Query 036740
Match_columns 424
No_of_seqs 127 out of 1293
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:00:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 3.3E-62 7.1E-67 472.4 41.0 409 1-424 1-425 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 7.4E-62 1.6E-66 466.2 41.4 395 1-424 1-404 (449)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 6.2E-62 1.3E-66 469.0 40.6 395 1-424 1-406 (451)
4 PLN02152 indole-3-acetate beta 100.0 8.5E-61 1.9E-65 459.6 40.6 399 6-424 3-413 (455)
5 PLN02210 UDP-glucosyl transfer 100.0 1.1E-60 2.5E-65 462.0 40.2 394 5-424 7-411 (456)
6 PLN02562 UDP-glycosyltransfera 100.0 1.5E-60 3.3E-65 460.7 40.9 395 1-424 1-409 (448)
7 PLN02670 transferase, transfer 100.0 1.7E-60 3.7E-65 458.9 39.7 402 1-424 1-425 (472)
8 PLN02208 glycosyltransferase f 100.0 6.9E-60 1.5E-64 453.7 39.0 384 1-424 1-397 (442)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.6E-59 3.4E-64 455.4 41.8 403 4-423 7-428 (477)
10 PLN00414 glycosyltransferase f 100.0 1.8E-59 4E-64 451.2 41.2 384 1-424 1-398 (446)
11 PLN02764 glycosyltransferase f 100.0 1.9E-59 4.1E-64 448.1 40.0 388 1-424 1-403 (453)
12 PLN02992 coniferyl-alcohol glu 100.0 1.4E-59 3E-64 453.0 39.0 387 5-424 4-423 (481)
13 PLN03004 UDP-glycosyltransfera 100.0 3.4E-59 7.4E-64 448.1 39.0 397 6-424 3-420 (451)
14 PLN02207 UDP-glycosyltransfera 100.0 2.8E-58 6.1E-63 443.1 39.8 396 6-424 3-422 (468)
15 PLN02534 UDP-glycosyltransfera 100.0 3.1E-58 6.8E-63 445.3 40.3 401 5-424 7-440 (491)
16 PLN02448 UDP-glycosyltransfera 100.0 3.5E-58 7.6E-63 447.7 39.7 392 3-424 7-411 (459)
17 PLN02554 UDP-glycosyltransfera 100.0 2.3E-58 5E-63 450.5 37.4 391 6-424 2-436 (481)
18 PLN03015 UDP-glucosyl transfer 100.0 1E-57 2.3E-62 437.3 39.0 391 6-424 3-422 (470)
19 PLN00164 glucosyltransferase; 100.0 1.7E-57 3.8E-62 442.6 38.7 391 6-424 3-427 (480)
20 PLN03007 UDP-glucosyltransfera 100.0 3.3E-57 7.1E-62 443.0 39.4 399 5-424 4-436 (482)
21 PLN02167 UDP-glycosyltransfera 100.0 1.2E-56 2.5E-61 437.9 39.0 397 6-424 3-430 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 7.7E-46 1.7E-50 363.3 26.7 366 6-424 20-428 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 8.6E-48 1.9E-52 383.4 8.3 360 8-424 2-405 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 7.2E-42 1.6E-46 330.4 28.0 340 12-423 1-354 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.9E-42 6.3E-47 334.7 23.0 338 7-423 1-367 (401)
26 COG1819 Glycosyl transferases, 100.0 2.7E-39 5.8E-44 309.0 18.9 349 6-424 1-364 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.7E-39 3.7E-44 323.9 16.7 364 6-408 5-405 (496)
28 PF13528 Glyco_trans_1_3: Glyc 100.0 2E-26 4.2E-31 216.7 27.4 305 7-424 1-316 (318)
29 PRK12446 undecaprenyldiphospho 99.9 1.6E-23 3.5E-28 197.9 28.3 306 7-423 2-320 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 3.3E-22 7.2E-27 187.6 25.0 291 8-408 1-300 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 1.2E-19 2.6E-24 169.6 24.4 304 7-423 1-319 (357)
32 COG4671 Predicted glycosyl tra 99.8 1.6E-17 3.5E-22 147.9 25.2 335 5-423 8-360 (400)
33 PRK00726 murG undecaprenyldiph 99.8 4E-17 8.6E-22 156.1 24.6 308 6-423 1-319 (357)
34 cd03785 GT1_MurG MurG is an N- 99.8 4.7E-16 1E-20 148.3 25.1 309 8-423 1-319 (350)
35 TIGR03590 PseG pseudaminic aci 99.7 1.6E-15 3.5E-20 138.8 23.6 105 276-394 171-278 (279)
36 TIGR01133 murG undecaprenyldip 99.7 5.9E-14 1.3E-18 133.7 25.6 302 7-423 1-316 (348)
37 PRK13609 diacylglycerol glucos 99.6 8E-13 1.7E-17 127.4 25.3 131 273-423 200-333 (380)
38 PF04101 Glyco_tran_28_C: Glyc 99.5 8E-16 1.7E-20 130.3 0.6 132 277-424 1-140 (167)
39 TIGR00215 lpxB lipid-A-disacch 99.5 1.7E-12 3.6E-17 124.7 22.6 310 7-423 6-342 (385)
40 PF03033 Glyco_transf_28: Glyc 99.5 1.8E-14 4E-19 118.1 1.6 124 9-140 1-132 (139)
41 PRK13608 diacylglycerol glucos 99.4 1.3E-10 2.8E-15 112.3 25.0 118 273-406 200-323 (391)
42 PRK00025 lpxB lipid-A-disaccha 99.3 1.9E-10 4.2E-15 110.9 21.4 37 6-43 1-37 (380)
43 PLN02605 monogalactosyldiacylg 99.2 3.7E-09 8.1E-14 101.9 24.0 76 338-423 265-342 (382)
44 TIGR03492 conserved hypothetic 99.2 7.3E-09 1.6E-13 99.8 25.5 315 20-423 10-359 (396)
45 cd03814 GT1_like_2 This family 99.1 7E-08 1.5E-12 91.9 27.5 76 336-423 245-327 (364)
46 cd03823 GT1_ExpE7_like This fa 99.1 7.5E-08 1.6E-12 91.4 24.2 75 337-423 242-324 (359)
47 PLN02871 UDP-sulfoquinovose:DA 99.0 3.8E-07 8.2E-12 90.4 28.3 121 277-423 264-395 (465)
48 cd03800 GT1_Sucrose_synthase T 99.0 1.3E-06 2.9E-11 84.5 29.1 74 338-423 283-363 (398)
49 COG3980 spsG Spore coat polysa 99.0 6.2E-08 1.4E-12 84.7 16.8 116 277-407 160-276 (318)
50 cd03808 GT1_cap1E_like This fa 98.9 2.1E-06 4.5E-11 81.1 28.7 307 8-423 1-324 (359)
51 cd03816 GT1_ALG1_like This fam 98.9 7.2E-07 1.6E-11 87.0 25.9 120 5-137 2-129 (415)
52 cd03794 GT1_wbuB_like This fam 98.9 3.4E-07 7.3E-12 87.7 23.1 75 337-423 274-360 (394)
53 cd03817 GT1_UGDG_like This fam 98.9 2.9E-06 6.2E-11 80.8 27.3 65 337-408 258-329 (374)
54 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 2.4E-07 5.3E-12 88.7 19.2 128 274-423 197-332 (363)
55 PF04007 DUF354: Protein of un 98.8 3.8E-06 8.3E-11 78.2 25.5 110 7-138 1-112 (335)
56 cd04962 GT1_like_5 This family 98.8 3.6E-06 7.8E-11 80.7 24.3 73 338-422 253-330 (371)
57 PRK10307 putative glycosyl tra 98.8 8.5E-06 1.9E-10 79.5 26.9 127 277-423 230-368 (412)
58 cd03801 GT1_YqgM_like This fam 98.8 1.3E-05 2.8E-10 75.9 27.5 76 336-423 254-336 (374)
59 TIGR03449 mycothiol_MshA UDP-N 98.7 3.3E-05 7.1E-10 75.2 29.9 74 338-423 283-363 (405)
60 PLN02275 transferase, transfer 98.7 4.2E-05 9.1E-10 73.5 29.8 72 338-423 286-368 (371)
61 cd03825 GT1_wcfI_like This fam 98.7 9.5E-06 2.1E-10 77.4 25.4 76 336-423 242-325 (365)
62 cd03818 GT1_ExpC_like This fam 98.7 4.1E-05 9E-10 74.3 29.5 74 338-423 281-361 (396)
63 cd03795 GT1_like_4 This family 98.7 2.1E-05 4.6E-10 74.7 26.8 127 277-423 192-327 (357)
64 cd03798 GT1_wlbH_like This fam 98.7 2.4E-05 5.2E-10 74.2 27.2 126 276-423 202-339 (377)
65 cd03805 GT1_ALG2_like This fam 98.7 4.4E-05 9.6E-10 73.8 28.6 74 337-423 279-359 (392)
66 TIGR00236 wecB UDP-N-acetylglu 98.7 5.6E-06 1.2E-10 79.4 21.9 123 275-423 197-329 (365)
67 TIGR02468 sucrsPsyn_pln sucros 98.6 5.6E-05 1.2E-09 79.5 28.3 133 5-138 168-342 (1050)
68 cd03802 GT1_AviGT4_like This f 98.6 1.1E-05 2.4E-10 76.1 21.0 123 278-423 173-303 (335)
69 cd03799 GT1_amsK_like This is 98.6 0.00015 3.3E-09 68.8 28.5 75 337-423 235-322 (355)
70 cd03796 GT1_PIG-A_like This fa 98.6 6.9E-05 1.5E-09 72.8 26.5 46 338-385 250-302 (398)
71 TIGR02472 sucr_P_syn_N sucrose 98.6 0.00023 4.9E-09 70.1 30.1 75 337-423 316-401 (439)
72 cd03811 GT1_WabH_like This fam 98.6 3.8E-05 8.1E-10 72.2 23.8 65 337-408 245-314 (353)
73 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 5.6E-05 1.2E-09 72.2 24.3 100 274-383 200-307 (365)
74 cd03820 GT1_amsD_like This fam 98.5 0.00011 2.4E-09 68.9 25.9 74 338-423 235-314 (348)
75 cd03819 GT1_WavL_like This fam 98.5 0.00016 3.4E-09 68.8 26.6 76 337-422 245-324 (355)
76 cd03821 GT1_Bme6_like This fam 98.5 0.00011 2.5E-09 69.7 25.7 73 337-423 261-340 (375)
77 cd05844 GT1_like_7 Glycosyltra 98.5 5.3E-05 1.1E-09 72.5 22.6 75 337-423 244-331 (367)
78 KOG3349 Predicted glycosyltran 98.4 1.9E-06 4.2E-11 68.0 9.2 119 277-408 5-135 (170)
79 cd03822 GT1_ecORF704_like This 98.4 0.00014 3E-09 69.2 24.3 74 337-423 246-329 (366)
80 PRK05749 3-deoxy-D-manno-octul 98.4 6.2E-05 1.3E-09 73.8 22.2 75 339-423 303-383 (425)
81 TIGR02470 sucr_synth sucrose s 98.4 0.00027 5.9E-09 72.7 27.1 121 7-136 256-415 (784)
82 PRK14089 ipid-A-disaccharide s 98.4 8.3E-05 1.8E-09 69.9 21.6 130 276-423 168-314 (347)
83 cd04951 GT1_WbdM_like This fam 98.4 4E-05 8.6E-10 73.0 19.8 72 338-423 245-321 (360)
84 PRK09922 UDP-D-galactose:(gluc 98.4 0.00012 2.6E-09 70.1 22.6 127 277-423 181-319 (359)
85 cd03812 GT1_CapH_like This fam 98.3 0.00094 2E-08 63.5 27.4 74 337-423 248-326 (358)
86 PLN02846 digalactosyldiacylgly 98.3 0.00017 3.6E-09 70.3 21.8 40 5-44 3-47 (462)
87 cd03807 GT1_WbnK_like This fam 98.3 0.0012 2.6E-08 62.4 26.1 72 338-423 251-327 (365)
88 cd04955 GT1_like_6 This family 98.2 0.00062 1.3E-08 64.8 23.6 95 279-385 196-301 (363)
89 PRK15179 Vi polysaccharide bio 98.1 0.0076 1.6E-07 62.1 30.4 76 337-422 573-653 (694)
90 PLN00142 sucrose synthase 98.1 0.0013 2.9E-08 67.9 24.8 73 338-422 642-726 (815)
91 TIGR02149 glgA_Coryne glycogen 98.1 0.004 8.6E-08 60.1 27.5 114 277-408 202-331 (388)
92 cd03809 GT1_mtfB_like This fam 98.0 0.00047 1E-08 65.5 18.1 47 336-384 251-304 (365)
93 PRK00654 glgA glycogen synthas 98.0 0.0041 8.8E-08 61.7 25.2 129 277-423 283-423 (466)
94 PRK15427 colanic acid biosynth 98.0 0.0061 1.3E-07 59.3 25.8 75 337-423 278-365 (406)
95 PF02350 Epimerase_2: UDP-N-ac 98.0 9.7E-05 2.1E-09 69.9 12.6 213 91-382 56-283 (346)
96 COG5017 Uncharacterized conser 98.0 6.9E-05 1.5E-09 58.2 9.3 109 278-407 2-123 (161)
97 TIGR03088 stp2 sugar transfera 98.0 0.0042 9.2E-08 59.6 24.3 74 338-423 255-333 (374)
98 TIGR03087 stp1 sugar transfera 97.8 0.0043 9.2E-08 60.2 21.1 73 337-423 279-357 (397)
99 PRK01021 lpxB lipid-A-disaccha 97.8 0.0067 1.5E-07 60.4 22.1 140 231-396 380-528 (608)
100 cd03806 GT1_ALG11_like This fa 97.8 0.013 2.8E-07 57.3 23.8 74 337-423 304-387 (419)
101 cd03804 GT1_wbaZ_like This fam 97.7 0.0012 2.7E-08 62.7 15.4 121 278-423 197-321 (351)
102 cd03792 GT1_Trehalose_phosphor 97.6 0.023 5E-07 54.5 22.8 63 337-406 251-322 (372)
103 COG0381 WecB UDP-N-acetylgluco 97.5 0.042 9.1E-07 51.5 20.7 302 6-406 3-325 (383)
104 COG1519 KdtA 3-deoxy-D-manno-o 97.4 0.11 2.4E-06 49.2 25.1 294 13-407 55-372 (419)
105 cd03791 GT1_Glycogen_synthase_ 97.4 0.056 1.2E-06 53.8 23.2 79 337-423 350-437 (476)
106 PF13844 Glyco_transf_41: Glyc 97.4 0.0016 3.5E-08 63.1 11.5 124 273-407 282-415 (468)
107 TIGR02095 glgA glycogen/starch 97.4 0.07 1.5E-06 53.1 23.7 126 277-423 292-432 (473)
108 cd04950 GT1_like_1 Glycosyltra 97.4 0.14 3E-06 49.2 25.0 73 337-423 253-335 (373)
109 COG1817 Uncharacterized protei 97.4 0.079 1.7E-06 48.0 20.5 106 14-139 7-114 (346)
110 PRK10125 putative glycosyl tra 97.3 0.21 4.5E-06 48.6 24.5 92 291-408 256-356 (405)
111 PLN02501 digalactosyldiacylgly 97.2 0.32 7E-06 49.6 25.4 46 339-386 602-652 (794)
112 PF02684 LpxB: Lipid-A-disacch 97.1 0.083 1.8E-06 50.3 18.7 143 231-397 152-301 (373)
113 PF06722 DUF1205: Protein of u 96.9 0.0013 2.7E-08 49.4 3.6 52 263-314 28-84 (97)
114 PF00534 Glycos_transf_1: Glyc 96.8 0.011 2.4E-07 49.7 10.0 75 337-423 72-153 (172)
115 PF13692 Glyco_trans_1_4: Glyc 96.8 0.0034 7.4E-08 50.5 6.5 75 337-423 52-130 (135)
116 PRK10422 lipopolysaccharide co 96.8 0.19 4.2E-06 47.8 19.3 107 5-134 4-113 (352)
117 cd04949 GT1_gtfA_like This fam 96.8 0.081 1.8E-06 50.6 16.6 78 337-423 260-340 (372)
118 cd03813 GT1_like_3 This family 96.8 0.18 3.9E-06 50.2 19.4 75 337-423 353-437 (475)
119 cd01635 Glycosyltransferase_GT 96.7 0.35 7.6E-06 42.0 19.1 48 337-386 160-215 (229)
120 PLN02316 synthase/transferase 96.7 1.2 2.6E-05 48.0 29.6 41 4-44 585-631 (1036)
121 TIGR02193 heptsyl_trn_I lipopo 96.7 0.16 3.4E-06 47.6 17.4 44 8-51 1-46 (319)
122 cd04946 GT1_AmsK_like This fam 96.6 0.028 6.1E-07 54.7 12.3 129 276-423 230-372 (407)
123 PLN02949 transferase, transfer 96.6 0.84 1.8E-05 45.2 28.7 46 337-384 334-386 (463)
124 PF13477 Glyco_trans_4_2: Glyc 96.5 0.025 5.4E-07 45.7 9.3 100 8-135 1-105 (139)
125 PRK10916 ADP-heptose:LPS hepto 96.2 1.2 2.6E-05 42.3 21.9 103 7-134 1-106 (348)
126 COG3914 Spy Predicted O-linked 96.0 0.072 1.6E-06 52.2 10.7 103 273-383 427-538 (620)
127 PRK15484 lipopolysaccharide 1, 96.0 0.097 2.1E-06 50.5 12.0 78 335-423 254-339 (380)
128 PRK10964 ADP-heptose:LPS hepto 95.8 1.1 2.3E-05 42.1 18.0 45 7-51 1-47 (322)
129 COG0763 LpxB Lipid A disacchar 95.8 0.87 1.9E-05 42.9 16.6 137 220-382 145-289 (381)
130 PF13579 Glyco_trans_4_4: Glyc 95.4 0.033 7.1E-07 45.7 5.6 95 21-136 5-103 (160)
131 COG0859 RfaF ADP-heptose:LPS h 95.4 1.9 4.2E-05 40.6 18.0 105 6-134 1-107 (334)
132 TIGR02201 heptsyl_trn_III lipo 95.3 2.7 5.8E-05 39.8 21.4 105 8-134 1-108 (344)
133 PF12000 Glyco_trans_4_3: Gkyc 95.2 0.33 7.3E-06 40.6 10.6 92 32-135 1-94 (171)
134 TIGR02195 heptsyl_trn_II lipop 95.1 3.1 6.6E-05 39.2 20.4 102 8-134 1-105 (334)
135 KOG4626 O-linked N-acetylgluco 95.1 0.15 3.3E-06 50.4 9.4 125 274-408 757-890 (966)
136 TIGR02918 accessory Sec system 95.1 2.6 5.6E-05 42.2 18.6 64 337-406 375-442 (500)
137 PRK15490 Vi polysaccharide bio 94.7 5.5 0.00012 40.1 25.5 64 337-407 454-522 (578)
138 PHA01633 putative glycosyl tra 94.4 0.31 6.7E-06 45.8 9.5 80 336-423 199-302 (335)
139 COG0003 ArsA Predicted ATPase 93.8 0.61 1.3E-05 43.4 10.1 42 6-47 1-43 (322)
140 PF13439 Glyco_transf_4: Glyco 92.7 0.88 1.9E-05 37.7 8.9 32 15-46 10-41 (177)
141 PRK13932 stationary phase surv 92.6 2 4.3E-05 38.6 11.2 44 3-48 2-45 (257)
142 PRK02797 4-alpha-L-fucosyltran 91.5 3.5 7.7E-05 37.8 11.4 129 280-421 149-287 (322)
143 PRK14098 glycogen synthase; Pr 89.9 2.1 4.6E-05 42.8 9.5 80 334-423 358-446 (489)
144 COG1618 Predicted nucleotide k 89.6 2 4.3E-05 35.4 7.3 57 5-66 4-60 (179)
145 PF02441 Flavoprotein: Flavopr 88.7 0.75 1.6E-05 36.7 4.4 44 7-51 1-44 (129)
146 PF08660 Alg14: Oligosaccharid 88.5 5 0.00011 33.7 9.4 111 12-136 3-128 (170)
147 PF02951 GSH-S_N: Prokaryotic 88.5 0.93 2E-05 35.4 4.6 40 7-46 1-43 (119)
148 PRK10017 colanic acid biosynth 88.2 9 0.0002 37.4 12.3 145 265-423 224-387 (426)
149 PRK09814 beta-1,6-galactofuran 87.7 1.2 2.5E-05 42.1 5.8 64 337-406 206-285 (333)
150 PF06258 Mito_fiss_Elm1: Mitoc 87.5 24 0.00053 32.8 21.0 58 346-407 220-282 (311)
151 TIGR00087 surE 5'/3'-nucleotid 86.7 12 0.00025 33.5 11.1 43 7-51 1-43 (244)
152 COG2894 MinD Septum formation 86.4 6.2 0.00013 34.3 8.6 38 7-44 2-41 (272)
153 PF05159 Capsule_synth: Capsul 84.4 9.1 0.0002 34.8 9.7 45 338-385 182-227 (269)
154 COG4088 Predicted nucleotide k 84.1 18 0.0004 31.3 10.3 103 8-141 3-112 (261)
155 cd00550 ArsA_ATPase Oxyanion-t 84.0 5.5 0.00012 35.9 8.0 37 9-45 3-39 (254)
156 PF07429 Glyco_transf_56: 4-al 83.8 19 0.00042 33.7 11.3 132 277-421 185-326 (360)
157 PF06564 YhjQ: YhjQ protein; 83.8 11 0.00024 33.5 9.5 36 7-42 2-38 (243)
158 PF02142 MGS: MGS-like domain 83.5 1.9 4.2E-05 32.2 4.1 84 23-133 2-94 (95)
159 PRK13934 stationary phase surv 83.2 24 0.00051 32.0 11.4 41 7-49 1-41 (266)
160 TIGR00715 precor6x_red precorr 83.2 7.4 0.00016 35.1 8.4 36 7-47 1-36 (256)
161 PRK13933 stationary phase surv 82.7 25 0.00054 31.6 11.3 39 7-47 1-39 (253)
162 PRK02261 methylaspartate mutas 82.2 3.5 7.5E-05 33.2 5.3 42 5-46 2-43 (137)
163 PRK00346 surE 5'(3')-nucleotid 81.5 27 0.00058 31.4 11.1 41 7-49 1-41 (250)
164 smart00851 MGS MGS-like domain 81.4 16 0.00035 26.7 8.4 79 23-133 2-89 (90)
165 PRK13935 stationary phase surv 81.3 32 0.00069 30.9 11.5 40 7-48 1-40 (253)
166 PRK06732 phosphopantothenate-- 80.3 3.1 6.7E-05 36.9 4.8 37 7-43 1-49 (229)
167 COG3660 Predicted nucleoside-d 80.3 44 0.00096 30.1 19.1 36 344-381 234-270 (329)
168 COG0496 SurE Predicted acid ph 79.9 13 0.00028 33.2 8.4 43 7-51 1-43 (252)
169 COG0052 RpsB Ribosomal protein 79.6 12 0.00027 33.0 8.1 32 108-139 156-189 (252)
170 cd02067 B12-binding B12 bindin 79.4 3.6 7.8E-05 32.1 4.5 36 8-43 1-36 (119)
171 cd00561 CobA_CobO_BtuR ATP:cor 79.4 32 0.0007 28.5 10.2 97 8-119 4-106 (159)
172 COG0552 FtsY Signal recognitio 78.8 17 0.00037 33.9 9.0 55 5-64 138-200 (340)
173 PRK08305 spoVFB dipicolinate s 77.6 4.2 9E-05 34.9 4.6 47 5-51 4-50 (196)
174 PF01975 SurE: Survival protei 77.6 4.6 9.9E-05 34.8 4.9 42 7-49 1-42 (196)
175 TIGR00708 cobA cob(I)alamin ad 77.1 36 0.00078 28.6 9.9 96 7-118 6-107 (173)
176 PF04127 DFP: DNA / pantothena 77.0 2.3 5E-05 36.3 2.9 38 7-44 4-53 (185)
177 PRK05986 cob(I)alamin adenolsy 77.0 45 0.00098 28.5 10.6 97 7-118 23-125 (191)
178 PRK06029 3-octaprenyl-4-hydrox 75.9 4.1 8.9E-05 34.7 4.1 45 6-51 1-46 (185)
179 TIGR03713 acc_sec_asp1 accesso 75.5 6.6 0.00014 39.5 6.1 41 338-380 409-455 (519)
180 PF06506 PrpR_N: Propionate ca 75.4 18 0.0004 30.4 8.0 113 17-141 16-155 (176)
181 PRK13789 phosphoribosylamine-- 75.0 15 0.00033 36.0 8.3 34 1-41 1-34 (426)
182 PRK07313 phosphopantothenoylcy 74.8 4.6 9.9E-05 34.3 4.1 45 6-51 1-45 (182)
183 COG1703 ArgK Putative periplas 74.7 15 0.00032 33.7 7.3 42 5-46 50-91 (323)
184 cd01980 Chlide_reductase_Y Chl 74.3 17 0.00036 35.5 8.5 26 108-136 350-375 (416)
185 PRK10867 signal recognition pa 74.0 23 0.00051 34.6 9.2 42 6-47 100-142 (433)
186 PRK05647 purN phosphoribosylgl 74.0 38 0.00082 29.3 9.6 52 6-65 1-58 (200)
187 PRK05920 aromatic acid decarbo 74.0 5 0.00011 34.7 4.2 46 5-51 2-47 (204)
188 COG0541 Ffh Signal recognition 73.4 22 0.00048 34.4 8.5 43 5-47 99-141 (451)
189 PF02374 ArsA_ATPase: Anion-tr 73.2 5.3 0.00012 37.1 4.5 41 7-47 1-42 (305)
190 cd02037 MRP-like MRP (Multiple 73.0 13 0.00029 30.9 6.6 36 9-44 2-38 (169)
191 TIGR00959 ffh signal recogniti 72.6 30 0.00064 33.9 9.6 42 6-47 99-141 (428)
192 PF12146 Hydrolase_4: Putative 72.5 7.5 0.00016 27.9 4.2 35 6-40 15-49 (79)
193 TIGR00064 ftsY signal recognit 72.2 36 0.00079 31.0 9.6 40 6-45 72-111 (272)
194 PF00862 Sucrose_synth: Sucros 71.8 7.5 0.00016 38.2 5.1 112 17-137 296-432 (550)
195 PF02571 CbiJ: Precorrin-6x re 71.1 15 0.00033 33.0 6.7 38 7-50 1-38 (249)
196 cd01424 MGS_CPS_II Methylglyox 71.0 44 0.00095 25.5 8.6 84 18-134 10-100 (110)
197 TIGR02015 BchY chlorophyllide 70.9 22 0.00048 34.7 8.4 89 8-135 287-379 (422)
198 COG3640 CooC CO dehydrogenase 70.0 28 0.0006 30.8 7.7 45 7-51 1-46 (255)
199 TIGR02919 accessory Sec system 69.6 25 0.00054 34.5 8.4 46 338-383 328-378 (438)
200 PF01075 Glyco_transf_9: Glyco 69.3 7.1 0.00015 34.8 4.4 98 274-382 104-208 (247)
201 cd03789 GT1_LPS_heptosyltransf 69.2 52 0.0011 29.9 10.2 102 8-134 1-105 (279)
202 PRK13982 bifunctional SbtC-lik 68.9 9.5 0.00021 37.7 5.3 41 5-45 255-307 (475)
203 TIGR03878 thermo_KaiC_2 KaiC d 68.7 20 0.00042 32.5 7.1 38 7-44 37-74 (259)
204 TIGR00460 fmt methionyl-tRNA f 68.6 36 0.00078 31.8 8.9 32 7-43 1-32 (313)
205 TIGR01425 SRP54_euk signal rec 68.3 38 0.00083 33.1 9.2 41 6-46 100-140 (429)
206 cd01425 RPS2 Ribosomal protein 68.1 26 0.00056 30.1 7.3 117 20-139 42-160 (193)
207 cd03789 GT1_LPS_heptosyltransf 67.5 24 0.00052 32.1 7.6 95 275-382 121-223 (279)
208 cd00532 MGS-like MGS-like doma 66.9 55 0.0012 25.1 8.4 84 19-134 10-104 (112)
209 COG1484 DnaC DNA replication p 66.7 9.8 0.00021 34.3 4.6 47 5-51 104-150 (254)
210 TIGR00347 bioD dethiobiotin sy 66.6 38 0.00082 27.9 8.0 27 14-40 6-32 (166)
211 KOG0780 Signal recognition par 66.5 26 0.00056 33.4 7.2 42 5-46 100-141 (483)
212 PF00551 Formyl_trans_N: Formy 66.3 36 0.00077 28.8 7.8 34 7-43 1-36 (181)
213 PRK06249 2-dehydropantoate 2-r 65.7 13 0.00029 34.6 5.5 48 5-63 4-51 (313)
214 PRK14098 glycogen synthase; Pr 65.5 9.4 0.0002 38.2 4.7 39 5-43 4-48 (489)
215 PRK14099 glycogen synthase; Pr 64.7 10 0.00022 37.8 4.8 39 5-43 2-46 (485)
216 PRK12921 2-dehydropantoate 2-r 64.4 11 0.00024 34.8 4.8 40 7-51 1-40 (305)
217 PRK14099 glycogen synthase; Pr 64.3 44 0.00095 33.4 9.2 80 337-423 349-439 (485)
218 cd01423 MGS_CPS_I_III Methylgl 64.2 47 0.001 25.6 7.6 95 10-134 3-106 (116)
219 PF02310 B12-binding: B12 bind 63.7 22 0.00048 27.4 5.7 37 7-43 1-37 (121)
220 PF08433 KTI12: Chromatin asso 63.6 87 0.0019 28.5 10.1 104 9-145 4-113 (270)
221 PRK06522 2-dehydropantoate 2-r 63.4 9.2 0.0002 35.3 4.0 40 7-51 1-41 (304)
222 PRK13931 stationary phase surv 63.2 85 0.0018 28.4 9.9 27 22-48 15-44 (261)
223 COG2185 Sbm Methylmalonyl-CoA 62.9 14 0.00029 29.9 4.2 39 5-43 11-49 (143)
224 PRK08057 cobalt-precorrin-6x r 62.8 13 0.00029 33.3 4.7 93 6-137 2-100 (248)
225 PHA01630 putative group 1 glyc 62.6 41 0.00088 31.7 8.2 40 344-385 196-242 (331)
226 PF01210 NAD_Gly3P_dh_N: NAD-d 62.3 5 0.00011 33.1 1.8 32 8-44 1-32 (157)
227 PRK05595 replicative DNA helic 62.3 42 0.00092 33.1 8.6 39 9-47 204-243 (444)
228 TIGR01281 DPOR_bchL light-inde 62.0 14 0.00029 33.6 4.8 35 7-41 1-35 (268)
229 cd01974 Nitrogenase_MoFe_beta 61.7 56 0.0012 32.1 9.2 26 108-136 377-402 (435)
230 CHL00072 chlL photochlorophyll 61.5 15 0.00033 33.8 5.0 37 7-43 1-37 (290)
231 PRK04328 hypothetical protein; 61.1 1.2E+02 0.0027 27.1 10.8 42 7-48 24-65 (249)
232 PRK08229 2-dehydropantoate 2-r 60.9 11 0.00024 35.6 4.1 41 6-51 2-42 (341)
233 PRK14619 NAD(P)H-dependent gly 60.7 20 0.00044 33.3 5.7 35 4-43 2-36 (308)
234 TIGR02852 spore_dpaB dipicolin 60.7 13 0.00027 31.8 3.9 41 8-48 2-42 (187)
235 PRK06849 hypothetical protein; 60.5 18 0.00039 34.9 5.6 36 5-44 3-38 (389)
236 cd02032 Bchl_like This family 59.7 15 0.00033 33.2 4.7 37 7-43 1-37 (267)
237 cd01965 Nitrogenase_MoFe_beta_ 59.5 32 0.00068 33.8 7.1 26 108-136 371-396 (428)
238 PRK09620 hypothetical protein; 59.5 13 0.00028 33.0 4.0 38 6-43 3-52 (229)
239 TIGR00421 ubiX_pad polyprenyl 59.3 12 0.00025 31.9 3.5 43 8-51 1-43 (181)
240 PRK06988 putative formyltransf 59.0 64 0.0014 30.1 8.7 33 6-43 2-34 (312)
241 cd02070 corrinoid_protein_B12- 58.9 22 0.00048 30.7 5.3 102 6-134 82-189 (201)
242 COG0801 FolK 7,8-dihydro-6-hyd 58.3 21 0.00046 29.4 4.7 29 277-305 3-31 (160)
243 COG2099 CobK Precorrin-6x redu 57.8 24 0.00052 31.4 5.2 37 6-47 2-38 (257)
244 PLN02939 transferase, transfer 57.4 20 0.00043 38.6 5.4 46 338-385 837-889 (977)
245 PRK08506 replicative DNA helic 57.3 72 0.0016 31.8 9.2 39 9-47 195-233 (472)
246 cd01121 Sms Sms (bacterial rad 57.1 13 0.00027 35.7 3.7 42 8-49 84-125 (372)
247 PRK07206 hypothetical protein; 57.1 36 0.00077 33.1 7.0 33 7-44 3-35 (416)
248 TIGR02329 propionate_PrpR prop 57.0 74 0.0016 32.2 9.3 43 91-139 131-173 (526)
249 TIGR02700 flavo_MJ0208 archaeo 57.0 17 0.00037 32.3 4.4 44 8-51 1-46 (234)
250 PRK11519 tyrosine kinase; Prov 56.9 1.3E+02 0.0027 31.9 11.4 38 6-43 525-564 (719)
251 TIGR02655 circ_KaiC circadian 56.9 51 0.0011 32.9 8.1 45 6-50 263-307 (484)
252 PF10093 DUF2331: Uncharacteri 56.8 34 0.00075 32.6 6.4 40 340-382 246-288 (374)
253 PRK10416 signal recognition pa 56.8 1.1E+02 0.0023 28.7 9.7 41 6-46 114-154 (318)
254 PRK08760 replicative DNA helic 56.6 63 0.0014 32.2 8.6 39 9-47 232-271 (476)
255 PLN02939 transferase, transfer 56.4 75 0.0016 34.5 9.4 41 4-44 479-525 (977)
256 PF07015 VirC1: VirC1 protein; 56.3 28 0.00061 30.7 5.4 40 8-47 3-43 (231)
257 PRK12311 rpsB 30S ribosomal pr 56.2 24 0.00052 33.0 5.3 33 107-139 151-185 (326)
258 PRK12342 hypothetical protein; 56.1 26 0.00056 31.6 5.3 30 108-137 109-144 (254)
259 PF01012 ETF: Electron transfe 55.6 58 0.0012 26.9 7.2 103 9-135 2-120 (164)
260 cd01421 IMPCH Inosine monophos 55.4 35 0.00076 29.0 5.6 38 21-65 11-48 (187)
261 PRK06321 replicative DNA helic 55.1 1.1E+02 0.0024 30.5 10.0 39 9-47 229-268 (472)
262 PRK06904 replicative DNA helic 54.9 34 0.00074 34.0 6.5 39 9-47 224-263 (472)
263 TIGR02113 coaC_strep phosphopa 54.8 17 0.00038 30.7 3.8 43 8-51 2-44 (177)
264 PF09001 DUF1890: Domain of un 54.8 21 0.00046 28.4 3.9 32 20-51 13-44 (139)
265 TIGR01285 nifN nitrogenase mol 54.6 86 0.0019 30.8 9.2 87 6-135 311-397 (432)
266 TIGR00416 sms DNA repair prote 54.5 20 0.00042 35.5 4.7 42 8-49 96-137 (454)
267 cd02071 MM_CoA_mut_B12_BD meth 54.5 27 0.00058 27.3 4.7 37 8-44 1-37 (122)
268 PRK10037 cell division protein 54.2 22 0.00048 31.8 4.7 37 7-43 2-39 (250)
269 TIGR02699 archaeo_AfpA archaeo 54.1 20 0.00043 30.2 4.0 43 8-51 1-45 (174)
270 COG1066 Sms Predicted ATP-depe 53.9 8.9 0.00019 36.7 2.1 42 8-50 95-136 (456)
271 PRK11823 DNA repair protein Ra 53.5 16 0.00035 36.0 3.9 42 8-49 82-123 (446)
272 KOG2941 Beta-1,4-mannosyltrans 52.9 2.1E+02 0.0045 27.1 11.2 124 5-142 11-142 (444)
273 PRK05632 phosphate acetyltrans 52.7 1.4E+02 0.0029 31.5 10.7 103 8-140 4-117 (684)
274 TIGR00345 arsA arsenite-activa 52.6 60 0.0013 29.8 7.3 23 24-46 3-25 (284)
275 COG0438 RfaG Glycosyltransfera 52.2 1.8E+02 0.0039 26.2 12.2 59 338-403 257-322 (381)
276 TIGR03880 KaiC_arch_3 KaiC dom 52.1 39 0.00085 29.6 5.9 44 7-50 17-60 (224)
277 PF01591 6PF2K: 6-phosphofruct 52.0 1.1E+02 0.0024 26.9 8.5 112 5-135 11-128 (222)
278 TIGR00725 conserved hypothetic 51.5 1.2E+02 0.0026 25.1 8.2 99 263-385 21-124 (159)
279 PF02826 2-Hacid_dh_C: D-isome 51.5 60 0.0013 27.3 6.7 107 274-424 36-143 (178)
280 TIGR02370 pyl_corrinoid methyl 50.9 34 0.00074 29.4 5.1 103 5-133 83-190 (197)
281 PF07355 GRDB: Glycine/sarcosi 50.8 34 0.00073 32.1 5.2 28 108-135 80-117 (349)
282 PRK12446 undecaprenyldiphospho 50.2 46 0.00099 31.6 6.4 27 354-382 91-120 (352)
283 PF01695 IstB_IS21: IstB-like 50.0 26 0.00057 29.6 4.2 47 5-51 46-92 (178)
284 COG2085 Predicted dinucleotide 50.0 29 0.00063 30.1 4.4 34 6-44 1-34 (211)
285 PRK00784 cobyric acid synthase 49.8 1.2E+02 0.0026 30.4 9.5 35 8-42 4-39 (488)
286 COG2874 FlaH Predicted ATPases 49.5 1.4E+02 0.0031 26.2 8.4 34 11-44 33-66 (235)
287 PRK05579 bifunctional phosphop 49.4 25 0.00055 34.0 4.5 46 5-51 5-50 (399)
288 COG2910 Putative NADH-flavin r 49.2 17 0.00037 30.8 2.8 34 7-44 1-34 (211)
289 PF13460 NAD_binding_10: NADH( 49.1 45 0.00098 27.8 5.6 44 14-65 4-47 (183)
290 TIGR01007 eps_fam capsular exo 48.9 36 0.00079 29.2 5.1 37 7-43 17-55 (204)
291 PRK13234 nifH nitrogenase redu 48.7 34 0.00075 31.6 5.1 37 5-41 3-39 (295)
292 PF09314 DUF1972: Domain of un 48.3 28 0.00062 29.6 4.1 56 7-65 2-62 (185)
293 PRK03359 putative electron tra 47.9 42 0.00092 30.2 5.4 31 108-138 112-148 (256)
294 TIGR03877 thermo_KaiC_1 KaiC d 47.4 1.9E+02 0.0042 25.5 9.6 43 6-48 21-63 (237)
295 TIGR00521 coaBC_dfp phosphopan 47.2 25 0.00054 34.0 4.0 45 6-51 3-47 (390)
296 PRK09165 replicative DNA helic 47.0 1.1E+02 0.0023 30.8 8.5 40 9-48 220-274 (497)
297 COG2109 BtuR ATP:corrinoid ade 46.6 1.9E+02 0.0041 24.8 9.7 97 9-119 31-133 (198)
298 cd01985 ETF The electron trans 46.4 1.2E+02 0.0025 25.6 7.7 27 108-134 91-120 (181)
299 PRK13768 GTPase; Provisional 45.8 96 0.0021 27.9 7.4 38 8-45 4-41 (253)
300 PRK07773 replicative DNA helic 45.7 1.2E+02 0.0026 33.0 9.3 40 9-48 220-260 (886)
301 PF15092 UPF0728: Uncharacteri 45.7 60 0.0013 23.5 4.6 46 1-46 1-50 (88)
302 PF10727 Rossmann-like: Rossma 45.5 73 0.0016 25.2 5.8 34 5-43 9-42 (127)
303 PF06180 CbiK: Cobalt chelatas 45.5 25 0.00055 31.8 3.6 38 276-313 2-42 (262)
304 cd02034 CooC The accessory pro 44.7 54 0.0012 25.4 4.9 37 8-44 1-37 (116)
305 cd03466 Nitrogenase_NifN_2 Nit 44.3 1.2E+02 0.0025 29.8 8.3 25 108-135 372-396 (429)
306 PF08323 Glyco_transf_5: Starc 44.0 23 0.0005 31.7 3.1 24 21-44 20-43 (245)
307 PRK13011 formyltetrahydrofolat 43.8 1.4E+02 0.003 27.5 8.1 101 5-135 88-193 (286)
308 PRK05636 replicative DNA helic 43.7 1.4E+02 0.003 30.1 8.7 39 9-47 268-307 (505)
309 COG0240 GpsA Glycerol-3-phosph 43.5 34 0.00073 32.0 4.1 41 6-51 1-42 (329)
310 PRK13236 nitrogenase reductase 43.5 48 0.001 30.6 5.2 35 7-41 6-41 (296)
311 PRK09841 cryptic autophosphory 43.2 2.5E+02 0.0054 29.8 11.0 38 6-43 530-569 (726)
312 PRK04148 hypothetical protein; 43.0 52 0.0011 26.3 4.6 33 5-43 16-48 (134)
313 PF03446 NAD_binding_2: NAD bi 43.0 27 0.00058 28.9 3.2 31 6-41 1-31 (163)
314 cd02040 NifH NifH gene encodes 42.8 44 0.00096 30.1 4.9 35 8-42 3-37 (270)
315 PLN02470 acetolactate synthase 42.8 44 0.00096 34.3 5.4 28 356-383 76-109 (585)
316 PRK13982 bifunctional SbtC-lik 42.8 34 0.00074 33.9 4.3 45 6-51 70-114 (475)
317 PF06925 MGDG_synth: Monogalac 42.6 84 0.0018 26.1 6.2 23 19-41 1-24 (169)
318 COG0287 TyrA Prephenate dehydr 42.6 58 0.0013 29.8 5.5 42 5-51 2-43 (279)
319 TIGR03453 partition_RepA plasm 42.5 43 0.00093 32.3 5.0 39 5-43 102-142 (387)
320 TIGR00745 apbA_panE 2-dehydrop 41.8 26 0.00057 32.0 3.3 34 25-63 5-38 (293)
321 PF10649 DUF2478: Protein of u 41.3 2.1E+02 0.0045 23.7 9.9 35 10-44 2-37 (159)
322 cd01840 SGNH_hydrolase_yrhL_li 41.2 76 0.0017 25.6 5.6 39 274-313 50-88 (150)
323 PF14626 RNase_Zc3h12a_2: Zc3h 41.1 35 0.00075 26.4 3.1 32 20-51 9-40 (122)
324 cd02069 methionine_synthase_B1 41.1 60 0.0013 28.4 5.1 40 5-44 87-126 (213)
325 TIGR00640 acid_CoA_mut_C methy 41.0 1.8E+02 0.004 23.1 8.8 39 5-43 1-39 (132)
326 CHL00194 ycf39 Ycf39; Provisio 40.8 67 0.0015 29.8 5.9 33 7-43 1-33 (317)
327 PF02572 CobA_CobO_BtuR: ATP:c 40.8 2.2E+02 0.0048 23.9 9.0 97 7-118 4-106 (172)
328 PRK00881 purH bifunctional pho 40.7 95 0.0021 31.0 6.9 56 6-71 3-60 (513)
329 TIGR00750 lao LAO/AO transport 40.6 2E+02 0.0043 26.6 8.9 41 6-46 34-74 (300)
330 PLN02285 methionyl-tRNA formyl 40.4 1.7E+02 0.0036 27.7 8.4 38 3-45 3-46 (334)
331 cd01018 ZntC Metal binding pro 40.3 2.8E+02 0.0061 25.0 9.8 77 37-139 172-250 (266)
332 PRK10916 ADP-heptose:LPS hepto 40.2 37 0.0008 32.1 4.1 101 8-137 182-288 (348)
333 PF02558 ApbA: Ketopantoate re 40.2 27 0.00058 28.3 2.7 34 25-63 12-45 (151)
334 PF01656 CbiA: CobQ/CobB/MinD/ 40.1 46 0.001 28.0 4.4 35 10-44 2-37 (195)
335 TIGR01918 various_sel_PB selen 40.1 62 0.0013 31.3 5.3 28 108-135 76-113 (431)
336 KOG0081 GTPase Rab27, small G 40.1 90 0.002 25.7 5.5 35 106-140 122-166 (219)
337 COG0569 TrkA K+ transport syst 40.0 36 0.00078 30.0 3.7 35 7-46 1-35 (225)
338 KOG3062 RNA polymerase II elon 39.9 65 0.0014 28.4 4.9 34 8-41 3-37 (281)
339 TIGR01917 gly_red_sel_B glycin 39.9 62 0.0013 31.3 5.3 29 108-136 76-114 (431)
340 PRK15469 ghrA bifunctional gly 39.9 2.6E+02 0.0056 26.1 9.5 104 274-423 136-241 (312)
341 PRK00771 signal recognition pa 39.8 60 0.0013 31.9 5.4 43 5-47 94-136 (437)
342 cd01983 Fer4_NifH The Fer4_Nif 39.8 69 0.0015 22.9 4.8 33 9-41 2-34 (99)
343 COG2084 MmsB 3-hydroxyisobutyr 39.7 42 0.00091 30.8 4.1 40 7-51 1-42 (286)
344 cd02065 B12-binding_like B12 b 39.6 62 0.0013 25.0 4.7 36 9-44 2-37 (125)
345 PRK13869 plasmid-partitioning 39.4 57 0.0012 31.7 5.2 37 6-42 120-158 (405)
346 PRK06719 precorrin-2 dehydroge 39.4 50 0.0011 27.2 4.2 35 6-45 13-47 (157)
347 TIGR00355 purH phosphoribosyla 39.3 77 0.0017 31.5 5.9 85 21-117 11-100 (511)
348 PRK06932 glycerate dehydrogena 39.2 1E+02 0.0022 28.7 6.7 101 274-423 147-248 (314)
349 PF07991 IlvN: Acetohydroxy ac 39.2 28 0.0006 28.9 2.6 50 6-65 4-55 (165)
350 PRK13230 nitrogenase reductase 38.9 56 0.0012 29.7 4.9 35 7-41 2-36 (279)
351 PRK11199 tyrA bifunctional cho 38.9 3.1E+02 0.0066 26.4 10.1 33 6-43 98-131 (374)
352 PHA02518 ParA-like protein; Pr 38.9 63 0.0014 27.7 5.1 37 8-44 2-39 (211)
353 PHA02519 plasmid partition pro 38.8 58 0.0013 31.4 5.1 37 5-41 104-142 (387)
354 cd01141 TroA_d Periplasmic bin 38.7 45 0.00098 28.0 4.0 29 108-136 69-99 (186)
355 COG3349 Uncharacterized conser 38.3 33 0.00073 33.9 3.4 33 7-44 1-33 (485)
356 cd03412 CbiK_N Anaerobic cobal 38.3 56 0.0012 25.8 4.2 38 276-313 2-41 (127)
357 cd01715 ETF_alpha The electron 38.1 2.3E+02 0.005 23.4 9.4 30 108-137 83-115 (168)
358 PF06792 UPF0261: Uncharacteri 37.8 2.6E+02 0.0056 27.1 9.1 95 273-387 183-281 (403)
359 PF00448 SRP54: SRP54-type pro 37.7 58 0.0012 28.0 4.5 39 8-46 3-41 (196)
360 COG1348 NifH Nitrogenase subun 37.7 75 0.0016 28.2 5.0 41 7-47 2-42 (278)
361 PF03721 UDPG_MGDP_dh_N: UDP-g 37.7 53 0.0011 27.9 4.2 33 7-44 1-33 (185)
362 PRK02399 hypothetical protein; 37.7 3.1E+02 0.0067 26.6 9.5 90 274-385 185-280 (406)
363 PRK14618 NAD(P)H-dependent gly 37.5 49 0.0011 31.0 4.4 34 5-43 3-36 (328)
364 COG4081 Uncharacterized protei 37.4 60 0.0013 25.6 3.9 44 8-51 5-49 (148)
365 COG1893 ApbA Ketopantoate redu 37.3 56 0.0012 30.4 4.7 50 7-66 1-50 (307)
366 PRK06835 DNA replication prote 37.3 50 0.0011 31.1 4.3 45 7-51 184-228 (329)
367 TIGR01969 minD_arch cell divis 37.2 63 0.0014 28.6 4.9 36 8-43 2-38 (251)
368 PLN02496 probable phosphopanto 37.1 44 0.00095 29.0 3.6 45 5-51 18-62 (209)
369 cd07025 Peptidase_S66 LD-Carbo 37.0 69 0.0015 29.4 5.1 76 287-386 45-122 (282)
370 TIGR01501 MthylAspMutase methy 36.8 86 0.0019 25.1 5.0 40 7-46 2-41 (134)
371 PRK06027 purU formyltetrahydro 36.8 2.1E+02 0.0045 26.3 8.2 55 5-67 88-146 (286)
372 PRK13849 putative crown gall t 36.7 59 0.0013 28.8 4.5 37 8-44 3-40 (231)
373 PRK00094 gpsA NAD(P)H-dependen 36.5 43 0.00094 31.2 3.9 33 6-43 1-33 (325)
374 PRK08125 bifunctional UDP-gluc 36.4 1.8E+02 0.0038 30.5 8.6 30 7-41 1-30 (660)
375 PRK12724 flagellar biosynthesi 36.3 1.8E+02 0.004 28.4 8.0 40 7-46 224-264 (432)
376 COG0143 MetG Methionyl-tRNA sy 35.9 73 0.0016 32.4 5.4 30 17-46 22-54 (558)
377 PRK00207 sulfur transfer compl 35.7 70 0.0015 25.3 4.3 40 7-46 1-44 (128)
378 TIGR03837 efp_adjacent_2 conse 35.7 1.6E+02 0.0034 28.1 7.1 39 340-381 244-285 (371)
379 COG1192 Soj ATPases involved i 35.7 59 0.0013 29.2 4.5 38 7-44 3-42 (259)
380 TIGR03029 EpsG chain length de 35.6 82 0.0018 28.5 5.4 36 7-42 103-140 (274)
381 TIGR01380 glut_syn glutathione 35.4 67 0.0015 29.9 4.9 40 7-46 1-43 (312)
382 PRK05784 phosphoribosylamine-- 35.3 46 0.001 33.2 3.9 31 7-42 1-33 (486)
383 PRK06487 glycerate dehydrogena 35.2 1.4E+02 0.003 27.9 6.9 100 274-423 148-248 (317)
384 PRK08410 2-hydroxyacid dehydro 35.2 1.6E+02 0.0034 27.5 7.3 100 274-423 145-247 (311)
385 PRK13235 nifH nitrogenase redu 35.1 64 0.0014 29.3 4.7 35 7-41 2-36 (274)
386 TIGR03026 NDP-sugDHase nucleot 34.9 54 0.0012 31.9 4.3 32 7-43 1-32 (411)
387 COG0467 RAD55 RecA-superfamily 34.7 78 0.0017 28.5 5.1 45 6-50 23-67 (260)
388 PLN00016 RNA-binding protein; 34.6 52 0.0011 31.5 4.2 37 6-44 52-90 (378)
389 COG2230 Cfa Cyclopropane fatty 34.3 47 0.001 30.3 3.5 37 365-402 82-121 (283)
390 PF13450 NAD_binding_8: NAD(P) 34.3 52 0.0011 22.6 3.0 21 24-44 9-29 (68)
391 COG0503 Apt Adenine/guanine ph 34.2 1E+02 0.0022 26.1 5.3 28 108-135 53-82 (179)
392 TIGR00639 PurN phosphoribosylg 34.2 3E+02 0.0064 23.5 10.1 51 7-65 1-57 (190)
393 cd03114 ArgK-like The function 34.2 2.5E+02 0.0055 22.7 11.1 35 9-43 2-36 (148)
394 PRK13604 luxD acyl transferase 34.1 87 0.0019 29.1 5.2 35 6-40 36-70 (307)
395 PF00070 Pyr_redox: Pyridine n 34.1 62 0.0013 22.8 3.5 23 22-44 10-32 (80)
396 COG2210 Peroxiredoxin family p 34.1 68 0.0015 25.7 3.9 42 10-51 7-48 (137)
397 PRK10422 lipopolysaccharide co 34.0 1.3E+02 0.0028 28.5 6.7 28 108-137 262-289 (352)
398 cd03409 Chelatase_Class_II Cla 33.9 1.8E+02 0.0039 21.3 6.3 36 277-312 2-40 (101)
399 PF04413 Glycos_transf_N: 3-De 33.8 1.9E+02 0.0041 24.6 7.0 97 9-135 23-124 (186)
400 TIGR01761 thiaz-red thiazoliny 33.8 3.3E+02 0.0071 25.8 9.2 63 344-406 52-121 (343)
401 PRK05541 adenylylsulfate kinas 33.7 2.7E+02 0.0059 23.0 11.9 47 1-47 1-48 (176)
402 PRK04940 hypothetical protein; 33.6 1.3E+02 0.0028 25.5 5.7 31 108-138 60-91 (180)
403 PRK14092 2-amino-4-hydroxy-6-h 33.6 1E+02 0.0022 25.6 5.1 29 274-302 6-34 (163)
404 COG4126 Hydantoin racemase [Am 33.5 1.3E+02 0.0029 26.2 5.8 27 108-134 174-202 (230)
405 TIGR02114 coaB_strep phosphopa 33.4 43 0.00093 29.6 3.1 19 24-42 29-47 (227)
406 TIGR03018 pepcterm_TyrKin exop 33.0 1.1E+02 0.0023 26.5 5.5 40 5-44 33-75 (207)
407 PRK10818 cell division inhibit 33.0 74 0.0016 28.7 4.7 36 9-44 5-41 (270)
408 cd01017 AdcA Metal binding pro 32.9 2.6E+02 0.0057 25.4 8.3 41 93-136 208-250 (282)
409 cd03793 GT1_Glycogen_synthase_ 32.6 36 0.00079 34.5 2.7 37 347-385 467-507 (590)
410 PRK14974 cell division protein 32.6 94 0.002 29.3 5.3 42 5-46 139-180 (336)
411 PRK09219 xanthine phosphoribos 32.6 1.1E+02 0.0025 26.1 5.4 28 108-135 50-79 (189)
412 PRK06270 homoserine dehydrogen 32.5 3E+02 0.0065 26.0 8.8 59 347-406 80-150 (341)
413 cd00861 ProRS_anticodon_short 32.4 86 0.0019 22.7 4.2 56 7-64 2-60 (94)
414 COG0205 PfkA 6-phosphofructoki 32.4 1.6E+02 0.0035 27.9 6.8 113 6-135 2-124 (347)
415 PRK00923 sirohydrochlorin coba 32.4 2.4E+02 0.0052 21.9 8.0 35 276-310 3-39 (126)
416 TIGR03371 cellulose_yhjQ cellu 32.3 78 0.0017 28.0 4.7 36 9-44 4-40 (246)
417 PRK13185 chlL protochlorophyll 32.2 78 0.0017 28.6 4.7 34 8-41 4-37 (270)
418 TIGR02400 trehalose_OtsA alpha 32.2 84 0.0018 31.1 5.2 65 344-423 342-417 (456)
419 COG2099 CobK Precorrin-6x redu 32.1 3.5E+02 0.0077 24.3 8.4 99 293-422 117-219 (257)
420 COG0771 MurD UDP-N-acetylmuram 32.0 79 0.0017 31.1 4.8 37 5-46 6-42 (448)
421 PF01380 SIS: SIS domain SIS d 31.9 1E+02 0.0022 23.8 4.9 36 16-51 62-97 (131)
422 PF04244 DPRP: Deoxyribodipyri 31.9 46 0.00099 29.4 2.9 26 19-44 47-72 (224)
423 PRK12825 fabG 3-ketoacyl-(acyl 31.7 98 0.0021 27.0 5.3 39 1-43 1-39 (249)
424 PRK06731 flhF flagellar biosyn 31.6 4E+02 0.0087 24.2 10.3 41 6-46 75-115 (270)
425 cd03115 SRP The signal recogni 31.5 1.1E+02 0.0023 25.4 5.1 38 9-46 3-40 (173)
426 PLN02695 GDP-D-mannose-3',5'-e 31.4 1E+02 0.0022 29.5 5.6 34 5-42 20-53 (370)
427 PRK05973 replicative DNA helic 31.3 98 0.0021 27.6 5.0 41 8-48 66-106 (237)
428 TIGR02195 heptsyl_trn_II lipop 31.2 67 0.0014 30.1 4.2 99 8-138 176-279 (334)
429 PRK05299 rpsB 30S ribosomal pr 31.2 1.6E+02 0.0035 26.6 6.4 33 107-139 156-190 (258)
430 PF03720 UDPG_MGDP_dh_C: UDP-g 31.0 62 0.0013 24.5 3.2 29 21-49 17-45 (106)
431 PRK13232 nifH nitrogenase redu 31.0 79 0.0017 28.7 4.5 35 7-41 2-36 (273)
432 TIGR01689 EcbF-BcbF capsule bi 30.9 1.6E+02 0.0035 23.2 5.6 25 22-46 28-52 (126)
433 PF00282 Pyridoxal_deC: Pyrido 30.8 86 0.0019 30.1 4.9 80 342-423 84-186 (373)
434 TIGR01915 npdG NADPH-dependent 30.8 56 0.0012 28.5 3.4 31 7-42 1-32 (219)
435 PRK00421 murC UDP-N-acetylmura 30.7 73 0.0016 31.6 4.5 33 4-41 5-38 (461)
436 CHL00175 minD septum-site dete 30.7 95 0.0021 28.3 5.0 38 6-43 14-53 (281)
437 cd02036 MinD Bacterial cell di 30.7 89 0.0019 25.8 4.5 35 9-43 2-37 (179)
438 cd07037 TPP_PYR_MenD Pyrimidin 30.7 47 0.001 27.5 2.7 26 359-384 63-94 (162)
439 PRK00005 fmt methionyl-tRNA fo 30.6 2.7E+02 0.0058 25.9 8.0 32 7-43 1-32 (309)
440 TIGR03837 efp_adjacent_2 conse 30.5 66 0.0014 30.5 3.8 53 15-67 9-69 (371)
441 PF13614 AAA_31: AAA domain; P 30.4 1E+02 0.0022 24.9 4.7 38 9-46 3-41 (157)
442 PF02702 KdpD: Osmosensitive K 30.4 1E+02 0.0022 26.7 4.6 40 5-44 4-43 (211)
443 COG2236 Predicted phosphoribos 30.4 1.8E+02 0.0038 25.0 6.1 48 90-138 12-62 (192)
444 cd03416 CbiX_SirB_N Sirohydroc 30.3 2E+02 0.0042 21.3 5.9 35 277-311 2-38 (101)
445 COG0859 RfaF ADP-heptose:LPS h 30.0 1.4E+02 0.0031 28.0 6.2 99 6-138 175-279 (334)
446 PRK03767 NAD(P)H:quinone oxido 29.9 1E+02 0.0022 26.4 4.9 38 6-43 1-40 (200)
447 TIGR00730 conserved hypothetic 29.8 1.7E+02 0.0036 24.8 5.9 102 263-383 22-133 (178)
448 PRK03094 hypothetical protein; 29.7 50 0.0011 23.7 2.3 20 23-42 10-29 (80)
449 COG4394 Uncharacterized protei 29.7 1.6E+02 0.0034 27.0 5.8 40 339-381 239-281 (370)
450 PRK05708 2-dehydropantoate 2-r 29.5 63 0.0014 30.0 3.7 33 6-43 2-34 (305)
451 PRK00652 lpxK tetraacyldisacch 29.3 92 0.002 29.3 4.7 37 8-44 51-89 (325)
452 PF10093 DUF2331: Uncharacteri 29.2 65 0.0014 30.8 3.6 54 15-68 9-70 (374)
453 PRK10669 putative cation:proto 29.2 3.2E+02 0.0069 27.9 9.0 119 275-423 418-548 (558)
454 PRK12377 putative replication 29.1 81 0.0018 28.3 4.1 45 7-51 102-146 (248)
455 PF06032 DUF917: Protein of un 29.0 64 0.0014 30.7 3.6 36 11-46 15-50 (353)
456 PRK14620 NAD(P)H-dependent gly 28.9 64 0.0014 30.2 3.7 32 7-43 1-32 (326)
457 PLN02891 IMP cyclohydrolase 28.8 1.4E+02 0.0031 29.9 5.9 43 22-71 34-78 (547)
458 PF06204 CBM_X: Putative carbo 28.8 19 0.0004 24.8 -0.0 24 344-367 23-46 (66)
459 PRK08309 short chain dehydroge 28.7 82 0.0018 26.5 3.9 32 7-43 1-32 (177)
460 PRK08939 primosomal protein Dn 28.5 75 0.0016 29.6 3.9 45 7-51 157-201 (306)
461 PF13524 Glyco_trans_1_2: Glyc 28.4 1E+02 0.0022 22.2 4.0 22 363-384 9-30 (92)
462 TIGR00313 cobQ cobyric acid sy 28.4 6.1E+02 0.013 25.3 12.1 28 16-43 9-36 (475)
463 PF02635 DrsE: DsrE/DsrF-like 28.4 2.2E+02 0.0049 21.4 6.2 45 7-51 1-51 (122)
464 PRK06222 ferredoxin-NADP(+) re 28.3 1.3E+02 0.0029 27.4 5.5 38 7-46 99-136 (281)
465 PF12695 Abhydrolase_5: Alpha/ 28.3 1.1E+02 0.0024 23.9 4.6 31 10-40 2-32 (145)
466 PRK11889 flhF flagellar biosyn 28.2 1.2E+02 0.0027 29.4 5.2 41 6-46 241-281 (436)
467 cd01124 KaiC KaiC is a circadi 28.2 1.3E+02 0.0029 25.0 5.3 41 9-49 2-42 (187)
468 cd02117 NifH_like This family 28.0 1E+02 0.0022 26.6 4.6 33 9-41 3-35 (212)
469 PRK04885 ppnK inorganic polyph 28.0 48 0.001 30.1 2.5 29 354-384 35-69 (265)
470 PRK12827 short chain dehydroge 28.0 1.3E+02 0.0029 26.3 5.4 37 1-41 1-37 (249)
471 PLN00141 Tic62-NAD(P)-related 27.9 1.3E+02 0.0029 26.6 5.4 34 5-42 16-49 (251)
472 PRK05234 mgsA methylglyoxal sy 27.8 1.8E+02 0.004 23.5 5.6 97 5-135 3-112 (142)
473 PF10087 DUF2325: Uncharacteri 27.7 1.2E+02 0.0026 22.4 4.3 36 108-143 48-89 (97)
474 PF03698 UPF0180: Uncharacteri 27.5 57 0.0012 23.4 2.3 22 23-44 10-31 (80)
475 PRK06756 flavodoxin; Provision 27.4 1.3E+02 0.0027 24.3 4.7 37 6-42 1-38 (148)
476 TIGR01287 nifH nitrogenase iro 27.3 1E+02 0.0022 27.9 4.6 34 8-41 2-35 (275)
477 COG0452 Dfp Phosphopantothenoy 27.2 71 0.0015 30.9 3.6 44 7-51 5-48 (392)
478 PRK13705 plasmid-partitioning 27.1 1.1E+02 0.0023 29.7 4.8 34 8-41 108-142 (388)
479 PF07755 DUF1611: Protein of u 27.1 1.1E+02 0.0024 28.3 4.6 47 5-51 111-158 (301)
480 PF05728 UPF0227: Uncharacteri 26.8 1.5E+02 0.0032 25.3 5.1 29 110-138 61-90 (187)
481 COG0223 Fmt Methionyl-tRNA for 26.6 93 0.002 28.9 4.1 37 6-47 1-37 (307)
482 PF02571 CbiJ: Precorrin-6x re 26.6 3.2E+02 0.007 24.5 7.5 100 261-382 117-225 (249)
483 COG0665 DadA Glycine/D-amino a 26.5 81 0.0018 30.1 4.0 35 5-44 3-37 (387)
484 PRK07952 DNA replication prote 26.5 98 0.0021 27.7 4.1 42 8-49 101-142 (244)
485 COG0059 IlvC Ketol-acid reduct 26.3 94 0.002 28.7 3.9 51 5-65 17-69 (338)
486 PRK11780 isoprenoid biosynthes 26.3 1.5E+02 0.0032 26.0 5.2 38 7-44 2-43 (217)
487 TIGR03574 selen_PSTK L-seryl-t 26.3 4.6E+02 0.01 23.2 10.9 37 9-45 2-38 (249)
488 cd05017 SIS_PGI_PMI_1 The memb 26.2 2.3E+02 0.0051 21.7 5.9 50 14-68 50-100 (119)
489 PRK11914 diacylglycerol kinase 26.2 1.2E+02 0.0026 28.0 5.0 25 360-384 68-96 (306)
490 PRK08163 salicylate hydroxylas 26.2 78 0.0017 30.4 3.8 36 1-43 1-36 (396)
491 TIGR02201 heptsyl_trn_III lipo 26.1 4.6E+02 0.01 24.5 9.0 29 108-138 260-288 (344)
492 PLN02350 phosphogluconate dehy 26.1 68 0.0015 32.1 3.3 37 1-42 1-37 (493)
493 COG2120 Uncharacterized protei 26.0 1.2E+02 0.0025 27.0 4.6 37 5-42 9-46 (237)
494 PRK06718 precorrin-2 dehydroge 26.0 1.1E+02 0.0023 26.5 4.2 35 5-44 9-43 (202)
495 TIGR02482 PFKA_ATP 6-phosphofr 26.0 60 0.0013 30.1 2.8 39 351-389 86-128 (301)
496 PRK13886 conjugal transfer pro 25.9 1.6E+02 0.0035 26.3 5.3 38 8-45 3-42 (241)
497 PF05762 VWA_CoxE: VWA domain 25.8 1.4E+02 0.0031 26.1 5.1 38 6-43 150-188 (222)
498 TIGR00467 lysS_arch lysyl-tRNA 25.7 1.5E+02 0.0032 30.0 5.6 33 21-53 41-73 (515)
499 PRK08181 transposase; Validate 25.7 1.1E+02 0.0023 27.9 4.3 44 6-49 106-149 (269)
500 PRK02155 ppnK NAD(+)/NADH kina 25.7 64 0.0014 29.8 2.9 30 353-384 62-95 (291)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.3e-62 Score=472.44 Aligned_cols=409 Identities=36% Similarity=0.681 Sum_probs=313.3
Q ss_pred CCCC-CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCC---C---C---CCCceEEEcCCCCCC
Q 036740 1 MEQQ-QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNP---T---P---EDGLSFASFSDGYDD 70 (424)
Q Consensus 1 m~~~-~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~---~---~---~~gi~~~~~~~~~~~ 70 (424)
|+++ ...||+++|+|++||++|++.||+.|+.+|..|||++++.+..++.... . . ...++|..+|++++.
