=48.25 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.3
Q ss_pred CCceEEEEEccCccchHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
.....++|+|++|+|||||.+.++.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999988764
No 420
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.27 E-value=0.026 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEccCccchHHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 421
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.27 E-value=0.025 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 422
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.26 E-value=0.029 Score=44.94 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998753
No 423
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.25 E-value=0.044 Score=52.96 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHhhc
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
....+|.+.|++|+||||+|+.++.++..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34578999999999999999999987653
No 424
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.22 E-value=0.027 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.-.|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 425
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.21 E-value=0.033 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.2
Q ss_pred ceEEEEEccCccchHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
...|+|+|.+|+|||||...+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 44689999999999999999875
No 426
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.20 E-value=0.041 Score=47.00 Aligned_cols=25 Identities=32% Similarity=0.716 Sum_probs=22.1
Q ss_pred EEEEccCccchHHHHHHHHHHhhcc
Q 036738 215 IGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
|+|.|-||+||||+|..++..+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC
Confidence 5669999999999999999987765
No 427
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.19 E-value=0.092 Score=43.52 Aligned_cols=39 Identities=26% Similarity=0.127 Sum_probs=27.4
Q ss_pred cccchhHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHH
Q 036738 191 VGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 191 ~Gr~~~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.=++.+.+.+..++... .+.|.++.|.|||.++...+..
T Consensus 33 ~l~~~Q~~~i~~~~~~~------~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 33 QLRPYQMEVAQPALEGK------NIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCCHHHHHHHHHHHTTC------CEEEECSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcCC------CEEEEcCCCCCHHHHHHHHHHH
Confidence 33455566666666432 3789999999999988777654
No 428
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.19 E-value=0.033 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.0
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...++|.|.+|+|||+|+..+++...
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578899999999999999998754
No 429
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.17 E-value=0.027 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.163 Sum_probs=21.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||+..+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3446789999999999999999864
No 430
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.16 E-value=0.028 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEccCccchHHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 431
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.15 E-value=0.024 Score=52.73 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.5
Q ss_pred EEEEccCccchHHHHHHHHHH
Q 036738 215 IGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~ 235 (364)
++|+|++|+|||||++.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999863
No 432
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.15 E-value=0.032 Score=52.82 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.3
Q ss_pred eEEEEEccCccchHHHHHHHHHHhhc
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLISH 238 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 238 (364)
.+++|.|++|+|||||++.++..+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 68999999999999999999986654
No 433
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.14 E-value=0.037 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.162 Sum_probs=19.6
Q ss_pred ceEEEEEccCccchHHHHH-HHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLAR-VIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~-~~~~~~ 236 (364)
...++|.|.+|+|||+||. .+++..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh
Confidence 4468999999999999964 666554
No 434
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.13 E-value=0.026 Score=46.01 Aligned_cols=28 Identities=32% Similarity=0.252 Sum_probs=21.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..-|+|+|.+|+|||||++.+.......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 3468999999999999997776654433
No 435
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.12 E-value=0.029 Score=44.47 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEEccCccchHHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 436
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.12 E-value=0.09 Score=47.17 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=22.5
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhhcc
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 239 (364)
..++...|-||+||||+|..++..+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS 41 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC
Confidence 3566667899999999999999876554
No 437
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.11 E-value=0.031 Score=44.13 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEccCccchHHHHHHHHHH
Q 036738 215 IGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 215 v~I~G~~GiGKTtLa~~~~~~ 235 (364)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 438
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.11 E-value=0.047 Score=44.21 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.2
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999998753
No 439
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.10 E-value=0.029 Score=44.49 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
-.|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 440
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.027 Score=55.14 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|.|++|+|||||.+.++..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345689999999999999999998744
No 441
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.07 E-value=0.029 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.5
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.--|+|+|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999888764
No 442
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.06 E-value=0.03 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999999864
No 443
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.05 E-value=0.037 Score=44.43 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=21.5
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34556899999999999999998864
No 444
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.05 E-value=0.3 Score=46.51 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=20.3
Q ss_pred eEEEEEccCccchHHHHHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
..+.|.|.+|+|||++++.+...+
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999887643
No 445
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.03 E-value=0.034 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=20.7
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.-.|+|+|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999988863
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.03 E-value=0.028 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999864
No 447
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.02 E-value=0.021 Score=53.35 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=21.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHHhh
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDLIS 237 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 237 (364)
...++|.|.+|+|||+|+.++++...
