BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036740
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 136/447 (30%), Positives = 216/447 (48%), Gaps = 47/447 (10%)
Query: 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRI-GTRVTFAIA----ISAYRRMANNPTP 55
ME+ + PH ++ P GH+ P ++FA+RL + G VTF IA S +R + P
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 56 EDGLS-FASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVY 114
S F D D +++ R +S RS+ L ++ S EGG+ T LV
Sbjct: 61 SSISSVFLPPVDLTDLSSSTRIESR---ISLTVTRSNPELRKVFD-SFVEGGRLPTALVV 116
Query: 115 PQLLPWAAEVARAYHLPSALLWLQPAXXXXXXXXXXXXXXXXIEGKVNDLIE---LPGLP 171
A +VA +H+P + + A + + +L E LPG
Sbjct: 117 DLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET-VSCEFRELTEPLMLPGCV 175
Query: 172 PLTGRDLPSFLDPRN--SNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAI 229
P+ G+D FLDP +DAY ++L + K EA ILVNTF LE +KA+
Sbjct: 176 PVAGKD---FLDPAQDRKDDAYKWLLHNTKRYKEA------EGILVNTFFELEPNAIKAL 226
Query: 230 -----DKFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGT 284
DK + +GPLV G K + + ++WL ++P SV+YV+FG+
Sbjct: 227 QEPGLDKPPVYPVGPLV---------NIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGS 277
Query: 285 ICVLEKRQVEEIARGLLDSGHPFLWVSRE-------SXXXXXXXXXXXXXVMMKYKEELN 337
L Q+ E+A GL DS FLWV R S + + E
Sbjct: 278 GGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK 337
Query: 338 EKGMIVP-WCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIV 396
++G ++P W Q +VL+H + G F+THCGW+S+LES+V G+P++A+P + +Q NA ++
Sbjct: 338 KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS 397
Query: 397 DFCKTGVRVKANEEGIVESDEINRCLE 423
+ + +R +A ++G+V +E+ R ++
Sbjct: 398 EDIRAALRPRAGDDGLVRREEVARVVK 424
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 198/428 (46%), Gaps = 33/428 (7%)
Query: 4 QQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPE--DGLS- 60
++PH +++ +P+QGHINP + A+ L G +TF ++R+ + P+ DG +
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65
Query: 61 --FASFSDGYD--DGFNSKQNDRKHYMSEFKRRSSEALAELIT-ASQNEGGQPFTCLVYP 115
F S DG +G D ++ + EL+T + + P TCLV
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSD 125
Query: 116 QLLPWAAEVARAYHLPSALLWLQPAXXXXXXXXXXXXXXXXI------EGKVNDLIE--- 166
+ + + A + LP+ L + A I N +E
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 167 --LPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAE 224
+PGL +D+ F+ N ND +L F E + + ++T IL+NTF+ LE++
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPND---IMLEFFIEVADRVNKDT--TILLNTFNELESD 240
Query: 225 TLKAIDKF--NMIAIGPLVASALLDGKEQYGGDLCKNSSKE--YYMEWLSSKPKSSVIYV 280
+ A+ ++ IGPL + + L N KE ++WL SK SV+YV
Sbjct: 241 VINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYV 300
Query: 281 AFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESXXXXXXXXXXXXXVMMKYKEELNEKG 340
FG+ V+ Q+ E A GL + FLW+ R ++ E+ ++G
Sbjct: 301 NFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSS-----EFTNEIADRG 355
Query: 341 MIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCK 400
+I WC Q +VL+H ++G F+THCGW+S+ ES+ GVP++ +P + DQ T+ + I + +
Sbjct: 356 LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWE 415
Query: 401 TGVRVKAN 408
G+ + N
Sbjct: 416 IGMEIDTN 423
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/444 (24%), Positives = 188/444 (42%), Gaps = 61/444 (13%)
Query: 2 EQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMA----NNPTPED 57
+ PH +L FP H P L RRL F+ ++ + + T +
Sbjct: 3 QTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQC 62
Query: 58 GLSFASFSDGYDDGF---NSKQNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVY 114
+ SDG +G+ Q D + F R + E+ + + + E G+P +CLV
Sbjct: 63 NIKSYDISDGVPEGYVFAGRPQED----IELFTRAAPESFRQGMVMAVAETGRPVSCLVA 118
Query: 115 PQLLPWAAEVARAYHLPSALLWLQP----AXXXXXXXXXXXXXXXXIEGKVNDLIE-LPG 169
+ +AA++A + W + I+G+ ++L+ +PG
Sbjct: 119 DAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPG 178
