Your job contains 1 sequence.
>036741
MSNNKTPIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISLHL
KKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGV
LKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRV
ARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEP
LRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA
CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL
PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHAL
RTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLP
SYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLA
DLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE
GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG
VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE
TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA
QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE
LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK
LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG
VHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLR
EVLGSPYFFN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036741
(1030 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q8VWF8 - symbol:RPOT2 "DNA-directed RNA polymer... 3776 0. 1
UNIPROTKB|Q93Y94 - symbol:RPOT1 "DNA-directed RNA polymer... 3513 0. 2
UNIPROTKB|P69242 - symbol:RPOT3 "DNA-directed RNA polymer... 3037 1.1e-316 1
TAIR|locus:2047515 - symbol:SCA3 "SCABRA 3" species:3702 ... 2945 6.2e-307 1
DICTYBASE|DDB_G0267416 - symbol:rpmA "DNA-dependent RNA p... 1390 3.3e-147 2
SGD|S000001858 - symbol:RPO41 "Mitochondrial RNA polymera... 1260 3.6e-143 4
ASPGD|ASPL0000068622 - symbol:AN7609 species:162425 "Emer... 1015 1.2e-140 3
POMBASE|SPAC26H5.12 - symbol:rpo41 "mitochondrial RNA pol... 1253 2.2e-135 2
CGD|CAL0005126 - symbol:RPO41 species:5476 "Candida albic... 1138 2.6e-131 4
ZFIN|ZDB-GENE-050208-458 - symbol:si:dkey-21e2.1 "si:dkey... 1256 5.4e-130 2
UNIPROTKB|F1PCF7 - symbol:POLRMT "DNA-directed RNA polyme... 1273 9.3e-130 1
UNIPROTKB|K7EKS3 - symbol:POLRMT "DNA-directed RNA polyme... 1256 5.9e-128 1
UNIPROTKB|O00411 - symbol:POLRMT "DNA-directed RNA polyme... 1256 5.9e-128 1
UNIPROTKB|J9P8Y8 - symbol:POLRMT "DNA-directed RNA polyme... 1255 7.6e-128 1
RGD|1304599 - symbol:Polrmt "polymerase (RNA) mitochondri... 1251 2.0e-127 1
MGI|MGI:1915843 - symbol:Polrmt "polymerase (RNA) mitocho... 1214 1.7e-123 1
UNIPROTKB|E1BZ13 - symbol:POLRMT "DNA-directed RNA polyme... 1190 5.8e-121 1
UNIPROTKB|E1BCZ0 - symbol:POLRMT "DNA-directed RNA polyme... 1188 9.5e-121 1
FB|FBgn0261938 - symbol:mtRNApol "mitochondrial RNA polym... 1099 3.3e-117 2
WB|WBGene00013680 - symbol:Y105E8A.23 species:6239 "Caeno... 894 1.1e-99 2
GENEDB_PFALCIPARUM|PF11_0264 - symbol:PF11_0264 "DNA-depe... 550 3.3e-96 4
UNIPROTKB|Q8IIB0 - symbol:PF11_0264 "DNA-directed RNA pol... 550 3.3e-96 4
CGD|CAL0002343 - symbol:orf19.6499 species:5476 "Candida ... 473 3.8e-75 4
UNIPROTKB|Q5AH39 - symbol:CaO19.13852 "DNA-directed RNA p... 473 3.8e-75 4
UNIPROTKB|K7ESD1 - symbol:POLRMT "DNA-directed RNA polyme... 252 2.7e-20 1
>UNIPROTKB|Q8VWF8 [details] [associations]
symbol:RPOT2 "DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial" species:4096 "Nicotiana sylvestris"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AB058957 EMBL:AB058958
EMBL:AJ302019 ProteinModelPortal:Q8VWF8 Uniprot:Q8VWF8
Length = 1020
Score = 3776 (1334.3 bits), Expect = 0., P = 0.
Identities = 728/1017 (71%), Positives = 821/1017 (80%)
Query: 19 PVCXXXXXXXXXXKPTIRFPSPEKISSVMWRNVAKQAISLHLKKP-FS---RAYSFLGIS 74
P+ KPT +P S +MWRN+ KQ S +K FS R YSFLG
Sbjct: 7 PISLTIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFG 66
Query: 75 QDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVLKNDNFWCPRGYAT 134
QDSI +D KF L + +G +GE L ++++ R N+NF C + YA+
Sbjct: 67 QDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYAS 126
Query: 135 VAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-ARGMGSGKYRMLK 193
VAEA + GMG KY+ LK
Sbjct: 127 VAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLK 186
Query: 194 MRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253
RQVK+ETEAWE+AA EY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IA+EQE C
Sbjct: 187 RRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCS 246
Query: 254 MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313
K K AYA YF QLPADMMAVITMHKLMGLLMTGG+HG ARVVQAA +IGDAIEQEVRI
Sbjct: 247 QGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRI 306
Query: 314 HKFLXXXXXXXXXXXXXXXXXXXSNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF 373
H FL VT EQEKLRKKVT+L+KKQKL AV +IV+ QDD
Sbjct: 307 HNFLEKTKKQKAEKDKQKED---GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDS 363
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
KPWGQDARAKVGSR+I+LL QTAYIQ PA+QLA PPDI PAF H++RTV+KETK S++
Sbjct: 364 KPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRR 423
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKWTGYDKG H +LPSYVMRTHGA+QQR
Sbjct: 424 YGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQR 483
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
+ VKR + QL+PVFEALDTLGNTKWR+N RVLSV+DRIW+ GGRLADLVDR+D PLPE+
Sbjct: 484 EAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEE 543
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
P+TEDEA KW+WKV++VKKENRERHSQRCDIELKL+VARKMKDEE F+YPHNVDFRGR
Sbjct: 544 PDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGR 603
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYPMHP+LNHLGSD+CRG+LEFAEGR LG+SGL WLKIHLANL+AGGV+KLS EGR+ FT
Sbjct: 604 AYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFT 663
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
ENH+DDIFDS+DKPLEGRRWWL AEDPFQCLAVCINL+EA+RSSSPET +SHIPVHQDGS
Sbjct: 664 ENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGS 723
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAARVL I++RDAQRDPA FPDA+RA
Sbjct: 724 CNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRA 783
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
++L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA +++ELFGA+CYAAKVTL
Sbjct: 784 RVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTL 843
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
TALGEMF+AAR IM+WLGECAKIIASEN+PVRWTTPLGLPVVQPYRK+GRH +KTSLQIL
Sbjct: 844 TALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQIL 903
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
TLQRETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVACR+AGL FAGVHDSYWTHACDVD
Sbjct: 904 TLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVD 963
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
++NRILREKFVELYE PI E LL+SFQ S+P L+FPPLPERGDFD+R+VL SPYFFN
Sbjct: 964 KLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020
>UNIPROTKB|Q93Y94 [details] [associations]
symbol:RPOT1 "DNA-directed RNA polymerase 1, mitochondrial"
species:4096 "Nicotiana sylvestris" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
EMBL:AB058956 EMBL:AB058954 EMBL:AJ416568 ProteinModelPortal:Q93Y94
Uniprot:Q93Y94
Length = 1002
Score = 3513 (1241.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 655/848 (77%), Positives = 741/848 (87%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
GMG GKY +L+ RQ+K+ETEAWE+AA EY+ELLMDMCEQKLAPNLPYMKSLFLGWFEPLR
Sbjct: 160 GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 219
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
DAIA EQ+ C K++ AYAP+FDQLPA+MMAVITMHKLMGLLMTGG G ARVVQAA
Sbjct: 220 DAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASH 279
Query: 303 IGDAIEQEVRIHKFLXXXXXXXXXXXXXXXXXXXSNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG+AIE E RIH+FL + E+E++RKKV L+KKQKL
Sbjct: 280 IGEAIEHEARIHRFLEKTKKSNALSGDLEDT---PGDIMKERERVRKKVKILMKKQKLQQ 336
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR+IVK QDD KPWGQD KVG R+I++L +TAYIQ P DQL D PPDI PAF H L+T
Sbjct: 337 VRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKT 396
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
V ET GS++YGVI+C+PLV KGL++TARHMVIPYMPMLVPP W GYDKGA+ FLPSY
Sbjct: 397 V--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSY 454
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+MRTHGAKQQR+ VKR PKKQLEPVF+ALDTLGNTKWR+N +VL ++DRIW+ GGRLADL
Sbjct: 455 IMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADL 514
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR DVPLPE+P+ EDEAQ+RKW+WKV+ VKKEN ERHSQRCDIELKL+VARKMKDE+GF
Sbjct: 515 VDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGF 574
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLKIHLAN+Y GGVD
Sbjct: 575 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVD 634
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS+EGR+AF+ENH++DIFDSA++PLEG+RWWL AEDPFQCLA CIN+ EALRS SPET
Sbjct: 635 KLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETA 694
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
IS++P+HQDGSCNGLQHYAALGRDTLGAAAVNLVA +KPADVYSGIAARVL I++RDA +
Sbjct: 695 ISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAK 754
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DPA P+ +RA+LL++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG ++ ELF
Sbjct: 755 DPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELF 814
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
A+CYAAK TLTALGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPLGLPVVQPYRKLG
Sbjct: 815 AAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLG 874
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH +KTSLQILTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+++GL+FAGVH
Sbjct: 875 RHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVH 934
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHA DVD+MN+ILREKFVELY+ PI ENLL+SFQ+SFP L FPPLPERGDFDLREV
Sbjct: 935 DSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREV 994
Query: 1023 LGSPYFFN 1030
L SPYFFN
Sbjct: 995 LESPYFFN 1002
Score = 50 (22.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVK-FVCL 88
MWR ++KQA S + A LG SQ S K + CL
Sbjct: 1 MWRYISKQAYSRKFRNSHDSA--LLGFSQYSSSFGKTRPLQCL 41
>UNIPROTKB|P69242 [details] [associations]
symbol:RPOT3 "DNA-directed RNA polymerase 3, chloroplastic"
