BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036741
(1030 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225451858|ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera]
gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 1588 bits (4113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/1044 (75%), Positives = 886/1044 (84%), Gaps = 23/1044 (2%)
Query: 1 MSNNKTPIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISLHL 60
MS+ KTPI SAN L + + KPT P+P K +VMWRN+AK+AI
Sbjct: 1 MSSGKTPIL-SANLGRDLDLII------SFEKPTNFRPNPLKKPTVMWRNIAKRAIPRAP 53
Query: 61 KK-------PFSRAYSFLGISQDSILRDKVKFVCLD---MVPRGIHEVGSGRIGEILNHE 110
+K P SR YSFLG SQD I + +KF + G E+G RIGEI + E
Sbjct: 54 RKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSRE 113
Query: 111 DYMGRTSFGVLKND---NFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQR 167
D +GR SFG L+N + +CP+ YA+VAEAVSSTDVEEDVS +EIQELL EMKKEE+R
Sbjct: 114 DAVGRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKR 173
Query: 168 EGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNL 227
+ N R + ++ RGM G+Y L+ RQVKIETEAWE AA EY+ELLMDMCEQKLAPNL
Sbjct: 174 Q-VNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNL 232
Query: 228 PYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMT 287
PYMKSLFLGWFEPLRDAI KEQE CR+ K+K AYAPYFDQLPADMM+VITMHKL+GLLMT
Sbjct: 233 PYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMT 292
Query: 288 GGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL 347
GGEHG RVVQAAC+IGDAIEQEVRIH FLEKTK+K K+K + EG + V EQEKL
Sbjct: 293 GGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDK-NVEGGGFDPVIHEQEKL 351
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD-QLA 406
RKKVT+L+KKQKL A R+IVKG D+ KPWG +A+AKVGSR+IELL QTAYIQ P D QLA
Sbjct: 352 RKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLA 411
Query: 407 DAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPV 466
D PPDI PAF H +TV +E K +++GVIEC+PLV KGLERTARHMVIPY+PMLVPP+
Sbjct: 412 DTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPL 471
Query: 467 KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526
KWTGYDKGAH FLPSYVMRTHGA+QQR+ VKR P+ QLEPVFEAL+TLGNTKWR+N R+
Sbjct: 472 KWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLF 531
Query: 527 SVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
V+DRIW+ GG LADLVDRNDVPLPEKP+TEDEAQLRKW+WKV++VKK N ERHSQRCDI
Sbjct: 532 DVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDI 591
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
ELKL+VARKMKDE+GF+YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LG SGL
Sbjct: 592 ELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGL 651
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
HWLKIHLANL+AGGVDKLSHEGR+ FTENHLDDIFDSAD+PLEG+RWWL AEDPFQ LA
Sbjct: 652 HWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAA 711
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
CINL+EALRSSSPET ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLVA EKPADVYS
Sbjct: 712 CINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYS 771
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
GIAARVL I++RDA++DPA+FPDALRA++L++QVDRKLVKQTVMTSVYGVTYIGARDQIK
Sbjct: 772 GIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIK 831
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRW 886
RRLKER A ++ ELFGA+CYAAK+TLTALGEMFQAAR IMSWLG+CAKIIASENQPVRW
Sbjct: 832 RRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRW 891
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
TTPLGLPVVQPYRKLGRH +KTSLQ+LTLQRETE +MVKRQRTAFPPNFVHSLDGSHMMM
Sbjct: 892 TTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMM 951
Query: 947 TAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL 1006
TA+AC+KAGL FAGVHDSYWTHACDVDEMNR+LREKFV+LYE PI ENLL+SFQ+SFP L
Sbjct: 952 TAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPAL 1011
Query: 1007 VFPPLPERGDFDLREVLGSPYFFN 1030
FPPLPERGDFDLREVL SPYFFN
Sbjct: 1012 EFPPLPERGDFDLREVLESPYFFN 1035
>gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris]
Length = 1020
Score = 1578 bits (4085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 763/1036 (73%), Positives = 872/1036 (84%), Gaps = 22/1036 (2%)
Query: 1 MSNNKTPIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISLHL 60
MS+ KTPI + N +KPT +P S +MWRN+ KQ S
Sbjct: 1 MSSTKTPISLTIKL------------NQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTP 48
Query: 61 KKPF----SRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRT 116
+K +R YSFLG QDSI +D KF L + +G +GE L ++++ R
Sbjct: 49 QKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRP 108
Query: 117 SFGVLKNDNFWCPRGYATVAEAV--SSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSG 174
N+NF C + YA+VAEAV SSTD EEDVS+V+E+ ELL E+KKEE+++
Sbjct: 109 LIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFA-FRR 167
Query: 175 RNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLF 234
R +R + GMG KY+ LK RQVK+ETEAWE+AA EY+ELL DMCEQKLAPNLPY+KSLF
Sbjct: 168 RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLF 227
Query: 235 LGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA 294
LGWFEPLRD IA+EQE C K K AYA YF QLPADMMAVITMHKLMGLLMTGG+HG A
Sbjct: 228 LGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTA 287
Query: 295 RVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 354
RVVQAA +IGDAIEQEVRIH FLEKTKK+ K+K+ E+G+ VT EQEKLRKKVT+L
Sbjct: 288 RVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH---VTQEQEKLRKKVTNL 344
Query: 355 IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 414
+KKQKL AV +IV+ QDD KPWGQDARAKVGSR+I+LL QTAYIQ PA+QLA PPDI P
Sbjct: 345 MKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRP 404
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
AF H++RTV+KETK S++YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKWTGYDKG
Sbjct: 405 AFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKG 464
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
H +LPSYVMRTHGA+QQR+ VKR + QL+PVFEALDTLGNTKWR+N RVLSV+DRIW+
Sbjct: 465 GHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWA 524
Query: 535 CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
GGRLADLVDR+D PLPE+P+TEDEA KW+WKV++VKKENRERHSQRCDIELKL+VAR
Sbjct: 525 GGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVAR 584
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
KMKDEE F+YPHNVDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGR LG+SGL WLKIHLA
Sbjct: 585 KMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLA 644
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NL+AGGV+KLS EGR+ FTENH+DDIFDS+DKPLEGRRWWL AEDPFQCLAVCINL+EA+
Sbjct: 645 NLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAV 704
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
RSSSPET +SHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAARVL
Sbjct: 705 RSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLD 764
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
I++RDAQRDPA FPDA+RA++L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA
Sbjct: 765 IMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 824
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
+++ELFGA+CYAAKVTLTALGEMF+AAR IM+WLGECAKIIASEN+PVRWTTPLGLPV
Sbjct: 825 IADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPV 884
Query: 895 VQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
VQPYRK+GRH +KTSLQILTLQRETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVACR+A
Sbjct: 885 VQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRA 944
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPER 1014
GL FAGVHDSYWTHACDVD++NRILREKFVELYE PI E LL+SFQ S+P L+FPPLPER
Sbjct: 945 GLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPER 1004
Query: 1015 GDFDLREVLGSPYFFN 1030
GDFD+R+VL SPYFFN
Sbjct: 1005 GDFDMRDVLESPYFFN 1020
>gi|17221593|dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|17221595|dbj|BAB78465.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1020
Score = 1575 bits (4077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/1036 (73%), Positives = 872/1036 (84%), Gaps = 22/1036 (2%)
Query: 1 MSNNKTPIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISLHL 60
MS+ KTPI + N +KPT +P S +MWRN+ KQ S
Sbjct: 1 MSSTKTPISLTIKL------------NQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTP 48
Query: 61 KKPF----SRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRT 116
+K +R YSFLG QDSI +D KF L + +G +GE L ++++ R
Sbjct: 49 QKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRP 108
Query: 117 SFGVLKNDNFWCPRGYATVAEAV--SSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSG 174
N+NF C + YA+VAEAV SSTD EEDVS+V+E+ ELL E+KKEE+++
Sbjct: 109 LIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFA-FRR 167
Query: 175 RNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLF 234
R +R + GMG KY+ LK RQVK+ETEAWE+AA EY+ELL DMCEQKLAPNLPY+KSLF
Sbjct: 168 RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLF 227
Query: 235 LGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA 294
LGWFEPLRD IA+EQE C K K AYA YF QLPADMMAVITMHKLMGLLMTGG+HG A
Sbjct: 228 LGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTA 287
Query: 295 RVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 354
RVVQAA +IGDAIEQEVRIH FLEKTKK+ K+K+ E+G+ VT EQEKLRKKVT+L
Sbjct: 288 RVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH---VTQEQEKLRKKVTNL 344
Query: 355 IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 414
+KKQKL AV +IV+ QDD KPWGQDARAKVGSR+I+LL QTAYIQ PA+QLA PPDI P
Sbjct: 345 MKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPP 404
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
AF H++RTV+KETK S++YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKWTGYDKG
Sbjct: 405 AFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKG 464
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
H +LPSYVMRTHGA+QQR+ VKR + QL+PVFEALDTLGNTKWR+N RVLSV+DRIW+
Sbjct: 465 GHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWA 524
Query: 535 CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
GGRLADLVDR+D PLPE+P+TEDEA L KW+WKV++VKKENRERHSQRCDIELKL+VAR
Sbjct: 525 GGGRLADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVAR 584
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
KMKDEE F+YPHNVDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGR LG+SGL WLKIHLA
Sbjct: 585 KMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLA 644
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NL+AGGV+KLS EGR+ FTENH+DDIFDS+DKPLEGRRWWL AEDPFQCLAVCINL+EA+
Sbjct: 645 NLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAV 704
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
RSSSPET +SHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPA+ YSGIAARVL
Sbjct: 705 RSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLD 764
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
I++RDAQRDPA FPDA+RA++L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA
Sbjct: 765 IMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 824
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
+++ELFGA+CYAAKVTLTALGEMF+AAR IM+WLGECAKIIASEN+PVRWTTPLGLPV
Sbjct: 825 IADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPV 884
Query: 895 VQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
VQPYRK+GRH +KTSLQILTLQRETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVACR+A
Sbjct: 885 VQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRA 944
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPER 1014
GL FAGVHDSYWTHACDVD++NRILREKFVELYE PI E LL+SFQ S+P L+FPPLPER
Sbjct: 945 GLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPER 1004
Query: 1015 GDFDLREVLGSPYFFN 1030
GDFD+R+VL SPYFFN
Sbjct: 1005 GDFDMRDVLESPYFFN 1020
>gi|88933966|sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 1572 bits (4071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/1042 (73%), Positives = 877/1042 (84%), Gaps = 33/1042 (3%)
Query: 1 MSNNKTPIFFSA--NKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58
MS+ KTPI + N+F P + N Y+N S +MWRN+ KQ S
Sbjct: 1 MSSTKTPISLTIKLNQFTDKPTGL-DINRYHN-------------SPIMWRNIIKQLSSR 46
Query: 59 HLKKPF----SRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMG 114
+K +R YSFLG QDS+ +D KF L + +G +GE L ++++
Sbjct: 47 TPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLS 106
Query: 115 RTSFGVLKN----DNFWCPRGYATVAEAV--SSTDVEEDVSIVEEIQELLQEMKKEEQRE 168
R +LKN ++F C + YA+VAEAV SSTD EEDVS+V+E+QELL E+KKEE+++
Sbjct: 107 RP---LLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQ 163
Query: 169 GENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLP 228
R +R + GMG KY+ LK RQVK+ETEAWE+AA EY+ELL DMCEQKLAPNLP
Sbjct: 164 FAFRR-RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLP 222
Query: 229 YMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG 288
Y+KSLFLGWFEPLRD IA+EQE C K K AYA Y QLPADMMAVITMHKLMGLLMTG
Sbjct: 223 YVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTG 282
Query: 289 GEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLR 348
G+HG ARVVQAA +IGDAIEQEVRIH FLEKTKK+ K+K+ E+G+ VT EQEKLR
Sbjct: 283 GDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH---VTQEQEKLR 339
Query: 349 KKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA 408
KKVT+L+KKQKL AV +IV+ QDD KPWGQDA+AKVGSR+IELL QTAYIQ PA+QLA
Sbjct: 340 KKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVD 399
Query: 409 PPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKW 468
PPDI PAF H++RTV+KETK S++YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKW
Sbjct: 400 PPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKW 459
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
TGYDKG H +LPSYVMRTHGA+QQR+ VKR + QL+PVFEALDTLG+TKWR+N RVLSV
Sbjct: 460 TGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSV 519
Query: 529 LDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+DRIW+ GGRLADLVDR+D PLPE+P+TEDEA KW+WKV++VKKENRERHSQRCDIEL
Sbjct: 520 IDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIEL 579
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
KL+VARKMKDEEGF+YPHNVDFRGRAYPMHP+LNHLGSD+CRG+L FAEGR LG+SGL W
Sbjct: 580 KLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRW 639
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIHLANL+AGGV+KLS EGR+AFTENH+DDIFDSADKPLEGRRWWL AEDPFQCLAVCI
Sbjct: 640 LKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCI 699
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
NL+EA+RSSSPET ISHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGI
Sbjct: 700 NLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGI 759
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
AARVL I++RDAQRDPA FPDA+RA+ L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRR
Sbjct: 760 AARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 819
Query: 829 LKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTT 888
LKERGA +++ELFGA+CYAAKVTLTALGEMF+AAR IM+WLGECAKIIASEN+PVRWTT
Sbjct: 820 LKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTT 879
Query: 889 PLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
PLGLPVVQPYRK+GRH +KTSLQILTLQ+ETEKVMVKRQRTAFPPNF+HSLDGSHMMMTA
Sbjct: 880 PLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTA 939
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
VACR+AGL FAGVHDSYWTHACDVD++NRILREKFVELYE PI E LL+SFQ S+P L+F
Sbjct: 940 VACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLF 999
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
PPLPERGDFDLR+VL SPYFFN
Sbjct: 1000 PPLPERGDFDLRDVLESPYFFN 1021
>gi|225425009|ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1491 bits (3860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 731/988 (73%), Positives = 828/988 (83%), Gaps = 14/988 (1%)
Query: 47 MWRNVAKQAISLHLK-KPFSRAYSFLGISQDSILRDKVKFV-CLDMVPRGIHEVGSGRIG 104
MWRN+AK A + L+ ++S + DK + + D V G RIG
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIG 60
Query: 105 EILNHEDYMGRTSFGVLKND-NFWCPRGYAT-VAEAVSSTDVEEDVSIVEEIQELLQEMK 162
+ +D +GR FGV K NF+ GY A A + EED+S V+E+QEL++E+
Sbjct: 61 VLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELVEEVN 120
Query: 163 KEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQK 222
K ++ E + ++ G+ GK+ +L+ RQ+K+ETEAWE+AA EYRELL DMCEQK
Sbjct: 121 KGDKLEKQP-------KLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQK 173
Query: 223 LAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
LAPNLPY+KSLFLGWFEPLRD IA EQ+ C+ K++ AYAPYFD LPADMMAVITMHKLM
Sbjct: 174 LAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLM 233
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
GLLMTG +G ARVVQAAC IG+AIE EVRI +F+EKTKKK+ + N D SN VT
Sbjct: 234 GLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPD---GGSNPVTK 290
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA 402
EQEKLRKKV+ L+KKQKL VR+IVK QDD KPWGQDA KVGSR+IELL +TAYIQ PA
Sbjct: 291 EQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPA 350
Query: 403 DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPML 462
DQL D PPDI PAF H L+TV KET+ G+++YGVIEC+PLV KGLE+TARHMVIPYMPML
Sbjct: 351 DQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPML 410
Query: 463 VPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVN 522
VPP+ WTGYDKGA+ FLPSYVMR HGA+QQR+ +KR P+K LEP FEAL+TLGNTKWR+N
Sbjct: 411 VPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRIN 470
Query: 523 NRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQ 582
RVL V+DRIW+ GGRLADLVDR DVPLPE+P+TEDEA++RKW+WKVR+VKKEN ERHSQ
Sbjct: 471 KRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQ 530
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
RCDIELKL+VARKMKDE+GF+YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LG
Sbjct: 531 RCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG 590
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
KSGL WLKIHLAN+YAGGVDKLS+EGR+AFTENHL+DIFDSAD+PLEGRRWWL AEDPFQ
Sbjct: 591 KSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQ 650
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
CLA CINL+EALRSSSPET ISH+PVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPA
Sbjct: 651 CLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPA 710
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
DVYSGIAARVL I+QRDAQ+DPA P+ALRA+LL+SQVDRKLVKQTVMTSVYGVTYIGAR
Sbjct: 711 DVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGAR 770
Query: 823 DQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ 882
DQIKRRLKER A +E E+F ASCYAAK TLTALGEMF+AAR IMSWLG+CAK+IASEN
Sbjct: 771 DQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENH 830
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGS 942
PVRW TPLGLPVVQPYRKLGRH +KTSLQ+L+LQRET+KVMVKRQRTAFPPNFVHSLDGS
Sbjct: 831 PVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGS 890
Query: 943 HMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKS 1002
HMMMTAVAC+KAGL FAGVHDSYWTHACDVDEMNRILREKFVELY MPI ENLL+ FQKS
Sbjct: 891 HMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKS 950
Query: 1003 FPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 951 FPTLNFPPLPERGDFDLREVLESPYFFN 978
>gi|449447681|ref|XP_004141596.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 984
Score = 1442 bits (3733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/997 (70%), Positives = 815/997 (81%), Gaps = 26/997 (2%)
Query: 47 MWRNVAKQAISLHLK-----KPFSRAYSFLGISQDSILRDKV---KFVCLDMVPRGIHEV 98
MW+ +AK+ I + + + SR LG +S+ RDK+ FV + G E+
Sbjct: 1 MWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKFGSFEM 60
Query: 99 GSGRIGEILNHEDYM-GRTSFGVLKND---NFWCPRGYATVAEAVSSTDVEEDVSIVEEI 154
G GR EIL+ EDY R FG + N CP+GY++VAEAVSSTDV+ED S+ ++
Sbjct: 61 GVGR-SEILSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASVDGKV 119
Query: 155 QELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYREL 214
QE +QEM KEE+R + +GMG KY ML+ RQV IE EAWE AA EYREL
Sbjct: 120 QESVQEMSKEEKR----------LKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEYREL 169
Query: 215 LMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVA-YAPYFDQLPADMM 273
L+DMC+QKLAPNLPY+KSLFLGWFEP +DAI KEQE + K A YAPYF QLPAD M
Sbjct: 170 LVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPADKM 229
Query: 274 AVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEE 333
+VITMHKLMGLLM G EHG RVVQAAC IGDAIEQEVRIHKFLEK KK T NK++E
Sbjct: 230 SVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEK--KKERTHNKDNEN 287
Query: 334 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 393
D+ + EQE+LRKKVT+LIKK+K A +I K DD +PWG++ +AKVG+R+IELL
Sbjct: 288 NDQPDIERKEQERLRKKVTNLIKKKKHLAAGQIAKRADDSRPWGRELKAKVGARLIELLI 347
Query: 394 QTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH 453
QTAYIQ PADQLAD PPD PAF H+L+T K+ + GVIEC+PLV+KGL+ TAR
Sbjct: 348 QTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGTNFMGRLGVIECDPLVVKGLDWTARQ 407
Query: 454 MVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDT 513
+VIPYMPML+PPVKW GYDKG H LPS+ MRTHGAKQQRD KRTPK+QL PVFEALDT
Sbjct: 408 IVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEALDT 467
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVK 573
LGNTKWR+N R+L+V++RIW+ GG LA LVD++DVPLPEKP+TEDE ++KW+W+VR+VK
Sbjct: 468 LGNTKWRINKRILNVVERIWTSGGHLAGLVDQDDVPLPEKPDTEDETLIKKWKWEVRSVK 527
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
KEN ERHSQRCDIELKL+VARKMKDEEGFYYPHNVDFRGRAYPMHP+LNHLGSDLCRGIL
Sbjct: 528 KENMERHSQRCDIELKLTVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGIL 587
Query: 634 EFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
EFAEGR+L KSGL WLKIHLANL+AGGVDKLSH+GR+ F ENHL+DIFDSAD+PLEG RW
Sbjct: 588 EFAEGRSLRKSGLIWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGGRW 647
Query: 694 WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
W+ AEDPFQ LA C+NLTEALRSSSPET+ISHIP+HQDGSCNGLQHYAALGRD GAAAV
Sbjct: 648 WMNAEDPFQFLAGCMNLTEALRSSSPETYISHIPIHQDGSCNGLQHYAALGRDKSGAAAV 707
Query: 754 NLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSV 813
NLVA EKPADVYSGIAARVL I++RDAQ+DP FPDAL AK+L+ QVDRKLVKQTVMTSV
Sbjct: 708 NLVAGEKPADVYSGIAARVLEILKRDAQKDPETFPDALHAKILIDQVDRKLVKQTVMTSV 767
Query: 814 YGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
YGVTYIGARDQIKRRLKER A +++ELFG SCYAAK+TL ALGEMF AAR IM+WL +C
Sbjct: 768 YGVTYIGARDQIKRRLKERAAISDDSELFGCSCYAAKITLEALGEMFVAAREIMNWLSDC 827
Query: 874 AKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPP 933
AKIIAS+N+ VRWTTPLGLPVVQPYRKLG H +KTSLQ+LTL+RET+K++ RQRTAFPP
Sbjct: 828 AKIIASKNETVRWTTPLGLPVVQPYRKLGIHAIKTSLQVLTLRRETDKILSSRQRTAFPP 887
Query: 934 NFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFE 993
NFVHSLD SHMMMTAVAC++AGL FAGVHDSYWTHACDVDEMNRILREKFVELYE PI E
Sbjct: 888 NFVHSLDSSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILE 947
Query: 994 NLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
NLL+SF++SFP L FPPLPERG+F+L+EVL SPYFFN
Sbjct: 948 NLLESFEQSFPALDFPPLPERGEFNLKEVLDSPYFFN 984
>gi|62750823|emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 1036
Score = 1433 bits (3710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/1037 (67%), Positives = 836/1037 (80%), Gaps = 23/1037 (2%)
Query: 7 PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAIS----LHLKK 62
P S N FD Y + +N+ N P S++MWRN AKQAIS L L+K
Sbjct: 10 PAVLSQN-FDPYIQIYKSRSNFLIN--------PCFDSTIMWRNFAKQAISRTPNLCLRK 60
Query: 63 -PFSRAYSFLGISQDSILRDKVKFVCLDM---VPRGIHEVGSGRIGEILNHEDYMGRTSF 118
SR+YSFLG + D D++KF ++ R EVG R G L E R
Sbjct: 61 FSISRSYSFLGGTHDCGFSDRLKFRPFELGFCKNRSFSEVGFCREGGSLVKEGIGERPVS 120
Query: 119 GVLKND---NFWCPRGYATVAEAV--SSTDVEEDVSIVEEIQELLQEMKKEEQREGENGS 173
G L N N CP+GYA+V EA SSTD+E+DVS+ +EIQEL++EM+KEE+R S
Sbjct: 121 GCLGNRLNFNVVCPKGYASVVEAEVDSSTDLEDDVSVFDEIQELVEEMRKEEKRAKWRES 180
Query: 174 GRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL 233
+ ++++ GM KY+ L+ RQ+K+ETE+W++AANEY+ELL DMC+ KLAPNLPY+KSL
Sbjct: 181 HQRQQKMVAGMPLYKYQKLRNRQIKLETESWQQAANEYKELLADMCKLKLAPNLPYVKSL 240
Query: 234 FLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
FLGWFEP RD+I ++QE R K + AY YFDQLPADMMA+ITMHKLMG+LMTG HG
Sbjct: 241 FLGWFEPFRDSIIEDQELIRQGKCRGAYGTYFDQLPADMMAIITMHKLMGMLMTGSGHGS 300
Query: 294 ARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTD 353
+VVQAAC +G+AIEQEVRIH FLEK KKK ++K+ ++ S+ EQ+ LRK V +
Sbjct: 301 VKVVQAACALGEAIEQEVRIHTFLEKAKKKKGDRSKKPDDA-ASDAEIQEQQHLRKNVNN 359
Query: 354 LIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF 413
LIKKQK +IV Q D KPWG + RAKVGSR+IELL QTAYIQ PA Q A PPD+
Sbjct: 360 LIKKQKRRQALKIVDSQGDLKPWGSETRAKVGSRLIELLIQTAYIQPPASQSACDPPDLR 419
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDK 473
PAF H+L++V E K +++G+IEC+PL++KGLE+T RH+VIPYMPMLVPP KWTGYDK
Sbjct: 420 PAFVHSLKSVGPENKKTGRRFGMIECDPLIIKGLEKTPRHIVIPYMPMLVPPEKWTGYDK 479
Query: 474 GAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
GA+ L S+VMRTHG+K QR V+R ++QL+ VFEALDTLGNTKWRVN +VLS++DR+W
Sbjct: 480 GAYLVLRSFVMRTHGSKHQRVAVRRASEEQLKSVFEALDTLGNTKWRVNKKVLSIVDRVW 539
Query: 534 SCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVA 593
+ GGRLADLVDR+DVPLPEKP+TEDE++L++W+WKVR++KKENRERHSQRCD+ELKL+VA
Sbjct: 540 ANGGRLADLVDRDDVPLPEKPDTEDESELKRWKWKVRSLKKENRERHSQRCDVELKLAVA 599
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHL 653
RKMKDEEGF+YPHNVDFRGRAYPMHPYLNHLGSD+CRGILEFAEGR +GKSGL WLKIH+
Sbjct: 600 RKMKDEEGFFYPHNVDFRGRAYPMHPYLNHLGSDMCRGILEFAEGRAVGKSGLRWLKIHV 659
Query: 654 ANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA 713
ANLYAGG+DKLS EGR+AFTENHLDDIFDS DKPLEGR WWLKAEDPFQCLAVCI L EA
Sbjct: 660 ANLYAGGIDKLSLEGRIAFTENHLDDIFDSVDKPLEGRCWWLKAEDPFQCLAVCIELAEA 719
Query: 714 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL 773
LRS+ PE F SHIPVHQDGSCNGLQHYAALGRD LGA AVNLVA EKPADVYSGIA+RVL
Sbjct: 720 LRSTRPEAFKSHIPVHQDGSCNGLQHYAALGRDELGATAVNLVAGEKPADVYSGIASRVL 779
Query: 774 VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
I++ DA++DP FPD + A+ L++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER
Sbjct: 780 SIMEADAKKDPTDFPDTVLARKLINQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERA 839
Query: 834 APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLP 893
A ++ E++GA+CY A++TLTALGEMFQAAR IMSWLG+CAKIIASENQPVRW TPLGLP
Sbjct: 840 AFSDDTEIYGAACYVARITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWITPLGLP 899
Query: 894 VVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
VVQPY K GRH +KTSLQ+LTL++ETEK+MV+RQ++AFPPNFVHSLDGSHMMMTAVAC+
Sbjct: 900 VVQPYCKKGRHLIKTSLQMLTLEKETEKIMVRRQKSAFPPNFVHSLDGSHMMMTAVACKH 959
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPE 1013
AGL FAGVHDSYWTHACDVD+M+ ILREKFVELY+ PI ENLL++FQ+S+P L FPPLP+
Sbjct: 960 AGLNFAGVHDSYWTHACDVDQMSSILREKFVELYDQPILENLLETFQQSYPTLSFPPLPD 1019
Query: 1014 RGDFDLREVLGSPYFFN 1030
RGDF+LR+VL SPYFFN
Sbjct: 1020 RGDFELRDVLDSPYFFN 1036
>gi|224119272|ref|XP_002331270.1| predicted protein [Populus trichocarpa]
gi|222873695|gb|EEF10826.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 1429 bits (3700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 692/848 (81%), Positives = 759/848 (89%), Gaps = 2/848 (0%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MGSGKY+ L+ RQVKIE EAWE+AA EY+ELL DMCE KLAPNLPYMK LFLGWFEPLRD
Sbjct: 1 MGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRD 60
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
AIAKEQE R K + Y+PYFD LPADMM+VITMHKL ++M GGEHG ARVV AAC+I
Sbjct: 61 AIAKEQESIRRGKTRPDYSPYFDLLPADMMSVITMHKLTAMVMIGGEHGCARVVAAACMI 120
Query: 304 GDAIEQEVRIHKFLEKTKKKNET-KNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
GDAIEQE+RIH FLEKT+KK E N ++ ES V E+EKLRKKVTDLIKKQKLPA
Sbjct: 121 GDAIEQEIRIHNFLEKTRKKKENADNSKNSVEGESPAVMNEEEKLRKKVTDLIKKQKLPA 180
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR+IVKG DD K W DA+AKVGSR+IELL QTAYIQ P DQLAD+PPD+ PAF H RT
Sbjct: 181 VRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYIQPPPDQLADSPPDLRPAFVHTFRT 240
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
VS E K S+KYGVI+C+ LVLKGLE+T RH+VIPYMPMLVPP++W GYDKGAH FLPSY
Sbjct: 241 VSYENKKTSRKYGVIQCDSLVLKGLEQTDRHIVIPYMPMLVPPLRWRGYDKGAHLFLPSY 300
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMR HGAKQQR+ VKRTPKKQL+ VFEALDTLGNTKWRVN RVLSV+DRIW+ GGRLADL
Sbjct: 301 VMRIHGAKQQREAVKRTPKKQLQLVFEALDTLGNTKWRVNKRVLSVVDRIWNNGGRLADL 360
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR+DVPLPEKPETEDEA L+KW+WKV++VKKENRERHS+RCD ELK++VARKMK+EEGF
Sbjct: 361 VDRSDVPLPEKPETEDEALLKKWKWKVKSVKKENRERHSRRCDTELKIAVARKMKNEEGF 420
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLKIHLANL+A GVD
Sbjct: 421 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFACGVD 480
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLSHEGR+AFTENHLDDIFDSADKPLEG+RWWL AEDPFQCLAVCINLTEALRSSSPET
Sbjct: 481 KLSHEGRIAFTENHLDDIFDSADKPLEGKRWWLHAEDPFQCLAVCINLTEALRSSSPETC 540
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
+SHIP+HQDGSCNGLQHYAALGRD LGAAAVNLVA EKP DVYSGIAARVL I++ DAQ
Sbjct: 541 LSHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPTDVYSGIAARVLDIMRSDAQE 600
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP VFPDALRA+ L+SQVDRKLVKQTVMTSVYGVTYIGARDQI+RRLKERG + +E+F
Sbjct: 601 DPEVFPDALRARRLISQVDRKLVKQTVMTSVYGVTYIGARDQIERRLKERGL-TDNSEIF 659
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
G SCYAAKVTLTALGEMF+AAR IM+WLGECAKIIASEN+PVRWTTPLGLPVVQPYRKLG
Sbjct: 660 GCSCYAAKVTLTALGEMFEAARSIMNWLGECAKIIASENEPVRWTTPLGLPVVQPYRKLG 719
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
+H +KTSLQ LTLQ+ET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++AGL FAGVH
Sbjct: 720 KHVIKTSLQFLTLQKETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLKFAGVH 779
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVDEMNRILREKFVELYE PI +NLL+SFQKSFP L FPPLPE GDF+LR+V
Sbjct: 780 DSYWTHACDVDEMNRILREKFVELYETPILKNLLESFQKSFPTLSFPPLPEWGDFELRQV 839
Query: 1023 LGSPYFFN 1030
L SPYFFN
Sbjct: 840 LESPYFFN 847
>gi|356567146|ref|XP_003551782.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 992
Score = 1429 bits (3700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 709/905 (78%), Positives = 799/905 (88%), Gaps = 8/905 (0%)
Query: 130 RGYATVAEAVSSTDVEED-VSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGK 188
+GY+ VAEAVSSTDVEED + V+ IQELLQ MKKE+Q++ +N+ +G+G +
Sbjct: 92 KGYSGVAEAVSSTDVEEDEAAPVDGIQELLQGMKKEKQKKVVGYRWKNQ---GKGVGQSR 148
Query: 189 YRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE 248
Y+ L+ RQVKIETE WE+AA EYRELLMDMCE KLAPNLPYMKSLFLGWFEPLRDAI KE
Sbjct: 149 YQELRRRQVKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVKE 208
Query: 249 QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH---GRARVVQAACIIGD 305
QE K+++AYAPYF QLPAD MAVI MHKLMGLLMTG E G ARVVQAAC IGD
Sbjct: 209 QEMYSEGKNRMAYAPYFVQLPADKMAVIAMHKLMGLLMTGNERVTIGTARVVQAACGIGD 268
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
AIE EVRIHKFLEKTKKK ++ +++ G ES E++KLRKKV DL+KKQKL AVR
Sbjct: 269 AIENEVRIHKFLEKTKKKKGDRSNKNKAG-ESVADIKEEQKLRKKVIDLMKKQKLVAVRG 327
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+VKG+DD KPWG + KVGSR+IELL QTAYIQ P+DQL DA PDI PAF H+ +TV+K
Sbjct: 328 LVKGKDDTKPWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAAPDIRPAFVHSFKTVTK 387
Query: 426 ETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
E+ S++YG+I+C+PL+LKGLERTA++MVIPYMPMLVPPV WTGYDKG H FLPSYVMR
Sbjct: 388 ESIKASRRYGIIQCDPLILKGLERTAKNMVIPYMPMLVPPVNWTGYDKGGHLFLPSYVMR 447
Query: 486 THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
THG +QQR+ VKR P+KQLEPVFEALDTLG+TKWRVN +VLSV+DRIW+ GGR+ADLVDR
Sbjct: 448 THGVRQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDRIWASGGRIADLVDR 507
Query: 546 NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
+DVPLP++P+T+DEA+++KW+WK ++++KENRER+SQRCDIELKL+VARKMKDEEGFYYP
Sbjct: 508 DDVPLPDEPDTDDEAKIKKWKWKYKSLQKENRERYSQRCDIELKLAVARKMKDEEGFYYP 567
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR+LGKSGL WLKIHLANLYAGGVDKLS
Sbjct: 568 HNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAGGVDKLS 627
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
+EGRLAFTENH +DIFDSADKPLEGRRWWLKAEDP QCLAVCI LTEALRSSSPETFISH
Sbjct: 628 YEGRLAFTENHFEDIFDSADKPLEGRRWWLKAEDPLQCLAVCITLTEALRSSSPETFISH 687
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
IPVHQDGSCNGLQHYAALGRD LGAAAVNLV EKPADVYSGIAARV I+QRDAQ+DPA
Sbjct: 688 IPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKPADVYSGIAARVSNIMQRDAQKDPA 747
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
VF DAL A+ L++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER A ++ ELFGAS
Sbjct: 748 VFRDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNAISDDKELFGAS 807
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHT 905
CYAAKVTLTAL EMFQ ARGIMSWLG+CAK+IASENQPVRWTTPLGLPVVQPYRKLG+H
Sbjct: 808 CYAAKVTLTALEEMFQGARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYRKLGKHI 867
Query: 906 VKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
+KTSLQILTLQRET+KVMV RQRTAFPPNFVHSLDGSHMMMTAVAC+K GL+FAGVHDSY
Sbjct: 868 IKTSLQILTLQRETDKVMVTRQRTAFPPNFVHSLDGSHMMMTAVACKKEGLSFAGVHDSY 927
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGS 1025
WTHACDVD+MNRILREKFVELYE P+ ENLL+SFQ SFP L FP LPERGDFDL+EVL S
Sbjct: 928 WTHACDVDKMNRILREKFVELYETPVLENLLESFQSSFPSLSFPSLPERGDFDLKEVLES 987
Query: 1026 PYFFN 1030
PYFFN
Sbjct: 988 PYFFN 992
>gi|297738211|emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 1414 bits (3661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 667/813 (82%), Positives = 733/813 (90%), Gaps = 3/813 (0%)
Query: 218 MCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVIT 277
MCEQKLAPNLPY+KSLFLGWFEPLRD IA EQ+ C+ K++ AYAPYFD LPADMMAVIT
Sbjct: 1 MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60
Query: 278 MHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDES 337
MHKLMGLLMTG +G ARVVQAAC IG+AIE EVRI +F+EKTKKK+ + N D S
Sbjct: 61 MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPD---GGS 117
Query: 338 NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAY 397
N VT EQEKLRKKV+ L+KKQKL VR+IVK QDD KPWGQDA KVGSR+IELL +TAY
Sbjct: 118 NPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAY 177
Query: 398 IQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP 457
IQ PADQL D PPDI PAF H L+TV KET+ G+++YGVIEC+PLV KGLE+TARHMVIP
Sbjct: 178 IQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIP 237
Query: 458 YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNT 517
YMPMLVPP+ WTGYDKGA+ FLPSYVMR HGA+QQR+ +KR P+K LEP FEAL+TLGNT
Sbjct: 238 YMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNT 297
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENR 577
KWR+N RVL V+DRIW+ GGRLADLVDR DVPLPE+P+TEDEA++RKW+WKVR+VKKEN
Sbjct: 298 KWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENS 357
Query: 578 ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE 637
ERHSQRCDIELKL+VARKMKDE+GF+YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAE
Sbjct: 358 ERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAE 417
Query: 638 GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
GR LGKSGL WLKIHLAN+YAGGVDKLS+EGR+AFTENHL+DIFDSAD+PLEGRRWWL A
Sbjct: 418 GRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSA 477
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA 757
EDPFQCLA CINL+EALRSSSPET ISH+PVHQDGSCNGLQHYAALGRD LGAAAVNLVA
Sbjct: 478 EDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVA 537
Query: 758 REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVT 817
EKPADVYSGIAARVL I+QRDAQ+DPA P+ALRA+LL+SQVDRKLVKQTVMTSVYGVT
Sbjct: 538 GEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVT 597
Query: 818 YIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKII 877
YIGARDQIKRRLKER A +E E+F ASCYAAK TLTALGEMF+AAR IMSWLG+CAK+I
Sbjct: 598 YIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVI 657
Query: 878 ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVH 937
ASEN PVRW TPLGLPVVQPYRKLGRH +KTSLQ+L+LQRET+KVMVKRQRTAFPPNFVH
Sbjct: 658 ASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVH 717
Query: 938 SLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD 997
SLDGSHMMMTAVAC+KAGL FAGVHDSYWTHACDVDEMNRILREKFVELY MPI ENLL+
Sbjct: 718 SLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLE 777
Query: 998 SFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FQKSFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 778 GFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810
>gi|115478128|ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica Group]
gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza sativa Japonica Group]
Length = 1017
Score = 1414 bits (3660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/848 (77%), Positives = 751/848 (88%), Gaps = 1/848 (0%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
G+G KY ML+ RQ++IETEAWE+AA EYRELL DMC+QKLAPNLPY+KSLFLGWFEPLR
Sbjct: 171 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 230
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D I EQE + ++A YF+ LPADMMAVITMHKLMGLLMTG G RV+QAAC
Sbjct: 231 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 290
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG+AIE EVRIHKFLEKTKKK+ + +EEG +S+ + EQE+LRKKVTDL+KKQK+
Sbjct: 291 IGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQKIRQ 349
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR IVK QD+ KPWGQDA AKVGSR+IEL+ +TAYIQ PA Q AD PPDI PAFTH +RT
Sbjct: 350 VRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRT 409
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
V++E + S++YGVI+C+PLV +GL+RTA+HMVIPYMPML+PP+ WTGYDKGAH FLPSY
Sbjct: 410 VAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSY 469
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMRTHGA+QQRD V+R P++Q++ VFEAL+TLG+TKWRVN RVLS++DRIWS GGRLADL
Sbjct: 470 VMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADL 529
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR DV LPEKP+TEDE +L+KW+W +R KKEN ERHSQRCD+ELKL+VARKMKDE+GF
Sbjct: 530 VDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGF 589
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LEFAEGR LGKSGL WLKIHLANLYAGGVD
Sbjct: 590 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVD 649
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS++GR+AFTENHL+DIFDSAD+PLEG+RWWL AEDPFQCLAVCINLTEALRS SPET
Sbjct: 650 KLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETM 709
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLVA EKPADVY+GIA RV+ I++ DA +
Sbjct: 710 ISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALK 769
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DPA PDA RA+LLL QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRLKER +++ELF
Sbjct: 770 DPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELF 829
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
ASCYAAKVTLTALGEMFQAAR IM+WLG+CAK+IA EN+PVRWTTPLGLPVVQPYRKLG
Sbjct: 830 SASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 889
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVH
Sbjct: 890 RHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVH 949
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVD MN+ILREKFVELY+ PI ENLL+SF+KSFP+L FPPLPERGDFDL +V
Sbjct: 950 DSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTDV 1009
Query: 1023 LGSPYFFN 1030
LGSPYFFN
Sbjct: 1010 LGSPYFFN 1017
>gi|222641119|gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 1413 bits (3657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/848 (77%), Positives = 751/848 (88%), Gaps = 1/848 (0%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
G+G KY ML+ RQ++IETEAWE+AA EYRELL DMC+QKLAPNLPY+KSLFLGWFEPLR
Sbjct: 137 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 196
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D I EQE + ++A YF+ LPADMMAVITMHKLMGLLMTG G RV+QAAC
Sbjct: 197 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 256
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG+AIE EVRIHKFLEKTKKK+ + +EEG +S+ + EQE+LRKKVTDL+KKQK+
Sbjct: 257 IGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQKIRQ 315
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR IVK QD+ KPWGQDA AKVGSR+IEL+ +TAYIQ PA Q AD PPDI PAFTH +RT
Sbjct: 316 VRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRT 375
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
V++E + S++YGVI+C+PLV +GL+RTA+HMVIPYMPML+PP+ WTGYDKGAH FLPSY
Sbjct: 376 VAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSY 435
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMRTHGA+QQRD V+R P++Q++ VFEAL+TLG+TKWRVN RVLS++DRIWS GGRLADL
Sbjct: 436 VMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADL 495
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR DV LPEKP+TEDE +L+KW+W +R KKEN ERHSQRCD+ELKL+VARKMKDE+GF
Sbjct: 496 VDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGF 555
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LEFAEGR LGKSGL WLKIHLANLYAGGVD
Sbjct: 556 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVD 615
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS++GR+AFTENHL+DIFDSAD+PLEG+RWWL AEDPFQCLAVCINLTEALRS SPET
Sbjct: 616 KLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETM 675
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLVA EKPADVY+GIA RV+ I++ DA +
Sbjct: 676 ISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALK 735
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DPA PDA RA+LLL QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRLKER +++ELF
Sbjct: 736 DPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELF 795
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
ASCYAAKVTLTALGEMFQAAR IM+WLG+CAK+IA EN+PVRWTTPLGLPVVQPYRKLG
Sbjct: 796 SASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 855
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVH
Sbjct: 856 RHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVH 915
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVD MN+ILREKFVELY+ PI ENLL+SF+KSFP+L FPPLPERGDFDL +V
Sbjct: 916 DSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTDV 975
Query: 1023 LGSPYFFN 1030
LGSPYFFN
Sbjct: 976 LGSPYFFN 983
>gi|15823750|dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1408 bits (3645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/1015 (69%), Positives = 816/1015 (80%), Gaps = 44/1015 (4%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVK-FVCLDMVPRGIHEVG------ 99
MWR ++KQA S + S + LG SQ S K + CL +G
Sbjct: 1 MWRYISKQAYSRKFRN--SHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSI 58
Query: 100 SGRIGEILNHEDYMGRTS-------------FGVLKNDNFWCP----------RGYATVA 136
RI + H + + S F +K D C R Y + A
Sbjct: 59 FSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSAA 118
Query: 137 EAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQ 196
EA++ST EED +EIQEL++EM KE + N + + + GMG GKY +L+ RQ
Sbjct: 119 EAIASTS-EEDT---DEIQELIEEMNKENEALKTNLQPKQPKTIG-GMGVGKYNLLRRRQ 173
Query: 197 VKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAK 256
+K+ETEAWE+AA EY+ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA EQ+ C K
Sbjct: 174 IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233
Query: 257 HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKF 316
++ A AP+FDQLPA+MMAVITMHKLMG LMTGG G ARVVQAA IG+AIE E RIH+F
Sbjct: 234 NRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293
Query: 317 LEKTKKKNE-TKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
LEKTKK N + + ED GD + E+E++RKKV L+KKQKL VR+IVK QDD KP
Sbjct: 294 LEKTKKSNALSGDLEDTPGD----IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKP 349
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
WGQD KVG R+I++L +TAYIQ P DQL D PPDI PAF H L+TV ET GS++YG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYG 407
Query: 436 VIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDT 495
VI+C+PLV KGL++TARHMVIPYMPMLVPP W GYDKGA+ FLPSY+MRTHGAKQQR+
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREA 467
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE 555
VKR PKKQLEPVF+ALDTLGNTKWR+N +VL ++DRIW+ GGRLADLVDR DVPLPE+P+
Sbjct: 468 VKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPD 527
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
EDEAQ+RKW+WKV+ VKKEN ERHSQRCDIELKL+VARKMKDE+GFYYPHN+DFRGRAY
Sbjct: 528 AEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAY 587