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~ 80 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE 80 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC
Confidence 7866 6789999999999999999999999999999999999998776654210 0 0 012677778888876
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhh
Q 036740 71 GFNSKQNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYF 150 (424)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 150 (424)
+.+...+. ..++..+...+.+.++++++.+... ..+++|||+|.+..|+..+|+++|||.+.|++++++.++.+++.+
T Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 81 DDPRRQDL-DLYLPQLELVGKREIPNLVKRYAEQ-GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CcccccCH-HHHHHHHHHhhhHHHHHHHHHHhcc-CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 65433344 4455666556677777777766432 234599999999999999999999999999999999999888764
Q ss_pred hccCCcccCcC-CccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHh
Q 036740 151 YGYGDLIEGKV-NDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAI 229 (424)
Q Consensus 151 ~~~~~~p~~~~-~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 229 (424)
.+....+...+ ..++.+||+|.++..+++.++.. ...+....+.+.+......++ +++++|||.+||+.....+
T Consensus 159 ~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~a--~~vlvNTf~eLE~~~~~~l 233 (480)
T PLN02555 159 HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHP---SSPYPFLRRAILGQYKNLDKP--FCILIDTFQELEKEIIDYM 233 (480)
T ss_pred hcCCCcccccCCCceeecCCCCCcCHhhCcccccC---CCCchHHHHHHHHHHHhcccC--CEEEEEchHHHhHHHHHHH
Confidence 33212221111 12456899988888888877643 222233344455555566667 8999999999999988887
Q ss_pred h-cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEE
Q 036740 230 D-KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFL 308 (424)
Q Consensus 230 ~-~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i 308 (424)
. ..+++.|||+....... +...+.++++. + +++.+||+++++++||||||||+...+.+++.+++.+|+.++++||
T Consensus 234 ~~~~~v~~iGPl~~~~~~~-~~~~~~~~~~~-~-~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~fl 310 (480)
T PLN02555 234 SKLCPIKPVGPLFKMAKTP-NSDVKGDISKP-A-DDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFL 310 (480)
T ss_pred hhCCCEEEeCcccCccccc-ccccccccccc-c-hhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEE
Confidence 5 23599999997542110 01111222222 2 6899999999988999999999999999999999999999999999
Q ss_pred EEEecCCCCC--ccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeeccccc
Q 036740 309 WVSRESDNKD--KDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT 386 (424)
Q Consensus 309 ~~~~~~~~~~--~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 386 (424)
|+++.. ... .+...+| +++.++..+|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.
T Consensus 311 W~~~~~-~~~~~~~~~~lp----~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~ 385 (480)
T PLN02555 311 WVMRPP-HKDSGVEPHVLP----EEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWG 385 (480)
T ss_pred EEEecC-cccccchhhcCC----hhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCcc
Confidence 998742 111 0112578 888888889999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhhcceeEeeecC--CCccchHHHHHhhhC
Q 036740 387 DQGTNAKIIVDFCKTGVRVKANE--EGIVESDEINRCLEL 424 (424)
Q Consensus 387 DQ~~na~rv~~~~G~G~~l~~~~--~~~~~~~~l~~ai~~ 424 (424)
||+.||+++++++|+|+.+...+ ++.+++++|.++|++
T Consensus 386 DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~ 425 (480)
T PLN02555 386 DQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLE 425 (480)
T ss_pred ccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHH
Confidence 99999999998569999995321 236899999999864
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.4e-62 Score=466.22 Aligned_cols=395 Identities=36% Similarity=0.677 Sum_probs=304.2
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCC-CCCCCcch
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDG-FNSKQNDR 79 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~-~~~~~~~~ 79 (424)
|+ .++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.... ..+++|+.+|+++|.+ .....+.
T Consensus 1 ~~-~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~--~~~i~~~~ipdglp~~~~~~~~~~- 76 (449)
T PLN02173 1 ME-KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDP--SSPISIATISDGYDQGGFSSAGSV- 76 (449)
T ss_pred CC-CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCC--CCCEEEEEcCCCCCCcccccccCH-
Confidence 55 24469999999999999999999999999999999999998766553311 1469999999988873 2333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccC
Q 036740 80 KHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEG 159 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~ 159 (424)
..++..+...+.+.++++++.+... ..+.+|||+|.+..|+..+|+++|||.+.|++++++.+..+++......
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~----- 150 (449)
T PLN02173 77 PEYLQNFKTFGSKTVADIIRKHQST-DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNG----- 150 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcc-CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccC-----
Confidence 5566666666777778887765432 1234999999999999999999999999999998887766654321111
Q ss_pred cCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh-cCCeEEec
Q 036740 160 KVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID-KFNMIAIG 238 (424)
Q Consensus 160 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~vG 238 (424)
...+.+||+|.++..+++.++.. ..........+.+......++ +++++|||.+||+.....+. ..+++.||
T Consensus 151 --~~~~~~pg~p~l~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~~~~~~v~~VG 223 (449)
T PLN02173 151 --SLTLPIKDLPLLELQDLPTFVTP---TGSHLAYFEMVLQQFTNFDKA--DFVLVNSFHDLDLHENELLSKVCPVLTIG 223 (449)
T ss_pred --CccCCCCCCCCCChhhCChhhcC---CCCchHHHHHHHHHHhhhccC--CEEEEeCHHHhhHHHHHHHHhcCCeeEEc
Confidence 11345899988888888876643 111122334444555566677 89999999999999888875 34799999
Q ss_pred cccCCCCCC----CCcccCCCCcC-CCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEec
Q 036740 239 PLVASALLD----GKEQYGGDLCK-NSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRE 313 (424)
Q Consensus 239 pl~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 313 (424)
|+.+....+ .....+.+++. . ..+++.+||+.+++++||||||||+...+.+++.+++.+| ++.+|+|+++.
T Consensus 224 Pl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~ 300 (449)
T PLN02173 224 PTVPSMYLDQQIKSDNDYDLNLFDLK-EAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRA 300 (449)
T ss_pred ccCchhhccccccccccccccccccc-cchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEec
Confidence 997531100 00111112221 1 2256999999999999999999999999999999999999 78899999975
Q ss_pred CCCCCccCCCCchhHHHHHHHHh-CCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccccchhHHH
Q 036740 314 SDNKDKDKDKGEDDVMMKYKEEL-NEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNA 392 (424)
Q Consensus 314 ~~~~~~~~~~lp~~~~~~~~~~~-~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na 392 (424)
. ..+ .+| ++|.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||
T Consensus 301 ~-~~~----~lp----~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na 371 (449)
T PLN02173 301 S-EES----KLP----PGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNA 371 (449)
T ss_pred c-chh----ccc----chHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHH
Confidence 4 333 688 8888787 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeEeeecC-CCccchHHHHHhhhC
Q 036740 393 KIIVDFCKTGVRVKANE-EGIVESDEINRCLEL 424 (424)
Q Consensus 393 ~rv~~~~G~G~~l~~~~-~~~~~~~~l~~ai~~ 424 (424)
+++++.+|+|+.+...+ ++.++.++|+++|++
T Consensus 372 ~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~ 404 (449)
T PLN02173 372 KYIQDVWKVGVRVKAEKESGIAKREEIEFSIKE 404 (449)
T ss_pred HHHHHHhCceEEEeecccCCcccHHHHHHHHHH
Confidence 99997459999997542 235799999999864
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.2e-62 Score=468.97 Aligned_cols=395 Identities=25% Similarity=0.452 Sum_probs=301.7
Q ss_pred CCCC-CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcch
Q 036740 1 MEQQ-QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDR 79 (424)
Q Consensus 1 m~~~-~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 79 (424)
||+. ++.||+++|++++||++|++.||+.|+.||+.|||++++.+..... ....+++|..+|+++|++.......
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~---~~~~~i~~~~ip~glp~~~~~~~~~- 76 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS---DDFTDFQFVTIPESLPESDFKNLGP- 76 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc---cCCCCeEEEeCCCCCCcccccccCH-
Confidence 7744 7789999999999999999999999999999999999987652111 1114699999999888742222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccC-C--c
Q 036740 80 KHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYG-D--L 156 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~-~--~ 156 (424)
..++..+...+...+.++++++..+...+++|||+|.+..|+..+|+++|||.+.|++++++.+.++++...... . .
T Consensus 77 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~ 156 (451)
T PLN02410 77 IEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLA 156 (451)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCC
Confidence 455555655666777777777642213467999999999999999999999999999999998887776432111 0 1
Q ss_pred ccCc--CCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh---c
Q 036740 157 IEGK--VNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID---K 231 (424)
Q Consensus 157 p~~~--~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---~ 231 (424)
+... ......+|++|+++..+++.+... . .......+.... ...++ +++++|||.+||+.+...+. +
T Consensus 157 ~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~---~--~~~~~~~~~~~~-~~~~~--~~vlvNTf~eLE~~~~~~l~~~~~ 228 (451)
T PLN02410 157 PLKEPKGQQNELVPEFHPLRCKDFPVSHWA---S--LESIMELYRNTV-DKRTA--SSVIINTASCLESSSLSRLQQQLQ 228 (451)
T ss_pred CccccccCccccCCCCCCCChHHCcchhcC---C--cHHHHHHHHHHh-hcccC--CEEEEeChHHhhHHHHHHHHhccC
Confidence 1111 112345899887777777654321 1 111222222222 23456 89999999999999988885 3
Q ss_pred CCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEE
Q 036740 232 FNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVS 311 (424)
Q Consensus 232 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~ 311 (424)
.++++|||+...... +.++.+. + .++.+||+++++++||||||||+...+.+++.+++.+|+.++.+|||++
T Consensus 229 ~~v~~vGpl~~~~~~------~~~~~~~-~-~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~ 300 (451)
T PLN02410 229 IPVYPIGPLHLVASA------PTSLLEE-N-KSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVI 300 (451)
T ss_pred CCEEEecccccccCC------Ccccccc-c-hHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 579999999754210 0111221 2 5789999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC-cc-CCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccccchh
Q 036740 312 RESDNKD-KD-KDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQG 389 (424)
Q Consensus 312 ~~~~~~~-~~-~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~ 389 (424)
+.. ... ++ ...+| ++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 301 r~~-~~~~~~~~~~lp----~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 375 (451)
T PLN02410 301 RPG-SVRGSEWIESLP----KEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQK 375 (451)
T ss_pred ccC-cccccchhhcCC----hhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCH
Confidence 743 211 01 12488 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 390 TNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 390 ~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
.||+++++.+|+|+.+.. .+++++|+++|++
T Consensus 376 ~na~~~~~~~~~G~~~~~----~~~~~~v~~av~~ 406 (451)
T PLN02410 376 VNARYLECVWKIGIQVEG----DLDRGAVERAVKR 406 (451)
T ss_pred HHHHHHHHHhCeeEEeCC----cccHHHHHHHHHH
Confidence 999999873599999972 6899999999863
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=8.5e-61 Score=459.63 Aligned_cols=399 Identities=52% Similarity=0.918 Sum_probs=302.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEECccc-hhhhcCCCCCCCCceEEEcCCCCCCCCCC-CCcchHHH
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTR-IGTRVTFAIAISA-YRRMANNPTPEDGLSFASFSDGYDDGFNS-KQNDRKHY 82 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~-~~~i~~~~~~~~gi~~~~~~~~~~~~~~~-~~~~~~~~ 82 (424)
+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+........+++|+.++++++.+... ..+. ..+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~-~~~ 81 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDV-QNR 81 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccH-HHH
Confidence 459999999999999999999999996 7999999999854 22221111111369999999888776432 2333 455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCC
Q 036740 83 MSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVN 162 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 162 (424)
+..+...+.+.+.++++.+... +.+++|||+|.+..|+..+|+++|||.+.|++++++.++.+++.+.+. +
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~-~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---~----- 152 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNG-DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---N----- 152 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhcc-CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC---C-----
Confidence 5666666677788888776422 235699999999999999999999999999999999999887765321 1
Q ss_pred ccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEeccccC
Q 036740 163 DLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLVA 242 (424)
Q Consensus 163 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~ 242 (424)
..+.+||+|.++..+++.++.. ......+.+.+.+..........+++++|||.+||+.....+...+++.|||+..
T Consensus 153 ~~~~iPglp~l~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~VGPL~~ 229 (455)
T PLN02152 153 SVFEFPNLPSLEIRDLPSFLSP---SNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAVGPLLP 229 (455)
T ss_pred CeeecCCCCCCchHHCchhhcC---CCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEEcccCc
Confidence 1345899988888888887643 2222223444545555443310169999999999999988886447999999975
Q ss_pred CCCCCCCcccC-CCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC---
Q 036740 243 SALLDGKEQYG-GDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKD--- 318 (424)
Q Consensus 243 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~--- 318 (424)
....+...... .++++ ...++.+||+++++++||||||||+...+.+++++++.+|+.++.+|||+++.. ...
T Consensus 230 ~~~~~~~~~~~~~~~~~--~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~-~~~~~~ 306 (455)
T PLN02152 230 AEIFTGSESGKDLSVRD--QSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK-LNREAK 306 (455)
T ss_pred cccccccccCccccccc--cchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC-cccccc
Confidence 31101000000 01112 225899999999988999999999999999999999999999999999999753 110
Q ss_pred ---cc--CCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccccchhHHHH
Q 036740 319 ---KD--KDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAK 393 (424)
Q Consensus 319 ---~~--~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 393 (424)
++ ...+| ++|.++..+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+
T Consensus 307 ~~~~~~~~~~~~----~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~ 382 (455)
T PLN02152 307 IEGEEETEIEKI----AGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAK 382 (455)
T ss_pred cccccccccccc----hhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHH
Confidence 00 11246 8898889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 394 IIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 394 rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
++++.+|+|+.+..+.++.++.++|+++|++
T Consensus 383 ~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~ 413 (455)
T PLN02152 383 LLEEIWKTGVRVRENSEGLVERGEIRRCLEA 413 (455)
T ss_pred HHHHHhCceEEeecCcCCcCcHHHHHHHHHH
Confidence 9997458888875432335799999999864
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-60 Score=462.03 Aligned_cols=394 Identities=35% Similarity=0.680 Sum_probs=295.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHH--HHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHH
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARR--LTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHY 82 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
++.||+++|+|++||++|++.||++ |++||++|||++++.+.+.+.........+++..+|++++++.. .+. ..+
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~-~~~ 83 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAP-ETL 83 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCH-HHH
Confidence 6789999999999999999999999 56999999999999988776543221245788888888876642 233 344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcC-
Q 036740 83 MSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKV- 161 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~- 161 (424)
+..+.+.+.+.++++++. .++||||+|.+..|+..+|+++|||.+.|++.+++.+.++++.+......+...+
T Consensus 84 ~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
T PLN02210 84 LKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDL 157 (456)
T ss_pred HHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCccccc
Confidence 555544444444444433 3799999999999999999999999999999999988887765432222222111
Q ss_pred CccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh-cCCeEEeccc
Q 036740 162 NDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID-KFNMIAIGPL 240 (424)
Q Consensus 162 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~vGpl 240 (424)
.+.+.+|+++.+...+++.++.. ..- ......+.+.......+ +++++|||.+||+.....+. ..++++|||+
T Consensus 158 ~~~~~~Pgl~~~~~~dl~~~~~~---~~~-~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl 231 (456)
T PLN02210 158 NQTVELPALPLLEVRDLPSFMLP---SGG-AHFNNLMAEFADCLRYV--KWVLVNSFYELESEIIESMADLKPVIPIGPL 231 (456)
T ss_pred CCeeeCCCCCCCChhhCChhhhc---CCc-hHHHHHHHHHHHhcccC--CEEEEeCHHHHhHHHHHHHhhcCCEEEEccc
Confidence 12356899987788887776543 110 11122222333344556 89999999999999888775 2379999999
Q ss_pred cCCCCCCC-C----cccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCC
Q 036740 241 VASALLDG-K----EQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESD 315 (424)
Q Consensus 241 ~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~ 315 (424)
......+. . ...+.++++. + .++.+|++++++++||||||||+...+.+++++++.+|+.++.+|||+++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~- 308 (456)
T PLN02210 232 VSPFLLGDDEEETLDGKNLDMCKS-D-DCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK- 308 (456)
T ss_pred CchhhcCccccccccccccccccc-c-hHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC-
Confidence 75210000 0 0011122332 3 6899999999989999999999998899999999999999999999999754
Q ss_pred CCCccCCCCchhHHHHHHHHh-CCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHH
Q 036740 316 NKDKDKDKGEDDVMMKYKEEL-NEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKI 394 (424)
Q Consensus 316 ~~~~~~~~lp~~~~~~~~~~~-~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 394 (424)
... ..+ ..+.++. .+|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 309 ~~~----~~~----~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~ 380 (456)
T PLN02210 309 EKA----QNV----QVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARL 380 (456)
T ss_pred ccc----cch----hhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHH
Confidence 221 233 5565555 3788888999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeEeeecC-CCccchHHHHHhhhC
Q 036740 395 IVDFCKTGVRVKANE-EGIVESDEINRCLEL 424 (424)
Q Consensus 395 v~~~~G~G~~l~~~~-~~~~~~~~l~~ai~~ 424 (424)
+++++|+|+.+...+ ++.++.++|+++|++
T Consensus 381 ~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~ 411 (456)
T PLN02210 381 LVDVFGIGVRMRNDAVDGELKVEEVERCIEA 411 (456)
T ss_pred HHHHhCeEEEEeccccCCcCCHHHHHHHHHH
Confidence 986589999997532 347899999999874
No 6
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-60 Score=460.69 Aligned_cols=395 Identities=27% Similarity=0.454 Sum_probs=300.4
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchH
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRK 80 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 80 (424)
|+-.++.||+++|+|++||++|++.||+.|+.+|++|||++++.+.+.+.+......+++|+.+|++++.+. ..+. .
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~-~ 77 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDF-F 77 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccH-H
Confidence 443477899999999999999999999999999999999999988776655321113799999998775422 1223 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhc--cCCccc
Q 036740 81 HYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYG--YGDLIE 158 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~--~~~~p~ 158 (424)
.+...+...+.+.+.++++++... .+++|||+|.+..|+..+|+++|||.+.|++++++.+..+++.+.. ....+.
T Consensus 78 ~l~~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 78 SIENSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHHHHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 344444445667777777776432 2459999999999999999999999999999999888877655321 111111
Q ss_pred C---cCCcc-ccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh----
Q 036740 159 G---KVNDL-IELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID---- 230 (424)
Q Consensus 159 ~---~~~~~-~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---- 230 (424)
. ...++ ..+||+|.++..+++.++.. ........+.+.+......++ +++++|||.+||+.....+.
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~~~~~~ 230 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLPWLIGT---PKARKARFKFWTRTLERTKSL--RWILMNSFKDEEYDDVKNHQASYN 230 (448)
T ss_pred ccccccccccccCCCCCCCChhhCcchhcC---CCcchHHHHHHHHHHhccccC--CEEEEcChhhhCHHHHHHHHhhhc
Confidence 0 01112 25899987888888876543 111112244555555556667 89999999999998766553
Q ss_pred ---cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccc-cCCHHHHHHHHHHHHhcCCC
Q 036740 231 ---KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTIC-VLEKRQVEEIARGLLDSGHP 306 (424)
Q Consensus 231 ---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~-~~~~~~~~~~~~~l~~~~~~ 306 (424)
.++++.|||+...... ...+.+.... + .++.+||+++++++||||||||+. ..+.+++++++.+|+.++++
T Consensus 231 ~~~~~~v~~iGpl~~~~~~---~~~~~~~~~~-~-~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~ 305 (448)
T PLN02562 231 NGQNPQILQIGPLHNQEAT---TITKPSFWEE-D-MSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRP 305 (448)
T ss_pred cccCCCEEEecCccccccc---ccCCCccccc-h-HHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCC
Confidence 2469999999764210 0001111111 2 578899999988899999999986 67889999999999999999
Q ss_pred EEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeeccccc
Q 036740 307 FLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT 386 (424)
Q Consensus 307 ~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 386 (424)
|||+++.. ..+ .+| ++|.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 306 fiW~~~~~-~~~----~l~----~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 376 (448)
T PLN02562 306 FIWVLNPV-WRE----GLP----PGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAG 376 (448)
T ss_pred EEEEEcCC-chh----hCC----HHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCccc
Confidence 99999654 223 578 899888999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 387 DQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 387 DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
||+.||+++++.+|+|+.+. +++.++|.++|++
T Consensus 377 DQ~~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~~ 409 (448)
T PLN02562 377 DQFVNCAYIVDVWKIGVRIS-----GFGQKEVEEGLRK 409 (448)
T ss_pred chHHHHHHHHHHhCceeEeC-----CCCHHHHHHHHHH
Confidence 99999999986469998885 5789999998863
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-60 Score=458.92 Aligned_cols=402 Identities=24% Similarity=0.401 Sum_probs=295.3
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCC-CCCCceEEEcC----CCCCCCCCCC
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPT-PEDGLSFASFS----DGYDDGFNSK 75 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~-~~~gi~~~~~~----~~~~~~~~~~ 75 (424)
|..+.+.||+++|++++||++|++.||+.|+.||+.|||++++.+...+..... ...+++++.+| ++++.+.++.
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~ 80 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESS 80 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccc
Confidence 666688999999999999999999999999999999999999988876653211 11468999887 6777665443
Q ss_pred Ccch---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhh-
Q 036740 76 QNDR---KHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFY- 151 (424)
Q Consensus 76 ~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~- 151 (424)
.+.. ..++....+.+.+.+++++++ .+++|||+|.+..|+..+|+++|||++.|++++++.++.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 3331 123333333444455555543 278999999999999999999999999999999988887664421
Q ss_pred -ccCCcccCcCCccc-cCCCCCC------CCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhH
Q 036740 152 -GYGDLIEGKVNDLI-ELPGLPP------LTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEA 223 (424)
Q Consensus 152 -~~~~~p~~~~~~~~-~~P~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 223 (424)
.....+.. .+.. .+|++++ ++..+++.++.. ..........+.+......++ +++++|||.+||+
T Consensus 155 ~~~~~~~~~--~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~~--~gvlvNTf~eLE~ 227 (472)
T PLN02670 155 MEGGDLRST--AEDFTVVPPWVPFESNIVFRYHEVTKYVEK---TEEDETGPSDSVRFGFAIGGS--DVVIIRSSPEFEP 227 (472)
T ss_pred hhcccCCCc--cccccCCCCcCCCCccccccHHHhhHHHhc---cCccchHHHHHHHHHhhcccC--CEEEEeCHHHHhH
Confidence 11111111 1111 2444311 233455554432 111112223334444455567 8999999999999
Q ss_pred HHHHHhh---cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHH
Q 036740 224 ETLKAID---KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGL 300 (424)
Q Consensus 224 ~~~~~~~---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l 300 (424)
.....+. +.+++.|||+....... ......+. . ..+++.+||+++++++||||||||+...+.+++.+++.+|
T Consensus 228 ~~l~~l~~~~~~~v~~VGPl~~~~~~~-~~~~~~~~--~-~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl 303 (472)
T PLN02670 228 EWFDLLSDLYRKPIIPIGFLPPVIEDD-EEDDTIDV--K-GWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGL 303 (472)
T ss_pred HHHHHHHHhhCCCeEEEecCCcccccc-cccccccc--c-hhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 9988885 34799999997531000 00000000 0 1257999999998899999999999999999999999999
Q ss_pred HhcCCCEEEEEecCCCC-CccCCCCchhHHHHHHHHhCCCeEEe-cccchhhhhccccceeeecccChhHHHHHHhcCCc
Q 036740 301 LDSGHPFLWVSRESDNK-DKDKDKGEDDVMMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVP 378 (424)
Q Consensus 301 ~~~~~~~i~~~~~~~~~-~~~~~~lp~~~~~~~~~~~~~n~~v~-~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP 378 (424)
+.++++|||++....+. .+....+| ++|.+++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||
T Consensus 304 ~~s~~~FlWv~r~~~~~~~~~~~~lp----~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP 379 (472)
T PLN02670 304 EKSETPFFWVLRNEPGTTQNALEMLP----DGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRV 379 (472)
T ss_pred HHCCCCEEEEEcCCcccccchhhcCC----hHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCC
Confidence 99999999999753111 11123689 99999888777775 99999999999999999999999999999999999
Q ss_pred EeecccccchhHHHHHHHhhhcceeEeeecC-CCccchHHHHHhhhC
Q 036740 379 VVAFPQWTDQGTNAKIIVDFCKTGVRVKANE-EGIVESDEINRCLEL 424 (424)
Q Consensus 379 ~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~-~~~~~~~~l~~ai~~ 424 (424)
||++|++.||+.||+++++ +|+|+.+...+ ++.++.++|+++|++
T Consensus 380 ~l~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~ 425 (472)
T PLN02670 380 LILFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRL 425 (472)
T ss_pred EEeCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHH
Confidence 9999999999999999998 99999997642 346899999999874
No 8
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=6.9e-60 Score=453.66 Aligned_cols=384 Identities=21% Similarity=0.336 Sum_probs=281.2
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEc--C--CCCCCCCCCCC
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASF--S--DGYDDGFNSKQ 76 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~--~--~~~~~~~~~~~ 76 (424)
|| .++||+++|++++||++|++.||+.|+.|||+|||++++.+...+.+......++++..+ + ++++.+..+..
T Consensus 1 ~~--~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~ 78 (442)
T PLN02208 1 ME--PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTS 78 (442)
T ss_pred CC--CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCccccc
Confidence 67 889999999999999999999999999999999999999888777653221134566654 4 56766644332
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCc
Q 036740 77 NDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDL 156 (424)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (424)
+. ...+..+.......+.+.++++.+. .++||||+| ++.|+..+|+++|||++.|++++++.+. +++.+....
T Consensus 79 ~l-~~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~-- 151 (442)
T PLN02208 79 DI-PISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKL-- 151 (442)
T ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcccc--
Confidence 23 2222222222222233333333222 378999999 5789999999999999999999987664 333221110
Q ss_pred ccCcCCccccCCCCCC----CCCCCCCCCcCCCCCCCcccccHHHHH-HHHHHHhccCCCeEEEcCchhhhHHHHHHhh-
Q 036740 157 IEGKVNDLIELPGLPP----LTGRDLPSFLDPRNSNDAYSFVLPSFK-EQMEAIVEETDPRILVNTFDALEAETLKAID- 230 (424)
Q Consensus 157 p~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~- 230 (424)
...+||+|. ++..+++.+ .. .......+. +......++ +++++|||.+||+.+...+.
T Consensus 152 -------~~~~pglp~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~--~~vl~Ntf~eLE~~~~~~~~~ 215 (442)
T PLN02208 152 -------GVPPPGYPSSKVLFRENDAHAL-AT------LSIFYKRLYHQITTGLKSC--DVIALRTCKEIEGKFCDYISR 215 (442)
T ss_pred -------CCCCCCCCCcccccCHHHcCcc-cc------cchHHHHHHHHHHhhhccC--CEEEEECHHHHHHHHHHHHHh
Confidence 112577764 233344432 11 111222333 222345566 89999999999999888875
Q ss_pred --cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEE
Q 036740 231 --KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFL 308 (424)
Q Consensus 231 --~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i 308 (424)
.++++.|||+...... . +. .+.++.+||+++++++||||||||+...+.+++.+++.+++.++.+|+
T Consensus 216 ~~~~~v~~vGpl~~~~~~----~------~~-~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~ 284 (442)
T PLN02208 216 QYHKKVLLTGPMFPEPDT----S------KP-LEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFL 284 (442)
T ss_pred hcCCCEEEEeecccCcCC----C------CC-CHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEE
Confidence 3579999999864210 0 11 347899999999989999999999999899999999999999999999
Q ss_pred EEEecCCCCCccCCCCchhHHHHHHHHhCC-CeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccccc
Q 036740 309 WVSRESDNKDKDKDKGEDDVMMKYKEELNE-KGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTD 387 (424)
Q Consensus 309 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~D 387 (424)
|+++...+..+....+| ++|.+++.+ |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|++.|
T Consensus 285 wv~r~~~~~~~~~~~lp----~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~D 360 (442)
T PLN02208 285 IAVKPPRGSSTVQEGLP----EGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSD 360 (442)
T ss_pred EEEeCCCcccchhhhCC----HHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchh
Confidence 99985311111123688 999988764 5555599999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 388 QGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 388 Q~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
|+.||+++++.+|+|+.+++.+++.+++++|+++|++
T Consensus 361 Q~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~ 397 (442)
T PLN02208 361 QVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKS 397 (442)
T ss_pred hHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHH
Confidence 9999998664489999997643345999999999864
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-59 Score=455.38 Aligned_cols=403 Identities=25% Similarity=0.403 Sum_probs=294.3
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcC----CCCCCCCCCCCcch
Q 036740 4 QQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFS----DGYDDGFNSKQNDR 79 (424)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~----~~~~~~~~~~~~~~ 79 (424)
.+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++.+......+++++.+| ++++.+..+..+..
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~ 86 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLP 86 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcc
Confidence 47899999999999999999999999999999999999999887776532211357877654 25555554433321
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCc
Q 036740 80 KHYMSEFKRR---SSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDL 156 (424)
Q Consensus 80 ~~~~~~~~~~---~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (424)
......+... ..+.+.+++++. ..+++|||+|.+..|+..+|+++|||++.|++++++.++++++.+... ..
T Consensus 87 ~~~~~~~~~a~~~~~~~~~~~l~~~----~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~-~~ 161 (477)
T PLN02863 87 PSGFPLMIHALGELYAPLLSWFRSH----PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM-PT 161 (477)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhC----CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc-cc
Confidence 1222223333 233333344332 236799999999999999999999999999999999999988875321 11
Q ss_pred c--cCcCCcc---ccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh-
Q 036740 157 I--EGKVNDL---IELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID- 230 (424)
Q Consensus 157 p--~~~~~~~---~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~- 230 (424)
. .....+. ..+||++.++..+++.++... .........+.+.......+ +++++|||.+||+.....+.
T Consensus 162 ~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 162 KINPDDQNEILSFSKIPNCPKYPWWQISSLYRSY---VEGDPAWEFIKDSFRANIAS--WGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccccccccccCCCCCCCCcChHhCchhhhcc---CccchHHHHHHHHHhhhccC--CEEEEecHHHHHHHHHHHHHh
Confidence 1 0011112 247888888888888765431 11122333444444444455 78999999999999988885
Q ss_pred --c-CCeEEeccccCCCCCCC-CcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCC
Q 036740 231 --K-FNMIAIGPLVASALLDG-KEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHP 306 (424)
Q Consensus 231 --~-~~~~~vGpl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~ 306 (424)
+ .+++.|||++....... ....+.+... ..+++.+||+.+++++||||||||+...+.+++.+++.+|+.++++
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~--~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~ 314 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSV--SVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVH 314 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccc--cHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCc
Confidence 2 47999999975421000 0011111111 1268999999999999999999999989999999999999999999
Q ss_pred EEEEEecCCCC-CccCCCCchhHHHHHHHHhC-CCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeeccc
Q 036740 307 FLWVSRESDNK-DKDKDKGEDDVMMKYKEELN-EKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQ 384 (424)
Q Consensus 307 ~i~~~~~~~~~-~~~~~~lp~~~~~~~~~~~~-~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 384 (424)
|||+++.. .. ..+...+| ++|.++.. .++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 315 flw~~~~~-~~~~~~~~~lp----~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 315 FIWCVKEP-VNEESDYSNIP----SGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred EEEEECCC-cccccchhhCC----HHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 99999753 21 11123588 88887775 45566699999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 385 WTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 385 ~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+.||+.||+++++.+|+|+.+.....+.++.+++.++|+
T Consensus 390 ~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~ 428 (477)
T PLN02863 390 AADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFM 428 (477)
T ss_pred cccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHH
Confidence 999999999976448999999643223568889988875
No 10
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.8e-59 Score=451.20 Aligned_cols=384 Identities=22% Similarity=0.350 Sum_probs=285.1
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEc--C--CCCCCCCCCCC
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASF--S--DGYDDGFNSKQ 76 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~--~--~~~~~~~~~~~ 76 (424)
|. ++.||+++|+|++||++|++.||+.|+++|++|||++++.+...+........+++|..+ | ++++.+.+...
T Consensus 1 ~~--~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~ 78 (446)
T PLN00414 1 MG--SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETAS 78 (446)
T ss_pred CC--CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccc
Confidence 55 789999999999999999999999999999999999999887776543222235788544 4 67777654333
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCc
Q 036740 77 NDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDL 156 (424)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (424)
+........+... ...+...++++... .+|||||+|. +.|+..+|+++|||++.|++++++.++++++.... .
T Consensus 79 ~l~~~~~~~~~~a-~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-~-- 151 (446)
T PLN00414 79 DLPNSTKKPIFDA-MDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-L-- 151 (446)
T ss_pred cchhhHHHHHHHH-HHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-c--
Confidence 3311111122222 22333333333322 3789999995 88999999999999999999999988887662210 0
Q ss_pred ccCcCCccccCCCCCCC----CCCCC--CCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh
Q 036740 157 IEGKVNDLIELPGLPPL----TGRDL--PSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID 230 (424)
Q Consensus 157 p~~~~~~~~~~P~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 230 (424)
...+|++|.. ...+. +.++.. ....+.+......++ +++++|||.+||+.+...+.
T Consensus 152 -------~~~~pg~p~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~~ 213 (446)
T PLN00414 152 -------GFPPPDYPLSKVALRGHDANVCSLFAN---------SHELFGLITKGLKNC--DVVSIRTCVELEGNLCDFIE 213 (446)
T ss_pred -------CCCCCCCCCCcCcCchhhcccchhhcc---------cHHHHHHHHHhhccC--CEEEEechHHHHHHHHHHHH
Confidence 0124666531 11111 111111 123444444555667 89999999999999988875
Q ss_pred ---cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCE
Q 036740 231 ---KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPF 307 (424)
Q Consensus 231 ---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~ 307 (424)
..+++.|||+...... .. + .. +.+++.+|||.+++++||||||||....+.+++.++..+|+.++.+|
T Consensus 214 ~~~~~~v~~VGPl~~~~~~---~~-~----~~-~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~F 284 (446)
T PLN00414 214 RQCQRKVLLTGPMLPEPQN---KS-G----KP-LEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPF 284 (446)
T ss_pred HhcCCCeEEEcccCCCccc---cc-C----cc-cHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCe
Confidence 2469999999754211 00 0 00 22679999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEe-cccchhhhhccccceeeecccChhHHHHHHhcCCcEeeccccc
Q 036740 308 LWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT 386 (424)
Q Consensus 308 i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~-~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 386 (424)
+|++....+..+....+| ++|.+++.+++.|+ +|+||.+||+|+++++|||||||||++||+++|||||++|++.
T Consensus 285 lwvvr~~~~~~~~~~~lp----~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 360 (446)
T PLN00414 285 LIAVMPPKGSSTVQEALP----EGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLA 360 (446)
T ss_pred EEEEecCCCcccchhhCC----hhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCccc
Confidence 999976311111123689 99999998888887 9999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 387 DQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 387 DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
||+.||+++++.+|+|+.+...+++.++.++|++++++
T Consensus 361 dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~ 398 (446)
T PLN00414 361 DQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKS 398 (446)
T ss_pred chHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHH
Confidence 99999999963389999997532245899999999864
No 11
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-59 Score=448.07 Aligned_cols=388 Identities=22% Similarity=0.378 Sum_probs=288.4
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCC--ceEEEcC--CCCCCCCCCCC
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDG--LSFASFS--DGYDDGFNSKQ 76 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~g--i~~~~~~--~~~~~~~~~~~ 76 (424)
|+ +.++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+........+ +.+.++| ++++.+.++..
T Consensus 1 ~~-~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~ 79 (453)
T PLN02764 1 MG-GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVS 79 (453)
T ss_pred CC-CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccc
Confidence 45 3468999999999999999999999999999999999999887666542111113 7777777 67777655433
Q ss_pred cchHHHHHHHH---HHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhcc
Q 036740 77 NDRKHYMSEFK---RRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGY 153 (424)
Q Consensus 77 ~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 153 (424)
+........+. ....+.+.++++.+ ++||||+|+ ..|+..+|+++|||.+.|++++++.+++++. +.
T Consensus 80 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~-- 149 (453)
T PLN02764 80 EIPVTSADLLMSAMDLTRDQVEVVVRAV------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG-- 149 (453)
T ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHhC------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--
Confidence 33112222222 23334455555442 689999995 8899999999999999999999988888763 11
Q ss_pred CCcccCcCCccccCCCCCC----CCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHh
Q 036740 154 GDLIEGKVNDLIELPGLPP----LTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAI 229 (424)
Q Consensus 154 ~~~p~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 229 (424)
... ...+||+|. ++..+++.+... ............+.+.......+ +++++|||.+||+.+...+
T Consensus 150 ~~~-------~~~~pglp~~~v~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s--~~vlvNTf~eLE~~~~~~~ 219 (453)
T PLN02764 150 GEL-------GVPPPGYPSSKVLLRKQDAYTMKNL-EPTNTIDVGPNLLERVTTSLMNS--DVIAIRTAREIEGNFCDYI 219 (453)
T ss_pred ccC-------CCCCCCCCCCcccCcHhhCcchhhc-CCCccchhHHHHHHHHHHhhccC--CEEEEeccHHhhHHHHHHH
Confidence 011 112477763 444555553221 00111112223334443555666 8999999999999998888
Q ss_pred h---cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCC
Q 036740 230 D---KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHP 306 (424)
Q Consensus 230 ~---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~ 306 (424)
. +.+++.|||+..... .. .. +..++.+|||++++++||||||||+...+.+++.++..+|+.++.+
T Consensus 220 ~~~~~~~v~~VGPL~~~~~----~~------~~-~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~p 288 (453)
T PLN02764 220 EKHCRKKVLLTGPVFPEPD----KT------RE-LEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSP 288 (453)
T ss_pred HhhcCCcEEEeccCccCcc----cc------cc-chhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 5 246999999975410 00 00 2268999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEe-cccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccc
Q 036740 307 FLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 307 ~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~-~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 385 (424)
|+|+++...+.++....+| ++|++++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 289 flwv~r~~~~~~~~~~~lp----~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~ 364 (453)
T PLN02764 289 FLVAVKPPRGSSTIQEALP----EGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQL 364 (453)
T ss_pred eEEEEeCCCCCcchhhhCC----cchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 9999985311111133689 99999988777666 999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 386 TDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 386 ~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
.||+.||+++++.+|+|+.+...+++.++.++|+++|++
T Consensus 365 ~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~ 403 (453)
T PLN02764 365 GDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINS 403 (453)
T ss_pred cchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHH
Confidence 999999999964389999886431236899999999864
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.4e-59 Score=452.97 Aligned_cols=387 Identities=26% Similarity=0.428 Sum_probs=293.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEECccchhhhcCCCCCCCCceEEEcCC----CCCCCCCCCCcch
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLT-RIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSD----GYDDGFNSKQNDR 79 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~----~~~~~~~~~~~~~ 79 (424)
++.||+++|+|++||++|++.||+.|+ .+|++|||++++.+..++........+++++.+|. +++... .+.
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~- 79 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHV- 79 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccH-
Confidence 557999999999999999999999998 79999999999988765533211113689998884 443111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCccc-
Q 036740 80 KHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIE- 158 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~- 158 (424)
...+..+...+.+.++++++++ ..+|+|||+|.++.|+..+|+++|||++.|++++++.++.+.+.+........
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~----~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEM----HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhc----CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 2233334445556666666654 23789999999999999999999999999999999888776655421111110
Q ss_pred -CcCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh-------
Q 036740 159 -GKVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID------- 230 (424)
Q Consensus 159 -~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~------- 230 (424)
....+++.+||+|.++..+++..+.. .. ......+.+......++ +++++|||.+||+..+..+.
T Consensus 156 ~~~~~~~~~iPg~~~l~~~dlp~~~~~---~~--~~~~~~~~~~~~~~~~a--~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 156 HTVQRKPLAMPGCEPVRFEDTLDAYLV---PD--EPVYRDFVRHGLAYPKA--DGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred cccCCCCcccCCCCccCHHHhhHhhcC---CC--cHHHHHHHHHHHhcccC--CEEEEechHHHhHHHHHHHhhcccccc
Confidence 00112456899987877777754432 11 12334455555556677 89999999999999988774
Q ss_pred --cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEE
Q 036740 231 --KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFL 308 (424)
Q Consensus 231 --~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i 308 (424)
.++++.|||+...... . + ..+++.+||+++++++||||||||+..++.++++++..+|+.++++||
T Consensus 229 ~~~~~v~~VGPl~~~~~~--------~--~--~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~fl 296 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQS--------S--K--TDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFV 296 (481)
T ss_pred ccCCceEEecCccCCcCC--------C--c--chHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 1469999999754110 0 1 226799999999889999999999999999999999999999999999
Q ss_pred EEEecCCCC--------------Ccc-CCCCchhHHHHHHHHhCCCeEEe-cccchhhhhccccceeeecccChhHHHHH
Q 036740 309 WVSRESDNK--------------DKD-KDKGEDDVMMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWSSSLES 372 (424)
Q Consensus 309 ~~~~~~~~~--------------~~~-~~~lp~~~~~~~~~~~~~n~~v~-~~~pq~~lL~~~~~~~~I~HgG~gs~~ea 372 (424)
|+++..... .++ ...+| ++|.+++.++..++ +|+||.+||+|+++++|||||||||+.||
T Consensus 297 W~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp----~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Ea 372 (481)
T PLN02992 297 WVVRPPVDGSACSAYFSANGGETRDNTPEYLP----EGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLES 372 (481)
T ss_pred EEEeCCcccccccccccCcccccccchhhhCC----HHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHH
Confidence 999642000 000 12588 89999987665554 99999999999999999999999999999
Q ss_pred HhcCCcEeecccccchhHHHHHHH-hhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 373 LVYGVPVVAFPQWTDQGTNAKIIV-DFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 373 l~~GvP~v~~P~~~DQ~~na~rv~-~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
+++|||||++|+++||+.||++++ + +|+|+.++.. ++.++.++|+++|++
T Consensus 373 l~~GVP~l~~P~~~DQ~~na~~~~~~-~g~gv~~~~~-~~~~~~~~l~~av~~ 423 (481)
T PLN02992 373 VVGGVPMIAWPLFAEQNMNAALLSDE-LGIAVRSDDP-KEVISRSKIEALVRK 423 (481)
T ss_pred HHcCCCEEecCccchhHHHHHHHHHH-hCeeEEecCC-CCcccHHHHHHHHHH
Confidence 999999999999999999999995 6 9999999753 236899999998863
No 13
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.4e-59 Score=448.08 Aligned_cols=397 Identities=25% Similarity=0.430 Sum_probs=294.8
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCC--CEEEE--EECccchhhhc----CCCCCCCCceEEEcCCCCCCCCC--CC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIG--TRVTF--AIAISAYRRMA----NNPTPEDGLSFASFSDGYDDGFN--SK 75 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~i~----~~~~~~~gi~~~~~~~~~~~~~~--~~ 75 (424)
.-||+++|++++||++|++.||+.|+.+| +.||+ +++..+...+. .......+++|+.+|++.+.... ..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 46999999999999999999999999998 55655 44444332221 11111146999999976532221 11
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCC
Q 036740 76 QNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGD 155 (424)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
.+. ...+..+.......+.++++++... .+++|||+|.+..|+..+|+++|||.+.|++++++.++++++.+.....
T Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 83 HHH-ESLLLEILCFSNPSVHRTLFSLSRN--FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cCH-HHHHHHHHHhhhHHHHHHHHhcCCC--CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 222 3344444455666677777765321 2469999999999999999999999999999999999988876532222
Q ss_pred cccC--cCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh-c-
Q 036740 156 LIEG--KVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID-K- 231 (424)
Q Consensus 156 ~p~~--~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~- 231 (424)
.+.. .+...+.+||+|.++..+++.++.. .. ....+.+.+......++ +++++|||.+||+..+..+. .
T Consensus 160 ~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~---~~--~~~~~~~~~~~~~~~~~--~~vl~NTf~eLE~~~l~~l~~~~ 232 (451)
T PLN03004 160 TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLE---RD--DEVYDVFIMFGKQLSKS--SGIIINTFDALENRAIKAITEEL 232 (451)
T ss_pred ccccccccCCeecCCCCCCCChHHCchhhcC---Cc--hHHHHHHHHHHHhhccc--CeeeeeeHHHhHHHHHHHHHhcC
Confidence 1111 1112456899988888888876643 11 12334455555566667 89999999999999988885 1
Q ss_pred --CCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEE
Q 036740 232 --FNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLW 309 (424)
Q Consensus 232 --~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~ 309 (424)
.+++.|||++...... . + ... ...++.+||+++++++||||||||+...+.++++++..+|+.++++|||
T Consensus 233 ~~~~v~~vGPl~~~~~~~---~-~-~~~---~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIE---D-R-NDN---KAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CCCCEEEEeeeccCcccc---c-c-ccc---hhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 3699999997531110 0 0 011 1257999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCc---cCC-CCchhHHHHHHHHhCC-CeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeeccc
Q 036740 310 VSRESDNKDK---DKD-KGEDDVMMKYKEELNE-KGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQ 384 (424)
Q Consensus 310 ~~~~~~~~~~---~~~-~lp~~~~~~~~~~~~~-n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 384 (424)
+++.....++ +.. .+| ++|.++..+ |+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|+
T Consensus 305 ~~r~~~~~~~~~~~~~~~lp----~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~ 380 (451)
T PLN03004 305 VVRNPPELEKTELDLKSLLP----EGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPL 380 (451)
T ss_pred EEcCCccccccccchhhhCC----hHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccc
Confidence 9985311110 111 388 899988875 5566699999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 385 WTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 385 ~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
+.||+.||+++++.+|+|+.++..+++.++.++|+++|++
T Consensus 381 ~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~ 420 (451)
T PLN03004 381 YAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQE 420 (451)
T ss_pred cccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHH
Confidence 9999999999975379999997642246799999999864
No 14
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-58 Score=443.06 Aligned_cols=396 Identities=25% Similarity=0.426 Sum_probs=290.9
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEECccch-hh----hcCCCCCCCCceEEEcCCCCCCCC-CCCCc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIG--TRVTFAIAISAY-RR----MANNPTPEDGLSFASFSDGYDDGF-NSKQN 77 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~-~~----i~~~~~~~~gi~~~~~~~~~~~~~-~~~~~ 77 (424)
+.||+++|++++||++|++.||+.|+.+| ..|||++++.+. .. +.+......+++|+.+|+...... ....+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 46999999999999999999999999998 999999988754 22 221111113699999996432111 11223
Q ss_pred chHHHHHHHHHHH----HHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhcc
Q 036740 78 DRKHYMSEFKRRS----SEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGY 153 (424)
Q Consensus 78 ~~~~~~~~~~~~~----~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 153 (424)
. ..++..+.... .+.+.++++..... +.+++|||+|.+..|+..+|+++|||.+.|++++++.++.+++.+...
T Consensus 83 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 83 V-EAYVYDVIEKNIPLVRNIVMDILSSLALD-GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred H-HHHHHHHHHhcchhHHHHHHHHHHHhccC-CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 3 33333333333 23344444432111 123499999999999999999999999999999998888877664322
Q ss_pred CCc---ccCcCCccccCCCC-CCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHh
Q 036740 154 GDL---IEGKVNDLIELPGL-PPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAI 229 (424)
Q Consensus 154 ~~~---p~~~~~~~~~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 229 (424)
... +.......+.+||+ +.+...+++.++.. ... ...+.+......++ +++++||+++||++....+
T Consensus 161 ~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~---~~~----~~~~~~~~~~~~~~--~~vlvNtf~~LE~~~~~~~ 231 (468)
T PLN02207 161 SKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFV---EDG----YDAYVKLAILFTKA--NGILVNSSFDIEPYSVNHF 231 (468)
T ss_pred ccccccCcCCCCCeEECCCCCCCCChHHCcchhcC---Ccc----HHHHHHHHHhcccC--CEEEEEchHHHhHHHHHHH
Confidence 111 10000124568998 57888888876643 221 23334444456667 8999999999999887776
Q ss_pred h----cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCC
Q 036740 230 D----KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGH 305 (424)
Q Consensus 230 ~----~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~ 305 (424)
. .++++.|||+......+ ....+.. ..+++.+||+++++++||||||||....+.+++++++.+|+.+++
T Consensus 232 ~~~~~~p~v~~VGPl~~~~~~~---~~~~~~~---~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~ 305 (468)
T PLN02207 232 LDEQNYPSVYAVGPIFDLKAQP---HPEQDLA---RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQY 305 (468)
T ss_pred HhccCCCcEEEecCCcccccCC---CCccccc---hhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCC
Confidence 3 24699999998642111 0000111 226899999999989999999999999999999999999999999
Q ss_pred CEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccc
Q 036740 306 PFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 306 ~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 385 (424)
+|||+++.. ... ..+.+| ++|.++.++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 306 ~flW~~r~~-~~~-~~~~lp----~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~ 379 (468)
T PLN02207 306 RFLWSLRTE-EVT-NDDLLP----EGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY 379 (468)
T ss_pred cEEEEEeCC-Ccc-ccccCC----HHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcc
Confidence 999999853 210 112689 99999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhhcceeEeeec----CCCccchHHHHHhhhC
Q 036740 386 TDQGTNAKIIVDFCKTGVRVKAN----EEGIVESDEINRCLEL 424 (424)
Q Consensus 386 ~DQ~~na~rv~~~~G~G~~l~~~----~~~~~~~~~l~~ai~~ 424 (424)
+||+.||+++++.+|+|+.+... .++.++.++|.++|++
T Consensus 380 ~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~ 422 (468)
T PLN02207 380 AEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRC 422 (468)
T ss_pred ccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHH
Confidence 99999999876558999977421 1135699999999864
No 15
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.1e-58 Score=445.29 Aligned_cols=401 Identities=25% Similarity=0.462 Sum_probs=289.3
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCC----CCCceEEEcC-----CCCCCCCCCC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTP----EDGLSFASFS-----DGYDDGFNSK 75 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~----~~gi~~~~~~-----~~~~~~~~~~ 75 (424)
++.||+++|++++||++|++.||+.|+.||+.|||++++.+...+...... ...++|+.+| +++|.+.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 668999999999999999999999999999999999999887655442210 1248999887 6887765543
Q ss_pred Ccch-HHHHHHHHHH---HHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhh
Q 036740 76 QNDR-KHYMSEFKRR---SSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFY 151 (424)
Q Consensus 76 ~~~~-~~~~~~~~~~---~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 151 (424)
.+.. ..++..+... +.+.+.++++.. ..+++|||+|.++.|+..+|+++|||.+.|++++++.+.++++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQA----KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhc----CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 3221 2333333333 334444444432 2468999999999999999999999999999999988877654332
Q ss_pred ccCCcccCcCCccccCCCCCC---CCCCCCCCCcCCCCCCCcccccHHHHHHHHHHH-hccCCCeEEEcCchhhhHHHHH
Q 036740 152 GYGDLIEGKVNDLIELPGLPP---LTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAI-VEETDPRILVNTFDALEAETLK 227 (424)
Q Consensus 152 ~~~~~p~~~~~~~~~~P~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~ 227 (424)
.....+...+..++.+|++|. +...+++.++.+ .. ....+....... ..+ +++++|||.+||+.++.
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~---~~----~~~~~~~~~~~~~~~a--~~vlvNTf~eLE~~~l~ 233 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVS---LP----DLDDVRNKMREAESTA--FGVVVNSFNELEHGCAE 233 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChhhcC---cc----cHHHHHHHHHhhcccC--CEEEEecHHHhhHHHHH
Confidence 111111111122466888864 555566655433 11 112223222222 234 79999999999999988
Q ss_pred Hhh---cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcC
Q 036740 228 AID---KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSG 304 (424)
Q Consensus 228 ~~~---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~ 304 (424)
.+. ..+++.|||+........+....++.... +..++.+||+++++++||||||||+.....+++.+++.+|+.++
T Consensus 234 ~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~-~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~ 312 (491)
T PLN02534 234 AYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASI-DETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASK 312 (491)
T ss_pred HHHhhcCCcEEEECcccccccccccccccCCcccc-chHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 886 34799999997531110000000111110 22579999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCCC-Ccc-CCCCchhHHHHHHHHhC-CCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEee
Q 036740 305 HPFLWVSRESDNK-DKD-KDKGEDDVMMKYKEELN-EKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVA 381 (424)
Q Consensus 305 ~~~i~~~~~~~~~-~~~-~~~lp~~~~~~~~~~~~-~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 381 (424)
.+|||+++.. .. .+. ...+| ++|.++.. .++++.+|+||.+||+|++++||||||||||++||+++|||||+
T Consensus 313 ~~flW~~r~~-~~~~~~~~~~~p----~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 313 KPFIWVIKTG-EKHSELEEWLVK----ENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred CCEEEEEecC-ccccchhhhcCc----hhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEe
Confidence 9999999843 21 111 12468 88987754 56666699999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHhhhcceeEeeec-------CC--C-ccchHHHHHhhhC
Q 036740 382 FPQWTDQGTNAKIIVDFCKTGVRVKAN-------EE--G-IVESDEINRCLEL 424 (424)
Q Consensus 382 ~P~~~DQ~~na~rv~~~~G~G~~l~~~-------~~--~-~~~~~~l~~ai~~ 424 (424)
+|++.||+.||+++++.+|+|+.+... ++ + .+++++|+++|++
T Consensus 388 ~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~ 440 (491)
T PLN02534 388 WPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKT 440 (491)
T ss_pred ccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHH
Confidence 999999999999998779999988421 01 1 4899999999874
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.5e-58 Score=447.67 Aligned_cols=392 Identities=30% Similarity=0.546 Sum_probs=296.4
Q ss_pred CCCCCeEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchH
Q 036740 3 QQQQPHFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRK 80 (424)
Q Consensus 3 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 80 (424)
++.+.||+++|+|++||++|++.||++|+.| ||+|||++++.+...+.+... ..|++|+.+|++++.......+. .
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-~~gi~fv~lp~~~p~~~~~~~~~-~ 84 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-PDNIRFATIPNVIPSELVRAADF-P 84 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-CCCEEEEECCCCCCCccccccCH-H
Confidence 3478999999999999999999999999999 999999999998887776322 14899999998766554333344 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccC--Cccc
Q 036740 81 HYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYG--DLIE 158 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~--~~p~ 158 (424)
.++..+.+.+...++++++++. .++||||+|.++.|+..+|+++|||++.+++.++..++.+++...... ..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 4555555556666777776652 378999999999999999999999999999999988887766532111 1111
Q ss_pred Cc---CCccc-cCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh---c
Q 036740 159 GK---VNDLI-ELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID---K 231 (424)
Q Consensus 159 ~~---~~~~~-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---~ 231 (424)
.. ..+.+ .+|+++.+...+++.++.. . .....+.+.+......++ +.+++||+.+||+.....+. .
T Consensus 161 ~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~---~--~~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~l~~~~~ 233 (459)
T PLN02448 161 ELSESGEERVDYIPGLSSTRLSDLPPIFHG---N--SRRVLKRILEAFSWVPKA--QYLLFTSFYELEAQAIDALKSKFP 233 (459)
T ss_pred ccccccCCccccCCCCCCCChHHCchhhcC---C--chHHHHHHHHHHhhcccC--CEEEEccHHHhhHHHHHHHHhhcC
Confidence 10 01112 3788877777777765543 1 112233444555555566 89999999999999887775 3
Q ss_pred CCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEE
Q 036740 232 FNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVS 311 (424)
Q Consensus 232 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~ 311 (424)
.+++.|||+.......... .+.. ... .+.++.+|++.++++++|||||||+...+.+++++++.+|+.++++|||++
T Consensus 234 ~~~~~iGP~~~~~~~~~~~-~~~~-~~~-~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~ 310 (459)
T PLN02448 234 FPVYPIGPSIPYMELKDNS-SSSN-NED-NEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVA 310 (459)
T ss_pred CceEEecCcccccccCCCc-cccc-ccc-chhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 4799999997642111000 0000 001 125899999999889999999999998889999999999999999999987
Q ss_pred ecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccccchhHH
Q 036740 312 RESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTN 391 (424)
Q Consensus 312 ~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~n 391 (424)
... . .++.+..++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.|
T Consensus 311 ~~~-~-------------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~n 376 (459)
T PLN02448 311 RGE-A-------------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLN 376 (459)
T ss_pred cCc-h-------------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhh
Confidence 532 1 33443445789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeEeeecC--CCccchHHHHHhhhC
Q 036740 392 AKIIVDFCKTGVRVKANE--EGIVESDEINRCLEL 424 (424)
Q Consensus 392 a~rv~~~~G~G~~l~~~~--~~~~~~~~l~~ai~~ 424 (424)
|+++++.+|+|+.+.... ++.+++++|+++|++
T Consensus 377 a~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~ 411 (459)
T PLN02448 377 SKLIVEDWKIGWRVKREVGEETLVGREEIAELVKR 411 (459)
T ss_pred HHHHHHHhCceEEEecccccCCcCcHHHHHHHHHH
Confidence 999997469998886421 236799999999864
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.3e-58 Score=450.48 Aligned_cols=391 Identities=26% Similarity=0.422 Sum_probs=290.0
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEECccchhhh-------cCCCCC-CCCceEEEcCCCCCCCCCCC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIG--TRVTFAIAISAYRRM-------ANNPTP-EDGLSFASFSDGYDDGFNSK 75 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~i-------~~~~~~-~~gi~~~~~~~~~~~~~~~~ 75 (424)
++||+++|++++||++|++.||+.|+.+| ..|||++++.+...+ .+.... ..+++|+.+|++.+.... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-D 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc-c
Confidence 58999999999999999999999999998 889999998765421 111100 146999999876542211 1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhh
Q 036740 76 QNDRKHYMSEFKRRSSEALAELITASQNE----GGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFY 151 (424)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 151 (424)
... ..++. .+...+++.++++... ...+++|||+|.++.|+..+|+++|||++.|++++++.++++++.+.
T Consensus 81 ~~~-~~~~~----~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 81 PTF-QSYID----NQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred hHH-HHHHH----HHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 111 22233 3334444444444211 01234899999999999999999999999999999999999888754
Q ss_pred ccCC--cc--cCcCC-ccccCCCCC-CCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHH
Q 036740 152 GYGD--LI--EGKVN-DLIELPGLP-PLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAET 225 (424)
Q Consensus 152 ~~~~--~p--~~~~~-~~~~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 225 (424)
.... .+ ...+. +++.+||++ +++..+++.++.. . .+...+.+......++ +++++||+.+||+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~---~----~~~~~~~~~~~~~~~~--~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS---K----EWLPLFLAQARRFREM--KGILVNTVAELEPQA 226 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC---H----HHHHHHHHHHHhcccC--CEEEEechHHHhHHH
Confidence 3211 11 10111 245689984 6777777765532 1 2234455555666677 899999999999998
Q ss_pred HHHhh-----cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHH
Q 036740 226 LKAID-----KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGL 300 (424)
Q Consensus 226 ~~~~~-----~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l 300 (424)
...+. .++++.|||++...... . . . ... .+.++.+|++++++++||||||||+...+.+++.+++.+|
T Consensus 227 ~~~l~~~~~~~~~v~~vGpl~~~~~~~---~-~-~-~~~-~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l 299 (481)
T PLN02554 227 LKFFSGSSGDLPPVYPVGPVLHLENSG---D-D-S-KDE-KQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIAL 299 (481)
T ss_pred HHHHHhcccCCCCEEEeCCCccccccc---c-c-c-ccc-cchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHH
Confidence 87774 14699999995321100 0 0 0 011 3378999999998889999999999988999999999999
Q ss_pred HhcCCCEEEEEecCCCC----------CccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHH
Q 036740 301 LDSGHPFLWVSRESDNK----------DKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSL 370 (424)
Q Consensus 301 ~~~~~~~i~~~~~~~~~----------~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~ 370 (424)
+.++++|||+++.. .. .+....+| ++|.++..+|+++++|+||.+||+|+++++|||||||||+.
T Consensus 300 ~~~~~~flW~~~~~-~~~~~~~~~~~~~~~~~~lp----~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~ 374 (481)
T PLN02554 300 ERSGHRFLWSLRRA-SPNIMKEPPGEFTNLEEILP----EGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSIL 374 (481)
T ss_pred HHcCCCeEEEEcCC-cccccccccccccchhhhCC----hHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHH
Confidence 99999999999752 11 00012368 89998999999999999999999999999999999999999
Q ss_pred HHHhcCCcEeecccccchhHHH-HHHHhhhcceeEeeec--------CCCccchHHHHHhhhC
Q 036740 371 ESLVYGVPVVAFPQWTDQGTNA-KIIVDFCKTGVRVKAN--------EEGIVESDEINRCLEL 424 (424)
Q Consensus 371 eal~~GvP~v~~P~~~DQ~~na-~rv~~~~G~G~~l~~~--------~~~~~~~~~l~~ai~~ 424 (424)
||+++|||||++|+++||+.|| .++++ +|+|+.+.+. +++.+++++|.++|++
T Consensus 375 Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~ 436 (481)
T PLN02554 375 ESLWFGVPMAAWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRC 436 (481)
T ss_pred HHHHcCCCEEecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHH
Confidence 9999999999999999999999 45776 9999999741 1236899999999863
No 18
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1e-57 Score=437.34 Aligned_cols=391 Identities=24% Similarity=0.376 Sum_probs=290.4
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEECccchhhhc--CCCC---CCCCceEEEcCCCCCCCCCCC-Ccc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRI-GTRVTFAIAISAYRRMA--NNPT---PEDGLSFASFSDGYDDGFNSK-QND 78 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~--~~~~---~~~gi~~~~~~~~~~~~~~~~-~~~ 78 (424)
+.||+++|+|++||++|++.||+.|+.+ |..|||+++......+. .... ...+++++.+|.....+.... .+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 4599999999999999999999999987 99999999876554431 1010 112699999985332211011 133
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCC-cEEEechhhHHHHHHHhhhhccCCcc
Q 036740 79 RKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLP-SALLWLQPALVFDVYYYYFYGYGDLI 157 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~p 157 (424)
...+......+.+.++++++++. .+++|||+|.+..|+..+|+++||| .+.+++++++.+..+++.+.......
T Consensus 83 -~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 83 -FTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred -HHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 32333344455666777776652 3689999999999999999999999 47777777777766666542211111
Q ss_pred cC--cCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh-c---
Q 036740 158 EG--KVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID-K--- 231 (424)
Q Consensus 158 ~~--~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~--- 231 (424)
.. ...+++.+||+|.+...+++..+.. .. ......+.+......++ +++++|||.+||+.....+. .