species:4096 "Nicotiana sylvestris" [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:AB084950 EMBL:AB084951 EMBL:AJ302020
ProteinModelPortal:P69242 Uniprot:P69242
Length = 977
Score = 3037 (1074.1 bits), Expect = 1.1e-316, P = 1.1e-316
Identities = 569/845 (67%), Positives = 679/845 (80%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
+Y ML+ RQ+K ETEAWE+ EYREL +MCE+KLAPNLPY+K L LGWFEPLR AI K
Sbjct: 139 RYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEK 198
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA-RVVQAACIIGDA 306
EQ KH+ A+AP+ D LPAD MAVI MHKLMGLLM GG+ R +VVQAA IG A
Sbjct: 199 EQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMA 258
Query: 307 IEQEVRIHKFLXXXXXXXXXXXXXXXXXXXSNTVTTEQEKLRKKVTDLIKKQKLPAVRRI 366
+E EVRIH FL S E LRK+V LIK+ ++ VR++
Sbjct: 259 VENEVRIHNFLEKTKKLQKHMTGAQSQEDMSR----ETMILRKRVKSLIKRNRVVEVRKL 314
Query: 367 VKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKE 426
+K ++ + WG+D +AK+G R++ELLT+TAY+Q P DQ AD PPDI PAF H R +++
Sbjct: 315 MKSEEP-ESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRD 373
Query: 427 T-KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
K KKYGVIEC+PLV+ G++RT + M+IPY+PMLVPP KW GYDKG + FLPSY+MR
Sbjct: 374 PGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMR 433
Query: 486 THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
THG+++Q+D V+ P KQ++ V+EALDTLG+TKWRVN R+LSV++ IW+ GG +A LVDR
Sbjct: 434 THGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDR 493
Query: 546 NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
DVP+PE ++D +++KW+W+VR KK N+E HSQRCD ELKLSVARK+KDEEGFYYP
Sbjct: 494 KDVPIPEL-HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYP 552
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HN+DFRGRAYPMHP+LNHL SDLCRGILEFAEGR LGKSGL WLKIHLA+LYAGG++KL
Sbjct: 553 HNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLC 612
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
++ RLAF ENH+DDI DSA+ PL G RWWL AEDPFQCLA CINL+EAL+SSSP T SH
Sbjct: 613 YDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSH 672
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
+P+HQDGSCNGLQHYAALGRD++ AAAVNLVA +KPADVY+ IA RV II+ D+ +DPA
Sbjct: 673 LPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPA 732
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
P+AL AKLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G ++ LF AS
Sbjct: 733 TDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTAS 792
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHT 905
CYAAKVTL ALGE+FQAARG M+WLG+CAK+IASENQPVRWTTPLGLPVVQPY K RH
Sbjct: 793 CYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHV 852
Query: 906 VKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
++TSLQ+L LQRE + V V++QRTAFPPNFVHSLDGSHMMMTAVACR AGL FAGVHDS+
Sbjct: 853 IRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSF 912
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGS 1025
WTHACDVD+MNRILREKFVELY MPI E+LL+SFQ S+P L FPPLP+RGDFDL EVL S
Sbjct: 913 WTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLES 972
Query: 1026 PYFFN 1030
PYFFN
Sbjct: 973 PYFFN 977
>TAIR|locus:2047515 [details] [associations]
symbol:SCA3 "SCABRA 3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005967
GO:GO:0003899 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:Y08722 EMBL:Y08463 IPI:IPI00536028
PIR:G84632 RefSeq:NP_179989.1 UniGene:At.21683
ProteinModelPortal:O24600 SMR:O24600 IntAct:O24600 STRING:O24600
PRIDE:O24600 EnsemblPlants:AT2G24120.1 GeneID:816946
KEGG:ath:AT2G24120 GeneFarm:2877 TAIR:At2g24120
HOGENOM:HOG000241996 InParanoid:O24600 OMA:TQAKLGS PhylomeDB:O24600
ProtClustDB:CLSN2683020 Genevestigator:O24600 Uniprot:O24600
Length = 993
Score = 2945 (1041.8 bits), Expect = 6.2e-307, P = 6.2e-307
Identities = 551/848 (64%), Positives = 672/848 (79%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K+ L+ RQVK ETEAWE+ +EYR+L +MCE+ LAPNLPY+K +FLGWF+PL+D I +
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217
Query: 248 EQ--ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
EQ ++ + K + AYAP+ + LPAD MAVI MHK+MGL+M+G E G +VVQAA IG
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGI 277
Query: 306 AIEQEVRIHKFLXXXXXXXXXXXXXXXXXXXSNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
AIEQEVRIH FL S E++ LRK+V LI+++++ +
Sbjct: 278 AIEQEVRIHNFLKRTRKNNAGD---------SQEELKEKQLLRKRVNSLIRRKRIIDALK 328
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+VK + KPWG+ +AK+GSR++ELL + AY+Q P Q D+ P+ PAF H +TV+K
Sbjct: 329 VVKSEGT-KPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTK 387
Query: 426 ETKGGSK---KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
GSK +YGVIEC+ L+L GL+++A+HM+IPY+PMLVPP +W GYDKG + FLPSY
Sbjct: 388 YP--GSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSY 445
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+MRTHG+K+Q+D +K K VFEALDTLGNTKWRVN +L V++R+W+ GG +A L
Sbjct: 446 IMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGL 505
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
V+R DVP+PEKP +ED +L+ W+W R K NRERHS RCD+ELKLSVARKMKDEEGF
Sbjct: 506 VNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGF 565
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGR LGKSGLHWLKIHLANLYAGGV+
Sbjct: 566 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVE 625
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLSH+ RLAF ENHLDDI DSA+ P+ G+RWWLKAEDPFQCLA C+ LT+AL+S SP +
Sbjct: 626 KLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSV 685
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISH+P+HQDGSCNGLQHYAALGRD+ AAAVNLVA EKPADVYS I+ RV I+++D+ +
Sbjct: 686 ISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSK 745
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP P A AK+L++QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G +E LF
Sbjct: 746 DPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLF 805
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
A+CY+AKVTL ALGE+F+AAR IMSWLG+CAKIIAS+N PVRW TPLGLPVVQPY +
Sbjct: 806 AAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSE 865
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH ++TSLQ+L LQRE V V++QRTAFPPNFVHSLDG+HMMMTAVACR+AGL FAGVH
Sbjct: 866 RHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVH 925
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVD MNRILREKFVELY PI E+LL SFQ+S+P LVFPP+P+RGDFDL+EV
Sbjct: 926 DSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEV 985
Query: 1023 LGSPYFFN 1030
L S YFFN
Sbjct: 986 LKSQYFFN 993
>DICTYBASE|DDB_G0267416 [details] [associations]
symbol:rpmA "DNA-dependent RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0006390 "transcription
from mitochondrial promoter" evidence=IDA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA;IC] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=ISS] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
dictyBase:DDB_G0267416 GenomeReviews:CM000150_GR GO:GO:0005759
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003899 GO:GO:0006390
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
HSSP:P00573 EMBL:AF361480 EMBL:AY040092 RefSeq:XP_647347.1
ProteinModelPortal:Q95NZ8 EnsemblProtists:DDB0191106 GeneID:8616158
KEGG:ddi:DDB_G0267416 OMA:FINIDEQ ProtClustDB:CLSZ2729360
Uniprot:Q95NZ8
Length = 950
Score = 1390 (494.4 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
Identities = 272/579 (46%), Positives = 378/579 (65%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKW 519
PM++ P+ W +G + +MRT+G+ Q T+ + + ++ AL+ LG T W
Sbjct: 386 PMVIKPLPWITPTEGPYLHYKVPIMRTNGSAMQLRTLVDS---DMSLIYRALNILGETPW 442
Query: 520 RVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET---EDEAQLRKWQWKVRNVKKEN 576
+N + +V+ W+ GG + D+ R D PE + + EA+ ++ K + +K N
Sbjct: 443 VINRDLYNVILEAWANGGNIGDIPKRTDFEYPEISDDMLFDHEARKELYK-KEQRIKSLN 501
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
HS RCD KL VARK D Y+PHN+DFRGR+YP+ P+LNHLGSD CR +L+F
Sbjct: 502 FNLHSLRCDTNYKLEVARKFLDHT-LYFPHNIDFRGRSYPIPPHLNHLGSDFCRSLLKFE 560
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+ LG+ GL WLKIH+ANLY GVDK+ RLAFTE ++++IFDS D PL G +WWLK
Sbjct: 561 KSLPLGEKGLEWLKIHVANLY--GVDKIPLNERLAFTERNMENIFDSVDSPLNGNKWWLK 618
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
A++P+Q LA C+ LT+A+RS P F+S++P+HQDG+CNGLQHYAALG D GA VNL+
Sbjct: 619 ADNPWQTLAACMELTKAIRSGKPAEFLSNLPIHQDGTCNGLQHYAALGGDVWGAEKVNLL 678
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
+ P DVYS +A V I++ DA+ + A+ L +VDRKLVKQTVMTSVYGV
Sbjct: 679 PSDCPQDVYSSVAQLVEQIVEEDAKNGDEI------AQFFLGKVDRKLVKQTVMTSVYGV 732
Query: 817 TYIGARDQIKRRLKERGAPMEEAE--LFGASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
TYIGAR+QI+ + E+ + ++ E +F +S Y K T +L MF AR IM W+ +CA
Sbjct: 733 TYIGAREQIENAILEKFSDLDLDEDFIFKSSTYITKNTFASLNNMFVGARSIMKWMSDCA 792
Query: 875 KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRETEKVMVKRQRTAF 931
+IA V W TPLGLPVVQPY+K G++ ++T L+ I+ + +V RQR+AF
Sbjct: 793 TLIAKSGHCVTWNTPLGLPVVQPYKKGGKYNIRT-LECDFIVVHNDDLLQVDSNRQRSAF 851
Query: 932 PPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 991
PPNF+HSLD +HM +TA+ C G+T++ VHDSYWTHA VD MN ILR +FVEL++ PI
Sbjct: 852 PPNFIHSLDSTHMFLTAMTCYDQGITYSSVHDSYWTHASTVDRMNDILRNEFVELHKQPI 911
Query: 992 FENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
E LL+ FQ +P + FP LP++G+ D+ +V S YFF+
Sbjct: 912 LERLLEWFQVRYPDIKFPKLPKKGELDINKVKESRYFFH 950
Score = 69 (29.3 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE 248
L+ Q +E EA + A YR+L++D + + ++ + + W E L + + K+
Sbjct: 150 LRKIQTLLEFEAIDDAVTRYRDLMLDSKGKSFVTSFKSIRDVLMQWNEGLTEKVQKD 206
>SGD|S000001858 [details] [associations]
symbol:RPO41 "Mitochondrial RNA polymerase" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA;IMP] [GO:0005759 "mitochondrial matrix" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IDA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
SGD:S000001858 GO:GO:0003677 EMBL:D50617 EMBL:BK006940
GO:GO:0042645 GO:GO:0000002 GO:GO:0003899 GO:GO:0006390
GO:GO:0034245 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 OrthoDB:EOG4M0J8T
EMBL:M17539 PIR:S56218 RefSeq:NP_116617.1 ProteinModelPortal:P13433
DIP:DIP-2431N IntAct:P13433 MINT:MINT-500319 STRING:P13433
PaxDb:P13433 PeptideAtlas:P13433 PRIDE:P13433 EnsemblFungi:YFL036W
GeneID:850507 KEGG:sce:YFL036W HOGENOM:HOG000248537 OMA:HLIQDWL