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
PMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLKIHLAN+Y GGVDKLS+EGR+AF+EN
Sbjct: 588 PMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSEN 647
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCN 735
H++DIFDSA++PLEG+RWWL AEDPFQCLA CIN+ EALRS SPET IS++P+HQDGSCN
Sbjct: 648 HVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCN 707
Query: 736 GLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKL 795
GLQHYAALGRDTLGAAAVNLVA +KPADVYSGIAARVL I++RDA +DPA P+ +RA+L
Sbjct: 708 GLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARL 767
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTA 855
L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG ++ ELF A+CYAAK TLTA
Sbjct: 768 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTA 827
Query: 856 LGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
LGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPLGLPVVQPYRKLGRH +KTSLQILTL
Sbjct: 828 LGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTL 887
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
QRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+++GL+FAGVHDSYWTHA DVD+M
Sbjct: 888 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQM 947
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
N+ILREKFVELY+ PI ENLL+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 948 NKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>gi|356523672|ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 1015
Score = 1403 bits (3632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/1039 (70%), Positives = 826/1039 (79%), Gaps = 79/1039 (7%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEI 106
MWR+ AK A +++ F + L +S SI K + L V R ++ +G G
Sbjct: 1 MWRHAAKHACRGSIRQSFHPS-RLLSLSHGSIFSPK-REAFLYSVAR-LNCIGRG----- 52
Query: 107 LNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSI---------------- 150
D+ + FG +GY+ VAEA SSTDVEED
Sbjct: 53 ----DF--QFQFGA---------KGYSGVAEAASSTDVEEDGVFVDEIQQLLLQEMNDEV 97
Query: 151 -----------VEEIQE-LLQEMKKEEQRE----------GENG-------------SGR 175
++EIQ+ LL EM KEE+ E G G G
Sbjct: 98 ESQLVEEEGAPIDEIQQLLLHEMHKEERNELVEEQAAPGDGIRGLFQGMKKEKQKKVVGY 157
Query: 176 NR-RRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLF 234
NR + +G+G +Y+ L+ RQVKIETE WE+AA EYRELLMDMCE KLAPNLPYMKSLF
Sbjct: 158 NRWQNEGKGVGQCRYQELRRRQVKIETETWEEAAKEYRELLMDMCEHKLAPNLPYMKSLF 217
Query: 235 LGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH--- 291
LGWFEPLRDAI KEQE K++ AY PYF QLPAD MAVI MHKLMGLLMTG EH
Sbjct: 218 LGWFEPLRDAIVKEQEMYGEGKNRTAYVPYFVQLPADKMAVIAMHKLMGLLMTGTEHATV 277
Query: 292 GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKV 351
G ARVVQAAC IGDAIE EVRIHKFLEKTKKK ++K++ + ES E++KLRKKV
Sbjct: 278 GTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSKKN-KASESVADIKEEQKLRKKV 336
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
DL+KKQKL AVR +VKG+DD KPWG + KVGSR+IELL QTAYIQ P DQL DA PD
Sbjct: 337 IDLMKKQKLVAVRGLVKGKDDTKPWGAAIKTKVGSRLIELLMQTAYIQPPPDQLLDAAPD 396
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGY 471
I PAF H+ RTV+K + SK+YG+++C+PL+LKGLERTA++MVIPYMPMLVPPV W+GY
Sbjct: 397 IRPAFVHSFRTVAKVSAKASKRYGIVQCDPLILKGLERTAKNMVIPYMPMLVPPVNWSGY 456
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
DKG H FLPSYVMRTHGA+QQR+ VKR P+KQLEPVFEALDTLG+TKWRVN +VLSV+DR
Sbjct: 457 DKGGHLFLPSYVMRTHGARQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDR 516
Query: 532 IWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
IW+ GGR+ADLVDR+DVPLP+KP T+DE +++KW+WK ++++KENRER+SQRCDIELKL+
Sbjct: 517 IWASGGRIADLVDRDDVPLPDKPVTDDEEKIKKWKWKCKSLQKENRERYSQRCDIELKLA 576
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
VARKMKDEEGFYYPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSGL WLKI
Sbjct: 577 VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRFLGKSGLQWLKI 636
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
HLANLYAGGVDKLSHEGRL FTENH +DIFDSADKPL+GRRWWLKAEDP QCLAVCI LT
Sbjct: 637 HLANLYAGGVDKLSHEGRLVFTENHFEDIFDSADKPLQGRRWWLKAEDPLQCLAVCITLT 696
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAAR
Sbjct: 697 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAAR 756
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V I+QRDAQ+DPA+FPDAL A+ L++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKE
Sbjct: 757 VSNIMQRDAQKDPAIFPDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKE 816
Query: 832 RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLG 891
R A ++ ELFGASCYAAKVTLTAL EMFQ ARGIM+WLG+CAK+IASENQPVRWTTPLG
Sbjct: 817 RNAISDDTELFGASCYAAKVTLTALEEMFQGARGIMNWLGDCAKVIASENQPVRWTTPLG 876
Query: 892 LPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 951
LPVVQPYRKLG+H +KTSLQ+LTLQRET+KVMV RQRTAFPPNFVHSLDGSHMMMTAVAC
Sbjct: 877 LPVVQPYRKLGKHIIKTSLQMLTLQRETDKVMVTRQRTAFPPNFVHSLDGSHMMMTAVAC 936
Query: 952 RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPL 1011
+K GL FAGVHDSYWTHACDVD+MNRILREKFVELYE P+ ENLL+SFQ SFP L FP L
Sbjct: 937 KKEGLNFAGVHDSYWTHACDVDKMNRILREKFVELYETPVLENLLESFQSSFPSLSFPSL 996
Query: 1012 PERGDFDLREVLGSPYFFN 1030
PERGDFDLREVL SPYFFN
Sbjct: 997 PERGDFDLREVLESPYFFN 1015
>gi|308026305|emb|CBL87031.1| RNA polymerase [Nuphar advena]
Length = 990
Score = 1401 bits (3626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/902 (74%), Positives = 768/902 (85%), Gaps = 14/902 (1%)
Query: 130 RGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARG-MGSGK 188
+G+A+VAEAVSSTD ED S +EEI+ L++ +E +E E G R +RR G +G K
Sbjct: 102 QGFASVAEAVSSTD--EDTSAIEEIKGLVERFSEEVFKEKE-GEFRGKRRTKFGNLGYAK 158
Query: 189 YRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE 248
Y LK RQ+KIETEAWE+AA EY+EL+MDMC+ KLA NLPY+KSLFLGWFEPLRD IA E
Sbjct: 159 YNALKRRQIKIETEAWEQAAKEYKELMMDMCKNKLAXNLPYIKSLFLGWFEPLRDRIASE 218
Query: 249 QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIE 308
QE CR K + AY PY ++LPA+MMAVITMHKL+GL+MT G+HG ARVVQAAC IGDAIE
Sbjct: 219 QEACRRGKCRAAYGPYLNRLPAEMMAVITMHKLVGLMMTSGDHGCARVVQAACRIGDAIE 278
Query: 309 QEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK 368
E RIH FLEKTKKK+ N +EE + TVT E+E LRKKVT+LIKKQKL V ++VK
Sbjct: 279 NESRIHSFLEKTKKKHARGNMAEEEPE---TVTKEKEFLRKKVTNLIKKQKLRQVTKLVK 335
Query: 369 GQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETK 428
G+DD PWG +A AKVG +IELL +TAYIQ P DQ D PPDI PAF H+LR VSKE
Sbjct: 336 GKDDSAPWGVEAHAKVGCHLIELLIETAYIQPPLDQTVDGPPDIRPAFRHSLRNVSKEQS 395
Query: 429 GGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHG 488
S++YGVIEC+PLV KGL++TARH VIPYMPMLVPP+ WTGYDKGAH FLPSY+MRTHG
Sbjct: 396 SNSRRYGVIECDPLVRKGLDKTARHTVIPYMPMLVPPLCWTGYDKGAHLFLPSYIMRTHG 455
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV 548
++QQR+ VKRTP +QL+ +FEALDTLG+TKWR+N R+L+V++RIW+ GG LA LVD D
Sbjct: 456 SRQQREAVKRTPTQQLQSIFEALDTLGSTKWRINKRLLAVVERIWASGGNLAGLVDCEDA 515
Query: 549 PLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
PLPEKP+TEDEA LRKW+W +RN KKEN E+HSQRCD+ELKLSVARKMK+EEGFYYPHN+
Sbjct: 516 PLPEKPDTEDEAVLRKWKWSLRNTKKENSEKHSQRCDVELKLSVARKMKEEEGFYYPHNL 575
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLKIHLANLYAGGVDKLS++G
Sbjct: 576 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDG 635
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
RLAF ENHLDDIFDSADKPLEG RWWL AEDPFQCLA CINL+EALRSSSP+T ISH+PV
Sbjct: 636 RLAFVENHLDDIFDSADKPLEGSRWWLGAEDPFQCLAACINLSEALRSSSPDTTISHVPV 695
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
HQDGSCNGLQHYAALGRD LGAA+VNLVA EKPADVYSGIA+ VL I++RD+Q+DPA P
Sbjct: 696 HQDGSCNGLQHYAALGRDKLGAASVNLVAGEKPADVYSGIASGVLEIMRRDSQKDPANNP 755
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYA 848
A+RA+LL+ QVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER + E ++FGA+CYA
Sbjct: 756 SAVRARLLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERDV-IPEDQVFGAACYA 814
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT 908
AK TL AL EMFQAARGIMSWLG+CAK+IASEN+ VRWTTPLGLPVVQPY+K GR V
Sbjct: 815 AKTTLAALEEMFQAARGIMSWLGDCAKVIASENESVRWTTPLGLPVVQPYKKQGRCLV-- 872
Query: 909 SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
L LQ+ET+KVM+KRQRTAFPPNFVHSLDGSHMMMTA+AC+K GL FAGVHDSYWTH
Sbjct: 873 ----LALQKETDKVMIKRQRTAFPPNFVHSLDGSHMMMTAIACKKIGLNFAGVHDSYWTH 928
Query: 969 ACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYF 1028
ACDVDEMNRILR+KFVELYE PI ENLL+S+QKSFPKL FPPLP+RGDFDL+EVL SPYF
Sbjct: 929 ACDVDEMNRILRKKFVELYEQPILENLLESYQKSFPKLSFPPLPDRGDFDLKEVLKSPYF 988
Query: 1029 FN 1030
F
Sbjct: 989 FQ 990
>gi|90657592|gb|ABD96891.1| hypothetical protein [Cleome spinosa]
Length = 1021
Score = 1399 bits (3621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/1019 (68%), Positives = 810/1019 (79%), Gaps = 61/1019 (5%)
Query: 15 FDHL-PVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISLHLKKPFS-----RAY 68
FDHL P+ +KP I +P SS MWRN+AKQ IS + P ++
Sbjct: 17 FDHLVPL----------DKPLISSRNPVVQSSAMWRNIAKQTIS---RSPVRLSVCRQSR 63
Query: 69 SFLGISQDSILRDKVKF---VCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVLKND- 124
LG S +SI + F V + G H++G R EI D+ GR FG LK++
Sbjct: 64 GLLGFSSESIFPEIFIFRPSVIGPISSSGFHDMGYSRTCEIPAPGDFSGRPGFGFLKDEC 123
Query: 125 --NFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVAR 182
+ + PR Y AEAVSSTD+EED S+V+E+QELL+EMKKEE++E + R +R+
Sbjct: 124 CFHRFSPRSYVNAAEAVSSTDIEEDASVVDEVQELLREMKKEEKKEKVHLR-RVKRQEDL 182
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
GM KY+ LK RQVKIETEAWEKAANEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 183 GMLEKKYQSLKRRQVKIETEAWEKAANEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLR 242
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
+AIAK+QE R+ K++ YA Y DQLPADM+AVITMHKLMGLLMTGG++G +V+ AAC
Sbjct: 243 EAIAKDQELYRLGKNRANYAYYIDQLPADMIAVITMHKLMGLLMTGGDNGCVKVIMAACT 302
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
+GDAIEQE+RI +FLEKTKKK E + E E E T E++ L++KV++LIKKQKLPA
Sbjct: 303 VGDAIEQEIRICRFLEKTKKKKENIS-EGVENVEKETTVKEEDWLKRKVSELIKKQKLPA 361
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR+I+ D KPW D RAKVGSR+IEL +TAYIQ P +Q D PPDI PAF H +T
Sbjct: 362 VRQILNSHDASKPWSTDVRAKVGSRLIELFMKTAYIQPPTNQRGDDPPDIRPAFVHTFKT 421
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
V K G ++YGVIEC+PLV KGLE+T HMV+PYMPMLVPPV W+GYD+GA+FFLPSY
Sbjct: 422 VKNSKKSG-RRYGVIECDPLVRKGLEKTGWHMVMPYMPMLVPPVNWSGYDRGAYFFLPSY 480
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+MR HGAKQQR+ +K TP+KQL+ VFEALDTLGN KWRVN RVLS++DRIW+ GGRLADL
Sbjct: 481 LMRIHGAKQQREALKSTPRKQLQLVFEALDTLGNAKWRVNKRVLSIVDRIWNSGGRLADL 540
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR+DVPLPEKP+TEDE L+KW+WKV++ KENRERHSQRCDIELKL+VARKMKDEEGF
Sbjct: 541 VDRSDVPLPEKPDTEDENILKKWKWKVKSANKENRERHSQRCDIELKLNVARKMKDEEGF 600
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHP+LNHLGSDLCRG+LEFAEG+ LG SGL WLKIHLANLYAGGVD
Sbjct: 601 YYPHNIDFRGRAYPMHPHLNHLGSDLCRGVLEFAEGKPLGSSGLRWLKIHLANLYAGGVD 660
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS EGRLAFTENHLDDIF+SAD+PLEGRRWWL+AEDPFQCLAVCIN+TEALRS PETF
Sbjct: 661 KLSFEGRLAFTENHLDDIFNSADRPLEGRRWWLQAEDPFQCLAVCINITEALRSPCPETF 720
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
+SHIP+HQ LGAAAVNLVA EKPADVYSGIAARVL I++RDA++
Sbjct: 721 VSHIPIHQ-----------------LGAAAVNLVAGEKPADVYSGIAARVLDIMRRDAEQ 763
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP VFPDALRA+ L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER ++ ELF
Sbjct: 764 DPEVFPDALRARNLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSIFTDDTELF 823
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
GA+CYAAKVTLTALGEMFQAAR IMSWLGECAKIIAS+NQPVRWTTPLGLPVVQPYRK+G
Sbjct: 824 GAACYAAKVTLTALGEMFQAARDIMSWLGECAKIIASQNQPVRWTTPLGLPVVQPYRKMG 883
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RHT VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG+ FAGVH
Sbjct: 884 RHT----------------VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGICFAGVH 927
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLRE 1021
DSYWTHACDVDE+NR LREKFVELY+ PI E+LL+SF+KSFP L FPPLPERGDFDLRE
Sbjct: 928 DSYWTHACDVDELNRTLREKFVELYDKPILEDLLESFEKSFPHLSFPPLPERGDFDLRE 986
>gi|242046328|ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 1397 bits (3617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/848 (77%), Positives = 750/848 (88%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
GM +Y L+ RQ+++ETEAWE+AA EYRELL DMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLR 188
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D I EQE + ++ PYF+ LPADMMAVITMHKLMGLLMTG G RV+QAAC
Sbjct: 189 DQIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG+AIE EVRI++FLEKT+KK+ + +++EE + EQ++LRKKVTDL+KKQKL
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQ 308
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR IVK QD+ +PWGQD +AKVGSR+IEL TA+IQ PA Q +D PDI PAF H +RT
Sbjct: 309 VRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRT 368
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
V+KE + S++YGVI+C+PLV +GL+RTA+HMVIPYMPML+PP+ WTGYDKGAH FLPSY
Sbjct: 369 VAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSY 428
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMRTHGA+QQR+ VKR P++Q++ VFEAL+TLG+TKWRVN RVLS++DRIWS GGRLADL
Sbjct: 429 VMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADL 488
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR DVPLPEKP+TEDE ++ W+W +R+VKKEN ERHSQRCD+ELKL+VARKMKDEEGF
Sbjct: 489 VDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEGF 548
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGLHWLKIHLANLYAGGVD
Sbjct: 549 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVD 608
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS++GR+AFTENHL++IFDSAD+PLEG+RWWL AEDPFQCLAVC+NLTEALRSSSPET
Sbjct: 609 KLSYDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSPETT 668
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLVA EKPADVY+GIA RVL I++ DAQ+
Sbjct: 669 ISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQK 728
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP++ PD RA+L++ QVDRKLVKQTVMTSVYGVTY+GARDQIKRRLKERG +EAELF
Sbjct: 729 DPSIDPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGVIPDEAELF 788
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
GASCYAAKVTLTALGEMFQAARGIM+WLG+CAK+IA EN+PVRWTTPLGLPVVQPYRKLG
Sbjct: 789 GASCYAAKVTLTALGEMFQAARGIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 848
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVH
Sbjct: 849 RHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVH 908
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVD MN+ILREKFVELY+ PI ENLL+SF+KSFPKL FPPLPERGDFD++EV
Sbjct: 909 DSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKEV 968
Query: 1023 LGSPYFFN 1030
L SPYFFN
Sbjct: 969 LESPYFFN 976
>gi|224099265|ref|XP_002311418.1| predicted protein [Populus trichocarpa]
gi|222851238|gb|EEE88785.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 1394 bits (3607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/859 (76%), Positives = 745/859 (86%), Gaps = 7/859 (0%)
Query: 178 RRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGW 237
+++ GMG GKY +LK RQ+K+ETEAWE+AA EY+E+L DMCEQKLAPNLPY+KSLFLGW
Sbjct: 20 KKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGW 79
Query: 238 FEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG-GEHGRARV 296
FEPLRDAI EQE C+ +V++ +F LPADMMAVITMHKLMGLLMTG G RV
Sbjct: 80 FEPLRDAIVAEQELCKR-NLRVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIRV 138
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNK-----EDEEGDESNTVTTEQEKLRKKV 351
VQAA ++G+AIE E RIHKFLEKTKK+ + K D +E ++ EQEKLRKKV
Sbjct: 139 VQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKLRKKV 198
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
T LIKKQK+ VRRIVKG DD +PWGQ+ KVGSR+I+L+ +TAYIQ P DQ+ D PPD
Sbjct: 199 TTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGPPD 258
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGY 471
I PAF H L+T++K+T+ S++YGVIEC+PLV KGLE++ARHMVIPYMPMLVPP+ WTGY
Sbjct: 259 IRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGY 318
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
D+GAH FLPSYVMR HG+KQQRD VKR + QLEPVF+ALDTLGNTKWR+N RVL V+DR
Sbjct: 319 DQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVVVDR 378
Query: 532 IWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
IW+ GG LA LVDR D PLPE+P+TEDEA++RKW WKVR+VKKEN ERHSQRCDIELKL+
Sbjct: 379 IWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSERHSQRCDIELKLA 438
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
VARKMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSD+CRGILEFAEGR LGKSGL WLKI
Sbjct: 439 VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKI 498
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
HLANLYAGGVDKLS++GR++FTENHLDDIFDSAD+PLEGRRWWL AEDPFQCLA CINL+
Sbjct: 499 HLANLYAGGVDKLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAEDPFQCLAACINLS 558
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
EALRS SPET SH PVHQDGSCNGLQHYAALGRD LGAAAVNLV EKPADVYSGIA R
Sbjct: 559 EALRSPSPETATSHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIATR 618
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
VL I+QRDA++DPA+ P+++ AKLL++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE
Sbjct: 619 VLDIMQRDAEKDPAINPNSVHAKLLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 678
Query: 832 RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLG 891
R ++ +L+ A+CYAAK TL AL EMF+ ARGIM+WLGECAK+IASENQPVRWTTPLG
Sbjct: 679 RCIIADDPQLYSAACYAAKTTLMALEEMFEGARGIMAWLGECAKVIASENQPVRWTTPLG 738
Query: 892 LPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 951
LPVVQPYR+LGRH +KTSLQ+LTL+RET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC
Sbjct: 739 LPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 798
Query: 952 RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPL 1011
++AGL FAGVHDSYWTHACDVDEMNRILREKFVELYE PI ENLL+SFQ SFP L FPPL
Sbjct: 799 KEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQSSFPNLKFPPL 858
Query: 1012 PERGDFDLREVLGSPYFFN 1030
PERG FDL++VL S YFFN
Sbjct: 859 PERGVFDLKDVLRSTYFFN 877
>gi|224111836|ref|XP_002315996.1| predicted protein [Populus trichocarpa]
gi|222865036|gb|EEF02167.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 1392 bits (3603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/853 (76%), Positives = 743/853 (87%), Gaps = 7/853 (0%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG GKY +LK RQVK+ETEAWE+ A EY+E+L DMCEQKLAPNLPY+KSLFLGWFEPLRD
Sbjct: 1 MGIGKYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRD 60
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG-GEHGRARVVQAACI 302
AI EQE C++ +V + YF+ LPADMMAVITMHKLMGLLMTG G RVVQAA +
Sbjct: 61 AILAEQELCKV-NSRVPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTASIRVVQAASV 119
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD-----ESNTVTTEQEKLRKKVTDLIKK 357
+G+AIE E +IHKFLEKTKK+ K K E E +T EQEKLRKKVT L+KK
Sbjct: 120 VGEAIENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKKVTTLMKK 179
Query: 358 QKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFT 417
QK+ VRRIVKG DD PWGQ+A KVGSR+I+L+ +TAYIQ P DQ+ D PPDI PAF
Sbjct: 180 QKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFV 239
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHF 477
H L+T++K+T+ S++YGVIEC+PLV KGLE++ARHMVIPYMPMLVPP+ WTGYD+GA+F
Sbjct: 240 HTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAYF 299
Query: 478 FLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
FLPSYVMR HGAKQQR +KR + QLEPVF+ALDTLGNTKWRVN R+L V+DRIW+ GG
Sbjct: 300 FLPSYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVNKRILGVIDRIWASGG 359
Query: 538 RLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMK 597
LA LVDR DVPLPE+P+TEDEA++RKW+WKV++VKKEN ERHSQRCD+ELKL+VARKMK
Sbjct: 360 HLAGLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKENSERHSQRCDVELKLAVARKMK 419
Query: 598 DEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY 657
DEEGFYYPHNVDFRGRAYPMHPYLNHLGSD+CRGILEFAEGR LGKSGL WLKIHLANLY
Sbjct: 420 DEEGFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLY 479
Query: 658 AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSS 717
AGGVDKLS++GR++FTENHLDDIFDSAD+PLEG+RWWL AEDPFQCLAVCINL+EALRS
Sbjct: 480 AGGVDKLSYDGRISFTENHLDDIFDSADRPLEGQRWWLGAEDPFQCLAVCINLSEALRSP 539
Query: 718 SPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQ 777
SPET ISH PVHQDGSCNGLQHYAALGRD LGAAAVNLV KPADVYSGIAARVL I++
Sbjct: 540 SPETAISHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGGKPADVYSGIAARVLDIMR 599
Query: 778 RDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPME 837
RDA+ DPA+ P+++ AKLL++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER +
Sbjct: 600 RDAENDPAINPNSVHAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCNIAD 659
Query: 838 EAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQP 897
+ +L+ A+CYAAK TLTAL EMF+ ARGIM+WLGECAK+IASENQPV+WTTP GLPVVQP
Sbjct: 660 DPQLYSAACYAAKTTLTALEEMFEGARGIMAWLGECAKVIASENQPVQWTTPFGLPVVQP 719
Query: 898 YRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
YR+LGR +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++AGL
Sbjct: 720 YRQLGRQLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLN 779
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDF 1017
FAGVHDSYWTHACDVDEMNRILREKFVELYE PI ENLL+SFQ SFP L FPPLPERGDF
Sbjct: 780 FAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFQSSFPNLKFPPLPERGDF 839
Query: 1018 DLREVLGSPYFFN 1030
DLR+VL S YFFN
Sbjct: 840 DLRDVLQSTYFFN 852
>gi|34925359|sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1392 bits (3603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 710/1015 (69%), Positives = 819/1015 (80%), Gaps = 44/1015 (4%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVK-FVCLDMVPRGIHEVG------ 99
MWR ++KQA S + S + LG SQ S K + CL +G
Sbjct: 1 MWRYISKQAYSRKFRN--SHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSI 58
Query: 100 SGRIGEILNHEDYMGRTS-------------FGVLKNDNFWCP----------RGYATVA 136
RI + H + + S F +K D C R Y + A
Sbjct: 59 FSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSAA 118
Query: 137 EAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQ 196
EA++ST EED+ +EIQEL++EM KE + N + + + GMG GKY +L+ RQ
Sbjct: 119 EAIASTS-EEDI---DEIQELIEEMNKENEALKTNLQPKQPKTIG-GMGVGKYNLLRRRQ 173
Query: 197 VKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAK 256
+K+ETEAWE+AA EY+ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA EQ+ C K
Sbjct: 174 IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233
Query: 257 HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKF 316
++ AYAP+FDQLPA+MMAVITMHKLMGLLMTGG G ARVVQAA IG+AIE E RIH+F
Sbjct: 234 NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293
Query: 317 LEKTKKKNE-TKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
LEKTKK N + + ED GD + E+E++RKKV L+KKQKL VR+IVK QDD KP
Sbjct: 294 LEKTKKSNALSGDLEDTPGD----IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKP 349
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
WGQD KVG R+I++L +TAYIQ P DQL D PPDI PAF H L+TV ET GS++YG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYG 407
Query: 436 VIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDT 495
VI+C+PLV KGL++TARHMVIPYMPMLVPP W GYDKGA+ FLPSY+MRTHGAKQQR+
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREA 467
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE 555
VKR PKKQLEPVF+ALDTLGNTKWR+N +VL ++DRIW+ GGRLADLVDR DVPLPE+P+
Sbjct: 468 VKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPD 527
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
EDEAQ+RKW+WKV+ VKKEN ERHSQRCDIELKL+VARKMKDE+GFYYPHN+DFRGRAY
Sbjct: 528 AEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAY 587
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
PMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLKIHLAN+Y GGVDKLS+EGR+AF+EN
Sbjct: 588 PMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSEN 647
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCN 735
H++DIFDSA++PLEG+RWWL AEDPFQCLA CIN+ EALRS SPET IS++P+HQDGSCN
Sbjct: 648 HVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCN 707
Query: 736 GLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKL 795
GLQHYAALGRDTLGAAAVNLVA +KPADVYSGIAARVL I++RDA +DPA P+ +RA+L
Sbjct: 708 GLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARL 767
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTA 855
L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG ++ ELF A+CYAAK TLTA
Sbjct: 768 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTA 827
Query: 856 LGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
LGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPLGLPVVQPYRKLGRH +KTSLQILTL
Sbjct: 828 LGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTL 887
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
QRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+++GL+FAGVHDSYWTHA DVD+M
Sbjct: 888 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQM 947
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
N+ILREKFVELY+ PI ENLL+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 948 NKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>gi|21425663|emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1391 bits (3600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/918 (75%), Positives = 788/918 (85%), Gaps = 20/918 (2%)
Query: 114 GRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGS 173
G S G L R Y + AEA++ST EED+ +EIQEL++EM KE + N
Sbjct: 104 GSGSLGFL--------RSYGSAAEAIASTS-EEDI---DEIQELIEEMNKENEALKTNLQ 151
Query: 174 GRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL 233
+ + + GMG GKY +L+ RQ+K+ETEAWE+AA EY+ELLMDMCEQKLAPNLPYMKSL
Sbjct: 152 PKQPKTIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSL 210
Query: 234 FLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
FLGWFEPLRDAIA EQ+ C K++ AYAP+FDQLPA+MMAVITMHKLMGLLMTGG G
Sbjct: 211 FLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGS 270
Query: 294 ARVVQAACIIGDAIEQEVRIHKFLEKTKKKNE-TKNKEDEEGDESNTVTTEQEKLRKKVT 352
ARVVQAA IG+AIE E RIH+FLEKTKK N + + ED GD + E+E+LRKKV
Sbjct: 271 ARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGD----IMKERERLRKKVK 326
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
L+KKQKL VR+IVK QDD KPWGQD KVG R+I++L +TAYIQ P DQL D PPDI
Sbjct: 327 ILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDI 386
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
PAF H L+TV ET GS++YGVI+C+PLV KGL++TARHMVIPYMPMLVPP W GYD
Sbjct: 387 RPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYD 444
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
KGA+ FLPSY+MRTHGAKQQR+ VKR PKKQLEPVF+ALDTLGNTKWR+N +VL ++DRI
Sbjct: 445 KGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRI 504
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
W+ GGRLADLVDR DVPLPE+P+ EDEAQ+RKW+WKV+ VKKEN ERHSQRCDIELKL+V
Sbjct: 505 WASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAV 564
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
ARKMKDE+GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLKIH
Sbjct: 565 ARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIH 624
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LAN+Y GGVDKLS+EGR+AF+ENH++DIFDSA++PLEG+RWWL AEDPFQCLA CIN+ E
Sbjct: 625 LANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAE 684
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
ALRS SPET IS++P+HQDGSCNGLQHYAALGRDTLGAAAVNLVA +KPADVYSGIAARV
Sbjct: 685 ALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARV 744
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
L I++RDA +DPA P+ +RA+LL++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 745 LDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 804
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
G ++ ELF A+CYAAK TLTALGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPLGL
Sbjct: 805 GVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGL 864
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
PVVQPYRKLGRH +KTSLQILTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+
Sbjct: 865 PVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK 924
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLP 1012
++GL+FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PI ENLL+SFQ+SFP L FPPLP
Sbjct: 925 ESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLP 984
Query: 1013 ERGDFDLREVLGSPYFFN 1030
ERGDFDLREVL SPYFFN
Sbjct: 985 ERGDFDLREVLESPYFFN 1002
>gi|308026128|emb|CBL69149.1| RNA polymerase [Nuphar advena]
Length = 996
Score = 1390 bits (3597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/936 (72%), Positives = 770/936 (82%), Gaps = 12/936 (1%)
Query: 99 GSGRIGEILNHEDYMGRTSFGVLKNDNFWC----PRGYATVAEAVSSTDVEEDVSIVEEI 154
G G G L + SF N +F C +G A VAEAV+STD EDVS +EEI
Sbjct: 69 GLGDRGVGLYRRSIEDQASFLRFMNASFRCRVGSVQGLANVAEAVASTD--EDVSAIEEI 126
Query: 155 QELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYREL 214
Q LL+E+ +E R+ + +G GKY+ K RQ+KIETEAWE+AA EYREL
Sbjct: 127 QGLLEELSEEVARQKTGEFDAKNKPNFGDLGFGKYKAQKRRQIKIETEAWEQAAREYREL 186
Query: 215 LMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMA 274
+DMC+QKLAPNLPYMKSLFLGWFEPLRD IA EQE R K + AYA Y D LPADM+A
Sbjct: 187 FVDMCKQKLAPNLPYMKSLFLGWFEPLRDRIAAEQESYRKGKSRAAYARYIDHLPADMVA 246
Query: 275 VITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEG 334
VITMHKLMGL+MT ++G ARVVQAAC IG+AIE E RIH+FLEKTKKK NK + E
Sbjct: 247 VITMHKLMGLMMTSNDNGCARVVQAACQIGEAIENEARIHRFLEKTKKKPANANKAEAEP 306
Query: 335 DESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQ 394
+ VT E+E LRKKVT LIKKQKL V +IVKG+DD +PWG + AKVG R+IELL +
Sbjct: 307 E---AVTKEKEFLRKKVTSLIKKQKLRQVTKIVKGKDDSEPWGTEGHAKVGCRLIELLMK 363
Query: 395 TAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHM 454
I +P DQ AD AF H+LR+ S + S++YGVIEC+PLV KGL+RTARHM
Sbjct: 364 P-LISAPLDQTADGHL-YSSAFRHSLRSPSNHQQNNSRRYGVIECDPLVRKGLDRTARHM 421
Query: 455 VIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
VIPYMPMLVPP+ WTGYDKGAH FLPSYVMRTHGA+QQR+ VK P+KQL+ VFEALDTL
Sbjct: 422 VIPYMPMLVPPLGWTGYDKGAHLFLPSYVMRTHGARQQREAVKSAPRKQLQSVFEALDTL 481
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKK 574
G+TKWRVN RVL+V+DRIW+ GG LA LVD DVPLPEKP+TEDEA LRKW+W +RN +K
Sbjct: 482 GSTKWRVNKRVLAVVDRIWASGGHLAGLVDCQDVPLPEKPDTEDEAVLRKWKWSLRNARK 541
Query: 575 ENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILE 634
EN ER+SQRCD+ELKL+VARKMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LE
Sbjct: 542 ENSERYSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 601
Query: 635 FAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWW 694
FAEGR LGKSGLHWLKIH+ANLYAGG+DKLS++GRLAF ENHLDDIFDS+D+PLEG RWW
Sbjct: 602 FAEGRPLGKSGLHWLKIHVANLYAGGIDKLSYDGRLAFVENHLDDIFDSSDRPLEGSRWW 661
Query: 695 LKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVN 754
L AEDPFQCLA CINL++ALRSSSPET ISH+P+HQDGSCNGLQHYAALGRD LGAAAVN
Sbjct: 662 LGAEDPFQCLAACINLSDALRSSSPETTISHVPIHQDGSCNGLQHYAALGRDKLGAAAVN 721
Query: 755 LVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVY 814
LVA EKPADVYSGIA RV I++RD+Q+DP P A RA+LL+ QVDRKLVKQTVMTSVY
Sbjct: 722 LVAGEKPADVYSGIAERVFDIMRRDSQKDPTNNPSAARARLLIDQVDRKLVKQTVMTSVY 781
Query: 815 GVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
GVTYIGARDQIKRRLKER A + + ++FGA+CYAAK TLTAL EMFQAAR IMSWLG+CA
Sbjct: 782 GVTYIGARDQIKRRLKERDA-IPDDQVFGAACYAAKTTLTALEEMFQAARAIMSWLGDCA 840
Query: 875 KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPN 934
K+IASEN+PVRWTTPLGLPVVQPY+K GR VKTSLQ+L L+RET+KVM+KRQRTAFPPN
Sbjct: 841 KVIASENEPVRWTTPLGLPVVQPYKKKGRCLVKTSLQVLALKRETDKVMIKRQRTAFPPN 900
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
FVHSLDGSHMMMTAVAC+KAGL FAGVHDSYWTHACDVDE+NRILREKFVELYE PI EN
Sbjct: 901 FVHSLDGSHMMMTAVACKKAGLKFAGVHDSYWTHACDVDEINRILREKFVELYEQPILEN 960
Query: 995 LLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
LL+ FQKSFPK FPPLP+RGDFDL+EVL S YFFN
Sbjct: 961 LLEGFQKSFPKFSFPPLPDRGDFDLKEVLQSTYFFN 996
>gi|357155565|ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 1389 bits (3595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/869 (75%), Positives = 757/869 (87%), Gaps = 4/869 (0%)
Query: 165 EQREGENGSGRNRRRV---ARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQ 221
++R+G + SGR R+ A GMGS KY L+ RQV+IETEAWE+AA EYRELL DMCE
Sbjct: 125 KERKGRSRSGRGRQATEAAAHGMGSSKYAALRQRQVRIETEAWEQAAKEYRELLADMCEH 184
Query: 222 KLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
KLAPNLPY+KSLFLGWFEPLRD I EQE + ++APYF+ LPADMMAVITMHKL
Sbjct: 185 KLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHAPYFNMLPADMMAVITMHKL 244
Query: 282 MGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVT 341
MGLLMTG G RV+QAAC IG+AIE EVRIHKFLEKTKKKN + E +S+ +
Sbjct: 245 MGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSD-IA 303
Query: 342 TEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSP 401
EQ++LRKKVTDL+KKQK+ VR IVK QD +PWGQDA AKVGSR+IELL +TA+IQ P
Sbjct: 304 KEQQRLRKKVTDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPP 363
Query: 402 ADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPM 461
Q AD+ PDI PAFTH +RTV++E + S++YGVI+C+PL+ +GL+RTA+HMVIPYMPM
Sbjct: 364 VSQSADSTPDIRPAFTHEMRTVTREQQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPM 423
Query: 462 LVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRV 521
L+PP+ WTGYDKGAH FLPSYVMRTHGA+QQR+ VK+ PK+Q++ +FEALDTLG+TKWR+
Sbjct: 424 LIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQLIFEALDTLGSTKWRI 483
Query: 522 NNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHS 581
N +VLS++DRIWS GGRLADLVDR DV LPEKP+TEDE +L+KW+W +R+VKKEN ERHS
Sbjct: 484 NKKVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDETELKKWRWNLRSVKKENSERHS 543
Query: 582 QRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL 641
QRCD+ELKL+VARKMKDE GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LEF+EGR L
Sbjct: 544 QRCDVELKLAVARKMKDEVGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPL 603
Query: 642 GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPF 701
G SGL WLKIHLANLYAGGVDKLS++GR+AFTENHL+DIFDSA++PLEG+RWWL AEDPF
Sbjct: 604 GDSGLCWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSANRPLEGKRWWLGAEDPF 663
Query: 702 QCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKP 761
QCLAVC++LTEALRSSSPE ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLV+ EKP
Sbjct: 664 QCLAVCMDLTEALRSSSPEAMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVSGEKP 723
Query: 762 ADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGA 821
ADVYSGIA RV+ I++RDAQ+DPA+ PDA RA+LL+ QVDRKLVKQTVMTSVYGVTY+GA
Sbjct: 724 ADVYSGIATRVVEIMRRDAQKDPALDPDAARARLLVDQVDRKLVKQTVMTSVYGVTYVGA 783
Query: 822 RDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
R+QIKRRLKERG +++ELF ASCYAAKVTLTALGEMF+AAR IM+WLG+CAK+IA EN
Sbjct: 784 REQIKRRLKERGVIGDDSELFAASCYAAKVTLTALGEMFEAARSIMNWLGDCAKVIACEN 843
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDG 941
+PVRW TPLGLPVVQPYRKLGRH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDG
Sbjct: 844 EPVRWMTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDG 903
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
SHMMMTAVAC K GL FAGVHDSYWTHACDVD MN+ILREKFVELY+ PI ENLLDSF+
Sbjct: 904 SHMMMTAVACNKQGLYFAGVHDSYWTHACDVDTMNKILREKFVELYDAPILENLLDSFET 963
Query: 1002 SFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
SFP L FPPLPERGDFDL +VL SPYFFN
Sbjct: 964 SFPTLRFPPLPERGDFDLNDVLQSPYFFN 992
>gi|88933965|sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 1388 bits (3592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/980 (71%), Positives = 807/980 (82%), Gaps = 36/980 (3%)
Query: 65 SRAYSFLGISQDSI---LRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVL 121
S + LG+SQ+SI + KV+ + GI E S H ++F +
Sbjct: 45 STTHPNLGLSQNSIFSRISRKVRHL------EGICEESSKN-----PHLGLSQNSTFSSV 93
Query: 122 KNDNFWCP----------RGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGEN 171
K D C R Y + AEA+ ST EED+ +EIQEL++EM KE + N
Sbjct: 94 KGDFRICGKRGSGSLGRLRSYGSAAEAIVSTS-EEDI---DEIQELIEEMDKENEALKAN 149
Query: 172 GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMK 231
+ + + GMG GKY L+ RQ+K+ETEAWE+AA EY+ELLMDMCEQKLAPNLPYMK
Sbjct: 150 LQPKQPKTIG-GMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMK 208
Query: 232 SLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH 291
SLFLGWFEPLRDAIA EQ+ C K++ AYAP+FDQLPA+MMAVITMHKLMGLLMTGG
Sbjct: 209 SLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGT 268
Query: 292 GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNE-TKNKEDEEGDESNTVTTEQEKLRKK 350
G ARVVQAA IG+AIE E RIH+FLEKTKK N + + E+ GD + E+E+LRKK
Sbjct: 269 GSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGD----MMKERERLRKK 324
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
V L+KKQKL VR+IVK QDD KPWGQD KVG R+I++L +TAYIQ P DQL D PP
Sbjct: 325 VKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPP 384
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTG 470
DI PAF H L+TV ET GS++YGVI+C+PLV KGL++TARHMVIPYMPMLVPP W G
Sbjct: 385 DIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLG 442
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKG + FLPSY+MRTHGAKQQR+ VKR PKKQLEPVF+ALDTLGNTKWRVN +VL ++D
Sbjct: 443 YDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVD 502
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
RIW+ GGRLADLVDR DVPLPE P+TEDEA++RKW+WKV+ VKKEN ERHSQRCDIELKL
Sbjct: 503 RIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKL 562
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+VARKMKDE+GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LG SGL WLK
Sbjct: 563 AVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLK 622
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLAN+Y GGVDKLS+EGR+AF+ENHL+DIFDSA++PLEG+RWWL AEDPFQCLA CIN+
Sbjct: 623 IHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINI 682
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
EALRS SPET IS++P+HQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVYSGIAA
Sbjct: 683 AEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAA 742
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RVL I++RDA +DPA P+ +RA+LL++QVDRKLVKQTVMTSVYGVTYIGARDQIK+RLK
Sbjct: 743 RVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLK 802
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
ERG ++ ELF A+CYAAK TLTALGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPL
Sbjct: 803 ERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPL 862
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPVVQPYRKLGRH +KTSLQILTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+A
Sbjct: 863 GLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIA 922
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
C+++GL+FAGVHDSYWTHACDVD+MN+ILREKFVELY+ PI ENLL+SFQ+SFP L FPP
Sbjct: 923 CKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPP 982
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LPERGDFDLREVL SPYFFN
Sbjct: 983 LPERGDFDLREVLESPYFFN 1002
>gi|21425637|emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 1386 bits (3587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/980 (71%), Positives = 807/980 (82%), Gaps = 36/980 (3%)
Query: 65 SRAYSFLGISQDSI---LRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVL 121
S + LG+SQ+SI + KV+ + GI E S H ++F +
Sbjct: 45 STTHPNLGLSQNSIFSRISRKVRHL------EGICEESSKN-----PHLGLSQNSTFSSV 93
Query: 122 KNDNFWCP----------RGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGEN 171
K D C R Y + AEA+ ST EED+ +EIQEL++EM KE + N
Sbjct: 94 KGDFRICGKRGSGSLGRLRSYGSAAEAIVSTS-EEDI---DEIQELIEEMDKENEALKAN 149
Query: 172 GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMK 231
+ + + GMG GKY L+ RQ+K+ETEAWE+AA EY+ELLMDMCEQKLAPNLPYMK
Sbjct: 150 LQPKQPKTIG-GMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMK 208
Query: 232 SLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH 291
SLFLGWFEPLRDAIA EQ+ C K++ AYAP+FDQLPA+MMAVITMHKLMGLLMTGG
Sbjct: 209 SLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGT 268
Query: 292 GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNE-TKNKEDEEGDESNTVTTEQEKLRKK 350
G ARVVQAA IG+AIE E RIH+FLEKTKK N + + E+ GD + E+E+LRKK
Sbjct: 269 GSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGD----MMKERERLRKK 324
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
V L+KKQKL VR+IVK QDD KPWGQD KVG R+I++L +TAYIQ P DQL D PP
Sbjct: 325 VKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPP 384
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTG 470
DI PAF H L+TV ET GS++YGVI+C+PLV KGL++TARHMVIPYMPMLVPP W G
Sbjct: 385 DIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLG 442
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKG + FLPSY+MRTHGAKQQR+ VKR PKKQLEPVF+ALDTLGNTKWRVN +VL +++
Sbjct: 443 YDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVN 502
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
RIW+ GGRLADLVDR DVPLPE P+TEDEA++RKW+WKV+ VKKEN ERHSQRCDIELKL
Sbjct: 503 RIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKL 562
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+VARKMKDE+GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LG SGL WLK
Sbjct: 563 AVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLK 622
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLAN+Y GGVDKLS+EGR+AF+ENHL+DIFDSA++PLEG+RWWL AEDPFQCLA CIN+
Sbjct: 623 IHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINI 682
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
EALRS SPET IS++P+HQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVYSGIAA
Sbjct: 683 AEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAA 742
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RVL I++RDA +DPA P+ +RA+LL++QVDRKLVKQTVMTSVYGVTYIGARDQIK+RLK
Sbjct: 743 RVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLK 802
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
ERG ++ ELF A+CYAAK TLTALGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPL
Sbjct: 803 ERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPL 862
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPVVQPYRKLGRH +KTSLQILTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+A
Sbjct: 863 GLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIA 922
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
C+++GL+FAGVHDSYWTHACDVD+MN+ILREKFVELY+ PI ENLL+SFQ+SFP L FPP
Sbjct: 923 CKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPP 982
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LPERGDFDLREVL SPYFFN
Sbjct: 983 LPERGDFDLREVLESPYFFN 1002
>gi|414887624|tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
Length = 975
Score = 1372 bits (3551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/848 (76%), Positives = 743/848 (87%), Gaps = 1/848 (0%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
GM +Y L+ RQ++IETEAWE+AANEYRELL DMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLR 188
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D IA EQE + ++ P+F LPADMMAVITMHKLMGLLMTG G RV+QAAC
Sbjct: 189 DQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG+AIE EVRI++FLEKT+KKN + + +EE ++N + EQ++LRKKVTDL+KKQKL
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTN-IAIEQQRLRKKVTDLMKKQKLRQ 307
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR IVK QD +PWGQDA AKVGSR+I+L TA+IQ PA Q +D PDI PAF H +RT
Sbjct: 308 VRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRT 367
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
+ KE + S++YGVI+C+PLV +GL+RTA+HMVIPYMPML+PP+ WTGYDKGAH FLPSY
Sbjct: 368 MVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSY 427
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMRTHGA+QQRD VKR P++Q++ VFEAL+TLG+TKWRVN RVLS++DRIWS GGRLADL
Sbjct: 428 VMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADL 487
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR DVP+PEKP+TEDE L+ W+W +R KK+N ERHSQRCD+ELKL+VARKMKDEEGF
Sbjct: 488 VDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEGF 547
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LEFAEGR LGKSGL WLKIHLANLYA GVD