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~---~~--~~~~~~~~~~~~~~~~a--~gvlvNTf~eLE~~~~~~l~~~~~~ 230 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLD---RS--DQQYKECVRSGLEVPMS--DGVLVNTWEELQGNTLAALREDMEL 230 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcC---CC--cHHHHHHHHHHHhcccC--CEEEEechHHHhHHHHHHHHhhccc
Confidence 10 1123466899988888888875543 11 11123333444456677 99999999999999988885 2
Q ss_pred -----CCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCC
Q 036740 232 -----FNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHP 306 (424)
Q Consensus 232 -----~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~ 306 (424)
++++.|||+..... . .+ +..++.+||+++++++||||||||+...+.+++.++..+|+.++++
T Consensus 231 ~~~~~~~v~~VGPl~~~~~-~---------~~--~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~ 298 (470)
T PLN03015 231 NRVMKVPVYPIGPIVRTNV-H---------VE--KRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQR 298 (470)
T ss_pred ccccCCceEEecCCCCCcc-c---------cc--chHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCc
Confidence 46999999974311 0 01 2258999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCC------CC-c-cCCCCchhHHHHHHHHhCCCeEEe-cccchhhhhccccceeeecccChhHHHHHHhcCC
Q 036740 307 FLWVSRESDN------KD-K-DKDKGEDDVMMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGV 377 (424)
Q Consensus 307 ~i~~~~~~~~------~~-~-~~~~lp~~~~~~~~~~~~~n~~v~-~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 377 (424)
|||+++.... .+ + ....+| ++|.+++.+++.++ +|+||.+||+|+++++|||||||||++||+++||
T Consensus 299 FlWv~r~~~~~~~~~~~~~~~~~~~lp----~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~Gv 374 (470)
T PLN03015 299 FVWVLRRPASYLGASSSDDDQVSASLP----EGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGV 374 (470)
T ss_pred EEEEEecCccccccccccccchhhcCC----hHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCC
Confidence 9999974200 00 1 122588 99999988887665 9999999999999999999999999999999999
Q ss_pred cEeecccccchhHHHHHHHhhhcceeEeee-cCCCccchHHHHHhhhC
Q 036740 378 PVVAFPQWTDQGTNAKIIVDFCKTGVRVKA-NEEGIVESDEINRCLEL 424 (424)
Q Consensus 378 P~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~~~~~~~~~l~~ai~~ 424 (424)
|||++|++.||+.||+++++.+|+|+.+.. .+++.+++++|+++|++
T Consensus 375 P~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~ 422 (470)
T PLN03015 375 PIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRK 422 (470)
T ss_pred CEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHH
Confidence 999999999999999999545999999952 11246899999999863
No 19
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-57 Score=442.59 Aligned_cols=391 Identities=26% Similarity=0.415 Sum_probs=292.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCC----CEEEEEECccchh----hhcCCC----CCCCCceEEEcCCCCCCCCC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIG----TRVTFAIAISAYR----RMANNP----TPEDGLSFASFSDGYDDGFN 73 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~i~~~~----~~~~gi~~~~~~~~~~~~~~ 73 (424)
+.||+++|++++||++|++.||+.|+.|| +.|||++++.+.. .+.... ....+++|..+|++.+...
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~- 81 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD- 81 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc-
Confidence 56999999999999999999999999997 7999999875421 222211 0112599999997642211
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhcc
Q 036740 74 SKQNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGY 153 (424)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 153 (424)
..+. ..++..+...+.+.++++++.+ ..+++|||+|.+..|+..+|+++|||.+.|++++++.++++++.+...
T Consensus 82 -~e~~-~~~~~~~~~~~~~~l~~~L~~l----~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 -AAGV-EEFISRYIQLHAPHVRAAIAGL----SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred -cccH-HHHHHHHHHhhhHHHHHHHHhc----CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1123 3444445555566666666554 125699999999999999999999999999999999999888765322
Q ss_pred CCccc--CcCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh-
Q 036740 154 GDLIE--GKVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID- 230 (424)
Q Consensus 154 ~~~p~--~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~- 230 (424)
...+. ....+++.+||+|.++..+++.++.. .. ......+........++ +++++|||.+||+.....+.
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~---~~--~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMD---KK--SPNYAWFVYHGRRFMEA--AGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcC---CC--cHHHHHHHHHHHhhhhc--CEEEEechHHhhHHHHHHHHh
Confidence 22111 00012356899988888888876543 11 11123334444556677 89999999999999988885
Q ss_pred c--------CCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHh
Q 036740 231 K--------FNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD 302 (424)
Q Consensus 231 ~--------~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~ 302 (424)
. ++++.|||+......+ .... ...++.+||+++++++||||||||+...+.+++.+++.+|+.
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~~-------~~~~--~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~ 299 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFTP-------PAEQ--PPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLER 299 (480)
T ss_pred ccccccCCCCceEEeCCCccccccC-------CCcc--chHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 1 3699999997431100 0011 226899999999999999999999998999999999999999
Q ss_pred cCCCEEEEEecCCCC-------C-ccCCCCchhHHHHHHHHhCCCeEEe-cccchhhhhccccceeeecccChhHHHHHH
Q 036740 303 SGHPFLWVSRESDNK-------D-KDKDKGEDDVMMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWSSSLESL 373 (424)
Q Consensus 303 ~~~~~i~~~~~~~~~-------~-~~~~~lp~~~~~~~~~~~~~n~~v~-~~~pq~~lL~~~~~~~~I~HgG~gs~~eal 373 (424)
++++|||+++.. .. + +....+| ++|.++..++..++ +|+||.+||+|+++++|||||||||++||+
T Consensus 300 s~~~flWv~~~~-~~~~~~~~~~~~~~~~lp----~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai 374 (480)
T PLN00164 300 SGHRFLWVLRGP-PAAGSRHPTDADLDELLP----EGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESL 374 (480)
T ss_pred cCCCEEEEEcCC-cccccccccccchhhhCC----hHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHH
Confidence 999999999853 11 0 0112488 89988887777766 999999999999999999999999999999
Q ss_pred hcCCcEeecccccchhHHHHHHHhhhcceeEeeecC--CCccchHHHHHhhhC
Q 036740 374 VYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE--EGIVESDEINRCLEL 424 (424)
Q Consensus 374 ~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~--~~~~~~~~l~~ai~~ 424 (424)
++|||||++|+++||+.||+++++.+|+|+.+...+ ++.+++++|.++|++
T Consensus 375 ~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~ 427 (480)
T PLN00164 375 WHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRS 427 (480)
T ss_pred HcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHH
Confidence 999999999999999999988754389999996431 135799999999863
No 20
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.3e-57 Score=442.98 Aligned_cols=399 Identities=25% Similarity=0.418 Sum_probs=282.3
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCC----CC----CceEEEcC---CCCCCCCC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTP----ED----GLSFASFS---DGYDDGFN 73 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~----~~----gi~~~~~~---~~~~~~~~ 73 (424)
+++||+++|+|++||++|++.||+.|+.||++|||++++.+...+++.... .. .+.+.++| ++++.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 567999999999999999999999999999999999999888766543210 01 34455666 46666543
Q ss_pred CCC-------cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHH
Q 036740 74 SKQ-------NDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVY 146 (424)
Q Consensus 74 ~~~-------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 146 (424)
... .....++..+... ...+.+.++++... .++||||+|.++.|+..+|+++|||.+.|++++++.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFS-TKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred cccccccccccchHHHHHHHHHH-HHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 321 1112344444422 33344444444332 3799999999999999999999999999999998877766
Q ss_pred Hhhhhcc--CCcccCcCCccccCCCCCC---CCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhh
Q 036740 147 YYYFYGY--GDLIEGKVNDLIELPGLPP---LTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDAL 221 (424)
Q Consensus 147 ~~~~~~~--~~~p~~~~~~~~~~P~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 221 (424)
+...... ...+. ....+.+|++|. +...+++.. .....+.+.+........++ +++++||+.+|
T Consensus 161 ~~~~~~~~~~~~~~--~~~~~~~pg~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~vl~Nt~~~l 229 (482)
T PLN03007 161 YCIRVHKPQKKVAS--SSEPFVIPDLPGDIVITEEQINDA-------DEESPMGKFMKEVRESEVKS--FGVLVNSFYEL 229 (482)
T ss_pred HHHHhcccccccCC--CCceeeCCCCCCccccCHHhcCCC-------CCchhHHHHHHHHHhhcccC--CEEEEECHHHH
Confidence 6443211 11111 011344788763 222222211 11122334444554555666 89999999999
Q ss_pred hHHHHHHhh---cCCeEEeccccCCCCCCCCcc-cCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHH
Q 036740 222 EAETLKAID---KFNMIAIGPLVASALLDGKEQ-YGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIA 297 (424)
Q Consensus 222 ~~~~~~~~~---~~~~~~vGpl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~ 297 (424)
|.+....+. ..++++|||+........+.. .+..... ++.++.+|++++++++||||||||+...+.+++.+++
T Consensus 230 e~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~--~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~ 307 (482)
T PLN03007 230 ESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANI--DEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIA 307 (482)
T ss_pred HHHHHHHHHhccCCCEEEEccccccccccccccccCCcccc--chhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHH
Confidence 998777775 246999999865311100000 0101111 2378999999999999999999999988889999999
Q ss_pred HHHHhcCCCEEEEEecCCCCC-ccCCCCchhHHHHHHHHhC-CCeEEecccchhhhhccccceeeecccChhHHHHHHhc
Q 036740 298 RGLLDSGHPFLWVSRESDNKD-KDKDKGEDDVMMKYKEELN-EKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVY 375 (424)
Q Consensus 298 ~~l~~~~~~~i~~~~~~~~~~-~~~~~lp~~~~~~~~~~~~-~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~ 375 (424)
.+|+.++++|||+++.. ... ++...+| ++|.++.. .|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 308 ~~l~~~~~~flw~~~~~-~~~~~~~~~lp----~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~ 382 (482)
T PLN03007 308 AGLEGSGQNFIWVVRKN-ENQGEKEEWLP----EGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAA 382 (482)
T ss_pred HHHHHCCCCEEEEEecC-CcccchhhcCC----HHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHc
Confidence 99999999999999864 221 1223588 88887764 56777799999999999999999999999999999999
Q ss_pred CCcEeecccccchhHHHHHHHhhhcceeEeeec-----CCCccchHHHHHhhhC
Q 036740 376 GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN-----EEGIVESDEINRCLEL 424 (424)
Q Consensus 376 GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~-----~~~~~~~~~l~~ai~~ 424 (424)
|||||++|+++||+.||+++++.+++|+.+... +.+.+++++|+++|++
T Consensus 383 GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~ 436 (482)
T PLN03007 383 GLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVRE 436 (482)
T ss_pred CCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHH
Confidence 999999999999999999987546666665311 1236899999999863
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-56 Score=437.86 Aligned_cols=397 Identities=24% Similarity=0.430 Sum_probs=288.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCC---EEEEEECccch-----hhhcCCCCCCCCceEEEcCCCCCC-CCCC-C
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGT---RVTFAIAISAY-----RRMANNPTPEDGLSFASFSDGYDD-GFNS-K 75 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~-----~~i~~~~~~~~gi~~~~~~~~~~~-~~~~-~ 75 (424)
+.||+++|+|++||++|++.||+.|+.+|. .||++++.... ..+........+|+|+.+|++... .... .
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~ 82 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFV 82 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccccc
Confidence 459999999999999999999999999993 56666654321 122221111136999999865421 1111 1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcC---CC-CeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhh
Q 036740 76 QNDRKHYMSEFKRRSSEALAELITASQNEG---GQ-PFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFY 151 (424)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~-~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 151 (424)
... ...+..+...+...+++.++++.... +. +++|||+|.++.|+..+|+++|||.+.|++++++.++.+++.+.
T Consensus 83 ~~~-~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 83 KAS-EAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 112 22333444455556666666653210 11 45999999999999999999999999999999999888876543
Q ss_pred ccCCcc----cCcCCccccCCCCC-CCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHH
Q 036740 152 GYGDLI----EGKVNDLIELPGLP-PLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETL 226 (424)
Q Consensus 152 ~~~~~p----~~~~~~~~~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 226 (424)
.....+ .....+++.+||++ .++..+++.++.. .. ..+.+.+......++ +++++|||.+||+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~---~~----~~~~~~~~~~~~~~a--~~vlvNTf~eLE~~~~ 232 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFM---KE----SYEAWVEIAERFPEA--KGILVNSFTELEPNAF 232 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhC---cc----hHHHHHHHHHhhccc--CEeeeccHHHHHHHHH
Confidence 221111 00001245689984 5677777654432 11 123444555566677 8999999999999988
Q ss_pred HHhh----c-CCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHH
Q 036740 227 KAID----K-FNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLL 301 (424)
Q Consensus 227 ~~~~----~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~ 301 (424)
.++. . +++++|||+....... . ...... +..++.+||+.+++++||||||||+...+.+++.+++.+|+
T Consensus 233 ~~l~~~~~~~p~v~~vGpl~~~~~~~---~--~~~~~~-~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~ 306 (475)
T PLN02167 233 DYFSRLPENYPPVYPVGPILSLKDRT---S--PNLDSS-DRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALE 306 (475)
T ss_pred HHHHhhcccCCeeEEecccccccccc---C--CCCCcc-hhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 8774 1 4699999997642100 0 011111 22689999999998999999999999889999999999999
Q ss_pred hcCCCEEEEEecCCCCC--ccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcE
Q 036740 302 DSGHPFLWVSRESDNKD--KDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPV 379 (424)
Q Consensus 302 ~~~~~~i~~~~~~~~~~--~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~ 379 (424)
.++++|||+++.. ... +....+| ++|.+++.+++++++|+||.+||+|+++++|||||||||++||+++||||
T Consensus 307 ~~~~~flw~~~~~-~~~~~~~~~~lp----~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~ 381 (475)
T PLN02167 307 LVGCRFLWSIRTN-PAEYASPYEPLP----EGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPI 381 (475)
T ss_pred hCCCcEEEEEecC-cccccchhhhCC----hHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCE
Confidence 9999999999753 211 1123588 89998988899999999999999999999999999999999999999999
Q ss_pred eecccccchhHHHHH-HHhhhcceeEeeec---C-CCccchHHHHHhhhC
Q 036740 380 VAFPQWTDQGTNAKI-IVDFCKTGVRVKAN---E-EGIVESDEINRCLEL 424 (424)
Q Consensus 380 v~~P~~~DQ~~na~r-v~~~~G~G~~l~~~---~-~~~~~~~~l~~ai~~ 424 (424)
|++|+++||+.||++ +++ +|+|+.+... + ++.+++++|+++|++
T Consensus 382 l~~P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~ 430 (475)
T PLN02167 382 ATWPMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRS 430 (475)
T ss_pred EeccccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHH
Confidence 999999999999976 666 9999998643 1 135799999998863
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.7e-46 Score=363.34 Aligned_cols=366 Identities=17% Similarity=0.169 Sum_probs=252.8
Q ss_pred CCeEEEE-cCCCccChHHHHHHHHHHHhCCCEEEEEECccch--hhhcCCCCCCCCceEEEcCCCCCC------CC--CC
Q 036740 6 QPHFLLL-TFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY--RRMANNPTPEDGLSFASFSDGYDD------GF--NS 74 (424)
Q Consensus 6 ~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~i~~~~~~~~gi~~~~~~~~~~~------~~--~~ 74 (424)
..||+++ |.++.+|+.-+-.|+++|++|||+||++++.... +.... .+++.+.++...+. .. ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLC-----GNITEIDASLSVEYFKKLVKSSAVFR 94 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCC-----CCEEEEEcCCChHHHHHHHhhhhHHH
Confidence 4567655 8899999999999999999999999999875421 11112 56776666411110 00 00
Q ss_pred C----Ccch---HHHHHHHHHHHHHHH--HHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHc-CCCcEEEechhhHHHH
Q 036740 75 K----QNDR---KHYMSEFKRRSSEAL--AELITASQNEGGQPFTCLVYPQLLPWAAEVARAY-HLPSALLWLQPALVFD 144 (424)
Q Consensus 75 ~----~~~~---~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~~ 144 (424)
. .+.. ......+...+...+ .++.+.+... ..++|+||+|.+..|+..+|+++ ++|.|.++++......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~ 173 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANK-NNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAEN 173 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcC-CCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhH
Confidence 0 0110 001111222233332 1223333311 24899999999889999999999 9998888775443221
Q ss_pred HHHhhhhccCCcccCcCCccccCCCCCCCCCCCCCCCcCCCCCCCcccc-----------cHHHHHHHH--------HHH
Q 036740 145 VYYYYFYGYGDLIEGKVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSF-----------VLPSFKEQM--------EAI 205 (424)
Q Consensus 145 ~~~~~~~~~~~~p~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--------~~~ 205 (424)
. .. ..+.|.+ +.++|.+ .....+.|++++|..|...... ..+...+.+ +..
T Consensus 174 ~---~~--~gg~p~~----~syvP~~-~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~ 243 (507)
T PHA03392 174 F---ET--MGAVSRH----PVYYPNL-WRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELR 243 (507)
T ss_pred H---Hh--hccCCCC----CeeeCCc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHH
Confidence 1 11 1124433 5677876 5677788999998766311100 000111111 111
Q ss_pred hccCCCeEEEcCchhhhHHHHHHhhcCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEeccc
Q 036740 206 VEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTI 285 (424)
Q Consensus 206 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~ 285 (424)
.+. +..++|+.+.++.+. +. .+++++|||+..+.... ++ .++++.+|+++.+ +++|||||||+
T Consensus 244 ~~~--~l~lvns~~~~d~~r-p~--~p~v~~vGgi~~~~~~~----------~~-l~~~l~~fl~~~~-~g~V~vS~GS~ 306 (507)
T PHA03392 244 NRV--QLLFVNVHPVFDNNR-PV--PPSVQYLGGLHLHKKPP----------QP-LDDYLEEFLNNST-NGVVYVSFGSS 306 (507)
T ss_pred hCC--cEEEEecCccccCCC-CC--CCCeeeecccccCCCCC----------CC-CCHHHHHHHhcCC-CcEEEEECCCC
Confidence 222 688999999999764 33 34799999997642110 11 4489999998764 46999999998
Q ss_pred cc---CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeec
Q 036740 286 CV---LEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVT 362 (424)
Q Consensus 286 ~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~ 362 (424)
.. .+.+.++.++++++..+.+|||+.... .. . ...++|+++.+|+||.+||+|+.+++|||
T Consensus 307 ~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~-~~------------~---~~~p~Nv~i~~w~Pq~~lL~hp~v~~fIt 370 (507)
T PHA03392 307 IDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE-VE------------A---INLPANVLTQKWFPQRAVLKHKNVKAFVT 370 (507)
T ss_pred CcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC-cC------------c---ccCCCceEEecCCCHHHHhcCCCCCEEEe
Confidence 63 467889999999999999999998643 11 0 02358999999999999999999999999
Q ss_pred ccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 363 HCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 363 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
|||+||+.||+++|||||++|+++||+.||+|+++ +|+|+.+++. ++|.++|.++|++
T Consensus 371 HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~---~~t~~~l~~ai~~ 428 (507)
T PHA03392 371 QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTV---TVSAAQLVLAIVD 428 (507)
T ss_pred cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEeccC---CcCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 9999999987 7999999998863
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=8.6e-48 Score=383.44 Aligned_cols=360 Identities=21% Similarity=0.290 Sum_probs=213.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCC--CcchHHH---
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSK--QNDRKHY--- 82 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~--~~~~~~~--- 82 (424)
||+++|. ++||+.++..|+++|++|||+||++++.... .+.... ..++++..++...+...... .+.....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSK--PSNIRFETYPDPYPEEEFEEIFPEFISKFFSE 77 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T--------S-CCEEEE-----TT------TTHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccccc--ccceeeEEEcCCcchHHHhhhhHHHHHHHhhh
Confidence 6888885 8899999999999999999999999975432 222101 15677777765554332221 1100000
Q ss_pred ------HHHHHHH-------HHHHH------HHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHH
Q 036740 83 ------MSEFKRR-------SSEAL------AELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVF 143 (424)
Q Consensus 83 ------~~~~~~~-------~~~~~------~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 143 (424)
....... ....+ ..+++.+++. ++|++|+|.+..|+..+|+.+++|.+.+.+..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~---~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~- 153 (500)
T PF00201_consen 78 SSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE---KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY- 153 (500)
T ss_dssp HCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH---HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS-
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh---ccccceEeeccchhHHHHHHhcCCeEEEecccccc-
Confidence 0111111 11111 1122334444 89999999998999999999999998754332110
Q ss_pred HHHHhhhhccCCcccCcCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHH-------------------HH
Q 036740 144 DVYYYYFYGYGDLIEGKVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQM-------------------EA 204 (424)
Q Consensus 144 ~~~~~~~~~~~~~p~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 204 (424)
.......+.|.. +.++|.. .....+.+++++|..|.... .....+.+.. +.
T Consensus 154 ----~~~~~~~g~p~~----psyvP~~-~s~~~~~msf~~Ri~N~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (500)
T PF00201_consen 154 ----DLSSFSGGVPSP----PSYVPSM-FSDFSDRMSFWQRIKNFLFY-LYFRFIFRYFFSPQDKLYKKYFGFPFSFREL 223 (500)
T ss_dssp ----CCTCCTSCCCTS----TTSTTCB-CCCSGTTSSSST--TTSHHH-HHHHHHHHHGGGS-TTS-EEESS-GGGCHHH
T ss_pred ----hhhhhccCCCCC----hHHhccc-cccCCCccchhhhhhhhhhh-hhhccccccchhhHHHHHhhhcccccccHHH
Confidence 000001122222 4556665 34556788888887554221 1111111111 01
Q ss_pred HhccCCCeEEEcCchhhhHHHHHHhhcCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecc
Q 036740 205 IVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGT 284 (424)
Q Consensus 205 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS 284 (424)
..+. ...+.|+.+.++.+.+ . .+++.++|++......+ .+.++.+|++...++++|||||||
T Consensus 224 ~~~~--~l~l~ns~~~ld~prp-~--~p~v~~vGgl~~~~~~~-------------l~~~~~~~~~~~~~~~vv~vsfGs 285 (500)
T PF00201_consen 224 LSNA--SLVLINSHPSLDFPRP-L--LPNVVEVGGLHIKPAKP-------------LPEELWNFLDSSGKKGVVYVSFGS 285 (500)
T ss_dssp HHHH--HHCCSSTEEE----HH-H--HCTSTTGCGC-S----T-------------CHHHHHHHTSTTTTTEEEEEE-TS
T ss_pred HHHH--HHHhhhccccCcCCcc-h--hhcccccCccccccccc-------------cccccchhhhccCCCCEEEEecCc
Confidence 1112 3344555555554432 2 23677888876553322 568999999986677899999999
Q ss_pred cccCCHH-HHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecc
Q 036740 285 ICVLEKR-QVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTH 363 (424)
Q Consensus 285 ~~~~~~~-~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~H 363 (424)
+....++ .++.++++++.++.+|||++.+. ... .+++|+++.+|+||.+||+|+++++||||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-~~~----------------~l~~n~~~~~W~PQ~~lL~hp~v~~fitH 348 (500)
T PF00201_consen 286 IVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-PPE----------------NLPKNVLIVKWLPQNDLLAHPRVKLFITH 348 (500)
T ss_dssp SSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-HGC----------------HHHTTEEEESS--HHHHHTSTTEEEEEES
T ss_pred ccchhHHHHHHHHHHHHhhCCCccccccccc-ccc----------------cccceEEEeccccchhhhhcccceeeeec
Confidence 9854444 48889999999999999999653 211 34589999999999999999999999999
Q ss_pred cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 364 CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 364 gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
||+||+.||+++|||||++|+++||+.||+++++ .|+|+.+++. .+|.++|.++|++
T Consensus 349 gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~---~~~~~~l~~ai~~ 405 (500)
T PF00201_consen 349 GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKN---DLTEEELRAAIRE 405 (500)
T ss_dssp --HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGG---C-SHHHHHHHHHH
T ss_pred cccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEec---CCcHHHHHHHHHH
Confidence 9999999999999999999999999999999998 9999999987 7999999999863
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=7.2e-42 Score=330.44 Aligned_cols=340 Identities=19% Similarity=0.244 Sum_probs=233.9
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCC----CcchHHHHHHHH
Q 036740 12 LTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSK----QNDRKHYMSEFK 87 (424)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 87 (424)
+.+|++||++|++.||++|++|||+|+|++++.+.+.++. .|++|.+++.......... .+. ...+..+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 74 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPENTEEEP-IDIIEKLL 74 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCccccccccccCcch-HHHHHHHH
Confidence 3679999999999999999999999999999999999999 9999999986543311110 223 44455555
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCCccccC
Q 036740 88 RRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVNDLIEL 167 (424)
Q Consensus 88 ~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 167 (424)
......+..+.+.+... +||+||+|.++.++..+|+.+|||+|.+++...... ..+... .|. .
T Consensus 75 ~~~~~~~~~l~~~~~~~---~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~--~~~--------~ 137 (392)
T TIGR01426 75 DEAEDVLPQLEEAYKGD---RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMV--SPA--------G 137 (392)
T ss_pred HHHHHHHHHHHHHhcCC---CCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccc--ccc--------c
Confidence 55555555555555443 899999999888999999999999998854421100 000000 000 0
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHH----------hccCCCeEEEcCchhhhHHHHHHhhcCCeEEe
Q 036740 168 PGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAI----------VEETDPRILVNTFDALEAETLKAIDKFNMIAI 237 (424)
Q Consensus 168 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v 237 (424)
+.+ +..... ..+ . .....+.+.+.+... .....+..+..+.+.|+++...+ ..+++++
T Consensus 138 ~~~--~~~~~~---~~~----~-~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~~~~~ 205 (392)
T TIGR01426 138 EGS--AEEGAI---AER----G-LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETF--DDSFTFV 205 (392)
T ss_pred hhh--hhhhcc---ccc----h-hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCcccc--CCCeEEE
Confidence 000 000000 000 0 011111111111110 00000235566666666533222 3469999
Q ss_pred ccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 036740 238 GPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNK 317 (424)
Q Consensus 238 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~ 317 (424)
||+.... .+...|....+++++|||||||+.......+..+++++.+.+.+++|..+.. ..
T Consensus 206 Gp~~~~~------------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~-~~ 266 (392)
T TIGR01426 206 GPCIGDR------------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG-VD 266 (392)
T ss_pred CCCCCCc------------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC-CC
Confidence 9987651 1122377666778899999999876666688889999999999999887544 21
Q ss_pred CccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHh
Q 036740 318 DKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVD 397 (424)
Q Consensus 318 ~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~ 397 (424)
. ..+ +..++|+.+.+|+||.++|+++++ +|||||+||++||+++|||+|++|...||+.||+++++
T Consensus 267 ~-----------~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~ 332 (392)
T TIGR01426 267 P-----------ADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE 332 (392)
T ss_pred h-----------hHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH
Confidence 1 111 134589999999999999999998 99999999999999999999999999999999999998
Q ss_pred hhcceeEeeecCCCccchHHHHHhhh
Q 036740 398 FCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 398 ~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+|+|..+... .++.++|.++|+
T Consensus 333 -~g~g~~l~~~---~~~~~~l~~ai~ 354 (392)
T TIGR01426 333 -LGLGRHLPPE---EVTAEKLREAVL 354 (392)
T ss_pred -CCCEEEeccc---cCCHHHHHHHHH
Confidence 9999999865 689999998875
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.9e-42 Score=334.68 Aligned_cols=338 Identities=18% Similarity=0.188 Sum_probs=228.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCC-----------
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSK----------- 75 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~----------- 75 (424)
|||+|++.|+.||++|++.||++|++|||+|+|++++.+...++. .|++|+++++..+......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDELLASPERNAGLLLLGP 75 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHHHhhhhhcccccccch
Confidence 799999999999999999999999999999999999999999998 9999999986432211110
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCC
Q 036740 76 QNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGD 155 (424)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
... ......+.......++++++.+.+. +||+||+|.+.+++..+|+++|||++.+++++..... .
T Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----------~ 141 (401)
T cd03784 76 GLL-LGALRLLRREAEAMLDDLVAAARDW---GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS----------A 141 (401)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhccc---CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc----------c
Confidence 111 2333444555555666666655444 9999999998889999999999999998776432100 0
Q ss_pred cccCcCCccccCCCCCCCCCCCCCCCcCCCCCCCccc-----ccHHHHHHHHHHHhcc----C-------CCeEEEcCch
Q 036740 156 LIEGKVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYS-----FVLPSFKEQMEAIVEE----T-------DPRILVNTFD 219 (424)
Q Consensus 156 ~p~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~-------~~~~l~~~~~ 219 (424)
. .| +. .... ...+. .....+.......++. + .+..+....+
T Consensus 142 ~----------~~---~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 198 (401)
T cd03784 142 F----------PP---PL------GRAN----LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSP 198 (401)
T ss_pred C----------CC---cc------chHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCc
Confidence 0 00 00 0000 00000 0011111111111111 0 0111111111
Q ss_pred hhhHHHHHHhhcCCeEEec-cccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCC-HHHHHHHH
Q 036740 220 ALEAETLKAIDKFNMIAIG-PLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLE-KRQVEEIA 297 (424)
Q Consensus 220 ~l~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~-~~~~~~~~ 297 (424)
.+.+....+ ..+..++| ++.... .+ .. .+.++..|++. ++++|||+|||+.... ...+..++
T Consensus 199 ~~~~~~~~~--~~~~~~~g~~~~~~~-~~---------~~--~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~ 262 (401)
T cd03784 199 AVLPPPPDW--PRFDLVTGYGFRDVP-YN---------GP--PPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDV 262 (401)
T ss_pred ccCCCCCCc--cccCcEeCCCCCCCC-CC---------CC--CCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHH
Confidence 111100011 12344554 322211 00 01 22678888865 4569999999998644 45678899
Q ss_pred HHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCC
Q 036740 298 RGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGV 377 (424)
Q Consensus 298 ~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 377 (424)
++++..+.++||+++.. ... . ...++|+++.+|+||.++|+++++ ||||||+||++||+++||
T Consensus 263 ~a~~~~~~~~i~~~g~~-~~~----~----------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~Gv 325 (401)
T cd03784 263 EAVATLGQRAILSLGWG-GLG----A----------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGV 325 (401)
T ss_pred HHHHHcCCeEEEEccCc-ccc----c----------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCC
Confidence 99999999999998765 221 1 123589999999999999999999 999999999999999999
Q ss_pred cEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 378 PVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 378 P~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
|+|++|+..||+.||+++++ +|+|+.++.. .++.++|.++|+
T Consensus 326 P~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~~---~~~~~~l~~al~ 367 (401)
T cd03784 326 PQLVVPFFGDQPFWAARVAE-LGAGPALDPR---ELTAERLAAALR 367 (401)
T ss_pred CEEeeCCCCCcHHHHHHHHH-CCCCCCCCcc---cCCHHHHHHHHH
Confidence 99999999999999999998 9999999876 589999998875
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-39 Score=308.99 Aligned_cols=349 Identities=18% Similarity=0.219 Sum_probs=218.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCC-C-CcchHHHH
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNS-K-QNDRKHYM 83 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~-~-~~~~~~~~ 83 (424)
+|||+|+..|++||++|+++||++|.++||+|+|+|++.+.+.+++ .|+.|..++......... . .+....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-----ag~~f~~~~~~~~~~~~~~~~~~~~~~~~ 75 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-----AGLAFVAYPIRDSELATEDGKFAGVKSFR 75 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-----hCcceeeccccCChhhhhhhhhhccchhH
Confidence 6899999999999999999999999999999999999999999999 898888776541111111 1 11101111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCCc
Q 036740 84 SEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVND 163 (424)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 163 (424)
. ..........++++-+.+. .+|+++.|.....+ .+++..++|++.......+...... ...+.-...+
T Consensus 76 ~-~~~~~~~~~~~~~~~~~e~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 144 (406)
T COG1819 76 R-LLQQFKKLIRELLELLREL---EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG------LPLPPVGIAG 144 (406)
T ss_pred H-HhhhhhhhhHHHHHHHHhc---chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc------cCcccccccc
Confidence 1 2222223334444444443 89999999665444 8999999999875444322111100 0000000000
Q ss_pred cccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCC-C------eEEEcCchhhhHHHHHHh----h--
Q 036740 164 LIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETD-P------RILVNTFDALEAETLKAI----D-- 230 (424)
Q Consensus 164 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~l~~~~~~l~~~~~~~~----~-- 230 (424)
....+.. .++....+......+ . ......++... . ..+...-+.++....... .
T Consensus 145 ~~~~~~~------~~~~~~~~~~~~~~~---~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (406)
T COG1819 145 KLPIPLY------PLPPRLVRPLIFARS---W----LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRL 211 (406)
T ss_pred ccccccc------ccChhhccccccchh---h----hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCC
Confidence 0001110 000000000000000 0 00000111000 0 000111111111110000 0
Q ss_pred cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEE
Q 036740 231 KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWV 310 (424)
Q Consensus 231 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~ 310 (424)
.....++||+... ...++..| ...++++||+||||.... .+.++.+++++..++.++|..
T Consensus 212 p~~~~~~~~~~~~-----------------~~~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~ 271 (406)
T COG1819 212 PFIGPYIGPLLGE-----------------AANELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVS 271 (406)
T ss_pred CCCcCcccccccc-----------------ccccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEe
Confidence 1123444444433 11334444 344677999999999976 788999999999999999998
Q ss_pred EecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccccchhH
Q 036740 311 SRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGT 390 (424)
Q Consensus 311 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~ 390 (424)
.+.. .. .+. ..++|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||++
T Consensus 272 ~~~~-~~-----~~~---------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~ 334 (406)
T COG1819 272 LGGA-RD-----TLV---------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPL 334 (406)
T ss_pred cccc-cc-----ccc---------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhH
Confidence 8652 11 111 35599999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 391 NAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 391 na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
||.|+++ +|+|..+.++ .++.+.|+++|++
T Consensus 335 nA~rve~-~G~G~~l~~~---~l~~~~l~~av~~ 364 (406)
T COG1819 335 NAERVEE-LGAGIALPFE---ELTEERLRAAVNE 364 (406)
T ss_pred HHHHHHH-cCCceecCcc---cCCHHHHHHHHHH
Confidence 9999998 9999999987 7999999999864
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.7e-39 Score=323.86 Aligned_cols=364 Identities=25% Similarity=0.367 Sum_probs=223.8
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCC--------ceEEEcCCCCCCCCCCCC-
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDG--------LSFASFSDGYDDGFNSKQ- 76 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~g--------i~~~~~~~~~~~~~~~~~- 76 (424)
..++++++.|++||++|++.+|+.|+++||+||++++.......... ..... +.+...+++++.......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 46888999999999999999999999999999999988766554331 10011 111111122222221111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcC-CCcEEEechhhHHHHHHHhhhhccCC
Q 036740 77 NDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYH-LPSALLWLQPALVFDVYYYYFYGYGD 155 (424)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
.. ......+...+...+....+.+......++|++|+|.+..+...++.... ++...++..++....+..+.+.
T Consensus 84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~---- 158 (496)
T KOG1192|consen 84 DI-SESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL---- 158 (496)
T ss_pred HH-HHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc----
Confidence 11 11134444445555555444333221234999999998777777777765 8888887776665554333221
Q ss_pred cccCcCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHH---------HHHHH----hcc--CCCeEEEcC-ch
Q 036740 156 LIEGKVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKE---------QMEAI----VEE--TDPRILVNT-FD 219 (424)
Q Consensus 156 ~p~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----~~~--~~~~~l~~~-~~ 219 (424)
.++|........+.+.+..+..|... ......... ..... ... ....++.++ +.
T Consensus 159 ---------~~~p~~~~~~~~~~~~~~~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 228 (496)
T KOG1192|consen 159 ---------SYVPSPFSLSSGDDMSFPERVPNLIK-KDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFI 228 (496)
T ss_pred ---------cccCcccCccccccCcHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEE
Confidence 12222211111123333333211100 000000000 00000 000 001122222 33
Q ss_pred hhhHHHHHHh-h---cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCC--ceEEEEecccc---cCCH
Q 036740 220 ALEAETLKAI-D---KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKS--SVIYVAFGTIC---VLEK 290 (424)
Q Consensus 220 ~l~~~~~~~~-~---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~vvyvs~GS~~---~~~~ 290 (424)
.++......+ . .++++++||+....... ......+|++..+.+ ++|||||||+. .++.
T Consensus 229 ~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~-------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~ 295 (496)
T KOG1192|consen 229 FLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ-------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPE 295 (496)
T ss_pred EEccCcccCCCCCCCCCCceEECcEEecCccc-------------cccccHHHHHHHhhccCCeEEEECCcccccccCCH
Confidence 3333322222 1 34699999998772110 102466777776665 89999999999 7899
Q ss_pred HHHHHHHHHHHhc-CCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhh-hccccceeeecccChhH
Q 036740 291 RQVEEIARGLLDS-GHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEV-LSHEAVGCFVTHCGWSS 368 (424)
Q Consensus 291 ~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~l-L~~~~~~~~I~HgG~gs 368 (424)
+++.+++.+++.+ +++|+|+.... ... .++ +++.++.+.|+.+.+|+||.++ |+|++++||||||||||
T Consensus 296 ~~~~~l~~~l~~~~~~~FiW~~~~~-~~~----~~~----~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nS 366 (496)
T KOG1192|consen 296 EQKKELAKALESLQGVTFLWKYRPD-DSI----YFP----EGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNS 366 (496)
T ss_pred HHHHHHHHHHHhCCCceEEEEecCC-cch----hhh----hcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccH
Confidence 9999999999999 88899999765 221 122 2221111357888899999998 59999999999999999
Q ss_pred HHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeec
Q 036740 369 SLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 369 ~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
++|++++|||||++|+++||+.||+++++ .|.|..+.+.
T Consensus 367 t~E~~~~GvP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~~ 405 (496)
T KOG1192|consen 367 TLESIYSGVPMVCVPLFGDQPLNARLLVR-HGGGGVLDKR 405 (496)
T ss_pred HHHHHhcCCceecCCccccchhHHHHHHh-CCCEEEEehh
Confidence 99999999999999999999999999999 8888888776
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.96 E-value=2e-26 Score=216.73 Aligned_cols=305 Identities=17% Similarity=0.193 Sum_probs=198.6
Q ss_pred CeEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHH-
Q 036740 7 PHFLLLTFP-IQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMS- 84 (424)
Q Consensus 7 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (424)
|||+|...+ +.||+.+++.||++| |||+|+|++.....+.+.. . +....+++-.........+. .....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----R-FPVREIPGLGPIQENGRLDR-WKTVRN 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----c-cCEEEccCceEeccCCccch-HHHHHH
Confidence 789988886 899999999999999 6999999998877666655 3 56666653222211111111 11111
Q ss_pred --HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCC
Q 036740 85 --EFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVN 162 (424)
Q Consensus 85 --~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 162 (424)
.........++++.+.+... +||+||+| +.+.+..+|+..|+|++.+.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~---~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~-------------------- 127 (318)
T PF13528_consen 72 NIRWLARLARRIRREIRWLREF---RPDLVISD-FYPLAALAARRAGIPVIVISNQYWFL-------------------- 127 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc---CCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHcc--------------------
Confidence 11223344455555666555 99999999 45567899999999999986653210
Q ss_pred ccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHH--HhccCCCeEEEcCchhhhHHHHHHhhcCCeEEeccc
Q 036740 163 DLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEA--IVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPL 240 (424)
Q Consensus 163 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl 240 (424)
.+.. .+.. .......+.+.... ...+ +..+..++. .... . ..+..++||+
T Consensus 128 ----~~~~----------~~~~------~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~-~~~~---~--~~~~~~~~p~ 179 (318)
T PF13528_consen 128 ----HPNF----------WLPW------DQDFGRLIERYIDRYHFPPA--DRRLALSFY-PPLP---P--FFRVPFVGPI 179 (318)
T ss_pred ----cccC----------Ccch------hhhHHHHHHHhhhhccCCcc--cceecCCcc-cccc---c--cccccccCch
Confidence 0000 0000 01111222222221 2223 444444444 1100 0 2246678888
Q ss_pred cCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcC-CCEEEEEecCCCCCc
Q 036740 241 VASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSG-HPFLWVSRESDNKDK 319 (424)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~ 319 (424)
..+.... .. ..+++.|+|+||..... .++++++..+ ..+++. +.. ..+
T Consensus 180 ~~~~~~~---------------------~~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~-~~~- 228 (318)
T PF13528_consen 180 IRPEIRE---------------------LP-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN-AAD- 228 (318)
T ss_pred hcccccc---------------------cC-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC-ccc-
Confidence 7652110 00 12344799999986632 6667777765 566655 433 211
Q ss_pred cCCCCchhHHHHHHHHhCCCeEEeccc--chhhhhccccceeeecccChhHHHHHHhcCCcEeeccc--ccchhHHHHHH
Q 036740 320 DKDKGEDDVMMKYKEELNEKGMIVPWC--SQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQ--WTDQGTNAKII 395 (424)
Q Consensus 320 ~~~~lp~~~~~~~~~~~~~n~~v~~~~--pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv 395 (424)
...+|+.+..+. ...++++.|++ +|+|||+||++|++++|+|+|++|. ..||..||+++
T Consensus 229 ---------------~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l 291 (318)
T PF13528_consen 229 ---------------PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL 291 (318)
T ss_pred ---------------ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH
Confidence 124899999876 45779999998 9999999999999999999999999 77999999999
Q ss_pred HhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 396 VDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 396 ~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
++ +|+|..++.. +++++.|+++|++
T Consensus 292 ~~-~G~~~~~~~~---~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 292 EE-LGLGIVLSQE---DLTPERLAEFLER 316 (318)
T ss_pred HH-CCCeEEcccc---cCCHHHHHHHHhc
Confidence 99 9999999876 8999999999875
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.93 E-value=1.6e-23 Score=197.88 Aligned_cols=306 Identities=15% Similarity=0.144 Sum_probs=193.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh--hhcCCCCCCCCceEEEcCCC-CCCCCCCCCcchHHHH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR--RMANNPTPEDGLSFASFSDG-YDDGFNSKQNDRKHYM 83 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~i~~~~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~ 83 (424)
.+|++...|+.||+.|.+++|++|.++||+|.|+++..-.+ .+.+ .|+.|..++.. +.. ... ...+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~-----~g~~~~~~~~~~l~~-----~~~-~~~~ 70 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK-----ENIPYYSISSGKLRR-----YFD-LKNI 70 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc-----cCCcEEEEeccCcCC-----Cch-HHHH
Confidence 47899999999999999999999999999999999765432 2334 68888887632 211 111 2223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc--hhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcC
Q 036740 84 SEFKRRSSEALAELITASQNEGGQPFTCLVYPQLL--PWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKV 161 (424)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 161 (424)
..........+ +..+-+++. +||+||+.... ..+..+|..+++|++.....
T Consensus 71 ~~~~~~~~~~~-~~~~i~~~~---kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n----------------------- 123 (352)
T PRK12446 71 KDPFLVMKGVM-DAYVRIRKL---KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD----------------------- 123 (352)
T ss_pred HHHHHHHHHHH-HHHHHHHhc---CCCEEEecCchhhHHHHHHHHHcCCCEEEECCC-----------------------
Confidence 33322222222 222333333 99999987544 34688999999999874221
Q ss_pred CccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEecccc
Q 036740 162 NDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLV 241 (424)
Q Consensus 162 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~ 241 (424)
.+||+. . +.. .+.+ +.+ ..+|++-. ..++..++.++|+..
T Consensus 124 ----~~~g~~-----------------------n----r~~--~~~a--~~v-~~~f~~~~----~~~~~~k~~~tG~Pv 163 (352)
T PRK12446 124 ----MTPGLA-----------------------N----KIA--LRFA--SKI-FVTFEEAA----KHLPKEKVIYTGSPV 163 (352)
T ss_pred ----CCccHH-----------------------H----HHH--HHhh--CEE-EEEccchh----hhCCCCCeEEECCcC
Confidence 022220 0 011 1122 332 33343321 222223688899877
Q ss_pred CCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHH-HHHHHHHHHhcCCCEEEEEecCCCCCcc
Q 036740 242 ASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQ-VEEIARGLLDSGHPFLWVSRESDNKDKD 320 (424)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~-~~~~~~~l~~~~~~~i~~~~~~~~~~~~ 320 (424)
.+.... . ...+..+.+.-.+++++|+|..||......+. +..++..+. .+..++|.++.. .
T Consensus 164 r~~~~~-----------~-~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~-~---- 225 (352)
T PRK12446 164 REEVLK-----------G-NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKG-N---- 225 (352)
T ss_pred Cccccc-----------c-cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCc-h----
Confidence 652211 0 11222223333456779999999998644332 333444442 246788887644 1
Q ss_pred CCCCchhHHHHHHHHhCCCeEEeccc-c-hhhhhccccceeeecccChhHHHHHHhcCCcEeecccc-----cchhHHHH
Q 036740 321 KDKGEDDVMMKYKEELNEKGMIVPWC-S-QVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW-----TDQGTNAK 393 (424)
Q Consensus 321 ~~~lp~~~~~~~~~~~~~n~~v~~~~-p-q~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~ 393 (424)
+. +... . ..+..+..|+ + ..++++++++ +|||||.+|+.|++++|+|+|++|+. .||..||.
T Consensus 226 ---~~----~~~~-~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~ 294 (352)
T PRK12446 226 ---LD----DSLQ-N-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAE 294 (352)
T ss_pred ---HH----HHHh-h-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHH
Confidence 11 1111 1 1356667887 4 3568999999 99999999999999999999999985 48999999
Q ss_pred HHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 394 IIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 394 rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
.+++ .|+|..+... +++++.|.++++
T Consensus 295 ~l~~-~g~~~~l~~~---~~~~~~l~~~l~ 320 (352)
T PRK12446 295 SFER-QGYASVLYEE---DVTVNSLIKHVE 320 (352)
T ss_pred HHHH-CCCEEEcchh---cCCHHHHHHHHH
Confidence 9999 9999999865 689998888775
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=3.3e-22 Score=187.65 Aligned_cols=291 Identities=17% Similarity=0.157 Sum_probs=164.9
Q ss_pred eEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCce-EEEcCCCCCCCCCC-CCcchHHHHH
Q 036740 8 HFLLLTFP-IQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLS-FASFSDGYDDGFNS-KQNDRKHYMS 84 (424)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~-~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (424)
||+|...+ +.||+.|.++|+++|.+ ||+|+|+++......+.. .++. +..+|. +.-...+ .-+. ...+.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-----~~~~~~~~~p~-~~~~~~~~~~~~-~~~l~ 72 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-----YGFKVFETFPG-IKLKGEDGKVNI-VKTLR 72 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-----hcCcceeccCC-ceEeecCCcCcH-HHHHH
Confidence 57776666 55999999999999999 999999998885555555 5555 333331 1110000 0112 11111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCCcc
Q 036740 85 EFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVNDL 164 (424)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 164 (424)
.........+.+..+.+.+. +||+||+| +.+.+..+|+.+|||++.+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~---~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~----------------------- 125 (321)
T TIGR00661 73 NKEYSPKKAIRREINIIREY---NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT----------------------- 125 (321)
T ss_pred hhccccHHHHHHHHHHHHhc---CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh-----------------------
Confidence 00011012333344444444 99999999 6677899999999999987543110
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeE--EeccccC
Q 036740 165 IELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMI--AIGPLVA 242 (424)
Q Consensus 165 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~vGpl~~ 242 (424)
..|+. . .. .....+ .......... +..+...++.... . .++.. ..+|+
T Consensus 126 -~~~~~----~-------~~------~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~----~--~p~~~~~~~~~~-- 175 (321)
T TIGR00661 126 -RYPLK----T-------DL------IVYPTM---AALRIFNERC-ERFIVPDYPFPYT----I--CPKIIKNMEGPL-- 175 (321)
T ss_pred -cCCcc----c-------ch------hHHHHH---HHHHHhcccc-ceEeeecCCCCCC----C--CccccccCCCcc--
Confidence 01111 0 00 000001 1111111110 2222232221110 0 00000 00111
Q ss_pred CCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCC
Q 036740 243 SALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKD 322 (424)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~ 322 (424)
...+..+|... +++.|+|.+||.. ...++++++..+. +.+.+... ..
T Consensus 176 ------------------~~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~-~~----- 222 (321)
T TIGR00661 176 ------------------IRYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY-EV----- 222 (321)
T ss_pred ------------------cchhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC-CC-----
Confidence 11222223221 3346777777743 2355667766542 22332222 11
Q ss_pred CCchhHHHHHHHHhCCCeEEecccc--hhhhhccccceeeecccChhHHHHHHhcCCcEeeccccc--chhHHHHHHHhh
Q 036740 323 KGEDDVMMKYKEELNEKGMIVPWCS--QVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT--DQGTNAKIIVDF 398 (424)
Q Consensus 323 ~lp~~~~~~~~~~~~~n~~v~~~~p--q~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~ 398 (424)
.. . ..++|+.+.+|.| ..++|+.+++ +|||||++|++||+++|+|+|++|... ||..||+.+++
T Consensus 223 -~~----~----~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~- 290 (321)
T TIGR00661 223 -AK----N----SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED- 290 (321)
T ss_pred -Cc----c----ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-
Confidence 10 1 2348999999997 3567888888 999999999999999999999999855 89999999998
Q ss_pred hcceeEeeec
Q 036740 399 CKTGVRVKAN 408 (424)
Q Consensus 399 ~G~G~~l~~~ 408 (424)
+|+|+.++..
T Consensus 291 ~g~~~~l~~~ 300 (321)
T TIGR00661 291 LGCGIALEYK 300 (321)
T ss_pred CCCEEEcChh
Confidence 9999999865
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=1.2e-19 Score=169.56 Aligned_cols=304 Identities=14% Similarity=0.161 Sum_probs=184.9
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCC-EEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGT-RVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSE 85 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+...... .++.+..++.+-........ .+..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~---~~~~~~~I~~~~~~~~~~~~-----~~~~ 72 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ---YGIEFELIPSGGLRRKGSLK-----LLKA 72 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc---cCceEEEEecccccccCcHH-----HHHH
Confidence 57899999999999999999999999999 577776554443322211 67888887744322221111 1211
Q ss_pred HHHHHHH--HHHHHHHHHhhcCCCCeeEEEeCCCc--hhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcC
Q 036740 86 FKRRSSE--ALAELITASQNEGGQPFTCLVYPQLL--PWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKV 161 (424)
Q Consensus 86 ~~~~~~~--~~~~~l~~l~~~~~~~~D~vv~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 161 (424)
....... ....++++. +||+||+-..+ ..+..+|..+|||.+.--
T Consensus 73 ~~~~~~~~~~a~~il~~~------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihE------------------------- 121 (357)
T COG0707 73 PFKLLKGVLQARKILKKL------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHE------------------------- 121 (357)
T ss_pred HHHHHHHHHHHHHHHHHc------CCCEEEecCCccccHHHHHHHhCCCCEEEEe-------------------------
Confidence 1111111 123444443 99999983333 567888888999999831
Q ss_pred CccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEecccc
Q 036740 162 NDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLV 241 (424)
Q Consensus 162 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~ 241 (424)
...+||+- + +.. .+. ...+..+|+..+. ...+.++..+|-..
T Consensus 122 --qn~~~G~a-n----------------------k~~-------~~~--a~~V~~~f~~~~~----~~~~~~~~~tG~Pv 163 (357)
T COG0707 122 --QNAVPGLA-N----------------------KIL-------SKF--AKKVASAFPKLEA----GVKPENVVVTGIPV 163 (357)
T ss_pred --cCCCcchh-H----------------------HHh-------HHh--hceeeeccccccc----cCCCCceEEecCcc
Confidence 12244440 0 000 011 1223334433111 11122477778544
Q ss_pred CCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHH-HHHHHHhc--CCCEEEEEecCCCCC
Q 036740 242 ASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEE-IARGLLDS--GHPFLWVSRESDNKD 318 (424)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~-~~~~l~~~--~~~~i~~~~~~~~~~ 318 (424)
.+.... ++..-..+.. ..++++|+|.-||..... ++. +.+++... +..+++.++..
T Consensus 164 r~~~~~-------------~~~~~~~~~~-~~~~~~ilV~GGS~Ga~~---ln~~v~~~~~~l~~~~~v~~~~G~~---- 222 (357)
T COG0707 164 RPEFEE-------------LPAAEVRKDG-RLDKKTILVTGGSQGAKA---LNDLVPEALAKLANRIQVIHQTGKN---- 222 (357)
T ss_pred cHHhhc-------------cchhhhhhhc-cCCCcEEEEECCcchhHH---HHHHHHHHHHHhhhCeEEEEEcCcc----
Confidence 431110 0011111111 115679999999988433 332 33333333 34555655443
Q ss_pred ccCCCCchhHHHHHHHHhC-CC-eEEecccch-hhhhccccceeeecccChhHHHHHHhcCCcEeecccc----cchhHH
Q 036740 319 KDKDKGEDDVMMKYKEELN-EK-GMIVPWCSQ-VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW----TDQGTN 391 (424)
Q Consensus 319 ~~~~~lp~~~~~~~~~~~~-~n-~~v~~~~pq-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~----~DQ~~n 391 (424)
.+ ++..+... .+ +.+..|..+ ..+++.+++ +||++|.+|+.|+++.|+|+|.+|.. .||..|
T Consensus 223 ----~~-----~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~N 291 (357)
T COG0707 223 ----DL-----EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYN 291 (357)
T ss_pred ----hH-----HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHH
Confidence 11 22222222 23 777799987 458888998 99999999999999999999999974 389999
Q ss_pred HHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 392 AKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 392 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
|+.+++ .|.|..++.. .+|.+++.+.|.
T Consensus 292 A~~l~~-~gaa~~i~~~---~lt~~~l~~~i~ 319 (357)
T COG0707 292 AKFLEK-AGAALVIRQS---ELTPEKLAELIL 319 (357)
T ss_pred HHHHHh-CCCEEEeccc---cCCHHHHHHHHH
Confidence 999999 9999999976 699999988875
No 32
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.81 E-value=1.6e-17 Score=147.87 Aligned_cols=335 Identities=15% Similarity=0.144 Sum_probs=204.4
Q ss_pred CCCeEEEEcC--CCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcCCCCCCCCceEEEcCCCC--CCCCCCCCcc
Q 036740 5 QQPHFLLLTF--PIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGY--DDGFNSKQND 78 (424)
Q Consensus 5 ~~~~il~~~~--~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~--~~~~~~~~~~ 78 (424)
+++||+|++. .+.||...+..||.+|++. |.+|+++++..-..-+.-. .|++|+.+|.-. +.+.....+.
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~----~gVd~V~LPsl~k~~~G~~~~~d~ 83 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP----AGVDFVKLPSLIKGDNGEYGLVDL 83 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc----ccCceEecCceEecCCCceeeeec
Confidence 5779999998 4779999999999999997 9999999976554433221 799999998432 2222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCccc
Q 036740 79 RKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIE 158 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~ 158 (424)
..-...+.+.-.+.+....+.+ +||++|+|.+-+ + +-.++ .|..- .....+..+
T Consensus 84 -~~~l~e~~~~Rs~lil~t~~~f------kPDi~IVd~~P~-G--lr~EL-~ptL~--------------yl~~~~t~~- 137 (400)
T COG4671 84 -DGDLEETKKLRSQLILSTAETF------KPDIFIVDKFPF-G--LRFEL-LPTLE--------------YLKTTGTRL- 137 (400)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhc------CCCEEEEecccc-c--hhhhh-hHHHH--------------HHhhcCCcc-
Confidence 1114444444444444444443 999999996543 3 11111 11111 000000000
Q ss_pred CcCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh-----cCC
Q 036740 159 GKVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID-----KFN 233 (424)
Q Consensus 159 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-----~~~ 233 (424)
+-++ -...|.+....+ ..+.......+.+.+ |.+++-..+++..+. ..++ ...
T Consensus 138 --------vL~l--r~i~D~p~~~~~---~w~~~~~~~~I~r~y--------D~V~v~GdP~f~d~~-~~~~~~~~i~~k 195 (400)
T COG4671 138 --------VLGL--RSIRDIPQELEA---DWRRAETVRLINRFY--------DLVLVYGDPDFYDPL-TEFPFAPAIRAK 195 (400)
T ss_pred --------eeeh--Hhhhhchhhhcc---chhhhHHHHHHHHhh--------eEEEEecCccccChh-hcCCccHhhhhh
Confidence 0011 111222222222 111112222222222 566664444443222 1222 446
Q ss_pred eEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHh-cCCCEEEEEe
Q 036740 234 MIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD-SGHPFLWVSR 312 (424)
Q Consensus 234 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~-~~~~~i~~~~ 312 (424)
+.|+|.+ ..+ ++... . + |.. .+++--|+||-|... ...+.+...++|-.. .+.+-.|.+-
T Consensus 196 ~~ytG~v-q~~-~~~~~-------~--p------~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~iv 256 (400)
T COG4671 196 MRYTGFV-QRS-LPHLP-------L--P------PHE-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIV 256 (400)
T ss_pred eeEeEEe-ecc-CcCCC-------C--C------CcC-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEE
Confidence 9999998 331 22100 0 1 111 133346889888755 345566666666554 4444344443
Q ss_pred cCCCCCccCCCCchhHHHHHHHHhC--CCeEEecccch-hhhhccccceeeecccChhHHHHHHhcCCcEeecccc---c
Q 036740 313 ESDNKDKDKDKGEDDVMMKYKEELN--EKGMIVPWCSQ-VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW---T 386 (424)
Q Consensus 313 ~~~~~~~~~~~lp~~~~~~~~~~~~--~n~~v~~~~pq-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~---~ 386 (424)
.++ ..|++.+.++....+ +++.+..|-.+ ..++..++. +|+-||+||++|-|++|||.+++|.. .
T Consensus 257 tGP-------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~e 327 (400)
T COG4671 257 TGP-------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPRE 327 (400)
T ss_pred eCC-------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcH
Confidence 331 677767777776666 78999999887 668888888 99999999999999999999999986 3
Q ss_pred chhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 387 DQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 387 DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
||-.-|.|+++ +|+.-++.++ .+|++.++++|.
T Consensus 328 EQliRA~Rl~~-LGL~dvL~pe---~lt~~~La~al~ 360 (400)
T COG4671 328 EQLIRAQRLEE-LGLVDVLLPE---NLTPQNLADALK 360 (400)
T ss_pred HHHHHHHHHHh-cCcceeeCcc---cCChHHHHHHHH
Confidence 99999999999 9999999887 799999999885
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.79 E-value=4e-17 Score=156.06 Aligned_cols=308 Identities=15% Similarity=0.146 Sum_probs=179.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc--hhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHH
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA--YRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYM 83 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
+|||+|...+..||...++.|++.|.++||+|++++.+.. ...... .|+++..++..-.. .... ...+
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~~~~----~~~~-~~~l 70 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSGGLR----RKGS-LANL 70 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-----CCCcEEEEeccCcC----CCCh-HHHH
Confidence 5899999999999999999999999999999999997553 222233 57777766532100 0111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCC--chhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcC
Q 036740 84 SEFKRRSSEALAELITASQNEGGQPFTCLVYPQL--LPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKV 161 (424)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 161 (424)
...... ...+..+.+.+.+. +||+|++... ...+..+++..++|+|......
T Consensus 71 ~~~~~~-~~~~~~~~~~ik~~---~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------------- 124 (357)
T PRK00726 71 KAPFKL-LKGVLQARKILKRF---KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA---------------------- 124 (357)
T ss_pred HHHHHH-HHHHHHHHHHHHhc---CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC----------------------
Confidence 111111 12222333334333 8999999863 2345566777889988531000
Q ss_pred CccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEecccc
Q 036740 162 NDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLV 241 (424)
Q Consensus 162 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~ 241 (424)
.|+ ...+.. ...+ +.++..+...+. ..+..+++++|+..
T Consensus 125 -----~~~---------------------------~~~r~~--~~~~--d~ii~~~~~~~~-----~~~~~~i~vi~n~v 163 (357)
T PRK00726 125 -----VPG---------------------------LANKLL--ARFA--KKVATAFPGAFP-----EFFKPKAVVTGNPV 163 (357)
T ss_pred -----Ccc---------------------------HHHHHH--HHHh--chheECchhhhh-----ccCCCCEEEECCCC
Confidence 000 000111 1122 444433222111 01134688888665
Q ss_pred CCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCC--CEEEEEecCCCCCc
Q 036740 242 ASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGH--PFLWVSRESDNKDK 319 (424)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~ 319 (424)
...... . . ..-.+ +...++..+|++..|+... ......+.+++..... .++|.++.+ ..+
T Consensus 164 ~~~~~~-----------~-~-~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g-~~~- 225 (357)
T PRK00726 164 REEILA-----------L-A-APPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKG-DLE- 225 (357)
T ss_pred ChHhhc-----------c-c-chhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCC-cHH-
Confidence 441110 0 0 10011 1222344467665555431 1222333366655432 334444443 211
Q ss_pred cCCCCchhHHHHHHHHhCCCeEEecccc-hhhhhccccceeeecccChhHHHHHHhcCCcEeeccc----ccchhHHHHH
Q 036740 320 DKDKGEDDVMMKYKEELNEKGMIVPWCS-QVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQ----WTDQGTNAKI 394 (424)
Q Consensus 320 ~~~~lp~~~~~~~~~~~~~n~~v~~~~p-q~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~r 394 (424)
.+. +.. + ..-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..
T Consensus 226 ---~~~----~~~-~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~ 294 (357)
T PRK00726 226 ---EVR----AAY-A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARA 294 (357)
T ss_pred ---HHH----HHh-h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHH
Confidence 111 111 1 223477789985 4689999999 9999999999999999999999997 3689999999
Q ss_pred HHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 395 IVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 395 v~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+.+ .|.|..+..+ +++.++|+++|+
T Consensus 295 i~~-~~~g~~~~~~---~~~~~~l~~~i~ 319 (357)
T PRK00726 295 LVD-AGAALLIPQS---DLTPEKLAEKLL 319 (357)
T ss_pred HHH-CCCEEEEEcc---cCCHHHHHHHHH
Confidence 998 9999999876 578899998886
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.75 E-value=4.7e-16 Score=148.26 Aligned_cols=309 Identities=16% Similarity=0.164 Sum_probs=178.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch--hhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY--RRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSE 85 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
||++...+..||...++.|++.|.++||+|++++..... ..... .|+++..++-.-... ... ...+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~-~~~~~~ 70 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPK-----AGIPLHTIPVGGLRR----KGS-LKKLKA 70 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccc-----cCCceEEEEecCcCC----CCh-HHHHHH
Confidence 688999999999999999999999999999999875422 11122 467776665321111 111 122222
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCC--chhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCCc
Q 036740 86 FKRRSSEALAELITASQNEGGQPFTCLVYPQL--LPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVND 163 (424)
Q Consensus 86 ~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 163 (424)
+... ...+..+.+.+++. +||+|++... ...+..++...++|++......
T Consensus 71 ~~~~-~~~~~~~~~~i~~~---~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------------ 122 (350)
T cd03785 71 PFKL-LKGVLQARKILKKF---KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------------ 122 (350)
T ss_pred HHHH-HHHHHHHHHHHHhc---CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC------------------------
Confidence 1111 11122233333333 8999998643 3445677888899987521100
Q ss_pred cccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEeccccCC
Q 036740 164 LIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLVAS 243 (424)
Q Consensus 164 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~ 243 (424)
.|+ ...+.. .+.+ +.++..+....+. +...++.++|.....