Query: 170 LPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALE------- 222
+ + RDL + N N +S +L +M ++ + + +N+F+ L+
Sbjct: 179 MSKVRFRDLQEGIVFGNLNSLFSRML----HRMGQVLPKAT-AVFINSFEELDDSLTNDL 233
Query: 223 ---AETLKAIDKFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIY 279
+T I FN+I P+V + ++WL + +SV+Y
Sbjct: 234 KSKLKTYLNIGPFNLITPPPVVPNT------------------TGCLQWLKERKPTSVVY 275
Query: 280 VAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESXXXXXXXXXXXXXVMMKYKEELNEK 339
++FGT+ +V ++ L S PF+W R+ + E+
Sbjct: 276 ISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPE---------GFLEKTRGY 326
Query: 340 GMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFC 399
GM+VPW Q EVL+HEAVG FVTHCGW+S ES+ GVP++ P + DQ N +++ D
Sbjct: 327 GMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVL 386
Query: 400 KTGVRVKANEEGIVESDEINRCLE 423
+ GVR+ E G+ + C +
Sbjct: 387 EIGVRI---EGGVFTKSGLMSCFD 407
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/435 (25%), Positives = 173/435 (39%), Gaps = 57/435 (13%)
Query: 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI------SAYRRMANNPTPEDGLSF 61
H +L FP H P L +++ +VTF+ + + R +N P + +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSR-SNEFLPN--IKY 71
Query: 62 ASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWA 121
+ DG G+ S N R+ F + E +I + E G+ TCLV +
Sbjct: 72 YNVHDGLPKGYVSSGNPREPIFL-FIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFG 130
Query: 122 AEVARAYHLPSALLWLQPAXXXXXXXXXXXXXXXXIEGKVNDLIE---LPGLPPLTGRDL 178
A++A H LW +V+D+ LPG P L DL
Sbjct: 131 ADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDL 190
Query: 179 PSFLDPRNSNDAYSFVLPSFKEQMEAIVEETD-PRILVNTFDALEAETLKAIDKFNMIAI 237
P E ++++ D P + LE A+ + I
Sbjct: 191 P-----------------------EGVIKDIDVPFATMLHKMGLELPRANAVAINSFATI 227
Query: 238 GPLVASALLD--------GKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLE 289
PL+ + L G K S + +EWL SSV+Y++FG++
Sbjct: 228 HPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPP 287
Query: 290 KRQVEEIARGLLDSGHPFLWVSRESXXXXXXXXXXXXXVMMKYKEELNEKGMIVPWCSQV 349
++ +A L + G PF+W R + + E KG IV W QV
Sbjct: 288 PHELTALAESLEECGFPFIWSFRGDPKEK---------LPKGFLERTKTKGKIVAWAPQV 338
Query: 350 EVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE 409
E+L H +VG F+TH GW+S LE +V GVP+++ P + DQG N + + GV V +
Sbjct: 339 EILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV---D 395
Query: 410 EGIVESDEINRCLEL 424
G++ + I + LEL
Sbjct: 396 NGVLTKESIKKALEL 410
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 23/220 (10%)
Query: 213 ILVNTFDALEAETLKAIDKFN-----MIAIGPLVASALLDGKEQYGGDLCKNSSKEYYME 267
I+VNTF LE ++ A+ + + A+GPL LD K Q L + + ++
Sbjct: 215 IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPL-----LDLKGQPNPKL-DQAQHDLILK 268
Query: 268 WLSSKPKSSVIYVAFGTICV-LEKRQVEEIARGLLDSGHPFLWVSRESXXXXXXXXXXXX 326
WL +P SV+++ FG++ V Q+ EIA GL SG FLW +
Sbjct: 269 WLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM 328
Query: 327 XVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT 386
EL KGMI W QVEVL+H+A+G FV+HCGW+S LES+ +GVP++ +P +
Sbjct: 329 --------ELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA 380
Query: 387 DQGTNAKIIVDFCKTGVRVKANEE---GIVESDEINRCLE 423
+Q NA +V G+ ++ + +V ++EI + L+
Sbjct: 381 EQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLK 420
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 23/220 (10%)
Query: 213 ILVNTFDALEAETLKAIDKFN-----MIAIGPLVASALLDGKEQYGGDLCKNSSKEYYME 267
I+VNTF LE ++ A+ + + A+GPL LD K Q L + + ++
Sbjct: 215 IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPL-----LDLKGQPNPKL-DQAQHDLILK 268
Query: 268 WLSSKPKSSVIYVAFGTICV-LEKRQVEEIARGLLDSGHPFLWVSRESXXXXXXXXXXXX 326
WL +P SV+++ FG++ V Q+ EIA GL SG FLW +
Sbjct: 269 WLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM 328
Query: 327 XVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT 386