NextBio:966215 Genevestigator:P13433 GermOnline:YFL036W
Uniprot:P13433
Length = 1351
Score = 1260 (448.6 bits), Expect = 3.6e-143, Sum P(4) = 3.6e-143
Identities = 274/659 (41%), Positives = 384/659 (58%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQ-SPADQLADAPPD-IFPAFTHALRTVSKETKGGSKK 433
W Q RA++GS +I +L Q A + D + A PAF H + GSK
Sbjct: 592 WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAPAFAHGY-----QYHNGSK- 645
Query: 434 YGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
GV++ + +++ L ER + +PMLV P W + G + + S ++RT + +
Sbjct: 646 LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPE 705
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRND--V 548
Q +K ++ V++ L+ LG T W VN +V V+ ++W+ G D+ D V
Sbjct: 706 QVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMV 765
Query: 549 PLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
P P+ D + LR W+ +V+ + + S RCD KL +AR E+ Y+PHN+
Sbjct: 766 LPPAPPKNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNL 824
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGRAYP+ P+ NHLG+D+ RG+L F G+ LG SGL WLKIHL+NL+ G DKL +
Sbjct: 825 DFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKD 882
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
R+AFTE+HL DI DSA+ PL G RWW A+ P+Q LA C L E ++ +PE FISH PV
Sbjct: 883 RVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPV 942
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
HQDG+CNGLQHYAALG D GA VNLV +KP DVY+ +A V ++ A++
Sbjct: 943 HQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKGDE--- 999
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYA 848
AK+L ++ RK+VKQTVMT+VYGVTY+GA QI ++L +E+ F S Y
Sbjct: 1000 ---NAKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSPIFDDRKESLDF--SKYL 1054
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------NQP-----VRWTTPL 890
K +A+ E+F +A I WLGE AK I+ N+P V WTTPL
Sbjct: 1055 TKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPL 1114
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRE--TEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
GLP+VQPYR+ + V+T+LQ + + V +RQ+ PPNF+HSLD SHM+++A
Sbjct: 1115 GLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSA 1174
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
C K GL FA VHDSYWTHA D+D MN +LRE+F++L+E+ + L + F + + V
Sbjct: 1175 AECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLHEVDLVLRLKEEFDQRYKNYV 1233
Score = 88 (36.0 bits), Expect = 3.6e-143, Sum P(4) = 3.6e-143
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 241 LRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
L + ++ ++ ++ +++ Y PY + M VIT+ +L+ L TGG R +A
Sbjct: 476 LSEKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAV 535
Query: 301 CIIGDAIEQEVRIHKFL 317
+G AIE E R + L
Sbjct: 536 ISVGKAIEMEFRSEQVL 552
Score = 61 (26.5 bits), Expect = 3.6e-143, Sum P(4) = 3.6e-143
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 1006 LVFPPLPERGDFDLREVLGSPYFFN 1030
L P +P +GDFD+ + S YFF+
Sbjct: 1327 LRLPEIPPKGDFDVTVLRNSQYFFS 1351
Score = 38 (18.4 bits), Expect = 3.6e-143, Sum P(4) = 3.6e-143
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIE 390
++ + K + A R + K +FK Q+A++ S IE
Sbjct: 548 SEQVLKSESQAFRDVNKKSPEFKKLVQNAKSVFRSSQIE 586
>ASPGD|ASPL0000068622 [details] [associations]
symbol:AN7609 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001044 "mitochondrial RNA polymerase regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0003677 GO:GO:0006351 EMBL:BN001304
EMBL:AACD01000130 GO:GO:0003899 eggNOG:COG5108 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 OrthoDB:EOG4M0J8T
RefSeq:XP_680878.1 STRING:Q5AVS1 EnsemblFungi:CADANIAT00000724
GeneID:2869348 KEGG:ani:AN7609.2 HOGENOM:HOG000167182 OMA:LQAEDPW
Uniprot:Q5AVS1
Length = 1391
Score = 1015 (362.4 bits), Expect = 1.2e-140, Sum P(3) = 1.2e-140
Identities = 259/731 (35%), Positives = 384/731 (52%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNL----PYMKSLFLGWFEPLRDAIA---K 247
RQ ++E + + A N +R+ + +Q+ P++ + L W L I K
Sbjct: 350 RQQQLEADVMKSAVNRWRQ--ENKIQQQFQPDVFENGKQLGPLLRQWNADLVVRIEEEFK 407
Query: 248 EQERCRMA-------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
E E+ R A + +V Y PY + + +A +T+ + L G ++ A
Sbjct: 408 EIEKARTASMITDEVRERVDYGPYLRMVKPEELASLTILTTINNLTRNGLDKGIKLAPLA 467
Query: 301 CIIGDAIEQEVRIHKFLXXXXXXXXXXXXXXXXXXXSNTVTTEQEKLRKKVTDLIKKQKL 360
IG+ + +EV + + + +Q L +K D +K
Sbjct: 468 VAIGNDVYEEVALQRMVERRKKEMNSAH---------RVKLIKQIFLGRKDRDKLKGINW 518
Query: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP----D---IF 413
+ ++ ++ W +AKVG+ ++ LL A + P ++ A A D +
Sbjct: 519 KNALKSMEQEEPDIVWATAIKAKVGAVLMSLLYDVAKVPVPVNEAAAAKKIKRRDEVVMQ 578
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYD 472
P F H+ + T G ++ G I NP ++K L R A ++ +PML P W GY
Sbjct: 579 PVFQHSYQI----TWG--RRTGYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYK 632
Query: 473 KGAHFFLPS-YVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLD 530
GA+F+ + +V T G Q VK + L+ + + LD LG T W +N V +V+
Sbjct: 633 DGAYFYHQNLFVRSTPGESLQPTYVKAALENDGLKMIRKGLDILGGTGWVINRDVFNVML 692
Query: 531 RIWSCGGRLADLVDRN-DVPLPEKPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIE 587
W+ G +ADL + D+P+P KP E+ EA+ ++W KVR+++ + HSQRC
Sbjct: 693 EAWNTGEPIADLAPLDPDLPIPPKPSPEEGYEAE-KEWHTKVRDIENQRGGYHSQRCFQN 751
Query: 588 LKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH 647
++ VAR +E FY PHN+DFRGRAYP+ PYLN + +D RG+L F+E + LG+SGL
Sbjct: 752 FQMEVARSYLNET-FYLPHNMDFRGRAYPIPPYLNQMAADNARGLLLFSEAKPLGESGLR 810
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC 707
WLKI +ANL G DK S R F +HLDD+ DSA+ L GRRWWL+AEDP+QCLA C
Sbjct: 811 WLKIQIANL--AGFDKASLSEREQFAMDHLDDVLDSANNGLHGRRWWLQAEDPWQCLAAC 868
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
L AL+ +P + S +P+HQDGSCNGLQHYAALG D LGA VNL ++P+DVYS
Sbjct: 869 CELRNALQHPNPTEYASRLPIHQDGSCNGLQHYAALGGDKLGAQQVNLEPSDRPSDVYSA 928
Query: 768 IAARVLVIIQRDA-QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A V + +A Q DP AK+L ++ RK+VKQTVMT+VYGVT+IGA QI+
Sbjct: 929 VAQYVKEAVATEAAQGDPI-------AKMLEGKITRKVVKQTVMTNVYGVTFIGAMKQIR 981
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRW 886
++L + + E + Y A+ ALG MF+ AR I WLG+ A I +++ P
Sbjct: 982 KQLANHYPELSDHEKKTGAIYIARKVFQALGTMFEGARDIQHWLGDSANRI-TQSLPPEQ 1040
Query: 887 TTPLGLPVVQP 897
L V+ P
Sbjct: 1041 IEDLAKEVLNP 1051
Score = 344 (126.2 bits), Expect = 1.2e-140, Sum P(3) = 1.2e-140
Identities = 66/120 (55%), Positives = 87/120 (72%)
Query: 884 VRWTTPLGLPVVQPYR-KLGRHTVKTSLQILTLQRETEKVMVKRQRT--AFPPNFVHSLD 940
V WTTPLGLPVVQPYR +L R V TS Q L++ + + V R++ AFPPNF+HSLD
Sbjct: 1081 VIWTTPLGLPVVQPYRNRLPRRVV-TSFQSLSVVEQDSRYCVTRRKQLQAFPPNFIHSLD 1139
Query: 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
+HMM++A+AC +AGLTF+ VHDS+WTH DVD MNRILRE FV+++ + + L F+
Sbjct: 1140 ATHMMLSAIACHQAGLTFSAVHDSFWTHPSDVDSMNRILREAFVQMHSDDVIKRLAAEFE 1199
Score = 53 (23.7 bits), Expect = 1.2e-140, Sum P(3) = 1.2e-140
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1008 FPPLPERGDFDLREVLGSPYFFN 1030
F P+P +G +D+ + S YFF+
Sbjct: 1369 FRPVPTKGAWDVSRIRESKYFFS 1391
Score = 38 (18.4 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 568 KVRNVKKENRE----RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNH 623
K+ + +E+RE R Q+ + ++ S + + E D + P L
Sbjct: 334 KIPAMDEESREVYQQRRQQQLEADVMKSAVNRWRQENKIQQQFQPDVFENGKQLGPLLRQ 393
Query: 624 LGSDLCRGILE-FAE 637
+DL I E F E
Sbjct: 394 WNADLVVRIEEEFKE 408
>POMBASE|SPAC26H5.12 [details] [associations]
symbol:rpo41 "mitochondrial RNA polymerase Rpo41"
species:4896 "Schizosaccharomyces pombe" [GO:0000002 "mitochondrial
genome maintenance" evidence=ISS] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005759 "mitochondrial matrix"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 PomBase:SPAC26H5.12 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005759 GO:GO:0000002 GO:GO:0003899
GO:GO:0006390 eggNOG:COG5108 Gene3D:1.10.287.260 PANTHER:PTHR10102
PIR:T38431 RefSeq:NP_594459.2 STRING:O13993
EnsemblFungi:SPAC26H5.12.1 GeneID:2542687 OrthoDB:EOG4M0J8T
NextBio:20803735 GO:GO:0001044 Uniprot:O13993
Length = 1154
Score = 1253 (446.1 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 300/869 (34%), Positives = 452/869 (52%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
+ ++L+ + E W+ +E+ E +++ ++ N+ SLF W+ L +
Sbjct: 288 RQKLLEKSAILSAAEVWK---SEH-ESVLNRGNLQVPKNV---SSLFYSWYVQLEQLFKE 340
Query: 248 E---------QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR-ARVV 297
E E ++ Y P+ L + +A +T+ ++ L T + R ARV
Sbjct: 341 EISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIMEV-AQLSTNPRYDRGARVT 399
Query: 298 QAACIIGDAIEQEVRIHKFLXXXXXXXXXXXXXXXXXXXSNTVTTEQEKLRKKVTDLIKK 357
+G + E+E FL + + K R+ V +L
Sbjct: 400 TLLGGLGRSFERE-----FLSEQIQRQEKNKSYKDKKRLKE-LFNDPRKFRQAVKNL--- 450
Query: 358 QKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAP--PDIFPA 415
+L R + W KVGS + LL A I+ A L+ A
Sbjct: 451 -RLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIEVTAKDLSTGGILKQEVAA 509
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGA 475
F H + + G + +E L+ + +E+ H + +PMLV P WT + G
Sbjct: 510 FVHTYQYSNGRKVGMIVPH--VEFYKLLSRDIEKPHLHPQL--LPMLVTPKPWTSWIDGG 565
Query: 476 HFFLPSYVMRTHGAKQQRD-TVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+++ ++R GA +Q D +K + QL+ +F+A+ +LG WR+N R+ +VL RIW+
Sbjct: 566 YYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLGKVSWRINQRLFNVLIRIWN 625
Query: 535 CGGRLADLVDRN-DVPLPEKPETEDEAQLRK-WQWKVRNVKKENRERHSQRCDIELKLSV 592
G + + R +P P+ + + W + + + HSQRCD KL +
Sbjct: 626 SGEKFLSIPPREVKCDMPPYPKNSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 685
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR +E+ FY+PH++DFRGRAYP+ +L+H+ +D+CRG+LEF+ G+ LG GL+WLK+H
Sbjct: 686 ARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCRGLLEFSTGKPLGPKGLNWLKVH 744
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LANL+ G+ K R AF ++++ ++FDSAD+PL+G +WW KA+DPFQ LA C + E
Sbjct: 745 LANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDGNKWWSKADDPFQALAACFEIAE 802
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
A+RS E++ISHIP+ QDG+CNGLQHYAALG D GA VNL + P+DVY +A V
Sbjct: 803 AVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQVNLWPSDHPSDVYEAVAEIV 862