T Consensus 123 ---~~~---------------------------~~~~~~--~~~~--~~vi~~s~~~~~~-----~~~~~~~~i~n~v~~ 163 (350)
T cd03785 123 ---VPG---------------------------LANRLL--ARFA--DRVALSFPETAKY-----FPKDKAVVTGNPVRE 163 (350)
T ss_pred ---Ccc---------------------------HHHHHH--HHhh--CEEEEcchhhhhc-----CCCCcEEEECCCCch
Confidence 000 000111 1123 5666554433321 223357777765433
Q ss_pred CCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCH-HHHHHHHHHHHhcCCCEEEEEecCCCCCccCC
Q 036740 244 ALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEK-RQVEEIARGLLDSGHPFLWVSRESDNKDKDKD 322 (424)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~ 322 (424)
.... .... .+.+...+++.+|++..|+...... +.+..++..+...+..+++..+.+ ..+
T Consensus 164 ~~~~-------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~---- 224 (350)
T cd03785 164 EILA-------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG-DLE---- 224 (350)
T ss_pred HHhh-------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-cHH----
Confidence 1100 0011 2223333344466666666542111 112233333432233345555433 111
Q ss_pred CCchhHHHHHHHHhCCCeEEeccc-chhhhhccccceeeecccChhHHHHHHhcCCcEeeccc----ccchhHHHHHHHh
Q 036740 323 KGEDDVMMKYKEELNEKGMIVPWC-SQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQ----WTDQGTNAKIIVD 397 (424)
Q Consensus 323 ~lp~~~~~~~~~~~~~n~~v~~~~-pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~~ 397 (424)
.+. +... ...+|+.+.+|+ ...++|+.+++ +|+|+|.+|+.||+++|+|+|+.|. ..+|..|+..+.+
T Consensus 225 ~l~----~~~~-~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~ 297 (350)
T cd03785 225 EVK----KAYE-ELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK 297 (350)
T ss_pred HHH----HHHh-ccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh
Confidence 221 2221 123689999998 44779999999 9999999999999999999999986 3579999999998
Q ss_pred hhcceeEeeecCCCccchHHHHHhhh
Q 036740 398 FCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 398 ~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
.|.|+.++.. +.+.+++.++|+
T Consensus 298 -~g~g~~v~~~---~~~~~~l~~~i~ 319 (350)
T cd03785 298 -AGAAVLIPQE---ELTPERLAAALL 319 (350)
T ss_pred -CCCEEEEecC---CCCHHHHHHHHH
Confidence 9999999864 468888888875
No 35
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.73 E-value=1.6e-15 Score=138.82 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=76.9
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchh-hhh
Q 036740 276 SVIYVAFGTICVLEKRQVEEIARGLLDS--GHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQV-EVL 352 (424)
Q Consensus 276 ~vvyvs~GS~~~~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~-~lL 352 (424)
+.|+|+||..... .....+++++... +.++.++++.. .. ..++ ...+. ...+|+.+..++++. +++
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~-~~------~~~~-l~~~~-~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSS-NP------NLDE-LKKFA-KEYPNIILFIDVENMAELM 239 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCC-Cc------CHHH-HHHHH-HhCCCEEEEeCHHHHHHHH
Confidence 4689999965532 2445677777664 45667776654 21 1100 01222 124689999999985 799
Q ss_pred ccccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHH
Q 036740 353 SHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKI 394 (424)
Q Consensus 353 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 394 (424)
+.+++ +|++|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999975
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.66 E-value=5.9e-14 Score=133.69 Aligned_cols=302 Identities=17% Similarity=0.146 Sum_probs=164.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch--hhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY--RRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMS 84 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
|||+|++.+..||+.....||++|.++||+|++++.+... ..... .|+++..++-.-... ... ...+.
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~-----~g~~~~~i~~~~~~~----~~~-~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPK-----AGIEFYFIPVGGLRR----KGS-FRLIK 70 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccccc-----CCCceEEEeccCcCC----CCh-HHHHH
Confidence 5899999999999998889999999999999999864321 11222 577777665321110 111 22222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc--hhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCC
Q 036740 85 EFKRRSSEALAELITASQNEGGQPFTCLVYPQLL--PWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVN 162 (424)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 162 (424)
..... ...+..+.+.+.+. +||+|++.... ..+..+++.+++|++..... .
T Consensus 71 ~~~~~-~~~~~~l~~~i~~~---~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~-~---------------------- 123 (348)
T TIGR01133 71 TPLKL-LKAVFQARRILKKF---KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN-A---------------------- 123 (348)
T ss_pred HHHHH-HHHHHHHHHHHHhc---CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-C----------------------
Confidence 21111 11222333334433 99999987543 33455677889998742100 0
Q ss_pred ccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEeccccC
Q 036740 163 DLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLVA 242 (424)
Q Consensus 163 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~ 242 (424)
.+ . ...+.. .+.+ +.++..+. +... .+ ...++|....
T Consensus 124 ----~~---------------~------------~~~~~~--~~~~--d~ii~~~~-~~~~----~~---~~~~i~n~v~ 160 (348)
T TIGR01133 124 ----VP---------------G------------LTNKLL--SRFA--KKVLISFP-GAKD----HF---EAVLVGNPVR 160 (348)
T ss_pred ----Cc---------------c------------HHHHHH--HHHh--CeeEECch-hHhh----cC---CceEEcCCcC
Confidence 00 0 000111 1233 55555433 2211 11 2355554332
Q ss_pred CCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHh---cCCCEEEEEecCCCCCc
Q 036740 243 SALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD---SGHPFLWVSRESDNKDK 319 (424)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~ 319 (424)
..... . . .. .+++...+++.+|.+..|+... ......+.+++.. .+..+++..+.. ..
T Consensus 161 ~~~~~-----------~-~-~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~--~~- 221 (348)
T TIGR01133 161 QEIRS-----------L-P-VP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN--DL- 221 (348)
T ss_pred HHHhc-----------c-c-ch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc--hH-
Confidence 21000 0 0 00 1122222333345443345442 1112223344433 334454433221 11
Q ss_pred cCCCCchhHHHHHHHHhCC-C-eEEeccc--chhhhhccccceeeecccChhHHHHHHhcCCcEeecccc---cchhHHH
Q 036740 320 DKDKGEDDVMMKYKEELNE-K-GMIVPWC--SQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW---TDQGTNA 392 (424)
Q Consensus 320 ~~~~lp~~~~~~~~~~~~~-n-~~v~~~~--pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~---~DQ~~na 392 (424)
+.+.+...+ + ..++.|. ...++++.+++ +|+++|.+|+.||+++|+|+|++|.. .+|..|+
T Consensus 222 ----------~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 289 (348)
T TIGR01133 222 ----------EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNA 289 (348)
T ss_pred ----------HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHH
Confidence 112111111 1 1233344 45678999999 99999988999999999999999863 4788999
Q ss_pred HHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 393 KIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 393 ~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
..+++ .|.|..++.. ..+.++|+++++
T Consensus 290 ~~i~~-~~~G~~~~~~---~~~~~~l~~~i~ 316 (348)
T TIGR01133 290 KFLED-LGAGLVIRQK---ELLPEKLLEALL 316 (348)
T ss_pred HHHHH-CCCEEEEecc---cCCHHHHHHHHH
Confidence 99998 9999988764 467889988875
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=8e-13 Score=127.43 Aligned_cols=131 Identities=18% Similarity=0.266 Sum_probs=88.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhc-CCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccch-hh
Q 036740 273 PKSSVIYVAFGTICVLEKRQVEEIARGLLDS-GHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQ-VE 350 (424)
Q Consensus 273 ~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq-~~ 350 (424)
+++++|++..|+.... ..+..+++++... +.++++..+.. . .+. +..+...+..++|+.+.+|+++ .+
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~-~------~~~-~~l~~~~~~~~~~v~~~g~~~~~~~ 269 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN-E------ALK-QSLEDLQETNPDALKVFGYVENIDE 269 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC-H------HHH-HHHHHHHhcCCCcEEEEechhhHHH
Confidence 3455777777877532 2355667777553 45666655432 1 111 0001111223358999999987 47
Q ss_pred hhccccceeeecccChhHHHHHHhcCCcEeec-ccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 351 VLSHEAVGCFVTHCGWSSSLESLVYGVPVVAF-PQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 351 lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+++.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|.|+... +.++++++|+
T Consensus 270 l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~~-------~~~~l~~~i~ 333 (380)
T PRK13609 270 LFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVIR-------DDEEVFAKTE 333 (380)
T ss_pred HHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEEC-------CHHHHHHHHH
Confidence 9999998 99999988999999999999985 677778899999998 89988653 3455655543
No 38
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=8e-16 Score=130.30 Aligned_cols=132 Identities=18% Similarity=0.269 Sum_probs=91.1
Q ss_pred eEEEEecccccCCH-HHHHHHHHHHHhc--CCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccc-hhhhh
Q 036740 277 VIYVAFGTICVLEK-RQVEEIARGLLDS--GHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCS-QVEVL 352 (424)
Q Consensus 277 vvyvs~GS~~~~~~-~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~p-q~~lL 352 (424)
+|+|+.||.....- +.+..++..+... ...+++.++.. ... ... ..+. ....|+.+.+|.+ ..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~-~~~----~~~----~~~~-~~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN-NYE----ELK----IKVE-NFNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC-ECH----HHC----CCHC-CTTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC-cHH----HHH----HHHh-ccCCcEEEEechhhHHHHH
Confidence 48999998764211 1122333333332 47788887654 222 111 1110 1126899999999 68899
Q ss_pred ccccceeeecccChhHHHHHHhcCCcEeeccccc----chhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhhC
Q 036740 353 SHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT----DQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 353 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
+.+++ +|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+... ..+.+.|.++|++
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~---~~~~~~L~~~i~~ 140 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDES---ELNPEELAEAIEE 140 (167)
T ss_dssp HHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECC---C-SCCCHHHHHHC
T ss_pred HHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcc---cCCHHHHHHHHHH
Confidence 99999 999999999999999999999999988 99999999998 9999999865 5678888887753
No 39
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.54 E-value=1.7e-12 Score=124.72 Aligned_cols=310 Identities=11% Similarity=0.007 Sum_probs=170.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCc----eEEEcCCCCCCCCCCCCcchHHH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGL----SFASFSDGYDDGFNSKQNDRKHY 82 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi----~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
.+|++...++.||+.|. +|+++|.++|++|+|++.... .+++ .|+ .+..++- ... .+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~-----~g~~~~~~~~~l~v---------~G~-~~~ 67 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAA-----EGCEVLYSMEELSV---------MGL-REV 67 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHh-----CcCccccChHHhhh---------ccH-HHH
Confidence 47899999999999999 999999999999999985432 3444 343 2222221 011 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEe-CCCchhHHH--HHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccC
Q 036740 83 MSEFKRRSSEALAELITASQNEGGQPFTCLVY-PQLLPWAAE--VARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEG 159 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~-D~~~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~ 159 (424)
+..+.. ....+.+..+.+.+. +||+||. |+-++.... .|+.+|||++.+.+.
T Consensus 68 l~~~~~-~~~~~~~~~~~l~~~---kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P--------------------- 122 (385)
T TIGR00215 68 LGRLGR-LLKIRKEVVQLAKQA---KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP--------------------- 122 (385)
T ss_pred HHHHHH-HHHHHHHHHHHHHhc---CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC---------------------
Confidence 222111 122233444445444 9999995 643333333 788899999874211
Q ss_pred cCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEecc
Q 036740 160 KVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGP 239 (424)
Q Consensus 160 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGp 239 (424)
....|. ..+ .+.+.+. + +.++.. ++ .+.+..... +.+..++|.
T Consensus 123 ---------~~waw~-------------~~~----~r~l~~~------~--d~v~~~-~~-~e~~~~~~~-g~~~~~vGn 165 (385)
T TIGR00215 123 ---------QVWAWR-------------KWR----AKKIEKA------T--DFLLAI-LP-FEKAFYQKK-NVPCRFVGH 165 (385)
T ss_pred ---------cHhhcC-------------cch----HHHHHHH------H--hHhhcc-CC-CcHHHHHhc-CCCEEEECC
Confidence 000011 000 1122221 1 222222 22 222211111 346778885
Q ss_pred ccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhc-----CCCEEEEEecC
Q 036740 240 LVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDS-----GHPFLWVSRES 314 (424)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~-----~~~~i~~~~~~ 314 (424)
...+..... .. ++.+..+-+.-.+++++|.+-.||....-......+++++... +.++++.....
T Consensus 166 Pv~~~~~~~---------~~-~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~ 235 (385)
T TIGR00215 166 PLLDAIPLY---------KP-DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF 235 (385)
T ss_pred chhhhcccc---------CC-CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence 543311000 00 2233333333344566888877886642122344555554432 23454443322
Q ss_pred CCCCccCCCCchhHHHHHHHHhC--CCeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeec----cccc--
Q 036740 315 DNKDKDKDKGEDDVMMKYKEELN--EKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAF----PQWT-- 386 (424)
Q Consensus 315 ~~~~~~~~~lp~~~~~~~~~~~~--~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~----P~~~-- 386 (424)
... ..+ +.+.+... .++.+..+ ....+++.+++ +|+-+|..|+ |++++|+|+|++ |+..
T Consensus 236 -~~~---~~~-----~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~ 302 (385)
T TIGR00215 236 -KRR---LQF-----EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLI 302 (385)
T ss_pred -hhH---HHH-----HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHH
Confidence 111 011 12222221 23333322 33568888998 9999999988 999999999999 8753
Q ss_pred -------chhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 387 -------DQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 387 -------DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+|..|++.+.+ .++...+.-. ..|++.|.+.+.
T Consensus 303 ~~~~~~~~~~~~~nil~~-~~~~pel~q~---~~~~~~l~~~~~ 342 (385)
T TIGR00215 303 ARRLVKTDYISLPNILAN-RLLVPELLQE---ECTPHPLAIALL 342 (385)
T ss_pred HHHHHcCCeeeccHHhcC-CccchhhcCC---CCCHHHHHHHHH
Confidence 27889999998 9999988754 689999988775
No 40
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.45 E-value=1.8e-14 Score=118.08 Aligned_cols=124 Identities=23% Similarity=0.260 Sum_probs=82.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHH
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKR 88 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424)
|+|.+.|+.||++|+++||++|++|||+|++++++.+.+.+++ .|++|.+++.. ......... ...+..+..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~--~~~~~~~~~-~~~~~~~~~ 72 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-----AGLEFVPIPGD--SRLPRSLEP-LANLRRLAR 72 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-----TT-EEEESSSC--GGGGHHHHH-HHHHHCHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-----cCceEEEecCC--cCcCcccch-hhhhhhHHH
Confidence 7899999999999999999999999999999999999999999 99999999866 000000001 111111111
Q ss_pred H--HHHHHHHHHHHHhhc------CCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhh
Q 036740 89 R--SSEALAELITASQNE------GGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPA 140 (424)
Q Consensus 89 ~--~~~~~~~~l~~l~~~------~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~ 140 (424)
. ....+.+.++..... ....+|+++.+.....+..+|++++||++.....+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 73 LIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 1 011111222222111 023678888898778899999999999999766543
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.40 E-value=1.3e-10 Score=112.29 Aligned_cols=118 Identities=16% Similarity=0.238 Sum_probs=83.1
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHh--cCCCEEEEEecCCCCCccCCCCchhHHHHHHHH--hCCCeEEecccch
Q 036740 273 PKSSVIYVAFGTICVLEKRQVEEIARGLLD--SGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEE--LNEKGMIVPWCSQ 348 (424)
Q Consensus 273 ~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~--~~~n~~v~~~~pq 348 (424)
+++++|++..|+... ...+..+++++.. .+..+++..+.. . .+- +.+.+. ..+++.+.+|+.+
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~-~------~l~----~~l~~~~~~~~~v~~~G~~~~ 266 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS-K------ELK----RSLTAKFKSNENVLILGYTKH 266 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC-H------HHH----HHHHHHhccCCCeEEEeccch
Confidence 455688888888762 2345555555433 234555554322 1 111 222222 2357888899976
Q ss_pred -hhhhccccceeeecccChhHHHHHHhcCCcEeec-ccccchhHHHHHHHhhhcceeEee
Q 036740 349 -VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAF-PQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 349 -~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
.++++.+++ +|+.+|..|+.||++.|+|+|+. |..+.|..||..+.+ .|+|+...
T Consensus 267 ~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~ 323 (391)
T PRK13608 267 MNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD 323 (391)
T ss_pred HHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC
Confidence 468999999 99998889999999999999998 777778899999998 99998764
No 42
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.33 E-value=1.9e-10 Score=110.89 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+|+|+|...+..||+.|.+ ++++|.++++++.+++..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVG 37 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEc
Confidence 5799999999999999999 999999988888887743
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.23 E-value=3.7e-09 Score=101.90 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=62.6
Q ss_pred CCeEEecccch-hhhhccccceeeecccChhHHHHHHhcCCcEeecccccchh-HHHHHHHhhhcceeEeeecCCCccch
Q 036740 338 EKGMIVPWCSQ-VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQG-TNAKIIVDFCKTGVRVKANEEGIVES 415 (424)
Q Consensus 338 ~n~~v~~~~pq-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~~~~G~G~~l~~~~~~~~~~ 415 (424)
.++.+.+|+++ .++++.+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|+... +.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~~-------~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFSE-------SP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeecC-------CH
Confidence 57888899987 568899999 999999999999999999999998766665 79999998 99998652 55
Q ss_pred HHHHHhhh
Q 036740 416 DEINRCLE 423 (424)
Q Consensus 416 ~~l~~ai~ 423 (424)
++|+++|.
T Consensus 335 ~~la~~i~ 342 (382)
T PLN02605 335 KEIARIVA 342 (382)
T ss_pred HHHHHHHH
Confidence 66666553
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.23 E-value=7.3e-09 Score=99.75 Aligned_cols=315 Identities=13% Similarity=0.044 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHh--CCCEEE---EEECccchhh--hcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHH----
Q 036740 20 INPSLQFARRLTR--IGTRVT---FAIAISAYRR--MANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKR---- 88 (424)
Q Consensus 20 ~~p~l~La~~L~~--rGh~Vt---~~~~~~~~~~--i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 88 (424)
=.-.++||++|.+ .|++|. |+++..-.+. +.. .| .+..+| .+.....+. ...+.....
T Consensus 10 d~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~-----~g-~~~~~~----sgg~~~~~~-~~~~~~~~~gl~~ 78 (396)
T TIGR03492 10 DLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI-----IG-PTKELP----SGGFSYQSL-RGLLRDLRAGLVG 78 (396)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce-----eC-CCCCCC----CCCccCCCH-HHHHHHHHhhHHH
Confidence 3456788999998 699999 9987654431 222 34 443333 333333333 333333333
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCCccccCC
Q 036740 89 RSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVNDLIELP 168 (424)
Q Consensus 89 ~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~P 168 (424)
.+...+ .+++++ ..+||+||+-.-+. ...+|..+|+|++.+-+.-...+ .-
T Consensus 79 ~~~~~~-~~~~~~----~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~-----------------------~~ 129 (396)
T TIGR03492 79 LTLGQW-RALRKW----AKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY-----------------------WE 129 (396)
T ss_pred HHHHHH-HHHHHH----hhcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee-----------------------ec
Confidence 222222 233443 34899998654333 88899999999998644311100 00
Q ss_pred CCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEeccccCCCCCCC
Q 036740 169 GLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLVASALLDG 248 (424)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~ 248 (424)
..+.+...+....+.. ..+. .+ .+..-..+.+ +.++.+. +...+..... +.++.++|-...+.....
T Consensus 130 ~~~~~~~~~~~~~~~G----~~~~---p~-e~n~l~~~~a--~~v~~~~--~~t~~~l~~~-g~k~~~vGnPv~d~l~~~ 196 (396)
T TIGR03492 130 SGPRRSPSDEYHRLEG----SLYL---PW-ERWLMRSRRC--LAVFVRD--RLTARDLRRQ-GVRASYLGNPMMDGLEPP 196 (396)
T ss_pred CCCCCccchhhhccCC----CccC---HH-HHHHhhchhh--CEEeCCC--HHHHHHHHHC-CCeEEEeCcCHHhcCccc
Confidence 0001111111111110 1111 11 1111112233 4444433 2233222111 357999996554421100
Q ss_pred CcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhc----CCCEEEEEecCCCCCccCCCC
Q 036740 249 KEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDS----GHPFLWVSRESDNKDKDKDKG 324 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~----~~~~i~~~~~~~~~~~~~~~l 324 (424)
. .. . + .+++++|.+--||-...-.+.+..+++++... +..|++.+.+. ...+ .+
T Consensus 197 ------------~-~~--~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~-~~~~---~~ 254 (396)
T TIGR03492 197 ------------E-RK--P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPS-LSLE---KL 254 (396)
T ss_pred ------------c-cc--c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCC-CCHH---HH
Confidence 1 10 1 1 22345777777887543333455666666653 45677776433 1110 11
Q ss_pred chhHHHHHHH-Hh--------------CCCeEEecccch-hhhhccccceeeecccChhHHHHHHhcCCcEeecccccch
Q 036740 325 EDDVMMKYKE-EL--------------NEKGMIVPWCSQ-VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQ 388 (424)
Q Consensus 325 p~~~~~~~~~-~~--------------~~n~~v~~~~pq-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 388 (424)
. ..+.+ .. .+++.+..+..+ .++++.+++ +|+-+|..| .|+.+.|+|+|++|.-..|
T Consensus 255 ~----~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q 327 (396)
T TIGR03492 255 Q----AILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQ 327 (396)
T ss_pred H----HHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCH
Confidence 0 11111 00 012555555443 668999999 999999766 9999999999999977777
Q ss_pred hHHHHHHHhhh----cceeEeeecCCCccchHHHHHhhh
Q 036740 389 GTNAKIIVDFC----KTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 389 ~~na~rv~~~~----G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
. ||...++ . |.++.+.. .+.+.|.+++.
T Consensus 328 ~-na~~~~~-~~~l~g~~~~l~~-----~~~~~l~~~l~ 359 (396)
T TIGR03492 328 F-TYGFAEA-QSRLLGGSVFLAS-----KNPEQAAQVVR 359 (396)
T ss_pred H-HHHHHHh-hHhhcCCEEecCC-----CCHHHHHHHHH
Confidence 6 9877775 4 77777653 23466666553
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.13 E-value=7e-08 Score=91.88 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=57.9
Q ss_pred hCCCeEEecccchhh---hhccccceeeecccC----hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeec
Q 036740 336 LNEKGMIVPWCSQVE---VLSHEAVGCFVTHCG----WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 336 ~~~n~~v~~~~pq~~---lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
..+|+.+.+++++.+ +++.+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+++ .+.|...+..
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~~ 317 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD-GENGLLVEPG 317 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC-CcceEEcCCC
Confidence 457899999999765 7888888 886654 37899999999999987754 35666776 7899888754
Q ss_pred CCCccchHHHHHhhh
Q 036740 409 EEGIVESDEINRCLE 423 (424)
Q Consensus 409 ~~~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 318 -----~~~~l~~~i~ 327 (364)
T cd03814 318 -----DAEAFAAALA 327 (364)
T ss_pred -----CHHHHHHHHH
Confidence 5566666654
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.06 E-value=7.5e-08 Score=91.39 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=55.3
Q ss_pred CCCeEEecccchhh---hhccccceeeec----ccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeec
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVT----HCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~----HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
.+++.+.+++++.+ +++.+++ +|+ ..|. .++.||+++|+|+|+.+. ..+...+.+ .+.|...+..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRD-GVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcC-CCcEEEECCC
Confidence 47899999998654 5888888 663 2344 479999999999998654 446667776 6678888754
Q ss_pred CCCccchHHHHHhhh
Q 036740 409 EEGIVESDEINRCLE 423 (424)
Q Consensus 409 ~~~~~~~~~l~~ai~ 423 (424)
+.+++++++.
T Consensus 315 -----d~~~l~~~i~ 324 (359)
T cd03823 315 -----DAEDLAAALE 324 (359)
T ss_pred -----CHHHHHHHHH
Confidence 5677777764
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.03 E-value=3.8e-07 Score=90.42 Aligned_cols=121 Identities=20% Similarity=0.192 Sum_probs=72.2
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhc-CCCEEEEEecCCCCCccCCCCchhHHHHHHHHh-CCCeEEecccchhh---h
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLDS-GHPFLWVSRESDNKDKDKDKGEDDVMMKYKEEL-NEKGMIVPWCSQVE---V 351 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~n~~v~~~~pq~~---l 351 (424)
.+++..|++. ....+..++++++.. +.++++ ++.+ . .. +.+.+.. ..|+.+.+++++.+ +
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~i-vG~G-~-------~~----~~l~~~~~~~~V~f~G~v~~~ev~~~ 328 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAF-VGDG-P-------YR----EELEKMFAGTPTVFTGMLQGDELSQA 328 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEE-EeCC-h-------HH----HHHHHHhccCCeEEeccCCHHHHHHH
Confidence 4445568775 233466677777765 444443 3333 1 11 2222222 25788889998654 7
Q ss_pred hccccceeeecccC----hhHHHHHHhcCCcEeecccccchhHHHHHHHh--hhcceeEeeecCCCccchHHHHHhhh
Q 036740 352 LSHEAVGCFVTHCG----WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVD--FCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 352 L~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~--~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
++.+++ +|.-.. ..++.||+++|+|+|+....+ ....+.+ .-+.|..++.. +.++++++|.
T Consensus 329 ~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~-----d~~~la~~i~ 395 (465)
T PLN02871 329 YASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG-----DVDDCVEKLE 395 (465)
T ss_pred HHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC-----CHHHHHHHHH
Confidence 778888 775432 347889999999999876432 2223331 04677777754 5667776664
No 48
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.97 E-value=1.3e-06 Score=84.47 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=54.9
Q ss_pred CCeEEecccchhh---hhccccceeeecc----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCC
Q 036740 338 EKGMIVPWCSQVE---VLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 410 (424)
Q Consensus 338 ~n~~v~~~~pq~~---lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 410 (424)
+|+.+.+|+|+.+ +++.+++ +++. |-..++.||+++|+|+|+.... .....+++ .+.|...+..
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~-~~~g~~~~~~-- 353 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVD-GVTGLLVDPR-- 353 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccC-CCCeEEeCCC--
Confidence 6888899999865 5788888 7743 2235899999999999987643 35566776 6788888753
Q ss_pred CccchHHHHHhhh
Q 036740 411 GIVESDEINRCLE 423 (424)
Q Consensus 411 ~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 354 ---~~~~l~~~i~ 363 (398)
T cd03800 354 ---DPEALAAALR 363 (398)
T ss_pred ---CHHHHHHHHH
Confidence 5677776664
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=6.2e-08 Score=84.72 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=81.6
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccc-hhhhhccc
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCS-QVEVLSHE 355 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~p-q~~lL~~~ 355 (424)
-|+|++|..- +....-+++..|......+-.+++.. .+ .++ ..+.... ..+|+.+.-... ...+.+.+
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--~p----~l~-~l~k~~~--~~~~i~~~~~~~dma~LMke~ 228 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--NP----TLK-NLRKRAE--KYPNINLYIDTNDMAELMKEA 228 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--Cc----chh-HHHHHHh--hCCCeeeEecchhHHHHHHhc
Confidence 5999998632 23345567777877765555566532 22 221 1112222 236777775555 45688899
Q ss_pred cceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeee
Q 036740 356 AVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKA 407 (424)
Q Consensus 356 ~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 407 (424)
++ .|+-|| .|+.|++.-|+|.+++|+..-|---|...+. +|+-..+..
T Consensus 229 d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~ 276 (318)
T COG3980 229 DL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGY 276 (318)
T ss_pred ch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccC
Confidence 98 888876 4899999999999999999999999999997 999877753
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.94 E-value=2.1e-06 Score=81.14 Aligned_cols=307 Identities=13% Similarity=0.101 Sum_probs=154.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh-hhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR-RMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEF 86 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
||++++....|+...+..++++|.++||+|++++...... .... .++++..++.... .... ...+..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~-~~~~~~- 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA-----LGVKVIPIPLDRR-----GINP-FKDLKA- 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc-----CCceEEecccccc-----ccCh-HhHHHH-
Confidence 4777777788999999999999999999999999765554 2333 6777776653321 0111 111111
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCch--hHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCCcc
Q 036740 87 KRRSSEALAELITASQNEGGQPFTCLVYPQLLP--WAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVNDL 164 (424)
Q Consensus 87 ~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 164 (424)
+..+.+.+... +||+|++..... .+..+++..+.|.+........
T Consensus 69 -------~~~~~~~~~~~---~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------- 115 (359)
T cd03808 69 -------LLRLYRLLRKE---RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLG----------------------- 115 (359)
T ss_pred -------HHHHHHHHHhc---CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcc-----------------------
Confidence 11222333333 899999875432 3344455466666554322110
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhc--CCeEEeccccC
Q 036740 165 IELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDK--FNMIAIGPLVA 242 (424)
Q Consensus 165 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~vGpl~~ 242 (424)
.... . ..........+.+. ....+ +.++..+....+. ....... .....+.|...
T Consensus 116 --------~~~~------~----~~~~~~~~~~~~~~--~~~~~--d~ii~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~ 172 (359)
T cd03808 116 --------FVFT------S----GGLKRRLYLLLERL--ALRFT--DKVIFQNEDDRDL-ALKLGIIKKKKTVLIPGSGV 172 (359)
T ss_pred --------hhhc------c----chhHHHHHHHHHHH--HHhhc--cEEEEcCHHHHHH-HHHhcCCCcCceEEecCCCC
Confidence 0000 0 00001111111111 22334 6666665444332 1111101 12222222211
Q ss_pred CCCCCCCcccCCCCcCCCChhHHhhhhcC-CCCCceEEEEecccccCCHHHHHHHHHHHHhc---CCCEE-EEEecCCCC
Q 036740 243 SALLDGKEQYGGDLCKNSSKEYYMEWLSS-KPKSSVIYVAFGTICVLEKRQVEEIARGLLDS---GHPFL-WVSRESDNK 317 (424)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~---~~~~i-~~~~~~~~~ 317 (424)
+. .. ...... .+++..+++..|++... ..+..++++++.. +..+. +.++.. ..
T Consensus 173 ~~------------------~~-~~~~~~~~~~~~~~i~~~G~~~~~--k~~~~li~~~~~l~~~~~~~~l~i~G~~-~~ 230 (359)
T cd03808 173 DL------------------DR-FSPSPEPIPEDDPVFLFVARLLKD--KGIDELLEAARILKAKGPNVRLLLVGDG-DE 230 (359)
T ss_pred Ch------------------hh-cCccccccCCCCcEEEEEeccccc--cCHHHHHHHHHHHHhcCCCeEEEEEcCC-Cc
Confidence 10 00 000000 12334677777887632 2344444444432 23332 223322 11
Q ss_pred CccCCCCchhHHHH-HHH-HhCCCeEEecccch-hhhhccccceeeecccC----hhHHHHHHhcCCcEeecccccchhH
Q 036740 318 DKDKDKGEDDVMMK-YKE-ELNEKGMIVPWCSQ-VEVLSHEAVGCFVTHCG----WSSSLESLVYGVPVVAFPQWTDQGT 390 (424)
Q Consensus 318 ~~~~~~lp~~~~~~-~~~-~~~~n~~v~~~~pq-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~ 390 (424)
. + ... .. ..+ ...+++.+.++..+ ..++..+++ +|.-.. .+++.||+++|+|+|+.... .
T Consensus 231 ~-~--~~~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~ 297 (359)
T cd03808 231 E-N--PAA----ILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----G 297 (359)
T ss_pred c-h--hhH----HHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----C
Confidence 1 0 110 00 111 12357888887554 558888888 775433 57899999999999986543 3
Q ss_pred HHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 391 NAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 391 na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+...+.+ .+.|...+.. +.++++++|.
T Consensus 298 ~~~~i~~-~~~g~~~~~~-----~~~~~~~~i~ 324 (359)
T cd03808 298 CREAVID-GVNGFLVPPG-----DAEALADAIE 324 (359)
T ss_pred chhhhhc-CcceEEECCC-----CHHHHHHHHH
Confidence 4556665 6778877643 5666776664
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.94 E-value=7.2e-07 Score=87.01 Aligned_cols=120 Identities=9% Similarity=0.007 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch---hhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHH
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY---RRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKH 81 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~---~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
++.||++++....|+-..+..+|+.|+++||+|++++..... +.... .|+.++.++..- ... ... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~-----~~v~~~~~~~~~-~~~---~~~-~~ 71 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSN-----PNITIHPLPPPP-QRL---NKL-PF 71 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcC-----CCEEEEECCCCc-ccc---ccc-hH
Confidence 567899999988999999999999999999999999864322 11233 688888775321 001 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCC-Cc---h-hHHHHHHHcCCCcEEEec
Q 036740 82 YMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQ-LL---P-WAAEVARAYHLPSALLWL 137 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~-~~---~-~~~~~A~~lgiP~v~~~~ 137 (424)
.+..+..... .+..++..+... .+||+|++.. .. . .+..++...+.|+|..+.
T Consensus 72 ~~~~~~~~~~-~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 72 LLFAPLKVLW-QFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 2222111111 111222222221 3899999743 21 1 234456667999887533
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.93 E-value=3.4e-07 Score=87.70 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=51.8
Q ss_pred CCCeEEecccchhh---hhccccceeeecccC---------hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeE
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVTHCG---------WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVR 404 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~HgG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~ 404 (424)
.+|+.+.+++++.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+ ..+.+ .+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~~~-~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELVEE-AGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhhcc-CCcceE
Confidence 47899999998755 6778888 664322 23479999999999998876543 33444 467777
Q ss_pred eeecCCCccchHHHHHhhh
Q 036740 405 VKANEEGIVESDEINRCLE 423 (424)
Q Consensus 405 l~~~~~~~~~~~~l~~ai~ 423 (424)
.+.. +.++++++|.
T Consensus 347 ~~~~-----~~~~l~~~i~ 360 (394)
T cd03794 347 VPPG-----DPEALAAAIL 360 (394)
T ss_pred eCCC-----CHHHHHHHHH
Confidence 7643 5666766654
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.87 E-value=2.9e-06 Score=80.83 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=49.1
Q ss_pred CCCeEEecccchhh---hhccccceeeecc----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeec
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
.+|+.+.+++|+.+ ++..+++ +|.. |...++.||+++|+|+|+... ...+..+.+ .+.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~-~~~g~~~~~~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVAD-GENGFLFPPG 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheec-CceeEEeCCC
Confidence 46899999999855 6778888 6633 334789999999999998653 445667776 6788888754
No 54
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.86 E-value=2.4e-07 Score=88.71 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=78.3
Q ss_pred CCceEEEEecccccC-CHHHHHHHHHHHHhcCC-CEEEEEecCCCCCccCCCCchhHHHHHHHHh---CCCeEEecccch
Q 036740 274 KSSVIYVAFGTICVL-EKRQVEEIARGLLDSGH-PFLWVSRESDNKDKDKDKGEDDVMMKYKEEL---NEKGMIVPWCSQ 348 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~-~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~---~~n~~v~~~~pq 348 (424)
+++.|++++|..... ....+..++++++.... .+.+...+. +.. ...+. + ..+.. .+|+.+.+...+
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~-~~~--~~~l~----~-~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH-PRT--RPRIR----E-AGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC-CCh--HHHHH----H-HHHhhccCCCCEEEECCcCH
Confidence 345778888876543 34567788888877533 244444333 210 00221 2 11122 367888776665
Q ss_pred h---hhhccccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 349 V---EVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 349 ~---~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
. .+++.+++ ||+-.| |.+.||++.|+|+|+++...+ +..+.+ .|++..+.. +.++|.++|+
T Consensus 269 ~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~~------~~~~i~~~i~ 332 (363)
T cd03786 269 LYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVGT------DPEAILAAIE 332 (363)
T ss_pred HHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecCC------CHHHHHHHHH
Confidence 4 45667888 999999 888899999999999874322 334555 677766542 3566666654
No 55
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.84 E-value=3.8e-06 Score=78.18 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=74.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc--chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS--AYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMS 84 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~--~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
|||.+--. ..-|+.-+-.+.++|.++||+|.+.+-+. ..+.+.. .|+++..+...- .+. ...+.
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~~g-------~~~-~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL-----YGIDYIVIGKHG-------DSL-YGKLL 66 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH-----cCCCeEEEcCCC-------CCH-HHHHH
Confidence 55655433 34499999999999999999999998643 3456676 899998886422 111 22222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEech
Q 036740 85 EFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQ 138 (424)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 138 (424)
...... .++++.+.+. +||++|+- .+..+..+|..+|+|+|.+.-+
T Consensus 67 ~~~~R~----~~l~~~~~~~---~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 67 ESIERQ----YKLLKLIKKF---KPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHH----HHHHHHHHhh---CCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 222222 2334444333 99999975 5577888999999999998554
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.77 E-value=3.6e-06 Score=80.70 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=51.0
Q ss_pred CCeEEecccch-hhhhccccceeeec----ccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCc
Q 036740 338 EKGMIVPWCSQ-VEVLSHEAVGCFVT----HCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 412 (424)
Q Consensus 338 ~n~~v~~~~pq-~~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 412 (424)
+++.+.++.++ .++++.+++ +|. -|...++.||+++|+|+|+... ...+..+++ -..|...+..
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~-~~~G~~~~~~---- 321 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKH-GETGFLVDVG---- 321 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcC-CCceEEcCCC----
Confidence 57888888876 568888888 662 2334599999999999998543 445666665 5677766643
Q ss_pred cchHHHHHhh
Q 036740 413 VESDEINRCL 422 (424)
Q Consensus 413 ~~~~~l~~ai 422 (424)
+.+++++++
T Consensus 322 -~~~~l~~~i 330 (371)
T cd04962 322 -DVEAMAEYA 330 (371)
T ss_pred -CHHHHHHHH
Confidence 455666554
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.77 E-value=8.5e-06 Score=79.50 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=70.9
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhcC--CCEEEEEecCCCCCccCCCCchhHHHHHHHHh-CCCeEEecccchhh---
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLDSG--HPFLWVSRESDNKDKDKDKGEDDVMMKYKEEL-NEKGMIVPWCSQVE--- 350 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~n~~v~~~~pq~~--- 350 (424)
.+++..|++. ....+..++++++... .++.+.+-+. +.. ...+ ....+.. .+|+.+.+|+|+.+
T Consensus 230 ~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~-g~~--~~~l-----~~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 230 KIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVICGQ-GGG--KARL-----EKMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred EEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEEECC-Chh--HHHH-----HHHHHHcCCCceEEeCCCCHHHHHH
Confidence 4555678876 2334566666665432 1233333332 211 0011 1122111 25888889999754
Q ss_pred hhccccceeeecccCh------hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 351 VLSHEAVGCFVTHCGW------SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 351 lL~~~~~~~~I~HgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+++.+++.++.+..+. +.+.|++++|+|+|+....+.. .+. +.+ +.|+.++.. +.++++++|.
T Consensus 300 ~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~-~i~--~~G~~~~~~-----d~~~la~~i~ 368 (412)
T PRK10307 300 LLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQ-LVE--GIGVCVEPE-----SVEALVAAIA 368 (412)
T ss_pred HHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHH-HHh--CCcEEeCCC-----CHHHHHHHHH
Confidence 6888888555555332 2468999999999998654311 111 222 567777653 6677777764
No 58
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.76 E-value=1.3e-05 Score=75.86 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=56.3
Q ss_pred hCCCeEEecccchh---hhhccccceeeec----ccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeec
Q 036740 336 LNEKGMIVPWCSQV---EVLSHEAVGCFVT----HCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 336 ~~~n~~v~~~~pq~---~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
..+++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+... ...+..+.+ .+.|...+..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~~ 326 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPPG 326 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCCC
Confidence 35789999999754 46788888 663 3556799999999999998765 456667775 6788877743
Q ss_pred CCCccchHHHHHhhh
Q 036740 409 EEGIVESDEINRCLE 423 (424)
Q Consensus 409 ~~~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 327 -----~~~~l~~~i~ 336 (374)
T cd03801 327 -----DPEALAEAIL 336 (374)
T ss_pred -----CHHHHHHHHH
Confidence 4677776654
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.73 E-value=3.3e-05 Score=75.17 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=52.7
Q ss_pred CCeEEecccchh---hhhccccceeeec---ccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCC
Q 036740 338 EKGMIVPWCSQV---EVLSHEAVGCFVT---HCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 410 (424)
Q Consensus 338 ~n~~v~~~~pq~---~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 410 (424)
+++.+.+++++. ++++.+++ +|. +.|. .++.||+++|+|+|+.... .....+.+ .+.|..++..
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~~-- 353 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GETGLLVDGH-- 353 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CCceEECCCC--
Confidence 689999999874 46888888 663 2343 5899999999999986543 34455665 6678777643
Q ss_pred CccchHHHHHhhh
Q 036740 411 GIVESDEINRCLE 423 (424)
Q Consensus 411 ~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 354 ---d~~~la~~i~ 363 (405)
T TIGR03449 354 ---DPADWADALA 363 (405)
T ss_pred ---CHHHHHHHHH
Confidence 5666666654
No 60
>PLN02275 transferase, transferring glycosyl groups
Probab=98.72 E-value=4.2e-05 Score=73.51 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCeEEe-cccchhhh---hccccceeeec-c-----cC-hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEee
Q 036740 338 EKGMIV-PWCSQVEV---LSHEAVGCFVT-H-----CG-WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 338 ~n~~v~-~~~pq~~l---L~~~~~~~~I~-H-----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
+|+.+. .|+|+.++ ++.+++ +|. + -| -+++.||+++|+|+|+... ..+...+++ -+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKD-GKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccC-CCCeEEEC
Confidence 566665 47888654 888888 663 1 12 3579999999999999653 336677776 67898875
Q ss_pred ecCCCccchHHHHHhhh
Q 036740 407 ANEEGIVESDEINRCLE 423 (424)
Q Consensus 407 ~~~~~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 359 -------~~~~la~~i~ 368 (371)
T PLN02275 359 -------SSSELADQLL 368 (371)
T ss_pred -------CHHHHHHHHH
Confidence 3677888775
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.72 E-value=9.5e-06 Score=77.40 Aligned_cols=76 Identities=24% Similarity=0.226 Sum_probs=51.4
Q ss_pred hCCCeEEecccc-hh---hhhccccceeeeccc----ChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeee
Q 036740 336 LNEKGMIVPWCS-QV---EVLSHEAVGCFVTHC----GWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKA 407 (424)
Q Consensus 336 ~~~n~~v~~~~p-q~---~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 407 (424)
...++.+.+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+.... .....+.+ .+.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~-~~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDH-GVTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeC-CCceEEeCC
Confidence 346788889999 43 46888888 77743 357999999999999976532 33344554 456766663
Q ss_pred cCCCccchHHHHHhhh
Q 036740 408 NEEGIVESDEINRCLE 423 (424)
Q Consensus 408 ~~~~~~~~~~l~~ai~ 423 (424)
.+.+++++++.
T Consensus 315 -----~~~~~~~~~l~ 325 (365)
T cd03825 315 -----GDPEDLAEGIE 325 (365)
T ss_pred -----CCHHHHHHHHH
Confidence 35566666553
No 62
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.70 E-value=4.1e-05 Score=74.26 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCeEEecccchhh---hhccccceeeec---ccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCC
Q 036740 338 EKGMIVPWCSQVE---VLSHEAVGCFVT---HCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 410 (424)
Q Consensus 338 ~n~~v~~~~pq~~---lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 410 (424)
+++.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+.. .......+.+ -..|..++..
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~-~~~G~lv~~~-- 351 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITD-GENGLLVDFF-- 351 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhccc-CCceEEcCCC--
Confidence 6888899999865 5677888 553 2333 48999999999999864 3455666665 5678877753
Q ss_pred CccchHHHHHhhh
Q 036740 411 GIVESDEINRCLE 423 (424)
Q Consensus 411 ~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 352 ---d~~~la~~i~ 361 (396)
T cd03818 352 ---DPDALAAAVI 361 (396)
T ss_pred ---CHHHHHHHHH
Confidence 6777877764
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.70 E-value=2.1e-05 Score=74.72 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=76.1
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHH--HHhCCCeEEecccchh---hh
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYK--EELNEKGMIVPWCSQV---EV 351 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~n~~v~~~~pq~---~l 351 (424)
.+++..|++. .......++++++... ++.+.+.+. +.. . +.+.... ....+|+.+.+|+|+. .+
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~-~~~l~i~G~-g~~------~-~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALP-DAPLVIVGE-GPL------E-AELEALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhcc-CcEEEEEeC-Chh------H-HHHHHHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 4666778765 3345667778887766 443333332 211 1 0001111 1224789999999975 47
Q ss_pred hccccceeeec---ccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 352 LSHEAVGCFVT---HCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 352 L~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
++.+++.++-+ +.|. .++.||+++|+|+|+......+..... + .+.|...+.. +.++++++|.
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~~-----d~~~~~~~i~ 327 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPPG-----DPAALAEAIR 327 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCCC-----CHHHHHHHHH
Confidence 77788843333 2344 479999999999999765554433322 3 4677777643 6777777664
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.69 E-value=2.4e-05 Score=74.23 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=75.1
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHhc---CCCEEEEEecCCCCCccCCCCchhHHHHHHH--HhCCCeEEecccchh-
Q 036740 276 SVIYVAFGTICVLEKRQVEEIARGLLDS---GHPFLWVSRESDNKDKDKDKGEDDVMMKYKE--ELNEKGMIVPWCSQV- 349 (424)
Q Consensus 276 ~vvyvs~GS~~~~~~~~~~~~~~~l~~~---~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~--~~~~n~~v~~~~pq~- 349 (424)
..+++..|++.. ...+..++++++.. +..+.+.+.+. +.. ...+ ....+ ...+|+.+.+++++.
T Consensus 202 ~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~-~~~--~~~~-----~~~~~~~~~~~~v~~~g~~~~~~ 271 (377)
T cd03798 202 KKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGD-GPL--REAL-----EALAAELGLEDRVTFLGAVPHEE 271 (377)
T ss_pred ceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcC-Ccc--hHHH-----HHHHHhcCCcceEEEeCCCCHHH
Confidence 356677787663 23345555555543 23444444433 221 0011 11111 124689999999975
Q ss_pred --hhhccccceeeec----ccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 350 --EVLSHEAVGCFVT----HCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 350 --~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
.++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+.+ .+.|...+.. +.++++++|.
T Consensus 272 ~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~~~-----~~~~l~~~i~ 339 (377)
T cd03798 272 VPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVPPG-----DPEALAEAIL 339 (377)
T ss_pred HHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEECCC-----CHHHHHHHHH
Confidence 46777888 652 35567899999999999986543 45566776 6777777753 6666666654
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.67 E-value=4.4e-05 Score=73.83 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=50.4
Q ss_pred CCCeEEecccchh---hhhccccceeeecc---cC-hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecC
Q 036740 337 NEKGMIVPWCSQV---EVLSHEAVGCFVTH---CG-WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE 409 (424)
Q Consensus 337 ~~n~~v~~~~pq~---~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 409 (424)
.+|+.+.+++|+. .++..+++ ++.. -| ..++.||+++|+|+|+.-.. .....+.+ -+.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~-~~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVD-GETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhcc-CCceEEeCC--
Confidence 4789999999986 46788888 6632 22 25789999999999987443 33445665 566776652
Q ss_pred CCccchHHHHHhhh
Q 036740 410 EGIVESDEINRCLE 423 (424)
Q Consensus 410 ~~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 350 ----~~~~~a~~i~ 359 (392)
T cd03805 350 ----TPEEFAEAML 359 (392)
T ss_pred ----CHHHHHHHHH
Confidence 4566665553
No 66
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.67 E-value=5.6e-06 Score=79.41 Aligned_cols=123 Identities=12% Similarity=0.174 Sum_probs=72.0
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHHhc-----CCCEEEEEecCCCCCccCCCCchhHHHHHHHHh--CCCeEEecccc
Q 036740 275 SSVIYVAFGTICVLEKRQVEEIARGLLDS-----GHPFLWVSRESDNKDKDKDKGEDDVMMKYKEEL--NEKGMIVPWCS 347 (424)
Q Consensus 275 ~~vvyvs~GS~~~~~~~~~~~~~~~l~~~-----~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~--~~n~~v~~~~p 347 (424)
+.+|+++++-.... ...+..+++++... +.++++..... . ... ..+.+.. .+|+.+.+.++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~---~----~~~----~~~~~~~~~~~~v~~~~~~~ 264 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLN---P----VVR----EPLHKHLGDSKRVHLIEPLE 264 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCC---h----HHH----HHHHHHhCCCCCEEEECCCC
Confidence 34666654432211 13466777777653 34455543221 1 111 2222222 36888887777
Q ss_pred hh---hhhccccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 348 QV---EVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 348 q~---~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+. .+++.+++ +|+-.|.. +.||+++|+|+|.++...+++. +.+ .|.+..+.. +.++|++++.
T Consensus 265 ~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~~------d~~~i~~ai~ 329 (365)
T TIGR00236 265 YLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVGT------DKENITKAAK 329 (365)
T ss_pred hHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeCC------CHHHHHHHHH
Confidence 64 45677777 99987654 7999999999999876555542 344 577765532 5666666654
No 67
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.61 E-value=5.6e-05 Score=79.49 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCC---------------ccChHHHHHHHHHHHhCC--CEEEEEECccchhh--------hcCCC------
Q 036740 5 QQPHFLLLTFPI---------------QGHINPSLQFARRLTRIG--TRVTFAIAISAYRR--------MANNP------ 53 (424)
Q Consensus 5 ~~~~il~~~~~~---------------~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~--------i~~~~------ 53 (424)
++|.|++++.-+ .|+..-.+.||++|+++| |+|.++|-....+. ++...
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 678888876532 256777899999999998 89999995432211 10000
Q ss_pred -----CCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCeeEEEeCCCc--hhHH
Q 036740 54 -----TPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELI----TASQNEGGQPFTCLVYPQLL--PWAA 122 (424)
Q Consensus 54 -----~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~l~~~~~~~~D~vv~D~~~--~~~~ 122 (424)
....|+..+.+|-+-.......... ..++..|...+...+.++. +++...+...||+|-+.+.. ..+.
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L-~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEEL-WPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAA 326 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHH
Confidence 0115788777776533223333344 5566666666555544332 22211112259999988544 4578
Q ss_pred HHHHHcCCCcEEEech
Q 036740 123 EVARAYHLPSALLWLQ 138 (424)
Q Consensus 123 ~~A~~lgiP~v~~~~~ 138 (424)
.+++.+|||+|....+
T Consensus 327 ~L~~~lgVP~V~T~HS 342 (1050)
T TIGR02468 327 LLSGALNVPMVLTGHS 342 (1050)
T ss_pred HHHHhhCCCEEEECcc
Confidence 8899999998886443
No 68
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.58 E-value=1.1e-05 Score=76.11 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=71.0
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHH--hCCCeEEecccchhh---hh
Q 036740 278 IYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEE--LNEKGMIVPWCSQVE---VL 352 (424)
Q Consensus 278 vyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~--~~~n~~v~~~~pq~~---lL 352 (424)
+.+..|... .......++++++..+.++++.-.+. ..+ .+. ....+. ..+++.+.+++++.+ ++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~-~~~----~~~----~~~~~~~~~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS-DPD----YFY----REIAPELLDGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC-CHH----HHH----HHHHHhcccCCcEEEeCCCCHHHHHHHH
Confidence 444557764 33345667778877777766543322 111 111 111112 257899999999854 57
Q ss_pred ccccceeeec--ccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 353 SHEAVGCFVT--HCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 353 ~~~~~~~~I~--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+.+++-++-+ +-|. .++.||+++|+|+|+.... .+...+.+ ...|...+ . .++++++++
T Consensus 242 ~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~-~~~g~l~~-----~--~~~l~~~l~ 303 (335)
T cd03802 242 GNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVED-GVTGFLVD-----S--VEELAAAVA 303 (335)
T ss_pred HhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeC-CCcEEEeC-----C--HHHHHHHHH
Confidence 7888833333 2344 5899999999999987643 33344443 33566554 1 555555543
No 69
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.57 E-value=0.00015 Score=68.80 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=52.5
Q ss_pred CCCeEEecccchhh---hhccccceeeec----------ccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhccee
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVT----------HCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGV 403 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~----------HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 403 (424)
.+|+.+.+++|+.+ +++.+++ +|. -|.-+++.||+++|+|+|+.+.. .....+++ ...|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~-~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVED-GETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhC-CCceE
Confidence 47899999998654 6677888 555 23347899999999999986643 23345555 44787
Q ss_pred EeeecCCCccchHHHHHhhh
Q 036740 404 RVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 404 ~l~~~~~~~~~~~~l~~ai~ 423 (424)
..+.. +.++++++|.
T Consensus 308 ~~~~~-----~~~~l~~~i~ 322 (355)
T cd03799 308 LVPPG-----DPEALADAIE 322 (355)
T ss_pred EeCCC-----CHHHHHHHHH
Confidence 77643 6677776664
No 70
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.56 E-value=6.9e-05 Score=72.75 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCeEEecccchhh---hhccccceeeec---ccChh-HHHHHHhcCCcEeecccc
Q 036740 338 EKGMIVPWCSQVE---VLSHEAVGCFVT---HCGWS-SSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 338 ~n~~v~~~~pq~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~ 385 (424)
+++.+.+|+|+.+ +++.+++ +|. +-|.| ++.||+++|+|+|+....
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~g 302 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVG 302 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCC
Confidence 5688889998644 6778888 654 33443 999999999999997754
No 71
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.55 E-value=0.00023 Score=70.08 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=52.2
Q ss_pred CCCeEEecccchhhh---hccc----cceeeeccc---C-hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEe
Q 036740 337 NEKGMIVPWCSQVEV---LSHE----AVGCFVTHC---G-WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRV 405 (424)
Q Consensus 337 ~~n~~v~~~~pq~~l---L~~~----~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l 405 (424)
.+++.+.+++++.++ ++.+ ++ ||... | ..++.||+++|+|+|+.... .+...+.+ ...|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~-~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIAN-CRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcC-CCcEEEe
Confidence 467888888887664 5544 45 87654 4 35999999999999987643 34555565 5578877
Q ss_pred eecCCCccchHHHHHhhh
Q 036740 406 KANEEGIVESDEINRCLE 423 (424)
Q Consensus 406 ~~~~~~~~~~~~l~~ai~ 423 (424)
++. +.++++++|.
T Consensus 389 ~~~-----d~~~la~~i~ 401 (439)
T TIGR02472 389 DVL-----DLEAIASALE 401 (439)
T ss_pred CCC-----CHHHHHHHHH
Confidence 754 6677777664
No 72
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.55 E-value=3.8e-05 Score=72.23 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=48.5
Q ss_pred CCCeEEecccch-hhhhccccceeeecc----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeec
Q 036740 337 NEKGMIVPWCSQ-VEVLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 337 ~~n~~v~~~~pq-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
.+++.+.++.++ .++++.+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~ 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLVPVG 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEECCC
Confidence 367888888876 468888888 6632 3356899999999999985443 56677887 7888888754
No 73
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.53 E-value=5.6e-05 Score=72.21 Aligned_cols=100 Identities=12% Similarity=0.218 Sum_probs=65.0
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHh--CCCeEEecccch
Q 036740 274 KSSVIYVAFGTIC---VLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEEL--NEKGMIVPWCSQ 348 (424)
Q Consensus 274 ~~~vvyvs~GS~~---~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~--~~n~~v~~~~pq 348 (424)
+++.|+|++=-.. ....+.+..+++++...+.++++..... ... ...+. +...+.. .+|+.+.+.+++
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~-~p~--~~~i~----~~i~~~~~~~~~v~l~~~l~~ 272 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNA-DAG--SRIIN----EAIEEYVNEHPNFRLFKSLGQ 272 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCC-CCC--chHHH----HHHHHHhcCCCCEEEECCCCh
Confidence 3458888875432 2345678999999988776666665433 111 00111 2222222 368988876665
Q ss_pred ---hhhhccccceeeecccChhHHHHHHhcCCcEeecc
Q 036740 349 ---VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFP 383 (424)
Q Consensus 349 ---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P 383 (424)
..+++++++ +|+-++.|- .||.+.|||.|.+-
T Consensus 273 ~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 273 ERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG 307 (365)
T ss_pred HHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec
Confidence 557889999 998876655 99999999999764
No 74
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.51 E-value=0.00011 Score=68.91 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=49.8
Q ss_pred CCeEEecccch-hhhhccccceeeecccC----hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhc-ceeEeeecCCC
Q 036740 338 EKGMIVPWCSQ-VEVLSHEAVGCFVTHCG----WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCK-TGVRVKANEEG 411 (424)
Q Consensus 338 ~n~~v~~~~pq-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~ 411 (424)
+++.+.++... ..++..+++ +|.-.. .+++.||+++|+|+|+.+....+ ..+.+ .| .|...+..
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~-~~~~g~~~~~~--- 304 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIE-DGVNGLLVPNG--- 304 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhc-cCcceEEeCCC---
Confidence 56777777443 558888888 665542 47899999999999987644332 23444 45 78877743
Q ss_pred ccchHHHHHhhh
Q 036740 412 IVESDEINRCLE 423 (424)
Q Consensus 412 ~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 305 --~~~~~~~~i~ 314 (348)
T cd03820 305 --DVEALAEALL 314 (348)
T ss_pred --CHHHHHHHHH
Confidence 5677777664
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.50 E-value=0.00016 Score=68.75 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=52.9
Q ss_pred CCCeEEecccch-hhhhccccceeeec--ccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCc
Q 036740 337 NEKGMIVPWCSQ-VEVLSHEAVGCFVT--HCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 412 (424)
Q Consensus 337 ~~n~~v~~~~pq-~~lL~~~~~~~~I~--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 412 (424)
.+++.+.++.+. ..+++.+++-++-+ +-|. +++.||+++|+|+|+.-. ..+...+.+ .+.|..++..
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~-~~~g~~~~~~---- 315 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRP-GETGLLVPPG---- 315 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhC-CCceEEeCCC----
Confidence 367888888554 55888899844333 2333 599999999999998653 334556665 5678887743
Q ss_pred cchHHHHHhh
Q 036740 413 VESDEINRCL 422 (424)
Q Consensus 413 ~~~~~l~~ai 422 (424)
+.++++++|
T Consensus 316 -~~~~l~~~i 324 (355)
T cd03819 316 -DAEALAQAL 324 (355)
T ss_pred -CHHHHHHHH
Confidence 677777766
No 76
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.50 E-value=0.00011 Score=69.71 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=49.0
Q ss_pred CCCeEEecccchhh---hhccccceeeeccc---C-hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecC
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVTHC---G-WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE 409 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 409 (424)
.+++.+.+|+++.+ ++..+++ +|.-. | ..++.||+++|+|+|+.+.. .....+.+ +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--
Confidence 47888899999654 5778888 55432 2 46899999999999997643 33444442 66766653
Q ss_pred CCccchHHHHHhhh
Q 036740 410 EGIVESDEINRCLE 423 (424)
Q Consensus 410 ~~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 331 ----~~~~~~~~i~ 340 (375)
T cd03821 331 ----DVDALAAALR 340 (375)
T ss_pred ----ChHHHHHHHH
Confidence 2366666654
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.47 E-value=5.3e-05 Score=72.48 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=55.6
Q ss_pred CCCeEEecccchhh---hhccccceeeecc----------cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhccee
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVTH----------CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGV 403 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~H----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 403 (424)
.+++.+.+++|+.+ +++.+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+ .+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCeeE
Confidence 57888889998755 5788888 6532 2357899999999999987654 36667776 78888
Q ss_pred EeeecCCCccchHHHHHhhh
Q 036740 404 RVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 404 ~l~~~~~~~~~~~~l~~ai~ 423 (424)
.++.. +.++++++|.
T Consensus 317 ~~~~~-----d~~~l~~~i~ 331 (367)
T cd05844 317 LVPEG-----DVAALAAALG 331 (367)
T ss_pred EECCC-----CHHHHHHHHH
Confidence 88743 5677777664
No 78
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.43 E-value=1.9e-06 Score=67.96 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=81.6
Q ss_pred eEEEEecccccCC---HHHHHHHHHHHHhcCC-CEEEEEecCCCCCccCCCCchhHHHHHHHH-hCCCeEE--ecccch-
Q 036740 277 VIYVAFGTICVLE---KRQVEEIARGLLDSGH-PFLWVSRESDNKDKDKDKGEDDVMMKYKEE-LNEKGMI--VPWCSQ- 348 (424)
Q Consensus 277 vvyvs~GS~~~~~---~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~-~~~n~~v--~~~~pq- 348 (424)
.+||+-||....+ .-.-++.++.|.+.|. +.|..++.+ .. .-+ +...+. ......+ .+|-|-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg-~~-----~~~----d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRG-QP-----FFG----DPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCC-cc-----CCC----CHHHhhcccCCeEEEEEecCccH
Confidence 6999999877321 1113457777888886 466666654 21 112 111111 1233333 488886
Q ss_pred hhhhccccceeeecccChhHHHHHHhcCCcEeecccc----cchhHHHHHHHhhhcceeEeeec
Q 036740 349 VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW----TDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 349 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~----~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
.+....+++ +|.|+|.||++|.|..|+|.|+++-- ..|-.-|..+++ .|.=..=.+.
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~ps 135 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTPS 135 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeecc
Confidence 566667888 99999999999999999999999963 479999999998 8877665554
No 79
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.43 E-value=0.00014 Score=69.19 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=51.3
Q ss_pred CCCeEEe-cccchh---hhhccccceeeec--c----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEee
Q 036740 337 NEKGMIV-PWCSQV---EVLSHEAVGCFVT--H----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 337 ~~n~~v~-~~~pq~---~lL~~~~~~~~I~--H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
.+|+.+. +|+|+. .+++.+++ +|. + |..+++.||+++|+|+|+.+..+ ...+.+ .+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEc
Confidence 4688888 558864 47777888 662 2 33568999999999999977543 344555 67777776
Q ss_pred ecCCCccchHHHHHhhh
Q 036740 407 ANEEGIVESDEINRCLE 423 (424)
Q Consensus 407 ~~~~~~~~~~~l~~ai~ 423 (424)
.. +.+++++++.
T Consensus 318 ~~-----d~~~~~~~l~ 329 (366)
T cd03822 318 PG-----DPAALAEAIR 329 (366)
T ss_pred CC-----CHHHHHHHHH
Confidence 43 5666776664
No 80
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.42 E-value=6.2e-05 Score=73.77 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=51.9
Q ss_pred CeEEecccch-hhhhccccceeeecc-----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCc
Q 036740 339 KGMIVPWCSQ-VEVLSHEAVGCFVTH-----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 412 (424)
Q Consensus 339 n~~v~~~~pq-~~lL~~~~~~~~I~H-----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 412 (424)
++.+.+...+ ..+++.+++ ++.. +|..++.||+++|+|+|+-|...++......+.+ .|+++...
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~~------ 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQVE------ 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEEC------
Confidence 3444444433 457778887 4432 3444699999999999999998888888888877 78776643
Q ss_pred cchHHHHHhhh
Q 036740 413 VESDEINRCLE 423 (424)
Q Consensus 413 ~~~~~l~~ai~ 423 (424)
+.++|+++|.
T Consensus 374 -d~~~La~~l~ 383 (425)
T PRK05749 374 -DAEDLAKAVT 383 (425)
T ss_pred -CHHHHHHHHH
Confidence 4566666553
No 81
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.42 E-value=0.00027 Score=72.72 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=69.4
Q ss_pred CeEEEEcCCC-------------ccChHHHHHHHHH--------HHhCCC----EEEEEECccch-------hhhcCCCC
Q 036740 7 PHFLLLTFPI-------------QGHINPSLQFARR--------LTRIGT----RVTFAIAISAY-------RRMANNPT 54 (424)
Q Consensus 7 ~~il~~~~~~-------------~GH~~p~l~La~~--------L~~rGh----~Vt~~~~~~~~-------~~i~~~~~ 54 (424)
|||++++.-+ .|+..-.+.+|++ |+++|| +|+++|-.... ..++....
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~ 335 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYG 335 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccC
Confidence 7888877644 5777778888887 568999 77788843211 11111111
Q ss_pred CCCCceEEEcCCCCCCC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc--hhHHHHHHH
Q 036740 55 PEDGLSFASFSDGYDDG-----FNSKQNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLL--PWAAEVARA 127 (424)
Q Consensus 55 ~~~gi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~--~~~~~~A~~ 127 (424)
..|++.+.+|-+-... ..+..+. +.++..|...+ .+.+..+. ..+||+|++.+.. ..+..++++
T Consensus 336 -~~~~~I~rvp~g~~~~~~~~~~i~k~~l-~p~l~~f~~~~---~~~~~~~~----~~~pDlIHahy~d~glva~lla~~ 406 (784)
T TIGR02470 336 -TEHAWILRVPFRTENGIILRNWISRFEI-WPYLETFAEDA---EKEILAEL----QGKPDLIIGNYSDGNLVASLLARK 406 (784)
T ss_pred -CCceEEEEecCCCCcccccccccCHHHH-HHHHHHHHHHH---HHHHHHhc----CCCCCEEEECCCchHHHHHHHHHh
Confidence 1577777776443221 1111222 33333333332 22222221 2489999987544 457899999
Q ss_pred cCCCcEEEe
Q 036740 128 YHLPSALLW 136 (424)
Q Consensus 128 lgiP~v~~~ 136 (424)
+|||.+.+.