Sbjct: 548 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGVD 607
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS++GR+AF ENHL++IFDSAD+PLEGRRWWL AEDPFQCLAVC+NLTEALRSSSPET
Sbjct: 608 KLSYDGRIAFAENHLEEIFDSADRPLEGRRWWLGAEDPFQCLAVCMNLTEALRSSSPETT 667
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISHIPVHQDGSCNGLQHYAALG+D LGA AVNLVA EKPADVY+GIA RV+ I++ DAQ+
Sbjct: 668 ISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQK 727
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP+V PDA RA+L++ QVDRKLVKQTVMTSVYGVTYIGAR+QI+RRLKERG ++ELF
Sbjct: 728 DPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSELF 787
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
GASCYAAKVTLTALGEMFQAAR IM+WLG+CAK+IA EN+PVRWTTPLGLPVVQPYRKLG
Sbjct: 788 GASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 847
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVH
Sbjct: 848 RHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVH 907
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHA DVD MN+ILREKFVELY+ PI ENLL+SF+KSFPKL FPPLPERGDFD++EV
Sbjct: 908 DSYWTHASDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKEV 967
Query: 1023 LGSPYFFN 1030
L S YFFN
Sbjct: 968 LESTYFFN 975
>gi|297811707|ref|XP_002873737.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
gi|297319574|gb|EFH49996.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1009
Score = 1372 bits (3550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/1040 (66%), Positives = 814/1040 (78%), Gaps = 41/1040 (3%)
Query: 1 MSNNKTPIFFSANK--FDHL-PVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAI- 56
MS+ +TP+F + FDHL P+ +KP + P+P S MWRN+AKQAI
Sbjct: 1 MSSAQTPLFLANQTKVFDHLIPL----------HKPFLSSPNPVSQSFPMWRNIAKQAIL 50
Query: 57 -SLHLKKPFSRAYSFLGISQDS---ILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDY 112
S S+ FLG S +S R V F + P +E+G + I +++
Sbjct: 51 RSATRSNVGSKTRGFLGSSPESKNLSFRFPV-FGSISGSP--CYEMGFRSLSGITRRDEF 107
Query: 113 MG--RTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGE 170
R G L RGYA+VAE V STDVEE+ + E ++E+ +E K+E R
Sbjct: 108 SKSERCLNGTLA-------RGYASVAEEVLSTDVEEEPEVHELLKEMKKEKKRESHR--- 157
Query: 171 NGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYM 230
S R +++ GMG K++ L RQVKIETE WE+AA EY ELL DMCEQKLAPNLPY+
Sbjct: 158 --SWRMKKQEQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYV 215
Query: 231 KSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE 290
KSLFLGWFEPLRDAIAK+QE R+ K K YA Y DQLPAD ++VITMHKLMG LMTGG+
Sbjct: 216 KSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGD 275
Query: 291 HGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK 350
+G +VV AAC +GDAIEQE+RI FL+KT+KK +N+E E E+ T EQ+KLRKK
Sbjct: 276 NGCVKVVHAACTVGDAIEQEIRICTFLDKTRKKKGDENEESGEV-ENGTSMKEQDKLRKK 334
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
V +LIKKQKL AVR+I++ D KPW D RAKVGSR+IELL +TAYIQSPADQ + P
Sbjct: 335 VNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLP 394
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTG 470
D+ PAF H R + +KYGVIEC+PLV KGLE++ R+ VIPYMPMLVPP+KW+G
Sbjct: 395 DVRPAFVHTFRIAN-----SGRKYGVIECDPLVRKGLEKSGRYAVIPYMPMLVPPLKWSG 449
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKGA+ FL SY+M+THG+KQQR+ +K PK QL PVFEALDTLG+TKWRVN RVL+V+D
Sbjct: 450 YDKGAYLFLASYIMKTHGSKQQREALKSAPKGQLLPVFEALDTLGSTKWRVNKRVLTVVD 509
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
RIWS GG ADLVDR+DVPLPEKP+TEDE L+KW+W+V++ KK N ERHSQRCD ELKL
Sbjct: 510 RIWSSGGCTADLVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKL 569
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
SVARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRG+LEFAEGR LG SGL WLK
Sbjct: 570 SVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPLGISGLRWLK 629
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLANLYAGGVDKLS +GRLAFTENHL+DIFDSAD+PLEG RWWL+AEDPFQCLAVCINL
Sbjct: 630 IHLANLYAGGVDKLSLDGRLAFTENHLEDIFDSADRPLEGSRWWLQAEDPFQCLAVCINL 689
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
TEALRS SPET +SHIP+HQDGSCNGLQHYAALGRDTLGA AVNLVA EKPADVYSGIA
Sbjct: 690 TEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIAT 749
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RVL I++RDA RDP +PDALRA+ LL+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK
Sbjct: 750 RVLDIMRRDADRDPEAYPDALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 809
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
ER +E E+FGA+CYAAKVTL A+ EMFQAAR IM W G+CAKIIASEN+ VRWTTPL
Sbjct: 810 ERSDFGDEKEIFGAACYAAKVTLAAIDEMFQAARAIMRWFGDCAKIIASENETVRWTTPL 869
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPVVQPY ++G VKTSLQ L+LQ ET++V+V+RQRTAFPPNF+HSLDGSHMMMTAVA
Sbjct: 870 GLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVA 929
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
C++AG+ FAGVHDS+WTHACDVD++NRILREKFVELY PI ENLL+SF++SFP L FPP
Sbjct: 930 CKRAGVCFAGVHDSFWTHACDVDKLNRILREKFVELYSQPILENLLESFEQSFPHLEFPP 989
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LPERGD DL+ VL SPYFFN
Sbjct: 990 LPERGDLDLKVVLDSPYFFN 1009
>gi|162457737|ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA polymerase [Zea mays]
Length = 975
Score = 1366 bits (3535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/848 (76%), Positives = 742/848 (87%), Gaps = 1/848 (0%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
GM +Y L+ RQ++IETEAWE+AANEYRELL DMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLR 188
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D IA EQE + ++ P+F LPADMMAVITMHKLMGLLMTG G RV+QAAC
Sbjct: 189 DQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG+AIE EVRI++FLEKT+KKN + + +EE ++N + EQ++LRKKVTDL+KKQKL
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTN-IAVEQQRLRKKVTDLMKKQKLRQ 307
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR IVK QD +PWGQDA AKVGSR+I+L TA+IQ PA Q +D PDI PAF H +RT
Sbjct: 308 VRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRT 367
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
+ KE + S++YGVI+C+PLV +GL+RTA+HMVIPYMPML+PP+ WTGYDKGAH FLPSY
Sbjct: 368 MVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSY 427
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMRTHGA+QQRD VKR P++Q++ VFEAL+TLG+TKWRVN RVLS++DRIWS GGRLADL
Sbjct: 428 VMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADL 487
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR DVP+PEKP+TEDE L+ W+W +R KK+N ERHSQRCD+ELKL+VARKMKDEEGF
Sbjct: 488 VDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEGF 547
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LEFAEGR LGKSGL WLKIHLANLYA GVD
Sbjct: 548 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGVD 607
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS++GR+AF ENHL++IFDSAD+PLEGRRW L AEDPFQCLAVC+NLTEALRSSSPET
Sbjct: 608 KLSYDGRIAFAENHLEEIFDSADRPLEGRRWRLGAEDPFQCLAVCMNLTEALRSSSPETT 667
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISHIPVHQDGSCNGLQHYAALG+D LGA AVNLVA EKPADVY+GIA RV+ I++ DAQ+
Sbjct: 668 ISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQK 727
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP+V PDA RA+L++ QVDRKLVKQTVMTSVYGVTYIGAR+QI+RRLKERG ++ELF
Sbjct: 728 DPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSELF 787
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
GASCYAAKVTLTALGEMFQAAR IM+WLG+CAK+IA EN+PVRWTTPLGLPVVQPYRKLG
Sbjct: 788 GASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 847
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH +KTSLQ+LTLQRET+KVMVKRQ+TAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVH
Sbjct: 848 RHLIKTSLQVLTLQRETDKVMVKRQKTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVH 907
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHA DVD MN+ILREKFVELY+ PI ENLL+SF+KSFPKL FPPLPERGDFD++EV
Sbjct: 908 DSYWTHASDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKEV 967
Query: 1023 LGSPYFFN 1030
L S YFFN
Sbjct: 968 LESTYFFN 975
>gi|449482235|ref|XP_004156222.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 958
Score = 1364 bits (3531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/975 (69%), Positives = 784/975 (80%), Gaps = 30/975 (3%)
Query: 47 MWRNVAKQAISLHLK-----KPFSRAYSFLGISQDSILRDKV---KFVCLDMVPRGIHEV 98
MW+ +AK+ I + + + SR LG +S+ RDK+ FV + G E+
Sbjct: 1 MWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKFGSFEM 60
Query: 99 GSGRIGEILNHEDYM-GRTSFGVLKND---NFWCPRGYATVAEAVSSTDVEEDVSIVEEI 154
G GR EIL+ EDY R FG + N CP+GY++VAEAVSSTDV+ED S+ ++
Sbjct: 61 GVGR-SEILSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASVDGKV 119
Query: 155 QELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYREL 214
QE +QEM KEE+R + +GMG KY ML+ RQV IE EAWE AA EYREL
Sbjct: 120 QESVQEMSKEEKR----------LKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEYREL 169
Query: 215 LMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVA-YAPYFDQLPADMM 273
L+DMC+QKLAPNLPY+KSLFLGWFEP +DAI KEQE + K A YAPYF QLPAD M
Sbjct: 170 LVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPADKM 229
Query: 274 AVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEE 333
+VITMHKLMGLLM G EHG RVVQAAC IGDAIEQEVRIHKFLEK KK T NK++E
Sbjct: 230 SVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEK--KKERTHNKDNEN 287
Query: 334 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 393
D+ ++ EQE+LRKK L K+K A +I K DD +PWG++ +AKVG+R+IELL
Sbjct: 288 NDQPDSERKEQERLRKKXDQLDXKKKHLAAGQIAKRADDSRPWGRELKAKVGARLIELLI 347
Query: 394 QTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH 453
QTAYIQ PADQLAD PPD PAF H+L+T K+ + GVIEC+PLV+KGL+ TAR
Sbjct: 348 QTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGTNFMGRLGVIECDPLVVKGLDWTARQ 407
Query: 454 MVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDT 513
+VIPYMPML+PPVKW GYDKG H LPS+ MRTHGAKQQRD KRTPK+QL PVFEALDT
Sbjct: 408 IVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEALDT 467
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVK 573
LGNTKWR+N R+L+V++RIW+ GG LA LVD++DVPLPEKP+TEDE ++KW+W+VR+VK
Sbjct: 468 LGNTKWRINKRILNVVERIWTSGGHLAGLVDQDDVPLPEKPDTEDETLIKKWKWEVRSVK 527
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
KEN ERHSQRCDIELKL+VARKMKDEEGFYYPHNVDFRGRAYPMHP+LNHLGSDLCRGIL
Sbjct: 528 KENMERHSQRCDIELKLTVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGIL 587
Query: 634 EFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
EFAEGR+L KSGL WLKIHLANL+AGGVDKLSH+GR+ F ENHL+DIFDSAD+PLEG RW
Sbjct: 588 EFAEGRSLRKSGLIWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGGRW 647
Query: 694 WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
W+ AEDPFQ LA C+NLTEALRSSSPET+ISHIP+HQDGSCNGLQHYAALGRD GAAAV
Sbjct: 648 WMNAEDPFQFLAGCMNLTEALRSSSPETYISHIPIHQDGSCNGLQHYAALGRDKSGAAAV 707
Query: 754 NLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSV 813
NLVA EKPADVYSGIAARVL I++RDAQ+DP FPDAL AK+L+ QVDRKLVKQTVMTSV
Sbjct: 708 NLVAGEKPADVYSGIAARVLEILKRDAQKDPETFPDALHAKILIDQVDRKLVKQTVMTSV 767
Query: 814 YGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
YGVTYIGARDQIKRRLKER A +++ELFG SCYAAK+TL ALGEMF AAR IM+WL +C
Sbjct: 768 YGVTYIGARDQIKRRLKERAAISDDSELFGCSCYAAKITLEALGEMFVAAREIMNWLSDC 827
Query: 874 AKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPP 933
AKIIAS+N+ VRWTTPLGLPVVQPYRKLG H +KTSLQ+LTL+RET+K++ RQRTAFPP
Sbjct: 828 AKIIASKNETVRWTTPLGLPVVQPYRKLGIHAIKTSLQVLTLRRETDKILSSRQRTAFPP 887
Query: 934 NFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFE 993
NFVHSLD SHMMMTAVAC++AGL FAGVHDSYWTHACDVDEMNRILREKFVELYE PI E
Sbjct: 888 NFVHSLDSSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILE 947
Query: 994 NLLDSFQKSFPKLVF 1008
N+ + S P + F
Sbjct: 948 NV----RLSLPHISF 958
>gi|15242369|ref|NP_197074.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|75311147|sp|Q9LFV6.1|RPOT2_ARATH RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; Flags: Precursor
gi|9755615|emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana]
gi|11340683|emb|CAC17120.1| phage-type RNA polymerase rpoT2 [Arabidopsis thaliana]
gi|332004810|gb|AED92193.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1011
Score = 1356 bits (3510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/1038 (66%), Positives = 813/1038 (78%), Gaps = 35/1038 (3%)
Query: 1 MSNNKTPIFFSANK--FDHL-PVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAIS 57
MS+ +TP+F + FDHL P+ +KP I P+P S MWRN+AKQAIS
Sbjct: 1 MSSAQTPLFLANQTKVFDHLIPL----------HKPFISSPNPVSQSFPMWRNIAKQAIS 50
Query: 58 LHLKK--PFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMG- 114
+ S+ L S +SI + F ++ H G + I E++
Sbjct: 51 RSAARLNVSSQTRGLLVSSPESIFSKNLSFR-FPVLGSPCHGKGFRCLSGITRREEFSKS 109
Query: 115 -RTSFGVLKNDNFWCPRGYATVAEA-VSSTDVEEDVSIVEEIQELLQEMKKEEQREGENG 172
R G L RGY +VAE V STDVEE+ + E ++E+ +E K+E R
Sbjct: 110 ERCLSGTLA-------RGYTSVAEEEVLSTDVEEEPEVDELLKEMKKEKKRESHR----- 157
Query: 173 SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKS 232
S R +++ GMG K++ L RQVKIETE WE+AA EY ELL DMCEQKLAPNLPY+KS
Sbjct: 158 SWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKS 217
Query: 233 LFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG 292
LFLGWFEPLRDAIAK+QE R+ K K YA Y DQLPAD ++VITMHKLMG LMTGG++G
Sbjct: 218 LFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNG 277
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVT 352
+VV AAC +GDAIEQE+RI FL+K KK ++ E+ G E+ T EQ+KLRKKV
Sbjct: 278 CVKVVHAACTVGDAIEQEIRICTFLDKKKKGDDN---EESGGVENETSMKEQDKLRKKVN 334
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
+LIKKQKL AVR+I++ D KPW D RAKVGSR+IELL +TAYIQSPADQ + PD+
Sbjct: 335 ELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDV 394
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
PAF H + V+K + +KYGVIEC+PLV KGLE++ R+ V+PYMPMLVPP+KW+GYD
Sbjct: 395 RPAFVHTFK-VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYD 453
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
KGA+ FL SY+M+THGAKQQR+ +K PK QL+PVFEALDTLG+TKWRVN RVL+V+DRI
Sbjct: 454 KGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRI 513
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
WS GG +AD+VDR+DVPLPEKP+TEDE L+KW+W+V++ KK N ERHSQRCD ELKLSV
Sbjct: 514 WSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSV 573
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
ARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRG+LEFAEGR +G SGL WLKIH
Sbjct: 574 ARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIH 633
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LANLYAGGVDKLS +GRLAFTENHLDDIFDSAD+PLEG RWWL+AEDPFQCLAVCI+LTE
Sbjct: 634 LANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTE 693
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
ALRS SPET +SHIP+HQDGSCNGLQHYAALGRDTLGA AVNLVA EKPADVYSGIA RV
Sbjct: 694 ALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRV 753
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
L I++RDA RDP VFP+ALRA+ LL+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 754 LDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 813
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
+E E+FGA+CYAAKVTL A+ EMFQAAR IM W GECAKIIASEN+ VRWTTPLGL
Sbjct: 814 SDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGL 873
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
PVVQPY ++G VKTSLQ L+LQ ET++V+V+RQRTAFPPNF+HSLDGSHMMMTAVAC+
Sbjct: 874 PVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACK 933
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLP 1012
+AG+ FAGVHDS+WTHACDVD++N ILREKFVELY PI ENLL+SF++SFP L FPPLP
Sbjct: 934 RAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLP 993
Query: 1013 ERGDFDLREVLGSPYFFN 1030
ERGD DL+ VL SPYFFN
Sbjct: 994 ERGDLDLKVVLDSPYFFN 1011
>gi|2326363|emb|CAA04491.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1011
Score = 1353 bits (3503), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/1038 (66%), Positives = 812/1038 (78%), Gaps = 35/1038 (3%)
Query: 1 MSNNKTPIFFSANK--FDHL-PVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAIS 57
MS+ +TP+F + FDHL P+ +KP I P+P S MWRN+AKQAIS
Sbjct: 1 MSSAQTPLFLANQTKVFDHLIPL----------HKPFISSPNPVSQSFPMWRNIAKQAIS 50
Query: 58 LHLKK--PFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMG- 114
+ S+ L S +SI + F ++ H G + I E++
Sbjct: 51 RSAARLNVSSQTRGLLVSSPESIFSKNLSFR-FPVLGSPCHGKGFRCLSGITRREEFSKS 109
Query: 115 -RTSFGVLKNDNFWCPRGYATVAEA-VSSTDVEEDVSIVEEIQELLQEMKKEEQREGENG 172
R G L RGY +VAE V STDVEE+ + E ++E+ +E K+E R
Sbjct: 110 ERCLSGTLA-------RGYTSVAEEEVLSTDVEEEPEVDELLKEMKKEKKRESHR----- 157
Query: 173 SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKS 232
S R +++ GMG K++ L RQVKIETE WE+AA EY ELL DMCEQKLAPNLPY+KS
Sbjct: 158 SWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKS 217
Query: 233 LFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG 292
LFLGWFEPLRDAIAK+QE R+ K K YA Y DQLPAD ++VITMHKLMG LMTGG++G
Sbjct: 218 LFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNG 277
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVT 352
+VV AAC +GDAIEQE+RI FL+K KK ++ E+ G E+ T EQ+KLRKKV
Sbjct: 278 CVKVVHAACTVGDAIEQEIRICTFLDKKKKGDDN---EESGGVENETSMKEQDKLRKKVN 334
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
+LIKKQKL AVR+I++ D KPW D RAKVGSR+IELL +TAYIQSPADQ + PD+
Sbjct: 335 ELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDV 394
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
PAF H + V+K + +KYGVIEC+PLV KGLE++ R+ V+PYMPMLVPP+KW+GYD
Sbjct: 395 RPAFVHTFK-VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYD 453
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
KGA+ FL SY+MRTHGAKQQR+ +K PK QL+PVFEALDTLG+TKWRVN RVL+V+DRI
Sbjct: 454 KGAYLFLTSYIMRTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRI 513
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
WS GG +AD+VDR+DVPLPEKP+TEDE L+KW+W+V++ KK N ERHSQRCD ELKLSV
Sbjct: 514 WSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSV 573
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
ARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRG+LEFAEGR +G SGL WLKIH
Sbjct: 574 ARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIH 633
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LANLYAGGVDKLS +GRLAFTENHLDDIFDSAD+PLEG RWWL+AEDPFQCLAVCI+LTE
Sbjct: 634 LANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTE 693
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
ALRS SPET +SHIP+HQDGSCNGLQHYAALGRDTLGA AVNLVA EKPADVYS IA RV
Sbjct: 694 ALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSEIATRV 753
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
L I++RDA RDP VFP+ALRA+ LL+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 754 LDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 813
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
+E E+FGA+CYAAKVTL A+ EMFQAAR IM W GECAKIIASEN+ VRWTTPLGL
Sbjct: 814 SDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGL 873
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
PVVQPY ++G VKTSLQ L+LQ ET++V+V+RQRTAFPPNF+HSLDGSHMMMTAVAC+
Sbjct: 874 PVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACK 933
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLP 1012
+AG+ FAGVHDS+WTHACDVD++N ILREKFVELY PI ENLL+SF++SFP L FPPLP
Sbjct: 934 RAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLP 993
Query: 1013 ERGDFDLREVLGSPYFFN 1030
ERGD DL+ VL SPYFFN
Sbjct: 994 ERGDLDLKVVLDSPYFFN 1011
>gi|255547027|ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
gi|223546175|gb|EEF47677.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
Length = 997
Score = 1350 bits (3494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/999 (68%), Positives = 809/999 (80%), Gaps = 17/999 (1%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFV-CLDMVPRGIHEVGSGRIGE 105
MWRN A++ SL KK + + ++QD + KV+ ++ +GS RI
Sbjct: 1 MWRNFARRT-SLSSKK-LNFSSDCTQLNQDLDILQKVRHPEAQTLLCSPYSFLGSRRISG 58
Query: 106 ILNHEDYMGRTSFGVLKND---NFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMK 162
+ + + SF L N + + +GYAT A V ++ E D S +E+QE ++E+
Sbjct: 59 LSSQNHEFIKPSFTNLTNPFGFSHFLFKGYATAAAQVIASTDESDFSGCDELQEQIEEIN 118
Query: 163 KEEQREGEN----GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDM 218
K ++ + + R++ GMG GKY +LK RQ+K+ETEAWE+AA EY+ELL DM
Sbjct: 119 KHHKKMDAHFRQQQQQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAAREYQELLTDM 178
Query: 219 CEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITM 278
CEQKLAPNLPY+KSLFLGWFEPLRDAIAKEQE R +K+++ PYFD LPADMMAVITM
Sbjct: 179 CEQKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITM 238
Query: 279 HKLMGLLMT-GGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEG--- 334
HKLMGLLMT G +G RVVQAAC +G+AIE E RIH+FLEKTKKK ++ E+ EG
Sbjct: 239 HKLMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLE 298
Query: 335 ---DESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIEL 391
++ + EQEKLRKKVT+L+KKQK+ VR + KG DD PWGQ+A+ KVG R+I+L
Sbjct: 299 PVTSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQL 358
Query: 392 LTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA 451
L +TAYIQ P +QL D PDI PAF H L+ V K+T+ S++YGVIEC+P+V GLE++A
Sbjct: 359 LIETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSA 418
Query: 452 RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEAL 511
RHMVIPYMPMLVPP+ W GYD+GA+ FLPSYVMRTHGAKQQR+ VKRTP KQLEPV+EAL
Sbjct: 419 RHMVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEAL 478
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRN 571
+TLGNTKWR+N ++L+V+DRIW+ GGRLA L+DR D PLPE+ ETEDE +++KW+WKV+N
Sbjct: 479 NTLGNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKN 538
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
VKKEN ERHSQRCDIELKL+VARKMKDE+GFYYPHN+DFRGRAYPMHP+LNHLGSD+CRG
Sbjct: 539 VKKENSERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRG 598
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
ILEFAEGR LGKSG WLKIHLAN+YAGGVDKLS+EGR+AFTENHLD IFDSAD+PLEGR
Sbjct: 599 ILEFAEGRPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPLEGR 658
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
RWWL AEDPFQCLA C NL EA RSSSPET ISH+P+HQDGSCNGLQHYAALGRD LGAA
Sbjct: 659 RWWLGAEDPFQCLATCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAA 718
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
AVNLV+ EKPADVYSGIAARVL I++ DA++DP P+AL AKLL+++VDRKLVKQTVMT
Sbjct: 719 AVNLVSGEKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQTVMT 778
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
SVYGVTYIGARDQIKRRLKER A ++ L+ ASCYAAK TL AL EMF+ AR IM+WLG
Sbjct: 779 SVYGVTYIGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIMAWLG 838
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAF 931
ECAK+IASENQPV+WTTPLGLPVVQPYR+LGRH +KTSLQ+L LQ+ET+K+MVKRQRTAF
Sbjct: 839 ECAKVIASENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQRTAF 898
Query: 932 PPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 991
PPNFVHSLDGSHMMMTAVAC+ AGL FAGVHDSYWTHACDVDEMNRILRE FVELYE PI
Sbjct: 899 PPNFVHSLDGSHMMMTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVELYEAPI 958
Query: 992 FENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
ENLL+ FQKSFPKL FPPLP+RGDFDLR+VL SPYFFN
Sbjct: 959 LENLLEGFQKSFPKLKFPPLPDRGDFDLRDVLESPYFFN 997
>gi|1865721|emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Chenopodium album]
Length = 988
Score = 1350 bits (3493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/1001 (66%), Positives = 799/1001 (79%), Gaps = 30/1001 (2%)
Query: 47 MWRNVAKQAISLHLK-----KPFSRAYSFLGISQDSILRDKVK-FVCLDMVPRGIHEVGS 100
MW+ +K I ++ KP S + SQDS K++ F+ + V +G
Sbjct: 1 MWKKASKFEILRKIRNSGELKPSSNVSRWKESSQDSA---KIRQFLGQNSVNPRFPMLGF 57
Query: 101 GRIGEILNHEDYMGRTSFGVLKND----NFW-----CPRGYATVAEAVSSTDVEEDVSIV 151
GR GE+L MG ++F N F+ C A AE + + EED
Sbjct: 58 GRNGELLCRNSEMGGSNFMFYANPFGIFGFYAQSTSCSYATAAAAEEIVTASSEED---- 113
Query: 152 EEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEY 211
+EI+EL+ E+ K E+ + ++ + + GM +G+Y +L+ RQ+K+ETEAW +AA EY
Sbjct: 114 DEIRELVDEINKLERVKPQSIRRKEPINMVAGMTAGRYNVLRKRQIKVETEAWNEAAREY 173
Query: 212 RELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPAD 271
+ELL DMCEQKLAPNLPYMKSLFLGWFEPL+DAI QE C++ +++ Y FD+LPAD
Sbjct: 174 QELLADMCEQKLAPNLPYMKSLFLGWFEPLKDAIKAHQEACKVGRNRPLYGECFDELPAD 233
Query: 272 MMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKED 331
MMAVITMHKLMGLLMTG +G V+QAA IG+A+EQE +I KFLEK+KKK T N ++
Sbjct: 234 MMAVITMHKLMGLLMTGSGNGGTTVIQAATQIGEAVEQEAKIRKFLEKSKKKPATNNNDE 293
Query: 332 EEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIEL 391
++ ++ Q++L KKVT L+KKQK+ VR IV+GQDD KPW QD + KVG ++I+L
Sbjct: 294 DDSAKA------QQRLAKKVTTLMKKQKISQVREIVRGQDDSKPWSQDNQVKVGCKLIQL 347
Query: 392 LTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET-KGGSKKYGVIECNPLVLKGLERT 450
L +TAYIQ PADQLAD PPDI PAF H +TV KE+ KG ++YGVIEC+PLV +GLE+T
Sbjct: 348 LAETAYIQPPADQLADGPPDIRPAFIHTQKTVCKESQKGLRRRYGVIECDPLVRRGLEKT 407
Query: 451 ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK-KQLEPVFE 509
ARHMVIPYMPML+PP+ WTGYDKGA+ +LPSY+MRTHG KQQRD +KR + L VFE
Sbjct: 408 ARHMVIPYMPMLIPPLNWTGYDKGAYLYLPSYIMRTHGVKQQRDAIKRVARDNNLCTVFE 467
Query: 510 ALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKV 569
ALDTLGNTKWRVN +VLS++DRIW+ GG LADLVDR D+PLP +P+T+D +++KW+WKV
Sbjct: 468 ALDTLGNTKWRVNKKVLSIIDRIWASGGCLADLVDREDMPLPGEPDTDDAEEIKKWKWKV 527
Query: 570 RNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
++VKK+N ERHSQRCD ELKL+VARKMKDEEGFYYPHN+DFRGRAYPMHP+LNHLGSDLC
Sbjct: 528 KHVKKDNAERHSQRCDTELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLC 587
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
RGILEFAEGR LGKSGL+WLK+H+ANLYAGGVDKLS+EGR+AFTEN LDD+FDSAD+PLE
Sbjct: 588 RGILEFAEGRPLGKSGLNWLKVHVANLYAGGVDKLSYEGRVAFTENRLDDVFDSADRPLE 647
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
GRRWWL AEDPFQCLA CINLT+ALRSSSPE ++SHIP+HQDGSCNGLQHYAALGRD LG
Sbjct: 648 GRRWWLTAEDPFQCLAACINLTDALRSSSPEDYLSHIPIHQDGSCNGLQHYAALGRDKLG 707
Query: 750 AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTV 809
A AVNLVA KPADVYSGIAARV I++ DA++DP++ P+A AKLLL+QVDRKLVKQTV
Sbjct: 708 AEAVNLVAGGKPADVYSGIAARVFEIMRGDAEKDPSIEPNAFHAKLLLNQVDRKLVKQTV 767
Query: 810 MTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
MTSVYGVTYIG RDQIKRRLKER A +++ +LF ASCYAAK T+TAL EMF+AAR IM W
Sbjct: 768 MTSVYGVTYIGVRDQIKRRLKERDAIVDDNDLFAASCYAAKTTMTALEEMFEAARSIMGW 827
Query: 870 LGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
LG+CAKIIASENQP RW+TPLGLPVVQPYR GR VKTSLQ+LTL+ +T+KVM KRQRT
Sbjct: 828 LGDCAKIIASENQPARWSTPLGLPVVQPYRNHGRRLVKTSLQVLTLRCDTDKVMAKRQRT 887
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
AFPPNFVHSLDGSHMMMTA+AC+KAG+ FAGVHDSYWTHACDVD+MN+ILREKFVELYE
Sbjct: 888 AFPPNFVHSLDGSHMMMTAIACKKAGMNFAGVHDSYWTHACDVDKMNQILREKFVELYEQ 947
Query: 990 PIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI ENLL+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 948 PILENLLESFQESFPTLQFPPLPERGDFDLREVLESPYFFN 988
>gi|40255318|emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
Length = 862
Score = 1344 bits (3478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/862 (75%), Positives = 751/862 (87%), Gaps = 7/862 (0%)
Query: 172 GSGRNRRRVA--RGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPY 229
G GR +A G+G KY L+ RQ++IETEAWE+AA EYRELL DMCE KLAPNLPY
Sbjct: 5 GQGRQLAELAAEHGIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPY 64
Query: 230 MKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGG 289
+KSLFLGWFEPLRD I EQE + ++APYF+ LPADMMAVITMHKLMGLLMTG
Sbjct: 65 VKSLFLGWFEPLRDQIIAEQELVGERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGS 124
Query: 290 EHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETK-NKEDEEGDESNTVTTEQEKLR 348
G RV+QAAC IG+A+E EVRIHKFLEKTKKKN + +K E GD + + EQ+ LR
Sbjct: 125 GDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGD--SDIAKEQQLLR 182
Query: 349 KKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA 408
KKVTDL+KKQK+ VR +VK QD +PWGQDA AKVGSR+IEL +TA+IQ PA Q D+
Sbjct: 183 KKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDS 242
Query: 409 PPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKW 468
P+I PAFTH +RTV++E K S++YGVI+C+PLV +GL+RTA+HMVIPYMPML+PP+ W
Sbjct: 243 TPEIRPAFTHEMRTVAREQK--SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINW 300
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
TGYDKGAH FLPSYVMRTHGA+QQR+ VK+ PK+Q++ +FEALD LG+TKWRVN RVLS+
Sbjct: 301 TGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSI 360
Query: 529 LDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+DRIWS GGRLADLVDR DV LPEKP+TEDEA+L+KW+W +R+ KKEN ERHSQRCD+EL
Sbjct: 361 VDRIWSSGGRLADLVDRADVSLPEKPDTEDEAELKKWRWSMRSAKKENSERHSQRCDVEL 420
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
KL+VARKMK+E GFY+PHN+DFRGRAYPMHPYLNHLGSDLCRG+LEF+EGR LG+SGL W
Sbjct: 421 KLAVARKMKEEVGFYHPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRW 480
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIHLANLY GGVDKLS++GR+AFTENHL+DIFDSA++PLEG+RWWL+AEDPFQCLAVC+
Sbjct: 481 LKIHLANLYGGGVDKLSYDGRIAFTENHLEDIFDSANRPLEGKRWWLEAEDPFQCLAVCM 540
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
+L EALRSSSPET ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLV+ EKPADVYSGI
Sbjct: 541 DLNEALRSSSPETVISHIPVHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGI 600
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
AARV+ I++RDAQ+DPA DA RA+LL+ QVDR+LVKQTVMTSVYGVTY+GAR+QIKRR
Sbjct: 601 AARVVEIMKRDAQKDPAKDADAARARLLVDQVDRRLVKQTVMTSVYGVTYVGAREQIKRR 660
Query: 829 LKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTT 888
LKERG +++ELFGASCYAAKVTLTALGEMF+AAR IM+WLG+CAK+IA EN+PVRW T
Sbjct: 661 LKERGVIADDSELFGASCYAAKVTLTALGEMFEAARSIMNWLGDCAKVIACENEPVRWKT 720
Query: 889 PLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
PLGLPVVQPYRKLGRH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA
Sbjct: 721 PLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA 780
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
VAC+K GL FAGVHDSYWTHACDVD MN+ILREKFVELY+ PI ENLL+SF+ SFPKL F
Sbjct: 781 VACKKQGLYFAGVHDSYWTHACDVDTMNKILREKFVELYDAPILENLLESFETSFPKLKF 840
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
PPLPERG+FD+++VL S YFFN
Sbjct: 841 PPLPERGNFDMKDVLQSTYFFN 862
>gi|6958204|gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
Length = 1005
Score = 1342 bits (3473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/848 (75%), Positives = 744/848 (87%), Gaps = 2/848 (0%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
G+G KY L+ RQ++IETEAWE+AA EYRELL DMCE KLAPNLPY+KSLFL WFEPLR
Sbjct: 160 GIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLR 219
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D I EQE + ++APYF+ LPADMMAVITMHKLMGLLMTG G RV+QAAC
Sbjct: 220 DQIIAEQELVSERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 279
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG+A+E EVRIHKFLEKTKKKN + + E +++ + EQE+LRKKVTDL+KKQK+
Sbjct: 280 IGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDAD-IAKEQERLRKKVTDLMKKQKIRQ 338
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR +VK QD +PWGQDA AKVGSR+IEL +TA+IQ PA Q D+ P+I PAFTH +RT
Sbjct: 339 VRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRT 398
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
V++E + S++YGVI+C+PLV +GL+RTA+HMVIPYMPML+PP+ WTGYDKGAH FLPSY
Sbjct: 399 VAREQRK-SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSY 457
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMRTHGA+QQR+ VK+ PK+Q++ +FEALD LG+TKWRVN VLS++DRIWS GGRLADL
Sbjct: 458 VMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADL 517
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR DV LPEKP+TEDEA+L+KW+W +R+ +KEN ERHSQRCD+ELKL+VARKMK+E GF
Sbjct: 518 VDRADVSLPEKPDTEDEAELKKWRWSMRSAEKENSERHSQRCDVELKLAVARKMKEEAGF 577
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LEF+EGR LG+SGL WLKIHLANLY GGVD
Sbjct: 578 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVD 637
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS++GR+AFTENHLDDIFDSA++PLEG+RWWL+AEDPFQCLAVC++L EALRS SPET
Sbjct: 638 KLSYDGRIAFTENHLDDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSPSPETV 697
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLV+ EKPADVYSGIAARV+ I++RDAQ+
Sbjct: 698 ISHIPVHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQK 757
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DPA DA RA+LL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRLKERG +++ELF
Sbjct: 758 DPAKDADAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELF 817
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
GASCYAAKVTLTALGEMF+AAR IM+WLG+CAK+IA EN+PVRWTTPLGLPVVQPYRKLG
Sbjct: 818 GASCYAAKVTLTALGEMFEAARSIMTWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 877
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC+K GL FAGVH
Sbjct: 878 RHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKQGLYFAGVH 937
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVD MN+ILREKFVELY+ PI ENLL+SF+ SFPKL FPPLPERG+FD+++V
Sbjct: 938 DSYWTHACDVDTMNKILREKFVELYDAPILENLLESFETSFPKLKFPPLPERGNFDMKDV 997
Query: 1023 LGSPYFFN 1030
L S YFFN
Sbjct: 998 LQSTYFFN 1005
>gi|334187707|ref|NP_001190318.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|332004811|gb|AED92194.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1051
Score = 1340 bits (3469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/1035 (66%), Positives = 809/1035 (78%), Gaps = 36/1035 (3%)
Query: 1 MSNNKTPIFFSANK--FDHL-PVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAIS 57
MS+ +TP+F + FDHL P+ +KP I P+P S MWRN+AKQAIS
Sbjct: 1 MSSAQTPLFLANQTKVFDHLIPL----------HKPFISSPNPVSQSFPMWRNIAKQAIS 50
Query: 58 LHLKK--PFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMG- 114
+ S+ L S +SI + F ++ H G + I E++
Sbjct: 51 RSAARLNVSSQTRGLLVSSPESIFSKNLSFR-FPVLGSPCHGKGFRCLSGITRREEFSKS 109
Query: 115 -RTSFGVLKNDNFWCPRGYATVAEA-VSSTDVEEDVSIVEEIQELLQEMKKEEQREGENG 172
R G L RGY +VAE V STDVEE+ + E ++E+ +E K+E R
Sbjct: 110 ERCLSGTLA-------RGYTSVAEEEVLSTDVEEEPEVDELLKEMKKEKKRESHR----- 157
Query: 173 SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKS 232
S R +++ GMG K++ L RQVKIETE WE+AA EY ELL DMCEQKLAPNLPY+KS
Sbjct: 158 SWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKS 217
Query: 233 LFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG 292
LFLGWFEPLRDAIAK+QE R+ K K YA Y DQLPAD ++VITMHKLMG LMTGG++G
Sbjct: 218 LFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNG 277
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVT 352
+VV AAC +GDAIEQE+RI FL+K KK ++ E+ G E+ T EQ+KLRKKV
Sbjct: 278 CVKVVHAACTVGDAIEQEIRICTFLDKKKKGDDN---EESGGVENETSMKEQDKLRKKVN 334
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
+LIKKQKL AVR+I++ D KPW D RAKVGSR+IELL +TAYIQSPADQ + PD+
Sbjct: 335 ELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDV 394
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
PAF H + V+K + +KYGVIEC+PLV KGLE++ R+ V+PYMPMLVPP+KW+GYD
Sbjct: 395 RPAFVHTFK-VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYD 453
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
KGA+ FL SY+M+THGAKQQR+ +K PK QL+PVFEALDTLG+TKWRVN RVL+V+DRI
Sbjct: 454 KGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRI 513
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
WS GG +AD+VDR+DVPLPEKP+TEDE L+KW+W+V++ KK N ERHSQRCD ELKLSV
Sbjct: 514 WSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSV 573
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
ARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRG+LEFAEGR +G SGL WLKIH
Sbjct: 574 ARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIH 633
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LANLYAGGVDKLS +GRLAFTENHLDDIFDSAD+PLEG RWWL+AEDPFQCLAVCI+LTE
Sbjct: 634 LANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTE 693
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
ALRS SPET +SHIP+HQDGSCNGLQHYAALGRDTLGA AVNLVA EKPADVYSGIA RV
Sbjct: 694 ALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRV 753
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
L I++RDA RDP VFP+ALRA+ LL+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 754 LDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 813
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
+E E+FGA+CYAAKVTL A+ EMFQAAR IM W GECAKIIASEN+ VRWTTPLGL
Sbjct: 814 SDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGL 873
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
PVVQPY ++G VKTSLQ L+LQ ET++V+V+RQRTAFPPNF+HSLDGSHMMMTAVAC+
Sbjct: 874 PVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACK 933
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLP 1012
+AG+ FAGVHDS+WTHACDVD++N ILREKFVELY PI ENLL+SF++SFP L FPPLP
Sbjct: 934 RAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLP 993
Query: 1013 ERGDFDLR-EVLGSP 1026
ERGD DL+ ++ +P
Sbjct: 994 ERGDLDLKVNIVSTP 1008
>gi|356560775|ref|XP_003548663.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 955
Score = 1337 bits (3460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/906 (71%), Positives = 761/906 (83%), Gaps = 24/906 (2%)
Query: 130 RGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKY 189
RG+A+VAEA+ STD E+D +E+Q+LL+EM K E + + S KY
Sbjct: 69 RGHASVAEAIESTDTEDDY---DEVQKLLEEMAKAEHKVDSS--------------SYKY 111
Query: 190 RMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ 249
++LK RQ++ ETEAW +AA EY ELL DM ++KLAPNLPYMKSLFLGWFEPLR+AI +Q
Sbjct: 112 KLLKRRQIESETEAWAEAAREYGELLEDMRDKKLAPNLPYMKSLFLGWFEPLRNAILADQ 171
Query: 250 ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH-GRARVVQAACIIGDAIE 308
+ C+ +K ++++APYF+ LPADMMAV+TMHKLM LLMT G ARV+QAAC IG+A+E
Sbjct: 172 DLCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNANGVGTARVIQAACQIGEAVE 231
Query: 309 QEVRIHKFLEKTKKKNETKNKEDEEG----DESNTVTTEQEKLRKKVTDLIKKQKLPAVR 364
E RI++F+++ K+ + E+ +E+ + +Q +LRK+V L+KKQK
Sbjct: 232 NEARIYQFMKREKENKSSHLAPVEQSGKLTEENGEMEQKQSRLRKRVAGLMKKQKKLQAM 291
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVS 424
I+ QDD+K WGQ+A+ KVGSR+++LL +TAYIQ P +Q+ D PPDI PAF H LRT+S
Sbjct: 292 GIIGRQDDWKTWGQEAQVKVGSRLMQLLIETAYIQPPTNQIGDGPPDIHPAFRHTLRTLS 351
Query: 425 KETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVM 484
E + +++YGVIEC+PLV GLE++ARHMVIPYMPMLVPP+ WTGYDKGA+ FLPSYVM
Sbjct: 352 NERE--TRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVM 409
Query: 485 RTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD 544
R HGAKQQR+ VKR PK QL+PVFEAL+TLGNTKWRVN RVL V+D+IW+ GGRLADLVD
Sbjct: 410 RVHGAKQQREAVKRAPKSQLDPVFEALNTLGNTKWRVNKRVLCVIDQIWANGGRLADLVD 469
Query: 545 RNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
R +VP P++P+T DEA++RKW+WKV+ VKKEN ERHSQRCDIELKL+VARKMKDEE FYY
Sbjct: 470 RENVPSPKEPDTIDEAEIRKWKWKVKAVKKENSERHSQRCDIELKLAVARKMKDEEAFYY 529
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR+LGKSGL WLKIHLANLYAGGVDKL
Sbjct: 530 PHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAGGVDKL 589
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S++GR++FTENHLDDIFDSAD+PLEG+ WWL+AEDPFQCLA CINL+EALRS +PET IS
Sbjct: 590 SYDGRISFTENHLDDIFDSADRPLEGKHWWLQAEDPFQCLAACINLSEALRSPTPETTIS 649
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
H+PVHQDGSCNGLQHYAALGRD LGAAAVNLV ++PADVYSGIAARVL I++RDA++DP
Sbjct: 650 HMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAEKDP 709
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
P+AL A+ L+SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER A ++ ELF A
Sbjct: 710 RTNPNALHARRLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDVELFAA 769
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRH 904
SCYAAK TLTAL EMF+AAR IM WLG+CAK+IA+ NQ VRW TPLGLPVVQPYR+ GRH
Sbjct: 770 SCYAAKTTLTALEEMFEAARSIMGWLGDCAKVIAATNQAVRWITPLGLPVVQPYRQFGRH 829
Query: 905 TVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
+KTSLQILTLQRET KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC+KAGL FAGVHDS
Sbjct: 830 LIKTSLQILTLQRETNKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDS 889
Query: 965 YWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLG 1024
YWTHACDVDEMNRILREKFVELY+ PI ENLL+SFQK+FP L FPPLPERGDFDL+EVLG
Sbjct: 890 YWTHACDVDEMNRILREKFVELYDAPILENLLESFQKTFPALNFPPLPERGDFDLQEVLG 949
Query: 1025 SPYFFN 1030
S YFFN
Sbjct: 950 SAYFFN 955
>gi|15221580|ref|NP_177063.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|3914832|sp|P92969.1|RPOT1_ARATH RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; Flags:
Precursor
gi|12323220|gb|AAG51592.1|AC011665_13 DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|1742971|emb|CAA70583.1| mitochondrial singel subunit DNA-directed RNA polymerase [Arabidopsis
thaliana]
gi|2330566|emb|CAA70210.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|332196752|gb|AEE34873.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 976
Score = 1330 bits (3443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/992 (65%), Positives = 771/992 (77%), Gaps = 24/992 (2%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHE---VGSGRI 103
MWRN+ +A SL R FL S S V V RGI + R
Sbjct: 1 MWRNILGRA-SL-------RKVKFLSDSSSSGTHYPVNRV------RGILSSVNLSGVRN 46
Query: 104 GEILNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKK 163
G +N + MG ++ + GYAT A+A+ STD E++ S +E+ EL+ EM+K
Sbjct: 47 GLSINPVNEMG--GLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEVNELITEMEK 104
Query: 164 EEQREGENG--SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQ 221
E +R + + +RV GMG+ K+ MLK RQVK+ETE WE+AA E RE+L DMCEQ
Sbjct: 105 ETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQ 164
Query: 222 KLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
KLAPNLPYMKSLFLGWFEP+R+AI + + ++ K K+ YAP+ +QLPAD MAVITMHK+
Sbjct: 165 KLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKM 224
Query: 282 MGLLMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD--ESN 338
MGLLMT E G ++V AA IG+A+EQEVRI+ FL+K KKN T + E +
Sbjct: 225 MGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEE 284
Query: 339 TVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398
V E EK RK+VT L++K KL V+ +V+ D FKPWGQ+A+ KVG+R+I+LL + AYI
Sbjct: 285 IVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYI 344
Query: 399 QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY 458
Q PA+Q D PPDI PAF RTV+ E S++YG IEC+PLVLKGL+++ARHMVIPY
Sbjct: 345 QPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPY 404
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+PML+PP WTGYD+GAHFFLPSYVMRTHGAKQQR +KRTPK+QLEPV+EALDTLGNTK
Sbjct: 405 LPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTK 464
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRE 578
W++N +VLS++DRIW+ GGR+ LVDR DVP+PE+PE ED+ + + W+W+ + K+N E
Sbjct: 465 WKINKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNE 524
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
RHSQRCDIELKL VARKMKDEEGFYYPHNVDFRGRAYP+HPYLNHLGSDLCRGILEF EG
Sbjct: 525 RHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEG 584
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAE 698
+ LGKSGL WLKIH+ANLYAGGVDKL++E R+AFTE+HL+DIFDS+D+PLEG+RWWL AE
Sbjct: 585 KPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAE 644
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
DPFQCLA CINL+EALRS PE ISHIP+HQDGSCNGLQHYAALGRD LGA AVNLV
Sbjct: 645 DPFQCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTG 704
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
EKPADVY+ IAARVL I+Q+DA+ DP FP+A AKL+L QVDRKLVKQTVMTSVYGVTY
Sbjct: 705 EKPADVYTEIAARVLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTY 764
Query: 819 IGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
GARDQIK+RLKERG +++ F ASCYAAK+TL AL EMF+AAR I SW G+CAKIIA
Sbjct: 765 SGARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIA 824
Query: 879 SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHS 938
SEN V WTTPLGLPVVQPYRK GRH VKT+LQ+LTL RET+KVM +RQ TAF PNF+HS
Sbjct: 825 SENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHS 884
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LDGSHMMMTAVAC +AGL+FAGVHDS+WTHACDVD MN ILREKFVELYE PI ENLL+S
Sbjct: 885 LDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLES 944
Query: 999 FQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FQKSFP + FPPLPERGDFDLR+VL S YFFN