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+++DA+ D + A L +V R +VK TVMT+VYGVTY+GAR QI +L+
Sbjct: 863 RGFLKKDAEAG-----DEM-ANFLKDKVTRSVVKPTVMTNVYGVTYVGARKQISEKLENI 916
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA-------------S 879
ME+ ++ + Y K AL +F A I WL C +I
Sbjct: 917 DG-MEKLKVADYANYLTKKVFEALRSLFTQAHEIQDWLSACCNLITHSLPADYIKEGIKD 975
Query: 880 ENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE--TEKVMVKRQRTAFPPNFVH 937
E PV WTT L LP+VQPYR ++T+LQ + ++ T V +Q TAFPPNF+H
Sbjct: 976 ELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQTVFIEERDRTATVQPHKQATAFPPNFIH 1035
Query: 938 SLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD 997
SLD +HM MT + C + + FA VHDSYWTHACDVD+MN +LRE FV L+ I E L
Sbjct: 1036 SLDATHMFMTCLKCSEQNINFAAVHDSYWTHACDVDQMNSLLREAFVLLHSNNIMERLKQ 1095
Query: 998 SFQKSFPK-LVFPPLPERGDFDLREVLGS 1025
F++ + LV + D DL+ G+
Sbjct: 1096 EFEERYKGFLVSKKAIKANDEDLKAKFGN 1124
Score = 94 (38.1 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 993 ENLLDSF-QKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
E+L F KS+ L FPPLP RG DL++VL S YFF+
Sbjct: 1116 EDLKAKFGNKSYIPLEFPPLPARGALDLKKVLESKYFFS 1154
>CGD|CAL0005126 [details] [associations]
symbol:RPO41 species:5476 "Candida albicans" [GO:0042645
"mitochondrial nucleoid" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IEA] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IEA] [GO:0000002 "mitochondrial
genome maintenance" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0005126 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0003899
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
RefSeq:XP_718901.1 RefSeq:XP_719003.1 STRING:Q5ABC9 GeneID:3639378
GeneID:3639479 KEGG:cal:CaO19.13462 KEGG:cal:CaO19.6041
Uniprot:Q5ABC9
Length = 1300
Score = 1138 (405.7 bits), Expect = 2.6e-131, Sum P(4) = 2.6e-131
Identities = 266/687 (38%), Positives = 381/687 (55%)
Query: 358 QKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFT 417
QKL R + KG + W RA++G ++ +L A + + D PAF
Sbjct: 533 QKLMR-RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIEDFHPAFY 591
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY-MPMLVPPVKWTGYDKGAH 476
H ++ ++ G K + I N +L G T + P +PMLV P W + G
Sbjct: 592 HGMQFIAGNRVGVIKVHTDIS-N--ILSGTSLT--ESIQPQALPMLVEPKPWNSFYGGGS 646
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
+ + ++R + + +K ++ L VFE L+ LGNT W VN +V +V+ W+
Sbjct: 647 LYSKTPLVRVKDSPETEAYLKAANERGNLTGVFEGLNVLGNTAWTVNKKVFNVISHYWNS 706
Query: 536 GGRLADLVDRNDVP-LPEK-PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVA 593
G + ++ P LP+ P D +L E SQRCD +L +A
Sbjct: 707 GEEFLSIPPVSEEPQLPQDIPGNSDPQKLLHHTTSKYQALDEYISNKSQRCDNNYRLEIA 766
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHL 653
R E+ ++PHN+DFRGRAYP+ P+ NHLG DL R + F +G+ LG+ GL+WLKI L
Sbjct: 767 RAFIGEK-LFFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWDGKELGEEGLNWLKIQL 825
Query: 654 ANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA 713
AN+Y GVDK S R+ F +L+ + +SA P WW KAE P+Q L+VC L EA
Sbjct: 826 ANVY--GVDKESLAKRVEFVNENLEKVLESAADPFATDAWWQKAEKPWQALSVCFELAEA 883
Query: 714 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL 773
+ P F+SH+PVHQDG+CNGLQHYAALG D GA VNL +KP DVY+ +A V
Sbjct: 884 YKLDDPTKFVSHLPVHQDGTCNGLQHYAALGGDVEGANQVNLNPSDKPQDVYTYVAKLVE 943
Query: 774 VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
++ DA++ D L A L ++ RK+VKQTVMT+VYGVT+IGA +QI++++
Sbjct: 944 TRVKADAEKG-----DEL-AIFLQDKIKRKVVKQTVMTNVYGVTFIGAIEQIRKQIIHL- 996
Query: 834 APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS-------ENQ---- 882
P ++A+ A+ Y A ++ E+F+ A I +WL E AK I E+Q
Sbjct: 997 FP-KDADHHAAARYLAVQVFASIRELFENAHFIQAWLTESAKRITKSVTLDFGESQYSEQ 1055
Query: 883 ----PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL--QRETEKVMVKRQRTAFPPNFV 936
V WTTPLGLP VQPYR + +KT++Q L + T V ++Q+ FPPNF+
Sbjct: 1056 ELLSTVIWTTPLGLPCVQPYRLHKKKQLKTAVQDLNIVMPSNTSAVDSRKQQNGFPPNFI 1115
Query: 937 HSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLL 996
HSLD +HM+MTA C + L FA VHDS+WTHA DV +MNRI+RE+FV+L+ + E L
Sbjct: 1116 HSLDATHMLMTATKCAEFDLNFASVHDSFWTHAADVPQMNRIIREQFVKLHTTNLIELLK 1175
Query: 997 DSFQKSFPKLVFPPLPERGDFDL-REV 1022
+ F + + K + LP + +L R+V
Sbjct: 1176 EEFSERY-KDNYQVLPIPNNHELARKV 1201
Score = 85 (35.0 bits), Expect = 2.6e-131, Sum P(4) = 2.6e-131
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 255 AKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313
AK + YAP+ ++ D +IT+ +L L TGG R +A +G AIE E RI
Sbjct: 454 AKDRAMYAPFILKISPDKAIIITILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRI 512
Score = 71 (30.1 bits), Expect = 2.6e-131, Sum P(4) = 2.6e-131
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 997 DSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+SFQ P + FP +P +G+FD+ V S YFF+
Sbjct: 1268 NSFQILVP-IQFPEVPSKGEFDVNLVKKSQYFFS 1300
Score = 40 (19.1 bits), Expect = 2.6e-131, Sum P(4) = 2.6e-131
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 189 YRM-LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFE 239
YR L + K + + EK Y + Q AP + Y+K++ + E
Sbjct: 78 YRSYLNLNPEKYDLDEEEKIVKYYSSKNDGVEVQPYAPEIQYLKNILESFSE 129
>ZFIN|ZDB-GENE-050208-458 [details] [associations]
symbol:si:dkey-21e2.1 "si:dkey-21e2.1" species:7955
"Danio rerio" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 ZFIN:ZDB-GENE-050208-458 GO:GO:0003677
GO:GO:0006351 PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 GeneTree:ENSGT00390000008060
EMBL:BX284682 EMBL:BX927243 IPI:IPI00610004
Ensembl:ENSDART00000088169 Uniprot:F1Q5F7
Length = 1281
Score = 1256 (447.2 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
Identities = 286/691 (41%), Positives = 400/691 (57%)
Query: 372 DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGS 431
D PW ++GS +++L+ IQS A + P H T +
Sbjct: 608 DDTPWPMILMVQLGSFLVDLMVHELKIQSNILNPA-LEKKLIPILYHMY------TFRSN 660
Query: 432 KKYGVIECNPLVLKGL-ERTARHMVIP-Y-MPMLVPPVKWTGYDKGAHFFLPSYVMR-TH 487
K G I+ +P++ + L E T + Y MPML PPV WT GA+ P+ +MR +
Sbjct: 661 HKIGFIKPHPILTRILREATETKLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLMRASD 720
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q + +++T ++ L V ++L+ +G+ W++N +L ++ I++ G +L+
Sbjct: 721 GAMQHQLLLEKTQEEDLHAVLDSLNQVGSCPWKINKPLLDIIISIFNDKGSDKLSIPPPL 780
Query: 546 NDVP-LPE-KPETEDEAQLRKWQWKVRNVKKEN--RERHSQRCDIELKLSVARKMKDEEG 601
++ P +P P Q+ K K +K + E HS R D KLS+A ++D+
Sbjct: 781 SEAPEIPRFNPHDPSYTQVEKAFMKREGIKAKKVVAEMHSLRMDALYKLSIANHVRDKI- 839
Query: 602 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGV 661
F++PHN+DFRGR YP+ PY NHLGSD+ R +L FAEGR LG GL WLKIHL NL G+
Sbjct: 840 FWFPHNMDFRGRTYPLPPYFNHLGSDVTRALLLFAEGRPLGPKGLDWLKIHLVNLT--GL 897
Query: 662 DKLSH-EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
K S +GRL + E+ ++DI DSAD PL+GR+WW+ A++P+Q LA C+ + A RS
Sbjct: 898 KKQSSLDGRLEYAESIMEDILDSADHPLDGRKWWMNADEPWQALACCMEIANASRSPDHH 957
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
FIS+ PVHQDGSCNGLQHYAALGRD +GA +VNL+ P DVYSG+A +V RDA
Sbjct: 958 KFISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCALPQDVYSGVAKQVEEFRVRDA 1017
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
+R + A++L + RK+VKQTVMT VYGVT G R QI++RLKE +
Sbjct: 1018 ERGLKI------AQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEID-DFPKDY 1070
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y +L EMF R I WL E A++IA + V W TPLGLP++QPY +
Sbjct: 1071 VWDASHYLVVQVFNSLKEMFTGTREIQEWLTESARLIAKSGRTVEWVTPLGLPIIQPYHR 1130
Query: 901 LGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ +K ++Q L + EK +Q+ AFPPNF+HSLD +HMM+T++ C +AGLT
Sbjct: 1131 IRNQILKGNIQNLNIHISHDANEKPDSMKQKNAFPPNFIHSLDSTHMMLTSLHCHRAGLT 1190
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL----LDSFQKSFP------KL- 1006
F VHD YWTHA VD MNR+ RE+FV L+ PI E L L + + P KL
Sbjct: 1191 FVSVHDCYWTHAVTVDIMNRVCREQFVALHSQPILEELSWFLLQKYSRRPPVGSKPKKLL 1250
Query: 1007 -------VFPPLPERGDFDLREVLGSPYFFN 1030
V +P+ GDFDL +V S YFF+
Sbjct: 1251 EYYTLMKVLSSVPQTGDFDLEKVKDSVYFFS 1281
Score = 40 (19.1 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 401 PADQLADAPPDIFPAFTHALRTVSK 425
P+ Q + + PA THA R ++K
Sbjct: 135 PSAQKKNVTEGVTPANTHASRWMAK 159
>UNIPROTKB|F1PCF7 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 EMBL:AAEX03012675 EMBL:AAEX03012674
Ensembl:ENSCAFT00000031345 Uniprot:F1PCF7
Length = 1221
Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
Identities = 287/690 (41%), Positives = 393/690 (56%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G R+ ELL +T I P A + P H S +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI--PGSLAAPQGACTLIPVLYHVYSFRS------FR 603
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HG 488
+ G+++ +P + L A H +I +PML PP+ WT GA P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + + P +L +AL LGN WRVN RVL ++ +++ G RL +
Sbjct: 664 TMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPS 723
Query: 547 DVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
+ P P + P AQ + + ++ K RE HS R D +LS+A+ ++ F+
Sbjct: 724 EAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FW 782
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL NL G+ K
Sbjct: 783 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKK 840
Query: 664 LSHE---GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
HE RL F + +DDI DSAD+P+ GR+WW++ ++P+Q LA C+ + A+RS P
Sbjct: 841 --HEPLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPT 898
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
F+SH PVHQDGSCNGLQHYAALGRD++GAA+VNL+ + P DVYSG+AA+V V ++DA
Sbjct: 899 AFVSHFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDA 958
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
QR V A++L + RK+VKQTVMT VYGVT G R QI+RRL+E +E
Sbjct: 959 QRGVRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF- 1011
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF R I WL E A++IA V W TPLG+P++QPY +
Sbjct: 1012 VWEASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHR 1071
Query: 901 LGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ + +Q LT T+K +Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1072 DSKVMIGGGIQSLTFSNSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1131
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL----LDSFQKSFPKLVFPP--- 1010