T Consensus 407 lgVP~v~t~ 415 (784)
T TIGR02470 407 LGVTQCTIA 415 (784)
T ss_pred cCCCEEEEC
Confidence 999988753
No 82
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.41 E-value=8.3e-05 Score=69.90 Aligned_cols=130 Identities=15% Similarity=0.014 Sum_probs=78.3
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHhcCCC-EEEEEecCCCCCccCCCCchhHHHHHHHHhC--CCeEEecccchhhhh
Q 036740 276 SVIYVAFGTICVLEKRQVEEIARGLLDSGHP-FLWVSRESDNKDKDKDKGEDDVMMKYKEELN--EKGMIVPWCSQVEVL 352 (424)
Q Consensus 276 ~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~-~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~--~n~~v~~~~pq~~lL 352 (424)
++|.+--||-.+--...+..++++......+ .++.+... ... +.+.+... ..+.+.+ .-.+++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a-~~~-----------~~i~~~~~~~~~~~~~~--~~~~~m 233 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF-FKG-----------KDLKEIYGDISEFEISY--DTHKAL 233 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC-CcH-----------HHHHHHHhcCCCcEEec--cHHHHH
Confidence 5788888886632223344444555543221 33333332 111 22222221 1333332 235688
Q ss_pred ccccceeeecccChhHHHHHHhcCCcEeeccc--ccchhHHHHHHHh--hhcceeEeee----cC------CCccchHHH
Q 036740 353 SHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQ--WTDQGTNAKIIVD--FCKTGVRVKA----NE------EGIVESDEI 418 (424)
Q Consensus 353 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~--~~G~G~~l~~----~~------~~~~~~~~l 418 (424)
..+++ +|+-+|..|+ |+...|+|||+ +. ..=|+.||+++.+ +.|..-.+.. .+ ++..|++.|
T Consensus 234 ~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~l 309 (347)
T PRK14089 234 LEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENL 309 (347)
T ss_pred HhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHH
Confidence 89999 9999999999 99999999998 44 3479999999993 1555544421 00 347888888
Q ss_pred HHhhh
Q 036740 419 NRCLE 423 (424)
Q Consensus 419 ~~ai~ 423 (424)
.+++.
T Consensus 310 a~~i~ 314 (347)
T PRK14089 310 LKAYK 314 (347)
T ss_pred HHHHH
Confidence 88764
No 83
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.40 E-value=4e-05 Score=72.96 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCeEEecccch-hhhhccccceeeeccc----ChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCc
Q 036740 338 EKGMIVPWCSQ-VEVLSHEAVGCFVTHC----GWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 412 (424)
Q Consensus 338 ~n~~v~~~~pq-~~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 412 (424)
+|+.+.++..+ ..+++.+++ +|.-. ..+++.||+++|+|+|+. |...+...+++ .|.. ....
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~--~~~~---- 311 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLI--VPIS---- 311 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceE--eCCC----
Confidence 67888887765 568888888 55432 257899999999999974 44555666664 4443 3322
Q ss_pred cchHHHHHhhh
Q 036740 413 VESDEINRCLE 423 (424)
Q Consensus 413 ~~~~~l~~ai~ 423 (424)
+.+++++++.
T Consensus 312 -~~~~~~~~i~ 321 (360)
T cd04951 312 -DPEALANKID 321 (360)
T ss_pred -CHHHHHHHHH
Confidence 5556666553
No 84
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.38 E-value=0.00012 Score=70.06 Aligned_cols=127 Identities=18% Similarity=0.231 Sum_probs=73.7
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHH--hCCCeEEecccch--hh--
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEE--LNEKGMIVPWCSQ--VE-- 350 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~--~~~n~~v~~~~pq--~~-- 350 (424)
.+++..|.+.......+..+++++......+-+.+-+. +.+ ...+ ....+. +++++.+.+|+++ ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~-g~~--~~~l-----~~~~~~~~l~~~v~f~G~~~~~~~~~~ 252 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGD-GSD--FEKC-----KAYSRELGIEQRIIWHGWQSQPWEVVQ 252 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeC-Ccc--HHHH-----HHHHHHcCCCCeEEEecccCCcHHHHH
Confidence 45566777653233446677777776543433333222 211 0011 222222 2468999999854 22
Q ss_pred -hhccccceeeecc----cChhHHHHHHhcCCcEeecc-cccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 351 -VLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFP-QWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 351 -lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P-~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
.++.+++ +|.. |-..++.||+++|+|+|+.- ..+ ....+++ -..|..++.. +.++++++|.
T Consensus 253 ~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~-~~~G~lv~~~-----d~~~la~~i~ 319 (359)
T PRK09922 253 QKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKP-GLNGELYTPG-----NIDEFVGKLN 319 (359)
T ss_pred HHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccC-CCceEEECCC-----CHHHHHHHHH
Confidence 3445677 6643 33579999999999999875 332 2245555 5668777643 7788888775
No 85
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.33 E-value=0.00094 Score=63.50 Aligned_cols=74 Identities=14% Similarity=0.041 Sum_probs=50.6
Q ss_pred CCCeEEecccch-hhhhccccceeeecc----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCC
Q 036740 337 NEKGMIVPWCSQ-VEVLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEG 411 (424)
Q Consensus 337 ~~n~~v~~~~pq-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 411 (424)
.+++.+.++..+ .+++..+++ +|+- |-..++.||+++|+|+|+....+ ....+.+ +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC----
Confidence 367888887555 568888888 6643 44579999999999999866543 3344553 55555543
Q ss_pred ccchHHHHHhhh
Q 036740 412 IVESDEINRCLE 423 (424)
Q Consensus 412 ~~~~~~l~~ai~ 423 (424)
-+.++++++|.
T Consensus 316 -~~~~~~a~~i~ 326 (358)
T cd03812 316 -ESPEIWAEEIL 326 (358)
T ss_pred -CCHHHHHHHHH
Confidence 24677777764
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.31 E-value=0.00017 Score=70.31 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=33.2
Q ss_pred CCCeEEEEcCC----CccChHHHHHHHHHHHhCC-CEEEEEECcc
Q 036740 5 QQPHFLLLTFP----IQGHINPSLQFARRLTRIG-TRVTFAIAIS 44 (424)
Q Consensus 5 ~~~~il~~~~~----~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~ 44 (424)
++|||++++.- ..|=....+.++..|+++| |+|+++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 77999999873 3477677888888999999 8999999753
No 87
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.25 E-value=0.0012 Score=62.43 Aligned_cols=72 Identities=29% Similarity=0.398 Sum_probs=47.8
Q ss_pred CCeEEecccch-hhhhccccceeeecccC----hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCc
Q 036740 338 EKGMIVPWCSQ-VEVLSHEAVGCFVTHCG----WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 412 (424)
Q Consensus 338 ~n~~v~~~~pq-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 412 (424)
+++.+.+...+ ..+++.+++ +|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..++..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~~---- 317 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPPG---- 317 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCCC----
Confidence 56777665554 568888998 776544 379999999999999854 3445555553 45555532
Q ss_pred cchHHHHHhhh
Q 036740 413 VESDEINRCLE 423 (424)
Q Consensus 413 ~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 318 -~~~~l~~~i~ 327 (365)
T cd03807 318 -DPEALAEAIE 327 (365)
T ss_pred -CHHHHHHHHH
Confidence 4566666553
No 88
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.22 E-value=0.00062 Score=64.83 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=55.2
Q ss_pred EEEecccccCCHHHHHHHHHHHHhcCCCE-EEEEecCCCCCccCCCCchhHHHHHH--HHhCCCeEEecccchhh---hh
Q 036740 279 YVAFGTICVLEKRQVEEIARGLLDSGHPF-LWVSRESDNKDKDKDKGEDDVMMKYK--EELNEKGMIVPWCSQVE---VL 352 (424)
Q Consensus 279 yvs~GS~~~~~~~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~n~~v~~~~pq~~---lL 352 (424)
++..|++.. ...+..+++++.....++ ++.++.+ ...+ .+. .... ....+++.+.+++++.+ ++
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~-~~~~---~~~----~~~~~~~~~~~~V~~~g~~~~~~~~~~~ 265 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNA-DHNT---PYG----KLLKEKAAADPRIIFVGPIYDQELLELL 265 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCC-CCcc---hHH----HHHHHHhCCCCcEEEccccChHHHHHHH
Confidence 345687762 334666777776654232 2333332 1110 111 2221 12347899999999865 55
Q ss_pred ccccceeeecccCh-----hHHHHHHhcCCcEeecccc
Q 036740 353 SHEAVGCFVTHCGW-----SSSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 353 ~~~~~~~~I~HgG~-----gs~~eal~~GvP~v~~P~~ 385 (424)
..+++ ++.+.-. +++.||+++|+|+|+....
T Consensus 266 ~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~ 301 (363)
T cd04955 266 RYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNP 301 (363)
T ss_pred HhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCC
Confidence 56666 5554333 5799999999999987543
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.0076 Score=62.09 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=52.7
Q ss_pred CCCeEEecccch-hhhhccccceeeec---ccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCC
Q 036740 337 NEKGMIVPWCSQ-VEVLSHEAVGCFVT---HCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEG 411 (424)
Q Consensus 337 ~~n~~v~~~~pq-~~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 411 (424)
.+++.+.+|.++ ..+++.+++ ||. +.|. +++.||+++|+|+|+.... .....+.+ -..|+.++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~d-g~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQE-GVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccC-CCCEEEeCCC---
Confidence 378888899886 457888888 664 5564 6889999999999997643 35556665 5568888754
Q ss_pred ccchHHHHHhh
Q 036740 412 IVESDEINRCL 422 (424)
Q Consensus 412 ~~~~~~l~~ai 422 (424)
..+.+++++++
T Consensus 643 d~~~~~La~aL 653 (694)
T PRK15179 643 TVTAPDVAEAL 653 (694)
T ss_pred CCChHHHHHHH
Confidence 33444444443
No 90
>PLN00142 sucrose synthase
Probab=98.14 E-value=0.0013 Score=67.88 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=46.8
Q ss_pred CCeEEec----ccchhhhhc----cccceeeecc---cChh-HHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEe
Q 036740 338 EKGMIVP----WCSQVEVLS----HEAVGCFVTH---CGWS-SSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRV 405 (424)
Q Consensus 338 ~n~~v~~----~~pq~~lL~----~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l 405 (424)
+++.+.+ ..+..++.. .+++ ||.- -|.| ++.||+++|+|+|+... ......|++ -.-|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~d-G~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVD-GVSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcC-CCcEEEe
Confidence 5666554 334445543 2344 7653 4554 89999999999998654 445667776 5678888
Q ss_pred eecCCCccchHHHHHhh
Q 036740 406 KANEEGIVESDEINRCL 422 (424)
Q Consensus 406 ~~~~~~~~~~~~l~~ai 422 (424)
++. +.++++++|
T Consensus 715 ~P~-----D~eaLA~aI 726 (815)
T PLN00142 715 DPY-----HGDEAANKI 726 (815)
T ss_pred CCC-----CHHHHHHHH
Confidence 864 556666554
No 91
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.14 E-value=0.004 Score=60.05 Aligned_cols=114 Identities=20% Similarity=0.240 Sum_probs=66.1
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCCccCCCCchhHHHHHHH---HhC---CCeEEe-cccc
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLDS--GHPFLWVSRESDNKDKDKDKGEDDVMMKYKE---ELN---EKGMIV-PWCS 347 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~---~~~---~n~~v~-~~~p 347 (424)
.+++..|.+.. ...+..++++++.. +..+++..++. ... .+. +.+.+ ... .++... ++++
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~-~~~----~~~----~~~~~~~~~~~~~~~~v~~~~~~~~ 270 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAP-DTP----EVA----EEVRQAVALLDRNRTGIIWINKMLP 270 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCC-CcH----HHH----HHHHHHHHHhccccCceEEecCCCC
Confidence 45555677652 33466677777664 34555444332 211 111 11111 111 235544 7788
Q ss_pred hh---hhhccccceeeecc----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeec
Q 036740 348 QV---EVLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 348 q~---~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
+. .++..+++ +|.= |...++.||+++|+|+|+... ......+++ .+.|..++..
T Consensus 271 ~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~-~~~G~~~~~~ 331 (388)
T TIGR02149 271 KEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVD-GETGFLVPPD 331 (388)
T ss_pred HHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhC-CCceEEcCCC
Confidence 64 46788888 6642 223577999999999998654 346666776 6778888754
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.01 E-value=0.00047 Score=65.48 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=35.9
Q ss_pred hCCCeEEecccchh---hhhccccceeeecc----cChhHHHHHHhcCCcEeeccc
Q 036740 336 LNEKGMIVPWCSQV---EVLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFPQ 384 (424)
Q Consensus 336 ~~~n~~v~~~~pq~---~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~ 384 (424)
..+++.+.+++|+. .+++.+++ +|.- |..+++.||+++|+|+|+...
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 304 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNI 304 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCC
Confidence 44788888999885 46778887 5533 334689999999999998654
No 93
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.01 E-value=0.0041 Score=61.74 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=67.7
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHh---cCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEe-cccch--hh
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLD---SGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIV-PWCSQ--VE 350 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~-~~~pq--~~ 350 (424)
.+++..|.+. +...+..++++++. .+..+++. +.+ .. .+. +....+.+..+.++.+. +|-.+ ..
T Consensus 283 ~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lviv-G~g--~~----~~~-~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 283 PLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLL-GTG--DP----ELE-EAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred cEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEE-ecC--cH----HHH-HHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 4556667765 23345555665554 34555544 332 11 111 00122333445566544 66322 24
Q ss_pred hhccccceeeec---ccChh-HHHHHHhcCCcEeeccccc--chhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 351 VLSHEAVGCFVT---HCGWS-SSLESLVYGVPVVAFPQWT--DQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 351 lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+++.+++ +|. +-|.| +.+||+++|+|.|+.-..+ |.-.+...-.+ .+.|..+++. +.++|+++|.
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv~~~-----d~~~la~~i~ 423 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVFDDF-----NAEDLLRALR 423 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEeCCC-----CHHHHHHHHH
Confidence 6788888 774 34554 7889999999999865322 21111100022 3678777754 5666666653
No 94
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.01 E-value=0.0061 Score=59.32 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=53.8
Q ss_pred CCCeEEecccchhh---hhccccceeeecc---------cCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhccee
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVTH---------CGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGV 403 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~H---------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 403 (424)
.+++.+.+|+|+.+ ++..+++ +|.- -|. .+++||+++|+|+|+.... .....+++ -..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~-~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEA-DKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcC-CCceE
Confidence 36788899999865 6778888 6642 344 5789999999999987543 34455665 55787
Q ss_pred EeeecCCCccchHHHHHhhh
Q 036740 404 RVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 404 ~l~~~~~~~~~~~~l~~ai~ 423 (424)
.++.. +.++++++|.
T Consensus 351 lv~~~-----d~~~la~ai~ 365 (406)
T PRK15427 351 LVPEN-----DAQALAQRLA 365 (406)
T ss_pred EeCCC-----CHHHHHHHHH
Confidence 77754 6777777764
No 95
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.99 E-value=9.7e-05 Score=69.87 Aligned_cols=213 Identities=17% Similarity=0.157 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhhcCCCCeeEEE--eCCCc-hhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCCccccC
Q 036740 91 SEALAELITASQNEGGQPFTCLV--YPQLL-PWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVNDLIEL 167 (424)
Q Consensus 91 ~~~~~~~l~~l~~~~~~~~D~vv--~D~~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 167 (424)
...+.+.++.. +||+|| .|-+. .+++.+|..++||++-+..+.
T Consensus 56 ~~~~~~~~~~~------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGl---------------------------- 101 (346)
T PF02350_consen 56 IIELADVLERE------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGL---------------------------- 101 (346)
T ss_dssp HHHHHHHHHHH------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-------------------------------
T ss_pred HHHHHHHHHhc------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCC----------------------------
Confidence 34445555554 888877 67665 567899999999988763331
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh--cCCeEEeccccCCCC
Q 036740 168 PGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID--KFNMIAIGPLVASAL 245 (424)
Q Consensus 168 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~--~~~~~~vGpl~~~~~ 245 (424)
+..+. . .....+..+..... -+ +..+..+-...+. +.... ..+++.+|....+..
T Consensus 102 ------Rs~d~---------~--~g~~de~~R~~i~~--la--~lhf~~t~~~~~~--L~~~G~~~~rI~~vG~~~~D~l 158 (346)
T PF02350_consen 102 ------RSGDR---------T--EGMPDEINRHAIDK--LA--HLHFAPTEEARER--LLQEGEPPERIFVVGNPGIDAL 158 (346)
T ss_dssp --------S-T---------T--SSTTHHHHHHHHHH--H---SEEEESSHHHHHH--HHHTT--GGGEEE---HHHHHH
T ss_pred ------Ccccc---------C--CCCchhhhhhhhhh--hh--hhhccCCHHHHHH--HHhcCCCCCeEEEEChHHHHHH
Confidence 00000 0 01122333333332 23 6777776554442 22222 346999997655411
Q ss_pred CCCCcccCCCCcCCCChhHH--hhhhcCCCCCceEEEEecccccCC-H---HHHHHHHHHHHhc-CCCEEEEEecCCCCC
Q 036740 246 LDGKEQYGGDLCKNSSKEYY--MEWLSSKPKSSVIYVAFGTICVLE-K---RQVEEIARGLLDS-GHPFLWVSRESDNKD 318 (424)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~vvyvs~GS~~~~~-~---~~~~~~~~~l~~~-~~~~i~~~~~~~~~~ 318 (424)
... . +. ..++. ...+.. .+++.|+|++=...+.. + ..+..++.+|... +.++||.+... +
T Consensus 159 ~~~-~-------~~-~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~---p 225 (346)
T PF02350_consen 159 LQN-K-------EE-IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN---P 225 (346)
T ss_dssp HHH-H-------HT-TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S----H
T ss_pred HHh-H-------HH-HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC---c
Confidence 000 0 00 00111 122222 45668999985444433 3 3455566666665 67788887632 1
Q ss_pred ccCCCCchhHHHHHHHHhCCCeEEecccch---hhhhccccceeeecccChhHHHHHHhcCCcEeec
Q 036740 319 KDKDKGEDDVMMKYKEELNEKGMIVPWCSQ---VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAF 382 (424)
Q Consensus 319 ~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 382 (424)
...+...+.+. .. +|+.++..+++ ..+|+++++ +|+..| |-.-||.+.|||.|.+
T Consensus 226 ----~~~~~i~~~l~-~~-~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 226 ----RGSDIIIEKLK-KY-DNVRLIEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI 283 (346)
T ss_dssp ----HHHHHHHHHHT-T--TTEEEE----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC
T ss_pred ----hHHHHHHHHhc-cc-CCEEEECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe
Confidence 11100001222 22 58999866665 567889999 999999 5555999999999999
No 96
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=6.9e-05 Score=58.23 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=73.0
Q ss_pred EEEEecccccCCHHHHHH--HHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecc--cch-hhhh
Q 036740 278 IYVAFGTICVLEKRQVEE--IARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPW--CSQ-VEVL 352 (424)
Q Consensus 278 vyvs~GS~~~~~~~~~~~--~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~--~pq-~~lL 352 (424)
|||+-||....-...+.. ...-.+.-..++|+..+.+ . ..| +.. .++.+| -+- +.+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~-d------~kp----------vag-l~v~~F~~~~kiQsli 63 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG-D------IKP----------VAG-LRVYGFDKEEKIQSLI 63 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC-C------ccc----------ccc-cEEEeechHHHHHHHh
Confidence 789999985322222211 2222222345788888765 1 222 112 355544 443 4566
Q ss_pred ccccceeeecccChhHHHHHHhcCCcEeeccccc--------chhHHHHHHHhhhcceeEeee
Q 036740 353 SHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT--------DQGTNAKIIVDFCKTGVRVKA 407 (424)
Q Consensus 353 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~rv~~~~G~G~~l~~ 407 (424)
..+++ +|+|+|-||+..++..++|.|++|-.. .|-..|..+.+ .+.=+...+
T Consensus 64 ~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 64 HDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred hcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 66666 999999999999999999999999754 58889999998 888777765
No 97
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.99 E-value=0.0042 Score=59.61 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=50.9
Q ss_pred CCeEEecccch-hhhhccccceeee--cc--cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCc
Q 036740 338 EKGMIVPWCSQ-VEVLSHEAVGCFV--TH--CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 412 (424)
Q Consensus 338 ~n~~v~~~~pq-~~lL~~~~~~~~I--~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 412 (424)
+++.+.++..+ .++++.+++ +| ++ |-..++.||+++|+|+|+.... .+...+++ -..|..++..
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~-~~~g~~~~~~---- 323 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQH-GVTGALVPPG---- 323 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcC-CCceEEeCCC----
Confidence 45666666554 568888998 66 33 4456999999999999996643 35556665 5677777643
Q ss_pred cchHHHHHhhh
Q 036740 413 VESDEINRCLE 423 (424)
Q Consensus 413 ~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 324 -d~~~la~~i~ 333 (374)
T TIGR03088 324 -DAVALARALQ 333 (374)
T ss_pred -CHHHHHHHHH
Confidence 5667776664
No 98
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.82 E-value=0.0043 Score=60.23 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=50.8
Q ss_pred CCCeEEecccch-hhhhccccceeee--cc--cCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCC
Q 036740 337 NEKGMIVPWCSQ-VEVLSHEAVGCFV--TH--CGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 410 (424)
Q Consensus 337 ~~n~~v~~~~pq-~~lL~~~~~~~~I--~H--gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 410 (424)
.+++.+.+++++ ..+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+. ..+. .|.|+.+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~-~~~g~lv~-~-- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDAL-PGAELLVA-A-- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cccc-CCcceEeC-C--
Confidence 368988899997 457888888 65 32 455 4699999999999998854322 1123 46676665 3
Q ss_pred CccchHHHHHhhh
Q 036740 411 GIVESDEINRCLE 423 (424)
Q Consensus 411 ~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 348 ---~~~~la~ai~ 357 (397)
T TIGR03087 348 ---DPADFAAAIL 357 (397)
T ss_pred ---CHHHHHHHHH
Confidence 5677777764
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.81 E-value=0.0067 Score=60.45 Aligned_cols=140 Identities=18% Similarity=0.143 Sum_probs=71.8
Q ss_pred cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHH--hc--CCC
Q 036740 231 KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLL--DS--GHP 306 (424)
Q Consensus 231 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~--~~--~~~ 306 (424)
+.++.|||-.+.+.... .. +.++..+-+.-.+++++|-+=-||-.+-=...+..++++.+ .. +..
T Consensus 380 gv~v~yVGHPL~d~i~~----------~~-~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~ 448 (608)
T PRK01021 380 PLRTVYLGHPLVETISS----------FS-PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQ 448 (608)
T ss_pred CCCeEEECCcHHhhccc----------CC-CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeE
Confidence 66899999444331100 00 22344444444446678888889855322223445666665 32 344
Q ss_pred EEEEEecCCCCCccCCCCchhHHHHHHHHhC-C---CeEEecccchhhhhccccceeeecccChhHHHHHHhcCCcEeec
Q 036740 307 FLWVSRESDNKDKDKDKGEDDVMMKYKEELN-E---KGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAF 382 (424)
Q Consensus 307 ~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~---n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 382 (424)
|++..... ... +.+.+... . ++.+..--...++++.|++ .+.-.|-. +.|+...|+|||++
T Consensus 449 fvvp~a~~--------~~~----~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGTa-TLEaAL~g~PmVV~ 513 (608)
T PRK01021 449 LLVSSANP--------KYD----HLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGTI-VLETALNQTPTIVT 513 (608)
T ss_pred EEEecCch--------hhH----HHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCHH-HHHHHHhCCCEEEE
Confidence 55533221 111 22222221 1 2233311012578888888 78877765 46999999999884
Q ss_pred c-cccchhHHHHHHH
Q 036740 383 P-QWTDQGTNAKIIV 396 (424)
Q Consensus 383 P-~~~DQ~~na~rv~ 396 (424)
= ...=-+..|+++.
T Consensus 514 YK~s~Lty~Iak~Lv 528 (608)
T PRK01021 514 CQLRPFDTFLAKYIF 528 (608)
T ss_pred EecCHHHHHHHHHHH
Confidence 2 2222334455555
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.78 E-value=0.013 Score=57.34 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCCeEEecccchhh---hhccccceeeecc---cCh-hHHHHHHhcCCcEeecccccchhHHHHHHH---hhhcceeEee
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVTH---CGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIV---DFCKTGVRVK 406 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~---~~~G~G~~l~ 406 (424)
.+++.+.+++|+.+ +|..+++ +|+- -|. -++.||+++|+|.|+.-..+. ....++ + -+.|....
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~-g~~G~l~~ 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDG-GPTGFLAS 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCC-CCceEEeC
Confidence 47899999999754 6777888 5532 222 478999999999998653321 112232 3 45666532
Q ss_pred ecCCCccchHHHHHhhh
Q 036740 407 ANEEGIVESDEINRCLE 423 (424)
Q Consensus 407 ~~~~~~~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 378 -------d~~~la~ai~ 387 (419)
T cd03806 378 -------TAEEYAEAIE 387 (419)
T ss_pred -------CHHHHHHHHH
Confidence 5566666654
No 101
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.72 E-value=0.0012 Score=62.70 Aligned_cols=121 Identities=12% Similarity=0.256 Sum_probs=78.7
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhh---hhcc
Q 036740 278 IYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVE---VLSH 354 (424)
Q Consensus 278 vyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~---lL~~ 354 (424)
.++..|++.. ...+..++++++..+.+++++ +.+ .. . +.+.+...+|+.+.+++|+.+ +++.
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~iv-G~g-~~-------~----~~l~~~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVI-GDG-PE-------L----DRLRAKAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEE-ECC-hh-------H----HHHHhhcCCCEEEecCCCHHHHHHHHHh
Confidence 3455677662 344677888888777665543 332 11 1 333335568999999999854 6778
Q ss_pred ccceeeecccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhhh
Q 036740 355 EAVGCFVTHCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 355 ~~~~~~I~HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+++-++-+.-|. .++.||+++|+|+|+....+ ....+++ -+.|..++.. +.++++++|.
T Consensus 262 ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~~-----~~~~la~~i~ 321 (351)
T cd03804 262 ARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEEQ-----TVESLAAAVE 321 (351)
T ss_pred CCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCCC-----CHHHHHHHHH
Confidence 888333344444 35779999999999976433 3445665 5788888754 6677777664
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.62 E-value=0.023 Score=54.53 Aligned_cols=63 Identities=24% Similarity=0.212 Sum_probs=41.6
Q ss_pred CCCeEEeccc--chh---hhhccccceeeeccc---C-hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEee
Q 036740 337 NEKGMIVPWC--SQV---EVLSHEAVGCFVTHC---G-WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 337 ~~n~~v~~~~--pq~---~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
.+++.+.++. ++. .+++.+++ |+.-. | ..++.||+++|+|+|+.... .....+.+ -..|+..+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~-~~~g~~~~ 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIED-GETGFLVD 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhccc-CCceEEeC
Confidence 3678888776 443 46777888 77543 2 34899999999999986543 23334554 45566554
No 103
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.042 Score=51.52 Aligned_cols=302 Identities=12% Similarity=0.072 Sum_probs=154.5
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCC-CEEEEEECccch--hhhcCCCCCCCCceEEEcC-CCCCCCCCCCCcchHH
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIG-TRVTFAIAISAY--RRMANNPTPEDGLSFASFS-DGYDDGFNSKQNDRKH 81 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~--~~i~~~~~~~~gi~~~~~~-~~~~~~~~~~~~~~~~ 81 (424)
++||+++ .|++=.++-+-+|.+++.+.+ .+..++.+.... +.... -++...+. ..+.-+....+ .
T Consensus 3 ~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~------~le~~~i~~pdy~L~i~~~~----~ 71 (383)
T COG0381 3 MLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQ------VLELFGIRKPDYDLNIMKPG----Q 71 (383)
T ss_pred ceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHH------HHHHhCCCCCCcchhccccC----C
Confidence 5566555 568889999999999999987 777777776655 33222 12111222 12222111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEE--eCCCc-hhHHHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCccc
Q 036740 82 YMSEFKRRSSEALAELITASQNEGGQPFTCLV--YPQLL-PWAAEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIE 158 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv--~D~~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~ 158 (424)
-+......+-..+.+++++. +||+|+ .|..+ .++..+|..++||+.-+-.+.-+
T Consensus 72 tl~~~t~~~i~~~~~vl~~~------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt----------------- 128 (383)
T COG0381 72 TLGEITGNIIEGLSKVLEEE------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT----------------- 128 (383)
T ss_pred CHHHHHHHHHHHHHHHHHhh------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc-----------------
Confidence 12333333334455666654 899987 56555 45588889999998876333110
Q ss_pred CcCCccccCCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhh----cCCe
Q 036740 159 GKVNDLIELPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAID----KFNM 234 (424)
Q Consensus 159 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~----~~~~ 234 (424)
... ..++.. .++.... -+ +..+.+|-. .... .++ ..++
T Consensus 129 --------------~~~-~~PEE~---------------NR~l~~~--~S--~~hfapte~--ar~n--Ll~EG~~~~~I 170 (383)
T COG0381 129 --------------GDL-YFPEEI---------------NRRLTSH--LS--DLHFAPTEI--ARKN--LLREGVPEKRI 170 (383)
T ss_pred --------------CCC-CCcHHH---------------HHHHHHH--hh--hhhcCChHH--HHHH--HHHcCCCccce
Confidence 000 001111 1111111 11 333343322 2211 222 2247
Q ss_pred EEeccccCCCCCCCCcccCCCCcCCCChhHHhhh-hcCCCCCceEEEEecccccCCHHHHHHHHHHHHh----cCCCEEE
Q 036740 235 IAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEW-LSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD----SGHPFLW 309 (424)
Q Consensus 235 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~----~~~~~i~ 309 (424)
+.+|-...+..... .. ...+ + ...... +.. +++..|.+++=-..+.. +.+..+.+++.. . ..+.+
T Consensus 171 fvtGnt~iDal~~~-~~---~~~~--~-~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~v 240 (383)
T COG0381 171 FVTGNTVIDALLNT-RD---RVLE--D-SKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIV 240 (383)
T ss_pred EEeCChHHHHHHHH-Hh---hhcc--c-hhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceE
Confidence 77775543311000 00 0000 1 111111 222 23348888754333333 445556665544 3 23444
Q ss_pred EEecCCCCCccCCCCchhHHHHHHHHhC--CCeEEe---cccchhhhhccccceeeecccChhHHHHHHhcCCcEeeccc
Q 036740 310 VSRESDNKDKDKDKGEDDVMMKYKEELN--EKGMIV---PWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQ 384 (424)
Q Consensus 310 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~--~n~~v~---~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 384 (424)
+.... ... .+. +-..+.+. +|+.+. +|.+...+++++-+ ++|-.|. -.-||-..|+|.+++=.
T Consensus 241 iyp~H-~~~----~v~----e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~ 308 (383)
T COG0381 241 IYPVH-PRP----RVR----ELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRD 308 (383)
T ss_pred EEeCC-CCh----hhh----HHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeecc
Confidence 44433 111 221 21123343 457776 77778889999988 9998774 45699999999999998
Q ss_pred ccchhHHHHHHHhhhcceeEee
Q 036740 385 WTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 385 ~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
.-++|. +++ .|.-..+.
T Consensus 309 ~TERPE---~v~--agt~~lvg 325 (383)
T COG0381 309 TTERPE---GVE--AGTNILVG 325 (383)
T ss_pred CCCCcc---cee--cCceEEeC
Confidence 889887 444 45555554
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.45 E-value=0.11 Score=49.23 Aligned_cols=294 Identities=13% Similarity=0.091 Sum_probs=157.9
Q ss_pred cCCCccChHHHHHHHHHHHhC--CCEEEEEE-CccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHH
Q 036740 13 TFPIQGHINPSLQFARRLTRI--GTRVTFAI-AISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRR 89 (424)
Q Consensus 13 ~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
=.-+.|-++-..+|.++|.++ ++.+++-+ |+...+.+.+.-. ..+....+|=++ ...
T Consensus 55 HaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D~-----------~~~------- 114 (419)
T COG1519 55 HAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLDL-----------PIA------- 114 (419)
T ss_pred EecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcCc-----------hHH-------
Confidence 334779999999999999999 88888777 5555555544321 224444444221 111
Q ss_pred HHHHHHHHHHHHhhcCCCCeeEEE-eCCCchhH--HHHHHHcCCCcEEEechhhHHHHHHHhhhhccCCcccCcCCcccc
Q 036740 90 SSEALAELITASQNEGGQPFTCLV-YPQLLPWA--AEVARAYHLPSALLWLQPALVFDVYYYYFYGYGDLIEGKVNDLIE 166 (424)
Q Consensus 90 ~~~~~~~~l~~l~~~~~~~~D~vv-~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (424)
+...++.+ +||++| ++ .-.|. ..-+++.|+|.+.+..
T Consensus 115 ----v~rFl~~~------~P~l~Ii~E-tElWPnli~e~~~~~~p~~LvNa----------------------------- 154 (419)
T COG1519 115 ----VRRFLRKW------RPKLLIIME-TELWPNLINELKRRGIPLVLVNA----------------------------- 154 (419)
T ss_pred ----HHHHHHhc------CCCEEEEEe-ccccHHHHHHHHHcCCCEEEEee-----------------------------
Confidence 23344443 788766 55 34444 5556678999998621
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCcccccHHHHHHHHHHHhccCCCeEEEcCchhhhHHHHHHhhcCCeEEeccccCCCCC
Q 036740 167 LPGLPPLTGRDLPSFLDPRNSNDAYSFVLPSFKEQMEAIVEETDPRILVNTFDALEAETLKAIDKFNMIAIGPLVASALL 246 (424)
Q Consensus 167 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~ 246 (424)
+.++. . ...|..........+ .+- +.+++.+-.+-+ ....+.-.++...|-+=.+-..
T Consensus 155 -------RLS~r--S------~~~y~k~~~~~~~~~---~~i--~li~aQse~D~~--Rf~~LGa~~v~v~GNlKfd~~~ 212 (419)
T COG1519 155 -------RLSDR--S------FARYAKLKFLARLLF---KNI--DLILAQSEEDAQ--RFRSLGAKPVVVTGNLKFDIEP 212 (419)
T ss_pred -------eechh--h------hHHHHHHHHHHHHHH---Hhc--ceeeecCHHHHH--HHHhcCCcceEEecceeecCCC
Confidence 11100 0 011222222222222 233 566666544443 3344432347777766333111
Q ss_pred CCCcccCCCCcCCCChhHHhhhhcCCCC-CceEEEEecccccCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCCcc---
Q 036740 247 DGKEQYGGDLCKNSSKEYYMEWLSSKPK-SSVIYVAFGTICVLEKRQVEEIARGLLDS--GHPFLWVSRESDNKDKD--- 320 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~vvyvs~GS~~~~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~--- 320 (424)
+ .. +..+...|-..-+. + -+.|..+| -..+.+......+++.+. +...||+-+-. +.-++
T Consensus 213 ~----------~~-~~~~~~~~r~~l~~~r-~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHp-ERf~~v~~ 278 (419)
T COG1519 213 P----------PQ-LAAELAALRRQLGGHR-PVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHP-ERFKAVEN 278 (419)
T ss_pred C----------hh-hHHHHHHHHHhcCCCC-ceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCCh-hhHHHHHH
Confidence 0 00 22333444333332 3 35565556 333455566677777664 45667765432 21100
Q ss_pred ---CCCCchhHHHHHHH----HhCCCeEEecccch-hhhhccccce----eeecccChhHHHHHHhcCCcEeecccccch
Q 036740 321 ---KDKGEDDVMMKYKE----ELNEKGMIVPWCSQ-VEVLSHEAVG----CFVTHCGWSSSLESLVYGVPVVAFPQWTDQ 388 (424)
Q Consensus 321 ---~~~lp~~~~~~~~~----~~~~n~~v~~~~pq-~~lL~~~~~~----~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 388 (424)
...++. ..+.. ....++.+.|-+-- ..++.-+++. =++-+||+| ..|++++|+|+|.=|...-|
T Consensus 279 l~~~~gl~~---~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf 354 (419)
T COG1519 279 LLKRKGLSV---TRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNF 354 (419)
T ss_pred HHHHcCCeE---EeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccH
Confidence 000000 00000 01125555554443 2333334331 135699998 56999999999999999999
Q ss_pred hHHHHHHHhhhcceeEeee
Q 036740 389 GTNAKIIVDFCKTGVRVKA 407 (424)
Q Consensus 389 ~~na~rv~~~~G~G~~l~~ 407 (424)
.+-++++.+ .|.|+.++.
T Consensus 355 ~ei~~~l~~-~ga~~~v~~ 372 (419)
T COG1519 355 SDIAERLLQ-AGAGLQVED 372 (419)
T ss_pred HHHHHHHHh-cCCeEEECC
Confidence 999999999 999999984
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.43 E-value=0.056 Score=53.82 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=46.5
Q ss_pred CCCeEEecccchh---hhhccccceeeecc---cCh-hHHHHHHhcCCcEeeccccc--chhHHHHHHHhhhcceeEeee
Q 036740 337 NEKGMIVPWCSQV---EVLSHEAVGCFVTH---CGW-SSSLESLVYGVPVVAFPQWT--DQGTNAKIIVDFCKTGVRVKA 407 (424)
Q Consensus 337 ~~n~~v~~~~pq~---~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~ 407 (424)
.+|+.+....++. .+++.+++ ++.- -|. .+.+||+++|+|.|+....+ |.-.+...-.+ .|.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeCC
Confidence 5678766333443 46778888 6643 233 47789999999999765432 21111111113 457888775
Q ss_pred cCCCccchHHHHHhhh
Q 036740 408 NEEGIVESDEINRCLE 423 (424)
Q Consensus 408 ~~~~~~~~~~l~~ai~ 423 (424)
. +.++++++++
T Consensus 427 ~-----~~~~l~~~i~ 437 (476)
T cd03791 427 Y-----NADALLAALR 437 (476)
T ss_pred C-----CHHHHHHHHH
Confidence 3 5666766664
No 106
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.42 E-value=0.0016 Score=63.06 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=73.0
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHh---CCCeEEecccchh
Q 036740 273 PKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEEL---NEKGMIVPWCSQV 349 (424)
Q Consensus 273 ~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~---~~n~~v~~~~pq~ 349 (424)
+++.++|.+|.+.....++.+..-.+-|+..+...+|..... ... ++.+....+.. ++++.+.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~-~~~-------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFP-ASG-------EARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETS-TTH-------HHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCC-HHH-------HHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 345699999999999999999999999999888889988654 211 11111111122 2678888888875
Q ss_pred hhh---ccccceeee---cccChhHHHHHHhcCCcEeeccccc-chhHHHHHHHhhhcceeEeee
Q 036740 350 EVL---SHEAVGCFV---THCGWSSSLESLVYGVPVVAFPQWT-DQGTNAKIIVDFCKTGVRVKA 407 (424)
Q Consensus 350 ~lL---~~~~~~~~I---~HgG~gs~~eal~~GvP~v~~P~~~-DQ~~na~rv~~~~G~G~~l~~ 407 (424)
+-| ..+++ ++ ..+|..|++|||+.|||+|.+|-.. =...-|..+.. +|+.-.+..
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~ 415 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD 415 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC
Confidence 544 34555 43 5689999999999999999999543 45566667776 888765554
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.42 E-value=0.07 Score=53.08 Aligned_cols=126 Identities=11% Similarity=0.139 Sum_probs=68.4
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHh---cCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchh---h
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLD---SGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQV---E 350 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~---~ 350 (424)
.+++..|.+.. ...+..+++++.. .+.++++. +.+ .. ... +....+.+..+.++.+....+.. .
T Consensus 292 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~-G~g--~~----~~~-~~l~~~~~~~~~~v~~~~~~~~~~~~~ 361 (473)
T TIGR02095 292 PLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVL-GTG--DP----ELE-EALRELAERYPGNVRVIIGYDEALAHL 361 (473)
T ss_pred CEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEE-CCC--CH----HHH-HHHHHHHHHCCCcEEEEEcCCHHHHHH
Confidence 45556677663 2334555555544 34444433 222 11 111 01122333445677776555553 4
Q ss_pred hhccccceeeecc---cChh-HHHHHHhcCCcEeecccccchhHHHHHHHh-----hhcceeEeeecCCCccchHHHHHh
Q 036740 351 VLSHEAVGCFVTH---CGWS-SSLESLVYGVPVVAFPQWTDQGTNAKIIVD-----FCKTGVRVKANEEGIVESDEINRC 421 (424)
Q Consensus 351 lL~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~-----~~G~G~~l~~~~~~~~~~~~l~~a 421 (424)
+++.+++ +|.- -|.| +.+||+++|+|.|+....+ ....+.+ .-+.|..++.. +.++++++
T Consensus 362 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~~-----d~~~la~~ 430 (473)
T TIGR02095 362 IYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEEY-----DPGALLAA 430 (473)
T ss_pred HHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCCC-----CHHHHHHH
Confidence 7788888 7643 3444 7889999999999865432 2223332 02778777743 66677766
Q ss_pred hh
Q 036740 422 LE 423 (424)
Q Consensus 422 i~ 423 (424)
|.
T Consensus 431 i~ 432 (473)
T TIGR02095 431 LS 432 (473)
T ss_pred HH
Confidence 54
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.40 E-value=0.14 Score=49.24 Aligned_cols=73 Identities=22% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCCeEEecccchhh---hhccccceeee------cccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEee
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFV------THCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I------~HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
.+|+.+.+++|+.+ .++++++.++- +.++. +.+.|++++|+|+|..++ ...++. .+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 37999999999765 56788884432 23333 458999999999998763 223333 34 33333
Q ss_pred ecCCCccchHHHHHhhh
Q 036740 407 ANEEGIVESDEINRCLE 423 (424)
Q Consensus 407 ~~~~~~~~~~~l~~ai~ 423 (424)
.. +.++++++|+
T Consensus 324 ~~-----d~~~~~~ai~ 335 (373)
T cd04950 324 AD-----DPEEFVAAIE 335 (373)
T ss_pred CC-----CHHHHHHHHH
Confidence 21 6777777764
No 109
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.38 E-value=0.079 Score=47.96 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=71.3
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEEECc--cchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 036740 14 FPIQGHINPSLQFARRLTRIGTRVTFAIAI--SAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSS 91 (424)
Q Consensus 14 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~--~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (424)
.+-.-|+.-+-.+-++|.++||+|.+-+-+ ...+.+.. .||.+..+...-. .+. .+.+...... .
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk~g~------~tl-~~Kl~~~~eR-~ 73 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL-----YGFPYKSIGKHGG------VTL-KEKLLESAER-V 73 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH-----hCCCeEeecccCC------ccH-HHHHHHHHHH-H
Confidence 345668888999999999999999888754 34466777 8999888764210 011 2122222222 1
Q ss_pred HHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechh
Q 036740 92 EALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQP 139 (424)
Q Consensus 92 ~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 139 (424)
..+.++..+ .+||+.+. -.+..+..+|..+|+|.+.+.-+.
T Consensus 74 ~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 74 YKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 222333333 39999999 678889999999999999975543
No 110
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.27 E-value=0.21 Score=48.59 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCCE-EEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccc-h---hhhhccccceeeeccc-
Q 036740 291 RQVEEIARGLLDSGHPF-LWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCS-Q---VEVLSHEAVGCFVTHC- 364 (424)
Q Consensus 291 ~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~p-q---~~lL~~~~~~~~I~Hg- 364 (424)
..+..+++++...+.++ ++..+.+ .. . ..+++...++.. + .++++.+++ ||.-.
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g--~~----~------------~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~ 315 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKF--SP----F------------TAGNVVNHGFETDKRKLMSALNQMDA--LVFSSR 315 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCC--Cc----c------------cccceEEecCcCCHHHHHHHHHhCCE--EEECCc
Confidence 34577888888765444 3344332 11 1 124566666653 2 335666777 77633
Q ss_pred ---ChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeec
Q 036740 365 ---GWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 365 ---G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 408 (424)
--.+++||+++|+|+|+....+ ....+. .+-|..+++.
T Consensus 316 ~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~--~~~G~lv~~~ 356 (405)
T PRK10125 316 VDNYPLILCEALSIGVPVIATHSDA----AREVLQ--KSGGKTVSEE 356 (405)
T ss_pred cccCcCHHHHHHHcCCCEEEeCCCC----hHHhEe--CCcEEEECCC
Confidence 3358899999999999987654 222233 3467777654
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.21 E-value=0.32 Score=49.62 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=34.2
Q ss_pred CeEEecccchh-hhhccccceeeec---ccC-hhHHHHHHhcCCcEeeccccc
Q 036740 339 KGMIVPWCSQV-EVLSHEAVGCFVT---HCG-WSSSLESLVYGVPVVAFPQWT 386 (424)
Q Consensus 339 n~~v~~~~pq~-~lL~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~ 386 (424)
++.+.++.++. .+++.+++ ||. +=| ..++.||+++|+|+|+.-..+
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG 652 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPS 652 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCC
Confidence 45566777765 48888888 775 333 368899999999999987654
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.07 E-value=0.083 Score=50.27 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=72.8
Q ss_pred cCCeEEeccccCCCCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHh-----cCC
Q 036740 231 KFNMIAIGPLVASALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD-----SGH 305 (424)
Q Consensus 231 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~-----~~~ 305 (424)
+.++.|||-.+.+...+ .. +.....+.+ -.+++++|-+=-||-.+-=...+..++++.+. .+.
T Consensus 152 g~~~~~VGHPl~d~~~~----------~~-~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l 219 (373)
T PF02684_consen 152 GVPVTYVGHPLLDEVKP----------EP-DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDL 219 (373)
T ss_pred CCCeEEECCcchhhhcc----------CC-CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 56799999444331111 00 113333333 33466689888898552112223344555443 244
Q ss_pred CEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEec-ccchhhhhccccceeeecccChhHHHHHHhcCCcEeecc-
Q 036740 306 PFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVP-WCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFP- 383 (424)
Q Consensus 306 ~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~-~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P- 383 (424)
.|++..... ..+ . ...........++.+.- .-.-.+++..+++ .+.-.|- .|.|+...|+|||++=
T Consensus 220 ~fvvp~a~~-~~~----~----~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk 287 (373)
T PF02684_consen 220 QFVVPVAPE-VHE----E----LIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYK 287 (373)
T ss_pred EEEEecCCH-HHH----H----HHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEc
Confidence 555544322 111 0 00111112233333332 2233557888888 7776665 4569999999998853
Q ss_pred cccchhHHHHHHHh
Q 036740 384 QWTDQGTNAKIIVD 397 (424)
Q Consensus 384 ~~~DQ~~na~rv~~ 397 (424)
...=.+..|+++.+
T Consensus 288 ~~~lt~~iak~lvk 301 (373)
T PF02684_consen 288 VSPLTYFIAKRLVK 301 (373)
T ss_pred CcHHHHHHHHHhhc
Confidence 33345566777765
No 113
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.85 E-value=0.0013 Score=49.41 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=44.1
Q ss_pred hHHhhhhcCCCCCceEEEEecccccC---CH--HHHHHHHHHHHhcCCCEEEEEecC
Q 036740 263 EYYMEWLSSKPKSSVIYVAFGTICVL---EK--RQVEEIARGLLDSGHPFLWVSRES 314 (424)
Q Consensus 263 ~~~~~~l~~~~~~~vvyvs~GS~~~~---~~--~~~~~~~~~l~~~~~~~i~~~~~~ 314 (424)
..+..|+...++++.|+||+||.... .. ..+..++++++..+..++..+...
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 67778999999999999999998843 22 468899999999999999998765
No 114
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.85 E-value=0.011 Score=49.70 Aligned_cols=75 Identities=27% Similarity=0.375 Sum_probs=56.8
Q ss_pred CCCeEEecccch---hhhhccccceeeecc----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecC
Q 036740 337 NEKGMIVPWCSQ---VEVLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE 409 (424)
Q Consensus 337 ~~n~~v~~~~pq---~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 409 (424)
.+++.+.+++++ ..++..+++ +|+. |...++.||+++|+|+|+. |...+...+.+ .+.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~-~~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIIND-GVNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGT-TTSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeecc-ccceEEeCC--
Confidence 368999999983 557888888 7766 6667999999999999974 46667777776 677998885
Q ss_pred CCccchHHHHHhhh
Q 036740 410 EGIVESDEINRCLE 423 (424)
Q Consensus 410 ~~~~~~~~l~~ai~ 423 (424)
-+.++++++|+
T Consensus 143 ---~~~~~l~~~i~ 153 (172)
T PF00534_consen 143 ---NDIEELADAIE 153 (172)
T ss_dssp ---TSHHHHHHHHH
T ss_pred ---CCHHHHHHHHH
Confidence 38888888775
No 115
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.84 E-value=0.0034 Score=50.49 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=46.4
Q ss_pred CCCeEEecccch-hhhhccccceeeecc--cC-hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCc
Q 036740 337 NEKGMIVPWCSQ-VEVLSHEAVGCFVTH--CG-WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 412 (424)
Q Consensus 337 ~~n~~v~~~~pq-~~lL~~~~~~~~I~H--gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 412 (424)
.+|+.+.+|++. .++++.+++.+..+. .| .+++.|++++|+|+|+.+. .....+++ .+.|..+ .+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~-~~~~~~~-~~---- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEE-DGCGVLV-AN---- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--TT----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheee-cCCeEEE-CC----
Confidence 379999999975 557889999766542 23 4899999999999999776 12334443 5777777 32
Q ss_pred cchHHHHHhhh
Q 036740 413 VESDEINRCLE 423 (424)
Q Consensus 413 ~~~~~l~~ai~ 423 (424)
+.++++++|+
T Consensus 121 -~~~~l~~~i~ 130 (135)
T PF13692_consen 121 -DPEELAEAIE 130 (135)
T ss_dssp --HHHHHHHHH
T ss_pred -CHHHHHHHHH
Confidence 7888888875
No 116
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.82 E-value=0.19 Score=47.83 Aligned_cols=107 Identities=9% Similarity=0.141 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcCCCCCCCCce-EEEcCCCCCCCCCCCCcchHH
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMANNPTPEDGLS-FASFSDGYDDGFNSKQNDRKH 81 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~gi~-~~~~~~~~~~~~~~~~~~~~~ 81 (424)
.++||+++-....|++.=..++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++.. .... ..
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~id~vi~~~~~-------~~~~-~~ 71 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN----PEINALYGIKNK-------KAGA-SE 71 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC----CCceEEEEeccc-------cccH-HH
Confidence 57899999999999999999999999997 8999999999888877663 2332 2223211 0001 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEE
Q 036740 82 YMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSAL 134 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 134 (424)
.+ ..+..++.+++.. ++|++|.=........++...|.+...
T Consensus 72 ~~--------~~~~~l~~~lr~~---~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 72 KI--------KNFFSLIKVLRAN---KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HH--------HHHHHHHHHHhhC---CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 11 1122445566554 999999544444456667777777655
No 117
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.77 E-value=0.081 Score=50.63 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=53.2
Q ss_pred CCCeEEecccch-hhhhccccceeeecc--cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCcc
Q 036740 337 NEKGMIVPWCSQ-VEVLSHEAVGCFVTH--CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIV 413 (424)
Q Consensus 337 ~~n~~v~~~~pq-~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 413 (424)
.+++.+.++.++ ..++..+++-++.++ |...+++||+++|+|+|+..... .....+++ -..|..++..
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~~----- 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPKG----- 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCCC-----
Confidence 357777787776 558888888444454 33468999999999999865331 13445565 5677777743
Q ss_pred chHHHHHhhh
Q 036740 414 ESDEINRCLE 423 (424)
Q Consensus 414 ~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 331 d~~~la~~i~ 340 (372)
T cd04949 331 DIEALAEAII 340 (372)
T ss_pred cHHHHHHHHH
Confidence 6677777664
No 118
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.76 E-value=0.18 Score=50.18 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=51.9
Q ss_pred CCCeEEecccchhhhhccccceeeecc----cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhh-----c-ceeEee
Q 036740 337 NEKGMIVPWCSQVEVLSHEAVGCFVTH----CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFC-----K-TGVRVK 406 (424)
Q Consensus 337 ~~n~~v~~~~pq~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~-----G-~G~~l~ 406 (424)
.+|+.+.+...-.++++.+++ +|.- |--.++.||+++|+|+|+.. .......+.+ . | .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~-~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEG-ADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcC-CcccccCCceEEEC
Confidence 378888886666778888888 6643 33468999999999999853 3444444543 3 2 677777
Q ss_pred ecCCCccchHHHHHhhh
Q 036740 407 ANEEGIVESDEINRCLE 423 (424)
Q Consensus 407 ~~~~~~~~~~~l~~ai~ 423 (424)
.. +.++++++|.
T Consensus 426 ~~-----d~~~la~ai~ 437 (475)
T cd03813 426 PA-----DPEALARAIL 437 (475)
T ss_pred CC-----CHHHHHHHHH
Confidence 53 6777777764
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.71 E-value=0.35 Score=42.03 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=35.8
Q ss_pred CCCeEEecccch----hhhhccccceeeecccC----hhHHHHHHhcCCcEeeccccc
Q 036740 337 NEKGMIVPWCSQ----VEVLSHEAVGCFVTHCG----WSSSLESLVYGVPVVAFPQWT 386 (424)
Q Consensus 337 ~~n~~v~~~~pq----~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~ 386 (424)
.+|+.+.+++++ ..+++.+++ +|+-.. .+++.||+++|+|+|+.+...
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 368888888633 223444777 777776 689999999999999988654
No 120
>PLN02316 synthase/transferase
Probab=96.69 E-value=1.2 Score=47.95 Aligned_cols=41 Identities=10% Similarity=0.237 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCC-----ccChH-HHHHHHHHHHhCCCEEEEEECcc
Q 036740 4 QQQPHFLLLTFPI-----QGHIN-PSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 4 ~~~~~il~~~~~~-----~GH~~-p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
..+|||++++.-. .|-+. -.-.|+++|+++||+|.++++..
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 3679999998621 23333 34689999999999999999864
No 121
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.68 E-value=0.16 Score=47.64 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=40.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcC
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~ 51 (424)
||+++-....|++.=+.++.++|+++ +.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 68999999999999999999999997 899999999888887775
No 122
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=96.64 E-value=0.028 Score=54.74 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=75.8
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHhc-----CCCEEEEEecCCCCCccCCCCchhHHHHHHHH--hCCCeEEecccch
Q 036740 276 SVIYVAFGTICVLEKRQVEEIARGLLDS-----GHPFLWVSRESDNKDKDKDKGEDDVMMKYKEE--LNEKGMIVPWCSQ 348 (424)
Q Consensus 276 ~vvyvs~GS~~~~~~~~~~~~~~~l~~~-----~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~--~~~n~~v~~~~pq 348 (424)
...+++.|.+... ..+..+++++... +.++.|.+-+. +... ..+ ....+. ..+++.+.+|+++
T Consensus 230 ~~~il~~Grl~~~--Kg~~~li~a~~~l~~~~p~~~l~~~iiG~-g~~~--~~l-----~~~~~~~~~~~~V~f~G~v~~ 299 (407)
T cd04946 230 TLRIVSCSYLVPV--KRVDLIIKALAALAKARPSIKIKWTHIGG-GPLE--DTL-----KELAESKPENISVNFTGELSN 299 (407)
T ss_pred CEEEEEeeccccc--cCHHHHHHHHHHHHHhCCCceEEEEEEeC-chHH--HHH-----HHHHHhcCCCceEEEecCCCh
Confidence 3556667777632 2344555555432 24676765544 3210 011 111111 1356888899998
Q ss_pred hh---hhccccceeeecccC----hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHh
Q 036740 349 VE---VLSHEAVGCFVTHCG----WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRC 421 (424)
Q Consensus 349 ~~---lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~a 421 (424)
.+ ++..+++.+||...- ..+++||+++|+|+|+... ......+.+ .+.|..+... -+.++++++
T Consensus 300 ~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~-~~~G~l~~~~----~~~~~la~~ 370 (407)
T cd04946 300 SEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDN-GGNGLLLSKD----PTPNELVSS 370 (407)
T ss_pred HHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcC-CCcEEEeCCC----CCHHHHHHH
Confidence 65 444444444776543 3689999999999998553 345667776 5588887642 367778877
Q ss_pred hh
Q 036740 422 LE 423 (424)
Q Consensus 422 i~ 423 (424)
|.
T Consensus 371 I~ 372 (407)
T cd04946 371 LS 372 (407)
T ss_pred HH
Confidence 75
No 123
>PLN02949 transferase, transferring glycosyl groups
Probab=96.62 E-value=0.84 Score=45.18 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=35.3
Q ss_pred CCCeEEecccchhh---hhccccceeeec---ccChh-HHHHHHhcCCcEeeccc
Q 036740 337 NEKGMIVPWCSQVE---VLSHEAVGCFVT---HCGWS-SSLESLVYGVPVVAFPQ 384 (424)
Q Consensus 337 ~~n~~v~~~~pq~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~ 384 (424)
.+++.+.+++|+.+ +|+.+++ +|+ +-|.| ++.||+++|+|.|+...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~ 386 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNS 386 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCC
Confidence 47899999998754 6777887 663 33444 79999999999999764
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.49 E-value=0.025 Score=45.70 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=63.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh-cCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM-ANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEF 86 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i-~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
||++++.....| ...+++.|.++||+|++++.....+.. .. .|+.+..++... ... ..++. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~-----~~i~~~~~~~~~-------k~~-~~~~~-~ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII-----EGIKVIRLPSPR-------KSP-LNYIK-Y 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh-----CCeEEEEecCCC-------Ccc-HHHHH-H
Confidence 477777766555 568899999999999999986554333 24 788888884220 112 22221 1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCch---hHHHHHHHcC-CCcEEE
Q 036740 87 KRRSSEALAELITASQNEGGQPFTCLVYPQLLP---WAAEVARAYH-LPSALL 135 (424)
Q Consensus 87 ~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lg-iP~v~~ 135 (424)
. .+..++++ . +||+|.+..... .+..++...+ +|.|..
T Consensus 64 ----~-~l~k~ik~---~---~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 64 ----F-RLRKIIKK---E---KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred ----H-HHHHHhcc---C---CCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1 22344433 3 899998776543 2445667788 888864
No 125
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.20 E-value=1.2 Score=42.34 Aligned_cols=103 Identities=11% Similarity=-0.011 Sum_probs=70.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcCCCCCCCCceEE-EcCCCCCCCCCCCCcchHHHH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMANNPTPEDGLSFA-SFSDGYDDGFNSKQNDRKHYM 83 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~ 83 (424)
|||+++-..+.|++.=..++.+.|+++ +.+|++++.+.+.+.++.. +.++-+ .++.. . .. .. +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~vd~vi~~~~~--~------~~-~~-~ 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----PEVNEAIPMPLG--H------GA-LE-I 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----CccCEEEecccc--c------ch-hh-h
Confidence 689999999999999999999999995 8999999998888887764 333322 22211 0 00 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEE
Q 036740 84 SEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSAL 134 (424)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 134 (424)
....++..+++.. ++|++|.=....-...++...|+|...
T Consensus 67 --------~~~~~l~~~lr~~---~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 --------GERRRLGHSLREK---RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --------HHHHHHHHHHHhc---CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1122444556554 999998544445566777777887654
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.072 Score=52.20 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=74.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHh---CCCeEEecccchh
Q 036740 273 PKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEEL---NEKGMIVPWCSQV 349 (424)
Q Consensus 273 ~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~---~~n~~v~~~~pq~ 349 (424)
+++.+||+||+-.....++.+..-++-|+...-.++|..+++ ..+ .+- +...+..++. .++.++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~----~~~-~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDA----EIN-ARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcH----HHH-HHHHHHHHHcCCChhheeecCCCCCH
Confidence 355699999999999999999999999999888999998875 332 111 1111222222 2577777777754
Q ss_pred hh---hccccceeee---cccChhHHHHHHhcCCcEeecc
Q 036740 350 EV---LSHEAVGCFV---THCGWSSSLESLVYGVPVVAFP 383 (424)
Q Consensus 350 ~l---L~~~~~~~~I---~HgG~gs~~eal~~GvP~v~~P 383 (424)
+- +.-+++ |. --||+.|+.|+|..|||+|.++
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~ 538 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV 538 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec
Confidence 43 344666 65 4799999999999999999987
No 127
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.00 E-value=0.097 Score=50.46 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=53.6
Q ss_pred HhCCCeEEecccchhh---hhccccceeeecc----cCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEee
Q 036740 335 ELNEKGMIVPWCSQVE---VLSHEAVGCFVTH----CGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 335 ~~~~n~~v~~~~pq~~---lL~~~~~~~~I~H----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
....++.+.+++|+.+ +++.+++ +|.- .|. .++.||+++|+|+|+.... .+...+++ -..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~-~~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLE-GITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhccc-CCceEEEe
Confidence 3456888889998654 5788888 6643 343 5778999999999997653 34555665 56677553
Q ss_pred ecCCCccchHHHHHhhh
Q 036740 407 ANEEGIVESDEINRCLE 423 (424)
Q Consensus 407 ~~~~~~~~~~~l~~ai~ 423 (424)
. .-+.++++++|.
T Consensus 327 ~----~~d~~~la~~I~ 339 (380)
T PRK15484 327 E----PMTSDSIISDIN 339 (380)
T ss_pred C----CCCHHHHHHHHH
Confidence 2 236777777764
No 128
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.82 E-value=1.1 Score=42.14 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=41.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~ 51 (424)
|||+++-..+.|++.=..++.+.|+++ +.+|++++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 689999999999999999999999997 899999999888877765
No 129
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.81 E-value=0.87 Score=42.86 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=69.6
Q ss_pred hhhHHHHHHhhcCCeEEeccccCC-CCCCCCcccCCCCcCCCChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHH
Q 036740 220 ALEAETLKAIDKFNMIAIGPLVAS-ALLDGKEQYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIAR 298 (424)
Q Consensus 220 ~l~~~~~~~~~~~~~~~vGpl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~ 298 (424)
.+|+...... +-+..|||--+.+ -+. .+ ++....+-+....++.++.+-.||-.+-=...+..+.+
T Consensus 145 PFE~~~y~k~-g~~~~yVGHpl~d~i~~-----------~~-~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~ 211 (381)
T COG0763 145 PFEPAFYDKF-GLPCTYVGHPLADEIPL-----------LP-DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQ 211 (381)
T ss_pred CCCHHHHHhc-CCCeEEeCChhhhhccc-----------cc-cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHH
Confidence 3454332222 4468999954443 111 11 33555555655566678999999966321222333444
Q ss_pred HHHh-----cCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhC--CCeEEecccchhhhhccccceeeecccChhHHHH
Q 036740 299 GLLD-----SGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELN--EKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLE 371 (424)
Q Consensus 299 ~l~~-----~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~--~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~e 371 (424)
+... .+.+|+.-+... ..+ .+. ..+.+... .+.++.+--- .+.+..|++ .+.-+|-.| .|
T Consensus 212 a~~~l~~~~~~~~~vlp~~~~-~~~----~~~----~~~~~~~~~~~~~~~~~~~~-~~a~~~aD~--al~aSGT~t-LE 278 (381)
T COG0763 212 AAQELKARYPDLKFVLPLVNA-KYR----RII----EEALKWEVAGLSLILIDGEK-RKAFAAADA--ALAASGTAT-LE 278 (381)
T ss_pred HHHHHHhhCCCceEEEecCcH-HHH----HHH----HHHhhccccCceEEecCchH-HHHHHHhhH--HHHhccHHH-HH
Confidence 4443 346677655432 111 111 11110100 1222222222 235666777 777777654 59
Q ss_pred HHhcCCcEeec
Q 036740 372 SLVYGVPVVAF 382 (424)
Q Consensus 372 al~~GvP~v~~ 382 (424)
+..+|+|||+.
T Consensus 279 ~aL~g~P~Vv~ 289 (381)
T COG0763 279 AALAGTPMVVA 289 (381)
T ss_pred HHHhCCCEEEE
Confidence 99999999984
No 130
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.44 E-value=0.033 Score=45.73 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEECccchhh--hcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036740 21 NPSLQFARRLTRIGTRVTFAIAISAYRR--MANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELI 98 (424)
Q Consensus 21 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~--i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (424)
.-+..|+++|.++||+|+++++...... ... .++++..++-..... ..... .++ ..+..++
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~--~~~--------~~~~~~l 67 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEEE-----DGVRVHRLPLPRRPW--PLRLL--RFL--------RRLRRLL 67 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEEE-----TTEEEEEE--S-SSS--GGGHC--CHH--------HHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccccccc-----CCceEEeccCCccch--hhhhH--HHH--------HHHHHHH
Confidence 3467899999999999999997554442 333 678887776221110 00111 111 1122233
Q ss_pred HHHhhcCCCCeeEEEeCCCc-hhHHHHHH-HcCCCcEEEe
Q 036740 99 TASQNEGGQPFTCLVYPQLL-PWAAEVAR-AYHLPSALLW 136 (424)
Q Consensus 99 ~~l~~~~~~~~D~vv~D~~~-~~~~~~A~-~lgiP~v~~~ 136 (424)
.... .+||+|.+.... .....+++ ..++|+|...
T Consensus 68 -~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 68 -AARR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp -HHCT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred -hhhc---cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 1122 499999977643 23344445 7899998853
No 131
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.38 E-value=1.9 Score=40.65 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=72.0
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHH
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIG--TRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYM 83 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
+|+|+++-....|++.=..++.+.|.++. .++++++++.+.+.+...+ .+.-+..-.. .. ..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p----~I~~vi~~~~--~~--------~~-- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP----EIDKVIIIDK--KK--------KG-- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh----Hhhhhccccc--cc--------cc--
Confidence 58999999999999999999999999985 9999999998888777632 2211110000 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEE
Q 036740 84 SEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSAL 134 (424)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 134 (424)
........+.+.+... ++|+||.=....-...++...++|.-.