Sbjct: 945 FQKSFPDISFPPLPERGDFDLRKVLESTYFFN 976
>gi|356526655|ref|XP_003531932.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 949
Score = 1328 bits (3436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/905 (70%), Positives = 757/905 (83%), Gaps = 18/905 (1%)
Query: 131 GYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYR 190
G+++VAEA+ STD E+D +E+Q+LLQ+M K E + N + R
Sbjct: 58 GFSSVAEAIESTDTEDDY---DEVQKLLQQMAKAEHKVD------NSSSSSSYKYKLLKR 108
Query: 191 MLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQE 250
RQ+K ETEAW +AA EY ELL DM EQKLAPNLPYMKSLFLGWFEPLR+AI +QE
Sbjct: 109 ----RQIKSETEAWAEAAREYEELLEDMREQKLAPNLPYMKSLFLGWFEPLRNAILADQE 164
Query: 251 RCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH-GRARVVQAACIIGDAIEQ 309
C+ +K ++++APYF+ LPADMMAV+TMHKLM LLMT G ARV+QAAC IG+A+E
Sbjct: 165 LCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNTNGVGTARVIQAACQIGEAVEN 224
Query: 310 EVRIHKFLEKTKKKNETK----NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
E RI++F+++ K+ + + E +E+ + +Q +LRK+V L+KKQK
Sbjct: 225 EARIYQFMKREKENKSSHVVPVEQRGELTEENGEMDKKQSRLRKRVAALMKKQKKLQAMG 284
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
IV+GQDD+K WGQ+A+ KVGSR+++LL +TAYIQ PA+ + D PPDI PAF H L+T+S
Sbjct: 285 IVRGQDDWKAWGQEAQVKVGSRLMQLLIETAYIQPPANLIGDGPPDIRPAFKHTLKTLSS 344
Query: 426 ETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
E++ +++YGVIEC+PLV GLE++ARHMVIPYMPMLVPP+ WTGYDKGA+ FLPSYVMR
Sbjct: 345 ESQKETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMR 404
Query: 486 THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
HGAKQQR+ VKR PK QL+PVFEAL+TLG+TKWRVN RVL V+D+IW+ GGRLADLVDR
Sbjct: 405 VHGAKQQREAVKRAPKSQLDPVFEALNTLGSTKWRVNKRVLCVIDQIWANGGRLADLVDR 464
Query: 546 NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
+VP P++P+T+DEA++RKW+WKV+ VKKEN ERHSQRCDIELKL+VARKMKDEEGFYYP
Sbjct: 465 ENVPEPKEPDTKDEAEIRKWKWKVKAVKKENNERHSQRCDIELKLAVARKMKDEEGFYYP 524
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HN+DFRGRAYPMHPYLNHLGSDLCRGILEF+EGR LGKSGL WLKIHLANLYAGGVDKLS
Sbjct: 525 HNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLCWLKIHLANLYAGGVDKLS 584
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
++GR+ FTENHLDDIFDSAD+PLEG+RWWL+AEDPFQCLA C NL+EALRS +PET ISH
Sbjct: 585 YDGRIEFTENHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACTNLSEALRSPTPETTISH 644
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
+PVHQDGSCNGLQHYAALGRD LGAAAVNLV ++PADVYSGIAARVL I++RDA++DP
Sbjct: 645 MPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAEKDPQ 704
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
P+AL A+ L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER A ++ ELF AS
Sbjct: 705 TNPNALHARRLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDVELFAAS 764
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHT 905
CYAA+ TLTAL EMF+AAR IMSWLG+CAK+IAS NQ V+W TPLGLPVVQPYR+ GRH
Sbjct: 765 CYAARTTLTALEEMFEAARSIMSWLGDCAKVIASTNQAVQWITPLGLPVVQPYRQFGRHL 824
Query: 906 VKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
+KTSLQILTLQRET KVMVKRQRTAFPPNFVHSLDGSHMMMT VAC+KAGL FAGVHDSY
Sbjct: 825 IKTSLQILTLQRETNKVMVKRQRTAFPPNFVHSLDGSHMMMTTVACKKAGLNFAGVHDSY 884
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGS 1025
WTHACDVDEMNRILREKFVELY+ PI ENLL+SFQK+FP L FPPLPERGDFDL+EVL S
Sbjct: 885 WTHACDVDEMNRILREKFVELYDAPILENLLESFQKTFPALNFPPLPERGDFDLQEVLES 944
Query: 1026 PYFFN 1030
YFFN
Sbjct: 945 TYFFN 949
>gi|334183757|ref|NP_001185355.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|332196753|gb|AEE34874.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 983
Score = 1324 bits (3426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/999 (64%), Positives = 771/999 (77%), Gaps = 31/999 (3%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHE---VGSGRI 103
MWRN+ +A SL R FL S S V V RGI + R
Sbjct: 1 MWRNILGRA-SL-------RKVKFLSDSSSSGTHYPVNRV------RGILSSVNLSGVRN 46
Query: 104 GEILNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKK 163
G +N + MG ++ + GYAT A+A+ STD E++ S +E+ EL+ EM+K
Sbjct: 47 GLSINPVNEMG--GLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEVNELITEMEK 104
Query: 164 EEQREGENG--SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQ 221
E +R + + +RV GMG+ K+ MLK RQVK+ETE WE+AA E RE+L DMCEQ
Sbjct: 105 ETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQ 164
Query: 222 KLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
KLAPNLPYMKSLFLGWFEP+R+AI + + ++ K K+ YAP+ +QLPAD MAVITMHK+
Sbjct: 165 KLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKM 224
Query: 282 MGLLMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD--ESN 338
MGLLMT E G ++V AA IG+A+EQEVRI+ FL+K KKN T + E +
Sbjct: 225 MGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEE 284
Query: 339 TVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398
V E EK RK+VT L++K KL V+ +V+ D FKPWGQ+A+ KVG+R+I+LL + AYI
Sbjct: 285 IVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYI 344
Query: 399 QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-------A 451
Q PA+Q D PPDI PAF RTV+ E S++YG IEC+PLVLKGL+++ A
Sbjct: 345 QPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSVSRIVDYA 404
Query: 452 RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEAL 511
RHMVIPY+PML+PP WTGYD+GAHFFLPSYVMRTHGAKQQR +KRTPK+QLEPV+EAL
Sbjct: 405 RHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEAL 464
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRN 571
DTLGNTKW++N +VLS++DRIW+ GGR+ LVDR DVP+PE+PE ED+ + + W+W+ +
Sbjct: 465 DTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKK 524
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
K+N ERHSQRCDIELKL VARKMKDEEGFYYPHNVDFRGRAYP+HPYLNHLGSDLCRG
Sbjct: 525 AIKQNNERHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRG 584
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
ILEF EG+ LGKSGL WLKIH+ANLYAGGVDKL++E R+AFTE+HL+DIFDS+D+PLEG+
Sbjct: 585 ILEFCEGKPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGK 644
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
RWWL AEDPFQCLA CINL+EALRS PE ISHIP+HQDGSCNGLQHYAALGRD LGA
Sbjct: 645 RWWLNAEDPFQCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGAD 704
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
AVNLV EKPADVY+ IAARVL I+Q+DA+ DP FP+A AKL+L QVDRKLVKQTVMT
Sbjct: 705 AVNLVTGEKPADVYTEIAARVLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMT 764
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
SVYGVTY GARDQIK+RLKERG +++ F ASCYAAK+TL AL EMF+AAR I SW G
Sbjct: 765 SVYGVTYSGARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMFEAARAIKSWFG 824
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAF 931
+CAKIIASEN V WTTPLGLPVVQPYRK GRH VKT+LQ+LTL RET+KVM +RQ TAF
Sbjct: 825 DCAKIIASENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAF 884
Query: 932 PPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 991
PNF+HSLDGSHMMMTAVAC +AGL+FAGVHDS+WTHACDVD MN ILREKFVELYE PI
Sbjct: 885 APNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPI 944
Query: 992 FENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
ENLL+SFQKSFP + FPPLPERGDFDLR+VL S YFFN
Sbjct: 945 LENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 983
>gi|2330568|emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 976
Score = 1324 bits (3426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/992 (65%), Positives = 769/992 (77%), Gaps = 24/992 (2%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHE---VGSGRI 103
MWRN+ +A SL R FL S S V V RGI + R
Sbjct: 1 MWRNILGRA-SL-------RKVKFLSDSSSSGTHYPVNRV------RGILSSVNLSGVRN 46
Query: 104 GEILNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKK 163
G +N + MG ++ + GYAT A+A+ STD E++ S +E+ EL+ EM+K
Sbjct: 47 GLSINPVNEMG--GLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEVNELITEMEK 104
Query: 164 EEQREGENG--SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQ 221
E +R + + +RV GMG+ K+ MLK RQVK+ETE WE+AA E RE+L DMCEQ
Sbjct: 105 ETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQ 164
Query: 222 KLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
KLAPNLPYMKSLFLGWFEP+R+AI + + ++ K K+ YAP+ +QLPAD MAVITMHK+
Sbjct: 165 KLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKM 224
Query: 282 MGLLMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD--ESN 338
MGLLMT E G ++V AA IG+A+EQEVRI+ FL+K KKN T + E +
Sbjct: 225 MGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEE 284
Query: 339 TVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398
V E EK RK+VT L++K KL V+ +V+ D FKPWGQ+A+ KVG+R+I+LL + AYI
Sbjct: 285 IVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYI 344
Query: 399 QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY 458
Q PA+Q D PPDI PAF RTV+ E S++YG IEC+PLVLKGL+++ARHMVIPY
Sbjct: 345 QPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPY 404
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+PML+PP WTGYD+GAHFFLPSYVMRTHGAKQQR +KRTPK+QLEPV+EALDTLGNTK
Sbjct: 405 LPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTK 464
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRE 578
W++N +VLS++DRIW+ GGR+ LVDR DVP+P +PE ED+ + + W+W+ + K+N E
Sbjct: 465 WKINKKVLSLVDRIWANGGRIGGLVDREDVPIPVEPEREDQEKFKNWRWESKKAIKQNNE 524
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
RHSQRCDIELKL VARKMKDEEGFYYPHNVDFRGRAYP+HPYLNHLGSDLCRGILEF EG
Sbjct: 525 RHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEG 584
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAE 698
+ LGKSGL WLKIH+ANLYAGGVDKL++E R+AFTE+HL+DIFDS+D+PLEG+RWWL AE
Sbjct: 585 KPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAE 644
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
DPFQCLA CINL+EALRS PE ISHIP+HQDGSCNGLQHYAALGRD LGA AVNLV
Sbjct: 645 DPFQCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTG 704
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
EKPADVY+ IAARVL I+Q+DA+ DP FP+A AKL+L QVDRKLVKQTVMTSVYGVTY
Sbjct: 705 EKPADVYTEIAARVLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTY 764
Query: 819 IGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
ARDQIK+RLKERG +++ F ASCYAAK+TL AL EMF+AAR I SW G+CAKIIA
Sbjct: 765 SSARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIA 824
Query: 879 SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHS 938
SEN V WTTPLGLPVVQPYRK GRH VKT+LQ+LTL RET+KVM +RQ TAF PNF+HS
Sbjct: 825 SENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHS 884
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LDGSHMMMTAVAC +AGL+FAGVHDS+WTHACDVD MN +LREKFVELYE PI ENLL+S
Sbjct: 885 LDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDIMNTVLREKFVELYEKPILENLLES 944
Query: 999 FQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FQKSFP + FPPLPERGDFDLR+VL S YFFN
Sbjct: 945 FQKSFPDISFPPLPERGDFDLRKVLESTYFFN 976
>gi|449435282|ref|XP_004135424.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 968
Score = 1310 bits (3390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/995 (65%), Positives = 770/995 (77%), Gaps = 38/995 (3%)
Query: 47 MWRNVAKQAISLHLK--KPFSRAYSFLGISQDSILRDKVKFV-CLDMVPRGIHEVGSGRI 103
MWRNV K A S K FS + S +++D I D+++ L+ + GS RI
Sbjct: 1 MWRNVFKTAASRKAKLFSEFSSSTS-RKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRI 59
Query: 104 GEILNHEDYMGRTSFGVLKNDN-------FWCPRGYATVAEAVSSTDVEEDVSIVEEIQE 156
I H +G T+ + N + +GYAT AEA E D+S EEIQE
Sbjct: 60 --IFLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAI---FEGDLSGSEEIQE 114
Query: 157 LLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLM 216
+++ + K+++ E + + + G KY ML+ RQ+KIETEAWE+AA EY++L+
Sbjct: 115 IMEGLNKQDKVELHF---KQPKGMVDGNRDTKYDMLRKRQIKIETEAWEEAAKEYQDLIA 171
Query: 217 DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVI 276
D+CEQKLAPNLPYMKSLFLGWF+PLRDAI EQE + + ++A YF LPADMMAVI
Sbjct: 172 DICEQKLAPNLPYMKSLFLGWFQPLRDAIVAEQESVKFKRSSPSHALYFHLLPADMMAVI 231
Query: 277 TMHKLMGLLMTGGEHG-RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD 335
TMHKLMGLLM+ E G RV QAA IG+AIE EVRI F EKTKK+ E
Sbjct: 232 TMHKLMGLLMSDIEGGGSVRVTQAASGIGEAIENEVRIRNFFEKTKKQPEQ--------- 282
Query: 336 ESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQT 395
+ +KLRKK+T L+K+QKL V IVK DD KPWG DA KVG R+I+LL +T
Sbjct: 283 ----LAEGHDKLRKKLTKLMKQQKLQKVNFIVKNHDDSKPWGTDAHVKVGCRLIQLLIET 338
Query: 396 AYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMV 455
AYIQ P DQ+ DAPPD+ PAF H+L+T KE++ K+YGVIEC+PLV +G+ +TA HM+
Sbjct: 339 AYIQPPVDQIGDAPPDLRPAFVHSLKTSLKESQRLGKRYGVIECDPLVYRGMVKTAGHMI 398
Query: 456 IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLG 515
IPYMPMLVPP KWTGYD+GAHFFLPSYVMR GA+QQR+ VKR KKQL PVF+ALD LG
Sbjct: 399 IPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGARQQREAVKRASKKQLGPVFKALDILG 458
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575
+TKWRVN RVLSV+++IW+ GGRLADLVDR D+PLPE+P EDEA++R W+WKV+ VK+E
Sbjct: 459 STKWRVNKRVLSVIEKIWASGGRLADLVDREDMPLPEQPMVEDEAEIRNWKWKVKAVKRE 518
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
N ERHSQRCD ELKL+VARKMK+EEGFYYPHN+DFRGRAYPMHP+LNH+GSD CRG LEF
Sbjct: 519 NSERHSQRCDTELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHIGSDFCRGTLEF 578
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
AEGR LG+SGL WLKIHLANLYAGGVDKLS++ R++FTENHLD+IFDSAD+PLEG RWWL
Sbjct: 579 AEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGSRWWL 638
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
AEDPFQCLAVCI+L+EALRS SPET ISH+PVHQDGSCNGLQHYAALGRD LGA AVNL
Sbjct: 639 GAEDPFQCLAVCIDLSEALRSPSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAEAVNL 698
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
A +KPADVYSGIA+RVL I++ DA +DPA P+AL A+LL++QVDRKLVKQTVMTSVYG
Sbjct: 699 AAGDKPADVYSGIASRVLDIMRSDAAKDPASNPNALHARLLINQVDRKLVKQTVMTSVYG 758
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VTY GA+DQI++RLKER + E LF ASCYAAK TLTA+GEMF+AA+ IM+WLGECAK
Sbjct: 759 VTYAGAKDQIRQRLKERSSIENERHLFTASCYAAKTTLTAIGEMFEAAKSIMNWLGECAK 818
Query: 876 IIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNF 935
+IASENQ VRWTTPLGLPVVQPYRKLGRH VKTSLQ+L+LQRET+KVM RQRTAFPPN+
Sbjct: 819 VIASENQAVRWTTPLGLPVVQPYRKLGRHLVKTSLQMLSLQRETDKVMAMRQRTAFPPNY 878
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+HSLD SHMMMTA+AC++AGL FAGV THACDVDEMN ILR+KFVELYE PI ENL
Sbjct: 879 IHSLDSSHMMMTALACKRAGLNFAGV-----THACDVDEMNIILRKKFVELYEAPILENL 933
Query: 996 LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
L FQKSFP L FPPLP GDFDL+EVL S YFFN
Sbjct: 934 LKDFQKSFPNLKFPPLPVGGDFDLKEVLQSTYFFN 968
>gi|297841627|ref|XP_002888695.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata subsp.
lyrata]
gi|297334536|gb|EFH64954.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata subsp.
lyrata]
Length = 975
Score = 1308 bits (3385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/989 (64%), Positives = 769/989 (77%), Gaps = 19/989 (1%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEI 106
MWRN+ +A SL K S + S + + R + V L V G+ I I
Sbjct: 1 MWRNILGRA-SLRKVKFLSDSSSGTHFQVNRV-RGILSSVNLIGVRNGLS------INPI 52
Query: 107 LNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQ 166
+++ G +SF + + GYAT A+A+ STD E++ S +E+ EL+ EM+KE +
Sbjct: 53 ---DEFGGLSSF---RYGQCYVFEGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETE 106
Query: 167 REGENG--SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLA 224
R + + +RV GMG+ KY ML+ RQVK+ETE WE+AA E RE+L DMCEQKLA
Sbjct: 107 RIRKKARLAATPPKRVIAGMGAQKYYMLRQRQVKMETEEWERAARECREILADMCEQKLA 166
Query: 225 PNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGL 284
PNLPYMK+LFLGWFEP+R+AI + + ++ K K+ YAP+ +QLPAD MAVITM+K+MGL
Sbjct: 167 PNLPYMKTLFLGWFEPVRNAIQADLDLFKIKKGKIPYAPFMEQLPADKMAVITMNKMMGL 226
Query: 285 LMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD--ESNTVT 341
LMT E G ++V AA IG+A+EQEVRI+ FL+K KKN T + E TV
Sbjct: 227 LMTNVEGVGIVKLVNAATQIGEAVEQEVRINSFLQKNNKKNATGKTINTEAVHVSEETVA 286
Query: 342 TEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSP 401
E EK RK+ T L++K KL V+ +V+ D FKPWGQ+A+ KVG+R+I+LL + AYIQ P
Sbjct: 287 KETEKARKRATVLMEKNKLREVKVLVRKHDSFKPWGQEAQVKVGARLIQLLIENAYIQPP 346
Query: 402 ADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPM 461
A+Q D PPDI PAF RTV+ E S++YG IEC+PLVLKGL+++ARHMVIPY+PM
Sbjct: 347 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPM 406
Query: 462 LVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRV 521
L+PP WTGYD+GAH FLPS++MRTHGA QQR ++RTPK+QLEPVFEALDTLGNTKWR+
Sbjct: 407 LIPPQNWTGYDQGAHLFLPSFIMRTHGAIQQRTVMRRTPKEQLEPVFEALDTLGNTKWRI 466
Query: 522 NNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHS 581
N +VLS++DRIW+ GGRL LVDR DVP+PE+PE ED + + W+W+ + K+N ERHS
Sbjct: 467 NKKVLSLVDRIWANGGRLGGLVDREDVPVPEEPEREDHEKFKNWKWESKKAIKQNNERHS 526
Query: 582 QRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL 641
QRCDIELKL VARKMKDEEGFYYPHNVDFRGRAYP+HPYLNHLGSDLCRGILEF EG+ L
Sbjct: 527 QRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPL 586
Query: 642 GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPF 701
GKSGL WLKIH+ANLYAGGVDKL++E R+AFTE+HL+DI+DS+D+PLEG+RWWL AEDPF
Sbjct: 587 GKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIYDSSDRPLEGKRWWLNAEDPF 646
Query: 702 QCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKP 761
QCLA CINL+EALRS PE ISHIP+HQDGSCNGLQHYAALGRD LGA AVNLV EKP
Sbjct: 647 QCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKP 706
Query: 762 ADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGA 821
ADVY+ IAARV I+Q+DA+ DP FP+A AKL+L QVDRKLVKQTVMTSVYGVTY GA
Sbjct: 707 ADVYAEIAARVFKIMQQDAKEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGA 766
Query: 822 RDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
RDQIK+RLKERG +++ F A+CYAAK+TL AL EMF+AAR I SW G+CAKIIASEN
Sbjct: 767 RDQIKKRLKERGTFEDDSLTFHAACYAAKITLKALEEMFEAARAIKSWFGDCAKIIASEN 826
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDG 941
+ V WTTPLGLPVVQPYRK GRH VKT+LQ+LTL RET+KV +RQ TAF PNF+HSLDG
Sbjct: 827 KAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVAARRQMTAFAPNFIHSLDG 886
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
SHMMMTAVAC + GL+FAGVHDS+WTHACDV+ MN ILREKFVELYE PI ENLL+SFQK
Sbjct: 887 SHMMMTAVACNRVGLSFAGVHDSFWTHACDVEIMNTILREKFVELYEKPILENLLESFQK 946
Query: 1002 SFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
SFP + FPPLPERGDFDLR+VL SPYFFN
Sbjct: 947 SFPDISFPPLPERGDFDLRKVLQSPYFFN 975
>gi|48716693|dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 951
Score = 1281 bits (3315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/779 (77%), Positives = 686/779 (88%), Gaps = 1/779 (0%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
G+G KY ML+ RQ++IETEAWE+AA EYRELL DMC+QKLAPNLPY+KSLFLGWFEPLR
Sbjct: 171 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 230
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D I EQE + ++A YF+ LPADMMAVITMHKLMGLLMTG G RV+QAAC
Sbjct: 231 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 290
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG+AIE EVRIHKFLEKTKKK+ + +EEG +S+ + EQE+LRKKVTDL+KKQK+
Sbjct: 291 IGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQKIRQ 349
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRT 422
VR IVK QD+ KPWGQDA AKVGSR+IEL+ +TAYIQ PA Q AD PPDI PAFTH +RT
Sbjct: 350 VRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRT 409
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
V++E + S++YGVI+C+PLV +GL+RTA+HMVIPYMPML+PP+ WTGYDKGAH FLPSY
Sbjct: 410 VAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSY 469
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMRTHGA+QQRD V+R P++Q++ VFEAL+TLG+TKWRVN RVLS++DRIWS GGRLADL
Sbjct: 470 VMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADL 529
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
VDR DV LPEKP+TEDE +L+KW+W +R KKEN ERHSQRCD+ELKL+VARKMKDE+GF
Sbjct: 530 VDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGF 589
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHPYLNHLGSDLCRG+LEFAEGR LGKSGL WLKIHLANLYAGGVD
Sbjct: 590 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVD 649
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLS++GR+AFTENHL+DIFDSAD+PLEG+RWWL AEDPFQCLAVCINLTEALRS SPET
Sbjct: 650 KLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETM 709
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISHIPVHQDGSCNGLQHYAALGRD LGA AVNLVA EKPADVY+GIA RV+ I++ DA +
Sbjct: 710 ISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALK 769
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DPA PDA RA+LLL QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRLKER +++ELF
Sbjct: 770 DPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELF 829
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
ASCYAAKVTLTALGEMFQAAR IM+WLG+CAK+IA EN+PVRWTTPLGLPVVQPYRKLG
Sbjct: 830 SASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 889
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGV 961
RH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++ GL FA V
Sbjct: 890 RHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAVV 948
>gi|308026130|emb|CBL69150.1| RNA polymerase [Nuphar advena]
Length = 985
Score = 1273 bits (3295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/860 (70%), Positives = 709/860 (82%), Gaps = 10/860 (1%)
Query: 175 RNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLF 234
R R R S KY +L+ RQVK+ETEAWE AA EYREL+ +MCE+KLAP+LPY+KSLF
Sbjct: 132 RGRPARERERESSKYNLLRRRQVKMETEAWEDAAREYRELIKEMCEKKLAPHLPYVKSLF 191
Query: 235 LGWFEPLRDAIAKEQERCRMAKHKVA--YAPYFDQLPADMMAVITMHKLMGLLMTGGEHG 292
LGWFEP RDAI ++QE R K +A YAP+ LPADMMAVI MHK+M LLM G + G
Sbjct: 192 LGWFEPFRDAIKEDQELQRRRKKNLAAAYAPFIGHLPADMMAVIVMHKMMVLLMNGQDDG 251
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKN--KEDEEGDESNTVTTEQEKLRKK 350
R+V AAC IG+AIEQEVRI+ F +K KK E+ E + N QE LRK+
Sbjct: 252 CVRLVHAACHIGEAIEQEVRIYNFFQKIKKSTRENQILSENHENESKN-----QEALRKR 306
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
VT+L+KK+K+ V+ +V+ DD +PWG+D+ AK+GSR I+LL QT Y+Q P +QLA+ PP
Sbjct: 307 VTNLLKKKKIRDVQLLVEA-DDVEPWGRDSHAKLGSRXIDLLIQTXYVQPPLNQLAZGPP 365
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTG 470
+I PAF H +T KE K+YG+IEC+PLV KGL+ TARH+VIPYMPML+PP KWTG
Sbjct: 366 EIRPAFRHTFKTXKKEXDNSVKRYGIIECDPLVRKGLDATARHLVIPYMPMLIPPKKWTG 425
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKG H FLPSYVMRTHGAKQQRD +K PK QL+ VFEALDTLG+TKWRVN RVL V+D
Sbjct: 426 YDKGGHLFLPSYVMRTHGAKQQRDALKSVPKXQLKEVFEALDTLGSTKWRVNKRVLDVID 485
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
+W+ G +A LVD +D+ LPEKP TEDEAQ+R+W+W V+ VKKEN ERH+QRCDIELKL
Sbjct: 486 SLWASGRPIAGLVDHSDIALPEKPCTEDEAQMRRWRWSVKKVKKENCERHAQRCDIELKL 545
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
SVARKM+ E+GFYYPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEG+ LGK+GL WLK
Sbjct: 546 SVARKMRKEDGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGKPLGKTGLRWLK 605
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLANLY GGVDKLS +GRL F ENHL DIFDSA++P+EGR+WWL AEDPFQCLA CI+L
Sbjct: 606 IHLANLYGGGVDKLSFDGRLTFVENHLADIFDSAERPIEGRQWWLNAEDPFQCLAACIDL 665
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
+ AL+SSSPE ISHIPVH DGSCNGLQHYAALGRD LGAA+VNLV+ EKP DVYSGIAA
Sbjct: 666 SXALKSSSPEDAISHIPVHLDGSCNGLQHYAALGRDRLGAASVNLVSGEKPXDVYSGIAA 725
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RV+ I+ RD+++DPAV P +L A++L+ QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK
Sbjct: 726 RVMEIVVRDSKKDPAVHPTSLLARILIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 785
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
ER ++ LF A+CYAAKVTL+AL EMFQAAR IMSWLG+CAK+IASEN+PVRWTTPL
Sbjct: 786 ERDFITDDKLLFSAACYAAKVTLSALEEMFQAARSIMSWLGDCAKVIASENEPVRWTTPL 845
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPVVQPY K RH V+TSLQ+L LQRE+ KV+VKRQ+TAFPPNFVHSLDGSHMMMTAVA
Sbjct: 846 GLPVVQPYWKQSRHLVRTSLQVLALQRESNKVLVKRQKTAFPPNFVHSLDGSHMMMTAVA 905
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
C+ AGL FAGVHDSYWTHACDVD+M+RILR KFVELY MPI ENLL+SFQ SFP LVFPP
Sbjct: 906 CKLAGLNFAGVHDSYWTHACDVDDMSRILRLKFVELYSMPILENLLESFQTSFPTLVFPP 965
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LP+RGDFDL+EVL SPYFFN
Sbjct: 966 LPDRGDFDLQEVLESPYFFN 985
>gi|195970381|gb|ACG60670.1| hypothetical protein BoB028L01.020 [Brassica oleracea var.
alboglabra]
Length = 951
Score = 1261 bits (3263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/991 (62%), Positives = 756/991 (76%), Gaps = 47/991 (4%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYS---FLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRI 103
MWRN+ +A +L KPFS + S F G L V+ +++ + +
Sbjct: 1 MWRNIFGRA-TLRKIKPFSDSTSATHFRGFISSINLSGGVR-----------NQLATNPV 48
Query: 104 GEILNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKK 163
E +GR + VL N F RG AT A+ + S D S +E+ EL+ M+K
Sbjct: 49 NE-------LGRLT-SVLHNHPF-AFRGLATAAQTIDSDDS---SSGSDEVNELMSAMEK 96
Query: 164 EEQREGENG--SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQ 221
E +R + + + +V GMG+ KY LK RQVK+ETE WEKAA E +E++ DMCEQ
Sbjct: 97 ETERVRKKARLAAKQPMKVVAGMGAQKYYSLKQRQVKLETEEWEKAAKECQEIIEDMCEQ 156
Query: 222 KLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
KLAPNLPY+KSLFLGWFEPLRDAI + + ++ K K+ YA Y +QLPADMMAVITMHK+
Sbjct: 157 KLAPNLPYVKSLFLGWFEPLRDAIQADLDGFKVKKGKIPYASYMEQLPADMMAVITMHKM 216
Query: 282 MGLLMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTV 340
MGLLMT E G +VV AA IG+AIEQE RI F++K KKK + E E + S V
Sbjct: 217 MGLLMTNAEGVGVVKVVNAATQIGEAIEQEARITSFMKKAKKKKNVVDDESEAVNASGEV 276
Query: 341 -TTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ 399
T E KL+K++ L+KK K+ VR IVK D FK WGQ+A+ KVG+R+I+LL +TAYIQ
Sbjct: 277 ETKETLKLKKQINTLLKKHKVRQVREIVKAHDSFKSWGQEAQVKVGARLIQLLMETAYIQ 336
Query: 400 SPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYM 459
PA+Q D PP+I PAF + R V+ E K S+KYG IEC+PL+ KGL+++ARHMVIPY+
Sbjct: 337 PPAEQFDDGPPEIRPAFKQSSRIVTIENKKLSRKYGCIECDPLIRKGLDKSARHMVIPYL 396
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKW 519
PML+PP WTGYD+GAHFFLPSY+MRTHGAKQQR +KRTPK QLEPVF+ L+TLGNTKW
Sbjct: 397 PMLIPPQNWTGYDQGAHFFLPSYIMRTHGAKQQRIAIKRTPKAQLEPVFQGLNTLGNTKW 456
Query: 520 RVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRER 579
R+N +VLS++DRIW+ GGR+ LVDR+DVP+PE+P++ED+ ++++W+WK++ KEN ER
Sbjct: 457 RINKKVLSLVDRIWANGGRVGGLVDRDDVPIPEEPDSEDQEEIKQWKWKMKEANKENSER 516
Query: 580 HSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 639
HSQRCD+ELKL VARKMKDEEGFY+PHNVDFRGRAYPMHPYLNHLGSDLCRGILEF EG+
Sbjct: 517 HSQRCDVELKLEVARKMKDEEGFYFPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFCEGK 576
Query: 640 TLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAED 699
LG+SGL WLKIH+ANLY GGVDK +++ R+AF E+HL+DIFDS+D+PLEG+RWWL AED
Sbjct: 577 PLGESGLRWLKIHIANLYGGGVDKFAYKDRVAFAESHLEDIFDSSDRPLEGKRWWLNAED 636
Query: 700 PFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVARE 759
PFQCLA C+NL+EALRS PE +SHIP+HQDGSCNGLQHYAALGRD +GAAAVNL E
Sbjct: 637 PFQCLAACMNLSEALRSPFPEAAVSHIPIHQDGSCNGLQHYAALGRDQIGAAAVNLFTGE 696
Query: 760 KPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYI 819
KPADVY+ IAARVL I+++DA+ DP FP+A AKL+L QVDRKLVKQTVMTSVYGVTY
Sbjct: 697 KPADVYADIAARVLNIMRQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYS 756
Query: 820 GARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS 879
GARDQIK+RLKERGA ++++ F ASCYAA+VTL AL EMF+AAR IMSW GECAKIIAS
Sbjct: 757 GARDQIKKRLKERGAFADDSQNFHASCYAARVTLKALEEMFEAARAIMSWFGECAKIIAS 816
Query: 880 ENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSL 939
+N+ V WTTPLGLPVVQPYRK RH VM ++Q TAF PNFVHSL
Sbjct: 817 QNKAVCWTTPLGLPVVQPYRKNERHL----------------VMARKQMTAFAPNFVHSL 860
Query: 940 DGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
DGSHMMMTAVAC KAGL+FAGVHDS+WTHACDV+ MN ILREKFVELY+ PI ENLL+SF
Sbjct: 861 DGSHMMMTAVACNKAGLSFAGVHDSFWTHACDVELMNNILREKFVELYDKPILENLLESF 920
Query: 1000 QKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
QKSFP L FPPLPERGDFDLREV+ SPYFFN
Sbjct: 921 QKSFPGLTFPPLPERGDFDLREVIRSPYFFN 951
>gi|225445794|ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
vinifera]
Length = 979
Score = 1258 bits (3256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/860 (69%), Positives = 705/860 (81%), Gaps = 9/860 (1%)
Query: 173 SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKS 232
+G+N + R Y +L+ RQVK ETEAWE+ EYRE+ +MCE+KLAPNLPY+K+
Sbjct: 127 TGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKA 186
Query: 233 LFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG 292
LFLGWFEPLR+AI KEQ R K K AYAP+ + LPAD MAVI MHK+MGL+M G E G
Sbjct: 187 LFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEG 246
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKN-KEDEEGDESNTVTTEQEKLRKKV 351
RVVQAA IG AIEQEVRIH FLEKTK K +EG E+E LRK+V
Sbjct: 247 CVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEG------LREKEILRKRV 300
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
I+K+K+ V+++VK ++ PWG+D +AK+GSR+IELLT+TAY+Q+P +Q AD PPD
Sbjct: 301 KSFIRKKKIIEVQKLVKN-EEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPD 359
Query: 412 IFPAFTHALRTVSKET-KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTG 470
+ PAF H +TV+KE+ + +KYGVIEC+PLVL GL+RTA+HMVIPY+PML+PP KW G
Sbjct: 360 VRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKG 419
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKG + FLPSYVMRTHG+++Q+D VK P++QL+ VFEALDTLGNTKWR+N RVLSV++
Sbjct: 420 YDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVE 479
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
IW+ GG L LVDR +VPLPEKP TED +++ W+W R KK N+ERHS RCD E+KL
Sbjct: 480 SIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKL 539
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
SVARKMKDEEGFYYPHN+DFRGRAYPMHP+LNHL SDLCRG+LEFAEGR LGKSGL WLK
Sbjct: 540 SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLK 599
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
I LANLYAGGV+KLS++GRLAF +NHLDD+FDSAD PL G RWWL AEDPFQCLA CINL
Sbjct: 600 IQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINL 659
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
+EALRSSSP T ISH+P+HQDGSCNGLQHYAALGR++L A+AVNLVA EKPADVYS IAA
Sbjct: 660 SEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAA 719
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RV I++RD+ +DPA P AL AK+L+ QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRL
Sbjct: 720 RVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLA 779
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
E+G +E LF A+CYAAKVTL ALGE+FQAAR IM+WLGECAK+IASENQPV+WTTPL
Sbjct: 780 EKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPL 839
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPV+QPY K RH ++TSLQ+L LQRE V++++QRTAFPPNFVHSLDGSHMMMTAVA
Sbjct: 840 GLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVA 899
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
CR AGL FAGVHDS+WTHACDVD+MN+ILREKFVELY MPI ENLL+SFQ S P L FPP
Sbjct: 900 CRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPP 959
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LP+RG+FDLREVL SPYFFN
Sbjct: 960 LPDRGNFDLREVLESPYFFN 979
>gi|224143911|ref|XP_002325119.1| predicted protein [Populus trichocarpa]
gi|222866553|gb|EEF03684.1| predicted protein [Populus trichocarpa]
Length = 882
Score = 1239 bits (3206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/844 (69%), Positives = 694/844 (82%), Gaps = 6/844 (0%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
KY +L+ RQ++ ETEAWE+ A+EYR L+ +MCE+KLAPNLPY+K L LGWFEPL++AI K
Sbjct: 44 KYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEK 103
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
EQ+ + K K A++P + LPAD MAVI MHK+MGLLM G E G RVVQAA IG AI
Sbjct: 104 EQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAI 163
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
EQEVRIH FLEKTK N + K E E T+ E+E LRK+V LI++++L V+ +V
Sbjct: 164 EQEVRIHNFLEKTK--NYQRKKTMHEVQE--TMDKEKEVLRKRVNSLIRRKRLMEVQNLV 219
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
K QD+ KPW + +AK+GSR+IELLT+TAY+Q P +Q D PPD+ PAF H +T++K
Sbjct: 220 K-QDETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNP 278
Query: 428 -KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT 486
+ KKYGVIEC+PL+L GL+ TA+HM+IPY PMLVPP KW GYDKG H FLPSYVMRT
Sbjct: 279 GQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRT 338
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
HG++QQ+ V+ P KQ++ VFEALDTLGNTKWRVN R+L V++RIW+ GG +A LVDR
Sbjct: 339 HGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDRE 398
Query: 547 DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
D+P+PEKP ++D +++KW+W VR KK N+ERHSQRCD ELKLSVARK+KDEEGFYYPH
Sbjct: 399 DIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPH 458
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
N+DFRGRAYPMHP+L HL SDLCRG+LEF EGR LGKSGL WLKIHLANLY+GGV+KLSH
Sbjct: 459 NLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSH 518
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
+GRLAF ENHL +IFDSA P+ G+RWWLKAEDPFQCLA CINL+EAL S+SP T ISH+
Sbjct: 519 DGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHL 578
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
P+HQDGSCNGLQHYAALGRDTL AAAVNLVA EKP+DVYS IA RV II+RD+ +DPA
Sbjct: 579 PIHQDGSCNGLQHYAALGRDTLEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPAT 638
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
P AL AK+L+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G ++ LF A+C
Sbjct: 639 NPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAAC 698
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
Y AKVTLTALGE+FQAAR IMSWLG+CAKIIASE+QPV+WTTPLGLPVVQPY K RH +
Sbjct: 699 YTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLI 758
Query: 907 KTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
KTSLQIL LQRE V V++QRTAFPPNFVHSLDGSHMMMTAVACR AGL FAGVHDS+W
Sbjct: 759 KTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFW 818
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSP 1026
THA DVD MNRILREKFVELY MPI ENLL+ FQ S+P L FPPLPERG+FDL++VL SP
Sbjct: 819 THATDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSP 878
Query: 1027 YFFN 1030
YFFN
Sbjct: 879 YFFN 882
>gi|297743676|emb|CBI36559.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/815 (71%), Positives = 678/815 (83%), Gaps = 9/815 (1%)
Query: 218 MCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVIT 277
MCE+KLAPNLPY+K+LFLGWFEPLR+AI KEQ R K K AYAP+ + LPAD MAVI
Sbjct: 1 MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 60
Query: 278 MHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKN-KEDEEGDE 336
MHK+MGL+M G E G RVVQAA IG AIEQEVRIH FLEKTK K +EG
Sbjct: 61 MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEG-- 118
Query: 337 SNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA 396
E+E LRK+V I+K+K+ V+++VK ++ PWG+D +AK+GSR+IELLT+TA
Sbjct: 119 ----LREKEILRKRVKSFIRKKKIIEVQKLVKNEE-ITPWGRDTQAKLGSRLIELLTETA 173
Query: 397 YIQSPADQLADAPPDIFPAFTHALRTVSKET-KGGSKKYGVIECNPLVLKGLERTARHMV 455
Y+Q+P +Q AD PPD+ PAF H +TV+KE+ + +KYGVIEC+PLVL GL+RTA+HMV
Sbjct: 174 YVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMV 233
Query: 456 IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLG 515
IPY+PML+PP KW GYDKG + FLPSYVMRTHG+++Q+D VK P++QL+ VFEALDTLG
Sbjct: 234 IPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLG 293
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575
NTKWR+N RVLSV++ IW+ GG L LVDR +VPLPEKP TED +++ W+W R KK
Sbjct: 294 NTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKI 353
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
N+ERHS RCD E+KLSVARKMKDEEGFYYPHN+DFRGRAYPMHP+LNHL SDLCRG+LEF
Sbjct: 354 NQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 413
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
AEGR LGKSGL WLKI LANLYAGGV+KLS++GRLAF +NHLDD+FDSAD PL G RWWL
Sbjct: 414 AEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWL 473
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
AEDPFQCLA CINL+EALRSSSP T ISH+P+HQDGSCNGLQHYAALGR++L A+AVNL
Sbjct: 474 TAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNL 533
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
VA EKPADVYS IAARV I++RD+ +DPA P AL AK+L+ QVDRKLVKQTVMTSVYG
Sbjct: 534 VAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYG 593
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VTYIGAR+QIKRRL E+G +E LF A+CYAAKVTL ALGE+FQAAR IM+WLGECAK
Sbjct: 594 VTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAK 653
Query: 876 IIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNF 935
+IASENQPV+WTTPLGLPV+QPY K RH ++TSLQ+L LQRE V++++QRTAFPPNF
Sbjct: 654 VIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNF 713
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
VHSLDGSHMMMTAVACR AGL FAGVHDS+WTHACDVD+MN+ILREKFVELY MPI ENL
Sbjct: 714 VHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENL 773
Query: 996 LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
L+SFQ S P L FPPLP+RG+FDLREVL SPYFFN
Sbjct: 774 LESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 808
>gi|224088334|ref|XP_002308414.1| predicted protein [Populus trichocarpa]
gi|222854390|gb|EEE91937.1| predicted protein [Populus trichocarpa]
Length = 982
Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/844 (68%), Positives = 688/844 (81%), Gaps = 6/844 (0%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
KY +L+ RQ++ ETEAWE+ A EY L+ +MCE+KLAPNLPY+KSLFLGWFEPL++AI +
Sbjct: 144 KYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIER 203
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
EQ+ + K K A++P + LPAD MAVI MHK+MGL+M G E G RVVQAA IG AI
Sbjct: 204 EQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAI 263
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
EQEVRIH FLEKTK K D + ++ E+E LRK+V LI++++L V+ +V
Sbjct: 264 EQEVRIHNFLEKTKNHQRKKTMHDVQ----ESMDKEKEMLRKRVNSLIRRKRLMEVQNLV 319
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
QD+ KPW +D +AK+GSR+IELLT+TAY+Q P DQ PPD+ PAF H ++V+K
Sbjct: 320 I-QDETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNP 378
Query: 428 -KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT 486
+ KKYGVIEC+PL+L GL+ TA+HM+IPY PMLVPP KW GYDKG H FLPSY+MRT
Sbjct: 379 GQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRT 438
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
HG++QQ+D V+ P KQ++ VFEALDTLGNTKWRVN +VL V++RIW+ GG A LV+R
Sbjct: 439 HGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRG 498
Query: 547 DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
D+P+PEK ++D +++KW+W VR KK N+ERHSQRCD ELKLSVARK+KDEEGFYYPH
Sbjct: 499 DIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPH 558
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
N+DFRGRAYPMHP+L HL SDLCRG+LEFAEGR LGKSGL WLKIHLANLY+GGV+KLSH
Sbjct: 559 NLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSH 618
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
+GRLAF ENHL +IFDSA+ P+ G+RWWL AEDPFQCLA CINL+EAL+S+SP T ISH+
Sbjct: 619 DGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHL 678
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
P+HQDGSCNGLQHYAALGRD+ AAAVNLVA EKP+DVYS IA RV II+RD+ +DPA
Sbjct: 679 PIHQDGSCNGLQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPAT 738
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
P AL AK+L+ +VDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G ++ LF A+C
Sbjct: 739 NPHALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAAC 798
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
YAAKVTLTALGE+FQAAR IM WLG+CAK+IASE+QPVRWTTPLGLPVVQPY K RH +
Sbjct: 799 YAAKVTLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLI 858
Query: 907 KTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
+TSLQ+L LQRE V V++QRTAFPPNFVHSLDGSHMMMTAVACR A L FAGVHDS+W
Sbjct: 859 RTSLQVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFW 918
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSP 1026
THA D D MNRILREKFVELY MPI ENLL+ FQ S+P L FP LPERG+FDL+EVL SP
Sbjct: 919 THARDADLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSP 978
Query: 1027 YFFN 1030
YFFN
Sbjct: 979 YFFN 982
>gi|59800202|sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 3; Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName: Full=DNA-directed RNA polymerase 3A, chloroplastic; AltName:
Full=NictaRpoT3-syl; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 3A; Flags: Precursor
gi|21425641|emb|CAC82576.3| phage-type RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase [Nicotiana tabacum]
gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 977
Score = 1207 bits (3124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/837 (68%), Positives = 681/837 (81%), Gaps = 8/837 (0%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMA 255
Q+K ETEAWE+ EYREL +MCE+KLAPNLPY+K L LGWFEPLR AI KEQ
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTV 206
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA-RVVQAACIIGDAIEQEVRIH 314
KH+ A+AP+ D LPAD MAVI MHKLMGLLM GG+ R +VVQAA IG A+E EVRIH
Sbjct: 207 KHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIH 266
Query: 315 KFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
FLEKTKK + + D S E LRK+V LIK+ ++ VR+++K ++ +
Sbjct: 267 NFLEKTKKLQKHMTGAQSQEDMSR----ETMILRKRVKSLIKRNRVVEVRKLMKSEEP-E 321
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET-KGGSKK 433
WG+D +AK+G R++ELLT+TAY+Q P DQ AD PPDI PAF H R +++ K KK
Sbjct: 322 SWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKK 381
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
YGVIEC+PLV+ G++RT + M+IPY+PMLVPP KW GYDKG + FLPSY+MRTHG+++Q+
Sbjct: 382 YGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQ 441
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
D V+ P KQ++ V+EALDTLG+TKWRVN R+LSV++ IW+ GG +A LVDR DVP+PE
Sbjct: 442 DAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL 501
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
++D +++KW+W+VR KK N+E HSQRCD ELKLSVARK+KDEEGFYYPHN+DFRGR
Sbjct: 502 -HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGR 560
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYPMHP+LNHL SDLCRGILEFAEGR LGKSGL WLKIHLA+LYAGG++KL ++ RLAF
Sbjct: 561 AYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFV 620
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
ENH+DDI DSA+ PL G RWWL AEDPFQCLA CINL+EAL+SSSP T SH+P+HQDGS
Sbjct: 621 ENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGS 680
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD++ AAAVNLVA +KPADVY+ IA RV II+ D+ +DPA P+AL A
Sbjct: 681 CNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLA 740
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
KLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G ++ LF ASCYAAKVTL
Sbjct: 741 KLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTL 800
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
ALGE+FQAARG M+WLG+CAK+IASENQPVRWTTPLGLPVVQPY K RH ++TSLQ+L
Sbjct: 801 AALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVL 860
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
LQRE + V V++QRTAFPPNFVHSLDGSHMMMTAVACR AGL FAGVHDS+WTHACDVD
Sbjct: 861 ALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVD 920
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+MNRILREKFVELY MPI E+LL+SFQ S+P L FPPLP+RGDFDL EVL SPYFFN
Sbjct: 921 QMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977
>gi|449506262|ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
sativus]
Length = 975
Score = 1201 bits (3108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/845 (67%), Positives = 688/845 (81%), Gaps = 10/845 (1%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
KY +L+ RQ+K ETEAWEK EY+EL +MCE+KLAPNLPY+K LFLGWFEPL++AI +
Sbjct: 139 KYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEE 198
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
EQ+ R K K A+AP+ + L AD MAVI M+K+MGLLM + G +VVQAA IG AI
Sbjct: 199 EQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAI 258
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
EQEVRI LEK + TK + D E +T E+E LRK+V LI+++KL V++++
Sbjct: 259 EQEVRIQSILEKARSNQRTKVRADTE-----CLTKEKEVLRKQVNGLIRRRKLKEVQKLL 313