F VHD +WTHA DV MN++ RE+FV L+ PI NL ++ F S L P
Sbjct: 1132 FVSVHDCFWTHAADVAVMNQVCREQFVHLHSQPILHNLSRFLVERFCCSSRSLKHPKDSW 1191
Query: 1011 ----------LPERGDFDLREVLGSPYFFN 1030
+PE G FDL +V S YFF+
Sbjct: 1192 ISKLQDTLKAVPETGAFDLEQVKHSTYFFS 1221
>UNIPROTKB|K7EKS3 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 EMBL:CH471242 EMBL:AC004449 HGNC:HGNC:9200
Gene3D:1.10.287.260 PANTHER:PTHR10102 Ensembl:ENST00000588649
Uniprot:K7EKS3
Length = 1245
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 280/685 (40%), Positives = 401/685 (58%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 580 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 630
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 631 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 690
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 691 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 750
Query: 546 NDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
++ P P + P + A+ + + ++ + +K RE HS R + +LS+A+ ++D F
Sbjct: 751 SEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-F 809
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G+
Sbjct: 810 WLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLK 867
Query: 663 KLSH-EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
K RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 868 KREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAA 927
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++DAQ
Sbjct: 928 YVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQ 987
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL 841
R V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E +
Sbjct: 988 RGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-V 1040
Query: 842 FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKL 901
+ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 1041 WEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLD 1100
Query: 902 GR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1101 SKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1160
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF---PKLVFPP---- 1010
F VHD YWTHA DV MN++ RE+FV L+ PI ++L K F P+ +
Sbjct: 1161 FVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLK 1220
Query: 1011 -----LPERGDFDLREVLGSPYFFN 1030
+P+ G FDL +V S YFF+
Sbjct: 1221 ETLQAVPKPGAFDLEQVKRSTYFFS 1245
>UNIPROTKB|O00411 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase, mitochondrial"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IDA;TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA;TAS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005759 "mitochondrial matrix" evidence=TAS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
Reactome:REACT_71 InterPro:IPR002092 InterPro:IPR024075
Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900 GO:GO:0003677
GO:GO:0042645 Reactome:REACT_1788 GO:GO:0003899 EMBL:AC004449
EMBL:U75370 IPI:IPI00298738 RefSeq:NP_005026.3 UniGene:Hs.254113
PDB:3SPA PDBsum:3SPA ProteinModelPortal:O00411 SMR:O00411
DIP:DIP-56412N IntAct:O00411 MINT:MINT-1142772 STRING:O00411
PhosphoSite:O00411 PaxDb:O00411 PRIDE:O00411
Ensembl:ENST00000215591 GeneID:5442 KEGG:hsa:5442 UCSC:uc002lpf.1
CTD:5442 GeneCards:GC19M000617 H-InvDB:HIX0027511
H-InvDB:HIX0059707 HGNC:HGNC:9200 HPA:HPA006366 MIM:601778
neXtProt:NX_O00411 PharmGKB:PA33522 eggNOG:COG5108
HOGENOM:HOG000044061 HOVERGEN:HBG078730 InParanoid:O00411 KO:K10908
OMA:WARKGSF PhylomeDB:O00411 GenomeRNAi:5442 NextBio:21059
Bgee:O00411 CleanEx:HS_POLRMT Genevestigator:O00411
GermOnline:ENSG00000099821 GO:GO:0006391 Gene3D:1.10.287.260
PANTHER:PTHR10102 Uniprot:O00411
Length = 1230
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 280/685 (40%), Positives = 401/685 (58%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
++ P P + P + A+ + + ++ + +K RE HS R + +LS+A+ ++D F
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-F 794
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G+
Sbjct: 795 WLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLK 852
Query: 663 KLSH-EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
K RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 853 KREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAA 912
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++DAQ
Sbjct: 913 YVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQ 972
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL 841
R V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E +
Sbjct: 973 RGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-V 1025
Query: 842 FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKL 901
+ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 1026 WEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLD 1085
Query: 902 GR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1086 SKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1145
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF---PKLVFPP---- 1010
F VHD YWTHA DV MN++ RE+FV L+ PI ++L K F P+ +
Sbjct: 1146 FVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLK 1205
Query: 1011 -----LPERGDFDLREVLGSPYFFN 1030
+P+ G FDL +V S YFF+
Sbjct: 1206 ETLQAVPKPGAFDLEQVKRSTYFFS 1230
>UNIPROTKB|J9P8Y8 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR006019
InterPro:IPR006020 InterPro:IPR024075 Pfam:PF00640 Pfam:PF00940
PRINTS:PR00629 PROSITE:PS00489 PROSITE:PS00900 PROSITE:PS01179
SMART:SM00462 InterPro:IPR002885 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AAEX03012675
EMBL:AAEX03012674 Ensembl:ENSCAFT00000046349 Uniprot:J9P8Y8
Length = 1414
Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
Identities = 272/638 (42%), Positives = 373/638 (58%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G R+ ELL +T I P A + P H S +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI--PGSLAAPQGACTLIPVLYHVYSFRS------FR 603
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HG 488
+ G+++ +P + L A H +I +PML PP+ WT GA P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + + P +L +AL LGN WRVN RVL ++ +++ G RL +
Sbjct: 664 TMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPS 723
Query: 547 DVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
+ P P + P AQ + + ++ K RE HS R D +LS+A+ ++ F+
Sbjct: 724 EAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FW 782
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL NL G+ K
Sbjct: 783 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKK 840
Query: 664 LSHE---GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
HE RL F + +DDI DSAD+P+ GR+WW++ ++P+Q LA C+ + A+RS P
Sbjct: 841 --HEPLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPT 898
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
F+SH PVHQDGSCNGLQHYAALGRD++GAA+VNL+ + P DVYSG+AA+V V ++DA
Sbjct: 899 AFVSHFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDA 958
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
QR V A++L + RK+VKQTVMT VYGVT G R QI+RRL+E +E
Sbjct: 959 QRGVRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF- 1011
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF R I WL E A++IA V W TPLG+P++QPY +
Sbjct: 1012 VWEASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHR 1071
Query: 901 LGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ + +Q LT T+K +Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1072 DSKVMIGGGIQSLTFSNSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1131
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
F VHD +WTHA DV MN++ RE+FV L+ PI NL
Sbjct: 1132 FVSVHDCFWTHAADVAVMNQVCREQFVHLHSQPILHNL 1169
>RGD|1304599 [details] [associations]
symbol:Polrmt "polymerase (RNA) mitochondrial (DNA directed)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0042645 "mitochondrial nucleoid" evidence=ISO]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 RGD:1304599 GO:GO:0003677 GO:GO:0006351
GO:GO:0042645 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 OrthoDB:EOG4CZBF9 IPI:IPI00366179
Ensembl:ENSRNOT00000039232 UCSC:RGD:1304599 Uniprot:D3ZYB6
Length = 1205
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 286/693 (41%), Positives = 397/693 (57%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A + P H S +
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSFRSY------R 585
Query: 433 KYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMR-TH 487
+ G+++ +P LE TA + + +PML PP+ WT GA+ + +MR T
Sbjct: 586 QVGILKPHPAFTHLLE-TAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATE 644
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
G Q + ++R P QL +AL LGN WRVN R+L ++ +I+ G RL R
Sbjct: 645 GTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRLGVPPPR 704
Query: 546 NDVPLPEKPETED------EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P P K + +++LRK ++ K RE HS R + +LS+A+ ++D
Sbjct: 705 SEAPRPAKHQLPPGSTPVHKSELRK---ELARCLKAAREMHSLRSEALYRLSLAQHLRDR 761
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 762 V-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TG 819
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ S RLAF + + +I DSAD PL G++WW+KA++P+Q LA C+ + +A+RS P
Sbjct: 820 LRKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDP 879
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V + Q+D
Sbjct: 880 TAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELRQQD 939
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
A+ V A+ L V RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 940 AKEGLQV------AQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 993
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY
Sbjct: 994 -VWEASHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPIIQPYH 1052
Query: 900 KLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
+ + VK LQ +T +++K +Q+ FPPNF+HSLD SHMM+TA+ C + GL
Sbjct: 1053 RESKIQVKGGLQSITFTSSVDDSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGL 1112
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF----------P-- 1004
TF VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F P
Sbjct: 1113 TFVSVHDCFWTHAADIPMMNEVCREQFVRLHSEPILEDLAKFLEKRFCSVSNTRSLKPSE 1172
Query: 1005 -----KL--VFPPLPERGDFDLREVLGSPYFFN 1030
KL LPE G FDL +V+ S YFF+
Sbjct: 1173 LALITKLQETLRSLPETGTFDLGQVIRSTYFFS 1205