T Consensus 65 -----~~~~~~~~l~~~lr~~---~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 -----LGLKERLALLRTLRKE---RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -----cchHHHHHHHHHhhcc---CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 1112224555566554 899999766666677777788888765
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.31 E-value=2.7 Score=39.81 Aligned_cols=105 Identities=9% Similarity=0.109 Sum_probs=70.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcCCCCCCCCce-EEEcCCCCCCCCCCCCcchHHHHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMANNPTPEDGLS-FASFSDGYDDGFNSKQNDRKHYMS 84 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
||+++-..+.|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++.... ... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~~~~~------~~~----~~ 66 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----PDINALYGLDRKKA------KAG----ER 66 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----CCccEEEEeChhhh------cch----HH
Confidence 68999999999999999999999996 8999999999888877763 3343 233321100 000 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEE
Q 036740 85 EFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSAL 134 (424)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 134 (424)
.+. ....++..++.. ++|++|.=........++...|.|...
T Consensus 67 ~~~-----~~~~l~~~lr~~---~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 KLA-----NQFHLIKVLRAN---RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHH-----HHHHHHHHHHhC---CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 111 112344555554 999999544445567888888888665
No 133
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.15 E-value=0.33 Score=40.59 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=52.7
Q ss_pred hCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcch-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCee
Q 036740 32 RIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDR-KHYMSEFKRRSSEALAELITASQNEGGQPFT 110 (424)
Q Consensus 32 ~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D 110 (424)
++||+|+|++........ .|++.+.+...-... ...... ..+-..++.. ..+...+.+|++. +..||
T Consensus 1 q~gh~v~fl~~~~~~~~~-------~GV~~~~y~~~~~~~--~~~~~~~~~~e~~~~rg--~av~~a~~~L~~~-Gf~PD 68 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-------PGVRVVRYRPPRGPT--PGTHPYVRDFEAAVLRG--QAVARAARQLRAQ-GFVPD 68 (171)
T ss_pred CCCCEEEEEecCCCCCCC-------CCcEEEEeCCCCCCC--CCCCcccccHHHHHHHH--HHHHHHHHHHHHc-CCCCC
Confidence 479999999944333221 378888775411111 111110 1122222222 2333445556555 77899
Q ss_pred EEEeCCCchhHHHHHHHc-CCCcEEE
Q 036740 111 CLVYPQLLPWAAEVARAY-HLPSALL 135 (424)
Q Consensus 111 ~vv~D~~~~~~~~~A~~l-giP~v~~ 135 (424)
+||....--.++-+-+.+ +.|.+.+
T Consensus 69 vI~~H~GWGe~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 69 VIIAHPGWGETLFLKDVFPDAPLIGY 94 (171)
T ss_pred EEEEcCCcchhhhHHHhCCCCcEEEE
Confidence 999996655567777778 8898885
No 134
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.09 E-value=3.1 Score=39.23 Aligned_cols=102 Identities=9% Similarity=-0.000 Sum_probs=68.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcCCCCCCCCceE-EEcCCCCCCCCCCCCcchHHHHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMANNPTPEDGLSF-ASFSDGYDDGFNSKQNDRKHYMS 84 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
||+++-..+.|++.=..++.+.|++. +.+|++++.+.+.+.++.. +.++- +.++.. . . . ..+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~id~v~~~~~~--~-----~-~-~~~~- 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM----PEIRQAIDMPLG--H-----G-A-LELT- 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC----chhceeeecCCc--c-----c-c-hhhh-
Confidence 68999999999999999999999996 8999999998887777763 23321 122211 0 0 0 1110
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEE
Q 036740 85 EFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSAL 134 (424)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 134 (424)
....+.++++.. ++|++|.-........++...|+|.-.
T Consensus 67 --------~~~~~~~~lr~~---~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 --------ERRRLGRSLREE---RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred --------HHHHHHHHHhhc---CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 112344555544 999999765555566777777887654
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.08 E-value=0.15 Score=50.39 Aligned_cols=125 Identities=19% Similarity=0.339 Sum_probs=82.4
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHh---CCCeEEecccchhh
Q 036740 274 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEEL---NEKGMIVPWCSQVE 350 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~---~~n~~v~~~~pq~~ 350 (424)
++.+||++|--....+++.++.-.+-|+.....++|.+..+ ... +.+...+.+.. ++++++.+-++-.+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfP-a~g-------e~rf~ty~~~~Gl~p~riifs~va~k~e 828 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP-AVG-------EQRFRTYAEQLGLEPDRIIFSPVAAKEE 828 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecc-ccc-------hHHHHHHHHHhCCCccceeeccccchHH
Confidence 45599999999999999999999999999888999999776 221 10111122222 35666666555433
Q ss_pred -----hhccccceeeecccChhHHHHHHhcCCcEeecccccchhH-HHHHHHhhhcceeEeeec
Q 036740 351 -----VLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGT-NAKIIVDFCKTGVRVKAN 408 (424)
Q Consensus 351 -----lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~-na~rv~~~~G~G~~l~~~ 408 (424)
.|+.-.+.-+.+. |+.|.++.|+.|||||.+|...--.. -+-.+.. .|+|-.+.++
T Consensus 829 Hvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak~ 890 (966)
T KOG4626|consen 829 HVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAKN 890 (966)
T ss_pred HHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhhh
Confidence 2222222224444 88999999999999999997653333 3344555 7888766553
No 136
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=95.08 E-value=2.6 Score=42.21 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=46.2
Q ss_pred CCCeEEecccchhhhhccccceeeec---ccCh-hHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEee
Q 036740 337 NEKGMIVPWCSQVEVLSHEAVGCFVT---HCGW-SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 337 ~~n~~v~~~~pq~~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
.+++.+.++.+..+++..+++ +|. .-|. .+++||+++|+|+|+.-.. ..+...+++ -.-|..++
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~-g~nG~lv~ 442 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIED-NKNGYLIP 442 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccC-CCCEEEEe
Confidence 356888898888889999998 665 3444 5899999999999986542 123445555 45677766
No 137
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.67 E-value=5.5 Score=40.09 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=46.9
Q ss_pred CCCeEEecccch-hhhhccccceeeec---ccC-hhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeee
Q 036740 337 NEKGMIVPWCSQ-VEVLSHEAVGCFVT---HCG-WSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKA 407 (424)
Q Consensus 337 ~~n~~v~~~~pq-~~lL~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 407 (424)
.+++.+.+|..+ ..+|+.+++ ||. +-| .+++.||+++|+|+|+... ..+...+.+ -..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~d-G~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIE-GVSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHccc-CCcEEEECC
Confidence 378899888765 457888998 875 345 4699999999999997764 345566665 566777664
No 138
>PHA01633 putative glycosyl transferase group 1
Probab=94.39 E-value=0.31 Score=45.82 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=51.6
Q ss_pred hCCCeEEe---cccchh---hhhccccceeeecc---cCh-hHHHHHHhcCCcEeeccc------ccch------hHHHH
Q 036740 336 LNEKGMIV---PWCSQV---EVLSHEAVGCFVTH---CGW-SSSLESLVYGVPVVAFPQ------WTDQ------GTNAK 393 (424)
Q Consensus 336 ~~~n~~v~---~~~pq~---~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~ 393 (424)
.++++.+. +++++. ++++.+++ ||.- =|+ .+++||+++|+|+|+.-. .+|+ ..++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 34788887 555654 56777888 7763 344 578899999999998633 2332 33333
Q ss_pred HHH--hhhcceeEeeecCCCccchHHHHHhhh
Q 036740 394 IIV--DFCKTGVRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 394 rv~--~~~G~G~~l~~~~~~~~~~~~l~~ai~ 423 (424)
... + .|.|...+ ..+.++++++|.
T Consensus 277 ~~~~~~-~g~g~~~~-----~~d~~~la~ai~ 302 (335)
T PHA01633 277 EYYDKE-HGQKWKIH-----KFQIEDMANAII 302 (335)
T ss_pred HhcCcc-cCceeeec-----CCCHHHHHHHHH
Confidence 333 3 46666666 468888887774
No 139
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.78 E-value=0.61 Score=43.42 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=35.9
Q ss_pred CCeEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 6 QPHFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 6 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
++||+|++. |+-|-..-..++|-.|++.|.+|.+++++..+.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 468888888 788999999999999999999988888776554
No 140
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.73 E-value=0.88 Score=37.74 Aligned_cols=32 Identities=28% Similarity=0.245 Sum_probs=24.5
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 15 PIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 15 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
...|=-.-+..|+++|+++||+|+++++....
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 35566777899999999999999999865433
No 141
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.64 E-value=2 Score=38.56 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhh
Q 036740 3 QQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRR 48 (424)
Q Consensus 3 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (424)
|.++|||++.-=-+. |.--+..|+++|.+.| +|+++.|...+.-
T Consensus 2 ~~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 2 QDKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 347899886654222 2334778899998888 7999998766543
No 142
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=91.49 E-value=3.5 Score=37.83 Aligned_cols=129 Identities=14% Similarity=0.095 Sum_probs=75.4
Q ss_pred EEecccccCCHHHHHHHHHHHHh---cCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhC-CCeEEe-cccch---hhh
Q 036740 280 VAFGTICVLEKRQVEEIARGLLD---SGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELN-EKGMIV-PWCSQ---VEV 351 (424)
Q Consensus 280 vs~GS~~~~~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~n~~v~-~~~pq---~~l 351 (424)
|=+|-.+..+. .-.++++++.. .+.+++.-++-+ ..++++ -+.|.+.-.+-.+ +|+.+. +++|. ..+
T Consensus 149 IlvGNSgd~SN-~Hie~L~~l~~~~~~~v~ii~PlsYp-~gn~~Y---i~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~l 223 (322)
T PRK02797 149 ILVGNSGDRSN-RHIEALRALHQQFGDNVKIIVPMGYP-ANNQAY---IEEVRQAGLALFGAENFQILTEKLPFDDYLAL 223 (322)
T ss_pred EEEeCCCCCcc-cHHHHHHHHHHHhCCCeEEEEECCcC-CCCHHH---HHHHHHHHHHhcCcccEEehhhhCCHHHHHHH
Confidence 33465553333 23344555543 345666666553 222111 1111122222334 688876 88874 669
Q ss_pred hccccceeeecc--cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHh
Q 036740 352 LSHEAVGCFVTH--CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRC 421 (424)
Q Consensus 352 L~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~a 421 (424)
|+.|+++.|+|+ =|.||++-.++.|||.++-- +-+.|.. +.+ .|+-+-.+.. .++...+.++
T Consensus 224 L~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~d---~L~~~~v~e~ 287 (322)
T PRK02797 224 LRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTGD---DLDEDIVREA 287 (322)
T ss_pred HHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecCC---cccHHHHHHH
Confidence 999999888886 58999999999999999853 3444444 333 5776654443 5676666554
No 143
>PRK14098 glycogen synthase; Provisional
Probab=89.86 E-value=2.1 Score=42.76 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=49.8
Q ss_pred HHhCCCeEEecccchh---hhhccccceeeeccc---Ch-hHHHHHHhcCCcEeeccccc--chhHHHHHHHhhhcceeE
Q 036740 334 EELNEKGMIVPWCSQV---EVLSHEAVGCFVTHC---GW-SSSLESLVYGVPVVAFPQWT--DQGTNAKIIVDFCKTGVR 404 (424)
Q Consensus 334 ~~~~~n~~v~~~~pq~---~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~ 404 (424)
+..++++.+...++.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |.-.+ ...+ -+-|..
T Consensus 358 ~~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~-~~~G~l 432 (489)
T PRK14098 358 EEHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSED-KGSGFI 432 (489)
T ss_pred HHCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCC-CCceeE
Confidence 3445788888888874 57888888 77543 33 36789999999888866432 21110 1112 356766
Q ss_pred eeecCCCccchHHHHHhhh
Q 036740 405 VKANEEGIVESDEINRCLE 423 (424)
Q Consensus 405 l~~~~~~~~~~~~l~~ai~ 423 (424)
.+. -+.++++++|.
T Consensus 433 ~~~-----~d~~~la~ai~ 446 (489)
T PRK14098 433 FHD-----YTPEALVAKLG 446 (489)
T ss_pred eCC-----CCHHHHHHHHH
Confidence 664 35666666653
No 144
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.60 E-value=2 Score=35.38 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSD 66 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~ 66 (424)
.+|+|.+...|+-|-..-++.++..|.++|++|-=+-++.-.+--.. .||+.+.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR-----IGFKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE-----eeeEEEEccC
Confidence 46899999999999999999999999999999976655555544444 7888888863
No 145
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=88.69 E-value=0.75 Score=36.67 Aligned_cols=44 Identities=25% Similarity=0.212 Sum_probs=37.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
|||++.-+|+.+=.. ...+.++|.++|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 689999888876666 99999999999999999999988877766
No 146
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=88.54 E-value=5 Score=33.70 Aligned_cols=111 Identities=9% Similarity=0.051 Sum_probs=56.7
Q ss_pred EcCCCccChHHHHHHHHHH-HhCC-CEEEEEECccch--hh---hcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHH
Q 036740 12 LTFPIQGHINPSLQFARRL-TRIG-TRVTFAIAISAY--RR---MANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMS 84 (424)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L-~~rG-h~Vt~~~~~~~~--~~---i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
+-.++.||+.=++.|.+.+ .++. ++..+++..+.. .+ +++... ....+..+|...... ..+..
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~--~~~~~~~~~r~r~v~--------q~~~~ 72 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS--KRHKILEIPRAREVG--------QSYLT 72 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc--ccceeeccceEEEec--------hhhHh
Confidence 3456899999999999999 4444 444445543322 11 111100 111333333221111 11122
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc--hhHHHHHHHc------CCCcEEEe
Q 036740 85 EFKRRSSEALAELITASQNEGGQPFTCLVYPQLL--PWAAEVARAY------HLPSALLW 136 (424)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~--~~~~~~A~~l------giP~v~~~ 136 (424)
.........+. .+..+... +||+||+..-. .....+|..+ |.+.|.+-
T Consensus 73 ~~~~~l~~~~~-~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 73 SIFTTLRAFLQ-SLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred hHHHHHHHHHH-HHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 22222222221 12222333 89999987655 4567788888 88888763
No 147
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=88.49 E-value=0.93 Score=35.42 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=28.3
Q ss_pred CeEEEEcCCCcc---ChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 7 PHFLLLTFPIQG---HINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 7 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
|||+|+.-|-.+ .-...+.|+.+..+|||+|.++......
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 688888887554 3456889999999999999999877544
No 148
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=88.15 E-value=9 Score=37.45 Aligned_cols=145 Identities=13% Similarity=0.258 Sum_probs=80.9
Q ss_pred HhhhhcCCCCCceEEEEecccccC------C-H---HHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHH--HHH
Q 036740 265 YMEWLSSKPKSSVIYVAFGTICVL------E-K---RQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVM--MKY 332 (424)
Q Consensus 265 ~~~~l~~~~~~~vvyvs~GS~~~~------~-~---~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~--~~~ 332 (424)
+..|+...+++++|-|+.-..... . . +.+..+++.+...++++++..... +.+ ...++|++ ..+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~-~~~---~~~~dD~~~~~~l 299 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCT-GID---SYNKDDRMVALNL 299 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEeccc-Ccc---CCCCchHHHHHHH
Confidence 345555434455787876543311 1 1 223345555555688877654321 110 00111221 334
Q ss_pred HHHhC--CCeEEe--cccchh--hhhccccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeE-e
Q 036740 333 KEELN--EKGMIV--PWCSQV--EVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVR-V 405 (424)
Q Consensus 333 ~~~~~--~n~~v~--~~~pq~--~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~-l 405 (424)
.+.+. ++..+. ++-+.+ .+++++++ +|.. =.-++.-|+..|||.|.++. | +-...-+.+ +|..-. .
T Consensus 300 ~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~ 372 (426)
T PRK10017 300 RQHVSDPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAI 372 (426)
T ss_pred HHhcccccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEe
Confidence 44443 334443 333443 68888888 8864 33477789999999999997 3 444445577 888855 4
Q ss_pred eecCCCccchHHHHHhhh
Q 036740 406 KANEEGIVESDEINRCLE 423 (424)
Q Consensus 406 ~~~~~~~~~~~~l~~ai~ 423 (424)
+.. .++.++|.+.++
T Consensus 373 ~~~---~l~~~~Li~~v~ 387 (426)
T PRK10017 373 DIR---HLLDGSLQAMVA 387 (426)
T ss_pred chh---hCCHHHHHHHHH
Confidence 554 677777776654
No 149
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=87.75 E-value=1.2 Score=42.08 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=46.3
Q ss_pred CCCeEEecccchhhhh---ccccceeeecc-------cCh------hHHHHHHhcCCcEeecccccchhHHHHHHHhhhc
Q 036740 337 NEKGMIVPWCSQVEVL---SHEAVGCFVTH-------CGW------SSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCK 400 (424)
Q Consensus 337 ~~n~~v~~~~pq~~lL---~~~~~~~~I~H-------gG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G 400 (424)
.+|+.+.+|+|++++. +. +.+++... +.+ +-+.+++++|+|+|+. ++...+..|++ .+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~-~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVE-NG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHh-CC
Confidence 3799999999997764 33 43333221 111 2377889999999985 45778899998 89
Q ss_pred ceeEee
Q 036740 401 TGVRVK 406 (424)
Q Consensus 401 ~G~~l~ 406 (424)
+|+.++
T Consensus 280 ~G~~v~ 285 (333)
T PRK09814 280 LGFVVD 285 (333)
T ss_pred ceEEeC
Confidence 999987
No 150
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=87.54 E-value=24 Score=32.85 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=40.6
Q ss_pred cchhhhhccccceeeecccCh-hHHHHHHhcCCcEeecccccchhH----HHHHHHhhhcceeEeee
Q 036740 346 CSQVEVLSHEAVGCFVTHCGW-SSSLESLVYGVPVVAFPQWTDQGT----NAKIIVDFCKTGVRVKA 407 (424)
Q Consensus 346 ~pq~~lL~~~~~~~~I~HgG~-gs~~eal~~GvP~v~~P~~~DQ~~----na~rv~~~~G~G~~l~~ 407 (424)
=|+...|+.++. +|.=+.. +=+.||+..|+|+.+++... +.. -.+.+++ .|+-..++.
T Consensus 220 nPy~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~ 282 (311)
T PF06258_consen 220 NPYLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTG 282 (311)
T ss_pred CcHHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCC
Confidence 367788988887 6666666 55679999999999999876 322 2344555 566555543
No 151
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.70 E-value=12 Score=33.51 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=28.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
||||+.-= ..=|.--+..|+++|.+.| +|+++.|...+.-...
T Consensus 1 M~ILltND-DGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ 43 (244)
T TIGR00087 1 MKILLTND-DGIHSPGIRALYQALKELG-EVTVVAPARQRSGTGH 43 (244)
T ss_pred CeEEEECC-CCCCCHhHHHHHHHHHhCC-CEEEEeCCCCcccccc
Confidence 56664432 2223334678899999988 8999998876654433
No 152
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=86.39 E-value=6.2 Score=34.34 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=32.2
Q ss_pred CeEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 7 PHFLLLTF--PIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.+|.+++. ++-|...-.-+|+-+|+++|++|.++-.+-
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 36777777 477999999999999999999999997653
No 153
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.42 E-value=9.1 Score=34.77 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=35.3
Q ss_pred CCeE-EecccchhhhhccccceeeecccChhHHHHHHhcCCcEeecccc
Q 036740 338 EKGM-IVPWCSQVEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 338 ~n~~-v~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 385 (424)
.++. +.+-++-.++|.+++. +||-.+ .+-.||+.+|+|++++...
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecCc
Confidence 3444 4477888899999999 888844 4778999999999997743
No 154
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.12 E-value=18 Score=31.26 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=61.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHH-HHHHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKH-YMSEF 86 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (424)
=|++...|+.|.....-.||++|.+++|+|.-++.+... .+-. ++.. ....+ +.+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~-~i~~-----------------DEsl----pi~ke~yres~ 60 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR-GILW-----------------DESL----PILKEVYRESF 60 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh-heec-----------------cccc----chHHHHHHHHH
Confidence 355666699999999999999999999999877643222 1111 0000 00022 23333
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchh------HHHHHHHcCCCcEEEechhhH
Q 036740 87 KRRSSEALAELITASQNEGGQPFTCLVYPQLLPW------AAEVARAYHLPSALLWLQPAL 141 (424)
Q Consensus 87 ~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~------~~~~A~~lgiP~v~~~~~~~~ 141 (424)
.......+.+.+ +--+||+|..-+. ....|..+..++..+..-.+.
T Consensus 61 ~ks~~rlldSal---------kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~pl 112 (261)
T COG4088 61 LKSVERLLDSAL---------KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPL 112 (261)
T ss_pred HHHHHHHHHHHh---------cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCH
Confidence 333222222222 3368999977643 456788899999887554443
No 155
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=84.01 E-value=5.5 Score=35.91 Aligned_cols=37 Identities=22% Similarity=0.104 Sum_probs=31.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA 45 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (424)
++|..-|+-|...-..++|..++++|++|.++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3444458999999999999999999999999987654
No 156
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.78 E-value=19 Score=33.68 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=74.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHh---cCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhC-CCeEEe-cccch---
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLD---SGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELN-EKGMIV-PWCSQ--- 348 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~n~~v~-~~~pq--- 348 (424)
.+.|=.|-.+..+.+. .++++.+.. .+.+++.-++-+ +..++ .-+.|...-.+..+ +|+.+. +++|.
T Consensus 185 ~ltILvGNSgd~sNnH-ieaL~~L~~~~~~~~kIivPLsYg-~~n~~---Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eY 259 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNH-IEALEALKQQFGDDVKIIVPLSYG-ANNQA---YIQQVIQAGKELFGAENFQILTEFMPFDEY 259 (360)
T ss_pred ceEEEEcCCCCCCccH-HHHHHHHHHhcCCCeEEEEECCCC-CchHH---HHHHHHHHHHHhcCccceeEhhhhCCHHHH
Confidence 3445557655433332 333444443 345666666554 22111 11001121112223 477665 78885
Q ss_pred hhhhccccceeeecc--cChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHh
Q 036740 349 VEVLSHEAVGCFVTH--CGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRC 421 (424)
Q Consensus 349 ~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~a 421 (424)
.++|+.|+++.|.|. =|.|+++-.|+.|||.++-- +-+.+-. +.+ .|+=+.-..+ .++...|+++
T Consensus 260 l~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~~-l~~-~~ipVlf~~d---~L~~~~v~ea 326 (360)
T PF07429_consen 260 LALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQD-LKE-QGIPVLFYGD---ELDEALVREA 326 (360)
T ss_pred HHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHHH-HHh-CCCeEEeccc---cCCHHHHHHH
Confidence 568999999887774 59999999999999998742 3343333 343 4665544433 6777777665
No 157
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=83.77 E-value=11 Score=33.55 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=30.3
Q ss_pred CeEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 7 PHFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 7 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
.+|++.+. |+-|-..=.-+||..|++.|++|..+=-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 35666665 7889999999999999999999988853
No 158
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=83.46 E-value=1.9 Score=32.15 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 036740 23 SLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELITASQ 102 (424)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 102 (424)
++++|+.|.+.|++ +++++...+.+.+ .|++...+.+........ + ... ++++.+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~-----~Gi~~~~v~~~~~~~~~~--~--g~~-------------~i~~~i~ 57 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKE-----HGIEVTEVVNKIGEGESP--D--GRV-------------QIMDLIK 57 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHH-----TT--EEECCEEHSTG-GG--T--HCH-------------HHHHHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHH-----cCCCceeeeeecccCccC--C--chh-------------HHHHHHH
Confidence 57899999999966 4566666777888 899876664322111000 0 001 4445555
Q ss_pred hcCCCCeeEEEeCCCchh---------HHHHHHHcCCCcE
Q 036740 103 NEGGQPFTCLVYPQLLPW---------AAEVARAYHLPSA 133 (424)
Q Consensus 103 ~~~~~~~D~vv~D~~~~~---------~~~~A~~lgiP~v 133 (424)
+. +.|+||....... -..+|..++||++
T Consensus 58 ~~---~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 58 NG---KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp TT---SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred cC---CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 43 9999997654321 2567778888875
No 159
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=83.22 E-value=24 Score=31.96 Aligned_cols=41 Identities=10% Similarity=-0.024 Sum_probs=27.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
|||++.-=-+. |.--+..|+++|.+.| +|+++.|...+.-.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 45555443222 4455778999998888 79999987765433
No 160
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.19 E-value=7.4 Score=35.08 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=25.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
|||+++..-+. -..|++.|.++||+|+..+...+..
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~ 36 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGK 36 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCcc
Confidence 56666654232 5689999999999999888665543
No 161
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=82.68 E-value=25 Score=31.61 Aligned_cols=39 Identities=13% Similarity=-0.027 Sum_probs=25.9
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
|||++.-=-+. |.--+..|+++|.+ +|+|+++.|...+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 56666543222 22237788999965 68999999877664
No 162
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.24 E-value=3.5 Score=33.23 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
++.+|++.+.++-+|-.-..-++..|.++|++|+++....-.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~ 43 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQ 43 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 467899999999999999999999999999999999865433
No 163
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=81.55 E-value=27 Score=31.36 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=27.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
||||+.-=-+. |.--+..|+++|.+. |+|+++.|...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~ 41 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGA 41 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCC
Confidence 55655543222 333477889999988 799999987766443
No 164
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=81.44 E-value=16 Score=26.74 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 036740 23 SLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELITASQ 102 (424)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 102 (424)
++.+++.|.+.|++| ++|. .....++. .|+.+..+......+ . ..+++.+.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~-----~Gi~~~~~~~ki~~~------~----------------~~i~~~i~ 52 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLRE-----AGLPVKTLHPKVHGG------I----------------LAILDLIK 52 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHH-----CCCcceeccCCCCCC------C----------------HHHHHHhc
Confidence 468999999999998 4554 45667777 787653211111010 0 02444444
Q ss_pred hcCCCCeeEEEeCCC---------chhHHHHHHHcCCCcE
Q 036740 103 NEGGQPFTCLVYPQL---------LPWAAEVARAYHLPSA 133 (424)
Q Consensus 103 ~~~~~~~D~vv~D~~---------~~~~~~~A~~lgiP~v 133 (424)
.. ++|+||.-.. .+....+|...+||++
T Consensus 53 ~g---~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 53 NG---EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CC---CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 43 8999997432 1235677888899976
No 165
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=81.33 E-value=32 Score=30.91 Aligned_cols=40 Identities=10% Similarity=-0.079 Sum_probs=26.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhh
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRR 48 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (424)
||||+.-=-+. |.--+..|+++|.+ +|+|+++.|...+.-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 56665543322 33346788888965 689999998776643
No 166
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=80.32 E-value=3.1 Score=36.89 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=26.9
Q ss_pred CeEEEEcCCCccChHHH------------HHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPS------------LQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~ 43 (424)
|||++.+.|++-.+.|. .+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 56666666666554442 47889999999999999743
No 167
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=80.28 E-value=44 Score=30.06 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=28.7
Q ss_pred cccchhhhhccccceeeecccCh-hHHHHHHhcCCcEee
Q 036740 344 PWCSQVEVLSHEAVGCFVTHCGW-SSSLESLVYGVPVVA 381 (424)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG~-gs~~eal~~GvP~v~ 381 (424)
++=|+-+.|+.++. +|.-... |-++||.+.|+|+.+
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~ 270 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFI 270 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEE
Confidence 45589999988887 7666665 677899999999955
No 168
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=79.91 E-value=13 Score=33.20 Aligned_cols=43 Identities=21% Similarity=0.064 Sum_probs=28.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
|||++.-= ..=|.-=+-.|+++|. .+++|+++.|+..+.-...
T Consensus 1 mrILlTND-DGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~ 43 (252)
T COG0496 1 MRILLTND-DGIHAPGIRALARALR-EGADVTVVAPDREQSGASH 43 (252)
T ss_pred CeEEEecC-CccCCHHHHHHHHHHh-hCCCEEEEccCCCCccccc
Confidence 45554332 2234444667888888 9999999999887754433
No 169
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=79.65 E-value=12 Score=33.01 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=24.3
Q ss_pred CeeEEE-eCCCc-hhHHHHHHHcCCCcEEEechh
Q 036740 108 PFTCLV-YPQLL-PWAAEVARAYHLPSALLWLQP 139 (424)
Q Consensus 108 ~~D~vv-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 139 (424)
-||+++ .|... .-+..=|.++|||+|.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 488866 77665 456777889999999986654
No 170
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.40 E-value=3.6 Score=32.07 Aligned_cols=36 Identities=22% Similarity=0.040 Sum_probs=32.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
||++.+.++-.|.....-++..|.++|++|++....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 588999999999999999999999999999888754
No 171
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=79.39 E-value=32 Score=28.46 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=57.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEE---ECc--cch-hhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFA---IAI--SAY-RRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKH 81 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~---~~~--~~~-~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
-|.+++..+.|-....+.+|-+.+.+|++|.|+ -.. .-. ..+... .++++..+..+..... .+. ..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~---~~~-~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTT---END-EE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCC---CCh-HH
Confidence 367788889999999999999999999999984 332 111 122221 4688877765432211 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCch
Q 036740 82 YMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLP 119 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~ 119 (424)
-.......++...+.+.. ..+|+||-|-...
T Consensus 76 ----~~~~a~~~~~~a~~~~~~---~~~dLlVLDEi~~ 106 (159)
T cd00561 76 ----DIAAAAEGWAFAKEAIAS---GEYDLVILDEINY 106 (159)
T ss_pred ----HHHHHHHHHHHHHHHHhc---CCCCEEEEechHh
Confidence 112223333333344433 3899999997653
No 172
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.77 E-value=17 Score=33.86 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh--------hhcCCCCCCCCceEEEc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR--------RMANNPTPEDGLSFASF 64 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--------~i~~~~~~~~gi~~~~~ 64 (424)
++--|+|+..-+.|-..-.-.||..|.+.|+.|.++..+.|++ +.++ .|+.++.-
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er-----~gv~vI~~ 200 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER-----LGVPVISG 200 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH-----hCCeEEcc
Confidence 4556788888999999999999999999999999999988774 4444 66766543
No 173
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=77.63 E-value=4.2 Score=34.92 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+.+||++.-+|+.|=+.-...++++|.++||+|.++.++...+.+..
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~~ 50 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTR 50 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhhh
Confidence 45678777776554433369999999999999999998877665443
No 174
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=77.61 E-value=4.6 Score=34.79 Aligned_cols=42 Identities=17% Similarity=0.049 Sum_probs=31.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
||||+.-=-+. +.--+..|+++|.+.||+|+++.|...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 67777766555 4455788999998888999999998776543
No 175
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=77.15 E-value=36 Score=28.63 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=59.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEE---ECcc---chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFA---IAIS---AYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRK 80 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~---~~~~---~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 80 (424)
--|.+++..+.|-..-.+.+|-+.+.+|++|.++ -... -...++. .++++.....++.... .+. .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-----~~~~~~~~g~g~~~~~---~~~-~ 76 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-----HGVEFQVMGTGFTWET---QNR-E 76 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-----cCcEEEECCCCCeecC---CCc-H
Confidence 3477778899999999999999999999999655 3331 1123344 4788887776543222 122 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc
Q 036740 81 HYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLL 118 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~ 118 (424)
... ......+....+.+.+. .+|+||-|-..
T Consensus 77 ~~~----~~~~~~~~~a~~~l~~~---~~DlvVLDEi~ 107 (173)
T TIGR00708 77 ADT----AIAKAAWQHAKEMLADP---ELDLVLLDELT 107 (173)
T ss_pred HHH----HHHHHHHHHHHHHHhcC---CCCEEEehhhH
Confidence 111 12333444444444443 89999999655
No 176
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=77.02 E-value=2.3 Score=36.25 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=24.6
Q ss_pred CeEEEEcCCCccChHH------------HHHHHHHHHhCCCEEEEEECcc
Q 036740 7 PHFLLLTFPIQGHINP------------SLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.||++.+.|++-++.| -..||+++..||++|+++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4555555555544433 3578999999999999999874
No 177
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=76.98 E-value=45 Score=28.52 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=61.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEEC---c--cch-hhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIA---I--SAY-RRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRK 80 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~---~--~~~-~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 80 (424)
-.|.++...+.|-....+.+|-+.+.+|++|.++-. . .-. ..+... .++++.....++.... .+. .
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l----~~v~~~~~g~~~~~~~---~~~-~ 94 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG----GGVEFHVMGTGFTWET---QDR-E 94 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC----CCcEEEECCCCCcccC---CCc-H
Confidence 468899999999999999999999999999988852 1 111 122221 4788887776533221 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc
Q 036740 81 HYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLL 118 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~ 118 (424)
+ -.......+....+.+.+ ..+|+||-|-..
T Consensus 95 e----~~~~~~~~~~~a~~~l~~---~~ydlvVLDEi~ 125 (191)
T PRK05986 95 R----DIAAAREGWEEAKRMLAD---ESYDLVVLDELT 125 (191)
T ss_pred H----HHHHHHHHHHHHHHHHhC---CCCCEEEEehhh
Confidence 1 112233344444444444 389999999665
No 178
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=75.86 E-value=4.1 Score=34.67 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=38.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEECccchhhhcC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTR-IGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~i~~ 51 (424)
++||++.-+|+-| ..-...++++|.+ .||+|.++.++.....+..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 4578888888777 7779999999999 5999999999988887765
No 179
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=75.52 E-value=6.6 Score=39.50 Aligned_cols=41 Identities=10% Similarity=0.271 Sum_probs=32.4
Q ss_pred CCeEEecccc--h-hhhhccccceeeeccc---ChhHHHHHHhcCCcEe
Q 036740 338 EKGMIVPWCS--Q-VEVLSHEAVGCFVTHC---GWSSSLESLVYGVPVV 380 (424)
Q Consensus 338 ~n~~v~~~~p--q-~~lL~~~~~~~~I~Hg---G~gs~~eal~~GvP~v 380 (424)
.++.+.++.. + ..++.++.+ +|.=+ |.++.+||+.+|+|+|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI 455 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI 455 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee
Confidence 4677778888 4 446666666 88655 7789999999999999
No 180
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=75.40 E-value=18 Score=30.43 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=62.8
Q ss_pred ccChHHHHHHHHHH-HhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCC----------CCCCCC--------CCCc
Q 036740 17 QGHINPSLQFARRL-TRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDG----------YDDGFN--------SKQN 77 (424)
Q Consensus 17 ~GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~----------~~~~~~--------~~~~ 77 (424)
.+.+.-.+..|+.| .+.|.+|.+.-+... ..+.+. .++..+.++-. ...... +...
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~ta-~~lr~~----~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~ 90 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGGTA-ELLRKH----VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIP 90 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHHHH-HHHHCC-----SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SC
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCHHH-HHHHHh----CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccH
Confidence 35677788999999 889999988776543 344432 45666665410 001000 0011
Q ss_pred chHHHHHHHHHH--------HHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechhhH
Q 036740 78 DRKHYMSEFKRR--------SSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQPAL 141 (424)
Q Consensus 78 ~~~~~~~~~~~~--------~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 141 (424)
. ...+..++.. ....++..++++... +.|+||.+. ....+|+++|+|++.+.++.-.
T Consensus 91 ~-~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~---G~~viVGg~---~~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 91 G-LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE---GVDVIVGGG---VVCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp C-HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT---T--EEEESH---HHHHHHHHTTSEEEESS--HHH
T ss_pred H-HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc---CCcEEECCH---HHHHHHHHcCCcEEEEEecHHH
Confidence 1 1222222221 245677788888776 899999995 3579999999999998775543
No 181
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=75.04 E-value=15 Score=35.96 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=27.3
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
|+ ++||||++..+++-| +||++|.+.++-..+++
T Consensus 1 ~~--~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~ 34 (426)
T PRK13789 1 MQ--VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKV 34 (426)
T ss_pred CC--CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 66 789999999999888 58999999885444444
No 182
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=74.79 E-value=4.6 Score=34.33 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
++||++.-+|+-|=. -...+.+.|+++|++|.++.++...+++..
T Consensus 1 ~k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 357888877766655 489999999999999999999887776653
No 183
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=74.67 E-value=15 Score=33.74 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
+.-+|.+...|+-|--.-.=.|.+.|.++||+|-++.-+...
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 455788888999999999999999999999999999866544
No 184
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=74.30 E-value=17 Score=35.52 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=22.3
Q ss_pred CeeEEEeCCCchhHHHHHHHcCCCcEEEe
Q 036740 108 PFTCLVYPQLLPWAAEVARAYHLPSALLW 136 (424)
Q Consensus 108 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 136 (424)
+||++|.. ..+..+|+++|||.+.+.
T Consensus 350 ~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 350 RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 99999988 347789999999999863
No 185
>PRK10867 signal recognition particle protein; Provisional
Probab=74.04 E-value=23 Score=34.62 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=36.4
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEECccchh
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRI-GTRVTFAIAISAYR 47 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~ 47 (424)
+.-|+++..++-|-..-+..||..|+++ |+.|.+++.+.++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 4556777778999999999999999999 99999999886654
No 186
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=74.01 E-value=38 Score=29.28 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=33.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEECcc----chhhhcCCCCCCCCceEEEcC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIG--TRVTFAIAIS----AYRRMANNPTPEDGLSFASFS 65 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~----~~~~i~~~~~~~~gi~~~~~~ 65 (424)
||||+++..+..+-+. ++.+++.+.+ ++|.++.+.. ..+...+ .|+.+..++
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~ 58 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLD 58 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEEC
Confidence 5899999997754444 5555676654 7888765443 2234444 788877664
No 187
>PRK05920 aromatic acid decarboxylase; Validated
Probab=73.96 E-value=5 Score=34.73 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+++||++.-+|+.+= .-.+.+.+.|.+.||+|.++.++.....+..
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 357788777765554 6899999999999999999999887776643
No 188
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.43 E-value=22 Score=34.39 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
++..|+++..=+.|-..-+-.||+-|.++|+.|.+++.+.+++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 4667888888899999999999999999999999999887663
No 189
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=73.18 E-value=5.3 Score=37.11 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=34.3
Q ss_pred CeEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 7 PHFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 7 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
||++|+.. |+-|-..-..++|-.++++|++|.+++++..+.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 57777777 788999999999999999999999999887664
No 190
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=72.96 E-value=13 Score=30.87 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=29.7
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 9 FLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 9 il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
|++.+. |+-|-..-...||..|+++|++|.++=.+.
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 444444 788999999999999999999999986543
No 191
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=72.59 E-value=30 Score=33.88 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEECccchh
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLT-RIGTRVTFAIAISAYR 47 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~ 47 (424)
+..++++..++-|-..-+..||..|. ++|.+|.+++.+.++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 44567777789999999999999997 5899999999886654
No 192
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=72.45 E-value=7.5 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEE
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFA 40 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 40 (424)
..-++++..+...|...+-.+|+.|+++|..|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 36688889999999999999999999999998754
No 193
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=72.17 E-value=36 Score=31.01 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA 45 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (424)
+..|+|+..++-|-..-+..||..|+++|++|.++..+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3456777778999999999999999999999999998754
No 194
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=71.79 E-value=7.5 Score=38.21 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=56.8
Q ss_pred ccChHHHHHHHHHHHh--------CCC----EEEEEE---Ccc----chhhhcCCCCCCCCceEEEcCCCCCC----CCC
Q 036740 17 QGHINPSLQFARRLTR--------IGT----RVTFAI---AIS----AYRRMANNPTPEDGLSFASFSDGYDD----GFN 73 (424)
Q Consensus 17 ~GH~~p~l~La~~L~~--------rGh----~Vt~~~---~~~----~~~~i~~~~~~~~gi~~~~~~~~~~~----~~~ 73 (424)
.|.+.-.+.+|++|.+ .|- +|.++| ++. +...++..... .+...+.+|=+-.. ...
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt-~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGT-ENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTE-SSEEEEEE-ESESTEEE-S--
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCC-CCcEEEEecCCCCcchhhhcc
Confidence 3667778899999865 254 365555 221 11222221111 45555555522211 122
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc--hhHHHHHHHcCCCcEEEec
Q 036740 74 SKQNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLL--PWAAEVARAYHLPSALLWL 137 (424)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~--~~~~~~A~~lgiP~v~~~~ 137 (424)
+.-+. +.+++.|..... ..+.+++ ..+||+|+..+.. ..|..+++++|+|.+.+-.
T Consensus 375 srf~l-WPyLe~fa~d~~---~~i~~e~----~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaH 432 (550)
T PF00862_consen 375 SRFDL-WPYLEEFADDAE---REILAEL----QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAH 432 (550)
T ss_dssp -GGG--GGGHHHHHHHHH---HHHHHHH----TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-S
T ss_pred chhhc-hhhHHHHHHHHH---HHHHHHh----CCCCcEEEeccCcchHHHHHHHhhcCCceehhhh
Confidence 22344 666666655433 3333333 3489999977433 5678999999999988643
No 195
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=71.13 E-value=15 Score=32.95 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=26.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMA 50 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 50 (424)
|||+++..-+-| ..||+.|.++|+ |++-+..++...+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~ 38 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELL 38 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhh
Confidence 678887765544 478999999999 66665555555444
No 196
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=71.05 E-value=44 Score=25.46 Aligned_cols=84 Identities=11% Similarity=0.177 Sum_probs=55.0
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036740 18 GHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAEL 97 (424)
Q Consensus 18 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (424)
.+-.-++++++.|.+.|+++ + +++...+.+.. .|+.+..+.... . ++ ..+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~-aT~gT~~~l~~-----~gi~~~~v~~~~-~-----~~-----------------~~i 59 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-V-ATEGTAKYLQE-----AGIPVEVVNKVS-E-----GR-----------------PNI 59 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-E-EchHHHHHHHH-----cCCeEEEEeecC-C-----Cc-----------------hhH
Confidence 35567889999999999998 3 44556667777 788765543211 0 01 123
Q ss_pred HHHHhhcCCCCeeEEEeCCC-------chhHHHHHHHcCCCcEE
Q 036740 98 ITASQNEGGQPFTCLVYPQL-------LPWAAEVARAYHLPSAL 134 (424)
Q Consensus 98 l~~l~~~~~~~~D~vv~D~~-------~~~~~~~A~~lgiP~v~ 134 (424)
.+.+.+ .++|+||.-.. .+.....|-.+|||++.
T Consensus 60 ~~~i~~---~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 60 VDLIKN---GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHc---CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 333333 38999997321 25568889999999985
No 197
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=70.93 E-value=22 Score=34.75 Aligned_cols=89 Identities=10% Similarity=0.007 Sum_probs=51.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc----chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS----AYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYM 83 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~----~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
|+.++..+.. .+.+++.|.+-|-+|..+++.. +.+..... + +.+........+.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~------~------~~~~~~v~~~~dl----- 344 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRW------L------EMLGVEVKYRASL----- 344 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHH------H------HhcCCCceeccCH-----
Confidence 6666666555 8889999999999999886652 22222210 0 0000000000111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEE
Q 036740 84 SEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALL 135 (424)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 135 (424)
.+.++.+.+ .+||++|.... +..+|+++|||.+.+
T Consensus 345 -----------~~~~~~l~~---~~pDllig~s~---~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 345 -----------EDDMEAVLE---FEPDLAIGTTP---LVQFAKEHGIPALYF 379 (422)
T ss_pred -----------HHHHHHHhh---CCCCEEEcCCc---chHHHHHcCCCEEEe
Confidence 111133333 39999998843 667899999999986
No 198
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=69.96 E-value=28 Score=30.79 Aligned_cols=45 Identities=13% Similarity=-0.037 Sum_probs=37.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCC-CEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIG-TRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~i~~ 51 (424)
|+|+++.=++.|-..-.--|+.+|.++| ++|..+=.+.+...-..
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~ 46 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEA 46 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHh
Confidence 6899999999999988888788999887 99999987765554444
No 199
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=69.57 E-value=25 Score=34.53 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=39.0
Q ss_pred CCeEEe-cccc-h-hhhhccccceeeecccCh--hHHHHHHhcCCcEeecc
Q 036740 338 EKGMIV-PWCS-Q-VEVLSHEAVGCFVTHCGW--SSSLESLVYGVPVVAFP 383 (424)
Q Consensus 338 ~n~~v~-~~~p-q-~~lL~~~~~~~~I~HgG~--gs~~eal~~GvP~v~~P 383 (424)
+|+.+. ++.+ + .+++..|++-+-|+||+- .++.||+.+|+|++..=
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd 378 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFE 378 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEe
Confidence 787777 8788 3 679999999999999765 68999999999999754
No 200
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=69.28 E-value=7.1 Score=34.78 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=53.5
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCC-CeEEeccc--c
Q 036740 274 KSSVIYVAFGTIC---VLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNE-KGMIVPWC--S 347 (424)
Q Consensus 274 ~~~vvyvs~GS~~---~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-n~~v~~~~--p 347 (424)
+++.|.+..|+.. ..+.+.+.++++.|...+++++...+.. ..+ +.. .+...+.... .+.+.+-. .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-~~~---~~~----~~~~~~~~~~~~~~~~~~~~l~ 175 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-EQE---KEI----ADQIAAGLQNPVINLAGKTSLR 175 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-HHH---HHH----HHHHHTTHTTTTEEETTTS-HH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-HHH---HHH----HHHHHHhcccceEeecCCCCHH
Confidence 4557777777755 3467788899999988775654433221 100 000 0111111122 23333333 3
Q ss_pred h-hhhhccccceeeecccChhHHHHHHhcCCcEeec
Q 036740 348 Q-VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAF 382 (424)
Q Consensus 348 q-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 382 (424)
+ ..+++++++ +|+. ..|.+.=|.+.|+|+|++
T Consensus 176 e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 176 ELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 3 568889998 8887 788999999999999998
No 201
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.21 E-value=52 Score=29.86 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=66.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEECccchhhhcCCCCCCCCceE-EEcCCCCCCCCCCCCcchHHHHH
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIG--TRVTFAIAISAYRRMANNPTPEDGLSF-ASFSDGYDDGFNSKQNDRKHYMS 84 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~i~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
||+++-..+.|++.-..++.++|+++. -+|++++.+.+.+.++.. +.++- +.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~----p~id~v~~~~~~~-----~~~~~------ 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM----PEVDRVIVLPKKH-----GKLGL------ 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC----CccCEEEEcCCcc-----cccch------
Confidence 689999999999999999999999975 899999999888877763 23322 2222110 00011
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEE
Q 036740 85 EFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSAL 134 (424)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 134 (424)
..+..++.++... ++|+++-=........++...+++...
T Consensus 66 -------~~~~~~~~~l~~~---~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 -------GARRRLARALRRR---RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred -------HHHHHHHHHHhhc---CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1122444555544 899998655555455566677777654
No 202
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=68.92 E-value=9.5 Score=37.66 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCCccChHHH------------HHHHHHHHhCCCEEEEEECccc
Q 036740 5 QQPHFLLLTFPIQGHINPS------------LQFARRLTRIGTRVTFAIAISA 45 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~~~ 45 (424)
+.+||++...|++=.+.|. ..||+++..||++||+++.+..
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 4568898888888777774 4899999999999999997653
No 203
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=68.74 E-value=20 Score=32.46 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=33.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.-+++...|+.|-..-++.++...+++|..|.|++.+.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 44677777899999999999999889999999999874
No 204
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=68.61 E-value=36 Score=31.78 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=24.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|||+|+..+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 789999776544 66668888999999877654
No 205
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.29 E-value=38 Score=33.07 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=36.4
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
+..|+++..++-|-..-+..||..|.++|++|.+++.+.++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 45677888889999999999999999999999999988765
No 206
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=68.10 E-value=26 Score=30.10 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036740 20 INPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELIT 99 (424)
Q Consensus 20 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 99 (424)
+.-.+.+.+.+.++|-+|.|+++......+....+...|..++ ....-.+..+........+..+.......++..+.
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i--~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~ 119 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYV--NGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLG 119 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeee--cCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556677777899999999875443222111000232222 11111121121111011222222111122222222
Q ss_pred HHhhcCCCCeeEEE-eCCCc-hhHHHHHHHcCCCcEEEechh
Q 036740 100 ASQNEGGQPFTCLV-YPQLL-PWAAEVARAYHLPSALLWLQP 139 (424)
Q Consensus 100 ~l~~~~~~~~D~vv-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 139 (424)
.+... ...||+|| .|+.. ..+..=|.++|||.|.+.-+.
T Consensus 120 g~~~~-~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 120 GIKDM-FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccccc-ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 22211 35788877 56544 456777888999999986553
No 207
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=67.53 E-value=24 Score=32.12 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=57.8
Q ss_pred CceEEEEecccc---cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHh-CCCeE-Eecc--cc
Q 036740 275 SSVIYVAFGTIC---VLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEEL-NEKGM-IVPW--CS 347 (424)
Q Consensus 275 ~~vvyvs~GS~~---~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~n~~-v~~~--~p 347 (424)
++.|.+..|+.. ..+.+.+.++++.+...+.++++..+ . ... ..- +.+.+.. ..++. +.+- +.
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~-~-~e~----~~~----~~i~~~~~~~~~~~~~~~~~l~ 190 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGG-P-AER----ELA----EEIAAALGGPRVVNLAGKTSLR 190 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEec-h-hhH----HHH----HHHHHhcCCCccccCcCCCCHH
Confidence 446777777654 45677888899888877777765432 2 111 111 2222222 12222 2222 23
Q ss_pred h-hhhhccccceeeecccChhHHHHHHhcCCcEeec
Q 036740 348 Q-VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAF 382 (424)
Q Consensus 348 q-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 382 (424)
+ ..+++++++ +|+.- .|.+.-|.+.|+|+|++
T Consensus 191 e~~~li~~~~l--~I~~D-sg~~HlA~a~~~p~i~l 223 (279)
T cd03789 191 ELAALLARADL--VVTND-SGPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHHHhCCE--EEeeC-CHHHHHHHHcCCCEEEE
Confidence 3 568888998 99984 47777778999999886
No 208
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=66.92 E-value=55 Score=25.08 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036740 19 HINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELI 98 (424)
Q Consensus 19 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (424)
+=.-++.+|+.|.+.|+++ ++++.....+.. .|+.+..+-..- .+ ++ ..+.
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~~-~~----g~-----------------~~i~ 60 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLAD-----AGIPVRAVSKRH-ED----GE-----------------PTVD 60 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHH-----cCCceEEEEecC-CC----CC-----------------cHHH
Confidence 4456789999999999998 355566667777 788776553221 10 11 1223
Q ss_pred HHHhh-cCCCCeeEEEe--CCC--------chhHHHHHHHcCCCcEE
Q 036740 99 TASQN-EGGQPFTCLVY--PQL--------LPWAAEVARAYHLPSAL 134 (424)
Q Consensus 99 ~~l~~-~~~~~~D~vv~--D~~--------~~~~~~~A~~lgiP~v~ 134 (424)
+.+.+ . ++|+||. |.. .+....+|...+||++.
T Consensus 61 ~~i~~~g---~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 61 AAIAEKG---KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHhCCC---CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 33333 3 8899885 322 13356778899999987
No 209
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.73 E-value=9.8 Score=34.32 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+...++|+..++.|-..=..+|+.+|.++|+.|+|++.+++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 34578999999999999999999999999999999999888777665
No 210
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=66.63 E-value=38 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=24.2
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEE
Q 036740 14 FPIQGHINPSLQFARRLTRIGTRVTFA 40 (424)
Q Consensus 14 ~~~~GH~~p~l~La~~L~~rGh~Vt~~ 40 (424)
.++-|...-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 356788999999999999999999886
No 211
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.51 E-value=26 Score=33.37 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
++.-|+|+..-+.|...-|-.+|-.+.++|+.+-++|.+.|+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 556788888889999999999999999999999999988776
No 212
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=66.30 E-value=36 Score=28.81 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=24.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCE--EEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTR--VTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~~ 43 (424)
|||+|+.++.. ..+..+.++|.+++|+ |..+.+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEES
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecc
Confidence 78999977655 4456667889999997 5444433
No 213
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=65.68 E-value=13 Score=34.63 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEE
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFAS 63 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~ 63 (424)
.+|||+++..|+.| .-+|..|++.||+|+++.... .+.+.. .|+.+..
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~-----~g~~~~~ 51 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVRE-----NGLQVDS 51 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHh-----CCeEEEe
Confidence 45899999888877 356788999999999998765 344545 5665543
No 214
>PRK14098 glycogen synthase; Provisional
Probab=65.51 E-value=9.4 Score=38.18 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCC------ccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 5 QQPHFLLLTFPI------QGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 5 ~~~~il~~~~~~------~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
++|||++++.-. .|=-.-+-.|.++|+++||+|.++.|.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 569999998632 233344667889999999999999974
No 215
>PRK14099 glycogen synthase; Provisional
Probab=64.69 E-value=10 Score=37.83 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCC------ccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 5 QQPHFLLLTFPI------QGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 5 ~~~~il~~~~~~------~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
++|||++++.-. .|=..-+-.|.++|+++||+|.++.|.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 579999998632 233344567888899999999999974
No 216
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=64.40 E-value=11 Score=34.83 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
|||+++..|+.| ..+|..|+++||+|+++..+...+.+..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHh
Confidence 689999887776 4578889999999999987444444555
No 217
>PRK14099 glycogen synthase; Provisional
Probab=64.34 E-value=44 Score=33.41 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCCe-EEecccchh-hhh-ccccceeeec---ccChh-HHHHHHhcCCcEeeccccc--chhHHHHHHHhh--hcceeEe
Q 036740 337 NEKG-MIVPWCSQV-EVL-SHEAVGCFVT---HCGWS-SSLESLVYGVPVVAFPQWT--DQGTNAKIIVDF--CKTGVRV 405 (424)
Q Consensus 337 ~~n~-~v~~~~pq~-~lL-~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~--~G~G~~l 405 (424)
+.++ .+.+|-.+. .++ +.+++ ||. +=|.| +.+||+++|+|.|+....+ |--.......+. -+.|+.+
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4555 345763332 233 34676 775 44554 6789999998777654322 311111111110 1567777
Q ss_pred eecCCCccchHHHHHhhh
Q 036740 406 KANEEGIVESDEINRCLE 423 (424)
Q Consensus 406 ~~~~~~~~~~~~l~~ai~ 423 (424)
+.. +.++|+++|.
T Consensus 427 ~~~-----d~~~La~ai~ 439 (485)
T PRK14099 427 SPV-----TADALAAALR 439 (485)
T ss_pred CCC-----CHHHHHHHHH
Confidence 753 6777777664
No 218
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=64.19 E-value=47 Score=25.60 Aligned_cols=95 Identities=9% Similarity=0.138 Sum_probs=56.3
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHH
Q 036740 10 LLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRR 89 (424)
Q Consensus 10 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
+|++.... +-.-++.+|+.|.+.|++| + +++...+.+.. .|+.+..+......+ +. .
T Consensus 3 vlisv~~~-dk~~~~~~a~~l~~~G~~i-~-aT~gTa~~L~~-----~gi~~~~v~~~~~~~-----~~-~--------- 59 (116)
T cd01423 3 ILISIGSY-SKPELLPTAQKLSKLGYKL-Y-ATEGTADFLLE-----NGIPVTPVAWPSEEP-----QN-D--------- 59 (116)
T ss_pred EEEecCcc-cchhHHHHHHHHHHCCCEE-E-EccHHHHHHHH-----cCCCceEeeeccCCC-----CC-C---------
Confidence 34444444 5556889999999999998 3 45555666666 677665543211000 00 0
Q ss_pred HHHHHHHHHHHHhhcCCCCeeEEEeCCC---------chhHHHHHHHcCCCcEE
Q 036740 90 SSEALAELITASQNEGGQPFTCLVYPQL---------LPWAAEVARAYHLPSAL 134 (424)
Q Consensus 90 ~~~~~~~~l~~l~~~~~~~~D~vv~D~~---------~~~~~~~A~~lgiP~v~ 134 (424)
.. .+++.+.+ .++|+||.-.. .+.....|-.+|||++.
T Consensus 60 -~~---~i~~~i~~---~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -KP---SLRELLAE---GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -ch---hHHHHHHc---CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 01 22233333 38999997322 24467889999999974
No 219
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.65 E-value=22 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=32.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
.|+++...+...|-.-..-++..|.++||+|.++-..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 3788999999999999999999999999999998544
No 220
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=63.56 E-value=87 Score=28.53 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=57.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHH
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKR 88 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424)
|+++..|+-|-..-...|++.|.+.|.+|.++..+... +.. ..+. + ....+.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~-----~~y~----------------~--~~~Ek~--- 55 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDR-----NDYA----------------D--SKKEKE--- 55 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TT-----SSS--------------------GGGHHH---
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cch-----hhhh----------------c--hhhhHH---
Confidence 67788899999999999999999999999999854444 222 1110 0 011112
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeEEEeCCCch------hHHHHHHHcCCCcEEEechhhHHHHH
Q 036740 89 RSSEALAELITASQNEGGQPFTCLVYPQLLP------WAAEVARAYHLPSALLWLQPALVFDV 145 (424)
Q Consensus 89 ~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~------~~~~~A~~lgiP~v~~~~~~~~~~~~ 145 (424)
.+..+...++.... +-++||+|...+ ....+|+.++.+++.++...+.-.+.
T Consensus 56 -~R~~l~s~v~r~ls----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~ 113 (270)
T PF08433_consen 56 -ARGSLKSAVERALS----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCL 113 (270)
T ss_dssp -HHHHHHHHHHHHHT----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHH
T ss_pred -HHHHHHHHHHHhhc----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHH
Confidence 22233333333322 338999997763 35789999999999876665544443
No 221
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=63.41 E-value=9.2 Score=35.33 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=30.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEEC-ccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIA-ISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~-~~~~~~i~~ 51 (424)
|||+++..|+.| ..+|..|++.||+|+++.. ++..+.+..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHH
Confidence 678888877766 4678889999999999986 344444554
No 222
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=63.22 E-value=85 Score=28.41 Aligned_cols=27 Identities=7% Similarity=-0.148 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhC---CCEEEEEECccchhh
Q 036740 22 PSLQFARRLTRI---GTRVTFAIAISAYRR 48 (424)
Q Consensus 22 p~l~La~~L~~r---Gh~Vt~~~~~~~~~~ 48 (424)
-+..|+++|.+. |++|+++.|+..+.-
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg 44 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSG 44 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 356677777763 479999998776643
No 223
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=62.85 E-value=14 Score=29.88 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
++.||++.+.+.-||-.-.--+++.|++.|.+|.....-
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 688999999999999999999999999999999887643
No 224
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=62.80 E-value=13 Score=33.28 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHH
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSE 85 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
+++|+++..-+-| ..||+.|.++|+.|++-+...+.. ... .+..... ..+ ++.
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~-----~~~~v~~--G~l-------~~~------- 54 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PAD-----LPGPVRV--GGF-------GGA------- 54 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-ccc-----CCceEEE--CCC-------CCH-------
Confidence 4677777665544 478999999999888776555444 222 2222110 000 011
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeEEE--eCCCch----hHHHHHHHcCCCcEEEec
Q 036740 86 FKRRSSEALAELITASQNEGGQPFTCLV--YPQLLP----WAAEVARAYHLPSALLWL 137 (424)
Q Consensus 86 ~~~~~~~~~~~~l~~l~~~~~~~~D~vv--~D~~~~----~~~~~A~~lgiP~v~~~~ 137 (424)
+.+.++++ + .++++|| +.+|.. -+..+++++|||++.|-.
T Consensus 55 ------~~l~~~l~---~---~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 ------EGLAAYLR---E---EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ------HHHHHHHH---H---CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 12223332 2 3888877 444441 257788899999999743
No 225
>PHA01630 putative group 1 glycosyl transferase
Probab=62.60 E-value=41 Score=31.69 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=28.8
Q ss_pred cccchhh---hhccccceeeec---ccC-hhHHHHHHhcCCcEeecccc
Q 036740 344 PWCSQVE---VLSHEAVGCFVT---HCG-WSSSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 344 ~~~pq~~---lL~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~ 385 (424)
.++|+.+ +++.+++ +|. ..| ..++.||+++|+|.|+.-..
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 4477644 5788888 653 333 45899999999999997643
No 226
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=62.33 E-value=5 Score=33.11 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=27.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
+|.++..|.+|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 577787777776 68999999999999999874
No 227
>PRK05595 replicative DNA helicase; Provisional
Probab=62.30 E-value=42 Score=33.06 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=31.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEECccchh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLT-RIGTRVTFAIAISAYR 47 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~ 47 (424)
+++-..|+.|-..-.+.+|..++ ++|+.|.|++.+-...
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~ 243 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKE 243 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHH
Confidence 45566689999999999998876 5799999999875543
No 228
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=62.03 E-value=14 Score=33.58 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=31.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
|+|+++.=|+-|-..-+..||..|+++|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 67888866899999999999999999999998883
No 229
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=61.67 E-value=56 Score=32.14 Aligned_cols=26 Identities=19% Similarity=0.237 Sum_probs=22.2
Q ss_pred CeeEEEeCCCchhHHHHHHHcCCCcEEEe
Q 036740 108 PFTCLVYPQLLPWAAEVARAYHLPSALLW 136 (424)
Q Consensus 108 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 136 (424)
+||++|.... ...+|+++|+|++.+.
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 8999998853 6889999999999763
No 230
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=61.52 E-value=15 Score=33.83 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=33.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|+|++..=|+-|-..-.+.||..|+++|++|.++=-+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 6799999999999999999999999999999888543
No 231
>PRK04328 hypothetical protein; Provisional
Probab=61.12 E-value=1.2e+02 Score=27.06 Aligned_cols=42 Identities=19% Similarity=0.029 Sum_probs=33.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhh
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRR 48 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (424)
.-+++...|+.|...-.+.++.+-+++|+.+.|++.+...+.
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~ 65 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQ 65 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHH
Confidence 446677778999999999988877788999999998765543
No 232
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=60.88 E-value=11 Score=35.57 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+|||+|+..|..| ..+|..|+++||+|+++......+.+..
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELRA 42 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHHh
Confidence 4789999887777 3578889999999999986544444444
No 233
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=60.73 E-value=20 Score=33.31 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 4 QQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+.+|+|.|+..|..|. .+|+.|.++||+|++....
T Consensus 2 ~~~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 4678999998887774 6899999999999988754
No 234
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=60.73 E-value=13 Score=31.76 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=33.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhh
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRR 48 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (424)
||++.-+|+.|=+.-.+.+.++|.++|++|+++.++.....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~ 42 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTT 42 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHH
Confidence 67777777777666667999999999999999988766543
No 235
>PRK06849 hypothetical protein; Provisional
Probab=60.51 E-value=18 Score=34.90 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
++|+|++.... ....+.+|+.|.++||+|+++....
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67888888543 3368999999999999999997664
No 236
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=59.65 E-value=15 Score=33.19 Aligned_cols=37 Identities=14% Similarity=-0.013 Sum_probs=32.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|.|++..=|+-|...-+..||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6788887789999999999999999999999888433
No 237
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=59.53 E-value=32 Score=33.77 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.0
Q ss_pred CeeEEEeCCCchhHHHHHHHcCCCcEEEe
Q 036740 108 PFTCLVYPQLLPWAAEVARAYHLPSALLW 136 (424)
Q Consensus 108 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 136 (424)
+||+||.+.. ...+|+++|+|++.+.
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 8999999954 5789999999999753
No 238
>PRK09620 hypothetical protein; Provisional
Probab=59.52 E-value=13 Score=32.95 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCccChHH------------HHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTFPIQGHINP------------SLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 43 (424)
.++|++.+.|++=.+.| -..||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35677666665444333 247899999999999999754
No 239
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=59.27 E-value=12 Score=31.87 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=32.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
||++.-+|+-|-. -...+.+.|.++|++|.++.++.....+..
T Consensus 1 ~illgvtGsiaa~-ka~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVI-YGIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 3455555554443 348999999999999999999988887753
No 240
>PRK06988 putative formyltransferase; Provisional
Probab=58.99 E-value=64 Score=30.08 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+|||+|+..+.. .+...+.|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHNV-----GVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcHH-----HHHHHHHHHhCCCCEEEEEcC
Confidence 489999976543 355667788899999887764
No 241
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=58.95 E-value=22 Score=30.70 Aligned_cols=102 Identities=14% Similarity=-0.016 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch----hhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHH
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY----RRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKH 81 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~----~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
+.+|++.+.++-.|-....-++..|..+|++|+++....-. +.+.. .+..++-++-.+..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----~~~d~v~lS~~~~~----------- 145 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----HKPDILGLSALMTT----------- 145 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEeccccc-----------
Confidence 56899999999999999999999999999999988754332 33333 34444444322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC--CeeEEEeCCCchhHHHHHHHcCCCcEE
Q 036740 82 YMSEFKRRSSEALAELITASQNEGGQ--PFTCLVYPQLLPWAAEVARAYHLPSAL 134 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~--~~D~vv~D~~~~~~~~~A~~lgiP~v~ 134 (424)
....+.++++.+++. +. ++.++|..... ....++.+|.-.+.