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
K +++FK WG+D +AK+GSR+IELL ++A+IQ P Q AD+PPDI PAF H + V+K T
Sbjct: 314 K-KEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAK-T 371
Query: 428 KGGS--KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
G + KKYGV+EC+P+VL GL+RTA+HM+IPY+PMLVPP KW GYDKG HFFLPSYVMR
Sbjct: 372 PGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMR 431
Query: 486 THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
THG+ +Q+D +K KQ++ VFEALD LG+TKWRVN VLSV++ +W+ GG A LVDR
Sbjct: 432 THGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDR 491
Query: 546 NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
DVP+PEKP D ++++W+W ++ KK N+E HSQRCD+ELKLSVARKMKDEEGFYYP
Sbjct: 492 KDVPIPEKP-LGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYP 550
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HN+DFRGRAYPMHP+LNHL SDLCRG+LEFAEGR LGKSGLHWLKIHLANLYAGGV+KLS
Sbjct: 551 HNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLS 610
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
++ RLAF ++HLD+IFDSA P+ G RWWL AEDPFQCLA C+NL+EAL+SS+P T IS+
Sbjct: 611 YDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISY 670
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
+P+HQDGSCNGLQHYAALGRDTL AAAVNLVA EKPADVYS IAARV I+ RDA +DP
Sbjct: 671 LPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPT 730
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
P+A AKLL+ QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRL+E+G ++ F AS
Sbjct: 731 TNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRAS 790
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHT 905
CYAAKVTL+ALGE+F+AARGIM WLG+CAK+IA +NQPVRWTTPLGLPVVQPY K RH
Sbjct: 791 CYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHL 850
Query: 906 VKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
++TSLQ+L LQRE V V++QRTAFPPNFVHSLDGSHMM+TA+ACR AGL FAGVHDS+
Sbjct: 851 IRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSF 910
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGS 1025
WTHACDVD MN ILREKFVELY MP+ E+LL+ F+ ++P L FP LP RGDFDL+EVL S
Sbjct: 911 WTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKS 970
Query: 1026 PYFFN 1030
PYFFN
Sbjct: 971 PYFFN 975
>gi|449454095|ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
sativus]
Length = 975
Score = 1198 bits (3100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/845 (67%), Positives = 687/845 (81%), Gaps = 10/845 (1%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
KY +L+ RQ+K ETEAWEK EY+EL +MCE+KLAPNLPY+K LFLGWFEPL++AI +
Sbjct: 139 KYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEE 198
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
EQ+ R K K A+AP+ + L AD MA I M+K+MGLLM + G +VVQAA IG AI
Sbjct: 199 EQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAI 258
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
EQEVRI LEK + TK + D E +T E+E LRK+V LI+++KL V++++
Sbjct: 259 EQEVRIQSILEKARSNQRTKVRADTE-----CLTKEKEVLRKQVNGLIRRRKLKEVQKLL 313
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
K +++FK WG+D +AK+GSR+IELL ++A+IQ P Q AD+PPDI PAF H + V+K T
Sbjct: 314 K-KEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAK-T 371
Query: 428 KGGS--KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
G + KKYGV+EC+P+VL GL+RTA+HM+IPY+PMLVPP KW GYDKG HFFLPSYVMR
Sbjct: 372 PGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMR 431
Query: 486 THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
THG+ +Q+D +K KQ++ VFEALD LG+TKWRVN VLSV++ +W+ GG A LVDR
Sbjct: 432 THGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDR 491
Query: 546 NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
DVP+PEKP D ++++W+W ++ KK N+E HSQRCD+ELKLSVARKMKDEEGFYYP
Sbjct: 492 KDVPIPEKP-LGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYP 550
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HN+DFRGRAYPMHP+LNHL SDLCRG+LEFAEGR LGKSGLHWLKIHLANLYAGGV+KLS
Sbjct: 551 HNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLS 610
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
++ RLAF ++HLD+IFDSA P+ G RWWL AEDPFQCLA C+NL+EAL+SS+P T IS+
Sbjct: 611 YDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISY 670
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
+P+HQDGSCNGLQHYAALGRDTL AAAVNLVA EKPADVYS IAARV I+ RDA +DP
Sbjct: 671 LPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPT 730
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
P+A AKLL+ QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRL+E+G ++ F AS
Sbjct: 731 TNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRAS 790
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHT 905
CYAAKVTL+ALGE+F+AARGIM WLG+CAK+IA +NQPVRWTTPLGLPVVQPY K RH
Sbjct: 791 CYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHL 850
Query: 906 VKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
++TSLQ+L LQRE V V++QRTAFPPNFVHSLDGSHMM+TA+ACR AGL FAGVHDS+
Sbjct: 851 IRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSF 910
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGS 1025
WTHACDVD MN ILREKFVELY MP+ E+LL+ F+ ++P L FP LP RGDFDL+EVL S
Sbjct: 911 WTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKS 970
Query: 1026 PYFFN 1030
PYFFN
Sbjct: 971 PYFFN 975
>gi|449493526|ref|XP_004159332.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like, partial [Cucumis
sativus]
Length = 764
Score = 1188 bits (3073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/772 (73%), Positives = 648/772 (83%), Gaps = 14/772 (1%)
Query: 260 AYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG-RARVVQAACIIGDAIEQEVRIHKFLE 318
++A YF LPADMMAVITMHKLMGLLM+ E G RV QAA IG+AIE EVRI F E
Sbjct: 6 SHALYFHLLPADMMAVITMHKLMGLLMSDIEGGGSVRVTQAASGIGEAIENEVRIRNFFE 65
Query: 319 KTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQ 378
KTKK+ E + +KLRKK+T L+K+QKL V IVK DD KPWG
Sbjct: 66 KTKKQPEQ-------------LAEGHDKLRKKLTKLMKQQKLQKVNFIVKNHDDSKPWGT 112
Query: 379 DARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIE 438
DA KVG R+I+LL +TAYIQ P DQ+ DAPPD+ PAF H+L+T KE++ K+YGVIE
Sbjct: 113 DAHVKVGCRLIQLLIETAYIQPPVDQIGDAPPDLRPAFVHSLKTSLKESQRLGKRYGVIE 172
Query: 439 CNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR 498
C+PLV +G+ +TA HM+IPYMPMLVPP KWTGYD+GAHFFLPSYVMR GA+QQR+ VKR
Sbjct: 173 CDPLVYRGMVKTAGHMIIPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGARQQREAVKR 232
Query: 499 TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETED 558
KKQL PVF+ALD LG+TKWRVN RVLSV+++IW+ GGRLADLVDR D+PLPE+P ED
Sbjct: 233 ASKKQLGPVFKALDILGSTKWRVNKRVLSVIEKIWASGGRLADLVDREDMPLPEQPMVED 292
Query: 559 EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMH 618
EA++R W+WKV+ VK+EN ERHSQRCD ELKL+VARKMK+EEGFYYPHN+DFRGRAYPMH
Sbjct: 293 EAEIRNWKWKVKAVKRENSERHSQRCDTELKLAVARKMKEEEGFYYPHNLDFRGRAYPMH 352
Query: 619 PYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLD 678
P+LNH+GSD CRG LEFAEGR LG+SGL WLKIHLANLYAGGVDKLS++ R++FTENHLD
Sbjct: 353 PHLNHIGSDFCRGTLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLD 412
Query: 679 DIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQ 738
+IFDSAD+PLEG RWWL AEDPFQCLAVCI+L+EALRS SPET ISH+PVHQDGSCNGLQ
Sbjct: 413 EIFDSADRPLEGSRWWLGAEDPFQCLAVCIDLSEALRSPSPETTISHMPVHQDGSCNGLQ 472
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS 798
HYAALGRD LGA AVNL A +KPADVYSGIA+RVL I++ DA +DPA P+AL A+LL++
Sbjct: 473 HYAALGRDKLGAEAVNLAAGDKPADVYSGIASRVLDIMRSDAAKDPASNPNALHARLLIN 532
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGE 858
QVDRKLVKQTVMTSVYGVTY GA+DQI++RLKER + E LF ASCYAAK TLTA+GE
Sbjct: 533 QVDRKLVKQTVMTSVYGVTYAGAKDQIRQRLKERSSIENERHLFTASCYAAKTTLTAIGE 592
Query: 859 MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE 918
MF+AA+ IM+WLGECAK+IASENQ VRWTTPLGLPVVQPYRKLGRH VKTSLQ+L+LQRE
Sbjct: 593 MFEAAKSIMNWLGECAKVIASENQAVRWTTPLGLPVVQPYRKLGRHLVKTSLQMLSLQRE 652
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
T+KVM RQRTAFPPN++HSLD SHMMMTA+AC++AGL FAGVHDSYWTHACDVDEMN I
Sbjct: 653 TDKVMAMRQRTAFPPNYIHSLDSSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNII 712
Query: 979 LREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
LR+KFVELYE PI ENLL FQKSFP L FPPLP GDFDL+EVL S YFFN
Sbjct: 713 LRKKFVELYEAPILENLLKDFQKSFPNLKFPPLPVGGDFDLKEVLQSTYFFN 764
>gi|62750825|emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 989
Score = 1187 bits (3072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/844 (65%), Positives = 680/844 (80%), Gaps = 8/844 (0%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
KY +L+ RQ+K ETEAWE EYRE + +M ++KLAPNLP +K+LFLGWFEPL+ AI K
Sbjct: 153 KYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEK 212
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
EQ+ R K K Y + D LPAD MAVI MHK+M LLM G + G R+VQAA IG AI
Sbjct: 213 EQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHKMMSLLMVGNDAGCVRLVQAALQIGTAI 272
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
EQE++IH FLEKTK N KN D D + E+E R +V LIK+++L ++V
Sbjct: 273 EQEIKIHSFLEKTK--NIRKNASDLPED----LLKEKEIQRNRVKSLIKRKRLFEAAKLV 326
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
+D K W QD +AK+GSR+IELL TAYIQ P Q AD PPD+ PAF H + ++ E
Sbjct: 327 TSEDS-KSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPPDVRPAFRHKFKILNNEL 385
Query: 428 -KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT 486
+ K+YGVIEC+PLVLKG++R+AR+M+IPY+PML+PP W GYDKG + FLPSYVMRT
Sbjct: 386 GQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKGYDKGGYLFLPSYVMRT 445
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
HG+++Q+D +++TP +Q++ VFEAL+TLG+TKWR+N +VL V++ +W+ GG + LV+ +
Sbjct: 446 HGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVVENLWASGGNIGGLVNCD 505
Query: 547 DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
DVPLPEKP TED A++ W+W VR KK NRERH+ RCD+ELK+SVA+KMKDEEGFYYPH
Sbjct: 506 DVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDVELKISVAQKMKDEEGFYYPH 565
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
N+DFRGRAYPMHP+LNHL SDLCRG+LEFA GR LGK+GLHWLKIHLAN+YAGGVDKLS+
Sbjct: 566 NLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGLHWLKIHLANVYAGGVDKLSY 625
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
E R AF ENHL+++FDSA P+ G RWWL AEDPFQCLA CI+LT AL SSSP +FIS++
Sbjct: 626 EARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQCLAACIDLTGALNSSSPHSFISYL 685
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
P+HQDGSCNGLQHYAALGRD+ AAAVNLVA E+PADVYS IA RV I+++D+++DP
Sbjct: 686 PIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEEPADVYSEIAVRVREIMEKDSRKDPKT 745
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
P A+ AK+L+ QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G ++ LF A+C
Sbjct: 746 DPHAVLAKVLVDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGVITDDRLLFSAAC 805
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
Y+AKVT++ALG++FQAARGIM WLG+CAK+IASENQPVRWTTPLGLPVVQPY K RH +
Sbjct: 806 YSAKVTMSALGQLFQAARGIMDWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSKRHLI 865
Query: 907 KTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
KTSLQ+L LQ+E E + VK+QRTAFPPN+VHSLDG+HMMMTAVACR AGL FAGVHDS+W
Sbjct: 866 KTSLQVLALQQEGEGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACRDAGLQFAGVHDSFW 925
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSP 1026
THACDV++MN+ILR KFVELY MPI ENLL+SFQ ++P FPPLPERGDFDL EVL SP
Sbjct: 926 THACDVEKMNQILRVKFVELYNMPILENLLESFQTAYPASTFPPLPERGDFDLEEVLESP 985
Query: 1027 YFFN 1030
YFFN
Sbjct: 986 YFFN 989
>gi|88933967|sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 3B; Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase [Nicotiana tabacum]
Length = 977
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/837 (68%), Positives = 683/837 (81%), Gaps = 7/837 (0%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMA 255
Q+K ETEAWE+ EYREL +MCE+KLAPNLPY+K L LGWFEPLR AI KEQ
Sbjct: 146 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTV 205
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA-RVVQAACIIGDAIEQEVRIH 314
KH+ A+AP+ D LPAD MAVI MHKLMGLLM GG+ R +VVQAA IG A+E EVRIH
Sbjct: 206 KHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIH 265
Query: 315 KFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
FLEKTKK + + D S E LRK+V LIK+ ++ VR+++K ++ +
Sbjct: 266 NFLEKTKKLQKHMTGAQSQEDMSK----ETMILRKRVKSLIKRNRVVEVRKLMKSEEP-E 320
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET-KGGSKK 433
WG+D +AK+G R++ELLT+TAY+Q P DQ AD PPDI PAF H + +++ K KK
Sbjct: 321 SWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKK 380
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
YGVIEC+PLV+ G++RT + M+IPY+PMLVPP KW GYDKG + FLPSY+MRTHG+++Q+
Sbjct: 381 YGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQ 440
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
D V+ P KQ++ V+EALDTLG+TKWRVN R+L+V++ IW+ GG +A LVDR DVP+PE
Sbjct: 441 DAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPEL 500
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
++D +++KW+WKVR KK N+E HSQRCD ELKLSVARK+KDEEGFYYPHN+DFRGR
Sbjct: 501 SNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGR 560
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYPMHP+LNHL SDLCRGILEFAEGR LGKSGL WLKIHLA+LYAGGV+KL ++ RLAF
Sbjct: 561 AYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFV 620
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
ENH+ DI DSA+ PL G RWWL AEDPFQCLA CINL+EAL+SSSP T ISH+P+HQDGS
Sbjct: 621 ENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGS 680
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD++ AAAVNLVA EKPADVY+ IA RV II+ D+ +DPA+ P+AL A
Sbjct: 681 CNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLA 740
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
KLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G ++ LF ASCYAAKVTL
Sbjct: 741 KLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTL 800
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
ALGE+FQAARG M+WLG+CAK+IA ENQPVRWTTPLGLPVVQPY K RH ++TSLQIL
Sbjct: 801 AALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQIL 860
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
LQRE + V V++QRTAFPPNFVHSLDGSHMMMTAVACR AGL FAGVHDS+WTHACDVD
Sbjct: 861 ALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVD 920
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+MNRILREKFVELY +PI E+LL++FQKS+P L FPPLP+RGDF+LREVL SPYFFN
Sbjct: 921 QMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977
>gi|15224093|ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|3914826|sp|O24600.1|RPOT3_ARATH RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
Precursor
gi|2330560|emb|CAA69972.1| chloroplast single-subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana]
gi|2330564|emb|CAA69717.1| chloroplast single-subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana]
gi|4115372|gb|AAD03373.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana]
gi|110739160|dbj|BAF01496.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana]
gi|330252437|gb|AEC07531.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 993
Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/848 (65%), Positives = 681/848 (80%), Gaps = 17/848 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K+ L+ RQVK ETEAWE+ +EYR+L +MCE+ LAPNLPY+K +FLGWF+PL+D I +
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217
Query: 248 EQ--ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
EQ ++ + K + AYAP+ + LPAD MAVI MHK+MGL+M+G E G +VVQAA IG
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGI 277
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
AIEQEVRIH FL++T+K N ++E+ E++ LRK+V LI+++++ +
Sbjct: 278 AIEQEVRIHNFLKRTRKNNAGDSQEE---------LKEKQLLRKRVNSLIRRKRIIDALK 328
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+VK + KPWG+ +AK+GSR++ELL + AY+Q P Q D+ P+ PAF H +TV+K
Sbjct: 329 VVKSEGT-KPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTK 387
Query: 426 ETKGGSK---KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
GSK +YGVIEC+ L+L GL+++A+HM+IPY+PMLVPP +W GYDKG + FLPSY
Sbjct: 388 YP--GSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSY 445
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+MRTHG+K+Q+D +K K VFEALDTLGNTKWRVN +L V++R+W+ GG +A L
Sbjct: 446 IMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGL 505
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
V+R DVP+PEKP +ED +L+ W+W R K NRERHS RCD+ELKLSVARKMKDEEGF
Sbjct: 506 VNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGF 565
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGR LGKSGLHWLKIHLANLYAGGV+
Sbjct: 566 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVE 625
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLSH+ RLAF ENHLDDI DSA+ P+ G+RWWLKAEDPFQCLA C+ LT+AL+S SP +
Sbjct: 626 KLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSV 685
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISH+P+HQDGSCNGLQHYAALGRD+ AAAVNLVA EKPADVYS I+ RV I+++D+ +
Sbjct: 686 ISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSK 745
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP P A AK+L++QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G +E LF
Sbjct: 746 DPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLF 805
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
A+CY+AKVTL ALGE+F+AAR IMSWLG+CAKIIAS+N PVRW TPLGLPVVQPY +
Sbjct: 806 AAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSE 865
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH ++TSLQ+L LQRE V V++QRTAFPPNFVHSLDG+HMMMTAVACR+AGL FAGVH
Sbjct: 866 RHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVH 925
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVD MNRILREKFVELY PI E+LL SFQ+S+P LVFPP+P+RGDFDL+EV
Sbjct: 926 DSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEV 985
Query: 1023 LGSPYFFN 1030
L S YFFN
Sbjct: 986 LKSQYFFN 993
>gi|297825331|ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
Length = 990
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/848 (65%), Positives = 682/848 (80%), Gaps = 17/848 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K+ L+ RQVK ETEAWE+ +EYR+L +MCE+ LAPNLPY+K +FLGWF+PL+D I +
Sbjct: 155 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 214
Query: 248 EQ--ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
EQ ++ + K + AYAP+ + LPAD MAVI MHK+MGL+M+G E G +VVQAA IG
Sbjct: 215 EQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGI 274
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
AIEQEVRIH FL++T+K N ++E+ E++ LRK+V LI+++++ +
Sbjct: 275 AIEQEVRIHNFLKRTRKNNAGDSQEE---------LKEKQLLRKRVNSLIRRKRIIDALK 325
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+VK + KPWG+ +AK+GSR++ELL + AY+Q P Q D+ P+ PAF H +TV+K
Sbjct: 326 VVKTEGT-KPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHKFKTVTK 384
Query: 426 ETKGGSK---KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
GSK +YGVIEC+ L+L GL+++A+HM+IPY+PMLVPP +W GYDKG + FLPSY
Sbjct: 385 YP--GSKMVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSY 442
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+MRTHG+K+Q+D ++ K VFEALDTLGNTKWRVN +L V++R+W+ GG +A L
Sbjct: 443 IMRTHGSKKQQDALRDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGL 502
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
V+R DVP+PEKP +ED +++ W+W VR K NRERHS RCD+ELKLSVARKMKDEEGF
Sbjct: 503 VNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGF 562
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGR LGKSGLHWLKIHLANL+AGGV+
Sbjct: 563 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLFAGGVE 622
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLSH+ RLAF ENHLDDI DSA+ P+ G+RWWLKAEDPFQCLA C+ LT+ALRS SP +
Sbjct: 623 KLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALRSPSPYSV 682
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISH+P+HQDGSCNGLQHYAALGRD+ AAAVNLVA EKPADVYS I+ RV I+++D+ +
Sbjct: 683 ISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSK 742
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP P A AK+L++QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G +E LF
Sbjct: 743 DPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLF 802
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
A+CY+AKVTL ALGE+F+AAR IMSWLG+CAKIIAS+N PVRW TPLGLPVVQPY +
Sbjct: 803 AAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSE 862
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH ++TSLQ+L LQRE V V++QRTAFPPNFVHSLDG+HMMMTAVACR+AGL FAGVH
Sbjct: 863 RHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVH 922
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVD MNRILREKFVELY PI E+LL SFQ+S+P LVFPP+P+RGDFDL+EV
Sbjct: 923 DSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEV 982
Query: 1023 LGSPYFFN 1030
L S YFFN
Sbjct: 983 LKSQYFFN 990
>gi|21425669|emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]
Length = 715
Score = 1175 bits (3040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/720 (78%), Positives = 639/720 (88%), Gaps = 7/720 (0%)
Query: 312 RIHKFLEKTKKKNE-TKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ 370
RIH+FLEKTKK N + + E+ GD + E+E+LRKKV L+KKQKL VR+IVK Q
Sbjct: 2 RIHRFLEKTKKSNALSGDLEETPGD----MMKERERLRKKVKILMKKQKLRQVRKIVKQQ 57
Query: 371 DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGG 430
DD KPWGQD KVG R+I++L +TAYIQ P DQL D PPDI PAF H L+TV ET G
Sbjct: 58 DDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKG 115
Query: 431 SKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAK 490
S++YGVI+C+PLV KGL++TARHMVIPYMPMLVPP W GYDKG + FLPSY+MRTHGAK
Sbjct: 116 SRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAK 175
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL 550
QQR+ VKR PKKQLEPVF+ALDTLGNTKWRVN +VL ++DRIW+ GGRLADLVDR DVPL
Sbjct: 176 QQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPL 235
Query: 551 PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDF 610
PE P+TEDEA++RKW+WKV+ VKKEN ERHSQRCDIELKL+VARKMKDE+GFYYPHN+DF
Sbjct: 236 PEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDF 295
Query: 611 RGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRL 670
RGRAYPMHPYLNHLGSDLCRGILEFAEGR LG SGL WLKIHLAN+Y GGVDKLS+EGR+
Sbjct: 296 RGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRV 355
Query: 671 AFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQ 730
AF+ENHL+DIFDSA++PLEG+RWWL AEDPFQCLA CIN+ EALRS SPET IS++P+HQ
Sbjct: 356 AFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQ 415
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
DGSCNGLQHYAALGRD LGAAAVNLVA +KPADVYSGIAARVL I++RDA +DPA P+
Sbjct: 416 DGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNV 475
Query: 791 LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAK 850
+RA+LL++QVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKERG ++ ELF A+CYAAK
Sbjct: 476 MRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAK 535
Query: 851 VTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
TLTALGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPLGLPVVQPYRKLGRH +KTSL
Sbjct: 536 TTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSL 595
Query: 911 QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHAC 970
QILTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+++GL+FAGVHDSYWTHAC
Sbjct: 596 QILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHAC 655
Query: 971 DVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
DVD+MN+ILREKFVELY+ PI ENLL+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 656 DVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 715
>gi|356562547|ref|XP_003549531.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Glycine
max]
Length = 951
Score = 1168 bits (3022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/848 (65%), Positives = 686/848 (80%), Gaps = 12/848 (1%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K +L+ RQ+K ETEA EK EYREL +M E+ L PNLP++K+LFLGWF+PL++AI
Sbjct: 111 KLNLLRRRQIKAETEALEKMVEEYRELEREMREKNLTPNLPHVKALFLGWFDPLKEAIEA 170
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA---RVVQAACIIG 304
EQ+ R KHK A+AP+ D LPA +AVI MHK+MGL+ E+ RA +V AA IG
Sbjct: 171 EQKSKRSKKHKAAFAPHIDSLPAAKLAVIVMHKVMGLVTQ--EYRRAGCVLLVDAAVQIG 228
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR 364
A+EQEVRIHKFLEKT+ ++K+ E GDE +++ +++KLRK V LIK+++L V+
Sbjct: 229 MAVEQEVRIHKFLEKTRSH---QSKKTEAGDE-DSMDNDKQKLRKHVNGLIKRRRLKQVQ 284
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVS 424
++K ++ PWG+D +AK+GSR+IELL +TA++ SP +Q AD PPDI PAF H + +S
Sbjct: 285 MLLKEKES-GPWGRDTQAKLGSRLIELLIETAFVHSPVNQSADTPPDIRPAFRHKFKAIS 343
Query: 425 KETKGGS-KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYV 483
K + K YGVIEC+PLVL G++++ +HM++PYMPMLVPP KW GY+KG H FLPSY+
Sbjct: 344 KNPEQKILKNYGVIECDPLVLAGMDKSVKHMLMPYMPMLVPPKKWKGYEKGGHLFLPSYI 403
Query: 484 MRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV 543
MRTHG+K+Q+D +K +KQ++ VFEALDTLGNTKWRVN R+L+V++ +W+ GG +A L+
Sbjct: 404 MRTHGSKKQQDVMKNVERKQMQKVFEALDTLGNTKWRVNRRLLNVVESLWAGGGNIAGLI 463
Query: 544 DRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
DR DVP+PE+P D Q+++W+W VR +K N ERHS RCD ELKLSVA+KMKDEEGFY
Sbjct: 464 DRKDVPIPERPPLGDLKQIQEWKWSVRKAEKINLERHSLRCDTELKLSVAQKMKDEEGFY 523
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
YPHNVDFRGRAYPMH +LNHL DLCRG+LEFAEGR LG+SGL WLKIHLANLYAGG++K
Sbjct: 524 YPHNVDFRGRAYPMHSHLNHLSCDLCRGLLEFAEGRPLGESGLCWLKIHLANLYAGGIEK 583
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
LS++GRLAF ENHL DIFDSAD P+ G RWWL A+DPFQCLA CINL+EALRSSSP + I
Sbjct: 584 LSYDGRLAFVENHLHDIFDSADNPINGNRWWLMADDPFQCLAACINLSEALRSSSPNSVI 643
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD 783
H+P+HQDGSCNGLQHYAALGRD+L AAAVNLVA EKPADVYS IA RV I+++D +D
Sbjct: 644 LHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVASEKPADVYSEIAVRVHDIMRKDCIKD 703
Query: 784 PAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG 843
PA +P+AL AK+L+ Q+DRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G +E LF
Sbjct: 704 PAAYPNALLAKVLIDQIDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGLITDEKLLFA 763
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR 903
A+CYAAKVTLTALGE+F AAR IM WLG+CAK+IA ENQPVRWTTPLGLPVVQPY K R
Sbjct: 764 AACYAAKVTLTALGEIFGAARVIMGWLGDCAKVIAFENQPVRWTTPLGLPVVQPYCKTER 823
Query: 904 HTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHD 963
H +KTSLQ L L+RE V K+QR+AFPPNFVHSLDGSHMMMTA+ACR AGL FAGVHD
Sbjct: 824 HLIKTSLQFLALRREGNAVDAKKQRSAFPPNFVHSLDGSHMMMTALACRDAGLCFAGVHD 883
Query: 964 SYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPE-RGDFDLREV 1022
S+WTHACDV++M++ILREKFVELY MPI ENLL+ F+ S+P L FPPLPE RGDFDL++V
Sbjct: 884 SFWTHACDVEKMSQILREKFVELYSMPILENLLEGFETSYPGLTFPPLPERRGDFDLQKV 943
Query: 1023 LGSPYFFN 1030
L SPYFFN
Sbjct: 944 LESPYFFN 951
>gi|356514404|ref|XP_003525896.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Glycine
max]
Length = 973
Score = 1162 bits (3006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/903 (62%), Positives = 690/903 (76%), Gaps = 32/903 (3%)
Query: 141 STDVEEDVSIVEEIQELLQE----------MKKEEQREGENGSGRNRRRVARGMGSGKYR 190
S VEEDVS + +QE M++EE R+ +++ R KY
Sbjct: 90 SAAVEEDVSPATTARIFVQEPPWLFLKGLLMQEEEMRQ------KDKER-------EKYN 136
Query: 191 MLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ- 249
+L+ RQ++ ETEAWEK EYREL +M E+ LAPNLP++KSL LGWFEP R A+ EQ
Sbjct: 137 LLRRRQIEAETEAWEKMVEEYRELEREMREKMLAPNLPHVKSLLLGWFEPFRAAVEAEQT 196
Query: 250 -ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIE 308
R R K + + AP+ D LPAD +AVI MHK+M ++M E G ++V AA IG A+E
Sbjct: 197 AHRARPKKQQDSIAPHVDDLPADKVAVIVMHKMMAMVMEN-EEGCVQLVHAAVHIGMALE 255
Query: 309 QEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK 368
QEVRIHKF+E K K EGD +++ +++EK R + L+KK +L V+ I++
Sbjct: 256 QEVRIHKFVEGNKSSQSKKT----EGDAEDSLDSDKEKQRNYLNSLLKKNRLREVQMILR 311
Query: 369 GQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVS-KET 427
+++ PW +D +AK+GSR++ELL TAY+ SP +Q AD PPDI PAF H + V
Sbjct: 312 -KEECSPWSRDTQAKLGSRLVELLIDTAYVHSPVNQSADTPPDIRPAFRHGFKAVPWHPG 370
Query: 428 KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTH 487
+ SKKYG+I+C+PLVL GLE+ A+HM+IPYMPML+PP KW GYDKG H FLPSY+MRTH
Sbjct: 371 QKFSKKYGIIQCDPLVLVGLEKCAKHMLIPYMPMLIPPKKWKGYDKGGHLFLPSYIMRTH 430
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRND 547
G+K+Q+D +K Q++ VFEALD LGNTKWRVN RVL V++ IW+ GG +A LVD D
Sbjct: 431 GSKKQQDVMKNVDGAQMQKVFEALDILGNTKWRVNRRVLGVVESIWAGGGNIAGLVDCKD 490
Query: 548 VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHN 607
VP P+KP ED +++W+ VR KK N ERHS RCD ELKLSVARKMKDEEGFYYPHN
Sbjct: 491 VPKPDKPLVEDLKLIQEWKCNVRKAKKINLERHSLRCDTELKLSVARKMKDEEGFYYPHN 550
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
+DFRGRAYPMHP+LNHLGSDLCRG+LEFAEGR LGKSGL WLKIHLANLYAGG++K S++
Sbjct: 551 LDFRGRAYPMHPHLNHLGSDLCRGLLEFAEGRPLGKSGLRWLKIHLANLYAGGIEKQSYD 610
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIP 727
GRL F E+H+ DIFDSAD P+ G RWWL AEDPFQCLA CINL+EALRSSSP +FISH+P
Sbjct: 611 GRLGFIEDHIHDIFDSADHPINGNRWWLTAEDPFQCLAACINLSEALRSSSPNSFISHLP 670
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF 787
+HQDGSCNGLQHYAALGRD L AAAVNLVA+EKPADVY+ IA RV I+++D+ +DP F
Sbjct: 671 IHQDGSCNGLQHYAALGRDDLEAAAVNLVAKEKPADVYTEIAVRVYDIMRQDSNKDPDTF 730
Query: 788 PDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCY 847
P+AL AK+L+ Q+DRKLVKQTVMTSVYGVTYIGAR+QIKRRL E+G ++ L+ ASCY
Sbjct: 731 PNALLAKVLIDQIDRKLVKQTVMTSVYGVTYIGAREQIKRRLGEKGFVTDDRLLYAASCY 790
Query: 848 AAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVK 907
AAKVTL ALGE+F+AARGIM WLG+CAK+IA ENQ V WTTPLGLPVVQPY K R+ ++
Sbjct: 791 AAKVTLAALGEVFEAARGIMGWLGDCAKVIACENQAVCWTTPLGLPVVQPYCKTERYQIR 850
Query: 908 TSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWT 967
TSLQ+L LQRE V VK+QR+AFPPNFVHSLD SHMMMTA+AC AGL FAGVHDS+WT
Sbjct: 851 TSLQLLALQREGSAVSVKKQRSAFPPNFVHSLDSSHMMMTALACNDAGLCFAGVHDSFWT 910
Query: 968 HACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPY 1027
H CDV++MN+ILREKFVELY MPI ENLL+ FQ ++P L FPPLP+RGDFDL++VL SPY
Sbjct: 911 HPCDVEKMNQILREKFVELYNMPILENLLEGFQTTYPGLAFPPLPKRGDFDLQKVLDSPY 970
Query: 1028 FFN 1030
FFN
Sbjct: 971 FFN 973
>gi|356510622|ref|XP_003524036.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Glycine
max]
Length = 1043
Score = 1159 bits (2999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/902 (62%), Positives = 688/902 (76%), Gaps = 31/902 (3%)
Query: 141 STDVEEDVS------IVEEIQELLQE---MKKEEQREGENGSGRNRRRVARGMGSGKYRM 191
S VEED S V+E L + M++EE R+ G+ R KY +
Sbjct: 161 SAAVEEDASPAAARIFVQEPPWLFLKGLLMQEEEMRQ----KGKERE---------KYNL 207
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ-- 249
L+ RQ++ ETEAWE+ EYREL +M E+ LAPNLP++K+L LGWFEP R A+ EQ
Sbjct: 208 LRRRQIEAETEAWERMVEEYRELEREMREKMLAPNLPHVKALLLGWFEPFRAAVEAEQTA 267
Query: 250 ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQ 309
R K + + AP+ D LPAD +AVI MHK+M ++M E G ++V AA IG A+EQ
Sbjct: 268 HHARPKKQQDSIAPHVDDLPADKVAVIVMHKMMAMVMES-EEGCVQLVHAAIHIGLALEQ 326
Query: 310 EVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG 369
EVRIHKF+E K K EGD +++ +++EK R + L+KK +L V+ I++
Sbjct: 327 EVRIHKFIEGNKSNRSKKT----EGDAEDSLDSDKEKQRNYLNSLLKKNRLREVQMILR- 381
Query: 370 QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVS-KETK 428
+++ PW QD +AK+GSR+IELL TAY+ SP +Q AD PPDI PAF H + V +
Sbjct: 382 KEECSPWSQDTQAKLGSRLIELLIDTAYVHSPVNQSADTPPDIRPAFRHGFKAVPWHPGQ 441
Query: 429 GGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHG 488
SKKYGVI+C+PLVL GLE+ A+HM+IPYMPML+PP KW GYDKG H FLPSY+MRTHG
Sbjct: 442 KFSKKYGVIQCDPLVLVGLEKCAKHMLIPYMPMLIPPKKWKGYDKGGHLFLPSYIMRTHG 501
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV 548
+++Q+D +K Q++ VFE LD LGNTKWRVN R+L V++ IW+ GG +A LVD DV
Sbjct: 502 SRKQQDVMKNVNGAQMQKVFETLDILGNTKWRVNRRMLGVVESIWAGGGNIAGLVDCKDV 561
Query: 549 PLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
P P+KP ED +++W+ VR KK N ERHS RCD ELKLSVARKMKDEEGFYYPHN+
Sbjct: 562 PKPDKPPVEDLKLIQEWKCSVRKAKKINLERHSLRCDTELKLSVARKMKDEEGFYYPHNL 621
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGRAYPMHP+LNHLGSDLCRG+LEFAEGR LGKSGL WLKIHLANLYAGG++K S++G
Sbjct: 622 DFRGRAYPMHPHLNHLGSDLCRGLLEFAEGRPLGKSGLRWLKIHLANLYAGGIEKHSYDG 681
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
RL F E+H+ DIFDSAD P+ G RWWL AEDPFQCLA CINL+EALRSSSP +FISH+P+
Sbjct: 682 RLGFIEDHIHDIFDSADHPINGNRWWLTAEDPFQCLAACINLSEALRSSSPNSFISHLPI 741
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
HQDGSCNGLQHYAALGRD L AAAVNLVA+EKPADVY+ IA RV I++RD+ +DP FP
Sbjct: 742 HQDGSCNGLQHYAALGRDNLEAAAVNLVAKEKPADVYTEIAVRVYDIMRRDSNKDPDTFP 801
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYA 848
+AL AK+LL Q+DRKLVKQTVMTSVYGVTYIGAR+QIKRRL E+G ++ L+ ASCYA
Sbjct: 802 NALLAKVLLGQIDRKLVKQTVMTSVYGVTYIGAREQIKRRLGEKGLITDDRLLYAASCYA 861
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT 908
AKVTL ALGE+F+AARGIM WLG+CAK+IA ENQ VRWTTPLGLPVVQPY K R+ ++T
Sbjct: 862 AKVTLAALGEVFEAARGIMGWLGDCAKVIACENQAVRWTTPLGLPVVQPYCKTERYQIRT 921
Query: 909 SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
SLQ+L LQRE V VK+QR+AFPPNFVHSLD SHMMMTA+AC AGL FAGVHDS+WTH
Sbjct: 922 SLQLLALQREGSAVSVKKQRSAFPPNFVHSLDSSHMMMTALACNDAGLCFAGVHDSFWTH 981
Query: 969 ACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYF 1028
CDV++MN+ILREKFVELY MPI ENLL+ FQ ++P L FPPLP+RGDFDL++VL SPYF
Sbjct: 982 PCDVEKMNQILREKFVELYNMPILENLLEGFQTTYPGLAFPPLPKRGDFDLQKVLDSPYF 1041
Query: 1029 FN 1030
FN
Sbjct: 1042 FN 1043
>gi|30698496|dbj|BAC76605.1| RpoT2 [Oryza sativa Japonica Group]
gi|37360971|dbj|BAC98394.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
Length = 953
Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/845 (61%), Positives = 664/845 (78%), Gaps = 9/845 (1%)
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 246
++R L+ RQVK ETEAW +AA+EYREL +M +++LAP LPY+KSLFLGWFEPLRDAIA
Sbjct: 117 AEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIA 176
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH-GRARVVQAACIIGD 305
++QE R + K YA Y LPAD +AVI MHK+MGLLM+ + RVVQAA IG+
Sbjct: 177 RDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGE 236
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
A+E+E ++ F +KT+KK+ G+ + EQ K RK+V L++++KL ++
Sbjct: 237 AVEREFKVQTFFQKTRKKSA--------GENDLALEKEQAKCRKRVKSLVRRRKLTEAQK 288
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
IV+ + + + WG +++ K+G+R+IELL +A++QSPADQ ++ PDI PAF H LR
Sbjct: 289 IVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPADQTPESSPDIRPAFKHVLRQPIV 348
Query: 426 ETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
E KK+ VIEC+PLV +G E TARH+ IPY+PMLV P KW GYD G + FLPSY+MR
Sbjct: 349 ENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKWKGYDTGGYLFLPSYIMR 408
Query: 486 THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
THG K Q++ +K P+KQL VFEALDTLG+TKWRVN RV + ++ IWS GG +A LVD+
Sbjct: 409 THGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVNRRVHNAVETIWSRGGGIAGLVDK 468
Query: 546 NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
++PLPE+PETED +++KW+W ++ KK NRE H++RCD ELKLSVARKM++E+GFYYP
Sbjct: 469 ENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAERCDTELKLSVARKMREEDGFYYP 528
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HN+DFRGRAYPMH +L+HLGSDLCRG+LE+AEGR LGKSGL WLKIHLAN Y GG++KLS
Sbjct: 529 HNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLS 588
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
HE ++AF EN L DIFDSA P++G WW+ AEDPFQCLA C++L++AL+SSSP+ +SH
Sbjct: 589 HEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACMDLSDALKSSSPQCAVSH 648
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
+P+HQDGSCNGLQHYAALGRD +GAAAVNLV +KPAD+YS IAARVL +++ D+ DPA
Sbjct: 649 LPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPADIYSEIAARVLDVVREDSMEDPA 708
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
P A A++L+ QVDRKLVKQTVMTSVYGVTYIGAR QI +RL+E+G ++ L+ S
Sbjct: 709 TNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYEVS 768
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHT 905
CYA +VTL ALG+MFQ+ARGIM+WLG+CAK+IASEN PV+WT+P+GLPVVQPY+K +
Sbjct: 769 CYATRVTLDALGQMFQSARGIMAWLGDCAKMIASENHPVKWTSPVGLPVVQPYKKYKNYM 828
Query: 906 VKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
++TSLQ L L+RE + + ++RQ+ AFPPNFVHSLD SHMMMTA+AC+KAGL FAGVHDS+
Sbjct: 829 IRTSLQCLALRREGDAIALQRQKAAFPPNFVHSLDSSHMMMTAIACKKAGLHFAGVHDSF 888
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGS 1025
W HACDVD+MN+ILRE+FVELY MPI ENLL FQ SFP L FPP P +GDFD+REVL S
Sbjct: 889 WVHACDVDKMNQILREQFVELYSMPILENLLKEFQTSFPTLEFPPCPSQGDFDVREVLAS 948
Query: 1026 PYFFN 1030
YFFN
Sbjct: 949 TYFFN 953
>gi|357516849|ref|XP_003628713.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522735|gb|AET03189.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 727
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/727 (73%), Positives = 626/727 (86%), Gaps = 13/727 (1%)
Query: 317 LEKTKKKNETKNKEDEE------------GDESNTVTTEQEKLRKKVTDLIKKQKLPAVR 364
+EKTK K T +K D + +E+ + E+++LR KV LIKKQK
Sbjct: 1 MEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQAL 60
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVS 424
IVKG+D KPWGQ+A+ KVGSR+I+LL +TAY++ PA++ D PDIFPAF H L+T+S
Sbjct: 61 GIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTIS 120
Query: 425 KETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVM 484
++ GS++YGVIEC+P++ KGLE+TAR+MVIPYMPMLVPP W GYDKGA+ FLPSYVM
Sbjct: 121 NDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVM 180
Query: 485 RTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD 544
R HGAKQQRD +K PK QL+ +FEAL+TLGNTKWRVN VL V+D+IW+ GGR+ADLVD
Sbjct: 181 RIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVD 240
Query: 545 RNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
R+D+PLPE+ +TEDE+++RKW+WKV+NVKKEN ERHSQRCDIELKL+VARK+K+E+GFYY
Sbjct: 241 RDDLPLPEELDTEDESEIRKWKWKVKNVKKENNERHSQRCDIELKLAVARKLKEEDGFYY 300
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA-GGVDK 663
PHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGK GL WLKIHLANLYA GGVDK
Sbjct: 301 PHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKKGLQWLKIHLANLYATGGVDK 360
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
LS++GR+AFTE+HLDDIFDSAD+PLEG+RWWL+AEDPFQCLA CINL+EALRS +PE +
Sbjct: 361 LSYDGRVAFTEDHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACINLSEALRSPNPEATL 420
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD 783
SH+PVHQDGSCNGLQHYAALGRD LGA+AVNLV +KPADVYSGIAARVL I++RDA +D
Sbjct: 421 SHMPVHQDGSCNGLQHYAALGRDKLGASAVNLVGGDKPADVYSGIAARVLQIMKRDALKD 480
Query: 784 PAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG 843
PA P AL A+ L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER A +++ELF
Sbjct: 481 PATDPHALHARRLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAVEDDSELFA 540
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR 903
ASCYAAK TLTAL EMF+AAR IM WLG+CAK+IA NQ VRW TPLGLPVVQPYR++GR
Sbjct: 541 ASCYAAKTTLTALEEMFEAARSIMGWLGDCAKVIACTNQAVRWVTPLGLPVVQPYREVGR 600
Query: 904 HTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHD 963
H +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++AG+ FAGVHD
Sbjct: 601 HLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMNFAGVHD 660
Query: 964 SYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVL 1023
SYWTHACDV+EMNRILREKFVELYE PI ENLL++F+K+FP L FPPLPERGD DL+EVL
Sbjct: 661 SYWTHACDVEEMNRILREKFVELYETPILENLLENFEKTFPNLKFPPLPERGDLDLQEVL 720
Query: 1024 GSPYFFN 1030
SPYFFN
Sbjct: 721 KSPYFFN 727
>gi|357123259|ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Brachypodium distachyon]
Length = 943
Score = 1120 bits (2898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/837 (62%), Positives = 657/837 (78%), Gaps = 8/837 (0%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
RQVK ETEAW +AA EYR+L +M ++ LAP+LPY+KSLFLGWFEPLRDAIA++QE R
Sbjct: 114 RQVKAETEAWARAAEEYRQLEREMLDRNLAPSLPYVKSLFLGWFEPLRDAIARDQEVQRR 173
Query: 255 AKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH-GRARVVQAACIIGDAIEQEVRI 313
+ K YA Y LPA+ ++VI MHK+MGLLM+ + G RVVQAA IG+A+E+E ++
Sbjct: 174 KRVKHVYAKYLLLLPAEKVSVIVMHKMMGLLMSNKDGCGSVRVVQAAHSIGEAVEREFKV 233
Query: 314 HKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF 373
F +KT+KK + G+ + EQ K RK V L+K++KL +++V+ + +
Sbjct: 234 QAFFQKTRKKGKN-------GENDPALGKEQAKCRKLVKSLVKRRKLTEAQKLVQQEIEL 286
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
+ WG +A+ K+G+R+IELL +A++QSPADQ+ D+ PD PAF H LR E KK
Sbjct: 287 EEWGTEAQVKLGTRLIELLLDSAFVQSPADQIPDSSPDFRPAFKHVLRKPIVENGRLKKK 346
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
+ VIEC+PLV +G E TARH+ IPY+PMLVPP KW GYDKG H FLPSYVMRTHG K Q+
Sbjct: 347 HFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQK 406
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
+ +K P+KQL VFEALD LG TKWRVN RV V++ IWS GG +A LVD+ D+PLPE+
Sbjct: 407 EAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKGDIPLPER 466
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
PE+ED +++KW+W ++ KK NRE H++RCD ELKLSVARKM++E+GFYYPHN+DFRGR
Sbjct: 467 PESEDPDEIQKWKWSLKKAKKINRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGR 526
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYPMHP+L+HLGSDLCRG+LE+AEGR LGKSGL WLKIHLAN Y GG++KLSH +LAF
Sbjct: 527 AYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHGSKLAFV 586
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
ENHL DIFDSA P++G RWW+ AEDPFQCLA C++L+ AL+SSSP T ISH+P+HQDGS
Sbjct: 587 ENHLPDIFDSAANPVDGNRWWINAEDPFQCLAACVDLSNALKSSSPHTAISHLPIHQDGS 646
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD +GAAAVNLV EKPAD+YS IAARVL +++ D+ +DPA A
Sbjct: 647 CNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLDVVREDSMKDPATDASVSLA 706
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
K+L+ QVDRKLVKQTVMTSVYGVT+IGAR QI +RL+E+G ++ L+ SCYA +VTL
Sbjct: 707 KVLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDDKLLYEVSCYATRVTL 766
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
ALG+MFQ+AR IM+WLG+CAK+IAS+NQPV+WT+P+GLPVVQPY+K + ++TSLQ L
Sbjct: 767 DALGQMFQSARAIMAWLGDCAKMIASKNQPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCL 826
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
L+RE + + +RQ+ AFPPNFVHSLD SHMMMTA+ C++AGL FAGVHDS+W HACDVD
Sbjct: 827 ALRREGDTIATQRQKAAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGVHDSFWVHACDVD 886
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+MN+ILRE+FVELY MPI ENLL+ FQ SFP + FPP P +G+FD+REVL S YFFN
Sbjct: 887 KMNQILREQFVELYSMPILENLLEEFQTSFPTVEFPPCPAQGNFDVREVLTSTYFFN 943
>gi|34481851|emb|CAD45446.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/858 (60%), Positives = 663/858 (77%), Gaps = 9/858 (1%)
Query: 174 GRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL 233
G+ R R R +R L+ RQVK ETEAW +AA EYR+L +M ++ LAP LPY+KSL
Sbjct: 99 GKERERARRA----GHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSL 154
Query: 234 FLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH-G 292
FLGWFEPLRDA+A++Q+ R + K YA Y LP + +AVI MHK+MGLLM+ + G
Sbjct: 155 FLGWFEPLRDAVARDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSSKDGCG 214
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVT 352
RVVQAA IG+A+E+E ++ F +KT++K +KN E + + EQ K RK V
Sbjct: 215 SVRVVQAAHSIGEAVEREYKVQAFFQKTRRKTRSKN----ESENDPALDKEQAKCRKLVK 270
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
L++++KL +++V+ + + + WG +A+ K+G+R+IELL +A++QSPA+Q D PD
Sbjct: 271 SLVRRRKLTEAQKLVQQEIELEEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDF 330
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
PAF H LR E KK+ VIEC+PLV +G E TARH+ IPY+PMLVPP KW GYD
Sbjct: 331 RPAFKHVLRKPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYD 390
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
KG H FLPSYVMRTHG K Q++ +K P+KQL VFEALD LG TKWRVN RV V++ I
Sbjct: 391 KGGHLFLPSYVMRTHGVKDQKEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETI 450
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
WS GG +A LVD+ ++PLPE+PETED +++KW+W V+ KK NRE H++RCD ELKLSV
Sbjct: 451 WSRGGGIAGLVDKENIPLPERPETEDPDEIQKWRWSVKKTKKTNRELHAERCDTELKLSV 510
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