>MGI|MGI:1915843 [details] [associations]
symbol:Polrmt "polymerase (RNA) mitochondrial (DNA
directed)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=ISO]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 MGI:MGI:1915843 GO:GO:0005739
GO:GO:0003677 GO:GO:0006351 GO:GO:0042645 PROSITE:PS51375
TIGRFAMs:TIGR00756 GO:GO:0003899 CTD:5442 eggNOG:COG5108
HOGENOM:HOG000044061 HOVERGEN:HBG078730 KO:K10908 OMA:WARKGSF
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AK053356 EMBL:AK085666
IPI:IPI00308717 RefSeq:NP_766139.2 UniGene:Mm.39001
ProteinModelPortal:Q8BKF1 SMR:Q8BKF1 STRING:Q8BKF1
PhosphoSite:Q8BKF1 PaxDb:Q8BKF1 PRIDE:Q8BKF1
Ensembl:ENSMUST00000020580 GeneID:216151 KEGG:mmu:216151
GeneTree:ENSGT00390000008060 InParanoid:Q8BKF1 OrthoDB:EOG4CZBF9
NextBio:375012 Bgee:Q8BKF1 CleanEx:MM_POLRMT Genevestigator:Q8BKF1
GermOnline:ENSMUSG00000020329 Uniprot:Q8BKF1
Length = 1207
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 280/692 (40%), Positives = 392/692 (56%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A P H S +
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARQGAQRSIPVLYHVYSFRSY------R 587
Query: 433 KYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMR-TH 487
+ G+++ +P LE TA + + +PML PP+ WT GA+ + +MR T
Sbjct: 588 QVGILKPHPAFTHLLE-TAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATE 646
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD--R 545
G Q + +++ P QL +AL LGN WRVN +L ++ +I+ G + V R
Sbjct: 647 GTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPR 706
Query: 546 NDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
++ P P + P + + ++ K RE HS R + +LS+A+ ++ F
Sbjct: 707 SEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLRHRV-F 765
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G+
Sbjct: 766 WLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLT--GLK 823
Query: 663 KL-SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
K S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+ + A+RS P
Sbjct: 824 KGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAA 883
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
+ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V Q+DA+
Sbjct: 884 YISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDAK 943
Query: 782 RDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
+ LR A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 944 -------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF- 995
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY +
Sbjct: 996 VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYHR 1055
Query: 901 LGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ VK LQ +TL E++K +Q+ FPPNF+HSLD SHMM+TA+ C + GL
Sbjct: 1056 ESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLI 1115
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF-------------- 1003
F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F
Sbjct: 1116 FVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSER 1175
Query: 1004 ---PKL--VFPPLPERGDFDLREVLGSPYFFN 1030
KL LP+ G FDL +V+ S YFF+
Sbjct: 1176 ALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207
>UNIPROTKB|E1BZ13 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351 GO:GO:0042645
PROSITE:PS51375 GO:GO:0003899 OMA:WARKGSF Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AADN02066671
EMBL:AADN02066672 EMBL:AADN02066673 IPI:IPI00572283
Ensembl:ENSGALT00000002098 Uniprot:E1BZ13
Length = 1018
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 282/689 (40%), Positives = 397/689 (57%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADA-PPDIFPAFTHALRTVSKETKGGSKKY 434
W ++G ++E+L ++ P + L P + P H S S +
Sbjct: 351 WPYVLLMRLGMYLLEILVHA--VKVPRNTLNPRLPSKLIPVLYHIYSFRS------SWQV 402
Query: 435 GVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAK 490
G+I+ +P+ + + A M+ +PML PPV WT GA + +MR GA
Sbjct: 403 GLIKPHPIFSQIVSDAAETMLTFNSSAIPMLCPPVPWTSPHFGAFVLSDTKLMRYVDGAI 462
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC-GGRLADLVDR-NDV 548
Q + + + P+ L PV +AL+ LGN W++N VL ++ I++ G D+ ++
Sbjct: 463 QHQQLLDQCPQVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGNEKLDIPPPVSEA 522
Query: 549 PLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
P P + A + + ++ KK+ E HS R D KLS+A ++D+ F++PHN+
Sbjct: 523 PKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDKV-FWFPHNM 581
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGR YP PY NHLG+D+ R IL FAEGR LG GL WLKIHL NL G K + +
Sbjct: 582 DFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TGLKKKNALQE 640
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
RL + +++I DSAD PL GR+WW+ ++P+Q LA C+ + +A RS P FISH PV
Sbjct: 641 RLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDPAAFISHFPV 700
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
HQDGSCNGLQHYAALGRD +GA +VNL+ P DVYS +A +V ++DA+
Sbjct: 701 HQDGSCNGLQHYAALGRDLIGAISVNLMPCNVPQDVYSAVAQQVEEFRKKDAE------- 753
Query: 789 DALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCY 847
+ LR A++L + RK+VKQTVMT VYGVT G R Q+++RLKE P E L+ AS Y
Sbjct: 754 EGLRIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQMEKRLKEIEFP--EEYLWEASHY 811
Query: 848 AAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVK 907
K + EMF A R I +WL E AK+IA + V W TPLGLP+VQPY ++ R TV
Sbjct: 812 LVKQVFNGIKEMFSATRDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYYRI-RPTVP 870
Query: 908 ------------TSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ L+ L+ Q T+ VK Q+ AFPPNF+HSLD +HMM+TA+ C + G
Sbjct: 871 HIGHVGMEQAGASHLRELSSQPLTKPDTVK-QKNAFPPNFIHSLDSTHMMLTALHCFRQG 929
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL----LDSF----QKS---FP 1004
LTF VHD YWTHA VD MN I R++FV L+ I E+L L+++ ++S +
Sbjct: 930 LTFVSVHDCYWTHALTVDIMNEICRQQFVALHSQKILEDLSKFMLENYCSPDRESRALWQ 989
Query: 1005 KLVFPPL---PERGDFDLREVLGSPYFFN 1030
K + L P+ G+F+L +V+ S YFF+
Sbjct: 990 KKLMEQLSNVPKTGEFNLNKVIDSTYFFS 1018
>UNIPROTKB|E1BCZ0 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351 GO:GO:0042645
PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899 OMA:WARKGSF
Gene3D:1.10.287.260 PANTHER:PTHR10102 GeneTree:ENSGT00390000008060
EMBL:DAAA02020222 IPI:IPI00698218 Ensembl:ENSBTAT00000020034
Uniprot:E1BCZ0
Length = 1221
Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
Identities = 274/695 (39%), Positives = 391/695 (56%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLAD-APPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ E+L + +Q P+ A P + P H S +
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSFRS------FR 600
Query: 433 KYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
+ G+++ +P + L+ TA + + +PML PP+ WT GA P+ +MR+
Sbjct: 601 QIGILKPHPAFTQ-LQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLE 659
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLS-VLDRIWSCG-GRLADLVDR 545
G +Q + ++R P +L +AL LGN WRVN RVL VLD G RL
Sbjct: 660 GTQQHQLLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPP 719
Query: 546 NDVPLPEK----------PETE--DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVA 593
+ P P + PE D+A++R+ ++ K RE S R D +LS+A
Sbjct: 720 TEAPRPPEGRQTPKGCLLPEASPADKAEMRR---ELARRLKVAREMQSLRADALYRLSLA 776
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHL 653
+ +++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL
Sbjct: 777 QHLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHL 835
Query: 654 ANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA 713
NL G + S + R + + ++DI DSA++P+ GR+WW++A++P+Q LA C+ + +
Sbjct: 836 INL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQV 894
Query: 714 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL 773
+ S P T+ISH PVHQDGSCNGLQHYAALGRD+ GA +VNL + P DVYS +AA+V
Sbjct: 895 VHSPDPTTYISHFPVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQVE 954
Query: 774 VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-R 832
V ++DA++ V A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 955 VFRRQDAKQGVRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELE 1008
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
P E ++ AS Y + +L EMF R I WL E A++I+ V W TPLG+
Sbjct: 1009 DFPQEF--VWEASHYLVRQVFNSLQEMFSGTRSIQRWLTESARLISLTGSAVEWITPLGV 1066
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETE---KVMVKRQRTAFPPNFVHSLDGSHMMMTAV 949
P++QPY + + +K LQ LT + K +Q+ FPPNF+HSLD +HMM+TA+
Sbjct: 1067 PIIQPYHRDSKVMIKGGLQSLTFSSSVDTNQKPNTLKQKNGFPPNFIHSLDSTHMMLTAL 1126
Query: 950 ACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----- 1004
C + GLTF VHD +WTHA DV MN++ RE+FV L+ PI +L K F
Sbjct: 1127 YCYRKGLTFVSVHDCFWTHAADVGVMNQVCREQFVRLHSQPILHDLSRFLIKRFCSDSRT 1186
Query: 1005 ---------KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P G FDL +V S +FF+
Sbjct: 1187 SKSMWVSRLKDTLLSVPPTGTFDLDQVKRSTFFFS 1221
>FB|FBgn0261938 [details] [associations]
symbol:mtRNApol "mitochondrial RNA polymerase" species:7227
"Drosophila melanogaster" [GO:0005739 "mitochondrion" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 EMBL:AE014134 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899 KO:K10908
OMA:WARKGSF Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 HSSP:P00573 FlyBase:FBgn0261938
EMBL:BT011381 RefSeq:NP_608565.1 UniGene:Dm.12209 SMR:Q9VPW4
STRING:Q9VPW4 EnsemblMetazoa:FBtr0077989 EnsemblMetazoa:FBtr0332273
GeneID:33285 KEGG:dme:Dmel_CG4644 CTD:33285 InParanoid:Q9VPW4
GenomeRNAi:33285 NextBio:782857 Uniprot:Q9VPW4
Length = 1369
Score = 1099 (391.9 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 255/654 (38%), Positives = 370/654 (56%)
Query: 375 PWGQDARAKVGSRVIELLTQT----AYI--QSPADQLADAPPDIFPAFTHALRTVSKETK 428
PW + VG + +L + A+I Q + A P ++ PAF R + K
Sbjct: 686 PWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVK 745
Query: 429 GGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVM 484
K + P VL L R +R + + +PML PP W+ G + + ++
Sbjct: 746 EEVKPH------P-VLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKTELI 798
Query: 485 RT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLA-DL 542
R H A QQ D + + + L P ++L+ L + WRVN ++L V+ +++ GG + D+
Sbjct: 799 RLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDVKLDV 858
Query: 543 VDRNDV--PLPEKPE-------TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVA 593