T Consensus 146 --------~~~~~~~~i~~lr~~-~~~~~~~i~vGG~~~--~~~~~~~~GaD~~~ 189 (201)
T cd02070 146 --------TMGGMKEVIEALKEA-GLRDKVKVMVGGAPV--NQEFADEIGADGYA 189 (201)
T ss_pred --------cHHHHHHHHHHHHHC-CCCcCCeEEEECCcC--CHHHHHHcCCcEEE
Confidence 112234444555443 22 44556666433 34688888866554
No 242
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=58.33 E-value=21 Score=29.43 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=24.8
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhcCC
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLDSGH 305 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~~~~ 305 (424)
.+|+|+||........++..+.+|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999998877888999999988654
No 243
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=57.82 E-value=24 Score=31.43 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
+|+|+++.. + .=...|++.|...++.+++.+...+-.
T Consensus 2 ~~~ilvlGG--T---~Dar~la~~L~~~~~~~~~ss~t~~g~ 38 (257)
T COG2099 2 MMRILLLGG--T---SDARALAKKLAAAPVDIILSSLTGYGA 38 (257)
T ss_pred CceEEEEec--c---HHHHHHHHHhhccCccEEEEEcccccc
Confidence 456666543 2 234789999999998887777554443
No 244
>PLN02939 transferase, transferring glycosyl groups
Probab=57.35 E-value=20 Score=38.61 Aligned_cols=46 Identities=7% Similarity=0.090 Sum_probs=34.9
Q ss_pred CCeEEecccchh---hhhccccceeeecc---cCh-hHHHHHHhcCCcEeecccc
Q 036740 338 EKGMIVPWCSQV---EVLSHEAVGCFVTH---CGW-SSSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 338 ~n~~v~~~~pq~---~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~ 385 (424)
+++.+..+.+.. .+++.+++ ||.- =|. .+.+||+++|+|.|+....
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vG 889 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTG 889 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCC
Confidence 578888888764 47888888 8853 233 4789999999999987543
No 245
>PRK08506 replicative DNA helicase; Provisional
Probab=57.33 E-value=72 Score=31.77 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=33.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
+++-..|+.|-..-.+.+|...++.|+.|.|++.+-...
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ 233 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAE 233 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHH
Confidence 556666899999999999999988999999999875543
No 246
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=57.14 E-value=13 Score=35.71 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=34.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
-+++..-|+.|-..=++.+|..++++|.+|.|++.+...+.+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 356666689999999999999999999999999987655443
No 247
>PRK07206 hypothetical protein; Provisional
Probab=57.08 E-value=36 Score=33.15 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=23.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.+|+++-.... -..+++++.++|+++.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 35666665333 3468999999999998888653
No 248
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=56.97 E-value=74 Score=32.16 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEechh
Q 036740 91 SEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQP 139 (424)
Q Consensus 91 ~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 139 (424)
.+.....++++++. ++++||+|. .+..+|+++|++.|.+.+.-
T Consensus 131 ~~e~~~~~~~l~~~---G~~~viG~~---~~~~~A~~~gl~~ili~s~e 173 (526)
T TIGR02329 131 EEDARSCVNDLRAR---GIGAVVGAG---LITDLAEQAGLHGVFLYSAD 173 (526)
T ss_pred HHHHHHHHHHHHHC---CCCEEECCh---HHHHHHHHcCCceEEEecHH
Confidence 45667777888776 999999995 36789999999999987753
No 249
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=56.96 E-value=17 Score=32.28 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=34.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcC
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~ 51 (424)
||++.-+|+.+=+.-.+.|++.|.++ ||+|.++.++.....+..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 35555454444447899999999999 999999999888877776
No 250
>PRK11519 tyrosine kinase; Provisional
Probab=56.89 E-value=1.3e+02 Score=31.94 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=30.6
Q ss_pred CCeEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTF--PIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+.++++++. |+-|-..-...||..|+..|++|.++-.+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 345555444 78899999999999999999999999654
No 251
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=56.87 E-value=51 Score=32.92 Aligned_cols=45 Identities=9% Similarity=-0.043 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMA 50 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 50 (424)
..-+++...|+.|-..=.+.++.+.+++|..|.|++.++..+.+.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLL 307 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHH
Confidence 345677778899999999999999999999999999887665443
No 252
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=56.83 E-value=34 Score=32.56 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=31.7
Q ss_pred eEEecccch---hhhhccccceeeecccChhHHHHHHhcCCcEeec
Q 036740 340 GMIVPWCSQ---VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAF 382 (424)
Q Consensus 340 ~~v~~~~pq---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 382 (424)
+.+.+|+|| +.+|-.|++ -+-. |=-|..-|..+|+|+|=-
T Consensus 246 l~~lPF~~Q~~yD~LLw~cD~--NfVR-GEDSfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 246 LHVLPFVPQDDYDRLLWACDF--NFVR-GEDSFVRAQWAGKPFVWH 288 (374)
T ss_pred EEECCCCCHHHHHHHHHhCcc--ceEe-cchHHHHHHHhCCCceEe
Confidence 344499998 669998988 5555 678999999999999843
No 253
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=56.82 E-value=1.1e+02 Score=28.74 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
+-.|+++..++-|-..-+..||..|+.+|++|.++..+.++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 44677888789999999999999999999999999977653
No 254
>PRK08760 replicative DNA helicase; Provisional
Probab=56.64 E-value=63 Score=32.21 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=31.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEECccchh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTR-IGTRVTFAIAISAYR 47 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~ 47 (424)
+++..-|+.|-..-.+.+|...+. .|+.|.|++.+....
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ 271 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSAS 271 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHH
Confidence 566667899999999999998875 599999999775443
No 255
>PLN02939 transferase, transferring glycosyl groups
Probab=56.44 E-value=75 Score=34.45 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCC------ccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 4 QQQPHFLLLTFPI------QGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 4 ~~~~~il~~~~~~------~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.++|||+|++.-. .|=..-.-.|.++|+++||+|.+++|..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3679999998632 2333335588999999999999999854
No 256
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=56.26 E-value=28 Score=30.71 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=34.2
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 8 HFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
-|.|++. |+-|-..-++.||.+|+++|-.|+++=.+.+++
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 3566666 789999999999999999999999998776654
No 257
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=56.18 E-value=24 Score=32.97 Aligned_cols=33 Identities=15% Similarity=-0.041 Sum_probs=24.9
Q ss_pred CCeeEEE-eCCCc-hhHHHHHHHcCCCcEEEechh
Q 036740 107 QPFTCLV-YPQLL-PWAAEVARAYHLPSALLWLQP 139 (424)
Q Consensus 107 ~~~D~vv-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 139 (424)
..||+|| .|... ..+..=|.++|||+|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 3688876 66655 567778889999999986654
No 258
>PRK12342 hypothetical protein; Provisional
Probab=56.10 E-value=26 Score=31.57 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=24.0
Q ss_pred CeeEEEeCCCc-h-----hHHHHHHHcCCCcEEEec
Q 036740 108 PFTCLVYPQLL-P-----WAAEVARAYHLPSALLWL 137 (424)
Q Consensus 108 ~~D~vv~D~~~-~-----~~~~~A~~lgiP~v~~~~ 137 (424)
+||+|++...+ . -+..+|+.+|+|++.+..
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 69999976544 2 389999999999998644
No 259
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=55.65 E-value=58 Score=26.88 Aligned_cols=103 Identities=25% Similarity=0.267 Sum_probs=54.4
Q ss_pred EEEEcCCCccChHH----HHHHHHHHHhC-CCEEEEEECcc---chhh----hcCCCCCCCCce-EEEcCCCCCCCCCCC
Q 036740 9 FLLLTFPIQGHINP----SLQFARRLTRI-GTRVTFAIAIS---AYRR----MANNPTPEDGLS-FASFSDGYDDGFNSK 75 (424)
Q Consensus 9 il~~~~~~~GH~~p----~l~La~~L~~r-Gh~Vt~~~~~~---~~~~----i~~~~~~~~gi~-~~~~~~~~~~~~~~~ 75 (424)
|+++.--..|.+++ .+..|++|++. |.+|+.++... ..+. +.. .|+. .+.+.+..-
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~~~------ 70 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDPAL------ 70 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-GGG------
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCccc------
Confidence 34444433555555 67889999974 78887776442 2233 343 4543 223221100
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc---hhHHHHHHHcCCCcEEE
Q 036740 76 QNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLL---PWAAEVARAYHLPSALL 135 (424)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~---~~~~~~A~~lgiP~v~~ 135 (424)
..+ .-......+.+++++. +||+|+..... ..+..+|.++|.|++.-
T Consensus 71 ----~~~---~~~~~a~~l~~~~~~~------~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 71 ----AEY---DPEAYADALAELIKEE------GPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp ----TTC----HHHHHHHHHHHHHHH------T-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred ----ccc---CHHHHHHHHHHHHHhc------CCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 000 1111223334444442 89999977555 34688999999999973
No 260
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=55.41 E-value=35 Score=28.99 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcC
Q 036740 21 NPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFS 65 (424)
Q Consensus 21 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~ 65 (424)
.-++.+|+.|.+.|+++. ++....+.+.. .|+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e-----~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKE-----AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHH-----cCCeEEEhh
Confidence 447899999999999983 55667778888 899888775
No 261
>PRK06321 replicative DNA helicase; Provisional
Probab=55.15 E-value=1.1e+02 Score=30.51 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=31.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEECccchh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLT-RIGTRVTFAIAISAYR 47 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~ 47 (424)
+++-.-|+.|-..-.+.+|...+ +.|..|.|++-+-...
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD 268 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 45666789999999999999987 4699999999775443
No 262
>PRK06904 replicative DNA helicase; Validated
Probab=54.88 E-value=34 Score=34.01 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=31.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEECccchh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTR-IGTRVTFAIAISAYR 47 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~ 47 (424)
|++-.-|+.|-..-.+.+|...+. .|+.|.|++.+-...
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ 263 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAE 263 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 455666999999999999998875 599999999875553
No 263
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=54.77 E-value=17 Score=30.66 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=33.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
||++.-+|+. ...-...+.+.|.++|++|.++.++...+++..
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 5666666654 455667999999999999999998887776654
No 264
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=54.75 E-value=21 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 20 INPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 20 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+.-.+-++..|.++||+|++++++.....++.
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 34467889999999999999999998888776
No 265
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=54.62 E-value=86 Score=30.79 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHH
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSE 85 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
..|+++...+ ...+.+++.|.+-|-+|..+......+..... + .......+.
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~------------~----~~~~~~~D~------- 362 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL------------P----VETVVIGDL------- 362 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC------------C----cCcEEeCCH-------
Confidence 4567666533 46788999999999999887765543322210 0 000000111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEE
Q 036740 86 FKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALL 135 (424)
Q Consensus 86 ~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 135 (424)
..+.+++++ .++|++|... ....+|+++|||++.+
T Consensus 363 ------~~l~~~i~~------~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ------EDLEDLACA------AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred ------HHHHHHHhh------cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 112333333 3899999885 3578999999999985
No 266
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=54.53 E-value=20 Score=35.50 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=35.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
-+++..-|+.|-..-++.++..++++|++|.|++.++..+.+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 356666789999999999999999999999999987665544
No 267
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.47 E-value=27 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=33.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
||++.+.++-.|-.-..-++.-|...|++|++.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 6889999999999999999999999999999998653
No 268
>PRK10037 cell division protein; Provisional
Probab=54.24 E-value=22 Score=31.83 Aligned_cols=37 Identities=19% Similarity=0.065 Sum_probs=31.0
Q ss_pred CeEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+.|+|... |+-|-..-...||..|+++|++|.++=.+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 35666666 78899999999999999999999998433
No 269
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=54.05 E-value=20 Score=30.19 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=32.0
Q ss_pred eEEEEcCCCccChHH-HHHHHHHHHh-CCCEEEEEECccchhhhcC
Q 036740 8 HFLLLTFPIQGHINP-SLQFARRLTR-IGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 8 ~il~~~~~~~GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~~~~i~~ 51 (424)
||+..-+++ ||... .+.+.++|.+ +||+|.++.++...+.+..
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 355555554 77766 8899999984 6999999999877755543
No 270
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.89 E-value=8.9 Score=36.71 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=36.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhc
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMA 50 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 50 (424)
=|++-.-|+-|.-.=++.++..|+++| .|.|++.++....+.
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 356666689999999999999999999 999999998777654
No 271
>PRK11823 DNA repair protein RadA; Provisional
Probab=53.47 E-value=16 Score=36.02 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=35.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
-+++..-|+.|-..=++.++..++++|.+|.|++.++..+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 456677789999999999999999999999999988766544
No 272
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.92 E-value=2.1e+02 Score=27.14 Aligned_cols=124 Identities=9% Similarity=-0.041 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc---chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHH
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS---AYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKH 81 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~---~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
++.|++++-.|.-||--.+--=|..|++.|.+|.+++--. ..+.+.. ++++++.++.-- ... ........
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h-----prI~ih~m~~l~-~~~-~~p~~~~l 83 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH-----PRIRIHGMPNLP-FLQ-GGPRVLFL 83 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC-----CceEEEeCCCCc-ccC-CCchhhhh
Confidence 6789999999999999999999999999999999998433 3344454 789999887431 110 11111011
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeC-CCchhHHHHH----HHcCCCcEEEechhhHH
Q 036740 82 YMSEFKRRSSEALAELITASQNEGGQPFTCLVYP-QLLPWAAEVA----RAYHLPSALLWLQPALV 142 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D-~~~~~~~~~A----~~lgiP~v~~~~~~~~~ 142 (424)
.++.+... ...+..++. + .++|.++.- +-+.....++ .-.|-..++=|....++
T Consensus 84 ~lKvf~Qf-l~Ll~aL~~-~-----~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 84 PLKVFWQF-LSLLWALFV-L-----RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred HHHHHHHH-HHHHHHHHh-c-----cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 12222222 222223332 1 377877643 3333333333 33467777767665544
No 273
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=52.68 E-value=1.4e+02 Score=31.49 Aligned_cols=103 Identities=20% Similarity=0.183 Sum_probs=59.5
Q ss_pred eEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHH
Q 036740 8 HFLLLTFP-IQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEF 86 (424)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
.|.+.++. .-|-..-++.|++.|.++|.+|.++=|-... ++. . ......+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~-----------p~~-----------------~-~~~~~~~ 54 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP-----------PLT-----------------M-SEVEALL 54 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC-----------CCC-----------------H-HHHHHHH
Confidence 45555554 5789999999999999999999998642211 000 0 0000000
Q ss_pred HH-HHHHHHHHHHHHHhhcCCCCeeEEEeCCCch---------hHHHHHHHcCCCcEEEechhh
Q 036740 87 KR-RSSEALAELITASQNEGGQPFTCLVYPQLLP---------WAAEVARAYHLPSALLWLQPA 140 (424)
Q Consensus 87 ~~-~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~---------~~~~~A~~lgiP~v~~~~~~~ 140 (424)
.. .....++.+++.+..- ..+.|+||+|.... ....+|+.++.|++.+.....
T Consensus 55 ~~~~~~~~~~~I~~~~~~l-~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~ 117 (684)
T PRK05632 55 ASGQLDELLEEIVARYHAL-AKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGN 117 (684)
T ss_pred hccCChHHHHHHHHHHHHh-ccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCC
Confidence 00 0011222222222211 23789999776542 247789999999999876653
No 274
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=52.64 E-value=60 Score=29.78 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCEEEEEECccch
Q 036740 24 LQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 24 l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
..+|..|+++|++|.++..+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999987544
No 275
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=52.16 E-value=1.8e+02 Score=26.20 Aligned_cols=59 Identities=27% Similarity=0.465 Sum_probs=38.1
Q ss_pred CCeEEecccch---hhhhccccceeeecc---cChh-HHHHHHhcCCcEeecccccchhHHHHHHHhhhccee
Q 036740 338 EKGMIVPWCSQ---VEVLSHEAVGCFVTH---CGWS-SSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGV 403 (424)
Q Consensus 338 ~n~~v~~~~pq---~~lL~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 403 (424)
+++...+++++ ..+++.+++ ++.- .|.| ++.||+++|+|.|... .......+.+ .+.|.
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~-~~~g~ 322 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVED-GETGL 322 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcC-CCceE
Confidence 57777899982 446776777 6665 3554 4599999999996554 3334444443 33465
No 276
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=52.08 E-value=39 Score=29.55 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=35.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMA 50 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 50 (424)
.-+++...|+.|-..-++.++..-+++|+.|.|++.+...+.+.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL 60 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 34566666899999999999988888899999999877665443
No 277
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=52.00 E-value=1.1e+02 Score=26.87 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHH
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMS 84 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
.++=|+++..|++|-..-.-.|++-|.-.|++..++.-.+++..... ... +..+.. .+. .+...
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~-----~~~---------~~~ff~-p~n-~~~~~ 74 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSG-----APQ---------DAEFFD-PDN-EEAKK 74 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHS-----S-S----------GGGGS-TT--HHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccc-----ccc---------ccccCC-CCC-hHHHH
Confidence 45678889999999999999999999999999999998888887776 200 111111 111 12122
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchh------HHHHHHHcCCCcEEE
Q 036740 85 EFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPW------AAEVARAYHLPSALL 135 (424)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~------~~~~A~~lgiP~v~~ 135 (424)
.-.......++++++.+.++ .=++.|.|+.-.. ........++.++.+
T Consensus 75 ~R~~~a~~~l~dl~~~l~~~---~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFI 128 (222)
T PF01591_consen 75 LREQIAKEALEDLIEWLQEE---GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFI 128 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-----SEEEEES---SHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 22222345667777777644 5689999976632 345556677665554
No 278
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=51.53 E-value=1.2e+02 Score=25.07 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=53.7
Q ss_pred hHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEE
Q 036740 263 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMI 342 (424)
Q Consensus 263 ~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v 342 (424)
.++-+|+.+.+ ...++ |. ..-......++..+.+-+++-++... ... .-+ + .+...+
T Consensus 21 ~~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~viGVlp~~-l~~----~~~------~----~~~~i~ 77 (159)
T TIGR00725 21 YRLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVVGILPDE-DFA----GNP------Y----LTIKVK 77 (159)
T ss_pred HHHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEEEECChh-hcc----CCC------C----ceEEEE
Confidence 56667776653 45555 43 12234456666666676666655433 100 000 0 011222
Q ss_pred ecc-cchhhhh-ccccceeeecccChhHHH---HHHhcCCcEeecccc
Q 036740 343 VPW-CSQVEVL-SHEAVGCFVTHCGWSSSL---ESLVYGVPVVAFPQW 385 (424)
Q Consensus 343 ~~~-~pq~~lL-~~~~~~~~I~HgG~gs~~---eal~~GvP~v~~P~~ 385 (424)
.++ .+-..++ ..++ .+++--||.||+. |++.+++|+++++..
T Consensus 78 ~~~~~~Rk~~m~~~sd-a~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 78 TGMNFARNFILVRSAD-VVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred CCCcchHHHHHHHHCC-EEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 243 3334444 3444 4466678999876 568899999998854
No 279
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=51.50 E-value=60 Score=27.29 Aligned_cols=107 Identities=24% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhc
Q 036740 274 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLS 353 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~ 353 (424)
++.+-.+++|.+. +++.+.++..|.+++..-... ... ..+. ... ..+.+-+++|+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~-~~~-----------~~~~----~~~--~~~~~l~ell~ 90 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP-KPE-----------EGAD----EFG--VEYVSLDELLA 90 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC-HHH-----------HHHH----HTT--EEESSHHHHHH
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC-Chh-----------hhcc----ccc--ceeeehhhhcc
Confidence 4457788888877 456667777888877654332 100 1011 111 26668889999
Q ss_pred cccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcce-eEeeecCCCccchHHHHHhhhC
Q 036740 354 HEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTG-VRVKANEEGIVESDEINRCLEL 424 (424)
Q Consensus 354 ~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G-~~l~~~~~~~~~~~~l~~ai~~ 424 (424)
.+++ ++.|.-.+. ......|+..+.+ ++=| +.++....+-++++.|.+++++
T Consensus 91 ~aDi--v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 91 QADI--VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp H-SE--EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhh--hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHhh
Confidence 9999 887743221 1256778888887 7766 3445543456777777777653
No 280
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=50.94 E-value=34 Score=29.44 Aligned_cols=103 Identities=9% Similarity=-0.122 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc----hhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchH
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA----YRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRK 80 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~----~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 80 (424)
++-+|++.+.++-.|-....-++..|..+|++|+++....- .+.+.. .+.+++-++-.+...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-----~~pd~v~lS~~~~~~--------- 148 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-----EKPLMLTGSALMTTT--------- 148 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----cCCCEEEEccccccC---------
Confidence 34689999999999999999999999999999999986543 344444 455555444222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-CCCeeEEEeCCCchhHHHHHHHcCCCcE
Q 036740 81 HYMSEFKRRSSEALAELITASQNEG-GQPFTCLVYPQLLPWAAEVARAYHLPSA 133 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~D~vv~D~~~~~~~~~A~~lgiP~v 133 (424)
...+.++++.+++.. ..++-++|..... ...+++++|.-.+
T Consensus 149 ----------~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~~ 190 (197)
T TIGR02370 149 ----------MYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADVY 190 (197)
T ss_pred ----------HHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcEE
Confidence 112234444444330 1245667766443 3467777776543
No 281
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=50.77 E-value=34 Score=32.11 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=21.5
Q ss_pred CeeEEEeCCCchh----------HHHHHHHcCCCcEEE
Q 036740 108 PFTCLVYPQLLPW----------AAEVARAYHLPSALL 135 (424)
Q Consensus 108 ~~D~vv~D~~~~~----------~~~~A~~lgiP~v~~ 135 (424)
+||++|+.+.+.+ +..+.++++||.+.-
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999887743 234566899999973
No 282
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=50.23 E-value=46 Score=31.64 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.6
Q ss_pred cccceeeecccChhH---HHHHHhcCCcEeec
Q 036740 354 HEAVGCFVTHCGWSS---SLESLVYGVPVVAF 382 (424)
Q Consensus 354 ~~~~~~~I~HgG~gs---~~eal~~GvP~v~~ 382 (424)
+|++ +|++||+-| +..|...|+|.++.
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 4777 999999997 89999999999874
No 283
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=50.04 E-value=26 Score=29.55 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.4
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+...++++..++.|-..=..++++++.++|+.|.|+...+....+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 34578899999999999999999999999999999998888877766
No 284
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=49.97 E-value=29 Score=30.08 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
||++.++..+-.| -.||+.|++.||+|++.+...
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCC
Confidence 4566665554433 467888999999999997543
No 285
>PRK00784 cobyric acid synthase; Provisional
Probab=49.84 E-value=1.2e+02 Score=30.36 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=28.2
Q ss_pred eEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 8 HFLLLTFP-IQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
+|.+..+. .-|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 35555453 579999999999999999999987755
No 286
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.52 E-value=1.4e+02 Score=26.15 Aligned_cols=34 Identities=24% Similarity=0.093 Sum_probs=27.9
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 11 LLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 11 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
+-.--+.|--.=+..++--+...||.|++++++.
T Consensus 33 IEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~ 66 (235)
T COG2874 33 IEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL 66 (235)
T ss_pred EECCCCccHHHHHHHHHHHHHhCCceEEEEEech
Confidence 3333467888888899999999999999999874
No 287
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=49.41 E-value=25 Score=34.02 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+.+||++.-+|+. ...-...+.+.|.++|++|.++.++....++..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 4578888888766 455789999999999999999999887776654
No 288
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.15 E-value=17 Score=30.76 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=24.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
|||+++. +.|++-. .|+++...|||+||.++-..
T Consensus 1 mKIaiIg--AsG~~Gs--~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIG--ASGKAGS--RILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEe--cCchhHH--HHHHHHHhCCCeeEEEEeCh
Confidence 5676654 4455443 57899999999999998543
No 289
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=49.06 E-value=45 Score=27.79 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcC
Q 036740 14 FPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFS 65 (424)
Q Consensus 14 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~ 65 (424)
.|+.|++-- .++++|.++||+|+.++-......- . .+++.+...
T Consensus 4 ~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~~~~-~-----~~~~~~~~d 47 (183)
T PF13460_consen 4 FGATGFVGR--ALAKQLLRRGHEVTALVRSPSKAED-S-----PGVEIIQGD 47 (183)
T ss_dssp ETTTSHHHH--HHHHHHHHTTSEEEEEESSGGGHHH-C-----TTEEEEESC
T ss_pred ECCCChHHH--HHHHHHHHCCCEEEEEecCchhccc-c-----cccccceee
Confidence 356666654 4889999999999999965443222 3 678776543
No 290
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=48.92 E-value=36 Score=29.23 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=29.0
Q ss_pred CeEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTF--PIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+|++.++. ++-|-..-...||..|+++|++|.++=.+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 55544443 57788889999999999999999888544
No 291
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=48.72 E-value=34 Score=31.56 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
++.+|.|..=|+-|-..-..+||..|+++|++|.++=
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4445667655888999999999999999999999994
No 292
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=48.35 E-value=28 Score=29.58 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=36.5
Q ss_pred CeEEEEcC---CC-ccChHHHH-HHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcC
Q 036740 7 PHFLLLTF---PI-QGHINPSL-QFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFS 65 (424)
Q Consensus 7 ~~il~~~~---~~-~GH~~p~l-~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~ 65 (424)
.||+++.+ |+ +|=+--++ .|+..|+++||+|++.|.....+.-... -.|++.+.+|
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~---y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE---YNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc---cCCeEEEEeC
Confidence 46777665 32 45555544 6888999999999999976554321111 1578887776
No 293
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=47.88 E-value=42 Score=30.25 Aligned_cols=31 Identities=10% Similarity=-0.005 Sum_probs=24.4
Q ss_pred CeeEEEeCCCc------hhHHHHHHHcCCCcEEEech
Q 036740 108 PFTCLVYPQLL------PWAAEVARAYHLPSALLWLQ 138 (424)
Q Consensus 108 ~~D~vv~D~~~------~~~~~~A~~lgiP~v~~~~~ 138 (424)
+||+|++...+ .-+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 69999976444 25799999999999986543
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.40 E-value=1.9e+02 Score=25.52 Aligned_cols=43 Identities=19% Similarity=0.036 Sum_probs=34.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhh
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRR 48 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (424)
..-+++...|+.|...-.+.++.+-+++|..+.|++.+...+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~ 63 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQ 63 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHH
Confidence 3456777788999999999988776789999999998765543
No 295
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=47.19 E-value=25 Score=33.96 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
.+||++.-+|+.|= .-.+.+.+.|.+.|++|.++.++...+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 46788877765554 5689999999999999999999887776654
No 296
>PRK09165 replicative DNA helicase; Provisional
Probab=47.02 E-value=1.1e+02 Score=30.85 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=31.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC---------------CCEEEEEECccchhh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRI---------------GTRVTFAIAISAYRR 48 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~ 48 (424)
+++..-|+.|-..-.+.+|...+.+ |..|.|++.+-....
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~q 274 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQ 274 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHH
Confidence 5666678999999999999888753 789999998765543
No 297
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=46.60 E-value=1.9e+02 Score=24.79 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=57.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE---Cc-cc-hh-hhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHH
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI---AI-SA-YR-RMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHY 82 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~---~~-~~-~~-~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
|.+++..+.|-....+.+|-+-.-+|.+|.++- +. .+ .. .+... ..++.|+.+++++..... +. ..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~---~~~v~~~~~~~g~tw~~~---~~-~~- 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF---GLGVEFHGMGEGFTWETQ---DR-EA- 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh---ccceeEEecCCceeCCCc---Cc-HH-
Confidence 677888899999998888866666777776664 22 11 11 11110 156788777765543321 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCch
Q 036740 83 MSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLP 119 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~ 119 (424)
.. ..+...++...+.+.+. +.|+||.|-+.+
T Consensus 103 --d~-~aa~~~w~~a~~~l~~~---~ydlviLDEl~~ 133 (198)
T COG2109 103 --DI-AAAKAGWEHAKEALADG---KYDLVILDELNY 133 (198)
T ss_pred --HH-HHHHHHHHHHHHHHhCC---CCCEEEEehhhH
Confidence 11 33444555555555544 899999997663
No 298
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=46.36 E-value=1.2e+02 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=22.6
Q ss_pred CeeEEEeCCCc---hhHHHHHHHcCCCcEE
Q 036740 108 PFTCLVYPQLL---PWAAEVARAYHLPSAL 134 (424)
Q Consensus 108 ~~D~vv~D~~~---~~~~~~A~~lgiP~v~ 134 (424)
+||+|++-... ..+..+|.++|.|++.
T Consensus 91 ~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 91 KPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred CCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 79999976555 4579999999999997
No 299
>PRK13768 GTPase; Provisional
Probab=45.76 E-value=96 Score=27.88 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=31.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA 45 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (424)
-+++...++.|-..-+..++..|..+|++|.++..+..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 45566667889999999999999999999999976543
No 300
>PRK07773 replicative DNA helicase; Validated
Probab=45.68 E-value=1.2e+02 Score=33.00 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=32.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEECccchhh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRI-GTRVTFAIAISAYRR 48 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~ 48 (424)
+++..-|+.|-..-.+.+|...+.+ |..|.|++-+.....
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 5666778999999999999998754 889999997755543
No 301
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=45.66 E-value=60 Score=23.54 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEEcCCCcc----ChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 1 MEQQQQPHFLLLTFPIQG----HINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~G----H~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
|.+.+-.+|-+-|+-+.| +.+.+-.|=..|++.||+|.+.-++.+-
T Consensus 1 Mp~~a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d~n 50 (88)
T PF15092_consen 1 MPKNAYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIEDWN 50 (88)
T ss_pred CCCccEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEecccc
Confidence 443344455555555554 5677889999999999999999877654
No 302
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=45.55 E-value=73 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
.+|||.|+..|--|- .|++.|.++||+|+-+...
T Consensus 9 ~~l~I~iIGaGrVG~-----~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGT-----ALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ---EEEEECTSCCCC-----HHHHHHHHTTSEEEEESSC
T ss_pred CccEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeC
Confidence 689999998876553 6888899999999877654
No 303
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=45.48 E-value=25 Score=31.78 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=23.1
Q ss_pred ceEEEEecccccCCHH-HHHHHHHHHHh--cCCCEEEEEec
Q 036740 276 SVIYVAFGTICVLEKR-QVEEIARGLLD--SGHPFLWVSRE 313 (424)
Q Consensus 276 ~vvyvs~GS~~~~~~~-~~~~~~~~l~~--~~~~~i~~~~~ 313 (424)
.++.+||||......+ .+..+.+.++. .+.++.|+..+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 4788888887755444 67777777766 57788887754
No 304
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=44.69 E-value=54 Score=25.41 Aligned_cols=37 Identities=19% Similarity=0.029 Sum_probs=33.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888665
No 305
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=44.35 E-value=1.2e+02 Score=29.81 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.0
Q ss_pred CeeEEEeCCCchhHHHHHHHcCCCcEEE
Q 036740 108 PFTCLVYPQLLPWAAEVARAYHLPSALL 135 (424)
Q Consensus 108 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 135 (424)
+||++|.+.. ...+|+++|+|++.+
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 8999999964 578999999999975
No 306
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=44.03 E-value=23 Score=31.69 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEECcc
Q 036740 21 NPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 21 ~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.-+-.|+++|+++||+|++++|..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 345688999999999999999754
No 307
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=43.78 E-value=1.4e+02 Score=27.54 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHh--CCCEEEEEECc--cchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchH
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTR--IGTRVTFAIAI--SAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRK 80 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~--rGh~Vt~~~~~--~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 80 (424)
++|||+++..+..+.+.- |.++... .+++|.++.+. .......+ .|+.+..++... . +. .
T Consensus 88 ~~~ri~vl~Sg~g~nl~a---l~~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~~-~------~~-~ 151 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLND---LLYRWRIGELPMDIVGVVSNHPDLEPLAAW-----HGIPFHHFPITP-D------TK-P 151 (286)
T ss_pred cCceEEEEEcCCcccHHH---HHHHHHcCCCCcEEEEEEECCccHHHHHHH-----hCCCEEEeCCCc-C------ch-h
Confidence 789999999986444443 3333333 36888887543 34444555 789888775321 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc-hhHHHHHHHcCCCcEEE
Q 036740 81 HYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLL-PWAAEVARAYHLPSALL 135 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~-~~~~~~A~~lgiP~v~~ 135 (424)
.....+.+.+++. ++|++|.-.|. .-...+-+.+.-.++-+
T Consensus 152 --------~~~~~~~~~l~~~------~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK13011 152 --------QQEAQVLDVVEES------GAELVVLARYMQVLSPELCRKLAGRAINI 193 (286)
T ss_pred --------hhHHHHHHHHHHh------CcCEEEEeChhhhCCHHHHhhccCCeEEe
Confidence 0011122333333 89999876555 43445555554444544
No 308
>PRK05636 replicative DNA helicase; Provisional
Probab=43.71 E-value=1.4e+02 Score=30.12 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=31.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEECccchh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLT-RIGTRVTFAIAISAYR 47 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~ 47 (424)
|++...|+.|-..-.+.+|...+ +.|..|.|++.+-...
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ 307 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKS 307 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHH
Confidence 46667789999999999998876 4689999998775543
No 309
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=43.50 E-value=34 Score=31.96 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc-chhhhcC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS-AYRRMAN 51 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~i~~ 51 (424)
+|+|.++..|++|- +||+.|++.||+|++-..+. ....+..
T Consensus 1 ~~kI~ViGaGswGT-----ALA~~la~ng~~V~lw~r~~~~~~~i~~ 42 (329)
T COG0240 1 MMKIAVIGAGSWGT-----ALAKVLARNGHEVRLWGRDEEIVAEINE 42 (329)
T ss_pred CceEEEEcCChHHH-----HHHHHHHhcCCeeEEEecCHHHHHHHHh
Confidence 47899999999984 78999999999999998643 3344444
No 310
>PRK13236 nitrogenase reductase; Reviewed
Probab=43.45 E-value=48 Score=30.63 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=29.2
Q ss_pred CeE-EEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 7 PHF-LLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 7 ~~i-l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
||+ .|..=|+-|-..-.++||..|+++|++|.++=
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 354 45444788999999999999999999999984
No 311
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.22 E-value=2.5e+02 Score=29.80 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=30.0
Q ss_pred CCeEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTF--PIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+.+++.++. |+-|-..-...||..|+..|++|.++=.+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 344544444 57888999999999999999999998654
No 312
>PRK04148 hypothetical protein; Provisional
Probab=43.03 E-value=52 Score=26.33 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+.++|+.+..| +| ..+|..|++.||+|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 45789999887 44 34688899999999988543
No 313
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=43.02 E-value=27 Score=28.90 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
|++|.|+..+..| .++|+.|.++||+|++.-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 5788888887666 478999999999998875
No 314
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=42.83 E-value=44 Score=30.11 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=30.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
+|+|+.=|+-|-..-+..||..|+++|++|.++=.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~ 37 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGC 37 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 57777668899999999999999999999998843
No 315
>PLN02470 acetolactate synthase
Probab=42.81 E-value=44 Score=34.28 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.0
Q ss_pred cceeeecccChh------HHHHHHhcCCcEeecc
Q 036740 356 AVGCFVTHCGWS------SSLESLVYGVPVVAFP 383 (424)
Q Consensus 356 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 383 (424)
..+++++|.|-| .+.+|.+.++|||++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 455588998876 6679999999999985
No 316
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.79 E-value=34 Score=33.86 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
..||++.-+++-+ ..-...|++.|.++|++|.++.++...+++..
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 4678777776544 34788999999999999999999988777765
No 317
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=42.61 E-value=84 Score=26.08 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHh-CCCEEEEEE
Q 036740 19 HINPSLQFARRLTR-IGTRVTFAI 41 (424)
Q Consensus 19 H~~p~l~La~~L~~-rGh~Vt~~~ 41 (424)
|....-+|+++|.+ +|.++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 77888899999988 565444443
No 318
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=42.56 E-value=58 Score=29.82 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
..++|+++..|..|. .+|+.|+++||.|.++.-+...+....
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 357889988887775 478999999999999988777765544
No 319
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=42.52 E-value=43 Score=32.30 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCCeEEEEc-C-CCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 5 QQPHFLLLT-F-PIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 5 ~~~~il~~~-~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
++++|+.+. . |+-|-..-.+.||..|+.+|++|.++=.+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 345554443 3 78899999999999999999999988544
No 320
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=41.81 E-value=26 Score=32.01 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEE
Q 036740 25 QFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFAS 63 (424)
Q Consensus 25 ~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~ 63 (424)
-+|..|.+.||+|++++.....+.+.+ .|+.+..
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~-----~Gl~i~~ 38 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQ-----EGLRIVS 38 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHH-----CCcEEEe
Confidence 468889999999999997655556666 6665543
No 321
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=41.31 E-value=2.1e+02 Score=23.75 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=25.7
Q ss_pred EEEcCCCccChHHHH-HHHHHHHhCCCEEEEEECcc
Q 036740 10 LLLTFPIQGHINPSL-QFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 10 l~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~~~~ 44 (424)
+.+.+...+.+..++ .+|++|+++|++|.=++...
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~ 37 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRN 37 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 344555667777765 78999999999997776543
No 322
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=41.18 E-value=76 Score=25.64 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.9
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEec
Q 036740 274 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRE 313 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 313 (424)
...+|++++||......+.++++++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3348999999998877888999988885 35677776543
No 323
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=41.13 E-value=35 Score=26.45 Aligned_cols=32 Identities=3% Similarity=0.047 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 20 INPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 20 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+.|++.+.-...-|||++|++-|..+...+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 46777777778889999999999988887765
No 324
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=41.11 E-value=60 Score=28.37 Aligned_cols=40 Identities=15% Similarity=-0.054 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
++-+|++.+.++-.|-.-..-++-.|..+|++|+++....
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 3568999999999999999999999999999999998653
No 325
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.05 E-value=1.8e+02 Score=23.09 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=34.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
++.||++-..+.-+|-.----++..|...|++|......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 467899999999999999999999999999999988754
No 326
>CHL00194 ycf39 Ycf39; Provisional
Probab=40.79 E-value=67 Score=29.82 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=23.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|+|+++ |+.|.+-. .|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG~--~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLGR--QIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHHH--HHHHHHHHCCCeEEEEEcC
Confidence 456654 56665544 4778899999999999843
No 327
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=40.77 E-value=2.2e+02 Score=23.92 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=48.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc---h---hhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchH
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA---Y---RRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRK 80 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~---~---~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 80 (424)
-.|-+++..+.|-....+.+|-+-+-+|.+|.++-.-.. . ..+... .++++.....++... .+. .
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l----~~~~~~~~g~~f~~~----~~~-~ 74 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL----PNVEIERFGKGFVWR----MNE-E 74 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG----T--EEEE--TT--------GGG-H
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC----CeEEEEEcCCccccc----CCC-c
Confidence 347788889999999988888776677888888752111 1 112221 457776665532211 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCc
Q 036740 81 HYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLL 118 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~ 118 (424)
. .+ .......++...+.+.+ ..+|+||.|-..
T Consensus 75 ~-~~--~~~~~~~~~~a~~~i~~---~~~dlvILDEi~ 106 (172)
T PF02572_consen 75 E-ED--RAAAREGLEEAKEAISS---GEYDLVILDEIN 106 (172)
T ss_dssp H-HH--HHHHHHHHHHHHHHTT----TT-SEEEEETHH
T ss_pred H-HH--HHHHHHHHHHHHHHHhC---CCCCEEEEcchH
Confidence 1 11 44444555555555544 389999999654
No 328
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=40.70 E-value=95 Score=31.01 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=39.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCC--CCCCC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSD--GYDDG 71 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~--~~~~~ 71 (424)
+|+=+|++... =.-++.+|+.|.+.|+++. ++....+.+.. .|+.+..+.+ ++|+-
T Consensus 3 ~~~~aLISVsD---K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e-----~GI~v~~V~k~TgfpEi 60 (513)
T PRK00881 3 MIKRALISVSD---KTGIVEFAKALVELGVEIL--STGGTAKLLAE-----AGIPVTEVSDVTGFPEI 60 (513)
T ss_pred CcCEEEEEEeC---cccHHHHHHHHHHCCCEEE--EcchHHHHHHH-----CCCeeEEeecccCCchh
Confidence 34445555544 3447899999999999983 55677778888 8998887753 44443
No 329
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=40.57 E-value=2e+02 Score=26.57 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
+..|.+...++.|-..-+..|+..|.++|+.|.++..+...
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 44566666689999999999999999999999998866433
No 330
>PLN02285 methionyl-tRNA formyltransferase
Probab=40.42 E-value=1.7e+02 Score=27.66 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=24.9
Q ss_pred CCCCCeEEEEcCCCccChHHHHHHHHHHHh------CCCEEEEEECccc
Q 036740 3 QQQQPHFLLLTFPIQGHINPSLQFARRLTR------IGTRVTFAIAISA 45 (424)
Q Consensus 3 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~------rGh~Vt~~~~~~~ 45 (424)
.+++|||+|+.++.++. ...++|.+ .+|+|..+.+...
T Consensus 3 ~~~~~kI~f~Gt~~fa~-----~~L~~L~~~~~~~~~~~~iv~Vvt~~~ 46 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAA-----TVLDALLDASQAPDSAFEVAAVVTQPP 46 (334)
T ss_pred CCCccEEEEEECCHHHH-----HHHHHHHhhhhccCCCCeEEEEEeCCC
Confidence 45899999997765542 23344444 3789888776543
No 331
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.29 E-value=2.8e+02 Score=25.01 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=48.3
Q ss_pred EEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCC
Q 036740 37 VTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQ 116 (424)
Q Consensus 37 Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~ 116 (424)
..+.+.+.+.-+... .|++...+. ..+ ... ....+.++.+.+++. +..+|+++.
T Consensus 172 ~~v~~H~af~Y~~~~-----ygl~~~~~~---~~~--~ep-------------s~~~l~~l~~~ik~~---~v~~if~e~ 225 (266)
T cd01018 172 AFMVYHPAWGYFARD-----YGLTQIPIE---EEG--KEP-------------SPADLKRLIDLAKEK---GVRVVFVQP 225 (266)
T ss_pred eEEEECchhHHHHHH-----cCCEEEecC---CCC--CCC-------------CHHHHHHHHHHHHHc---CCCEEEEcC
Confidence 344556666666677 777766431 011 011 123445556666655 899999987
Q ss_pred Cc--hhHHHHHHHcCCCcEEEechh
Q 036740 117 LL--PWAAEVARAYHLPSALLWLQP 139 (424)
Q Consensus 117 ~~--~~~~~~A~~lgiP~v~~~~~~ 139 (424)
.. -.+-.+|+..|++.+.+.+..
T Consensus 226 ~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 226 QFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred CCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 76 345789999999988876544
No 332
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=40.22 E-value=37 Score=32.13 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=55.0
Q ss_pred eEEEEcCCCcc---C--hHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCC-CCcchHH
Q 036740 8 HFLLLTFPIQG---H--INPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNS-KQNDRKH 81 (424)
Q Consensus 8 ~il~~~~~~~G---H--~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~-~~~~~~~ 81 (424)
-|+|.|..+.| + ...+..|++.|.++|++|.+++++...+...... ... +......... .+..
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~---~~~-----~~~~~~~~~~l~g~~--- 250 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEIL---AAL-----NTEQQAWCRNLAGET--- 250 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHH---Hhc-----ccccccceeeccCCC---
Confidence 46666643222 1 2247899999988899998888765554333210 000 0000000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEec
Q 036740 82 YMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWL 137 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 137 (424)
.+.++..-+ .+.|++|+.- .....+|..+|+|.|.++.
T Consensus 251 -----------sL~el~ali-----~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 251 -----------QLEQAVILI-----AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred -----------CHHHHHHHH-----HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 112222222 1569999763 5689999999999999765
No 333
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=40.20 E-value=27 Score=28.29 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEE
Q 036740 25 QFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFAS 63 (424)
Q Consensus 25 ~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~ 63 (424)
-+|..|.++||+|++++.....+.+.+ .|+.+..
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~-----~g~~~~~ 45 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKE-----QGLTITG 45 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHH-----HCEEEEE
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhh-----eeEEEEe
Confidence 468899999999999998774455666 6666643
No 334
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=40.11 E-value=46 Score=28.03 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=28.6
Q ss_pred EEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 10 LLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 10 l~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
+|.+. |+-|-..-...||..|+++|++|.++-.+.
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~ 37 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDP 37 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEEST
T ss_pred EEEcCCCCccHHHHHHHHHhccccccccccccccCc
Confidence 34444 788999999999999999999999998654
No 335
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=40.08 E-value=62 Score=31.30 Aligned_cols=28 Identities=7% Similarity=0.016 Sum_probs=21.3
Q ss_pred CeeEEEeCCCchh----------HHHHHHHcCCCcEEE
Q 036740 108 PFTCLVYPQLLPW----------AAEVARAYHLPSALL 135 (424)
Q Consensus 108 ~~D~vv~D~~~~~----------~~~~A~~lgiP~v~~ 135 (424)
+||++|+.+-+.. +..+.++++||.+.-
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 76 EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 9999999887643 233566799999984
No 336
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.05 E-value=90 Score=25.68 Aligned_cols=35 Identities=17% Similarity=0.013 Sum_probs=26.8
Q ss_pred CCCeeEEEeCCCch----------hHHHHHHHcCCCcEEEechhh
Q 036740 106 GQPFTCLVYPQLLP----------WAAEVARAYHLPSALLWLQPA 140 (424)
Q Consensus 106 ~~~~D~vv~D~~~~----------~~~~~A~~lgiP~v~~~~~~~ 140 (424)
+..||+|++...+. -+..+|+++|+|++-.+....
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 45999999876652 267899999999998655543
No 337
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.98 E-value=36 Score=30.01 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=26.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
|+++++..+-.| ..+|+.|.++||+|+.+-.+...
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCHHH
Confidence 567777666554 67999999999999999765433
No 338
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=39.94 E-value=65 Score=28.36 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=28.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCE-EEEEE
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTR-VTFAI 41 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~-Vt~~~ 41 (424)
=|+|+..|..|.......|.++|++|||+ ++.+.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii 37 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRII 37 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEe
Confidence 47788889999999999999999999985 44444
No 339
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=39.93 E-value=62 Score=31.30 Aligned_cols=29 Identities=3% Similarity=-0.103 Sum_probs=21.6
Q ss_pred CeeEEEeCCCchh----------HHHHHHHcCCCcEEEe
Q 036740 108 PFTCLVYPQLLPW----------AAEVARAYHLPSALLW 136 (424)
Q Consensus 108 ~~D~vv~D~~~~~----------~~~~A~~lgiP~v~~~ 136 (424)
+||++|+.+-+.. +..+.++++||.+.-.
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 76 NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 9999999887643 2335567999999843
No 340
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=39.90 E-value=2.6e+02 Score=26.10 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=55.0
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeE-Eecccchhhhh
Q 036740 274 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGM-IVPWCSQVEVL 352 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~-v~~~~pq~~lL 352 (424)
.+.+..+++|+++ ..+.+-+...|.+++..-... . .. +.+. +.....-.++|
T Consensus 136 g~tvgIvG~G~IG-------~~vA~~l~afG~~V~~~~~~~-~------~~-------------~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 136 DFTIGILGAGVLG-------SKVAQSLQTWGFPLRCWSRSR-K------SW-------------PGVQSFAGREELSAFL 188 (312)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCEEEEEeCCC-C------CC-------------CCceeecccccHHHHH
Confidence 3458889999987 345555666777765432211 1 10 1111 11233446789
Q ss_pred ccccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcce-eEeeecCCCccchHHHHHhhh
Q 036740 353 SHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTG-VRVKANEEGIVESDEINRCLE 423 (424)
Q Consensus 353 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G-~~l~~~~~~~~~~~~l~~ai~ 423 (424)
+.+++ ++.|.-.+.-.+ ...|+..+.. ++=| +.++....+-+.++.|.++++
T Consensus 189 ~~aDv--vv~~lPlt~~T~----------------~li~~~~l~~-mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 189 SQTRV--LINLLPNTPETV----------------GIINQQLLEQ-LPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred hcCCE--EEECCCCCHHHH----------------HHhHHHHHhc-CCCCcEEEECCCccccCHHHHHHHHh
Confidence 99998 888866554333 2334555554 4433 333333334555555555554
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.79 E-value=60 Score=31.92 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
++..|+|+..++.|-..-+..||..|.++|++|.+++.+.+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 3556788888999999999999999999999999999876643
No 342
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=39.76 E-value=69 Score=22.89 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=28.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
+++...++.|-..-...+|..|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456667788999999999999999999998877
No 343
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=39.71 E-value=42 Score=30.79 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=29.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc--hhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA--YRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~i~~ 51 (424)
++|.|+-.+..| .++|+.|.++||+|++..-... .+.+..
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~ 42 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTPEKAAELLAA 42 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCChhhhhHHHHH
Confidence 478888777666 4789999999999999975432 344444
No 344
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=39.55 E-value=62 Score=24.97 Aligned_cols=36 Identities=19% Similarity=-0.196 Sum_probs=31.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
++....++..|......++..|.++|++|.++....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCC
Confidence 567777889999999999999999999999997543
No 345
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=39.44 E-value=57 Score=31.73 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=30.0
Q ss_pred CCeE-EEEcC-CCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 6 QPHF-LLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 6 ~~~i-l~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
+|+| +|... |+-|-..-.+.||..|+.+|++|.++=.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 3454 44444 7899999999999999999999998843
No 346
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=39.35 E-value=50 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA 45 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (424)
..+|+++..|.-| ...++.|.+.|++|+++.++..
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~~~ 47 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPEIC 47 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCccC
Confidence 4577777665433 6789999999999999965433
No 347
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=39.31 E-value=77 Score=31.54 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCC--CCCCCCC---CCCcchHHHHHHHHHHHHHHHH
Q 036740 21 NPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSD--GYDDGFN---SKQNDRKHYMSEFKRRSSEALA 95 (424)
Q Consensus 21 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 95 (424)
.-++.+|+.|.+.|+++. ++....+.+.. .|+.+..+.+ ++|+-.. .+..+ . ....++.. ...+
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e-----~GI~v~~Vsk~TgfPEil~GRVKTLHP-~-IhgGiLar--r~~~ 79 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAE-----AGVPVTEVSDYTGFPEMMDGRVKTLHP-K-VHGGILAR--RGDD 79 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHH-----CCCeEEEeecccCCchhhCCccccCCc-h-hhhhhhcC--CCch
Confidence 347799999999999983 56677778888 8998887753 4444322 22232 1 12222221 1112
Q ss_pred HHHHHHhhcCCCCeeEEEeCCC
Q 036740 96 ELITASQNEGGQPFTCLVYPQL 117 (424)
Q Consensus 96 ~~l~~l~~~~~~~~D~vv~D~~ 117 (424)
+ ++++.+..=...|+||++.+
T Consensus 80 ~-~~~l~~~~I~~IDlVvvNLY 100 (511)
T TIGR00355 80 D-DADLEEHGIEPIDLVVVNLY 100 (511)
T ss_pred H-HHHHHHcCCCceeEEEEecc
Confidence 2 33343332247899998844
No 348
>PRK06932 glycerate dehydrogenase; Provisional
Probab=39.20 E-value=1e+02 Score=28.75 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhc
Q 036740 274 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLS 353 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~ 353 (424)
++.+-.|++|.++ +++.+-++..|.+++.. ... ... . ....+.+.+++|+
T Consensus 147 gktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~-~~~--------------------~-~~~~~~~l~ell~ 196 (314)
T PRK06932 147 GSTLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHK-GAS--------------------V-CREGYTPFEEVLK 196 (314)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCC-ccc--------------------c-cccccCCHHHHHH
Confidence 4458889999987 34445556677776642 111 000 0 0123567889999
Q ss_pred cccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeE-eeecCCCccchHHHHHhhh
Q 036740 354 HEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVR-VKANEEGIVESDEINRCLE 423 (424)
Q Consensus 354 ~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~-l~~~~~~~~~~~~l~~ai~ 423 (424)
.+++ ++-|.-.+.- .....|+.++.+ ++=|.. ++....+-++++.|.++++
T Consensus 197 ~sDi--v~l~~Plt~~----------------T~~li~~~~l~~-mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 197 QADI--VTLHCPLTET----------------TQNLINAETLAL-MKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred hCCE--EEEcCCCChH----------------HhcccCHHHHHh-CCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999 8877544321 135567777776 665533 3444345666677766665
No 349
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=39.19 E-value=28 Score=28.86 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc--chhhhcCCCCCCCCceEEEcC
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS--AYRRMANNPTPEDGLSFASFS 65 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~--~~~~i~~~~~~~~gi~~~~~~ 65 (424)
..+|+++-++++||.. |.-|++.|++|++.-.+. ..++.++ .|++..++.
T Consensus 4 ~k~IAViGyGsQG~a~-----AlNLrDSG~~V~Vglr~~s~s~~~A~~-----~Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAH-----ALNLRDSGVNVIVGLREGSASWEKAKA-----DGFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHHHH-----HHHHHHCC-EEEEEE-TTCHHHHHHHH-----TT-ECCEHH
T ss_pred CCEEEEECCChHHHHH-----HHHHHhCCCCEEEEecCCCcCHHHHHH-----CCCeeccHH
Confidence 4689999999999864 677999999999887554 4566677 888765554
No 350
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=38.91 E-value=56 Score=29.74 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=30.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
.+|+|+.=|+-|-..-+++||..|+++|++|.++=
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 46777766899999999999999999999998883
No 351
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=38.90 E-value=3.1e+02 Score=26.35 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=26.1
Q ss_pred CCeEEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLT-FPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
.++|+++. .|..|. .+|+.|.++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 47888886 676664 5788899999999998753
No 352
>PHA02518 ParA-like protein; Provisional
Probab=38.89 E-value=63 Score=27.70 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=31.0
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 8 HFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.|.|... |+-|-..-...||..|+++|++|.++-.+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~ 39 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDP 39 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4556655 788999999999999999999999997653
No 353
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=38.79 E-value=58 Score=31.43 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=30.3
Q ss_pred CCCeE-EEEcC-CCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 5 QQPHF-LLLTF-PIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 5 ~~~~i-l~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
++++| .|... |+-|-..-.+.||..|+.+|++|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34555 45554 789999999999999999999999885
No 354
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.73 E-value=45 Score=28.05 Aligned_cols=29 Identities=3% Similarity=-0.093 Sum_probs=20.4
Q ss_pred CeeEEEeCCCchh--HHHHHHHcCCCcEEEe
Q 036740 108 PFTCLVYPQLLPW--AAEVARAYHLPSALLW 136 (424)
Q Consensus 108 ~~D~vv~D~~~~~--~~~~A~~lgiP~v~~~ 136 (424)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998654422 3444567999988863
No 355
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.30 E-value=33 Score=33.87 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=26.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
|||+++..|--| |.-|.+|+++||+||++-...
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEeccC
Confidence 678877766544 778999999999999997543
No 356
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=38.30 E-value=56 Score=25.82 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=28.1
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHh--cCCCEEEEEec
Q 036740 276 SVIYVAFGTICVLEKRQVEEIARGLLD--SGHPFLWVSRE 313 (424)
Q Consensus 276 ~vvyvs~GS~~~~~~~~~~~~~~~l~~--~~~~~i~~~~~ 313 (424)
.+++++|||......+.+..+.+.++. .+..+-|....
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999886445568888888865 45677787653
No 357
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=38.13 E-value=2.3e+02 Score=23.41 Aligned_cols=30 Identities=10% Similarity=-0.139 Sum_probs=23.7
Q ss_pred CeeEEEeCCCc---hhHHHHHHHcCCCcEEEec
Q 036740 108 PFTCLVYPQLL---PWAAEVARAYHLPSALLWL 137 (424)
Q Consensus 108 ~~D~vv~D~~~---~~~~~~A~~lgiP~v~~~~ 137 (424)
+||+|+..... ..+..+|.++|.|++.-..
T Consensus 83 ~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 83 KPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred CCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 79999966554 4579999999999998433
No 358
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=37.79 E-value=2.6e+02 Score=27.10 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=59.7
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeE-Eecccchh--
Q 036740 273 PKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGM-IVPWCSQV-- 349 (424)
Q Consensus 273 ~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~-v~~~~pq~-- 349 (424)
.+||.|-+| +......-.+++.+.|++.++.+++....+.+.. -|+++.+. ..+- |.+.-.+.
T Consensus 183 ~~kp~I~iT---mfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~---------aME~Li~~--G~~~~VlDlTttEl~ 248 (403)
T PF06792_consen 183 EDKPLIGIT---MFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGR---------AMERLIRE--GQFDGVLDLTTTELA 248 (403)
T ss_pred CCCcEEEEE---CCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchH---------HHHHHHHc--CCcEEEEECcHHHHH
Confidence 456667664 3334456788899999999999988776652211 12333211 1222 22555542
Q ss_pred -hhhccccceeeecccChhHHHHHHhcCCcEeecccccc
Q 036740 350 -EVLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTD 387 (424)
Q Consensus 350 -~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~D 387 (424)
+++. =|..+|-+=+..|...|+|+|+.|-.-|
T Consensus 249 d~l~G------Gv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 249 DELFG------GVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred HHHhC------CCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 2222 2677889999999999999999996544
No 359
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=37.75 E-value=58 Score=28.01 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=32.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
-|+|+...+-|-..-...||..+..+|.+|.+++.+.++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 467777779999999999999999999999999988665
No 360
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=37.75 E-value=75 Score=28.19 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=36.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
.+|+++.=++-|.-.-.-+++.+|++.||+|..+.-+..++
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaD 42 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKAD 42 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcc
Confidence 57899999999999999999999999999999998665443
No 361
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=37.73 E-value=53 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=21.9
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
|||.++ +.||+- +.+|..|+++||+|+.+=...
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 677777 455554 667777999999999886543
No 362
>PRK02399 hypothetical protein; Provisional
Probab=37.69 E-value=3.1e+02 Score=26.60 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=56.1
Q ss_pred CCceEEEEe-cccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCC--eEEecccchhh
Q 036740 274 KSSVIYVAF-GTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEK--GMIVPWCSQVE 350 (424)
Q Consensus 274 ~~~vvyvs~-GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n--~~v~~~~pq~~ 350 (424)
+||.|-+|+ |. ...-.+.+.+.|++.++.+++....+.+.. . |+++. .+. --|.+.-.+..
T Consensus 185 ~kp~Ig~TmfGv----Ttp~v~~~~~~Le~~GyEvlVFHATG~GGr----a-----ME~Li---~~G~~~gVlDlTttEv 248 (406)
T PRK02399 185 DKPLIGLTMFGV----TTPCVQAAREELEARGYEVLVFHATGTGGR----A-----MEKLI---DSGLIAGVLDLTTTEV 248 (406)
T ss_pred CCceEEEecCCC----cHHHHHHHHHHHHhCCCeEEEEcCCCCchH----H-----HHHHH---HcCCceEEEEcchHHH
Confidence 566766643 53 345688899999999999888776652221 1 23332 222 11235555522
Q ss_pred ---hhccccceeeecccChhHHHHHHhcCCcEeecccc
Q 036740 351 ---VLSHEAVGCFVTHCGWSSSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 351 ---lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 385 (424)
++. =|..+|-.=+..|...|+|+|+.|-.
T Consensus 249 ~d~l~G------Gv~sagp~Rl~Aa~~~gIP~Vvs~Ga 280 (406)
T PRK02399 249 CDELFG------GVLAAGPDRLEAAARTGIPQVVSPGA 280 (406)
T ss_pred HHHHhC------cCccCCccHHHHHHHcCCCEEecCCc
Confidence 221 24566888899999999999988844
No 363
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.53 E-value=49 Score=31.00 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
.+|||.|+..|..| ..+|..|+++||+|+++...
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 47899999888777 46788999999999999874
No 364
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.45 E-value=60 Score=25.55 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=33.0
Q ss_pred eEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 8 HFLLLTFP-IQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
-++++..| ..-.+...+-+...|.++|++||++.++...+.++-
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLlev 49 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLLEV 49 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheeeee
Confidence 34555556 445556678889999999999999999877766654
No 365
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=37.31 E-value=56 Score=30.38 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=40.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSD 66 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~ 66 (424)
|||+++..|+-|-. ++-.|.+.||+|+++.-++..+.+.+ .|+.......
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~~g~~V~~~~R~~~~~~l~~-----~GL~i~~~~~ 50 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAKAGHDVTLLVRSRRLEALKK-----KGLRIEDEGG 50 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHhCCCeEEEEecHHHHHHHHh-----CCeEEecCCC
Confidence 68899988888743 67789999999999998887788888 7877765543
No 366
>PRK06835 DNA replication protein DnaC; Validated
Probab=37.27 E-value=50 Score=31.06 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=37.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
..++|+..++.|-..=..++|++|.++|+.|.|++...+...+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 567888888899888889999999999999999998776655543
No 367
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=37.22 E-value=63 Score=28.61 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=29.4
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 8 HFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
.|+|+.. |+-|-..-...||..|+++|++|.++=.+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3555555 78899999999999999999999988543
No 368
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=37.06 E-value=44 Score=29.05 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+.+||++.-+|+-+ ..-...|++.|. +||+|.++.++...+++..
T Consensus 18 ~~k~IllgVtGSIA-Ayk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 18 RKPRILLAASGSVA-AIKFGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 45678777666443 445577999998 5999999999988888765
No 369
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=36.99 E-value=69 Score=29.37 Aligned_cols=76 Identities=12% Similarity=0.213 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccCh
Q 036740 287 VLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGW 366 (424)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~ 366 (424)
..+.+..+.+.+++.+...+.||...++ .. -.++.++++...+-+++.. ||=+.-.
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG-~g---------------------a~rlL~~ld~~~~~~~pK~--~iGySDi 100 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGG-YG---------------------ANRLLPYLDYDLIRANPKI--FVGYSDI 100 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCc-CC---------------------HHHhhhhCCHHHHhhCCeE--EEEecHH
Confidence 3456668889999999999999999887 22 1335566677776677777 8888888
Q ss_pred hHHHHHHhc--CCcEeeccccc
Q 036740 367 SSSLESLVY--GVPVVAFPQWT 386 (424)
Q Consensus 367 gs~~eal~~--GvP~v~~P~~~ 386 (424)
.++.-+++. |++.+.=|...
T Consensus 101 TaL~~~l~~~~g~~t~hGp~~~ 122 (282)
T cd07025 101 TALHLALYAKTGLVTFHGPMLA 122 (282)
T ss_pred HHHHHHHHHhcCceEEECcccc
Confidence 888888764 78877777543
No 370
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.85 E-value=86 Score=25.09 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=34.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
.+|++-+.++-+|-.=-.-++..|.+.|++|+........
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~ 41 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQ 41 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCH
Confidence 4788999999999999999999999999999999865443
No 371
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.81 E-value=2.1e+02 Score=26.31 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECcc--chhhhcCCCCCCCCceEEEcCCC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAIS--AYRRMANNPTPEDGLSFASFSDG 67 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~--~~~~i~~~~~~~~gi~~~~~~~~ 67 (424)
+++||+++.++..+.+.-++. +..+. +++|..+.+.. .....++ .|+.+..++..
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~---~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~ 146 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLW---RWRSGELPVEIAAVISNHDDLRSLVER-----FGIPFHHVPVT 146 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHH---HHHcCCCCcEEEEEEEcChhHHHHHHH-----hCCCEEEeccC
Confidence 789999999988665554443 33332 58888776543 3344455 78988877643
No 372
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=36.69 E-value=59 Score=28.77 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.0
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 8 HFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.|+|... |+-|-..-.+.||..|+++|++|.++=.+.
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~Dp 40 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADE 40 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4555555 788999999999999999999999887543
No 373
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=36.50 E-value=43 Score=31.17 Aligned_cols=33 Identities=24% Similarity=0.113 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
||+|.|+..|..|. .+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG~-----~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWGT-----ALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHHH-----HHHHHHHhCCCEEEEEECC
Confidence 47899998876663 5788899999999998764
No 374
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=36.41 E-value=1.8e+02 Score=30.47 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=21.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
|||+|+..+..+ +..-++|.++||+|..+.