ARKM++E+GFYYPHN+DFRGRAYPMHP+L+HLGSDLCRG+LE+ EGR LGKSGL WLKIH
Sbjct: 511 ARKMREEDGFYYPHNLDFRGRAYPMHPHLSHLGSDLCRGVLEYGEGRPLGKSGLRWLKIH 570
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LAN Y GG++KL+HE +LAF E+ L IFDSA P++G WW+ AEDPFQCLA CI+L++
Sbjct: 571 LANKYGGGIEKLTHESKLAFVEDRLPAIFDSAANPVDGNCWWINAEDPFQCLAACIDLSD 630
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
AL+SSSP +SH+P+HQDGSCNGLQHYAALGRD +GAAAVNLV EKPAD+YS IAARV
Sbjct: 631 ALKSSSPHAAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARV 690
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
L +++ D+ +DPA P A++L+ QVDRKLVKQTVMTSVYGVT+IGAR QI +RL+E+
Sbjct: 691 LNVVREDSMKDPATDPSVPLARVLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEK 750
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
G +E L+ SCYAA+VTL ALG+MFQ+ARGIM+WLG+CAK+IAS+NQPVRWT+P+GL
Sbjct: 751 GHITDEKLLYDVSCYAARVTLDALGQMFQSARGIMAWLGDCAKMIASKNQPVRWTSPVGL 810
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
PVVQPY+K + ++TSLQ L L+RE + + +RQ+ AFPPNFVHSLD SHMMMTA+ C+
Sbjct: 811 PVVQPYKKYKNYMIRTSLQCLALRREGDAIATQRQKAAFPPNFVHSLDSSHMMMTAITCK 870
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLP 1012
+AGL FAGVHDS+W HACDVD+MN+ILRE+FVELY MPI ENLL+ FQ FP + FPP P
Sbjct: 871 EAGLHFAGVHDSFWVHACDVDKMNQILREQFVELYSMPILENLLEEFQTLFPTVEFPPCP 930
Query: 1013 ERGDFDLREVLGSPYFFN 1030
+G+FD+REVL S YFFN
Sbjct: 931 AQGNFDVREVLTSTYFFN 948
>gi|5292165|gb|AAB01085.2| single-subunit RNA polymerase C [Triticum aestivum]
Length = 949
Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/885 (60%), Positives = 676/885 (76%), Gaps = 21/885 (2%)
Query: 147 DVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEK 206
D S VEE EL +++E+ RE R RR +R L+ RQVK ETEAW +
Sbjct: 85 DYSAVEE--ELAIILEREKDRE------RARR--------ADHRRLRQRQVKAETEAWAR 128
Query: 207 AANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFD 266
AA EYR+L +M ++ LAP LPY+KSLFLGWFEPLRDA+A++Q+ R + K YA Y
Sbjct: 129 AAEEYRQLEGEMLDRHLAPQLPYVKSLFLGWFEPLRDAVARDQDVQRRKRVKHVYAKYLL 188
Query: 267 QLPADMMAVITMHKLMGLLMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNE 325
LPA+ +AVI MHK+MGLLM+ + G RVVQAA IG+A+E+E ++ F +KT++K
Sbjct: 189 LLPAEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGEAVEREYKVQAFFQKTRRK-- 246
Query: 326 TKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVG 385
T++K + E D + EQ K RK V L++++K +++V+ + + + WG +A+ K+G
Sbjct: 247 TRSKTESENDPG--LDKEQAKCRKLVKSLVRRRKSTEAQKLVQQEIELEEWGTEAQVKLG 304
Query: 386 SRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLK 445
+R+IELL +A++QSPADQ D+ PD PAF H LR E KK+ VIEC+PLV +
Sbjct: 305 TRLIELLLDSAFVQSPADQTPDSSPDFRPAFKHVLRKPIVENGRLKKKHFVIECDPLVHE 364
Query: 446 GLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLE 505
G E TARH+ IPY+PMLVPP KW GYDKG H FLPSYVMRTHG K Q++ +K P+KQL
Sbjct: 365 GFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQKEAIKSVPRKQLR 424
Query: 506 PVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKW 565
VFEALD LG TKWRVN RV V++ IWS GG +A LVD+ ++PLPE+PETED +++KW
Sbjct: 425 KVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKGNIPLPEQPETEDPDEIQKW 484
Query: 566 QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLG 625
+W V+ KK NRE H++RCD ELKLSVARKM++E+GFYYPHN+DFRGRAYPMHP+L+HLG
Sbjct: 485 KWSVKKTKKANRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHPHLSHLG 544
Query: 626 SDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSAD 685
SDLCRG+LE+AEGR LGKSGL WLKIHLAN Y GG++KLSHE +L F E+HL DIFDSA
Sbjct: 545 SDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHESKLTFVEDHLPDIFDSAA 604
Query: 686 KPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGR 745
P++G WW+ AEDPFQCLA C++L+ AL SSSP +SH+P+HQDGSCNGLQHYAALGR
Sbjct: 605 NPVDGNCWWINAEDPFQCLAACMDLSNALESSSPHGAVSHLPIHQDGSCNGLQHYAALGR 664
Query: 746 DTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLV 805
D +GAAAVNLV EKPAD+YS IAARVL +++ D+ +DPA P AK+L+ +VDRKLV
Sbjct: 665 DYMGAAAVNLVPGEKPADIYSEIAARVLDVVREDSMKDPATDPSVPLAKVLVDEVDRKLV 724
Query: 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARG 865
KQTVMTSVYGVT+IGAR QI +RL+E+G ++ L+ SCYA +VTL ALG+MFQ+AR
Sbjct: 725 KQTVMTSVYGVTFIGARQQIMKRLQEKGHITDDKLLYDVSCYATRVTLDALGQMFQSARA 784
Query: 866 IMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK 925
IM+WLG+CAK+IAS+NQPVRWT+P+GLPVVQPY+K + ++TSLQ L L+RE + + +
Sbjct: 785 IMAWLGDCAKMIASKNQPVRWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIATQ 844
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
RQ+ AFPPNFVHSLD SHMMMTA+ C++AGL FAGVHDS+W HACDVD+MN+ILRE+FVE
Sbjct: 845 RQKAAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGVHDSFWVHACDVDKMNQILREQFVE 904
Query: 986 LYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
LY MPI ENLL+ FQ FP + FPP P +G+FD+REVL S YFFN
Sbjct: 905 LYSMPILENLLEEFQTLFPTVEFPPCPAQGNFDVREVLTSTYFFN 949
>gi|34481849|emb|CAD45445.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/858 (60%), Positives = 662/858 (77%), Gaps = 9/858 (1%)
Query: 174 GRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL 233
G+ R R R +R L+ RQVK ETEAW +AA EYR+L +M ++ LAP LPY+KSL
Sbjct: 99 GKERERARRA----GHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSL 154
Query: 234 FLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH-G 292
FLGWFEPLRDA+A++Q+ R + K YA Y LP + +AVI MHK+MGLLM+ + G
Sbjct: 155 FLGWFEPLRDAVARDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSSKDGCG 214
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVT 352
RVVQAA IG+A+E+E ++ F +KT++K +KN E + + EQ K RK V
Sbjct: 215 SVRVVQAAHSIGEAVEREYKVQAFFQKTRRKTRSKN----ESENDPALDKEQAKCRKLVK 270
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
L++++KL +++V+ + + + WG +A+ K+G+R+IELL +A++QSPA+Q D PD
Sbjct: 271 SLVRRRKLTEAQKLVQQEIELEEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDF 330
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
PAF H LR E KK+ VIEC+PLV +G E TARH+ IPY+PMLVPP KW GYD
Sbjct: 331 RPAFKHVLRKPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYD 390
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
KG H FLPSYVMRTHG K Q++ +K P+KQL VFEALD LG TKWRVN RV V++ I
Sbjct: 391 KGGHLFLPSYVMRTHGVKDQKEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETI 450
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
WS GG +A LVD+ ++PLPE+PETED +++KW+W V+ KK NRE H++RCD ELKLSV
Sbjct: 451 WSRGGGIAGLVDKENIPLPERPETEDPDEIQKWRWSVKKTKKTNRELHAERCDTELKLSV 510
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
ARKM++E+GFYYPHN+DFRGRAYPMHP+L+HLGSDLCRG+LE+ EGR LGKSGL WLKIH
Sbjct: 511 ARKMREEDGFYYPHNLDFRGRAYPMHPHLSHLGSDLCRGVLEYGEGRPLGKSGLRWLKIH 570
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LAN Y GG++KL+HE +LAF E+ L IFDSA P++G WW+ AED FQCLA CI+L++
Sbjct: 571 LANKYGGGIEKLTHESKLAFVEDRLPAIFDSAANPVDGNCWWINAEDSFQCLAACIDLSD 630
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
AL+SSSP +SH+P+HQDGSCNGLQHYAALGRD +GAAAVNLV EKPAD+YS IAARV
Sbjct: 631 ALKSSSPHAAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARV 690
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
L +++ D+ +DPA P A++L+ QVDRKLVKQTVMTSVYGVT+IGAR QI +RL+E+
Sbjct: 691 LNVVREDSMKDPATDPSVPLARVLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEK 750
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
G +E L+ SCYAA+VTL ALG+MFQ+ARGIM+WLG+CAK+IAS+NQPVRWT+P+GL
Sbjct: 751 GHITDEKLLYDVSCYAARVTLDALGQMFQSARGIMAWLGDCAKMIASKNQPVRWTSPVGL 810
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
PVVQPY+K + ++TSLQ L L+RE + + +RQ+ AFPPNFVHSLD SHMMMTA+ C+
Sbjct: 811 PVVQPYKKYKNYMIRTSLQCLALRREGDAIATQRQKAAFPPNFVHSLDSSHMMMTAITCK 870
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLP 1012
+AGL FAGVHDS+W HACDVD+MN+ILRE+FVELY MPI ENLL+ FQ FP + FPP P
Sbjct: 871 EAGLHFAGVHDSFWVHACDVDKMNQILREQFVELYSMPILENLLEEFQTLFPTVEFPPCP 930
Query: 1013 ERGDFDLREVLGSPYFFN 1030
+G+FD+REVL S YFFN
Sbjct: 931 AQGNFDVREVLTSTYFFN 948
>gi|222636003|gb|EEE66135.1| hypothetical protein OsJ_22187 [Oryza sativa Japonica Group]
Length = 946
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/868 (60%), Positives = 663/868 (76%), Gaps = 34/868 (3%)
Query: 189 YRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE 248
+R L+ RQVK ETEAW +AA+EYREL +M +++LAP LPY+KSLFLGWFEPLRDAIA++
Sbjct: 87 HRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIARD 146
Query: 249 QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH-GRARVVQAACIIGDAI 307
QE R + K YA Y LPAD +AVI MHK+MGLLM+ + RVVQAA IG+A+
Sbjct: 147 QEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGEAV 206
Query: 308 EQEVR-------------------------IHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
E+E R + F +KT+KK+ G+ +
Sbjct: 207 ERENRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKTRKKSA--------GENDLALEK 258
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA 402
EQ K RK+V L++++KL ++IV+ + + + WG +++ K+G+R+IELL +A++QSPA
Sbjct: 259 EQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPA 318
Query: 403 DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPML 462
DQ ++ PDI PAF H LR E KK+ VIEC+PLV +G E TARH+ IPY+PML
Sbjct: 319 DQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPML 378
Query: 463 VPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVN 522
V P KW GYD G + FLPSY+MRTHG K Q++ +K P+KQL VFEALDTLG+TKWRVN
Sbjct: 379 VTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVN 438
Query: 523 NRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQ 582
RV + ++ IWS GG +A LVD+ ++PLPE+PETED +++KW+W ++ KK NRE H++
Sbjct: 439 RRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAE 498
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
RCD ELKLSVARKM++E+GFYYPHN+DFRGRAYPMH +L+HLGSDLCRG+LE+AEGR LG
Sbjct: 499 RCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLG 558
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
KSGL WLKIHLAN Y GG++KLSHE ++AF EN L DIFDSA P++G WW+ AEDPFQ
Sbjct: 559 KSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQ 618
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
CLA C++L++AL+SSSP+ +SH+P+HQDGSCNGLQHYAALGRD +GAAAVNLV +KPA
Sbjct: 619 CLAACMDLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPA 678
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
D+YS IAARVL +++ D+ DPA P A A++L+ QVDRKLVKQTVMTSVYGVTYIGAR
Sbjct: 679 DIYSEIAARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGAR 738
Query: 823 DQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ 882
QI +RL+E+G ++ L+ SCYA +VTL ALG+MFQ+ARGIM+WLG+CAK+IASEN
Sbjct: 739 QQITKRLQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSARGIMAWLGDCAKMIASENH 798
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGS 942
PV+WT+P+GLPVVQPY+K + ++TSLQ L L+RE + + ++RQ+ AFPPNFVHSLD S
Sbjct: 799 PVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIALQRQKAAFPPNFVHSLDSS 858
Query: 943 HMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKS 1002
HMMMTA+AC+KAGL FAGVHDS+W HACDVD+MN+ILRE+FVELY MPI ENLL FQ S
Sbjct: 859 HMMMTAIACKKAGLHFAGVHDSFWVHACDVDKMNQILREQFVELYSMPILENLLKEFQTS 918
Query: 1003 FPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FP L FPP P +GDFD+REVL S YFFN
Sbjct: 919 FPTLEFPPCPSQGDFDVREVLASTYFFN 946
>gi|125556302|gb|EAZ01908.1| hypothetical protein OsI_23934 [Oryza sativa Indica Group]
Length = 950
Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/870 (59%), Positives = 664/870 (76%), Gaps = 34/870 (3%)
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 246
++R L+ RQVK ETEAW +AA+EYREL +M +++LAP LPY+KSLFLGWFEPLRDAIA
Sbjct: 89 AEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIA 148
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH-GRARVVQAACIIGD 305
++QE R + K YA Y LPAD +AVI MHK+MGLLM+ + RVVQAA IG+
Sbjct: 149 RDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGE 208
Query: 306 AIEQEVR-------------------------IHKFLEKTKKKNETKNKEDEEGDESNTV 340
A+E+E R + F +KT+KK+ G+ +
Sbjct: 209 AVERENRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKTRKKSA--------GENDLAL 260
Query: 341 TTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQS 400
EQ K RK+V L++++KL ++IV+ + + + WG +++ K+G+R+IELL +A++QS
Sbjct: 261 EKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQS 320
Query: 401 PADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMP 460
PADQ ++ PDI PAF H LR E KK+ VIEC+PLV +G E TARH+ IPY+P
Sbjct: 321 PADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLP 380
Query: 461 MLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWR 520
MLV P KW GYD G + FLPSY+MRTHG K Q++ +K P+KQL VFEALDTLG+TKWR
Sbjct: 381 MLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWR 440
Query: 521 VNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERH 580
VN RV + ++ IWS GG +A LVD+ ++PLPE+PETED +++KW+W ++ KK NRE H
Sbjct: 441 VNRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELH 500
Query: 581 SQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRT 640
++RCD ELKLSVARKM++E+GFYYPHN+DFRGRAYPMH +L+HLGSDLCRG+LE+AEGR
Sbjct: 501 AERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRP 560
Query: 641 LGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDP 700
LGKSGL WLKIHLAN Y GG++KLSHE ++AF EN L DIFDSA P++G WW+ AEDP
Sbjct: 561 LGKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDP 620
Query: 701 FQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK 760
FQCLA C++L++AL+SSSP+ +SH+P+HQDGSCNGLQHYAALGRD +GAAAVNLV +K
Sbjct: 621 FQCLAACMDLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDK 680
Query: 761 PADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIG 820
PAD+YS IAARVL +++ D+ DPA P A A++L+ QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 681 PADIYSEIAARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIG 740
Query: 821 ARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE 880
AR QI +RL+E+G ++ L+ SCYA +VTL ALG+MFQ+ARGIM+WLG+CAK+IASE
Sbjct: 741 ARQQITKRLQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSARGIMAWLGDCAKMIASE 800
Query: 881 NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLD 940
N PV+WT+P+GLPVVQPY+K + ++TSLQ L L+RE + + ++RQ+ AFPPNFVHSLD
Sbjct: 801 NYPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIALQRQKAAFPPNFVHSLD 860
Query: 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
SHMMMTA+AC+KAGL FAGVHDS+W HACDVD+MN+ILRE+FVELY MPI ENLL FQ
Sbjct: 861 SSHMMMTAIACKKAGLHFAGVHDSFWVHACDVDKMNQILREQFVELYSMPILENLLKEFQ 920
Query: 1001 KSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
SFP L FPP P +GDFD+REVL S YFFN
Sbjct: 921 TSFPTLEFPPCPSQGDFDVREVLASTYFFN 950
>gi|3341648|emb|CAA06488.1| DNA directed RNA polymerase [Zea mays]
gi|413954906|gb|AFW87555.1| DNA-directed RNA polymerase isoform 1 [Zea mays]
gi|413954907|gb|AFW87556.1| DNA-directed RNA polymerase isoform 2 [Zea mays]
Length = 952
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/835 (61%), Positives = 655/835 (78%), Gaps = 8/835 (0%)
Query: 197 VKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAK 256
VK ETEAW +AA EYRE+ +M +++LAP LPY+K+LF+GWFEPLRDAIA++Q+ R +
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 257 HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE-HGRARVVQAACIIGDAIEQEVRIHK 315
K YA Y LPAD +AVI MHK+MGLLM+ + G RVVQAA IG+A+E+E ++
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 316 FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
F +K++KK +G+ + EQ K RK+V L+K++K+ +R+V+ + + +
Sbjct: 245 FFQKSRKKKI-------QGENDPALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEE 297
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
WG +A+ K+GSR+IELL +A++Q PADQ D+ PDI PAF H LR E KK+
Sbjct: 298 WGTEAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLKKKHW 357
Query: 436 VIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDT 495
VIEC+ LV +G E TARH+ IPY+PMLVPP KW GYDKG H FLPSY+MRTHG K Q+D
Sbjct: 358 VIECDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDA 417
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE 555
+ P+KQL VFEALD LG+TKWRVN RV V++ IWS GG +A LVD+ ++PLPE+PE
Sbjct: 418 INSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLPERPE 477
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
+ED +++KW+W ++ KK NRE H++RCD ELKLSVARKM++E+GFYYPHN+DFRGRAY
Sbjct: 478 SEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAY 537
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
PMHP+L+HLGSDLCRG+LE+AEGR LGKSGL WLKIHLAN Y GG++KLSHEG+LAF EN
Sbjct: 538 PMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLAFVEN 597
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCN 735
L DIFDSA P++G WW AEDPFQCLA C++L++ALRS SP +SH+P+HQDGSCN
Sbjct: 598 QLFDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIHQDGSCN 657
Query: 736 GLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKL 795
GLQHYAALGRD +GA AVNLV EKPAD+YS IA+RVL ++ D+ +DPA P A A++
Sbjct: 658 GLQHYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNVVCEDSMKDPATNPTASLARV 717
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTA 855
L+ QVDRKLVKQTVMTSVYGVTYIGAR QI +RL+E+G ++ L+ SCYA +VTL A
Sbjct: 718 LVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYDVSCYATRVTLDA 777
Query: 856 LGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
LG+MFQ+ARGIM+WLG+CAK+IAS+NQPV+WT+P+GLPVVQPY+K + ++TSLQ L L
Sbjct: 778 LGQMFQSARGIMAWLGDCAKMIASKNQPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLAL 837
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+RE + + ++RQ+ AFPPNFVHSLD SHMMMTA+AC+++GL FAGVHDS+W HACDVD+M
Sbjct: 838 RREGDAIAIQRQKAAFPPNFVHSLDSSHMMMTAIACKESGLHFAGVHDSFWVHACDVDQM 897
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
N+ILR++FVELY MPI ENLL+ FQ SFP L FPP P +G+FD+REVL S YFFN
Sbjct: 898 NQILRQQFVELYSMPILENLLEEFQTSFPTLEFPPCPPQGNFDVREVLTSTYFFN 952
>gi|162457867|ref|NP_001104932.1| RNA polymerase2 [Zea mays]
gi|4559306|gb|AAD22977.1|AF127022_1 T7-like RNA polymerase [Zea mays]
Length = 952
Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/835 (61%), Positives = 654/835 (78%), Gaps = 8/835 (0%)
Query: 197 VKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAK 256
VK ETEAW +AA EYRE+ +M +++LAP LPY+K+LF+GWFEPLRDAIA++Q+ R +
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 257 HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE-HGRARVVQAACIIGDAIEQEVRIHK 315
K YA Y LPAD +AVI MHK+MGLLM+ + G RVVQAA IG+A+E+E ++
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 316 FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
F +K++KK +G+ + EQ K RK+V L+K++K+ +R+V+ + + +
Sbjct: 245 FFQKSRKKKI-------QGENDPALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEE 297
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
WG +A+ K+GSR+IELL +A++Q PADQ D+ PDI PAF H LR E KK+
Sbjct: 298 WGTEAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLKKKHW 357
Query: 436 VIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDT 495
VIEC+ LV +G E TARH+ IPY+PMLVPP KW GYDKG H FLPSY+MRTHG K Q+D
Sbjct: 358 VIECDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDA 417
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE 555
+ P+KQL VFEALD LG+TKWRVN RV V++ IWS GG +A LVD+ ++PLPE+PE
Sbjct: 418 INSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLPERPE 477
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
+ED +++KW+W ++ KK NRE H++RCD ELKLSVARKM++E+GFYYPHN+DFRGRAY
Sbjct: 478 SEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAY 537
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
PMHP+L+HLGSDLCRG+LE+AEGR LGKSGL WLKIHLAN Y GG++KLSHEG+LAF EN
Sbjct: 538 PMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLAFVEN 597
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCN 735
L DIFDSA P++G WW AEDPFQCLA C++L++ALRS SP +SH+P+HQDGSCN
Sbjct: 598 QLFDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIHQDGSCN 657
Query: 736 GLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKL 795
GLQHYAALGRD +GA AVNLV EKPAD+YS IA+RVL ++ D+ +DPA P A A+
Sbjct: 658 GLQHYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNVVCEDSMKDPATNPTASLARA 717
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTA 855
L+ QVDRKLVKQTVMTSVYGVTYIGAR QI +RL+E+G ++ L+ SCYA +VTL A
Sbjct: 718 LVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYDVSCYATRVTLDA 777
Query: 856 LGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
LG+MFQ+ARGIM+WLG+CAK+IAS+NQPV+WT+P+GLPVVQPY+K + ++TSLQ L L
Sbjct: 778 LGQMFQSARGIMAWLGDCAKMIASKNQPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLAL 837
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+RE + + ++RQ+ AFPPNFVHSLD SHMMMTA+AC+++GL FAGVHDS+W HACDVD+M
Sbjct: 838 RREGDAIAIQRQKAAFPPNFVHSLDSSHMMMTAIACKESGLHFAGVHDSFWVHACDVDQM 897
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
N+ILR++FVELY MPI ENLL+ FQ SFP L FPP P +G+FD+REVL S YFFN
Sbjct: 898 NQILRQQFVELYSMPILENLLEEFQTSFPTLEFPPCPPQGNFDVREVLTSTYFFN 952
>gi|242093768|ref|XP_002437374.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
gi|241915597|gb|EER88741.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
Length = 960
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/844 (61%), Positives = 659/844 (78%), Gaps = 9/844 (1%)
Query: 189 YRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE 248
+R L+ RQVK ETEAW +AA EYRE+ +M +++LAP LPY+KSLF+GWFEPLRDAIA++
Sbjct: 124 HRRLRQRQVKAETEAWARAAEEYREIEREMLDRRLAPALPYVKSLFVGWFEPLRDAIARD 183
Query: 249 QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE-HGRARVVQAACIIGDAI 307
Q+ R + K YA Y LPAD +AVI MHK+MGLLM+ + G RVVQAA IG+A+
Sbjct: 184 QDVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAV 243
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
E+E ++ F +K++KK + +G+ + EQ K RK+V L+K++K+ +++V
Sbjct: 244 EREFKVQSFFQKSRKKKD-------QGENDPALEKEQAKCRKRVKTLVKRRKMSEAQKLV 296
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
+ + + + WG +A+ K+GSR+IELL +A++Q PADQ+ D+ PDI PAF H LR E
Sbjct: 297 QQELELEEWGTEAQVKLGSRLIELLLDSAFVQPPADQIPDSSPDIRPAFKHVLRQPIIEN 356
Query: 428 KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTH 487
KK+ VIEC+ LV G E TARH+ IPY+PMLVPP KW GY+KG H FLPSY+MRTH
Sbjct: 357 GRLKKKHWVIECDHLVHDGFESTARHVDIPYLPMLVPPKKWKGYNKGGHLFLPSYIMRTH 416
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRND 547
G K Q+D + P+KQL VFEALD LG+TKWRVN RV V++ IWS GG +A LVD+ +
Sbjct: 417 GVKDQKDAINSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSRGGGIAGLVDKAN 476
Query: 548 VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHN 607
+PLPE+PE+ED +++KW+W ++ KK NRE H++RCD ELKLSVARKM++E+GFYYPHN
Sbjct: 477 IPLPERPESEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHN 536
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
+DFRGRAYPMHP+L+HLGSDLCRG+LE+AEGR LGKSGL WLKIHLAN Y GGV+KLSHE
Sbjct: 537 LDFRGRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGVEKLSHE 596
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIP 727
G+LAF EN L DIFDSA P++G WW AEDPFQCLA C++L++AL S SP +SH+P
Sbjct: 597 GKLAFVENQLLDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALNSPSPYRTVSHLP 656
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF 787
+HQDGSCNGLQHYAALGRD +GA AVNLV EKPAD+YS IAARVL +++ D+ +DPA
Sbjct: 657 IHQDGSCNGLQHYAALGRDYMGAVAVNLVPGEKPADIYSEIAARVLNVVREDSMKDPATN 716
Query: 788 PDA-LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
P A L + QVDRKLVKQTVMTSVYGVTYIGAR QI +RL+E+G ++ L+ SC
Sbjct: 717 PTASLDMGIGSLQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLIADDKLLYDVSC 776
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
YA +VTL ALG+MFQ+ARGIM+WLG+CAK+IAS+NQPV+WT+P+GLPVVQPY+K + +
Sbjct: 777 YATRVTLDALGQMFQSARGIMAWLGDCAKMIASKNQPVKWTSPVGLPVVQPYKKYKNYMI 836
Query: 907 KTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
+TSLQ L L+RE + + ++RQ+ AFPPNFVHSLD SHMMMTA+AC++AGL FAGVHDS+W
Sbjct: 837 RTSLQCLALRREGDAIAIQRQKAAFPPNFVHSLDSSHMMMTAIACKEAGLHFAGVHDSFW 896
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSP 1026
HACDVD+MN+ILR++FVELY MPI +NLL+ FQ +FP L FPP P +G+FD+REVL S
Sbjct: 897 VHACDVDQMNQILRQQFVELYSMPILDNLLEEFQMAFPTLEFPPCPPQGNFDVREVLTST 956
Query: 1027 YFFN 1030
YFFN
Sbjct: 957 YFFN 960
>gi|297606283|ref|NP_001058231.2| Os06g0652000 [Oryza sativa Japonica Group]
gi|51534999|dbj|BAD38123.1| putative T7 bacteriophage-type single subunit RNA polymerase [Oryza
sativa Japonica Group]
gi|255677283|dbj|BAF20145.2| Os06g0652000 [Oryza sativa Japonica Group]
Length = 806
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/814 (61%), Positives = 640/814 (78%), Gaps = 9/814 (1%)
Query: 218 MCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVIT 277
M +++LAP LPY+KSLFLGWFEPLRDAIA++QE R + K YA Y LPAD +AVI
Sbjct: 1 MLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVAVIV 60
Query: 278 MHKLMGLLMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDE 336
MHK+MGLLM+ + RVVQAA IG+A+E+E ++ F +KT+KK+ G+
Sbjct: 61 MHKMMGLLMSSKDGVASVRVVQAAHCIGEAVEREFKVQTFFQKTRKKSA--------GEN 112
Query: 337 SNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA 396
+ EQ K RK+V L++++KL ++IV+ + + + WG +++ K+G+R+IELL +A
Sbjct: 113 DLALEKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSA 172
Query: 397 YIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI 456
++QSPADQ ++ PDI PAF H LR E KK+ VIEC+PLV +G E TARH+ I
Sbjct: 173 FVQSPADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEI 232
Query: 457 PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGN 516
PY+PMLV P KW GYD G + FLPSY+MRTHG K Q++ +K P+KQL VFEALDTLG+
Sbjct: 233 PYLPMLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGS 292
Query: 517 TKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKEN 576
TKWRVN RV + ++ IWS GG +A LVD+ ++PLPE+PETED +++KW+W ++ KK N
Sbjct: 293 TKWRVNRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKAN 352
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
RE H++RCD ELKLSVARKM++E+GFYYPHN+DFRGRAYPMH +L+HLGSDLCRG+LE+A
Sbjct: 353 RELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYA 412
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
EGR LGKSGL WLKIHLAN Y GG++KLSHE ++AF EN L DIFDSA P++G WW+
Sbjct: 413 EGRPLGKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMN 472
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
AEDPFQCLA C++L++AL+SSSP+ +SH+P+HQDGSCNGLQHYAALGRD +GAAAVNLV
Sbjct: 473 AEDPFQCLAACMDLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLV 532
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
+KPAD+YS IAARVL +++ D+ DPA P A A++L+ QVDRKLVKQTVMTSVYGV
Sbjct: 533 PGDKPADIYSEIAARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGV 592
Query: 817 TYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKI 876
TYIGAR QI +RL+E+G ++ L+ SCYA +VTL ALG+MFQ+ARGIM+WLG+CAK+
Sbjct: 593 TYIGARQQITKRLQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSARGIMAWLGDCAKM 652
Query: 877 IASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFV 936
IASEN PV+WT+P+GLPVVQPY+K + ++TSLQ L L+RE + + ++RQ+ AFPPNFV
Sbjct: 653 IASENHPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIALQRQKAAFPPNFV 712
Query: 937 HSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLL 996
HSLD SHMMMTA+AC+KAGL FAGVHDS+W HACDVD+MN+ILRE+FVELY MPI ENLL
Sbjct: 713 HSLDSSHMMMTAIACKKAGLHFAGVHDSFWVHACDVDKMNQILREQFVELYSMPILENLL 772
Query: 997 DSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FQ SFP L FPP P +GDFD+REVL S YFFN
Sbjct: 773 KEFQTSFPTLEFPPCPSQGDFDVREVLASTYFFN 806
>gi|255574998|ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
gi|223532193|gb|EEF33998.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
Length = 1000
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/818 (64%), Positives = 625/818 (76%), Gaps = 45/818 (5%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
KY +L+ RQ++ ETEAWE+ EY+ L+ +MCE+KLAPNLPY+K LFLGWFEPL++ I
Sbjct: 149 KYNLLRRRQIREETEAWERMVEEYKALVKEMCERKLAPNLPYVKGLFLGWFEPLKEGIKS 208
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
EQ R K+K A+AP+ + LPAD MAVI MHK++GLLM G E G +VQAA IG AI
Sbjct: 209 EQNLQRSKKNKAAFAPHIELLPADKMAVIVMHKMVGLLMVGHEDGCVPLVQAAVQIGMAI 268
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
EQEVRIH FLEKTK N + K ES + E+E LRK+V LI+++KL V+++V
Sbjct: 269 EQEVRIHNFLEKTK--NYQRKKTISGAQES--LGKEKEILRKRVNSLIRRKKLIEVQKLV 324
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
K ++ KPWG+D +AK+GSR+IELLT+TA++Q P +Q AD PPD+ PAF H R V K
Sbjct: 325 KNEE-MKPWGRDTQAKLGSRLIELLTETAFVQPPVNQSADVPPDVRPAFRHRFRIV-KNN 382
Query: 428 KGGS--KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
G KKYGVIECNPLVLKGL+ +A+HM+IPY PMLVPP KW GY+KG HFFLPSY+MR
Sbjct: 383 PGQKIVKKYGVIECNPLVLKGLDGSAKHMLIPYFPMLVPPKKWKGYNKGGHFFLPSYIMR 442
Query: 486 THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
THG+++Q+D +K P+ ++ VFEALDTLGNTKWRVN RVL V++ IW+ GG +A LVDR
Sbjct: 443 THGSRKQQDALKNVPRNHMQKVFEALDTLGNTKWRVNRRVLDVVESIWARGGNIAGLVDR 502
Query: 546 NDVPLPEKP---------ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
D + +T+ +++R W R KK NRERH VARK+
Sbjct: 503 KDAGCHQSALLPVLMLFMKTDRTSEVR---WSARKAKKTNRERHLN--------DVARKL 551
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
KDEEGFYYPHN+DFRGRAYPMHP+L HL SDLCRGILEFAEGR LGKSGL WLKIHLANL
Sbjct: 552 KDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANL 611
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
Y+GGV+KLSH+GRLAF E+HL DIFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S
Sbjct: 612 YSGGVEKLSHDGRLAFVEDHLADIFDSAENPVNGNRWWLTAEDPFQCLAACINLSEALKS 671
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
SSP T ISH+P+HQ AAAVNLVA EKPADVY+ IAARV +I
Sbjct: 672 SSPHTVISHLPIHQPE-----------------AAAVNLVAGEKPADVYTEIAARVHELI 714
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
+RD+ +DPA P+AL AKLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G
Sbjct: 715 ERDSNKDPATNPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGQIT 774
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
++ LF ASCY AKVTLTALGE+FQAAR IM WLG+CAK+IASE+QPV+WTTPLGLPVVQ
Sbjct: 775 DDRLLFSASCYTAKVTLTALGELFQAARDIMGWLGDCAKVIASEDQPVQWTTPLGLPVVQ 834
Query: 897 PYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
PY K RH ++TSLQ+L LQRE V V++QRTAFPPNFVHSLDGSHMMMTAVACR A L
Sbjct: 835 PYYKSERHLIRTSLQVLALQREGSSVKVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADL 894
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
FAGVHDS+WTHACDVD MNRILREKFVELY M I EN
Sbjct: 895 RFAGVHDSFWTHACDVDLMNRILREKFVELYSMSILEN 932
>gi|125562883|gb|EAZ08263.1| hypothetical protein OsI_30516 [Oryza sativa Indica Group]
Length = 845
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/654 (75%), Positives = 556/654 (85%), Gaps = 42/654 (6%)
Query: 377 GQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGV 436
G+ +VGSR+IEL+ +TAYIQ PA Q AD PPDI PAFTH +RTV++E +
Sbjct: 234 GEAIEHEVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQ-------- 285
Query: 437 IECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTV 496
YDKGAH FLPSYVMRTHGA+QQRD V
Sbjct: 286 ----------------------------------YDKGAHLFLPSYVMRTHGARQQRDAV 311
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET 556
+R P++Q++ VFEAL+TLG+TKWRVN RVLS++DRIWS GGRLADLVDR DV LPEKP+T
Sbjct: 312 RRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDT 371
Query: 557 EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYP 616
EDE +L+KW+W +R KKEN ERHSQRCD+ELKL+VARKMKDE+GFYYPHN+DFRGRAYP
Sbjct: 372 EDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYP 431
Query: 617 MHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENH 676
MHPYLNHLGSDLCRG+LEFAEGR LGKSGL WLKIHLANLYAGGVDKLS++GR+AFTENH
Sbjct: 432 MHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENH 491
Query: 677 LDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNG 736
L+DIFDSAD+PLEG+RWWL AEDPFQCLAVCINLTEALRS SPET ISHIPVHQDGSCNG
Sbjct: 492 LEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNG 551
Query: 737 LQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLL 796
LQHYAALGRD LGA AVNLVA EKPADVY+GIA RV+ I++ DA +DPA PDA RA+LL
Sbjct: 552 LQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLL 611
Query: 797 LSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTAL 856
L QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRLKER +++ELF ASCYAAKVTLTAL
Sbjct: 612 LDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTAL 671
Query: 857 GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ 916
GEMFQAAR IM+WLG+CAK+IA EN+PVRWTTPLGLPVVQPYRKLGRH +KTSLQ+LTLQ
Sbjct: 672 GEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQ 731
Query: 917 RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMN 976
RET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVHDSYWTHACDVD MN
Sbjct: 732 RETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMN 791
Query: 977 RILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ILREKFVELY+ PI ENLL+SF+KSFP+L FPPLPERGDFDL +VLGSPYFFN
Sbjct: 792 KILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 845
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 103/129 (79%)
Query: 183 GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 242
G+G KY ML+ RQ++IETEAWE+AA EYRELL DMC+QKLAPNLPY+KSLFLGWFEPLR
Sbjct: 113 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 172
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D I EQE + ++A YF+ LPADMMAVITMHKLMGLLMTG G RV+QAAC
Sbjct: 173 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 232
Query: 303 IGDAIEQEV 311
IG+AIE EV
Sbjct: 233 IGEAIEHEV 241
>gi|18077581|emb|CAC95163.1| RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/863 (58%), Positives = 644/863 (74%), Gaps = 20/863 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K + L+MRQ KIETEAW +AA EY+EL+ +MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 225 KEKALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 248 EQ---ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
EQ E +H+ Y P+ +LPADM+AVITMH+LM LLM+ EHG +VV AA IG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA-- 362
+A+EQEV I+K L +K + + + T + + V D K KL
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 363 ------------VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
V ++V+ + +PWG + KVGSR++EL+ +T+ ++SPADQ A
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 411 DIFPAFTHALRTVSKETKGGSKK-YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWT 469
++ PAF H LR + K + YGVIEC+P V+ L+++ +HMV+PYMPMLV P WT
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G+ G + L S +MRTHGAK+ RDT+ T ++ + + +ALD LG+T+W++NN VL VL
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVL 584
Query: 530 DRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
+++W GGRLADLVD DVPLP+KPE++D ++R W+ + K+ N ERHS RCD ELK
Sbjct: 585 EQVWKDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELK 644
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L+ ARK++DEEGF+YPHN+DFRGRAYP+HP+LNHLGSD+CRGIL+FAEGR LG +GL WL
Sbjct: 645 LAAARKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWL 704
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIHLANLY G V K+S + R+A+ + ++ +FDSAD+PL+G RWWL AEDPFQ LA C++
Sbjct: 705 KIHLANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLD 764
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
+ A++S +PET++SH+PVHQDGSCNGLQHYAALGRD +GA +VNLVA +KPADVYSGIA
Sbjct: 765 IRNAIKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIA 824
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
ARV I++RDAQ+DP A AKLLL ++DRKLVKQTVMTSVYGVT++GAR QI RL
Sbjct: 825 ARVREIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRL 884
Query: 830 KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTP 889
KERG E+ E++ A+CYAAK TL ALGEMF+ AR IMSWLG+CAKIIAS + V+WTTP
Sbjct: 885 KERGTIQEQTEMYRAACYAAKTTLNALGEMFKEARCIMSWLGDCAKIIASNGETVKWTTP 944
Query: 890 LGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
LGLPVVQPYRK GRH VKTSLQ+L L+ + V+V+RQ++AFPPNFVHSLD +HMMMT
Sbjct: 945 LGLPVVQPYRKPGRHLVKTSLQVLALRNLDADQPVLVQRQKSAFPPNFVHSLDSTHMMMT 1004
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
A+AC++AGLTFAGVHDSYWTHA DV++MN +LREKFVELY P+ ENLL SFQ+ FP LV
Sbjct: 1005 ALACQEAGLTFAGVHDSYWTHAGDVEQMNSLLREKFVELYSQPVLENLLKSFQERFPTLV 1064
Query: 1008 FPPLPERGDFDLREVLGSPYFFN 1030
FP +P RGD DL+EVL +PYFFN
Sbjct: 1065 FPEVPARGDLDLKEVLRAPYFFN 1087
>gi|18642493|dbj|BAB84519.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/863 (58%), Positives = 644/863 (74%), Gaps = 20/863 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K + L+MRQ KIETEAW +AA EY+EL+ +MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 225 KEKALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 248 EQ---ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
EQ E +H+ Y P+ +LPADM+AVITMH+LM LLM+ EHG +VV AA IG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA-- 362
+A+EQEV I+K L +K + + + T + + V D K KL
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 363 ------------VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
V ++V+ + +PWG + KVGSR++EL+ +T+ ++SPADQ A
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 411 DIFPAFTHALRTVSKETKGGSKK-YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWT 469
++ PAF H LR + K + YGVIEC+P V+ L+++ +HMV+PYMPMLV P WT
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G+ G + L S +MRTHGAK+ RDT+ T ++ + + +ALD LG+T+W++NN VL VL
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVL 584
Query: 530 DRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
+++W GGRLADLVD DVPLP+KPE++D ++R W+ + K+ N ERHS RCD ELK
Sbjct: 585 EQMWKDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELK 644
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L+ ARK++DEEGF+YPHN+DFRGRAYP+HP+LNHLGSD+CRGIL+FAEGR LG +GL WL
Sbjct: 645 LAAARKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWL 704
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIHLANLY G V K+S + R+A+ + ++ +FDSAD+PL+G RWWL AEDPFQ LA C++
Sbjct: 705 KIHLANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLD 764
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
+ A++S +PET++SH+PVHQDGSCNGLQHYAALGRD +GA +VNLVA +KPADVYSGIA
Sbjct: 765 IRNAIKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIA 824
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
ARV I++RDAQ+DP A AKLLL ++DRKLVKQTVMTSVYGVT++GAR QI RL
Sbjct: 825 ARVREIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRL 884
Query: 830 KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTP 889
KERG E+ E++ A+CYAAK TL ALGEMF+ AR IMSWLG+CAKIIAS + V+WTTP
Sbjct: 885 KERGTIQEQTEMYRAACYAAKTTLNALGEMFKEARCIMSWLGDCAKIIASNGETVKWTTP 944
Query: 890 LGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
LGLPVVQPYRK GRH VKTSLQ+L L+ + V+V+RQ++AFPPNFVHSLD +HMMMT
Sbjct: 945 LGLPVVQPYRKPGRHLVKTSLQVLALRNLDADQPVLVQRQKSAFPPNFVHSLDSTHMMMT 1004
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
A+AC++AGLTFAGVHDSYWTHA DV++MN +LREKFVELY P+ ENLL SFQ+ FP LV
Sbjct: 1005 ALACQEAGLTFAGVHDSYWTHAGDVEQMNSLLREKFVELYSQPVLENLLKSFQERFPTLV 1064
Query: 1008 FPPLPERGDFDLREVLGSPYFFN 1030
FP +P RGD DL+EVL +PYFFN
Sbjct: 1065 FPEVPARGDLDLKEVLRAPYFFN 1087
>gi|168053868|ref|XP_001779356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669272|gb|EDQ55863.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1088
Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/864 (58%), Positives = 645/864 (74%), Gaps = 21/864 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K + L+MRQ KIETEAW +AA EY+EL+ +MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 225 KEKALRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 248 EQ---ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
EQ E +H+ Y P+ +LPADM+AVITMH+LM LLM+ EHG +VV AA IG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA-- 362
+A+EQEV I+K L +K + + + T + + V D K KL
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 363 ------------VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
V ++V+ + +PWG + KVGSR++EL+ +T+ ++SPADQ A
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 411 DIFPAFTHALRTVSKETKGGSKK-YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWT 469
++ PAF H LR + K + YGVIEC+P V+ L+++ +HMV+PYMPMLV P WT
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G+ G + L S +MRTHGAK+ RDT+ T ++ + + +ALD LG+T+W++NN VL VL
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVL 584
Query: 530 DRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
+++W GGRLADLVD DVPLP+KPE++D ++R W+ + K+ N ERHS RCD ELK
Sbjct: 585 EQMWKDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELK 644
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L+ ARK++DEEGF+YPHN+DFRGRAYP+HP+LNHLGSD+CRGIL+FAEGR LG +GL WL
Sbjct: 645 LAAARKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWL 704
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIHLANLY G V K+S + R+A+ + ++ +FDSAD+PL+G RWWL AEDPFQ LA C++
Sbjct: 705 KIHLANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLD 764
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
+ A++S +PET++SH+PVHQDGSCNGLQHYAALGRD +GA +VNLVA +KPADVYSGIA
Sbjct: 765 IRNAIKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIA 824
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
ARV I++RDAQ+DP A AKLLL ++DRKLVKQTVMTSVYGVT++GAR QI RL
Sbjct: 825 ARVREIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRL 884
Query: 830 KERGAPMEEAELFGASCYAAKV-TLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTT 888
KERG E+ E++ A+CYAAKV TL ALGEMF+ AR IMSWLG+CAKIIAS + V+WTT
Sbjct: 885 KERGTIQEQTEMYRAACYAAKVTTLNALGEMFKEARCIMSWLGDCAKIIASNGETVKWTT 944
Query: 889 PLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
PLGLPVVQPYRK GRH VKTSLQ+L L+ + V+V+RQ++AFPPNFVHSLD +HMMM
Sbjct: 945 PLGLPVVQPYRKPGRHLVKTSLQVLALRNLDADQPVLVQRQKSAFPPNFVHSLDSTHMMM 1004
Query: 947 TAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL 1006
TA+AC++AGLTFAGVHDSYWTHA DV++MN +LREKFVELY P+ ENLL SFQ+ FP L
Sbjct: 1005 TALACQEAGLTFAGVHDSYWTHAGDVEQMNSLLREKFVELYSQPVLENLLKSFQERFPTL 1064
Query: 1007 VFPPLPERGDFDLREVLGSPYFFN 1030
VFP +P RGD DL+EVL +PYFFN
Sbjct: 1065 VFPEVPARGDLDLKEVLRAPYFFN 1088
>gi|255585835|ref|XP_002533595.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
gi|223526524|gb|EEF28786.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
Length = 589
Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/560 (85%), Positives = 524/560 (93%)
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKGAH FLPSYVMRTHGA+QQR+ VK TP++QL+PVFEALDTLG+TKWR+N R+L V+D
Sbjct: 30 YDKGAHLFLPSYVMRTHGARQQREAVKITPREQLQPVFEALDTLGSTKWRINKRILGVVD 89
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
RIW+ GGRL DLVDRNDVPLPEKPETEDEA +RKW+WK+R KKENRERHSQRCD ELKL
Sbjct: 90 RIWNSGGRLGDLVDRNDVPLPEKPETEDEALVRKWKWKLRAAKKENRERHSQRCDTELKL 149
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+VARKMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLK
Sbjct: 150 AVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLK 209
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLANL+AGGVDKLS++GR+AFTENHLDDIFDSAD+PLEG+RWWL AEDPFQCLAVCI+L
Sbjct: 210 IHLANLFAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGKRWWLNAEDPFQCLAVCIDL 269
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
TEALRSSSPETFISH+P+HQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIA
Sbjct: 270 TEALRSSSPETFISHVPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAV 329
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RVL I+++DAQ+DP VFPDAL AK+L+SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK
Sbjct: 330 RVLDIMRKDAQKDPKVFPDALHAKILISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 389
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
ERG ++ E+F ASCYAAKVTLTALGEMF+AAR IMSWLGECAKIIASEN+PVRWTTPL
Sbjct: 390 ERGFIADDTEIFVASCYAAKVTLTALGEMFEAARSIMSWLGECAKIIASENEPVRWTTPL 449
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPVVQPYR GRH +KTSLQ+LTLQ+ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV
Sbjct: 450 GLPVVQPYRNFGRHLIKTSLQVLTLQQETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVT 509
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
C++AGL FAGVHDSYWTHACDVD+MNRILREKFVELYE P+ ENLL+SFQ+SFP L FPP
Sbjct: 510 CKRAGLNFAGVHDSYWTHACDVDKMNRILREKFVELYETPVLENLLESFQQSFPTLSFPP 569
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LPERGDFDL++VL SPYFFN
Sbjct: 570 LPERGDFDLQDVLKSPYFFN 589
>gi|18642494|dbj|BAB84520.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/862 (57%), Positives = 626/862 (72%), Gaps = 24/862 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K R L RQVKIETEAW++AA EYREL+ +MC + LAPNLP+ +SL L WFEPLRD I +