PLP P T E + ++++ K+ + +K+ E +S CD +LS+A
Sbjct: 859 PQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQ-AEMYSLWCDALYRLSLA 917
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHL 653
+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F + + LG GL WLK+H
Sbjct: 918 QHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGLSWLKLHC 976
Query: 654 ANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA 713
NL G + S RL + E + DI DSAD PL GR WW K+++P+Q LA C+ +
Sbjct: 977 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANV 1035
Query: 714 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL 773
R P ++S P+HQDGSCNGLQHYAALGRD GA +VNL P DVYS +AA V
Sbjct: 1036 HRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVE 1095
Query: 774 VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
+ DAQ V A+ L V RK++KQTVMT+VYGVT GAR QI R+LK+
Sbjct: 1096 KSRKADAQNGLHV------AEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDID 1149
Query: 834 APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGL 892
+ ++ AS Y T +L EMF + R I W ECA++I+ +Q V W TPLGL
Sbjct: 1150 -DFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLGL 1208
Query: 893 PVVQPY-RKLGRHTVKTSLQI-LTLQRET-EKVMVKRQRTAFPPNFVHSLDGSHMMMTAV 949
PVVQPY R+ +H+ ++ ++ + + E+ + +Q+ AFPPNF+HSLD SHMM+T++
Sbjct: 1209 PVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNILKQKNAFPPNFIHSLDSSHMMLTSL 1268
Query: 950 ACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
C + G+TF VHD +WTHA V E+NR+ RE+FV L+ PI E L + + ++
Sbjct: 1269 HCERQGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQLSEFMRHTY 1322
Score = 76 (31.8 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 1007 VFPPLPERGDFDLREVLGSPYFFN 1030
+ +P++GDFDLR VL S YFF+
Sbjct: 1346 ILKQMPQKGDFDLRNVLDSVYFFS 1369
>WB|WBGene00013680 [details] [associations]
symbol:Y105E8A.23 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0007413 "axonal fasciculation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
GO:GO:0006898 GO:GO:0040010 GO:GO:0003677 GO:GO:0000003
GO:GO:0006351 GO:GO:0007413 GO:GO:0003899 EMBL:AL132876
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 RefSeq:NP_001122532.1 UniGene:Cel.5359
ProteinModelPortal:A5PEY3 PaxDb:A5PEY3 EnsemblMetazoa:Y105E8A.23b
GeneID:173317 KEGG:cel:CELE_Y105E8A.23 UCSC:Y105E8A.23a CTD:173317
WormBase:Y105E8A.23b HOGENOM:HOG000285932 InParanoid:A5PEY3
OMA:FWTHANS NextBio:879131 ArrayExpress:A5PEY3 Uniprot:A5PEY3
Length = 1156
Score = 894 (319.8 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 206/512 (40%), Positives = 287/512 (56%)
Query: 553 KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRG 612
K E D + R + K K E +S C ++ ++ +A + + ++PHN+DFRG
Sbjct: 657 KKEDVDVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQT-LFFPHNMDFRG 715
Query: 613 RAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAF 672
R YP+ PYL+H+G D+ R IL+FA+ + LG+ G WLK+H NL G + + S R+
Sbjct: 716 RVYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVE 774
Query: 673 TENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQD 731
E + + DSA PL G++WW+ +++P+Q LA C+ + A R S F S +P+HQD
Sbjct: 775 AERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQD 834
Query: 732 GSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDAL 791
GSCNGLQHYAALGRD G VNL + P DVYS +A RV Q+D Q + A
Sbjct: 835 GSCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVAR 894
Query: 792 RAKLLLSQ-VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG------- 843
+ + L Q V RK++KQTVMT+VYGVT GA QIKR+LK P E+A +F
Sbjct: 895 KLREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMDIPGEDAAIFARYLARKT 954
Query: 844 -ASC--------YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
AS Y A+ T +L + F ++ + W AK + + V W TPLGLPV
Sbjct: 955 FASLNDAAIFARYLARKTFASLNDAFTSSMALKDWFRLIAKGSSDLMKTVEWITPLGLPV 1014
Query: 895 VQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
VQPY KL K L + + +Q AFPPNFVHSLD +HMM+T++ C +
Sbjct: 1015 VQPYCKLVERKGKLILAPVPM----------KQVDAFPPNFVHSLDSTHMMLTSLNCAQR 1064
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF--PKL------ 1006
G+TFA VHD +WTHA VD+MN I R++FV L+ PI E + F+K++ PK+
Sbjct: 1065 GITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPE 1124
Query: 1007 --------VFPPLPERGDFDLREVLGSPYFFN 1030
+F E GD D+ +V S YFF+
Sbjct: 1125 KDFQKYSEIFTANIEHGDLDIEKVKDSVYFFS 1156
Score = 115 (45.5 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 39/150 (26%), Positives = 71/150 (47%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSY------VMRTHGAKQQRDTVKR-TPKKQLEPVFEAL 511
+PM+VPP W G + S +M + + R T + Q PVF+AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGGRLAD--LVDRNDVPLPEKPETEDEAQLRKWQWKV 569
+ LG+T W +N +L VL ++ G L+++ ++P+ + +T D + ++ +
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPM--RHDTFDIPDFGR-EFGI 654
Query: 570 RNVKKENRERHSQRCDIELKLSVARKMKDE 599
+KKE+ + R + K A KM++E
Sbjct: 655 -GIKKEDVDVEKFRSYAKKKAE-AIKMRNE 682
>GENEDB_PFALCIPARUM|PF11_0264 [details] [associations]
symbol:PF11_0264 "DNA-dependent RNA polymerase"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 EMBL:AE014186 GO:GO:0003899 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 RefSeq:XP_001347935.1
HSSP:P00573 ProteinModelPortal:Q8IIB0
EnsemblProtists:PF11_0264:mRNA GeneID:810811 KEGG:pfa:PF11_0264
EuPathDB:PlasmoDB:PF3D7_1125300 HOGENOM:HOG000282367
ProtClustDB:CLSZ2432452 Uniprot:Q8IIB0
Length = 1531
Score = 550 (198.7 bits), Expect = 3.3e-96, Sum P(4) = 3.3e-96
Identities = 114/350 (32%), Positives = 190/350 (54%)
Query: 434 YGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
YGVI L A H+ + Y+PM+ P +W ++ G S++ +
Sbjct: 889 YGVIHMRECCANYLLNNAINSHIPLNYLPMICKPKRWENFEGGMLLLKNSFI------RC 942
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
+ L + + +GN W++N +L ++ + G + + + LP
Sbjct: 943 NIKPLFNLNVCNLNRIKNIVSEIGNVGWKINKEILHYIEYAYIHGITIGKIPLYKNYTLP 1002
Query: 552 E--KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
+ + ++ +++K+ + + N+ S+R KL+VA+ KD + Y+PHN+D
Sbjct: 1003 KYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDIIYFPHNID 1062
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669
FRGR YP+ P+L+H+ D+CR ++ FAE + +G GL WLKIHLAN + G DKLS + R
Sbjct: 1063 FRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKDKLSFQKR 1120
Query: 670 LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
+ + + ++++I +P + +W AE P+Q LAV I+L AL S + + S IP+
Sbjct: 1121 IQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKYKSSIPIQ 1180
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
QDG+CNGLQHYAALG+D G AVN++ ++P D+YS + V+ I+ D
Sbjct: 1181 QDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKND 1230
Score = 472 (171.2 bits), Expect = 3.3e-96, Sum P(4) = 3.3e-96
Identities = 98/234 (41%), Positives = 139/234 (59%)
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAKVTLTALGEMF 860
RK+VKQT+MT YGVT IGA++Q+K +++ G +++ + S Y A ++ E+F
Sbjct: 1298 RKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIF 1357
Query: 861 QAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-ILTLQRET 919
+ A I W +K+ N P+ W +P+GLP QPYR R V T LQ I + +
Sbjct: 1358 KRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKN 1417
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR-KAGLTFAGVHDSYWTHACDVDEMNRI 978
++ +QR FPPNFVHSLD SH+MMTA + +FA VHDSYW HAC+VD MN+
Sbjct: 1418 SQLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQNNFSFAAVHDSYWAHACNVDIMNQF 1477
Query: 979 LREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
+RE F+ LY PI EN+ ++F+ K P PE+G+ D+ V S YFF+
Sbjct: 1478 IRESFITLYNEPILENIYNNFRIRLGKFATKIPSSPEQGELDISMVKDSLYFFS 1531
Score = 79 (32.9 bits), Expect = 3.3e-96, Sum P(4) = 3.3e-96
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
RQ+ IE +++KA E E + ++ + K + + ++L W L I +E+ +
Sbjct: 411 RQMLIERSSYKKAIEEAEEFVSNLHDLKKITEIQGLCKIYLNWISELEKRIILYKEKNKN 470
Query: 255 AKHKVAYAPYFDQLPADMMAVITM 278
K K + + D ++A IT+
Sbjct: 471 KKKKKIFPDFIDD---KLLATITV 491
Score = 38 (18.4 bits), Expect = 3.3e-96, Sum P(4) = 3.3e-96
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 367 VKGQDD-FKPWGQDARAKVGSRVIELLTQTA 396
+K DD W +A +G ++ +L + A
Sbjct: 669 IKHDDDNIIEWNSVKKATIGGLLLNMLIENA 699
>UNIPROTKB|Q8IIB0 [details] [associations]
symbol:PF11_0264 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005739
"mitochondrion" evidence=ISS] InterPro:IPR002092 InterPro:IPR024075
Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739
GO:GO:0003677 GO:GO:0006351 EMBL:AE014186 GO:GO:0003899 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 RefSeq:XP_001347935.1
HSSP:P00573 ProteinModelPortal:Q8IIB0
EnsemblProtists:PF11_0264:mRNA GeneID:810811 KEGG:pfa:PF11_0264
EuPathDB:PlasmoDB:PF3D7_1125300 HOGENOM:HOG000282367
ProtClustDB:CLSZ2432452 Uniprot:Q8IIB0
Length = 1531
Score = 550 (198.7 bits), Expect = 3.3e-96, Sum P(4) = 3.3e-96
Identities = 114/350 (32%), Positives = 190/350 (54%)
Query: 434 YGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
YGVI L A H+ + Y+PM+ P +W ++ G S++ +
Sbjct: 889 YGVIHMRECCANYLLNNAINSHIPLNYLPMICKPKRWENFEGGMLLLKNSFI------RC 942
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
+ L + + +GN W++N +L ++ + G + + + LP
Sbjct: 943 NIKPLFNLNVCNLNRIKNIVSEIGNVGWKINKEILHYIEYAYIHGITIGKIPLYKNYTLP 1002
Query: 552 E--KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
+ + ++ +++K+ + + N+ S+R KL+VA+ KD + Y+PHN+D
Sbjct: 1003 KYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDIIYFPHNID 1062
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669
FRGR YP+ P+L+H+ D+CR ++ FAE + +G GL WLKIHLAN + G DKLS + R
Sbjct: 1063 FRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKDKLSFQKR 1120
Query: 670 LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
+ + + ++++I +P + +W AE P+Q LAV I+L AL S + + S IP+
Sbjct: 1121 IQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKYKSSIPIQ 1180
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
QDG+CNGLQHYAALG+D G AVN++ ++P D+YS + V+ I+ D
Sbjct: 1181 QDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKND 1230
Score = 472 (171.2 bits), Expect = 3.3e-96, Sum P(4) = 3.3e-96
Identities = 98/234 (41%), Positives = 139/234 (59%)
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAKVTLTALGEMF 860
RK+VKQT+MT YGVT IGA++Q+K +++ G +++ + S Y A ++ E+F