T Consensus 1 mkivf~g~~~~a-----~~~l~~L~~~~~~i~~V~ 30 (660)
T PRK08125 1 MKAVVFAYHDIG-----CVGIEALLAAGYEIAAVF 30 (660)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCcEEEEE
Confidence 789999765443 334478888999998544
No 375
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.30 E-value=1.8e+02 Score=28.40 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=33.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHH-HhCCCEEEEEECccch
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRL-TRIGTRVTFAIAISAY 46 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~ 46 (424)
..++|+..++-|-..-+..||..+ ..+|+.|.+++.+.++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 446777778999999999999876 6789999999988755
No 376
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.85 E-value=73 Score=32.35 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=24.3
Q ss_pred ccChHHHH---HHHHHHHhCCCEEEEEECccch
Q 036740 17 QGHINPSL---QFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 17 ~GH~~p~l---~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
.||+.+++ .+||-++-+||+|.|+|..+-+
T Consensus 22 lGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 22 LGHLYTYLAADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCC
Confidence 39999877 4688888899999999976443
No 377
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=35.72 E-value=70 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=25.3
Q ss_pred CeEEEEcC-CCccC--hHHHHHHHHHHHhCCCEE-EEEECccch
Q 036740 7 PHFLLLTF-PIQGH--INPSLQFARRLTRIGTRV-TFAIAISAY 46 (424)
Q Consensus 7 ~~il~~~~-~~~GH--~~p~l~La~~L~~rGh~V-t~~~~~~~~ 46 (424)
|+++|+-. +-+|+ ..-.+.+|+++.++||+| .++--.+-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV 44 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGV 44 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHH
Confidence 45544433 33444 455788899999999984 665544443
No 378
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=35.69 E-value=1.6e+02 Score=28.12 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=31.4
Q ss_pred eEEecccch---hhhhccccceeeecccChhHHHHHHhcCCcEee
Q 036740 340 GMIVPWCSQ---VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVA 381 (424)
Q Consensus 340 ~~v~~~~pq---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 381 (424)
+.+..+++| +.+|-.|++ -+-. |=-|..-|..+|+|+|=
T Consensus 244 ~~~LPf~~Q~~yD~LLW~cD~--NfVR-GEDSFVRAqWAgkPfvW 285 (371)
T TIGR03837 244 VAVLPFVPQDDYDRLLWACDL--NFVR-GEDSFVRAQWAGKPFVW 285 (371)
T ss_pred EEEcCCCChhhHHHHHHhChh--cEee-chhHHHHHHHcCCCcee
Confidence 344499998 669999998 5555 77899999999999984
No 379
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.67 E-value=59 Score=29.15 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=30.6
Q ss_pred CeEEEEcC-CCccChHHHHHHHHHHH-hCCCEEEEEECcc
Q 036740 7 PHFLLLTF-PIQGHINPSLQFARRLT-RIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~-~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~ 44 (424)
+.|.|... |+-|-..-.+.||..|+ .+||+|.++=.+.
T Consensus 3 ~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDp 42 (259)
T COG1192 3 KIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDP 42 (259)
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 34555555 88999999999999999 6679999996554
No 380
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=35.59 E-value=82 Score=28.55 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=28.2
Q ss_pred CeE-EEEcC-CCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 7 PHF-LLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 7 ~~i-l~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
.|+ +|.+. ++-|-..-.+.||..|++.|++|.++=.
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 444 44444 6778888899999999999999998854
No 381
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=35.43 E-value=67 Score=29.92 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=30.3
Q ss_pred CeEEEEcCCC---ccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 7 PHFLLLTFPI---QGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 7 ~~il~~~~~~---~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
|+|+|+.-|- .-+....+.|..+.++|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 5677776542 234456789999999999999999987655
No 382
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=35.30 E-value=46 Score=33.24 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=25.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEEC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIA 42 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~ 42 (424)
|+|+++..+++.|. |+++|++. |++|.++..
T Consensus 1 mkVLviG~Ggreha-----l~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREHA-----LAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHHH-----HHHHHHhCCCCCEEEEEEC
Confidence 78999999998884 77888876 899888854
No 383
>PRK06487 glycerate dehydrogenase; Provisional
Probab=35.24 E-value=1.4e+02 Score=27.94 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=60.9
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhc
Q 036740 274 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLS 353 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~ 353 (424)
++.+-.+++|.++ +++.+-++..|.+++..-... . + . ...++.-+++|+
T Consensus 148 gktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~--~-------~------------~---~~~~~~l~ell~ 196 (317)
T PRK06487 148 GKTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG--R-------P------------A---RPDRLPLDELLP 196 (317)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC--C-------c------------c---cccccCHHHHHH
Confidence 4458889999987 344555566777776432111 0 0 1 123457788999
Q ss_pred cccceeeecccChhHHHHHHhcCCcEeecccccchhHHHHHHHhhhcceeEe-eecCCCccchHHHHHhhh
Q 036740 354 HEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWTDQGTNAKIIVDFCKTGVRV-KANEEGIVESDEINRCLE 423 (424)
Q Consensus 354 ~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l-~~~~~~~~~~~~l~~ai~ 423 (424)
.+++ ++-|.-.+.- .....|+..+.+ ++=|..+ +....+-++++.|.++++
T Consensus 197 ~sDi--v~l~lPlt~~----------------T~~li~~~~~~~-mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 197 QVDA--LTLHCPLTEH----------------TRHLIGARELAL-MKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred hCCE--EEECCCCChH----------------HhcCcCHHHHhc-CCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999 8877433221 245677777776 6665433 444445667777777765
No 384
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=35.20 E-value=1.6e+02 Score=27.45 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=62.8
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhc
Q 036740 274 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLS 353 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~ 353 (424)
++.+-.|++|.++ +++.+-++..|.+++..-... .. . +. ...+.+.+++|+
T Consensus 145 gktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~d~~~--~~-----------~-------~~--~~~~~~l~ell~ 195 (311)
T PRK08410 145 GKKWGIIGLGTIG-------KRVAKIAQAFGAKVVYYSTSG--KN-----------K-------NE--EYERVSLEELLK 195 (311)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhcCCEEEEECCCc--cc-----------c-------cc--CceeecHHHHhh
Confidence 4558889999987 334444455677766432211 00 0 11 124567889999
Q ss_pred cccceeeecccChhHHHHHHhcCCcEeeccccc--chhHHHHHHHhhhcceeEe-eecCCCccchHHHHHhhh
Q 036740 354 HEAVGCFVTHCGWSSSLESLVYGVPVVAFPQWT--DQGTNAKIIVDFCKTGVRV-KANEEGIVESDEINRCLE 423 (424)
Q Consensus 354 ~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l-~~~~~~~~~~~~l~~ai~ 423 (424)
.+++ ++-| +|... ....|+..+.. ++=|..+ +....+-++++.|.++++
T Consensus 196 ~sDv--v~lh------------------~Plt~~T~~li~~~~~~~-Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 196 TSDI--ISIH------------------APLNEKTKNLIAYKELKL-LKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred cCCE--EEEe------------------CCCCchhhcccCHHHHHh-CCCCeEEEECCCccccCHHHHHHHHH
Confidence 9998 7777 46554 45778888887 7766443 555446777788888775
No 385
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=35.15 E-value=64 Score=29.27 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=30.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
..|.|+.=|+-|-..-+++||-.|+++|++|.++=
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 35677755888999999999999999999998883
No 386
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=34.91 E-value=54 Score=31.94 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|+|.|+..|..| +.+|..|+++||+|+.+-..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 578888766555 67888999999999888643
No 387
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=34.71 E-value=78 Score=28.48 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMA 50 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 50 (424)
.--+++...|+.|...-.+.++...+++|..|.|++.+.....+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELL 67 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHH
Confidence 345778888999999999999999999999999999886655443
No 388
>PLN00016 RNA-binding protein; Provisional
Probab=34.59 E-value=52 Score=31.52 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=25.5
Q ss_pred CCeEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 6 QPHFLLLTF--PIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
+++|+++.. |+.|.+- ..|++.|.++||+|+.++-..
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 457777622 3444444 457789999999999998543
No 389
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=34.35 E-value=47 Score=30.34 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=31.8
Q ss_pred ChhHHH--HHHhcCCcEeecccccchhHHHHH-HHhhhcce
Q 036740 365 GWSSSL--ESLVYGVPVVAFPQWTDQGTNAKI-IVDFCKTG 402 (424)
Q Consensus 365 G~gs~~--eal~~GvP~v~~P~~~DQ~~na~r-v~~~~G~G 402 (424)
|||+++ .|-.+||=++.+-+...|..+|.. +.+ .|.-
T Consensus 82 GWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~-~gl~ 121 (283)
T COG2230 82 GWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA-RGLE 121 (283)
T ss_pred ChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH-cCCC
Confidence 888665 667779999999999999999998 666 8888
No 390
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=34.28 E-value=52 Score=22.59 Aligned_cols=21 Identities=33% Similarity=0.232 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCEEEEEECcc
Q 036740 24 LQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 24 l~La~~L~~rGh~Vt~~~~~~ 44 (424)
+..|..|+++|++|+++-..+
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567889999999999997543
No 391
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=34.24 E-value=1e+02 Score=26.10 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=22.3
Q ss_pred CeeEEEeCC--CchhHHHHHHHcCCCcEEE
Q 036740 108 PFTCLVYPQ--LLPWAAEVARAYHLPSALL 135 (424)
Q Consensus 108 ~~D~vv~D~--~~~~~~~~A~~lgiP~v~~ 135 (424)
++|.|++=. ....+..+|.++|+|+|.+
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 799999432 2367999999999999985
No 392
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=34.18 E-value=3e+02 Score=23.51 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=31.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCC--EEEEEECcc--ch--hhhcCCCCCCCCceEEEcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGT--RVTFAIAIS--AY--RRMANNPTPEDGLSFASFS 65 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~~--~~--~~i~~~~~~~~gi~~~~~~ 65 (424)
|||+++..+..+-.. .+.+.+.+.++ +|.++.++. .. +...+ .|+.+..++
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~-----~gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISNKPDAYGLERAAQ-----AGIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEECCccchHHHHHHH-----cCCCEEEEC
Confidence 578888886665555 55556666655 677655443 21 33445 788776653
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=34.18 E-value=2.5e+02 Score=22.69 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=31.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|.++..++.|-...+..++..|.++|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 67777889999999999999999999999998765
No 394
>PRK13604 luxD acyl transferase; Provisional
Probab=34.14 E-value=87 Score=29.11 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEE
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFA 40 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 40 (424)
+...+++..+..++...+..+|+.|.++|..|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 44677778887788777999999999999988765
No 395
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=34.11 E-value=62 Score=22.79 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCEEEEEECcc
Q 036740 22 PSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 22 p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
--+.+|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45789999999999999998643
No 396
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=34.06 E-value=68 Score=25.69 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=32.6
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 10 LLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 10 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
.++..+..--+.|.+-++...+++|++|+++.+---...+..
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K 48 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRK 48 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhc
Confidence 344556888899999999999999999999987544444444
No 397
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=33.99 E-value=1.3e+02 Score=28.46 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=23.3
Q ss_pred CeeEEEeCCCchhHHHHHHHcCCCcEEEec
Q 036740 108 PFTCLVYPQLLPWAAEVARAYHLPSALLWL 137 (424)
Q Consensus 108 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 137 (424)
+.|++|+. ......+|..+|+|+|.++.
T Consensus 262 ~a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 56999976 35689999999999999765
No 398
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=33.86 E-value=1.8e+02 Score=21.33 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=23.8
Q ss_pred eEEEEeccccc-CCHHHHHHHHHHHHhc--CCCEEEEEe
Q 036740 277 VIYVAFGTICV-LEKRQVEEIARGLLDS--GHPFLWVSR 312 (424)
Q Consensus 277 vvyvs~GS~~~-~~~~~~~~~~~~l~~~--~~~~i~~~~ 312 (424)
+|+++.||-.. .....+..+.+.+++. +..+.+...
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~ 40 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQ 40 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEE
Confidence 78899998765 4455677788887653 345555443
No 399
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=33.81 E-value=1.9e+02 Score=24.59 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=45.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECc-cchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHHHHH
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAI-SAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHYMSE 85 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~-~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
++-+=..+-|-++-...|+++|.++ |+.|.+-++. ...+.+.+... ..+....+|-+ . .
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~D----------~-~----- 84 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPLD----------F-P----- 84 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---S----------S-H-----
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCcc----------C-H-----
Confidence 3333445779999999999999997 8888888753 33333332100 12222223311 1 1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhH--HHHHHHcCCCcEEE
Q 036740 86 FKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWA--AEVARAYHLPSALL 135 (424)
Q Consensus 86 ~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~--~~~A~~lgiP~v~~ 135 (424)
...+..++.+ +||++|.--.-.|. ...|++.|||.+.+
T Consensus 85 ------~~~~rfl~~~------~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 85 ------WAVRRFLDHW------RPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp ------HHHHHHHHHH--------SEEEEES----HHHHHH-----S-EEEE
T ss_pred ------HHHHHHHHHh------CCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 1224455555 78887744345444 56667789999986
No 400
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=33.76 E-value=3.3e+02 Score=25.82 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=42.1
Q ss_pred cccchhhhhccccceeeec------ccChhHHHHHHhcCCcEee-cccccchhHHHHHHHhhhcceeEee
Q 036740 344 PWCSQVEVLSHEAVGCFVT------HCGWSSSLESLVYGVPVVA-FPQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~------HgG~gs~~eal~~GvP~v~-~P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
.|-..+++|...++.++.+ +-+.--+.+||.+|+.+++ =|+..++-.-..++.+-.|+=+.+.
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~ 121 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVN 121 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5667788898888877774 3445778899999999988 5666544443333333255555554
No 401
>PRK05541 adenylylsulfate kinase; Provisional
Probab=33.75 E-value=2.7e+02 Score=22.98 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=36.2
Q ss_pred CCCC-CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 1 MEQQ-QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 1 m~~~-~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
|+.. ++.-|+|...++.|-..-.-.|++.|..+|..+.++..+...+
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 5644 5667788888899999999999999998888887775544433
No 402
>PRK04940 hypothetical protein; Provisional
Probab=33.64 E-value=1.3e+02 Score=25.52 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=24.9
Q ss_pred CeeEEEeCCCc-hhHHHHHHHcCCCcEEEech
Q 036740 108 PFTCLVYPQLL-PWAAEVARAYHLPSALLWLQ 138 (424)
Q Consensus 108 ~~D~vv~D~~~-~~~~~~A~~lgiP~v~~~~~ 138 (424)
+++++|.-.+. +++..+|+++|+|.|.+.+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 45777766666 89999999999999997443
No 403
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=33.61 E-value=1e+02 Score=25.60 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=21.4
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHh
Q 036740 274 KSSVIYVAFGTICVLEKRQVEEIARGLLD 302 (424)
Q Consensus 274 ~~~vvyvs~GS~~~~~~~~~~~~~~~l~~ 302 (424)
.+-.+|+++||......+.++..+..|..
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~ 34 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAA 34 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHh
Confidence 34479999999886566667777777766
No 404
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=33.55 E-value=1.3e+02 Score=26.25 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=19.9
Q ss_pred CeeEEEeC--CCchhHHHHHHHcCCCcEE
Q 036740 108 PFTCLVYP--QLLPWAAEVARAYHLPSAL 134 (424)
Q Consensus 108 ~~D~vv~D--~~~~~~~~~A~~lgiP~v~ 134 (424)
+.|+|+-. .++.-+-.+.+.+|||+|=
T Consensus 174 gAeaIiLGCAGms~la~~Lq~~~gvPVID 202 (230)
T COG4126 174 GAEAIILGCAGMSDLADQLQKAFGVPVID 202 (230)
T ss_pred CCCEEEEcCccHHHHHHHHHHHhCCCccc
Confidence 88888844 4445567788889999885
No 405
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=33.45 E-value=43 Score=29.58 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCEEEEEEC
Q 036740 24 LQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 24 l~La~~L~~rGh~Vt~~~~ 42 (424)
.++|++|+++|++|+++..
T Consensus 29 ~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHCCCEEEEEcC
Confidence 4789999999999998753
No 406
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=33.00 E-value=1.1e+02 Score=26.46 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCCeEEEEcC--CCccChHHHHHHHHHHHh-CCCEEEEEECcc
Q 036740 5 QQPHFLLLTF--PIQGHINPSLQFARRLTR-IGTRVTFAIAIS 44 (424)
Q Consensus 5 ~~~~il~~~~--~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~ 44 (424)
.+++++.+.. ++-|-..-...||..|++ +|++|.++=.+.
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3455544443 788999999999999996 699999986543
No 407
>PRK10818 cell division inhibitor MinD; Provisional
Probab=32.95 E-value=74 Score=28.72 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=29.5
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 9 FLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 9 il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
|+|... |+-|-..-...||..|+++|++|.++=.+.
T Consensus 5 iav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 444443 788999999999999999999998886554
No 408
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=32.89 E-value=2.6e+02 Score=25.44 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcCCCCeeEEEeCCCch--hHHHHHHHcCCCcEEEe
Q 036740 93 ALAELITASQNEGGQPFTCLVYPQLLP--WAAEVARAYHLPSALLW 136 (424)
Q Consensus 93 ~~~~~l~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~ 136 (424)
.+.++.+.+++. +..+|+++.... .+..+|+..|++.+.+.
T Consensus 208 ~l~~l~~~ik~~---~v~~if~e~~~~~~~~~~la~~~g~~v~~ld 250 (282)
T cd01017 208 QLAELVEFVKKS---DVKYIFFEENASSKIAETLAKETGAKLLVLN 250 (282)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCChHHHHHHHHHcCCcEEEec
Confidence 445566666655 899999988773 45779999999987653
No 409
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=32.62 E-value=36 Score=34.50 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=29.1
Q ss_pred chhhhhccccceeeec---ccChh-HHHHHHhcCCcEeecccc
Q 036740 347 SQVEVLSHEAVGCFVT---HCGWS-SSLESLVYGVPVVAFPQW 385 (424)
Q Consensus 347 pq~~lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~ 385 (424)
+..+++..|++ +|. +=|+| +..||+++|+|+|.....
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~ 507 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLS 507 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCc
Confidence 36677888888 655 55655 889999999999998764
No 410
>PRK14974 cell division protein FtsY; Provisional
Probab=32.60 E-value=94 Score=29.34 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
++..|+|+..++-|-..-+..||..|.++|++|.+++.+.++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 345678888899999999999999999999999998877543
No 411
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=32.58 E-value=1.1e+02 Score=26.05 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=22.3
Q ss_pred CeeEEEeCCCc--hhHHHHHHHcCCCcEEE
Q 036740 108 PFTCLVYPQLL--PWAAEVARAYHLPSALL 135 (424)
Q Consensus 108 ~~D~vv~D~~~--~~~~~~A~~lgiP~v~~ 135 (424)
++|+|++=... ..+..+|..+|+|++.+
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 78999943232 67889999999999986
No 412
>PRK06270 homoserine dehydrogenase; Provisional
Probab=32.47 E-value=3e+02 Score=26.02 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=37.0
Q ss_pred chhhhhccccceeeec------ccC---hhHHHHHHhcCCcEee---cccccchhHHHHHHHhhhcceeEee
Q 036740 347 SQVEVLSHEAVGCFVT------HCG---WSSSLESLVYGVPVVA---FPQWTDQGTNAKIIVDFCKTGVRVK 406 (424)
Q Consensus 347 pq~~lL~~~~~~~~I~------HgG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~rv~~~~G~G~~l~ 406 (424)
...++|..+++.++|- |+| ..-+.+||.+|+++|+ -|+...-..-.+..++ .|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEEe
Confidence 4567776554444655 554 4566899999999999 4765433334444555 67666543
No 413
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.44 E-value=86 Score=22.72 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=35.5
Q ss_pred CeEEEEcCCCc--cChHHHHHHHHHHHhCCCEEEEEECc-cchhhhcCCCCCCCCceEEEc
Q 036740 7 PHFLLLTFPIQ--GHINPSLQFARRLTRIGTRVTFAIAI-SAYRRMANNPTPEDGLSFASF 64 (424)
Q Consensus 7 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~~-~~~~~i~~~~~~~~gi~~~~~ 64 (424)
-+|+++|.... .+..-...++..|++.|..|.+-... .....+.... ..|+.|.-+
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~--~~g~~~~ii 60 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADAD--LIGIPYRIV 60 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHH--hcCCCEEEE
Confidence 46788887643 45667889999999999999875432 2222222211 156776644
No 414
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=32.43 E-value=1.6e+02 Score=27.89 Aligned_cols=113 Identities=13% Similarity=-0.002 Sum_probs=61.6
Q ss_pred CCeEEEEcCC--CccChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCC-----CCCCCCCCCcc
Q 036740 6 QPHFLLLTFP--IQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDG-----YDDGFNSKQND 78 (424)
Q Consensus 6 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~ 78 (424)
++||++++.+ +.|=-.-...+.+.+..+|.+|.-+- .-+.-.+.. . +.++... ...+.....+.
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~-~Gy~GL~~~-----~---i~~l~~~~v~~~~~~GGT~lgss 72 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIY-NGYLGLLEG-----D---IKPLTREDVDDLINRGGTFLGSA 72 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEe-cchhhhcCC-----c---ceeccccchhHHHhcCCeEEeeC
Confidence 5789898886 45666667899999999999987665 334434433 1 2222110 01111000111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEE---eCCCchhHHHHHHHcCCCcEEE
Q 036740 79 RKHYMSEFKRRSSEALAELITASQNEGGQPFTCLV---YPQLLPWAAEVARAYHLPSALL 135 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv---~D~~~~~~~~~A~~lgiP~v~~ 135 (424)
.+.+.-.. +..+..++.+++. +.|.+| -|.....+..++++.++|+|.+
T Consensus 73 --R~~~~~~~---e~~~~~~~~l~~~---gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 73 --RFPEFKTE---EGRKVAAENLKKL---GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred --CCCCcccH---HHHHHHHHHHHHc---CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 00000001 1111334444443 677665 5666677899999999999974
No 415
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=32.38 E-value=2.4e+02 Score=21.92 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=23.5
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHhc--CCCEEEE
Q 036740 276 SVIYVAFGTICVLEKRQVEEIARGLLDS--GHPFLWV 310 (424)
Q Consensus 276 ~vvyvs~GS~~~~~~~~~~~~~~~l~~~--~~~~i~~ 310 (424)
.+|+++.||-.....+.+..+.+.++.. ...+-+.
T Consensus 3 ~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~a 39 (126)
T PRK00923 3 GLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVG 39 (126)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4899999996544445677888888763 3345454
No 416
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.26 E-value=78 Score=27.96 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=30.3
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 9 FLLLT-FPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 9 il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
|+|.. -|+-|-..-.+.||..|+++|++|.++=.+.
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 55555 3789999999999999999999999987654
No 417
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=32.20 E-value=78 Score=28.58 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=29.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
.|++..=|+-|...-..+||..|+++|++|.++=
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4556545788999999999999999999998884
No 418
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=32.17 E-value=84 Score=31.14 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=41.8
Q ss_pred cccchhhh---hccccceeeec---ccChh-HHHHHHhcCCc----EeecccccchhHHHHHHHhhhcceeEeeecCCCc
Q 036740 344 PWCSQVEV---LSHEAVGCFVT---HCGWS-SSLESLVYGVP----VVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 412 (424)
Q Consensus 344 ~~~pq~~l---L~~~~~~~~I~---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 412 (424)
+.+++.++ ++.+++ ++. +=|.| +..||+++|+| +|+--+.+-. +. ++-|+.+++.
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-------~~-l~~gllVnP~---- 407 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA-------QE-LNGALLVNPY---- 407 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh-------HH-hCCcEEECCC----
Confidence 56777654 667777 775 44654 77899999999 6665544321 12 2346677653
Q ss_pred cchHHHHHhhh
Q 036740 413 VESDEINRCLE 423 (424)
Q Consensus 413 ~~~~~l~~ai~ 423 (424)
+.++++++|.
T Consensus 408 -d~~~lA~aI~ 417 (456)
T TIGR02400 408 -DIDGMADAIA 417 (456)
T ss_pred -CHHHHHHHHH
Confidence 6677777764
No 419
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=32.12 E-value=3.5e+02 Score=24.30 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEecccchhhhhccccceeeecccChhHHHHH
Q 036740 293 VEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWSSSLES 372 (424)
Q Consensus 293 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~~~~pq~~lL~~~~~~~~I~HgG~gs~~ea 372 (424)
+.+..+++...+.+++..++.+ .+ ..|.........+++-+|--+.+. .|
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~--------~l-----~~f~~~~~~~~~~~Rvlp~~~~~~-----------------~~ 166 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQ--------NL-----AHFVAADAHSHVLARVLPPPDVLA-----------------KC 166 (257)
T ss_pred HHHHHHHHhccCCcEEEecCcc--------ch-----HHHhcCcccceEEEEEcCchHHHH-----------------HH
Confidence 4556666777776766666544 33 334322222244556555433322 34
Q ss_pred HhcCCcE---eecccccchhHHHHHHHhhhcceeEeeecCCCc-cchHHHHHhh
Q 036740 373 LVYGVPV---VAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI-VESDEINRCL 422 (424)
Q Consensus 373 l~~GvP~---v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~-~~~~~l~~ai 422 (424)
+..|+|. |.+=-.+.+.+|.+.+++ .++.+.+.++-.+. -+.+.+..|.
T Consensus 167 ~~~~~p~~~Iia~~GPfs~~~n~all~q-~~id~vItK~SG~~Gg~~~Ki~aA~ 219 (257)
T COG2099 167 EDLGVPPARIIAMRGPFSEEDNKALLEQ-YRIDVVVTKNSGGAGGTYEKIEAAR 219 (257)
T ss_pred HhcCCChhhEEEecCCcChHHHHHHHHH-hCCCEEEEccCCcccCcHHHHHHHH
Confidence 5556664 444235688999999999 89999999874333 4666666654
No 420
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=31.96 E-value=79 Score=31.11 Aligned_cols=37 Identities=32% Similarity=0.336 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
..++|+++..+..| +..|+.|.++|++|++.-.....
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 57899999999988 89999999999999999754443
No 421
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.93 E-value=1e+02 Score=23.83 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=30.5
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 16 IQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
..|....++..++.++++|..|..+|.....+....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 678889999999999999999999997766666555
No 422
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=31.92 E-value=46 Score=29.36 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 19 HINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 19 H~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
|...|-..|++|.++|++|.++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 45667899999999999999998653
No 423
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.71 E-value=98 Score=26.99 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=25.4
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|..-++++|++ +|+.|++- ..|++.|.++||+|++++..
T Consensus 1 ~~~~~~~~vlI--tGasg~iG--~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 1 MGSLMGRVALV--TGAARGLG--RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCCCCEEEE--eCCCchHH--HHHHHHHHHCCCeEEEEeCC
Confidence 44334456665 44566654 56788899999999776643
No 424
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.57 E-value=4e+02 Score=24.24 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=35.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
.-+++|+...+.|-..-+..|+..+..+|+.|.+++.+.++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 35788888889999998999999999999999999987553
No 425
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.50 E-value=1.1e+02 Score=25.43 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=33.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
+++...++-|-......++..|.++|.+|.++..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777889999999999999999999999999877554
No 426
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=31.45 E-value=1e+02 Score=29.46 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
++|+|++. |+.|.+- -.|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 67888876 5555544 4678889999999998874
No 427
>PRK05973 replicative DNA helicase; Provisional
Probab=31.31 E-value=98 Score=27.56 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=34.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhh
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRR 48 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 48 (424)
-+++..-|+.|-..-.+.++...+++|..|.|++.+.....
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~ 106 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQD 106 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Confidence 46677778999999999999999999999999998765543
No 428
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=31.23 E-value=67 Score=30.10 Aligned_cols=99 Identities=15% Similarity=0.021 Sum_probs=55.3
Q ss_pred eEEEEcCCCcc-----ChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCcchHHH
Q 036740 8 HFLLLTFPIQG-----HINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGFNSKQNDRKHY 82 (424)
Q Consensus 8 ~il~~~~~~~G-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
-|++.|..+.| ...-+..|++.|.++|.+|.+++++...+..+... ... +.... + ..+..
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~---~~~-----~~~~~-~--l~g~~---- 240 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIE---ALL-----PGELR-N--LAGET---- 240 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHH---HhC-----Ccccc-c--CCCCC----
Confidence 35555544333 12357899999998999999888766554433210 000 00000 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEech
Q 036740 83 MSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQ 138 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 138 (424)
.+.++..-+. +.|++|+. ......+|..+|+|.|.++..
T Consensus 241 ----------sL~el~ali~-----~a~l~I~~--DSGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 241 ----------SLDEAVDLIA-----LAKAVVTN--DSGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred ----------CHHHHHHHHH-----hCCEEEee--CCHHHHHHHHcCCCEEEEECC
Confidence 1122222221 56999976 356899999999999987553
No 429
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=31.18 E-value=1.6e+02 Score=26.57 Aligned_cols=33 Identities=15% Similarity=-0.016 Sum_probs=24.5
Q ss_pred CCeeEEE-eCCCc-hhHHHHHHHcCCCcEEEechh
Q 036740 107 QPFTCLV-YPQLL-PWAAEVARAYHLPSALLWLQP 139 (424)
Q Consensus 107 ~~~D~vv-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 139 (424)
..||+|| .|... ..+..=|.++|||+|.+.-+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 4688876 66655 456777889999999986553
No 430
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=31.04 E-value=62 Score=24.52 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 21 NPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 21 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
.|.+.|++.|.++|.+|.+.=|--....+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 78999999999999998887654444333
No 431
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=31.03 E-value=79 Score=28.66 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=29.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
+.|.|..=|+-|-..-..+||-.|+++|++|.++=
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 35667744788999999999999999999998883
No 432
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=30.87 E-value=1.6e+02 Score=23.23 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCEEEEEECccch
Q 036740 22 PSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 22 p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
..+...++|.++||.|+++|.-...
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 4666777778999999999965443
No 433
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=30.82 E-value=86 Score=30.10 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=50.0
Q ss_pred Eecccchhhhhccc-----cceeeecccChhHHHHHHhc-----------------CCcEeecccccchhHHHHHHHhhh
Q 036740 342 IVPWCSQVEVLSHE-----AVGCFVTHCGWSSSLESLVY-----------------GVPVVAFPQWTDQGTNAKIIVDFC 399 (424)
Q Consensus 342 v~~~~pq~~lL~~~-----~~~~~I~HgG~gs~~eal~~-----------------GvP~v~~P~~~DQ~~na~rv~~~~ 399 (424)
+++|+-+..=++.+ +.+.++|.||..+.+-|+.+ +.|.|.++-.. ++-+.+.+. ++
T Consensus 84 vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~-~l 161 (373)
T PF00282_consen 84 VIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAAR-IL 161 (373)
T ss_dssp HHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHH-HT
T ss_pred HHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcc-ee
Confidence 34666554434411 24558999999888777532 24566666444 455655666 69
Q ss_pred cceeEee-ecCCCccchHHHHHhhh
Q 036740 400 KTGVRVK-ANEEGIVESDEINRCLE 423 (424)
Q Consensus 400 G~G~~l~-~~~~~~~~~~~l~~ai~ 423 (424)
|+|+..- ..++++++.++|.++|+
T Consensus 162 Glg~~~I~~~~~~~md~~~L~~~l~ 186 (373)
T PF00282_consen 162 GLGVRKIPTDEDGRMDIEALEKALE 186 (373)
T ss_dssp TSEEEEE-BBTTSSB-HHHHHHHHH
T ss_pred eeEEEEecCCcchhhhHHHhhhhhc
Confidence 9996553 34457889999988875
No 434
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=30.81 E-value=56 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=22.6
Q ss_pred CeEEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 7 PHFLLLT-FPIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 7 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
|+|.|+. .+..| ..|++.|+++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 5777774 44433 3678889999999998764
No 435
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=30.73 E-value=73 Score=31.56 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=27.2
Q ss_pred CCCCeEEEEcCCCccChHHHHH-HHHHHHhCCCEEEEEE
Q 036740 4 QQQPHFLLLTFPIQGHINPSLQ-FARRLTRIGTRVTFAI 41 (424)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~-La~~L~~rGh~Vt~~~ 41 (424)
.+.++|+|+..+..| +. +|+.|.++|++|+..=
T Consensus 5 ~~~~~v~viG~G~sG-----~s~~a~~L~~~G~~V~~~D 38 (461)
T PRK00421 5 RRIKRIHFVGIGGIG-----MSGLAEVLLNLGYKVSGSD 38 (461)
T ss_pred CCCCEEEEEEEchhh-----HHHHHHHHHhCCCeEEEEC
Confidence 466789999998877 45 8999999999998754
No 436
>CHL00175 minD septum-site determining protein; Validated
Probab=30.67 E-value=95 Score=28.25 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCeEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTF--PIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+++++.+.. |+-|-..-...||..|+++|++|.++=.+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 445555544 78899999999999999999999888544
No 437
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=30.67 E-value=89 Score=25.81 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=28.6
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 9 FLLLT-FPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 9 il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|+|.. -|+-|-..-...||..|+++|++|.++=.+
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D 37 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDAD 37 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 33444 478899999999999999999999999544
No 438
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=30.67 E-value=47 Score=27.54 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=21.1
Q ss_pred eeecccChh------HHHHHHhcCCcEeeccc
Q 036740 359 CFVTHCGWS------SSLESLVYGVPVVAFPQ 384 (424)
Q Consensus 359 ~~I~HgG~g------s~~eal~~GvP~v~~P~ 384 (424)
++++|+|-| .+.+|...++|||++.-
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 388888876 55699999999999853
No 439
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=30.64 E-value=2.7e+02 Score=25.89 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=23.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 7899986644 3466778888889998877653
No 440
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=30.50 E-value=66 Score=30.54 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=36.7
Q ss_pred CCccChHHHHHHHHHHHh-CCCEEEEEECcc-chhhhcCCCC------CCCCceEEEcCCC
Q 036740 15 PIQGHINPSLQFARRLTR-IGTRVTFAIAIS-AYRRMANNPT------PEDGLSFASFSDG 67 (424)
Q Consensus 15 ~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~-~~~~i~~~~~------~~~gi~~~~~~~~ 67 (424)
--+|++--+.+||+.|++ +|++|++.+.+- ...++..... ...|++.......
T Consensus 9 DNyGDIGV~WRLArqLa~e~g~~VrLwvDdl~af~~i~P~~d~~~~~q~~~gV~I~~W~~~ 69 (371)
T TIGR03837 9 DNYGDIGVCWRLARQLAAEHGHQVRLWVDDLSAFARLCPEVDPDAGVQLVAGVEIRHWRAP 69 (371)
T ss_pred cCCcchHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCCCCcchhhcccCCeEEEECCCc
Confidence 468999999999999997 799999999642 2233322211 1257877777644
No 441
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=30.42 E-value=1e+02 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=28.2
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 9 FLLLT-FPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 9 il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
|.|++ .++-|-..-.+.||..|+++|++|.++-.+...
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 34444 678888889999999999999998888765443
No 442
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=30.40 E-value=1e+02 Score=26.69 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.+++|-+-..|+-|-...||.=|+.|.++|.+|++..-+.
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 4678888889999999999999999999999999876543
No 443
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=30.37 E-value=1.8e+02 Score=25.00 Aligned_cols=48 Identities=13% Similarity=-0.024 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeeEEEeCCC--chhHHHHHHHcCC-CcEEEech
Q 036740 90 SSEALAELITASQNEGGQPFTCLVYPQL--LPWAAEVARAYHL-PSALLWLQ 138 (424)
Q Consensus 90 ~~~~~~~~l~~l~~~~~~~~D~vv~D~~--~~~~~~~A~~lgi-P~v~~~~~ 138 (424)
....++.+.+++.++ +.+||+||+=.- ...|..++..||+ |..++-..
T Consensus 12 I~~~~~~lA~kI~~s-~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~ 62 (192)
T COG2236 12 IHRLCRALAEKIRAS-GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVE 62 (192)
T ss_pred HHHHHHHHHHHHHHc-CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEE
Confidence 445556677777655 679999996443 3678999999998 55555443
No 444
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=30.27 E-value=2e+02 Score=21.29 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=23.2
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhc--CCCEEEEE
Q 036740 277 VIYVAFGTICVLEKRQVEEIARGLLDS--GHPFLWVS 311 (424)
Q Consensus 277 vvyvs~GS~~~~~~~~~~~~~~~l~~~--~~~~i~~~ 311 (424)
+|+++.||........+..+.+.++.. ...+-+..
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 38 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAF 38 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 788999997754445677788888653 34554443
No 445
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.03 E-value=1.4e+02 Score=28.01 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred CCeEEEEcCCCcc-----ChHHHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCCCCCCCC-CCCCcch
Q 036740 6 QPHFLLLTFPIQG-----HINPSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSDGYDDGF-NSKQNDR 79 (424)
Q Consensus 6 ~~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~~~~~~~-~~~~~~~ 79 (424)
+..|+|.|..+.| -..-+..|++.|.++|.+|.++.+....+..+... .+.. ... ......
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~---~~~~---------~~~~l~~k~s- 241 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIA---KGLP---------NAVILAGKTS- 241 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHH---HhcC---------CccccCCCCC-
Confidence 3567777773332 24458899999999999999988875554433311 0110 000 000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEeCCCchhHHHHHHHcCCCcEEEech
Q 036740 80 KHYMSEFKRRSSEALAELITASQNEGGQPFTCLVYPQLLPWAAEVARAYHLPSALLWLQ 138 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 138 (424)
+.++..-+ .+.|++|+- ..+...+|..+|.|+|.++..
T Consensus 242 --------------L~e~~~li-----~~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 242 --------------LEELAALI-----AGADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred --------------HHHHHHHH-----hcCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 12222222 167888866 356899999999999998654
No 446
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=29.87 E-value=1e+02 Score=26.42 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=29.4
Q ss_pred CCeEEEEcCCCccChHHHHH-HHHHHHh-CCCEEEEEECc
Q 036740 6 QPHFLLLTFPIQGHINPSLQ-FARRLTR-IGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~-La~~L~~-rGh~Vt~~~~~ 43 (424)
||+|+++-...+||..-+.. +++.+.+ .|++|.++.-.
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 36788888877999999886 4666666 89999888643
No 447
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=29.80 E-value=1.7e+02 Score=24.76 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=53.5
Q ss_pred hHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEE
Q 036740 263 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMI 342 (424)
Q Consensus 263 ~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v 342 (424)
.++-+++.+.+ ...|+-|. ......++.++..+.+-.++=++....... ..+ . .-.+..++
T Consensus 22 ~~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l~~~----~~~----~----~~~~~~i~ 82 (178)
T TIGR00730 22 AELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGLFSG----EVV----H----QNLTELIE 82 (178)
T ss_pred HHHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhhhhh----hcc----C----CCCCceEE
Confidence 45667776543 45555453 233455677777776666655443220000 000 0 00123344
Q ss_pred ecccch-hhhhccccceeeecccChhHHHHHHh---------cCCcEeecc
Q 036740 343 VPWCSQ-VEVLSHEAVGCFVTHCGWSSSLESLV---------YGVPVVAFP 383 (424)
Q Consensus 343 ~~~~pq-~~lL~~~~~~~~I~HgG~gs~~eal~---------~GvP~v~~P 383 (424)
+..... ..++-..+-.+++--||.||+-|.+. +.+|++++=
T Consensus 83 ~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 83 VNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred ECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 444443 33443333334677799999988733 599998874
No 448
>PRK03094 hypothetical protein; Provisional
Probab=29.69 E-value=50 Score=23.67 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCEEEEEEC
Q 036740 23 SLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~ 42 (424)
+-.+.+.|.++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999987654
No 449
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.65 E-value=1.6e+02 Score=27.05 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=31.0
Q ss_pred CeEEecccch---hhhhccccceeeecccChhHHHHHHhcCCcEee
Q 036740 339 KGMIVPWCSQ---VEVLSHEAVGCFVTHCGWSSSLESLVYGVPVVA 381 (424)
Q Consensus 339 n~~v~~~~pq---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 381 (424)
++.+..|+|| +.+|--|++ -+-. |--|..-|..+|+|.+=
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflW 281 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLW 281 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEE
Confidence 3445599998 558888888 4444 77899999999999973
No 450
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=29.55 E-value=63 Score=29.97 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
.|||+++..|+-|=+ +|-.|.+.||+|+++...
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 589999999988854 466688999999999864
No 451
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=29.35 E-value=92 Score=29.25 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=32.1
Q ss_pred eEEE--EcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 8 HFLL--LTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 8 ~il~--~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
-|.+ ++.++.|-+--.+.|++.|.++|++|.+++-..
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 4556 678999999999999999999999999998654
No 452
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=29.24 E-value=65 Score=30.76 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=36.9
Q ss_pred CCccChHHHHHHHHHHHhC-CCEEEEEECcc-chhhhcCCCCC------CCCceEEEcCCCC
Q 036740 15 PIQGHINPSLQFARRLTRI-GTRVTFAIAIS-AYRRMANNPTP------EDGLSFASFSDGY 68 (424)
Q Consensus 15 ~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~-~~~~i~~~~~~------~~gi~~~~~~~~~ 68 (424)
--+|++--+.+||+.|+++ |++|++.+.+- ...++...... ..|++........
T Consensus 9 DNfGDIGVcWRLArqLa~e~g~~VrLwvDdl~af~~i~P~~~~~~~~q~~~gv~i~~W~~~~ 70 (374)
T PF10093_consen 9 DNFGDIGVCWRLARQLAAEHGQQVRLWVDDLAAFARICPDLDPELSQQTIQGVEIRHWDAPF 70 (374)
T ss_pred cCCcchHHHHHHHHHHHHHhCCeEEEEECCHHHHHHhCCCCCcccccceECCeEEEecCCcc
Confidence 4689999999999999987 99999999642 22333332211 2567766665444
No 453
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=29.20 E-value=3.2e+02 Score=27.87 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=68.0
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCeEEe-cccchhhhhc
Q 036740 275 SSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKGMIV-PWCSQVEVLS 353 (424)
Q Consensus 275 ~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~~v~-~~~pq~~lL~ 353 (424)
+.+|.+.+|... ..+.+.|.+.+.+++..-... . .. +... ..+..++ +-.-+.++|.
T Consensus 418 ~hiiI~G~G~~G-------~~la~~L~~~g~~vvvId~d~-~------~~-----~~~~---~~g~~~i~GD~~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVG-------SLLGEKLLAAGIPLVVIETSR-T------RV-----DELR---ERGIRAVLGNAANEEIMQ 475 (558)
T ss_pred CCEEEECCChHH-------HHHHHHHHHCCCCEEEEECCH-H------HH-----HHHH---HCCCeEEEcCCCCHHHHH
Confidence 458889888765 457788888888876654221 0 10 2222 1233333 4444555554
Q ss_pred -----cccceeeecccC--hh-HHHHHHhc---CCcEeecccccchhHHHHHHHhhhcceeEeeecCCCccchHHHHHhh
Q 036740 354 -----HEAVGCFVTHCG--WS-SSLESLVY---GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIVESDEINRCL 422 (424)
Q Consensus 354 -----~~~~~~~I~HgG--~g-s~~eal~~---GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai 422 (424)
+++. ++++=+. -| .+..++.. .++.++ ..+.+.+...+++ .|+=..+.++ +...+++.+.+
T Consensus 476 ~a~i~~a~~-viv~~~~~~~~~~iv~~~~~~~~~~~iia---r~~~~~~~~~l~~-~Gad~vv~p~---~~~a~~i~~~l 547 (558)
T PRK10669 476 LAHLDCARW-LLLTIPNGYEAGEIVASAREKRPDIEIIA---RAHYDDEVAYITE-RGANQVVMGE---REIARTMLELL 547 (558)
T ss_pred hcCccccCE-EEEEcCChHHHHHHHHHHHHHCCCCeEEE---EECCHHHHHHHHH-cCCCEEEChH---HHHHHHHHHHh
Confidence 3332 1333222 22 23333333 333333 3456789999998 9999999887 67777777766
Q ss_pred h
Q 036740 423 E 423 (424)
Q Consensus 423 ~ 423 (424)
.
T Consensus 548 ~ 548 (558)
T PRK10669 548 E 548 (558)
T ss_pred c
Confidence 4
No 454
>PRK12377 putative replication protein; Provisional
Probab=29.10 E-value=81 Score=28.29 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=35.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
..++|...++.|-..=..++|..|.++|+.|.|++.+.....+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH
Confidence 357777778999998899999999999999988887665555443
No 455
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=29.02 E-value=64 Score=30.67 Aligned_cols=36 Identities=17% Similarity=-0.028 Sum_probs=24.6
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 11 LLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 11 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
|+..++.|...-...+++...++|+.|.++..++..
T Consensus 15 iLG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del~ 50 (353)
T PF06032_consen 15 ILGSGGGGDPYIGRLMAEQALREGGPVRLVDPDELP 50 (353)
T ss_dssp HTTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG--
T ss_pred EEEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHcC
Confidence 345788898888889999999999999999987663
No 456
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.91 E-value=64 Score=30.17 Aligned_cols=32 Identities=16% Similarity=-0.032 Sum_probs=26.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|+|.++..|+.|- .+|..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G~-----ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFGT-----AIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHHH-----HHHHHHHHCCCeEEEEecC
Confidence 5788888887764 5788899999999988863
No 457
>PLN02891 IMP cyclohydrolase
Probab=28.76 E-value=1.4e+02 Score=29.91 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCEEEEEECccchhhhcCCCCCCCCceEEEcCC--CCCCC
Q 036740 22 PSLQFARRLTRIGTRVTFAIAISAYRRMANNPTPEDGLSFASFSD--GYDDG 71 (424)
Q Consensus 22 p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~gi~~~~~~~--~~~~~ 71 (424)
-+..+|+.|.+.|.++ +++.-..+.+.. .|+....+.+ ++|+-
T Consensus 34 gi~~fAk~L~~~gveI--iSTgGTak~L~e-----~Gi~v~~Vsd~TgfPEi 78 (547)
T PLN02891 34 DLALLANGLQELGYTI--VSTGGTASALEA-----AGVSVTKVEELTNFPEM 78 (547)
T ss_pred CHHHHHHHHHHCCCEE--EEcchHHHHHHH-----cCCceeeHHhccCCchh
Confidence 3678999999988764 566667777788 8999998864 45543
No 458
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=28.76 E-value=19 Score=24.83 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=17.9
Q ss_pred cccchhhhhccccceeeecccChh
Q 036740 344 PWCSQVEVLSHEAVGCFVTHCGWS 367 (424)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG~g 367 (424)
.-.|+..+|+..+..++||+.|.|
T Consensus 23 tp~P~~n~LsNg~y~~mvt~~G~G 46 (66)
T PF06204_consen 23 TPAPWVNVLSNGSYGVMVTNSGSG 46 (66)
T ss_dssp -SS--EEEE-SSSEEEEEETTSBE
T ss_pred CCCCEEEEeeCCcEEEEEcCCCce
Confidence 356788899999999999999987
No 459
>PRK08309 short chain dehydrogenase; Provisional
Probab=28.71 E-value=82 Score=26.55 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=22.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|+++++. ++ | +. ..+++.|.++|++|++++..
T Consensus 1 m~vlVtG-Gt-G-~g--g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIG-GT-G-ML--KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEEC-cC-H-HH--HHHHHHHHHCcCEEEEEECC
Confidence 4554443 33 5 32 46999999999999988743
No 460
>PRK08939 primosomal protein DnaI; Reviewed
Probab=28.46 E-value=75 Score=29.56 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=37.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
..+.+...++.|-..=+.++|.+|.++|..|+|+..+.+...+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 457788888999999999999999999999999988766655544
No 461
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=28.44 E-value=1e+02 Score=22.21 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.3
Q ss_pred ccChhHHHHHHhcCCcEeeccc
Q 036740 363 HCGWSSSLESLVYGVPVVAFPQ 384 (424)
Q Consensus 363 HgG~gs~~eal~~GvP~v~~P~ 384 (424)
+|-..-+.|++++|+|+|.-..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~ 30 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS 30 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh
Confidence 5556689999999999998764
No 462
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=28.44 E-value=6.1e+02 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=24.3
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 16 IQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
.-|-..-+..|++.|+++|.+|..+-+-
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4688888999999999999999888653
No 463
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=28.39 E-value=2.2e+02 Score=21.42 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=30.2
Q ss_pred CeEEEEcC--CCccC-hHHHHHHHHHHHhCC---CEEEEEECccchhhhcC
Q 036740 7 PHFLLLTF--PIQGH-INPSLQFARRLTRIG---TRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~--~~~GH-~~p~l~La~~L~~rG---h~Vt~~~~~~~~~~i~~ 51 (424)
|+|+++.. |.... ..-.+.++..+...| |+|.++........+.+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~ 51 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLALK 51 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGGBT
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHHHh
Confidence 34555554 33333 677788899999999 99999988776655544
No 464
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=28.34 E-value=1.3e+02 Score=27.40 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=29.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
-++++++.+. =+-|++.+++.|.++|++|+++...+..
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 4677777544 4889999999999999999988765443
No 465
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=28.29 E-value=1.1e+02 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=26.2
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCEEEEE
Q 036740 10 LLLTFPIQGHINPSLQFARRLTRIGTRVTFA 40 (424)
Q Consensus 10 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 40 (424)
+++..|..++-.-+..+++.|+++|+.|..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~ 32 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAF 32 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 5666677777778999999999999999888
No 466
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.22 E-value=1.2e+02 Score=29.43 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=36.5
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY 46 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 46 (424)
+-.|+|+...+-|-..-+..||..|..+|+.|.+++.+.++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 45778888899999999999999999999999999987665
No 467
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=28.18 E-value=1.3e+02 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=34.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
+++...|+.|-..-.+.++...++.|..|.|++.+...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 56777789999999999999999999999999987655443
No 468
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=28.04 E-value=1e+02 Score=26.64 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=28.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
|.++.=|+-|-..-...||..|+++|++|.++=
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD 35 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVG 35 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEe
Confidence 566666888999999999999999999998884
No 469
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.04 E-value=48 Score=30.11 Aligned_cols=29 Identities=14% Similarity=0.144 Sum_probs=23.9
Q ss_pred cccceeeecccChhHHHHHHh------cCCcEeeccc
Q 036740 354 HEAVGCFVTHCGWSSSLESLV------YGVPVVAFPQ 384 (424)
Q Consensus 354 ~~~~~~~I~HgG~gs~~eal~------~GvP~v~~P~ 384 (424)
.+++ +|+-||-||+..|+. .++|++.+-.
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 3455 999999999999976 5899998764
No 470
>PRK12827 short chain dehydrogenase; Provisional
Probab=27.96 E-value=1.3e+02 Score=26.25 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=24.5
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
|..-+.+++++. |+.|.+- ..+|+.|.++||+|+++.
T Consensus 1 ~~~~~~~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 1 MASLDSRRVLIT--GGSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCcCCCEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEc
Confidence 333344565544 3445554 578999999999998865
No 471
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=27.90 E-value=1.3e+02 Score=26.64 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
++++|+++.. .|. --..+++.|.++||+|+.++-
T Consensus 16 ~~~~ilItGa--sG~--iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 16 KTKTVFVAGA--TGR--TGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cCCeEEEECC--CcH--HHHHHHHHHHhCCCEEEEEec
Confidence 5677776653 332 235678889999999988764
No 472
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=27.78 E-value=1.8e+02 Score=23.46 Aligned_cols=97 Identities=10% Similarity=0.166 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEECccchhhhcCCCCCCC-CceEEEcCCCCCCCCCCCCcchHH
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRI--GTRVTFAIAISAYRRMANNPTPED-GLSFASFSDGYDDGFNSKQNDRKH 81 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~-gi~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
.+|+|++.. .-.+=.-++.+|+.|.+. |+++ ++++...+.+.. . |+.+..+..+ +.+ ++.
T Consensus 3 ~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~-----~~Gi~v~~vi~~-~~g----g~~--- 65 (142)
T PRK05234 3 ARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQE-----ATGLDVTRLLSG-PLG----GDQ--- 65 (142)
T ss_pred cCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHh-----ccCCeeEEEEcC-CCC----Cch---
Confidence 567776666 445567789999999999 9995 455566667777 6 8877655111 000 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCeeEEEe--CCCc--------hhHHHHHHHcCCCcEEE
Q 036740 82 YMSEFKRRSSEALAELITASQNEGGQPFTCLVY--PQLL--------PWAAEVARAYHLPSALL 135 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~D~vv~--D~~~--------~~~~~~A~~lgiP~v~~ 135 (424)
.+++.+.. .++|+||. |... .....+|-.++||++.-
T Consensus 66 --------------~i~~~I~~---g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 66 --------------QIGALIAE---GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred --------------hHHHHHHc---CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 23333333 38899986 3222 13466788899999873
No 473
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.67 E-value=1.2e+02 Score=22.44 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=24.9
Q ss_pred CeeEEE--eCCCc----hhHHHHHHHcCCCcEEEechhhHHH
Q 036740 108 PFTCLV--YPQLL----PWAAEVARAYHLPSALLWLQPALVF 143 (424)
Q Consensus 108 ~~D~vv--~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~~ 143 (424)
++|+|| +|... ..+...|.+.++|++.....+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 668775 67655 2357788889999998875555433
No 474
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=27.54 E-value=57 Score=23.43 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCEEEEEECcc
Q 036740 23 SLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 23 ~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
+-.+.+.|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4468899999999999887654
No 475
>PRK06756 flavodoxin; Provisional
Probab=27.36 E-value=1.3e+02 Score=24.28 Aligned_cols=37 Identities=5% Similarity=0.135 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCccChHHHH-HHHHHHHhCCCEEEEEEC
Q 036740 6 QPHFLLLTFPIQGHINPSL-QFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~~ 42 (424)
+|+|+++=...+||..-+. .|++.|.++|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 4677777666899998865 568888889999887654
No 476
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=27.30 E-value=1e+02 Score=27.89 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=29.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
.|+++.=|+-|-..-++.||..|+++|++|.++=
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3677766888999999999999999999998883
No 477
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=27.19 E-value=71 Score=30.90 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=35.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 7 PHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
.||++...++-. ....+.+++.|.++|++|.++-++.....+..
T Consensus 5 k~ill~v~gsia-ayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p 48 (392)
T COG0452 5 KRILLGVTGSIA-AYKSVELVRLLRRSGAEVRVVMTESARKFITP 48 (392)
T ss_pred ceEEEEecCchh-hhhHHHHHHHHhhCCCeeEEEcchhhhhhcCc
Confidence 377777665543 45668999999999999999999998888877
No 478
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=27.08 E-value=1.1e+02 Score=29.67 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=28.6
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEE
Q 036740 8 HFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAI 41 (424)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~ 41 (424)
.|.|... |+-|-..-.+.||..|+.+|++|.++=
T Consensus 108 vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 108 VIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 3445555 788999999999999999999999883
No 479
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=27.05 E-value=1.1e+02 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=36.8
Q ss_pred CCCeEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEECccchhhhcC
Q 036740 5 QQPHFLLLTF-PIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRMAN 51 (424)
Q Consensus 5 ~~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 51 (424)
+..||+++.+ -+-|-..-.+.|.++|.+||.++.|+.|.+.-=.+..
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~ 158 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAG 158 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHS
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEec
Confidence 4467777777 4889999999999999999999999999877766654
No 480
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=26.76 E-value=1.5e+02 Score=25.29 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred eEEEeCCCc-hhHHHHHHHcCCCcEEEech
Q 036740 110 TCLVYPQLL-PWAAEVARAYHLPSALLWLQ 138 (424)
Q Consensus 110 D~vv~D~~~-~~~~~~A~~lgiP~v~~~~~ 138 (424)
.++|...+. +++..+|+++++|.|.+.+.
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 466655555 78899999999999887544
No 481
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.64 E-value=93 Score=28.87 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchh
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYR 47 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 47 (424)
+|||+|+.+|.++ ...-++|.+.||+|.-+.+...++
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tqpdkp 37 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQPDKP 37 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeCCCCc
Confidence 5899999998654 455677888999998888765543
No 482
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.57 E-value=3.2e+02 Score=24.48 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=59.9
Q ss_pred ChhHHhhhhcCCCCCceEEEEecccccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCccCCCCchhHHHHHHHHhCCCe
Q 036740 261 SKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVSRESDNKDKDKDKGEDDVMMKYKEELNEKG 340 (424)
Q Consensus 261 ~~~~~~~~l~~~~~~~vvyvs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~n~ 340 (424)
+-++..+++.+.+. ..||++.||-. +..+.. ....+.++++-+-.. ... .++ + .+.|+
T Consensus 117 ~~~eA~~~l~~~~~-~~iflttGsk~------L~~f~~-~~~~~~r~~~RvLp~-~~~----~~g------~---~~~~i 174 (249)
T PF02571_consen 117 SYEEAAELLKELGG-GRIFLTTGSKN------LPPFVP-APLPGERLFARVLPT-PES----ALG------F---PPKNI 174 (249)
T ss_pred CHHHHHHHHhhcCC-CCEEEeCchhh------HHHHhh-cccCCCEEEEEECCC-ccc----cCC------C---ChhhE
Confidence 34778888865542 26999999833 444444 444556666655443 111 111 1 12566
Q ss_pred EEe-cccch---hhhhccccceeeecc--cChhH---HHHHHhcCCcEeec
Q 036740 341 MIV-PWCSQ---VEVLSHEAVGCFVTH--CGWSS---SLESLVYGVPVVAF 382 (424)
Q Consensus 341 ~v~-~~~pq---~~lL~~~~~~~~I~H--gG~gs---~~eal~~GvP~v~~ 382 (424)
+.. +...+ .+++++-+++++||- ||.|+ +..|...|+|+|++
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 655 43343 568888888889985 45522 44678899999885
No 483
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=26.51 E-value=81 Score=30.06 Aligned_cols=35 Identities=26% Similarity=0.169 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.+++|+++-.+..| +..|-.|+++|++|+++-...
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 57889999988777 889999999999999987544
No 484
>PRK07952 DNA replication protein DnaC; Validated
Probab=26.47 E-value=98 Score=27.70 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=33.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 8 HFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
-+++...++.|-..=..+||..|.++|+.|.|++.......+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 467777789999999999999999999999998755444433
No 485
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.34 E-value=94 Score=28.70 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccch--hhhcCCCCCCCCceEEEcC
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAY--RRMANNPTPEDGLSFASFS 65 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~i~~~~~~~~gi~~~~~~ 65 (424)
+..+|+++.++++||.. |.-|++.|.+|++..-+... +.... .|++..++.
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~-----dGf~V~~v~ 69 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKE-----DGFKVYTVE 69 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHh-----cCCEeecHH
Confidence 45689999999999987 45689999999998865433 45555 788876664
No 486
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=26.32 E-value=1.5e+02 Score=25.97 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=26.6
Q ss_pred CeEEEEcCC----CccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 7 PHFLLLTFP----IQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 7 ~~il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
.||+++..+ ......=++..-..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 367766541 12244456677788999999999999754
No 487
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=26.26 E-value=4.6e+02 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=31.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccc
Q 036740 9 FLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISA 45 (424)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (424)
|+++..|+.|-..-.-.|++.|...|.+|.++..+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6788889999999999999999999999888865443
No 488
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.24 E-value=2.3e+02 Score=21.69 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=33.6
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEEECccch-hhhcCCCCCCCCceEEEcCCCC
Q 036740 14 FPIQGHINPSLQFARRLTRIGTRVTFAIAISAY-RRMANNPTPEDGLSFASFSDGY 68 (424)
Q Consensus 14 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~i~~~~~~~~gi~~~~~~~~~ 68 (424)
..-.|-..-++..++.++++|..|..+|..... +...+ .|+..+.+|++.
T Consensus 50 iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~~~~~~-----~~~~~~~~p~~~ 100 (119)
T cd05017 50 VSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLEMARE-----HGVPVIIIPKGL 100 (119)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-----cCCcEEECCCCC
Confidence 334566677888888889999999888854322 22333 566777777654
No 489
>PRK11914 diacylglycerol kinase; Reviewed
Probab=26.22 E-value=1.2e+02 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.9
Q ss_pred eecccChhHHHHHH----hcCCcEeeccc
Q 036740 360 FVTHCGWSSSLESL----VYGVPVVAFPQ 384 (424)
Q Consensus 360 ~I~HgG~gs~~eal----~~GvP~v~~P~ 384 (424)
+|--||=||+.|++ ..++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999999887 45799999995
No 490
>PRK08163 salicylate hydroxylase; Provisional
Probab=26.18 E-value=78 Score=30.37 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
|. ++++|+++..+-.| +.+|..|+++|++|+++--.
T Consensus 1 ~~--~~~~V~IvGaGiaG-----l~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 1 MT--KVTPVLIVGGGIGG-----LAAALALARQGIKVKLLEQA 36 (396)
T ss_pred CC--CCCeEEEECCcHHH-----HHHHHHHHhCCCcEEEEeeC
Confidence 66 67889999887654 67788899999999998643
No 491
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=26.11 E-value=4.6e+02 Score=24.51 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=23.9
Q ss_pred CeeEEEeCCCchhHHHHHHHcCCCcEEEech
Q 036740 108 PFTCLVYPQLLPWAAEVARAYHLPSALLWLQ 138 (424)
Q Consensus 108 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 138 (424)
+.|++|+. ......+|..+|+|.|.++..
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFGP 288 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEECC
Confidence 56999977 356899999999999997653
No 492
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=26.10 E-value=68 Score=32.10 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 1 MEQQQQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
|++...++|.|+..+..| .++|+.|+++||+|++.-.
T Consensus 1 ~~~~~~~~IG~IGLG~MG-----~~mA~nL~~~G~~V~V~NR 37 (493)
T PLN02350 1 MASAALSRIGLAGLAVMG-----QNLALNIAEKGFPISVYNR 37 (493)
T ss_pred CCCCCCCCEEEEeeHHHH-----HHHHHHHHhCCCeEEEECC
Confidence 777778899999888777 4789999999999998853
No 493
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.04 E-value=1.2e+02 Score=27.02 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=23.9
Q ss_pred CCCeEEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEEC
Q 036740 5 QQPHFLLLT-FPIQGHINPSLQFARRLTRIGTRVTFAIA 42 (424)
Q Consensus 5 ~~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 42 (424)
..++|+++. .|. -=..-+-.....|+++||+|++++-
T Consensus 9 ~~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 9 DPLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cCCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEc
Confidence 456665554 332 2223455667778999999999983
No 494
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=26.01 E-value=1.1e+02 Score=26.52 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECcc
Q 036740 5 QQPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAIS 44 (424)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 44 (424)
+..+|+++..|..| ...++.|.++|++||++.+..
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCC
Confidence 34578887765544 567889999999999998653
No 495
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=25.96 E-value=60 Score=30.08 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=30.9
Q ss_pred hhccccceeeecccChhHHHHHHh----cCCcEeecccccchh
Q 036740 351 VLSHEAVGCFVTHCGWSSSLESLV----YGVPVVAFPQWTDQG 389 (424)
Q Consensus 351 lL~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~ 389 (424)
.|..-++..+|.=||.||+..|.. +++|+|.+|-+.|..
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDND 128 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDND 128 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCC
Confidence 455567777999999999977753 799999999887643
No 496
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=25.95 E-value=1.6e+02 Score=26.28 Aligned_cols=38 Identities=8% Similarity=-0.093 Sum_probs=30.1
Q ss_pred eEEEEc--CCCccChHHHHHHHHHHHhCCCEEEEEECccc
Q 036740 8 HFLLLT--FPIQGHINPSLQFARRLTRIGTRVTFAIAISA 45 (424)
Q Consensus 8 ~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 45 (424)
+|.++. -++-|-......||..|+++|++|.++-.+..
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 444443 47889999999999999999999999866543
No 497
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=25.75 E-value=1.4e+02 Score=26.10 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCeEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEECc
Q 036740 6 QPHFLLLTFP-IQGHINPSLQFARRLTRIGTRVTFAIAI 43 (424)
Q Consensus 6 ~~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 43 (424)
+..|++++=+ ..+...+.....++|+++|++|.++.|.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 4567777777 6888899999999999999999999987
No 498
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=25.68 E-value=1.5e+02 Score=29.98 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEECccchhhhcCCC
Q 036740 21 NPSLQFARRLTRIGTRVTFAIAISAYRRMANNP 53 (424)
Q Consensus 21 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~ 53 (424)
.+.=.+++.|..+|++|.+++..+..+-+.+.+
T Consensus 41 ~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp 73 (515)
T TIGR00467 41 ITADAIARALRDSGSEARFIYIADNYDPLRKVY 73 (515)
T ss_pred hHHHHHHHHHHHcCCCEEEEEEEcCCccccccc
Confidence 455578999999999999999888776666654
No 499
>PRK08181 transposase; Validated
Probab=25.67 E-value=1.1e+02 Score=27.90 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEECccchhhh
Q 036740 6 QPHFLLLTFPIQGHINPSLQFARRLTRIGTRVTFAIAISAYRRM 49 (424)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 49 (424)
.-.++|+..++.|-..=..+++.++.++|+.|.|++.......+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 34578887888888888888888888889888888765544443
No 500
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=25.67 E-value=64 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=24.1
Q ss_pred ccccceeeecccChhHHHHHHhc----CCcEeeccc
Q 036740 353 SHEAVGCFVTHCGWSSSLESLVY----GVPVVAFPQ 384 (424)
Q Consensus 353 ~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~ 384 (424)
..+++ +|+-||-||+.+++.. ++|++.+-.
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH 95 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 34566 9999999999999763 789887664
Done!