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 34578999999999999999987644
No 448
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.01 E-value=0.027 Score=44.58 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.7
Q ss_pred EEEEEccCccchHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~ 234 (364)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 479999999999999998864
No 449
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.01 E-value=0.029 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.1
Q ss_pred eEEEEEccCccchHHHHHHHHHHh
Q 036738 213 RMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
.+++|+|++|+|||||++.++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 478999999999999999998644
No 450
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.029 Score=44.52 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.7
Q ss_pred eEEEEEccCccchHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
-.|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3579999999999999999985
No 451
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.00 E-value=0.044 Score=48.66 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHHHh
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
++++...+.. .+++|.|++|+|||||.+.++...
T Consensus 160 v~~lf~~l~g------eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG------KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS------SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC------CeEEEECCCCCcHHHHHHHhcccc
Confidence 4455555533 378999999999999999987643
No 452
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.00 E-value=0.034 Score=45.40 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998753
No 453
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.99 E-value=0.025 Score=50.34 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.7
Q ss_pred EEEEEccCccchHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~ 234 (364)
.|+|+|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 469999999999999999764
No 454
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.98 E-value=0.049 Score=45.02 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=22.3
Q ss_pred eEEEEE-ccCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGIC-GMGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~ 239 (364)
++|+|+ +-||+||||+|..++..+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~ 29 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS 29 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 467787 559999999999999887654
No 455
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.97 E-value=0.031 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..|+|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 456
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.97 E-value=0.032 Score=44.18 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.2
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
-.|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 457
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.97 E-value=0.04 Score=44.15 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34457899999999999999999875
No 458
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.96 E-value=0.04 Score=43.67 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.1
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999853
No 459
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.90 E-value=0.043 Score=52.88 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=25.9
Q ss_pred CceEEEEEccCccchHHHHHHH--HHHhhcccccceEEe
Q 036738 211 DVRMIGICGMGGLGKTTLARVI--YDLISHEFEGSSFLA 247 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~--~~~~~~~f~~~~~~~ 247 (364)
...+++|.|++|+|||||++.+ ...... -.+.+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 4458999999999999999995 333332 23566665
No 460
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.88 E-value=0.04 Score=43.71 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.2
Q ss_pred eEEEEEccCccchHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999863
No 461
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.87 E-value=0.079 Score=50.12 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHH-HHHHHHhh
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLA-RVIYDLIS 237 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~ 237 (364)
+..|..++-- .....++|.|.+|+|||+|| ..+++...
T Consensus 150 iraID~l~Pi---grGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 150 IKAVDSLVPI---GRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CHHHHHHSCC---BTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred ceeecccccc---ccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 3444444433 23446899999999999995 56666554
No 462
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.85 E-value=0.044 Score=43.47 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=20.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999763
No 463
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.84 E-value=0.034 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred ceEEEEEccCccchHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999885
No 464
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.84 E-value=0.035 Score=44.46 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999999864
No 465
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.84 E-value=0.046 Score=43.75 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.1
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..-.|+|+|.+|+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998753
No 466
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.83 E-value=0.11 Score=48.90 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCCCCceEEEEEccCccchHHHH-HHHHHH
Q 036738 197 LEELRFLMDKGPSADVRMIGICGMGGLGKTTLA-RVIYDL 235 (364)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~ 235 (364)
+..|..++-- .....++|.|..|+|||+|+ ..+++.
T Consensus 150 ikaID~l~Pi---grGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 150 YKAVDSMIPI---GRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp CHHHHHHSCC---BTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred eeeecccccc---ccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 4455555433 23446899999999999996 455553
No 467
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.82 E-value=0.034 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.--|+|+|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346899999999999999998864
No 468
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.78 E-value=0.035 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||+..+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999863
No 469
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.78 E-value=0.064 Score=45.45 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=22.1
Q ss_pred eEEEEEc-cCccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICG-MGGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G-~~GiGKTtLa~~~~~~~~~~ 239 (364)
++|+|+| -||+||||+|..++..+...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~ 30 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDR 30 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence 4677765 58999999999999987654
No 470
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.76 E-value=0.062 Score=46.21 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=22.0
Q ss_pred eEEEEEcc-CccchHHHHHHHHHHhhcc
Q 036738 213 RMIGICGM-GGLGKTTLARVIYDLISHE 239 (364)
Q Consensus 213 ~~v~I~G~-~GiGKTtLa~~~~~~~~~~ 239 (364)
++|+|+|. ||+||||+|..++..+..+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~ 30 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQK 30 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC
Confidence 56777654 8999999999999887654
No 471
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.72 E-value=0.037 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.132 Sum_probs=20.0
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999853
No 472
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.71 E-value=0.037 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999998864
No 473
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.70 E-value=0.042 Score=44.71 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998864
No 474
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.70 E-value=0.037 Score=44.75 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.4
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 475
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.70 E-value=0.038 Score=44.60 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||+..+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999864
No 476
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.68 E-value=0.47 Score=47.82 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=23.9
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEccCccchHHHHHHHHH
Q 036738 196 RLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
+...+...+... ..+.|.|+.|+||||++..++.