Sbjct: 209 KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILE 268
Query: 248 EQERC---RMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
EQ +H+ Y PY QLPADM+AVITMH+LMGLLM EHG +V+ AA +IG
Sbjct: 269 EQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVVIG 328
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK-------- 356
+A+EQEVRI + + KK + + + GD +N E E RK DL
Sbjct: 329 EAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANN--EELEATRK--ADLKSKKVVRDKV 384
Query: 357 -----KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
+ KL V I+K +PW K+GSR++EL+ +T+++++PA Q D +
Sbjct: 385 KKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGE 444
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGY 471
+ PAF H + + ++ YGVIEC+ LVL ++++ +HMV+PYMPMLV P+ W G+
Sbjct: 445 LRPAFQHKFKN-HVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKGF 503
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
++G + +L S +MRT GAK+QR V TP+K ++ V EAL+ LG T WRVN RVL V+++
Sbjct: 504 NEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVEK 563
Query: 532 IWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
+W GG +ADLV+ +DVP+PE+P+T D+ KW+ V K+ N ERHS RCD ELKL
Sbjct: 564 LWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKLG 623
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
VA+K+ DEE FYYPHN+DFRGRAYPMHP+LNHLG+DLCRG+L FA+G+ LG SGL W+KI
Sbjct: 624 VAKKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIKI 683
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
LANLY G V K+S + R AF E+ +++I DSA++PL+G R WLKAEDPFQ LA CI+L
Sbjct: 684 QLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDLR 743
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
+AL S +PETF+SH+PVHQDGSCNGLQHYAALGRD +GA +VNL+A +KPADVYSGIA R
Sbjct: 744 DALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAER 803
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V +I+++DA ++P +A A+LL Q+DRKLVKQTVMTSVYGVT+IGAR QI RLKE
Sbjct: 804 VKIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLKE 863
Query: 832 RG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
R ++ + + A+CYAAKVTL ALGEMF+ AR IMSWLG+CAKIIA+ VRWT+PL
Sbjct: 864 RSPIAVDPVDTYRAACYAAKVTLDALGEMFKEARCIMSWLGDCAKIIAAAGHTVRWTSPL 923
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
GLP+VQPYRK RH VKTSLQ+L L+ + V+ RQR+AFPPNFVHSLD SHMMMTA
Sbjct: 924 GLPIVQPYRKHSRHLVKTSLQVLALRNTDDNHPVLASRQRSAFPPNFVHSLDSSHMMMTA 983
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+AC KAGLTFAGVHDSYWTHA DV+ MN ILR+ FV+LY+ PI ENLL FQ FP LVF
Sbjct: 984 LACSKAGLTFAGVHDSYWTHAGDVENMNVILRKNFVKLYKQPILENLLLDFQTQFPDLVF 1043
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
P +P RGD DL+EVL SPYFFN
Sbjct: 1044 PEVPARGDLDLKEVLKSPYFFN 1065
>gi|168052876|ref|XP_001778865.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669734|gb|EDQ56315.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1065
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/862 (57%), Positives = 625/862 (72%), Gaps = 24/862 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K R L RQVKIETEAW++AA EYREL+ +MC + LAPNLP+ +SL L WFEPLRD I +
Sbjct: 209 KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILE 268
Query: 248 EQERC---RMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
EQ +H+ Y PY QLPADM+AVITMH+LMGLLM EHG +V+ AA +IG
Sbjct: 269 EQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVVIG 328
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK-------- 356
+A+EQEVRI + + KK + + + GD +N E E RK DL
Sbjct: 329 EAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANN--EELEATRK--ADLKSKKVVRDKV 384
Query: 357 -----KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
+ KL V I+K +PW K+GSR++EL+ +T+++++PA Q D +
Sbjct: 385 KKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGE 444
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGY 471
+ PAF H + + ++ YGVIEC+ LVL ++++ +HMV+PYMPMLV P+ W G+
Sbjct: 445 LRPAFQHKFKN-HVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKGF 503
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
++G + +L S +MRT GAK+QR V TP+K ++ V EAL+ LG T WRVN RVL V+++
Sbjct: 504 NEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVEK 563
Query: 532 IWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
+W GG +ADLV+ +DVP+PE+P+T D+ KW+ V K+ N ERHS RCD ELKL
Sbjct: 564 LWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKLG 623
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
VA K+ DEE FYYPHN+DFRGRAYPMHP+LNHLG+DLCRG+L FA+G+ LG SGL W+KI
Sbjct: 624 VANKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIKI 683
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
LANLY G V K+S + R AF E+ +++I DSA++PL+G R WLKAEDPFQ LA CI+L
Sbjct: 684 QLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDLR 743
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
+AL S +PETF+SH+PVHQDGSCNGLQHYAALGRD +GA +VNL+A +KPADVYSGIA R
Sbjct: 744 DALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAER 803
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V +I+++DA ++P +A A+LL Q+DRKLVKQTVMTSVYGVT+IGAR QI RLKE
Sbjct: 804 VKIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLKE 863
Query: 832 RG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
R ++ + + A+CYAAKVTL ALGEMF+ AR IMSWLG+CAKIIA+ VRWT+PL
Sbjct: 864 RSPIAVDPVDTYRAACYAAKVTLDALGEMFKEARCIMSWLGDCAKIIAAAGHTVRWTSPL 923
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
GLP+VQPYRK RH VKTSLQ+L L+ + V+ RQR+AFPPNFVHSLD SHMMMTA
Sbjct: 924 GLPIVQPYRKHSRHLVKTSLQVLALRNTDDNHPVLASRQRSAFPPNFVHSLDSSHMMMTA 983
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+AC KAGLTFAGVHDSYWTHA DV+ MN ILR+ FV+LY+ PI ENLL FQ FP LVF
Sbjct: 984 LACSKAGLTFAGVHDSYWTHAGDVENMNVILRKNFVKLYKQPILENLLLDFQTQFPDLVF 1043
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
P +P RGD DL+EVL SPYFFN
Sbjct: 1044 PEVPARGDLDLKEVLKSPYFFN 1065
>gi|18077583|emb|CAC95164.1| RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/862 (57%), Positives = 625/862 (72%), Gaps = 24/862 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K R L RQVKIETEAW++AA EYREL+ +MC + LAPNLP+ +SL L WFEPLRD I +
Sbjct: 209 KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILE 268
Query: 248 EQERC---RMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
EQ +H+ Y PY QLPADM+AVITMH+LMGLLM EHG +V+ AA +IG
Sbjct: 269 EQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAVVIG 328
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK-------- 356
+A+EQEVRI + + KK + + + GD +N E E RK DL
Sbjct: 329 EAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANN--EELEATRK--ADLKSKKVVRDKV 384
Query: 357 -----KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
+ KL V I+K +PW K+GSR++EL+ +T+++++PA Q D +
Sbjct: 385 KKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGE 444
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGY 471
+ PAF H + + ++ YGVIEC+ LVL ++++ +HMV+PYMPMLV P+ W G+
Sbjct: 445 LRPAFQHKFKN-HVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKGF 503
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
++G + +L S +MRT GAK+QR V TP+K ++ V EAL+ LG T WRVN RVL V+++
Sbjct: 504 NEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVEK 563
Query: 532 IWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
+W GG +ADLV+ +DVP+PE+P+T D+ KW+ V K+ N ERHS RCD ELKL
Sbjct: 564 LWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKLG 623
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
VA K+ DEE FYYPHN+DFRGRAYPMHP+LNHLG+DLCRG+L FA+G+ LG SGL W+KI
Sbjct: 624 VADKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIKI 683
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
LANLY G V K+S + R AF E+ +++I DSA++PL+G R WLKAEDPFQ LA CI+L
Sbjct: 684 QLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDLR 743
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
+AL S +PETF+SH+PVHQDGSCNGLQHYAALGRD +GA +VNL+A +KPADVYSGIA R
Sbjct: 744 DALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAER 803
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V +I+++DA ++P +A A+LL Q+DRKLVKQTVMTSVYGVT+IGAR QI RLKE
Sbjct: 804 VEIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLKE 863
Query: 832 RG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
R ++ + + A+CYAAKVTL ALGEMF+ AR IMSWLG+CAKIIA+ VRWT+PL
Sbjct: 864 RSPIAVDPVDTYRAACYAAKVTLDALGEMFKEARCIMSWLGDCAKIIAAAGHTVRWTSPL 923
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
GLP+VQPYRK RH VKTSLQ+L L+ + V+ RQR+AFPPNFVHSLD SHMMMTA
Sbjct: 924 GLPIVQPYRKHSRHLVKTSLQVLALRNTDDNHPVLASRQRSAFPPNFVHSLDSSHMMMTA 983
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+AC KAGLTFAGVHDSYWTHA DV+ MN ILR+ FV+LY+ PI ENLL FQ FP LVF
Sbjct: 984 LACSKAGLTFAGVHDSYWTHAGDVENMNVILRKNFVKLYKQPILENLLLDFQTQFPDLVF 1043
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
P +P RGD DL+EVL SPYFFN
Sbjct: 1044 PEVPARGDLDLKEVLKSPYFFN 1065
>gi|79602097|ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 895
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/740 (62%), Positives = 583/740 (78%), Gaps = 17/740 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K+ L+ RQVK ETEAWE+ +EYR+L +MCE+ LAPNLPY+K +FLGWF+PL+D I +
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217
Query: 248 EQ--ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
EQ ++ + K + AYAP+ + LPAD MAVI MHK+MGL+M+G E G +VVQAA IG
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGI 277
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
AIEQEVRIH FL++T+K N ++E+ E++ LRK+V LI+++++ +
Sbjct: 278 AIEQEVRIHNFLKRTRKNNAGDSQEE---------LKEKQLLRKRVNSLIRRKRIIDALK 328
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+VK + KPWG+ +AK+GSR++ELL + AY+Q P Q D+ P+ PAF H +TV+K
Sbjct: 329 VVKSEGT-KPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTK 387
Query: 426 ETKGGSK---KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
GSK +YGVIEC+ L+L GL+++A+HM+IPY+PMLVPP +W GYDKG + FLPSY
Sbjct: 388 YP--GSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSY 445
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+MRTHG+K+Q+D +K K VFEALDTLGNTKWRVN +L V++R+W+ GG +A L
Sbjct: 446 IMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGL 505
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
V+R DVP+PEKP +ED +L+ W+W R K NRERHS RCD+ELKLSVARKMKDEEGF
Sbjct: 506 VNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGF 565
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGR LGKSGLHWLKIHLANLYAGGV+
Sbjct: 566 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVE 625
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLSH+ RLAF ENHLDDI DSA+ P+ G+RWWLKAEDPFQCLA C+ LT+AL+S SP +
Sbjct: 626 KLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSV 685
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISH+P+HQDGSCNGLQHYAALGRD+ AAAVNLVA EKPADVYS I+ RV I+++D+ +
Sbjct: 686 ISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSK 745
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP P A AK+L++QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G +E LF
Sbjct: 746 DPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLF 805
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
A+CY+AKVTL ALGE+F+AAR IMSWLG+CAKIIAS+N PVRW TPLGLPVVQPY +
Sbjct: 806 AAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSE 865
Query: 903 RHTVKTSLQILTLQRETEKV 922
RH ++TSLQ+L LQRE V
Sbjct: 866 RHLIRTSLQVLALQREGNTV 885
>gi|188529544|emb|CAP70041.1| RNA polymerase [Selaginella moellendorffii]
Length = 1002
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/922 (53%), Positives = 645/922 (69%), Gaps = 32/922 (3%)
Query: 116 TSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGR 175
+S V + D W + A EA EE+V ++ E++E+ ++ E + E G
Sbjct: 106 SSRTVFRIDQKWPFQLKAVATEACFGE--EEEVGVLPELEEI-HDISLERSSKFEGGKAL 162
Query: 176 NRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFL 235
R RQ K+E +AW+ A EYR++L++MC +KLAPNLP+ KSL +
Sbjct: 163 KAARARARRLFN-------RQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMV 215
Query: 236 GWFEPLRDAIAKEQ---ERCRMAKHKVAYAPYFDQ--LPADMMAVITMHKLMGLLMTGGE 290
WFEP+RD IAKE E+ + + Y P L AD++AVITMH+L+ L+M +
Sbjct: 216 SWFEPVRDEIAKELKAIEKEEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVD 275
Query: 291 HGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK 350
G R+ A +IGDA+EQE++I + L+K K K E + + E ++KLR+
Sbjct: 276 SGCIRLANTAVLIGDAVEQEIKIRRALKKRKPK-ELAEEAEPPTPEEEKKEYLKDKLRRA 334
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
+ + + V+ I+K D +PW +AK+G R+I+++ ++I P +
Sbjct: 335 IIERPRN-----VKEILKSLDPSQPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGT 389
Query: 411 DIFPAFTHALRTVSKETKGGS-KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWT 469
+I PAF H L K KGG + YG I C+P + ++ +A+ +V+PYMPML+PP W
Sbjct: 390 EIRPAFRHVL----KVPKGGLLRSYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWK 445
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
GY GA+ L S +MRTHG+KQQR+ V+ TP+ QL+ VF ALDTLG W++N V V+
Sbjct: 446 GYHNGAYLHLRSVIMRTHGSKQQREAVRNTPRAQLQQVFRALDTLGAASWKINKEVFEVI 505
Query: 530 DRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
+++WS GG + LVDR DVPLP KP TEDEA++R W+ K+ N ER+SQRCD+ELK
Sbjct: 506 EKLWSAGGGIGGLVDRKDVPLPPKPNTEDEAEMRSWRKVFYKGKRTNSERNSQRCDLELK 565
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L+VAR +KDEE FYYPHN+DFRGRAYPMH +LNHLGSD+CRG+L FA+GR LG +GL WL
Sbjct: 566 LAVARSLKDEECFYYPHNLDFRGRAYPMHAHLNHLGSDVCRGMLLFAKGRPLGPTGLRWL 625
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIH+AN++A G DKL +GR+AF E++L+ + SA++PL+ RWWLKAEDPFQCLA CI+
Sbjct: 626 KIHIANVFANGADKLPFDGRVAFAESNLEHVVASANQPLKN-RWWLKAEDPFQCLAACID 684
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L A+ S +PE +ISH+PVHQDGSCNGLQHYAALGRD GA AVNL+ + PADVYSGIA
Sbjct: 685 LRNAMHSPNPEYYISHLPVHQDGSCNGLQHYAALGRDKTGARAVNLIGADYPADVYSGIA 744
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
ARV +++ DA++DPA A+ AKLL+ VDRKLVKQTVMTSVYGVTY+GAR+QI RL
Sbjct: 745 ARVRTLVEEDARKDPA----AVYAKLLVGHVDRKLVKQTVMTSVYGVTYVGARNQITNRL 800
Query: 830 KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTP 889
+++G ++E L+ CYAAKVTL ALGEMF AR IM+WLG+CAK+IA++ VRW TP
Sbjct: 801 RDKGFILDEPTLYRTGCYAAKVTLNALGEMFGEARLIMNWLGQCAKVIANDGDSVRWITP 860
Query: 890 LGLPVVQPYRKLGRHTVKTSLQILTLQRETEK-VMVKRQRTAFPPNFVHSLDGSHMMMTA 948
LGLPVVQPYR+ GRH VKT LQ L L+ +T++ V+ RQR+AFPPNFVHS+DGSHMMMTA
Sbjct: 861 LGLPVVQPYRRPGRHVVKTCLQCLILRTDTDQPVLAARQRSAFPPNFVHSMDGSHMMMTA 920
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
VAC++AGLTFAGVHDS+WTHA DV+ MN ILREKFVELYE PI ENLL+SFQK +PKL F
Sbjct: 921 VACQEAGLTFAGVHDSFWTHAGDVERMNVILREKFVELYEQPILENLLESFQKRWPKLKF 980
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
P LP RGD DL+EVL SPYFFN
Sbjct: 981 PDLPVRGDLDLKEVLSSPYFFN 1002
>gi|302766019|ref|XP_002966430.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
gi|302792739|ref|XP_002978135.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300154156|gb|EFJ20792.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300165850|gb|EFJ32457.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
Length = 831
Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/843 (56%), Positives = 617/843 (73%), Gaps = 22/843 (2%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ---ER 251
RQ K+E +AW+ A EYR++L++MC +KLAPNLP+ KSL + WFEP+RD IAKE E+
Sbjct: 4 RQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKAIEK 63
Query: 252 CRMAKHKVAYAPYFDQ--LPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQ 309
+ + Y P L AD++AVITMH+L+ L+M + G R+ A +IGDA+EQ
Sbjct: 64 EEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDAVEQ 123
Query: 310 EVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG 369
E++I + L+K K K E + + E ++KLR+ + + + V+ I+K
Sbjct: 124 EIKIRRALKKRKPK-ELAEEAEPPTPEEEKKEYLKDKLRRAIIERPRN-----VKEILKS 177
Query: 370 QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKG 429
D +PW +AK+G R+I+++ ++I P + +I PAF H L K KG
Sbjct: 178 LDPSQPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRHVL----KVPKG 233
Query: 430 GS-KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHG 488
G + YG I C+P + ++ +A+ +V+PYMPML+PP W GY GA+ L S +MRTHG
Sbjct: 234 GLLRSYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVIMRTHG 293
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV 548
+KQQR+ V+ TP+ QL+ VF ALDTLG W++N V V++++WS GG + LVDR DV
Sbjct: 294 SKQQREAVRNTPRAQLQQVFRALDTLGAASWKINKEVFEVIEKLWSAGGGIGGLVDRKDV 353
Query: 549 PLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
PLP KP TEDEA++R W+ K+ N ER+SQRCD+ELKL+VAR +KDEE FYYPHN+
Sbjct: 354 PLPPKPNTEDEAEMRSWRKVFYKGKRTNSERNSQRCDLELKLAVARSLKDEECFYYPHNL 413
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGRAYPMH +LNHLGSD+CRG+L FA+GR LG +GL WLKIH+AN++A G DKL +G
Sbjct: 414 DFRGRAYPMHAHLNHLGSDVCRGMLLFAKGRPLGPTGLRWLKIHIANVFANGADKLPFDG 473
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
R+AF E++L+ + SA++PL+ RWWLKAEDPFQCLA CI+L A+ S +PE +ISH+PV
Sbjct: 474 RVAFAESNLEHVVASANQPLKN-RWWLKAEDPFQCLAACIDLRNAMHSPNPEYYISHLPV 532
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
HQDGSCNGLQHYAALGRD GA AVNL+ + PADVYSGIAARV +++ DA++DPA
Sbjct: 533 HQDGSCNGLQHYAALGRDKTGARAVNLIGADYPADVYSGIAARVRTLVEEDARKDPA--- 589
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYA 848
A+ AKLL+ VDRKLVKQTVMTSVYGVTY+GAR+QI RL+++G ++E L+ CYA
Sbjct: 590 -AVYAKLLVGHVDRKLVKQTVMTSVYGVTYVGARNQITNRLRDKGFILDEPTLYRTGCYA 648
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT 908
AKVTL ALGEMF AR IM+WLG+CAK+IA++ VRW TPLGLPVVQPYR+ GRH VKT
Sbjct: 649 AKVTLNALGEMFGEARLIMNWLGQCAKVIANDGDSVRWITPLGLPVVQPYRRPGRHVVKT 708
Query: 909 SLQILTLQRETEK-VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWT 967
LQ L L+ +T++ V+ RQR+AFPPNFVHS+DGSHMMMTAVAC++AGLTFAGVHDS+WT
Sbjct: 709 CLQCLILRTDTDQPVLAARQRSAFPPNFVHSMDGSHMMMTAVACQEAGLTFAGVHDSFWT 768
Query: 968 HACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPY 1027
HA DV+ MN ILREKFVELYE PI ENLL+SFQK +PKL FP LP RGD DL+EVL SPY
Sbjct: 769 HAGDVERMNVILREKFVELYEQPILENLLESFQKRWPKLKFPDLPVRGDLDLKEVLSSPY 828
Query: 1028 FFN 1030
FFN
Sbjct: 829 FFN 831
>gi|21425673|emb|CAC95024.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 562
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/565 (80%), Positives = 515/565 (91%), Gaps = 3/565 (0%)
Query: 311 VRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ 370
VRIH FLEKTKK+ K+K+ E+G+ VT EQEKLRKKVT+L+KKQKL AV +IV+ Q
Sbjct: 1 VRIHNFLEKTKKQKAEKDKQKEDGEH---VTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQ 57
Query: 371 DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGG 430
DD KPWGQDA+AKVGSR+IELL QTAYIQ PA+QLA PPDI PAF H++RTV+KETK
Sbjct: 58 DDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSA 117
Query: 431 SKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAK 490
S++YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKWTGYDKG H +LPSYVMRTHGA+
Sbjct: 118 SRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGAR 177
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL 550
QQR+ VKR + QL+PVFEALDTLG+TKWR+N RVLSV+DRIW+ GGRLADLVDR+D PL
Sbjct: 178 QQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPL 237
Query: 551 PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDF 610
PE+P+TEDEA KW+WKV++VKKENRERHSQRCDIELKL+VARKMKDEEGF+YPHNVDF
Sbjct: 238 PEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDF 297
Query: 611 RGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRL 670
RGRAYPMHP+LNHLGSD+CRG+L FAEGR LG+SGL WLKIHLANL+AGGV+KLS EGR+
Sbjct: 298 RGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRI 357
Query: 671 AFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQ 730
AFTENH+DDIFDSADKPLEGRRWWL AEDPFQCLAVCINL+EA+RSSSPET ISHIPVHQ
Sbjct: 358 AFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVHQ 417
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
DGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAARVL I++RDAQRDPA FPDA
Sbjct: 418 DGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDA 477
Query: 791 LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAK 850
+RA+ L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA +++ELFGA+CYAAK
Sbjct: 478 VRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAK 537
Query: 851 VTLTALGEMFQAARGIMSWLGECAK 875
VTLTALGEMF+AAR IM+WLGECAK
Sbjct: 538 VTLTALGEMFEAARSIMTWLGECAK 562
>gi|224127290|ref|XP_002329241.1| predicted protein [Populus trichocarpa]
gi|222870695|gb|EEF07826.1| predicted protein [Populus trichocarpa]
Length = 543
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/527 (85%), Positives = 492/527 (93%), Gaps = 1/527 (0%)
Query: 504 LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLR 563
E +F+ALDTLGNT+WRVN RVLSV+DRIWS GG LADLVD +DVPLPEKPETEDEA L+
Sbjct: 18 FELIFQALDTLGNTRWRVNKRVLSVVDRIWSNGGCLADLVDHSDVPLPEKPETEDEALLK 77
Query: 564 KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNH 623
KW+WK+R VKKEN+ERH+QRCDIELKL+VARKMKDEEGFYYPHN+DFRGRAYPMHPYLNH
Sbjct: 78 KWKWKLRGVKKENKERHAQRCDIELKLAVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNH 137
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
LGSDLCRGILEFAEGR LGKSGL WLKIH+ANL+AGGVDKLS+EGR+AFTENHLDDIFD
Sbjct: 138 LGSDLCRGILEFAEGRPLGKSGLRWLKIHIANLFAGGVDKLSYEGRIAFTENHLDDIFDC 197
Query: 684 ADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAAL 743
DKPL+G+RWWL AEDPFQ LAVCINLTEALRSSSPET+ISHIPVHQDGSCNGLQHYAAL
Sbjct: 198 TDKPLDGKRWWLHAEDPFQFLAVCINLTEALRSSSPETYISHIPVHQDGSCNGLQHYAAL 257
Query: 744 GRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRK 803
GRD LGAAAVNLVA EKPADVYSGIAARVL I++RDAQ+DP VFPDALRAK L++QVDRK
Sbjct: 258 GRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMRRDAQKDPDVFPDALRAKELINQVDRK 317
Query: 804 LVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAA 863
LVKQTVMTSVYGVTYIGARDQIKRRLKERG EE+++FG SCYAAKVTLTALGEMF+AA
Sbjct: 318 LVKQTVMTSVYGVTYIGARDQIKRRLKERGI-TEESDIFGCSCYAAKVTLTALGEMFEAA 376
Query: 864 RGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM 923
R IM+WLG+CAKIIASEN+PVRWTTPLGLPVVQPYRKLG ++KTSLQ+L LQ+ET+KVM
Sbjct: 377 RSIMNWLGDCAKIIASENEPVRWTTPLGLPVVQPYRKLGTRSIKTSLQVLILQKETDKVM 436
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
V+RQRTAFPPNFVHSLD SHMMMTAVAC+ AGL FAGVHDSYWTHACDVDEMNRILREKF
Sbjct: 437 VQRQRTAFPPNFVHSLDSSHMMMTAVACKGAGLNFAGVHDSYWTHACDVDEMNRILREKF 496
Query: 984 VELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
VELYE PI ENLL+SF+KSFP L FPPLP+RGDF+LREVL SPYFFN
Sbjct: 497 VELYETPILENLLESFEKSFPTLSFPPLPDRGDFELREVLESPYFFN 543
>gi|168052257|ref|XP_001778567.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670021|gb|EDQ56597.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 861
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/860 (53%), Positives = 599/860 (69%), Gaps = 12/860 (1%)
Query: 182 RGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPL 241
R G K + L+ RQ+ ETEAW A +Y E + +MC +KLAPNLP + L LGW+EPL
Sbjct: 3 RKKGHNKLQELRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPL 62
Query: 242 RDAIAKEQ---ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298
RDAIA+EQ + +Y P+ QLP +AVITMH L+ L+M+ + G +V+Q
Sbjct: 63 RDAIAEEQRAFSELEFRGERASYGPFLCQLPPSQLAVITMHCLLALVMSNEKMGYVKVIQ 122
Query: 299 AACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTV------TTEQEKLRKKVT 352
AA IG+A+EQEV I K KKNETK K + D +T+ T +L + T
Sbjct: 123 AALHIGEAVEQEVLIRKLRIGKAKKNETKRKGITKDDGISTIESGKVELTTSPELPTQAT 182
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
+ K +KL R +++ PWG AKVGSR++EL +TA I+ P+D
Sbjct: 183 GMQKLRKLRLWRSMLQKASGSDPWGPTIYAKVGSRLLELFMETAVIRVPSDD-PHVDASF 241
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P F H + S +GV+ECNPLVL+ ++++ +++++PYMPM+ P W G+
Sbjct: 242 EPVFQHTNKKFVCTNGRSSTGFGVVECNPLVLEQIDKSVKYVIMPYMPMVSKPKHWKGFH 301
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
G + FL S +MRTHG+K+Q D K TP++ ++ +F+AL+ LG T WRVN VL+VL++I
Sbjct: 302 DGGYLFLKSSIMRTHGSKEQYDIFKNTPRENMKKIFQALNVLGETGWRVNKPVLAVLEQI 361
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
W GGRLA+LVD DV +P KPET + +L+ W+ +V VK+ N ER+S RCD+ELKL+V
Sbjct: 362 WKEGGRLANLVDAEDVLVPAKPETNNLDELKSWRREVGIVKRTNYERYSLRCDVELKLAV 421
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
ARK+ +E+ FY PHN+DFRGRAYPMHP LNHLGSD+CRG+LEFA+GR LG++GL WLKIH
Sbjct: 422 ARKLVNEDAFYLPHNLDFRGRAYPMHPNLNHLGSDMCRGVLEFAKGRPLGETGLRWLKIH 481
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LANLY G + KLS + R+A + H+DD+FDSA+ P+ G RWWLKAEDPFQ LA CI++
Sbjct: 482 LANLYGGSISKLSFDARVAHVDTHMDDVFDSAENPMNGNRWWLKAEDPFQFLAACIDIRN 541
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
A++S +P+T+ S +PVHQDGSCNGLQHYAALGRD +GA VNL+A + PADVYS IA RV
Sbjct: 542 AVKSGNPKTYNSFLPVHQDGSCNGLQHYAALGRDRIGAGTVNLLAGDVPADVYSAIADRV 601
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
I++ A ++P A A++LL Q+DRKLVKQT+MTSVYGVT++GAR QI RLKER
Sbjct: 602 HRTIEKAALKNPEASKHAAIARVLLGQIDRKLVKQTIMTSVYGVTFVGARIQILNRLKER 661
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
G + ELF AS YAAKVTL ALGE F+ AR IM+WL ECA+IIA V+WTTPLGL
Sbjct: 662 GIIQDGGELFKASVYAAKVTLDALGEGFREARCIMNWLSECAQIIAHSGNSVKWTTPLGL 721
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
VVQPYR RH VKT+LQ L ++ V+ RQR+AF PNF+HSLD +HMM+TA+A
Sbjct: 722 EVVQPYRNPSRHLVKTALQDLHIRSVDVDSPVLKTRQRSAFAPNFIHSLDSTHMMLTALA 781
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
+AG++FAGVHDS+WTHA DVD +N++ REKFVELY PI ENLL FQ+ + L FPP
Sbjct: 782 SNQAGISFAGVHDSFWTHAGDVDVLNKLTREKFVELYSYPILENLLLGFQRRYADLTFPP 841
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
+PERG D+REVL +PYFFN
Sbjct: 842 VPERGVLDIREVLKAPYFFN 861
>gi|357502599|ref|XP_003621588.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355496603|gb|AES77806.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 895
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/562 (80%), Positives = 512/562 (91%), Gaps = 2/562 (0%)
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
+DKG + FLPSYVMRTHG KQQR+ VK+ P+KQLEPVFEALDTLGNTKWRVNN+VLSV+D
Sbjct: 334 FDKGGYLFLPSYVMRTHGVKQQREAVKKVPRKQLEPVFEALDTLGNTKWRVNNKVLSVVD 393
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
RIW+ GGRLA LVDRNDV +PE+ E++DEA+ +KW+WKV++VKKENRER+S RCD ELKL
Sbjct: 394 RIWAGGGRLAGLVDRNDVEIPEELESDDEAEKKKWKWKVKSVKKENRERYSLRCDTELKL 453
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+VARKMKDEE FYYPHN+DFRGRAYPMHP+LNHLGSD+CRGILEFA+GR LGKSGLHWLK
Sbjct: 454 AVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDVCRGILEFADGRPLGKSGLHWLK 513
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLANLY GGVDKLS+EGR+ F ENHLD+IFDSA++P+EGRRWWL AEDPFQ LA C+ L
Sbjct: 514 IHLANLYGGGVDKLSNEGRITFVENHLDEIFDSAEQPMEGRRWWLNAEDPFQFLAACMTL 573
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
TEAL+ S+PE+FISHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAA
Sbjct: 574 TEALKISTPESFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAA 633
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RVL I++ DAQ+DP F +A AK+L++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLK
Sbjct: 634 RVLAIMKIDAQKDPETFSEARHAKILVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLK 693
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
ER A +++ELFGA+CYAAKVTLTAL EMF+ AR IM+WLG+CAK+IASEN+PV WTTPL
Sbjct: 694 ERDAIADDSELFGAACYAAKVTLTALQEMFEGARSIMNWLGDCAKVIASENEPVCWTTPL 753
Query: 891 GLPVVQPYRKLGRH--TVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
GLPVVQPYR GRH +VKTSLQ+LTL+RET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA
Sbjct: 754 GLPVVQPYRYQGRHIVSVKTSLQMLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA 813
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+AC+KAGL+FAGVHDSYWTHACDVD MNRILREKFVELYE PI ENLL+SFQ+SFP L F
Sbjct: 814 IACKKAGLSFAGVHDSYWTHACDVDNMNRILREKFVELYETPILENLLESFQESFPSLEF 873
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
PPLPERG+ DL EVL SPYFFN
Sbjct: 874 PPLPERGNLDLNEVLESPYFFN 895
>gi|224127286|ref|XP_002329240.1| predicted protein [Populus trichocarpa]
gi|222870694|gb|EEF07825.1| predicted protein [Populus trichocarpa]
Length = 528
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/560 (75%), Positives = 474/560 (84%), Gaps = 32/560 (5%)
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKGAH FLPSYVMR HGAKQQR+ VKR P+KQL+ VFEALDTLGNT+WRVN RVLSV+D
Sbjct: 1 YDKGAHLFLPSYVMRIHGAKQQREAVKRAPRKQLQAVFEALDTLGNTRWRVNKRVLSVVD 60
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
RIWS GG LADLVD +DVPLPEKPETEDEA L+KW+WK+R VKKEN+ERH+QRCDIELKL
Sbjct: 61 RIWSNGGCLADLVDHSDVPLPEKPETEDEALLKKWKWKLRGVKKENKERHAQRCDIELKL 120
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+VARKMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLK
Sbjct: 121 AVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IH+ANL+AGGVDKLS+EGR+AFTENHLDDIFDSADKPL+G+RWWL AEDPFQ LAVCINL
Sbjct: 181 IHIANLFAGGVDKLSYEGRIAFTENHLDDIFDSADKPLDGKRWWLHAEDPFQFLAVCINL 240
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
TEALRSSSPET+ISHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAA
Sbjct: 241 TEALRSSSPETYISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAA 300
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
R+ + V + +RA++++S + +K + + G
Sbjct: 301 RLFNYM--------CVCVEWVRAQIIISYKNFFHMKNVISQASKG--------------- 337
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
G + E F +VTLTALGEMF+AAR IM+WLG+CAKIIASEN+PVRWTTPL
Sbjct: 338 --GIKLFELAWF-------QVTLTALGEMFEAARSIMNWLGDCAKIIASENEPVRWTTPL 388
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPVVQPYRKLG ++KTSLQ+L LQ+ET+KVMV+RQRTAF PNFVHSLD SHMMMTAVA
Sbjct: 389 GLPVVQPYRKLGTRSIKTSLQVLILQKETDKVMVQRQRTAFSPNFVHSLDSSHMMMTAVA 448
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
C+ AGL FAGVHDSYWTHACDVDEMNRILREKFVELYE PI ENLL+SF+KSFP L FPP
Sbjct: 449 CKGAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFEKSFPTLSFPP 508
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LP+RGDF+LREVL SPYFFN
Sbjct: 509 LPDRGDFELREVLESPYFFN 528
>gi|21425677|emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
Length = 557
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/560 (73%), Positives = 484/560 (86%), Gaps = 3/560 (0%)
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKG + FLPSY+MRTHG+++Q+D V+ P KQ++ V+EALDTLG+TKWRVN R+L+V++
Sbjct: 1 YDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVE 60
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
IW+ GG +A LVDR DVP+PE ++D +++KW+WKVR KK N+E HSQRCD ELKL
Sbjct: 61 SIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKL 120
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
SVARK+KDEEGFYYPHN+DFRGRAYPMHP+LNHL SDLCRGILEFAEGR LGKSGL WLK
Sbjct: 121 SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLA+LYAGGV+KL ++ RLAF ENH+ DI DSA+ PL G RWWL AEDPFQCLA CINL
Sbjct: 181 IHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINL 240
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
+EAL+SSSP T ISH+P+HQDGSCNGLQHYAALGRD++ AAAVNLVA EKPADVY+ IA
Sbjct: 241 SEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIAL 300
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RV II+ D+ +DPA+ P+AL AKLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+
Sbjct: 301 RVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 360
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
E+G ++ LF ASCY VTL ALGE+FQAARG M+WLG+CAK+IA ENQPVRWTTPL
Sbjct: 361 EKGLIDDDRLLFTASCY---VTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPL 417
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPVVQPY K RH ++TSLQIL LQRE + V V++QRTAFPPNFVHSLDGSHMMMTAVA
Sbjct: 418 GLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVA 477
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
CR AGL FAGVHDS+WTHACDVD+MNRILREKFVELY +PI E+LL++FQKS+P L FPP
Sbjct: 478 CRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPP 537
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LP+RGDF+LREVL SPYFFN
Sbjct: 538 LPKRGDFNLREVLESPYFFN 557
>gi|110740738|dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 786
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/641 (62%), Positives = 502/641 (78%), Gaps = 17/641 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K+ L+ RQVK ETEAWE+ +EYR+L +MCE+ LAPNLPY+K +FLGWF+PL+D I +
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217
Query: 248 EQ--ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
EQ ++ + K + AYAP+ + LPAD MAVI MHK+MGL+M+G E G +VVQAA IG
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGI 277
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
AIEQEVRIH FL++T+K N ++E+ E++ LRK+V LI+++++ +
Sbjct: 278 AIEQEVRIHNFLKRTRKNNAGDSQEE---------LKEKQLLRKRVNSLIRRKRIIDALK 328
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+VK + KPWG+ +AK+GSR++ELL + AY+Q P Q D+ P+ PAF H +TV+K
Sbjct: 329 VVKSEGT-KPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTK 387
Query: 426 ETKGGSK---KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
GSK +YGVIEC+ L+L GL+++A+HM+IPY+PMLVPP +W GYDKG + FLPSY
Sbjct: 388 YP--GSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSY 445
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+MRTHG+K+Q+D +K K VFEALDTLGNTKWRVN +L V++R+W+ GG +A L
Sbjct: 446 IMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGL 505
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
V+R DVP+PEKP +ED +L+ W+W R K NRERHS RCD+ELKLSVARKMKDEEGF
Sbjct: 506 VNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGF 565
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGR LGKSGLHWLKIHLANLYAGGV+
Sbjct: 566 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVE 625
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLSH+ RLAF ENHLDDI DSA+ P+ G+RWWLKAEDPFQCLA C+ LT+AL+S SP +
Sbjct: 626 KLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSV 685
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISH+P+HQDGSCNGLQHYAALGRD+ AAAVNLVA EKPADVYS I+ RV I+++D+ +
Sbjct: 686 ISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSK 745
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARD 823
DP P A AK+L++QVDRKLVKQTVMTSVYGVTY+GAR+
Sbjct: 746 DPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGARE 786
>gi|290976388|ref|XP_002670922.1| predicted protein [Naegleria gruberi]
gi|284084486|gb|EFC38178.1| predicted protein [Naegleria gruberi]
Length = 933
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/917 (40%), Positives = 538/917 (58%), Gaps = 78/917 (8%)
Query: 139 VSSTDVEEDVSIVEEI---QELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRM-LKM 194
++T EE+ +I E I Q L E + +R+ N + + +G + L +
Sbjct: 70 TTATLFEENPAIEEGIVVSQGLYGEQAAKLERDSRNQIQKKFEQFIGEIGQQIDEVKLLL 129
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
+Q ++ET + + A YR+ L + + LP K + L W+EPL I ++Q+
Sbjct: 130 KQKELETRSMDIAKARYRKDLKSATSRNQSACLPPAKKIMLEWYEPLTKIIREKQDEVNF 189
Query: 255 A----------------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298
+ + A Y + A+ +A+IT+H+L+ + E G + V
Sbjct: 190 SCSKKKSSSTNTTTTTSQDNFAIPLYLTSISAEKLAIITLHELLASCLK--ERGGSPVSS 247
Query: 299 AACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQ 358
+ IGDAI+ E+ + EK K+ N K + + + + + I K
Sbjct: 248 ISYQIGDAIQAEINV----EKLKRTNYFK------------LIIKNQMIYHNINK-ISKL 290
Query: 359 KLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH 418
KL +++ + ++ ++GS +I+L TA++ L P + PAF H
Sbjct: 291 KL----------NEYVTFTKEELVQLGSYLIQLALSTAHVP-----LISNPKETVPAFIH 335
Query: 419 ALRTVSKETKGGSKKYGVIEC--NPLVLKGLERTARHMVIP-YMPMLVPPVKWTGYDKGA 475
R +++ SK GV+E N L L G E A+ ++ P ++PMLVPP WT G
Sbjct: 336 --RNITR----NSKIIGVVEPDDNLLHLIGREHVAQEILYPNHLPMLVPPNPWTSSTAGG 389
Query: 476 HFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
+ L +MRT G+ Q T+K +L + L+TL T+WR+N V + ++W+
Sbjct: 390 YIALKVLIMRTRGSHLQAYTLKSA---ELNDLLSGLNTLNETRWRINPTVYETVLKVWNS 446
Query: 536 GGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
GG L +L R D LPE+PET+D +KW+ V +K NR HS RCD+ LKL VA
Sbjct: 447 GGGLGELPSRFDDTLPEEPETDDPEIKKKWKRTVEKIKTHNRNLHSLRCDMLLKLKVAED 506
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
KD FY+PHN+DFRGRAYP+ P+LNHLG+D+ RG+L F +G +GK G+ WLKIHLAN
Sbjct: 507 FKDNT-FYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWLKIHLAN 565
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
LY G DKL + R+ F + ++++I DSAD+PLEG RWWLK+E+P+Q LA C+ L E LR
Sbjct: 566 LY--GKDKLPFDERVQFVDEYINEIIDSADQPLEGNRWWLKSENPWQTLAACVELAECLR 623
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
S +PE F+SH+P+ DGSCNGLQHYAALGRD LGA VNL+ KP DVY G+ V
Sbjct: 624 SPNPEEFLSHLPIQMDGSCNGLQHYAALGRDNLGALHVNLLPTSKPMDVYVGVLEVVKKH 683
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
I+RD + + AKLL V R +KQTVMTSVYGVT++GAR+QI++RLKE+
Sbjct: 684 IERDMKAGNKL------AKLLHGNVYRSTIKQTVMTSVYGVTFVGAREQIQKRLKEKKE- 736
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
+ E ++F + Y A +TL +LGE+F +A+ IM WL +CA +I+S + PV W TPLGLPV+
Sbjct: 737 VPEDDVFACASYLASITLKSLGEVFSSAQNIMEWLNDCALLISSSDTPVSWITPLGLPVI 796
Query: 896 QPYRKLGRHTVKTSLQILTLQRETEKVMVK--RQRTAFPPNFVHSLDGSHMMMTAVACRK 953
QPYR VKT +Q +TL ++K+ V RQ++AFPPN+VHSLD SHM MTA AC+K
Sbjct: 797 QPYRSKRSKIVKTVMQSITLADSSDKLPVSRTRQKSAFPPNYVHSLDSSHMFMTASACQK 856
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPE 1013
G+ FA VHDS+W +A +VD MN I+RE+F+ L+ P+ E L +F +P++ FPPLP+
Sbjct: 857 EGIEFAAVHDSFWCNAGNVDRMNTIIREQFINLHSQPLLEELNATFTNLYPQIQFPPLPK 916
Query: 1014 RGDFDLREVLGSPYFFN 1030
+G DL VL +PYFF+
Sbjct: 917 KGSLDLTRVLDAPYFFD 933
>gi|75706720|gb|ABA25911.1| putative mitochondrial T-odd phage-like single-subunit RNA polymerase
[Naegleria sp. TES-2005]
Length = 968
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/916 (39%), Positives = 526/916 (57%), Gaps = 86/916 (9%)
Query: 144 VEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGS--GKYRMLKMRQVKIET 201
+EE +SI L E + +RE + + + M G+ ++L ++Q ++ET
Sbjct: 110 IEEGISIT---SGLYGEQAAQLERENRSHIQKKFEQFMTDMSEQIGEVKLL-LKQKELET 165
Query: 202 EAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHK--- 258
+ + A YR+ L + LP K + L W+EPL I ++Q+ + K
Sbjct: 166 RSMDIAKERYRKDLKSATNRNQGACLPPAKKILLEWYEPLTKLIREKQDEVNFSAKKKST 225
Query: 259 -------------------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
+ + + A+ +A+IT+H+L+ + E + V
Sbjct: 226 ISAADSASAANTTSGAVDHFSIPLHLTSISAEKLAIITLHELLASCLR--ERAGSAVSSL 283
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+ ++GDAI+ E+ +EK K+ N K + + + + + L K K
Sbjct: 284 SYVVGDAIQAEIN----MEKLKRTNHFK------------LILKNQMVYHNINKL-SKLK 326
Query: 360 LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHA 419
L +++ + ++ ++GS +I+L TA + L D P + PAF H
Sbjct: 327 L----------NEYVSFSKEELIRLGSYLIQLTLDTAKVP-----LVDNPKESVPAFIH- 370
Query: 420 LRTVSKETKGGSKKYGVIEC--NPLVLKGLERTARHMVIP-YMPMLVPPVKWTGYDKGAH 476
K K G+IE N + L G E + ++ P ++PMLVPP WT G +
Sbjct: 371 -----KNVSRAGKVIGMIEPDENLIQLVGREHLTQEILFPNHLPMLVPPNPWTSSVSGGY 425
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG 536
L +MRT G+ Q +K +L + L+TL +KW VN +V + R+W+ G
Sbjct: 426 IALKVMIMRTRGSHLQSYILKSA---ELTDLLSGLNTLNESKWIVNPKVYETVLRVWNEG 482
Query: 537 GRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
G L +L R D LPE+PET+D +KW+ +K+ NR HS RCD+ LKL VA
Sbjct: 483 GGLGELPSRFDDALPEEPETDDPEVKKKWKRTCEKIKQHNRNLHSLRCDMLLKLKVAEDF 542
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
KD FY+PHN+DFRGRAYP+ P+LNHLG+D+ RG+L F +G +GK G+ WLKIHLANL
Sbjct: 543 KDN-AFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWLKIHLANL 601
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
Y G DKL + R+ F + ++ ++FDSAD PL+G RWWL++E+P+Q LA C+ LT LRS
Sbjct: 602 Y--GKDKLPFDERVQFIDQNMAEVFDSADVPLDGNRWWLQSENPWQTLAACVELTNCLRS 659
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
PE +IS++P+ DGSCNGLQHYAALGRD LGA VNL+ KP DVY G+ V I
Sbjct: 660 EKPEEYISNLPIQMDGSCNGLQHYAALGRDNLGALHVNLLPTSKPMDVYVGVLEVVKKHI 719
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
+RD + + AKLL V R +KQTVMTSVYGVT++GAR+QI++RLKE+ +
Sbjct: 720 ERDMKAGNKL------AKLLHGNVYRSTIKQTVMTSVYGVTFVGAREQIQKRLKEKKE-V 772
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
E ++F + Y A +TL +LGE+F +A+ IM WL +CA +I+S + PV W TPLGLPV+Q
Sbjct: 773 PEDDVFACASYLASITLKSLGEVFSSAQNIMEWLNDCALLISSSDTPVSWITPLGLPVIQ 832
Query: 897 PYRKLGRHTVKTSLQILTLQRETEKVMVK--RQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
PYR VKT +Q +TL ++K+ V RQ++AFPPN+VHSLD SHM MTA AC K
Sbjct: 833 PYRSKRTKIVKTVMQSVTLFDSSDKLPVSKTRQKSAFPPNYVHSLDSSHMFMTATACHKE 892
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPER 1014
G+ FA VHDS+W +A +VD MN+I+RE+F+ L+ P+ E L +F + +P + FPPLP++
Sbjct: 893 GIEFAAVHDSFWCNAGNVDRMNKIIREQFINLHSQPLLEELYATFTRLYPNIQFPPLPKK 952
Query: 1015 GDFDLREVLGSPYFFN 1030
G DL VL +PYFF+
Sbjct: 953 GTLDLNRVLDAPYFFD 968
>gi|412990986|emb|CCO18358.1| predicted protein [Bathycoccus prasinos]
Length = 1109
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 370/944 (39%), Positives = 524/944 (55%), Gaps = 113/944 (11%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
RQ ++E E+ YRE+ M + NLP ++ L ++EPL + +EQ
Sbjct: 171 RQRRVENESVNDEIKRYREMSEQMAQVGAGANLPAVRQLLTSFYEPLMVGVEREQNMISE 230
Query: 255 AK---HKVAYAPYFDQLPADMMAVITMHKLMGLLMTG----------------GEHGRAR 295
+ Y PY L AD +AVI++H ++ +LM G GE G +
Sbjct: 231 GVPGFDRRVYGPYLQLLGADKIAVISLHTIISMLMRGVEKTRGDVFRDHSREHGEAGSVK 290
Query: 296 VVQAACIIGDAIEQEVRIHKFLEKTKKKN--------------ETKNKEDEEGDESNTVT 341
V+ A +G IE EV + + + K + ET N+E G+
Sbjct: 291 FVRLASSLGRVIEAEVNLSRLQTREKLLSARYRAGLINMEDIVETFNQERHAGENEMIAE 350
Query: 342 TEQEK--------LRKKVTDLIKK-------------QKLPAVRRI---VKGQDDFKPWG 377
E+E+ +R+K +LIK+ +KL +VR + K D WG
Sbjct: 351 REREEKIANIDREIREK--NLIKESDIRSTMLQRDSTKKLKSVRAVSEQAKKALDNADWG 408
Query: 378 QDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI-FPAFTHALRTVSKETKGGSKK--- 433
KVG+ +I ++ I+ P + A+ I PAF H +G +K
Sbjct: 409 SVLHLKVGAAIIAIVLDVCKIKVPGPETAETGEKIEVPAFYHDYSLEPNAYQGWKQKASP 468
Query: 434 ---YGVIECNPLVLKGLERT----ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT 486
G + + + + AR + + PM+VPP W Y+KG + S VMR
Sbjct: 469 NNRSGTVHWHDSFFRFVHSATLARARSAITRHKPMIVPPRPWESYNKGGYLNSNSVVMRG 528
Query: 487 HGAK------QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW------- 533
+ ++ Q + +R + + VF AL+ LG+T W +N +L V++++W
Sbjct: 529 NYSRDGPSDGQMKLLAERV--GEYDNVFGALNVLGSTAWVINTDILEVIEQVWREKKYAG 586
Query: 534 SCGGRLADLVDRNDVPLPEKPETE-----------------DEAQLRKWQWKVRNVKKEN 576
GG +A++ R ++ LP P +E ++ ++ K+ N
Sbjct: 587 GFGGGIANIPPRAELNLPNWPSSEFRLRRERNGPLYATALPSSREVGEFMRAFNRAKQTN 646
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
RE HSQRCD +KL VAR+MK+EE Y+PHNVDFRGRAY MH +LNH+GSD CRG L+FA
Sbjct: 647 RELHSQRCDFAIKLQVAREMKNEERIYFPHNVDFRGRAYTMHAHLNHIGSDFCRGTLKFA 706
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL--EGRRWW 694
+ + LG++GL WL I ANLY GG DKL R+ F++ +L+ I SA+ PL EG WW
Sbjct: 707 DAKPLGENGLDWLFIQCANLYGGGADKLPLHQRVEFSKLNLEKIKKSAEDPLGPEGS-WW 765
Query: 695 LKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVN 754
A+DP+QCLA C+ + +A+ S P ++ ++PVHQDGSCNGLQHYAALGRD G AVN
Sbjct: 766 QDADDPWQCLATCMEIIKAINSKDPAKYMCNLPVHQDGSCNGLQHYAALGRDFAGGRAVN 825
Query: 755 LVAREKPADVYSGIAARVLVIIQRDAQ----RDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
LV ++ ADVY+GIA + I+Q+D + +D AKLL+ QVDRKLVKQTVM
Sbjct: 826 LVPADRGADVYTGIANVLRDIVQKDIENCDYKDEESVERMKLAKLLIDQVDRKLVKQTVM 885
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
TSVYGVT++GAR QI RLKER E+ + + YAAK TL AL +MFQ AR +M WL
Sbjct: 886 TSVYGVTFVGARMQISARLKERVGFESESVRYRVAAYAAKRTLDALNDMFQNAREVMGWL 945
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK--RQR 928
CA ++ N PV+WTTPLGLPV+QPYR + +V+T LQ L+ E EK V +QR
Sbjct: 946 THCASVVTKVNAPVQWTTPLGLPVLQPYRNQTQKSVRTLLQTFVLRSEDEKQKVNKSKQR 1005
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
+AFPPN++HS+D +HMMMTA+ C +A +TFAGVHDS+WTHA DV M+RILREKF+EL+E
Sbjct: 1006 SAFPPNYIHSIDSTHMMMTALECSRANITFAGVHDSFWTHAGDVPVMSRILREKFIELHE 1065
Query: 989 MPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
P+ +NL + + ++P++ F P PE GD D+ V S YFF+
Sbjct: 1066 TPLLDNLYEELKSTYPEVAGEFLPPPEYGDLDIETVRDSAYFFS 1109
>gi|145350935|ref|XP_001419848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580080|gb|ABO98141.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 922
Score = 634 bits (1634), Expect = e-178, Method: Compositional matrix adjust.