EL KGMI W QVEVL+H+A+G FV+HCGW+S LES+ +GVP++ +P +
Sbjct: 329 --------ELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA 380
Query: 387 DQGTNAKIIVDFCKTGVRVKANEE---GIVESDEINRCLE 423
+Q NA +V G+ ++ + +V ++EI + L+
Sbjct: 381 EQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLK 420
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 345 WCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDF 398
W Q+++L+ + F+TH G S++E+L VP+VA PQ +Q NA+ IV+
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41
H P GH+NPSL + L G RV++AI
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAI 47
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 345 WCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTN--------AKIIV 396
W Q ++L H F+TH G + E++ +G+P V P + DQ N A + V
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRV 134
Query: 397 DF 398
DF
Sbjct: 135 DF 136
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 335 ELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKI 394
EL + + W Q+ +L FVTH G S E L P++A PQ DQ NA +
Sbjct: 280 ELPDNVEVHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADM 337
Query: 395 I 395
+
Sbjct: 338 L 338
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 1 MEQQQQP-HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI-AISAYRRMANNPTP 55
M Q P H + + GH+NPSL+ R L G RVT+AI + A + A P P
Sbjct: 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRP 57
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 345 WCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKII 395
W V+VL V C VTH G + E+L +G P+V PQ D A+ +
Sbjct: 304 WVPHVKVLEQATV-C-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV 352
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 345 WCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKII 395
W V+VL V C VTH G + E+L +G P+V PQ D A+ +
Sbjct: 304 WVPHVKVLEQATV-C-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV 352
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 345 WCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTD 387
W Q +L H V V H G ++L +L GVP ++FP D
Sbjct: 299 WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGD 339
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 3 QQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTF 39
+Q H L GH+ PSL L R G R+T+
Sbjct: 1 HXRQRHILFANVQGHGHVYPSLGLVSELARRGHRITY 37
>pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Initial Trna Binding State
pdb|2DER|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Initial Trna Binding State
pdb|2DET|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Pre-Reaction State
pdb|2DEU|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Adenylated Intermediate State
pdb|2DEU|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Adenylated Intermediate State
Length = 380
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 210 DPRILVN------TFDALEAETLKAIDKFNMIAIGPLVASALLDGKEQYGGDLCKNSSKE 263
+P IL N F AE L A + IA G V A +DGK + L N +
Sbjct: 109 NPDILCNKEIKFKAFLEFAAEDLGA----DYIATGHYVRRADVDGKSRLLRGLDSNKDQS 164
Query: 264 YYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGL 300
Y++ LS + + ++ + LEK QV +IA L
Sbjct: 165 YFLYTLSHEQIAQSLF----PVGELEKPQVRKIAEDL 197
>pdb|3LIA|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z2
pdb|3LIA|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z2
Length = 291
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 172 PLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRIL 214
P+TG+ + F +P + D +SFVL KE+M A V++ R+L
Sbjct: 243 PITGKTVIMFYEPVKTGD-FSFVLVVPKEEMLAGVKDLRDRLL 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,880,719
Number of Sequences: 62578
Number of extensions: 453540
Number of successful extensions: 1292
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 26
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)