T Consensus 98 q~~~i~~~l~~~-----~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 98 QRDEFLKLYQNN-----QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp GHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-----CeEEEECCCCCCHHHHHHHHHH
Confidence 345555555432 3789999999999997666643
No 477
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.68 E-value=0.035 Score=45.03 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEEccCccchHHHHHHHHHH
Q 036738 214 MIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 214 ~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998863
No 478
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.67 E-value=0.038 Score=44.68 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999999864
No 479
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.66 E-value=0.35 Score=46.36 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.4
Q ss_pred CceEEEEEccCccchHHHHHHHHHHh
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....++|.|..|+|||+|+..+++..
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~~ 256 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKWS 256 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCEEeeecCCCccHHHHHHHHHhcc
Confidence 34578999999999999999998763
No 480
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.65 E-value=0.039 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999999864
No 481
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.62 E-value=0.031 Score=54.71 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHHHh
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYDLI 236 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 236 (364)
....+++|+|++|+|||||++.++..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345689999999999999999998754
No 482
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.62 E-value=0.04 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=20.0
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
--|+|+|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998753
No 483
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.60 E-value=0.04 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=20.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 484
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.57 E-value=0.07 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=19.7
Q ss_pred ceEEEEEccCccchHHHH-HHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLA-RVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa-~~~~~~~ 236 (364)
...++|.|.+|+|||+|| ..+++..
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 346899999999999996 4666544
No 485
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.56 E-value=0.041 Score=44.22 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=20.4
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
.-.|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999988753
No 486
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.042 Score=44.12 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.8
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446899999999999999998764
No 487
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.043 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=20.5
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46899999999999999999865
No 488
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.53 E-value=0.13 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.6
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....++|.|..|+|||+|+..+++.
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc
Confidence 3457899999999999999998765
No 489
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.53 E-value=0.042 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceEEEEEccCccchHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
...|+|+|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45689999999999999999985
No 490
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.042 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 491
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.50 E-value=0.031 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.0
Q ss_pred CceEEEEEccCccchHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIY 233 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~ 233 (364)
....|+|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999999885
No 492
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.042 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=20.9
Q ss_pred ceEEEEEccCccchHHHHHHHHHH
Q 036738 212 VRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...|+|+|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998864
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.50 E-value=0.042 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.163 Sum_probs=21.5
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
...-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999874
No 494
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.49 E-value=0.044 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457999999999999999999864
No 495
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.49 E-value=0.046 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred eEEEEEccCccchHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
..|+|+|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999998864
No 496
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.48 E-value=0.038 Score=44.30 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.1
Q ss_pred CCceEEEEEccCccchHHHHHHHHH
Q 036738 210 ADVRMIGICGMGGLGKTTLARVIYD 234 (364)
Q Consensus 210 ~~~~~v~I~G~~GiGKTtLa~~~~~ 234 (364)
+....|+|+|.+|+|||||+..+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999875
No 497
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.47 E-value=0.047 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.6
Q ss_pred eEEEEEccCccchHHHHHHHHHH
Q 036738 213 RMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 213 ~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 498
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.46 E-value=0.043 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.3
Q ss_pred CceEEEEEccCccchHHHHHHHHHH
Q 036738 211 DVRMIGICGMGGLGKTTLARVIYDL 235 (364)
Q Consensus 211 ~~~~v~I~G~~GiGKTtLa~~~~~~ 235 (364)
....|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998864
No 499
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.45 E-value=0.072 Score=48.85 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCceEEEEEc-cCccchHHHHHHHHHHhhcccccceEEe
Q 036738 210 ADVRMIGICG-MGGLGKTTLARVIYDLISHEFEGSSFLA 247 (364)
Q Consensus 210 ~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 247 (364)
...++|+|+| -||+||||+|..++..+...-..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5678888885 7999999999999987765422334443
No 500
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.45 E-value=0.034 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.163 Sum_probs=19.6
Q ss_pred ceEEEEEccCccchHHHH-HHHHHHh
Q 036738 212 VRMIGICGMGGLGKTTLA-RVIYDLI 236 (364)
Q Consensus 212 ~~~v~I~G~~GiGKTtLa-~~~~~~~ 236 (364)
...++|.|.+|+|||+|| ..+++..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh
Confidence 446899999999999996 4666544
Done!