Sbjct: 1298 RKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIF 1357
Query: 861 QAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-ILTLQRET 919
+ A I W +K+ N P+ W +P+GLP QPYR R V T LQ I + +
Sbjct: 1358 KRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKN 1417
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR-KAGLTFAGVHDSYWTHACDVDEMNRI 978
++ +QR FPPNFVHSLD SH+MMTA + +FA VHDSYW HAC+VD MN+
Sbjct: 1418 SQLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQNNFSFAAVHDSYWAHACNVDIMNQF 1477
Query: 979 LREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
+RE F+ LY PI EN+ ++F+ K P PE+G+ D+ V S YFF+
Sbjct: 1478 IRESFITLYNEPILENIYNNFRIRLGKFATKIPSSPEQGELDISMVKDSLYFFS 1531
Score = 79 (32.9 bits), Expect = 3.3e-96, Sum P(4) = 3.3e-96
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
RQ+ IE +++KA E E + ++ + K + + ++L W L I +E+ +
Sbjct: 411 RQMLIERSSYKKAIEEAEEFVSNLHDLKKITEIQGLCKIYLNWISELEKRIILYKEKNKN 470
Query: 255 AKHKVAYAPYFDQLPADMMAVITM 278
K K + + D ++A IT+
Sbjct: 471 KKKKKIFPDFIDD---KLLATITV 491
Score = 38 (18.4 bits), Expect = 3.3e-96, Sum P(4) = 3.3e-96
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 367 VKGQDD-FKPWGQDARAKVGSRVIELLTQTA 396
+K DD W +A +G ++ +L + A
Sbjct: 669 IKHDDDNIIEWNSVKKATIGGLLLNMLIENA 699
>CGD|CAL0002343 [details] [associations]
symbol:orf19.6499 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002092 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0002343 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000020 EMBL:AACQ01000016 GO:GO:0003899
eggNOG:COG5108 KO:K10908 PANTHER:PTHR10102 RefSeq:XP_720824.1
RefSeq:XP_721337.1 RefSeq:XP_888836.1 ProteinModelPortal:Q5AH39
GeneID:3636994 GeneID:3637444 GeneID:3703847 KEGG:cal:CaO19.13852
KEGG:cal:CaO19.6499 KEGG:cal:CaO19_6499 Uniprot:Q5AH39
Length = 1218
Score = 473 (171.6 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
Identities = 121/327 (37%), Positives = 168/327 (51%)
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEG--FYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
+K E S R E+ +A E G Y+ +++DFRGR YP P L H G DL R
Sbjct: 626 QKTKTELKSLRITFEIMNKLANAF-GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLAR 683
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
+ F LG +G +W+K LA+L+ + L F E + D+I DSA P+ G
Sbjct: 684 SLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCLEFYEENYDNIIDSARNPMTG 736
Query: 691 RRWWLKAEDPFQCLAVCINLTEAL--RSSSP--ETFISHIPVHQDGSCNGLQHYAALGRD 746
++WW+KA+ PF LAVC + + L R S E + +P+HQDGSCNGLQHYA L D
Sbjct: 737 KKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAAD 796
Query: 747 TLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVK 806
G AAVNL+ E DVY+ + V I++D + AK L ++RKLVK
Sbjct: 797 ETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDISEQNLGTVNLETAKFFLPILNRKLVK 856
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKE-----RGAPME-----------EAELFGASCYAAK 850
+ VMT+VYGVT GA QI + +KE R P + ++ + Y AK
Sbjct: 857 RPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAK 916
Query: 851 VTLTALGEMFQAARGIMSWLGECAKII 877
L ++ E+F A+ I WL + K I
Sbjct: 917 KILDSIDELFVHAKQIEKWLLQNTKRI 943
Score = 260 (96.6 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
Identities = 48/119 (40%), Positives = 73/119 (61%)
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQR--TAFPPNFVHSLD 940
P+ W +P GLPV+Q YRK+ ++ T + + R++ PNF+HSLD
Sbjct: 975 PMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLD 1034
Query: 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
+H+ MT + KAGLTF+ +HDSYWTH +V+++++ILRE+FVELY M + + F
Sbjct: 1035 AAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 1093
Score = 144 (55.7 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
Identities = 44/186 (23%), Positives = 88/186 (47%)
Query: 378 QDARAKVGSRVIELLTQTAYIQSP--ADQL---ADAPPDIFPAFTHALRTVSKETKGGSK 432
++ + + S+ +E L + +++ ADQ + D + AF + ++ TK +K
Sbjct: 449 ENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRITN-TK--NK 505
Query: 433 KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQ 492
Y +++ +P + L+ + Y+PML PP W G + + + + T+ + Q
Sbjct: 506 TYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQV 565
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW-SCGGRLADLVDRNDVPLP 551
+ + QL+ + LD +GNT W +N +L V +++ + G L+ D LP
Sbjct: 566 ELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPSVPDETLP 625
Query: 552 EKPETE 557
+K +TE
Sbjct: 626 QKTKTE 631
Score = 62 (26.9 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
+P +G+ D+ +VL SPYFF+
Sbjct: 1199 VPPKGNLDISKVLDSPYFFS 1218
Score = 57 (25.1 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 27/136 (19%), Positives = 57/136 (41%)
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM--VKR---------QRTAFPPNF 935
T LP++ RKL + V T++ +TL + ++M +K +T F
Sbjct: 842 TAKFFLPILN--RKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNET 899
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+H L + T+ +K + D + HA +++ ++ + Y + ++L
Sbjct: 900 LHKLKSVQLTQTSYLAKKI---LDSI-DELFVHAKQIEKWLLQNTKRILTSYNIKTIDHL 955
Query: 996 LDSFQKSFPKLVFPPL 1011
L++ SF + P+
Sbjct: 956 LNNNPSSFETIFTTPM 971
>UNIPROTKB|Q5AH39 [details] [associations]
symbol:CaO19.13852 "DNA-directed RNA polymerase"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002092 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0002343 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000020 EMBL:AACQ01000016 GO:GO:0003899
eggNOG:COG5108 KO:K10908 PANTHER:PTHR10102 RefSeq:XP_720824.1
RefSeq:XP_721337.1 RefSeq:XP_888836.1 ProteinModelPortal:Q5AH39
GeneID:3636994 GeneID:3637444 GeneID:3703847 KEGG:cal:CaO19.13852
KEGG:cal:CaO19.6499 KEGG:cal:CaO19_6499 Uniprot:Q5AH39
Length = 1218
Score = 473 (171.6 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
Identities = 121/327 (37%), Positives = 168/327 (51%)
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEG--FYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
+K E S R E+ +A E G Y+ +++DFRGR YP P L H G DL R
Sbjct: 626 QKTKTELKSLRITFEIMNKLANAF-GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLAR 683
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
+ F LG +G +W+K LA+L+ + L F E + D+I DSA P+ G
Sbjct: 684 SLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCLEFYEENYDNIIDSARNPMTG 736
Query: 691 RRWWLKAEDPFQCLAVCINLTEAL--RSSSP--ETFISHIPVHQDGSCNGLQHYAALGRD 746
++WW+KA+ PF LAVC + + L R S E + +P+HQDGSCNGLQHYA L D
Sbjct: 737 KKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAAD 796
Query: 747 TLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVK 806
G AAVNL+ E DVY+ + V I++D + AK L ++RKLVK
Sbjct: 797 ETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDISEQNLGTVNLETAKFFLPILNRKLVK 856
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKE-----RGAPME-----------EAELFGASCYAAK 850
+ VMT+VYGVT GA QI + +KE R P + ++ + Y AK
Sbjct: 857 RPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAK 916
Query: 851 VTLTALGEMFQAARGIMSWLGECAKII 877
L ++ E+F A+ I WL + K I
Sbjct: 917 KILDSIDELFVHAKQIEKWLLQNTKRI 943
Score = 260 (96.6 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
Identities = 48/119 (40%), Positives = 73/119 (61%)
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQR--TAFPPNFVHSLD 940
P+ W +P GLPV+Q YRK+ ++ T + + R++ PNF+HSLD
Sbjct: 975 PMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLD 1034
Query: 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
+H+ MT + KAGLTF+ +HDSYWTH +V+++++ILRE+FVELY M + + F
Sbjct: 1035 AAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 1093
Score = 144 (55.7 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
Identities = 44/186 (23%), Positives = 88/186 (47%)
Query: 378 QDARAKVGSRVIELLTQTAYIQSP--ADQL---ADAPPDIFPAFTHALRTVSKETKGGSK 432
++ + + S+ +E L + +++ ADQ + D + AF + ++ TK +K
Sbjct: 449 ENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRITN-TK--NK 505
Query: 433 KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQ 492
Y +++ +P + L+ + Y+PML PP W G + + + + T+ + Q
Sbjct: 506 TYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQV 565
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW-SCGGRLADLVDRNDVPLP 551
+ + QL+ + LD +GNT W +N +L V +++ + G L+ D LP
Sbjct: 566 ELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPSVPDETLP 625
Query: 552 EKPETE 557
+K +TE
Sbjct: 626 QKTKTE 631
Score = 62 (26.9 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
+P +G+ D+ +VL SPYFF+
Sbjct: 1199 VPPKGNLDISKVLDSPYFFS 1218
Score = 57 (25.1 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 27/136 (19%), Positives = 57/136 (41%)
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM--VKR---------QRTAFPPNF 935
T LP++ RKL + V T++ +TL + ++M +K +T F
Sbjct: 842 TAKFFLPILN--RKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNET 899
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+H L + T+ +K + D + HA +++ ++ + Y + ++L
Sbjct: 900 LHKLKSVQLTQTSYLAKKI---LDSI-DELFVHAKQIEKWLLQNTKRILTSYNIKTIDHL 955
Query: 996 LDSFQKSFPKLVFPPL 1011
L++ SF + P+
Sbjct: 956 LNNNPSSFETIFTTPM 971
>UNIPROTKB|K7ESD1 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase, mitochondrial"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002092 Pfam:PF00940 EMBL:AC004449 HGNC:HGNC:9200
PANTHER:PTHR10102 Ensembl:ENST00000590336 Uniprot:K7ESD1
Length = 143
Score = 252 (93.8 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 55/130 (42%), Positives = 74/130 (56%)
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-------ACRKAGLTFAGVHDSYWTHACD 971
+ K ++Q+ FPPNF+HSLD SHMM+TA+ C + GLTF VHD YWTHA D
Sbjct: 14 SRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVSVHDCYWTHAAD 73
Query: 972 VDEMNRILREKFVELYEMPIFENLLDSFQKSF---PKLVFPP---------LPERGDFDL 1019
V MN++ RE+FV L+ PI ++L K F P+ + +P+ G FDL
Sbjct: 74 VSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDL 133
Query: 1020 REVLGSPYFF 1029
+V S YFF
Sbjct: 134 EQVKRSTYFF 143
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1030 960 0.00095 122 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 631 (67 KB)
Total size of DFA: 479 KB (2223 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.66u 0.32s 73.98t Elapsed: 00:00:04
Total cpu time: 73.67u 0.32s 73.99t Elapsed: 00:00:04
Start: Fri May 10 04:30:08 2013 End: Fri May 10 04:30:12 2013