Identities = 364/901 (40%), Positives = 506/901 (56%), Gaps = 49/901 (5%)
Query: 166 QREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAP 225
+R+ G R A G+ R +Q + E A E+ Y+EL +
Sbjct: 35 RRQLRRAGGHEARERAEDADEGERRAQTRKQREAENLAVEREVMRYKELARKTFAAGIGA 94
Query: 226 NLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKV---AYAPYFDQLPADMMAVITMHKLM 282
LP ++ L ++ PL +A+ +EQE+ R V Y Y L D +AV+T+H +
Sbjct: 95 QLPVVQKLLASFYVPLVEALTEEQEKIRGNVPGVDRRVYGHYLGLLEPDKLAVLTLHATL 154
Query: 283 GLLMTGG--EHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNT- 339
LM G +G A+ + A +G A++ EV + + K E + E N
Sbjct: 155 STLMKGDGRNNGAAKFISVADQVGSAVQAEVNLERMRSAEKAAKEAFRRSRLVNTEGNVK 214
Query: 340 -VTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398
+ E D K + +V + + + WG++ R K+G+ ++ L TA I
Sbjct: 215 EIDDAAEHRINLALDTSKMNTIKSVSKHARQALENAEWGREIRLKIGTVLLTALMNTAKI 274
Query: 399 QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVI 456
P ++ PAF H + YG++ + + + + E R ++
Sbjct: 275 GVPDEK---GELLTLPAFYHDYKEAG---------YGMLHWHDSIYRFINTETMTRAALV 322
Query: 457 P--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ--QRDTVKRTPKK---------- 502
P + PM++PP W Y+KG + + MR + + R + +K
Sbjct: 323 PVRHFPMVIPPRYWERYNKGGYLRADNLCMRGKYSNEGPSRAQIAALEEKAREADASGEP 382
Query: 503 -QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE--TEDE 559
Q +PV +AL+ LG T W++N VL +++ +W+ GG +A++ R ++ LP P +
Sbjct: 383 VQYQPVLDALNALGQTAWQINTDVLPIVEEVWARGGGVAEVPLRAELQLPRWPGGGLPGK 442
Query: 560 AQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
++ + VR KK N E HSQRCD +KL VAR+MK+E Y+PHN+DFRGRAY MH
Sbjct: 443 GEVIDFLQSVRKTKKSNMELHSQRCDFLIKLQVAREMKNEPNIYFPHNLDFRGRAYTMHV 502
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDD 679
+LNH+GSDLCRG+L F E + LG+ GL W+ I A L+ G DKL + R+ F ++ ++D
Sbjct: 503 HLNHIGSDLCRGLLRFNEKKPLGERGLRWMHIQCATLFGNGADKLPMDERVQFIKDRIED 562
Query: 680 IFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQH 739
+ SA PL WW +AE+P+QCLA CI L +AL S P F+S++PVHQDGSCNGLQH
Sbjct: 563 VRASAQDPLAKDAWWQEAEEPWQCLATCIELDKALELSDPTQFMSNLPVHQDGSCNGLQH 622
Query: 740 YAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR-DPAVFPDALRAKLLLS 798
YAALGRD G AVNLV ++ ADVY+GIA + I+ D + D D AKL +S
Sbjct: 623 YAALGRDLHGGEAVNLVPADRGADVYTGIANVLKRIVAEDIKLIDSEDEEDVNNAKLAMS 682
Query: 799 ---QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL--FGASCYAAKVTL 853
+DRKLVKQTVMTSVYGVT+IGAR QI RL+ER A ME+ EL + S YAAK TL
Sbjct: 683 LAQHIDRKLVKQTVMTSVYGVTFIGARAQIYSRLREREA-MEDNELLRYRVSNYAAKRTL 741
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
AL MF AR +M WL CA I S +PVRWTTPLGLPVVQPY V+T LQ
Sbjct: 742 DALNNMFSNARDVMGWLTTCATIATSAGEPVRWTTPLGLPVVQPYHSQRTKRVRTILQSF 801
Query: 914 TLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACD 971
+L+ E + VM +QR+AFPPN++HS+D SHMM TA+AC AGLTFAGVHDS+WTHA D
Sbjct: 802 SLKVHDEQQPVMKVKQRSAFPPNYIHSIDSSHMMRTAIACVDAGLTFAGVHDSFWTHATD 861
Query: 972 VDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFF 1029
VD MN ILREKF+E+++ P+ ENL F+ ++P + FP P GD DL V S YFF
Sbjct: 862 VDTMNVILREKFIEVHKEPLLENLYHEFRANYPDVADEFPQPPAPGDLDLDVVQDSVYFF 921
Query: 1030 N 1030
+
Sbjct: 922 S 922
>gi|255080246|ref|XP_002503703.1| predicted protein [Micromonas sp. RCC299]
gi|226518970|gb|ACO64961.1| predicted protein [Micromonas sp. RCC299]
Length = 899
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 367/896 (40%), Positives = 501/896 (55%), Gaps = 72/896 (8%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K R L+ RQ + E A ++ Y+E + LP + L G+F PL AI
Sbjct: 23 KMRELEERQRRNEILAVDREVERYKEEARITRRRGGGAELPLGRRLLQGFFAPLTSAIRL 82
Query: 248 EQERCRMAKHKV---AYAPYFDQLPADMMAVITMHKLMGLLMTG---------GEHGRAR 295
EQE R+ V Y P+ L D +AVIT+H ++ LM G + G +
Sbjct: 83 EQEHVRLKVRGVDRSNYGPFLLMLNPDKLAVITLHTVISQLMKGEQMFGEPNEAQAGMCK 142
Query: 296 VVQAACIIGDAIEQEVRIHKFLEK---TKKKNETKNKEDEEGDESNTVTTEQEKLRKKVT 352
V+A ++G +++ EV + + ++ TKK+ D V E K V
Sbjct: 143 FVRAVEMLGQSVQAEVNLARLRQRARLTKKRYLESKNGPHVHDRFMKVNMESLKTLTTVR 202
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
V R+ + + WG R+KVG+ +++LL TA I+ P D
Sbjct: 203 ---------GVARLARTALNDSDWGGVTRSKVGAALVKLLLTTARIRVPG---PDGELIE 250
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA--RHMVIP--YMPMLVPPVKW 468
PAF H K + +YGVI + ++ A R + P YMPM+ PP W
Sbjct: 251 VPAFYHDY------VKHKAHRYGVISWHDAFFTFMDDEAMIRATLSPVRYMPMVTPPRPW 304
Query: 469 TGYDKGAHFFLPSYVMR----THGAKQQRDTVKRTPKK---------QLEPVFEALDTLG 515
T ++ G + S VMR THG +++ + + +PV +AL+ LG
Sbjct: 305 TRFNAGGYLRTESIVMRGHYTTHGPSKRQMLALHGEQSGAELDGRAAKFQPVLDALNVLG 364
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET-----EDEAQLRKWQWKVR 570
T WR+N VL V++ +W+ GG AD+ R +VP P P QL R
Sbjct: 365 RTAWRINEDVLRVMEEVWATGGGRADVPPRENVPDPTWPANPYGLRRSRGQLAATALPSR 424
Query: 571 N-----------VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
K+ NRE HSQRCD +KL VA++M+DE+ Y+PHN+DFRGRAY MH
Sbjct: 425 QDVAGFIHSLNRTKQRNRELHSQRCDFLIKLQVAKEMRDEDRIYFPHNIDFRGRAYTMHV 484
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDD 679
+LNHLGSD+CRG L FA+ R LG GL WL I ANLYAGGVDKL + R + E+ +
Sbjct: 485 HLNHLGSDICRGALVFADARPLGNDGLDWLYIQAANLYAGGVDKLPMDERRQWIEDRVHL 544
Query: 680 IFDSADKPL-EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQ 738
+ SA PL +WL AEDP+QCLA C + A S P ++ +PVHQDGSCNGLQ
Sbjct: 545 LEQSARDPLGPDGGFWLDAEDPWQCLACCFEIERARASGDPPAYMCRLPVHQDGSCNGLQ 604
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS 798
HYAALGRD G VNL+ R++P DVY+GIA + I+ DA+ AL A L
Sbjct: 605 HYAALGRDEAGGEQVNLMPRDRPGDVYTGIANVLKRIVAEDAKNPEDPETQAL-AIALAP 663
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGE 858
VDRKLVKQTVMTSVYGVT+IGAR QI+ RLKERGA +E + + YAA+ TL AL
Sbjct: 664 HVDRKLVKQTVMTSVYGVTHIGARQQIQNRLKERGAVEDENLRYKMANYAARRTLDALAN 723
Query: 859 MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE 918
+F AR +M+WL ECA+++ S+ + V WTTPLGLPVVQPYR + ++T +Q TLQ +
Sbjct: 724 LFVNARDVMAWLAECARVVCSQGRAVEWTTPLGLPVVQPYRVKSQRMIRTLVQSFTLQFD 783
Query: 919 TEK--VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMN 976
++ V +QR+AFPPNF+HS+D +HMM TA+AC +AGLTFAGVHDS+WTHA DV EM+
Sbjct: 784 NDENSVAKAKQRSAFPPNFIHSIDSAHMMKTALACHEAGLTFAGVHDSFWTHAGDVPEMS 843
Query: 977 RILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
R +REKF+EL+ P+ E L + ++ +P++ PP P G+ D+ +V S YFF+
Sbjct: 844 RHIREKFIELHSEPLLEMLYEELKEKYPEVAHEIPPPPPMGNMDIEQVKDSIYFFS 899
>gi|89148146|gb|ABD62816.1| mitochondrial single-subunit RNA polymerase [Polysphondylium
pallidum]
Length = 862
Score = 623 bits (1607), Expect = e-175, Method: Compositional matrix adjust.
Identities = 345/882 (39%), Positives = 522/882 (59%), Gaps = 86/882 (9%)
Query: 186 SGKYRMLKMRQVKIETE----AWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPL 241
S KY+ L ++K+ET+ + A YR+LL D + + L +K++ W++PL
Sbjct: 30 SAKYKEL-YEKIKLETDFEISVTDTARKAYRQLLNDTSMIQRSTGLKSIKNVMFQWYDPL 88
Query: 242 RDAIAKEQERCRMAKHKV--------------------AYAPYFDQLPADMMAVITMHKL 281
+E + + A V ++ +LP + +I ++++
Sbjct: 89 IKHTTQELKSFQQANASVLLSEDPEAEAEALNPLSRVPSHVEVLTRLPMKKLCLIALNQM 148
Query: 282 MGLLMTGGEHGRARVVQAACI--IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNT 339
+ +++ + G + + + IG+++ E ++ + L+K + + + G + T
Sbjct: 149 VSEILSDPQRG---TIMTSIVENIGESVLAEYQM-QLLKKYDRLQYKRLMKPFNGAVA-T 203
Query: 340 VTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ 399
V T Q +R+ +L ++ D KVGS +++ + + I
Sbjct: 204 VRTIQNYMRRAHNNLEQES--------------------DTITKVGSFMVKSIMDSCMIN 243
Query: 400 SPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYM 459
D + + PAF + R +KKYGVI C+ V ++ H ++ M
Sbjct: 244 KYID--GEDIDEKVPAFYYKYRY------NNNKKYGVISCHDNVYSLMDEG--HFLVEAM 293
Query: 460 -----PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
PM+VPP WT +KG + P ++MRT+G+K Q+ ++ ++ L ++E L+ L
Sbjct: 294 NARLLPMVVPPQPWTHPNKGCYLQYPCFIMRTNGSKLQKTSLYQS---DLTNIYEGLNVL 350
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETED---EAQLRKWQWKVRN 571
G W+ N +++S+L W GG +ADL R D LPE P ED E R + K+R
Sbjct: 351 GEVPWKTNEKMMSILLEAWEKGGGIADLPSRYDFELPESPSQEDLQDEKVKRDFNKKLRK 410
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
VK N + HS RCD KL+VA++++ E FY+PHNVDFRGR+YP+ P+LNH+GSD CR
Sbjct: 411 VKGANNDLHSLRCDTLYKLNVAKQLQ-EYTFYFPHNVDFRGRSYPIPPHLNHMGSDFCRS 469
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
L+FAE + LG+ G WLK+ +ANL+ GVDK+S E R+AFT ++++I+DSAD+PL+G+
Sbjct: 470 TLKFAEEKELGERGFEWLKVQVANLF--GVDKVSFEDRVAFTMENIENIYDSADRPLDGK 527
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
RWWLKA+ P+Q LA CI LT+A+RS +P TF S +P+HQDG+CNGLQHYAALG D LGA
Sbjct: 528 RWWLKADSPWQTLAACIELTDAIRSGNPTTFKSSLPIHQDGTCNGLQHYAALGGDELGAL 587
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ KP DVY+G+A V I+ D A+ D L AKLL +++RK++KQTVMT
Sbjct: 588 KVNLLPSPKPQDVYTGVAQMVAQIVHED-----ALAGDEL-AKLLDGKIERKIIKQTVMT 641
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
SVYGVT++GAR QI+ L ++ ++EA LF A+ Y +K T +L +MF AR IM+WL
Sbjct: 642 SVYGVTFVGARMQIENALSDK-YQIDEATLFKATTYLSKTTFASLDKMFIGARSIMAWLA 700
Query: 872 ECAKIIASEN-QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQR 928
+CA +I+ + + V W TPLGLPVVQPYRK G+ +VKT + + + + + V ++QR
Sbjct: 701 QCAGLISKQTGECVAWYTPLGLPVVQPYRKGGKVSVKTIMNDYLMVEDNDHLPVDSRKQR 760
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
+AFPPNF+HSLD +HM +TA+ C+K G+TFA VHDS+WTHA +D MN +LR +FVEL+
Sbjct: 761 SAFPPNFIHSLDSTHMFLTAIQCKKKGITFASVHDSFWTHASTIDTMNTMLRHQFVELHS 820
Query: 989 MPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L + F +P + PP+P RG DL++V S YFF+
Sbjct: 821 QPILERLREWFNHRYPTVNIPPVPNRGSLDLKKVRDSKYFFH 862
>gi|75301087|sp|Q8L6J2.1|RPO2A_TOBAC RecName: Full=DNA-directed RNA polymerase 2A; AltName:
Full=NictaRpoT2-syl; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2A
gi|21425675|emb|CAC95025.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 332
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/332 (86%), Positives = 316/332 (95%)
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
DPFQCLAVCINL+EA+RSSSPET +SHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 60
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
EKPADVYSGIAARVL I++RDAQRDPA FPDA+RA++L++QVDRKLVKQTVMTSVYGVTY
Sbjct: 61 EKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTY 120
Query: 819 IGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
IGARDQIKRRLKERGA +++ELFGA+CYAAKVTLTALGEMF+AAR IM+WLGECAKIIA
Sbjct: 121 IGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIA 180
Query: 879 SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHS 938
SEN+PVRWTTPLGLPVVQPYRK+GRH +KTSLQILTLQRETEKVMVKRQRTAFPPNF+HS
Sbjct: 181 SENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHS 240
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LDGSHMMMTAVACR+AGL FAGVHDSYWTHACDVD++NRILREKFVELYE PI E LL+S
Sbjct: 241 LDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLES 300
Query: 999 FQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FQ S+P L+FPPLPERGDFD+R+VL SPYFFN
Sbjct: 301 FQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 332
>gi|440790817|gb|ELR12085.1| DNAdependent RNA polymerase [Acanthamoeba castellanii str. Neff]
Length = 965
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 356/893 (39%), Positives = 504/893 (56%), Gaps = 105/893 (11%)
Query: 190 RMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ 249
R L+ + + ET++ EKA Y+++ + + LA L + WFEPL AI EQ
Sbjct: 124 RELENLEYEWETKSVEKAVERYKKISKSLKQLGLAFELLQGNQILGHWFEPLCAAIRAEQ 183
Query: 250 ERC--RMAKHKVAYAP-----------------YFDQLPADMMAVITMHKLMGLLMTGGE 290
+ + A +P Y +P + +AVIT+H+ M ++
Sbjct: 184 NAALLKTSAADAAASPTKGKKKTQKAEDRELSAYLVTIPPEKLAVITIHETMCEILKSHH 243
Query: 291 HGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK 350
A +G A+E E + L K K + +N+ S T T +Q
Sbjct: 244 PEGAPFAALVVAVGRAVEYEYNCER-LAKEGWKPQLRNR-------SATPTKQQ------ 289
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI------------ 398
+ LI+ Q + Q + WG AK+GS +++ L TA I
Sbjct: 290 ICSLIRTQS--------RAQFEDASWGAALHAKIGSLLVQQLLGTATIARKAEEADVAAA 341
Query: 399 -QSPADQLADAPPD-----------IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKG 446
SPA L+ AP + PAF H + K G + C+ VL
Sbjct: 342 QSSPARLLSGAPRKRPAFVTKEEALLEPAFNH------HQAMLRGKLTGFLGCHEQVLAL 395
Query: 447 LERTARH---MVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQ 503
+E M YMPMLV P W ++G + + V+R G++ Q + ++
Sbjct: 396 MEHEEVQRGVMQARYMPMLVEPQPWVAPNQGGYLVARTQVLRAKGSRMQTEVLRSA---S 452
Query: 504 LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET--EDEAQ 561
++ V+E L+ L +T WR+NNR+ V+ W GG +ADL R ++P E P D
Sbjct: 453 MDKVYECLNLLSSTPWRINNRMHEVICEAWDNGGGIADLPSRTNLPELEPPADYYSDLEV 512
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
+K+ + + K N HS RCD VA++ +D FYYPHN+DFRGR YP+ P+L
Sbjct: 513 KQKFDRERKKAKIANYNLHSLRCD------VAKECQDRT-FYYPHNMDFRGRTYPIPPHL 565
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
NHLG DLCRG+L FAEG+ LG+ LK+HLAN++ G DK++ E R+ F EN+++ I
Sbjct: 566 NHLGQDLCRGLLTFAEGKPLGE-----LKVHLANVF--GNDKITFEDRVRFVENNMEHIM 618
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
DSA PL G+RWWLKA+ P+QCLA I L A S PET++S +P+HQDGSCNGLQHYA
Sbjct: 619 DSASNPLGGQRWWLKADKPWQCLAASIELINAYNSGQPETYVSTLPIHQDGSCNGLQHYA 678
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVD 801
ALG D +GA VNL+ E+P DVYSG+ V+ ++ DA + A+ LL +VD
Sbjct: 679 ALGGDEMGARQVNLLPSERPQDVYSGVVELVVRRLEDDAANGVEI------AQRLLGKVD 732
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQ 861
RK++KQTVMTSVYGVT+IGAR QI+ LK++G + + ++F AS Y A T +++ EMF
Sbjct: 733 RKVIKQTVMTSVYGVTFIGARQQIENALKDKGK-VSDDDMFLASRYLATSTFSSIKEMFS 791
Query: 862 AARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHT--VKTSLQILTLQRET 919
AR IM+WL +CA +IA + +PV W TP+GLPVVQPYR G+ T V T+LQ + L +E
Sbjct: 792 GAREIMTWLSDCATLIAKQGKPVTWVTPMGLPVVQPYRTKGKQTQTVVTALQNVMLVKEE 851
Query: 920 EK---VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMN 976
V ++QRTAFPPN+VHSLD +HMM+TA+ C +AGLT+A VHDSYWTHA VD MN
Sbjct: 852 NDSLPVNTRKQRTAFPPNYVHSLDSTHMMLTALQCHEAGLTYASVHDSYWTHASSVDTMN 911
Query: 977 RILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
ILR FV+L+ P+ ++LL F++++P + FPP+P +GD DL+E++ SPYFF
Sbjct: 912 HILRRTFVDLHSQPLLDDLLAHFKRTYPGIEFPPVPPKGDLDLKEIINSPYFF 964
>gi|308808155|ref|XP_003081388.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
gi|116059850|emb|CAL55557.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
Length = 973
Score = 610 bits (1573), Expect = e-171, Method: Compositional matrix adjust.
Identities = 359/910 (39%), Positives = 506/910 (55%), Gaps = 90/910 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
+Q + E A E+ Y+E + LP ++ L ++ PL DAI +E E+ +
Sbjct: 80 KQREAENLACEREVARYKEFARKTFAAGIGAQLPVVQKLLASFYVPLVDAIKEEHEKIKS 139
Query: 255 AKHKV---AYAPYFDQLPADMMAVITMHKLMGLLMTG---------------GEHGRARV 296
V Y Y L + +AV+T+H + LM G G A+
Sbjct: 140 NVPGVDRRVYGHYLALLEPEKLAVLTLHTTLSTLMKGDLRLDVPIFRGDDDTAASGSAKF 199
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEE----GDESNTVTTEQEKLRKKVT 352
+ A +G ++ EV + + K E K ++ D N + + E+L ++
Sbjct: 200 ITVAEQVGIVVQAEVNLGRMRAAEKIAKEAYKKSRQQTTLTADGGNAASKDVEELVEQRI 259
Query: 353 DLI----KKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA 408
+L K + +V + + + WG++ R KVG+ ++ L TA I P + +
Sbjct: 260 NLTLDTSKMNTIKSVSKHARNALENAEWGREIRVKVGTVLLNALMNTAKIGVPEE---NG 316
Query: 409 PPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIP--YMPMLVP 464
PAF H R +GG YG++ + + + + E R ++P + PM+VP
Sbjct: 317 GVLTLPAFYHDYR------EGG---YGMLHWHDSIYRFINTETMTRAALVPVKHFPMIVP 367
Query: 465 PVKWTGYDKGAHFFLPSYVMRTHGAKQ--QRDTVKRTPKKQLE-----------PVFEAL 511
P +W Y+ G + + MR + + R V+ K E PV +AL
Sbjct: 368 PREWVRYNNGGYLRANTLCMRGKYSNEGPSRAQVQALEAKAREAELKNEPVLYQPVLDAL 427
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETE-------------- 557
+ LG T W+VN VL +++ +W+ GG +A++ R ++ LP P
Sbjct: 428 NALGRTPWQVNTDVLPIVEEVWARGGGIAEVPLRAELQLPRWPGGSYALRSDKNRFQLLA 487
Query: 558 ----DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
+ ++ ++ VR KK N E HSQRCD +KL VAR+MK+E Y+PHN+DFRGR
Sbjct: 488 SGLPGKGEVIEFLQSVRKTKKSNMELHSQRCDFLIKLQVAREMKNEPNIYFPHNLDFRGR 547
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AY MH +LNH+GSDLCRG+L F+E + LG+ GL W+ I A L+ G DKL + R+ F
Sbjct: 548 AYTMHVHLNHIGSDLCRGLLRFSEKKPLGERGLRWMYIQCATLFGNGADKLPMDERVQFI 607
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
+ ++ + SA PL WW AE+P+QCLA CI L +AL P F+S++PVHQDGS
Sbjct: 608 VDQIEQVRASAQDPLAKGAWWQDAEEPWQCLATCIELDKALELEDPTQFLSNLPVHQDGS 667
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA-------ARVLVIIQRDAQRDPAV 786
CNGLQHYAALGRD G AVNLV ++ ADVY+GIA A + +I D + D A
Sbjct: 668 CNGLQHYAALGRDLHGGEAVNLVPADRGADVYTGIANVLKRIVADDIKLIDSDNEEDVA- 726
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL--FGA 844
+A A L +DRKLVKQTVMTSVYGVT+IGAR QI RL+ER ME+ EL +
Sbjct: 727 --NAKLAMALAHHIDRKLVKQTVMTSVYGVTFIGARAQIYSRLREREV-MEDNELLRYRV 783
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRH 904
S YAA+ TL AL MF AR +M WL +CA I + +PVRWTTPLGLPVVQPY +
Sbjct: 784 STYAARRTLDALNNMFSNARDVMGWLTDCAAIATATGEPVRWTTPLGLPVVQPYHRKSTK 843
Query: 905 TVKTSLQILTLQRETEK--VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
V+T LQ T++ + +K VM +QR+AFPPN++HS+D SHMM TAVAC AGLTFAGVH
Sbjct: 844 RVRTILQSFTIKTDDDKQPVMKVKQRSAFPPNYIHSIDSSHMMKTAVACVDAGLTFAGVH 903
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLR 1020
DS+WTHACD+D MN+ILREKF+E++ P+ ENL + ++S+P + FP P+ GD DL
Sbjct: 904 DSFWTHACDIDTMNKILREKFIEVHSEPLLENLYEELRESYPDVADKFPRPPKPGDLDLN 963
Query: 1021 EVLGSPYFFN 1030
V S YFF+
Sbjct: 964 VVRDSVYFFS 973
>gi|303279985|ref|XP_003059285.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459121|gb|EEH56417.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 838
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 341/841 (40%), Positives = 493/841 (58%), Gaps = 65/841 (7%)
Query: 231 KSLFLGWFEPLRDAIAKEQERCRM---AKHKVAYAPYFDQLPADMMAVITMHKLMGLLMT 287
++ + EPL AI KEQ R + Y P+ L D +AVIT+H ++ LM
Sbjct: 22 RNFLHNFLEPLSRAIEKEQAEIRKKVPGADRTNYGPFMLMLNPDKLAVITLHAVISQLMM 81
Query: 288 G----------GEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDES 337
G G+ G+++ V+ +G+A++ EV + + K + K K+ + E
Sbjct: 82 GDDRVKFSGDNGQVGKSKFVRVVERLGEAVQAEVNLSRL--KQRGKVRPKDPSERERRFR 139
Query: 338 NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAY 397
K K+T + K RR + D WG AR K+GS + +LL +TA
Sbjct: 140 EETAGVSAKSLSKLTTVRSVAKF--ARRALNDSD----WGMTARVKLGSVLAKLLVETAK 193
Query: 398 IQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLE----RTARH 453
I+ P + + +I PAF H V+++ ++YG++ +P +E R A+
Sbjct: 194 IEVPDPESGEL--EIKPAFEHHYEYVNRQ-----QRYGMVSWHPAFFDYIEHEDMRHAQM 246
Query: 454 MVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTH---------------GAKQQRDTVKR 498
++ YMPM+ PP W+ +D+G + ++VMR + G +++ D+
Sbjct: 247 SLVRYMPMVTPPRPWSRFDQGGYLCSETFVMRGNYTRLGPSWGQIMALLGEQKRSDSDGE 306
Query: 499 TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETED 558
Q PV +AL+ LG T W VN R + V+ ++W GG +A + R V P P+ +
Sbjct: 307 CASYQ--PVLDALNVLGKTPWVVNERTVDVMQKVWDDGGGIAGVPPRRTVDEPVWPDPGE 364
Query: 559 EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMH 618
KVR VK+ENRE HSQRCD +KL VA++M+DEE ++PHN+DFRGRAY MH
Sbjct: 365 YVNA-----KVR-VKRENRELHSQRCDFLIKLKVAQEMRDEEKIFFPHNIDFRGRAYTMH 418
Query: 619 PYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA-GGVDKLSHEGRLAFTENHL 677
+LNH+GSD+CRG L F E R LG++GL WL + ANLYA GGVDKL + R + + L
Sbjct: 419 AHLNHIGSDVCRGALLFQEARPLGENGLDWLYVQAANLYAAGGVDKLPLDERREWMKTRL 478
Query: 678 DDIFDSADKPL----EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
D I SA PL +WL+AE+P+QCLA I + A+ S P ++ +PVHQDGS
Sbjct: 479 DRIKASARDPLCADDANCAFWLEAENPWQCLATFIEIAAAVDSGDPASYACRLPVHQDGS 538
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD G VNL R+ P DVY+G+A + ++ DA D + A A
Sbjct: 539 CNGLQHYAALGRDIGGGEQVNLTPRDSPGDVYTGVANVLKRMVAEDAA-DASDPETAATA 597
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
L +DRKLVKQTVMTSVYGVT++GAR QI+ RL+ERGA +E+ + + YA++ TL
Sbjct: 598 AALAPHIDRKLVKQTVMTSVYGVTHVGARQQIQSRLRERGAIEDESLRYRTANYASRRTL 657
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
AL +F AR +MSWLGECA++++ +PV+WTTP+GLPVVQPY+ R V+T +Q
Sbjct: 658 DALSNLFVNAREVMSWLGECARVVSKGGKPVQWTTPMGLPVVQPYKAPSRKVVRTIVQSF 717
Query: 914 TLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACD 971
LQ ++E + ++Q++AFPPNF+HS+D +HMM TA+AC++ + FAGVHDS+WTHA D
Sbjct: 718 VLQYDSEGSAIQKQKQKSAFPPNFIHSVDSAHMMKTALACQRRDIAFAGVHDSFWTHARD 777
Query: 972 VDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFF 1029
VD MN ++R+ FVEL+ P+ L + ++++P+ P P G+ DL EV S YFF
Sbjct: 778 VDAMNEVIRDTFVELHSEPLMTTLYEELRETYPEAADEIPKPPPLGELDLNEVKKSRYFF 837
Query: 1030 N 1030
+
Sbjct: 838 S 838
>gi|281210629|gb|EFA84795.1| DNA-dependent RNA polymerase [Polysphondylium pallidum PN500]
Length = 1010
Score = 603 bits (1555), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/620 (47%), Positives = 417/620 (67%), Gaps = 32/620 (5%)
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYM-----PMLVPPVKW 468
PAF + R +KKYGVI C+ V ++ H ++ M PM+VPP W
Sbjct: 270 PAFYYKYRY------NNNKKYGVISCHDNVYSLMDEG--HFLVEAMNARLLPMVVPPQPW 321
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
T +KG + P ++MRT+G+K Q+ ++ ++ L ++E L+ LG W+ N +++S+
Sbjct: 322 THPNKGCYLQYPCFIMRTNGSKLQKTSLYQS---DLTNIYEGLNVLGEVPWKTNEKMMSI 378
Query: 529 LDRIWSCGGRLADLVDRNDVPLPEKPETED---EAQLRKWQWKVRNVKKENRERHSQRCD 585
L W GG +ADL R D LPE P ED E R + K+R VK N + HS RCD
Sbjct: 379 LLEAWEKGGGIADLPSRYDFELPESPSQEDLQDEKVKRDFNKKLRKVKGANNDLHSLRCD 438
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
KL+VA++++ E FY+PHNVDFRGR+YP+ P+LNH+GSD CR +L+FAE + LG+ G
Sbjct: 439 TLYKLNVAKQLQ-EYTFYFPHNVDFRGRSYPIPPHLNHMGSDFCRSMLKFAEEKELGERG 497
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
WLK+ +ANL+ GVDK+S E R+AFT ++++I+DSAD+PL+G+RWWLKA+ P+Q LA
Sbjct: 498 FEWLKVQVANLF--GVDKVSFEDRVAFTMENIENIYDSADRPLDGKRWWLKADSPWQTLA 555
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
CI LT+A+RS +P TF S +P+HQDG+CNGLQHYAALG D LGA VNL+ KP DVY
Sbjct: 556 ACIELTDAIRSGNPTTFKSSLPIHQDGTCNGLQHYAALGGDELGALKVNLLPSPKPQDVY 615
Query: 766 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
+G+A V I+ D A+ D L AKLL +++RK++KQTVMTSVYGVT++GAR QI
Sbjct: 616 TGVAQMVAQIVHED-----ALAGDEL-AKLLDGKIERKIIKQTVMTSVYGVTFVGARMQI 669
Query: 826 KRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN-QPV 884
+ L ++ ++EA LF A+ Y +K T +L +MF AR IM+WL +CA +I+ + + V
Sbjct: 670 ENALSDK-YQIDEATLFKATTYLSKTTFASLDKMFIGARSIMAWLAQCAGLISKQTGECV 728
Query: 885 RWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGS 942
W TPLGLPVVQPYRK G+ +VKT + + + + + V ++QR+AFPPNF+HSLD +
Sbjct: 729 AWYTPLGLPVVQPYRKGGKVSVKTIMNDYLMVEDNDHLPVDSRKQRSAFPPNFIHSLDST 788
Query: 943 HMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKS 1002
HM +TA+ C+K G+TFA VHDS+WTHA +D MN +LR +FVEL+ PI E L + F
Sbjct: 789 HMFLTAIQCKKKGITFASVHDSFWTHASTIDTMNTMLRHQFVELHSQPILERLREWFNHR 848
Query: 1003 FPKLVFPPLPERGDFDLREV 1022
+P + PP+P RG DL++V
Sbjct: 849 YPTVNIPPVPNRGSLDLKKV 868
>gi|81373966|gb|ABB71761.1| mitochondrial DNA-directed RNA polymerase [Physarum polycephalum]
Length = 997
Score = 600 bits (1547), Expect = e-168, Method: Compositional matrix adjust.
Identities = 345/862 (40%), Positives = 497/862 (57%), Gaps = 55/862 (6%)
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI- 245
KY++ Q +E A ++A YR+ L + + +L + + W+ P RD+I
Sbjct: 173 AKYQL----QADLELNAIDQATEYYRKALDGILRARQGASLGPTRRIIDSWYGPFRDSIN 228
Query: 246 -AKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
A + R + H + L +D + VIT+H+ +G+L+ E +Q A +G
Sbjct: 229 AAVRKMSARASSHSLV--ANLKLLSSDKLPVITLHQTLGMLLANTE--GVPFMQVAFAVG 284
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR 364
A++ EV + + K+ + K + +T ++ K T +KK +
Sbjct: 285 RAVQAEVNFERMKAEDKQAFRSLLKS------KSGITVTLVNIKAKYT--LKKHDWDSKT 336
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQ--TAYIQSPADQLADAPPDIFPAFTHALRT 422
+ G K AK+ V ++L++ + S QLAD + AF H +
Sbjct: 337 IVQLGAFLLKHLM--LSAKIEKNVDKVLSKANNLAVSSSERQLADD--EYVSAFVHYYKF 392
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTARHMV-----IPYMPMLVPPVKWTGYDKGAHF 477
+ + +++ G+++C+ + K ++ H++ +PM+V PV W G +
Sbjct: 393 YRQGST--TRRQGLLKCHENIFKYVDDG--HVIKEVLDARLLPMVVKPVPWVSPTVGGYL 448
Query: 478 FLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
++PS +MR + Q ++ L VF AL+ LG T WRVN V ++ ++W GG
Sbjct: 449 YVPSVLMRAQEHQAQYASLWNA---DLTTVFAALNALGETGWRVNEEVYHIVKKVWDDGG 505
Query: 538 RLADLVDRNDVPLPEKPE---TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
LA L R D+ P+ P+ T DE++ R W+ R +++ N + +S RCD KLSVA
Sbjct: 506 GLAALPTRTDITFPDPPDDLDTNDESK-RTWKKTERKIRQLNNDLNSLRCDTTYKLSVAE 564
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
+ + FY PHNVDFRGRAYP+ P+LN LGSD+CRG+L F E + LG +GL WLKIHLA
Sbjct: 565 TLLHMD-FYLPHNVDFRGRAYPIPPHLNQLGSDMCRGLLVFKEKKPLGPTGLRWLKIHLA 623
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NLY GVDK+ + R+ F + ++D +FDSAD PL+G +WW+ A+DP+QCL C L +AL
Sbjct: 624 NLY--GVDKVPFDARVNFVDKNIDKVFDSADHPLDGEQWWVGADDPWQCLGTCFELAKAL 681
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
RS +PE F+S +PVHQDGSCNGLQHYAALG D +G VNLV + P DVYSG+A V
Sbjct: 682 RSPNPEEFLSCMPVHQDGSCNGLQHYAALGGDEIGGRKVNLVPSDAPQDVYSGVATVVAK 741
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ DA + KLL ++DRK+VKQTVMTSVYGVTYIGAR QI L ++
Sbjct: 742 RVHEDAIAGHEL------GKLLDGKLDRKVVKQTVMTSVYGVTYIGARLQIHNALSDKDI 795
Query: 835 PM-EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLP 893
++ +L+ AS Y T AL +MF AR IM WL +CA+IIA PV W TPLGLP
Sbjct: 796 EWRDDDQLYHASAYITNHTFEALNQMFLGARNIMKWLADCARIIAKNKDPVAWVTPLGLP 855
Query: 894 VVQPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 951
+VQPY K + VKT +Q +L+ R+ V +QR+AFPPN+VHSLD HMM+TA+ C
Sbjct: 856 IVQPYVKNQQFLVKTVVQKVLLSDPRKDLPVNTIKQRSAFPPNYVHSLDSCHMMLTAIEC 915
Query: 952 RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPK---LVF 1008
+K G+++ VHDSYWTHAC VD+MN ILR++FVEL+ P+ L + F K + K + F
Sbjct: 916 QKKGISYTSVHDSYWTHACTVDQMNVILRDQFVELHSQPLLHRLREWFIKRYGKDGRVEF 975
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
PP+PERG DL+ V S YFF+
Sbjct: 976 PPVPERGPLDLQVVKQSKYFFH 997
>gi|323456523|gb|EGB12390.1| hypothetical protein AURANDRAFT_20280 [Aureococcus anophagefferens]
Length = 902
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 343/846 (40%), Positives = 475/846 (56%), Gaps = 53/846 (6%)
Query: 207 AANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVA----YA 262
A +Y ++ D+ L ++ L W+EPL I E+ + + K Y
Sbjct: 88 ACADYEAMIEDLLSLGKGAELKPVQRLMAQWYEPLVTRITAER-KATLDGDKGGDLRIYG 146
Query: 263 PYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKK 322
P LP + +AV+TMH +GL + G G A+ +G+ ++ E R+ K + +
Sbjct: 147 PLLLLLPPEQLAVLTMHTTIGLCLKHGPLG-AKYSNLVTTLGETVQAEARVLKL--RNLR 203
Query: 323 KNETKNKEDEEGDESNTVT-TEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
+ K ED EG + T + L + T ++ + A R + +G D W R
Sbjct: 204 RERLKAAEDAEGKRAVPKTFLDARALARLPTHVVNSR---AKRALEEGDD--TDWPTITR 258
Query: 382 AKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNP 441
AK+GS ++ L A + + P H + ++K G+I
Sbjct: 259 AKLGSALVMALLDVAKDDAGS-----------PLLEHTI------VYSNARKIGIIRAKD 301
Query: 442 LVLKGLE--RTARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR 498
+L T R +P ++PMLV P +W YD+G L + MRTHG Q + R
Sbjct: 302 ELLSHARCPETIRRAAMPRFLPMLVEPRRWRAYDEGGFLRLRAVAMRTHGCALQMEAF-R 360
Query: 499 TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE------ 552
+ V LD +G W VN V ++ W+ GG+ DL + D+ LPE
Sbjct: 361 NARGIEGGVLAGLDAMGKVPWAVNGPVFDLVKAAWASGGKWPDLPSQEDLALPEPMDLAE 420
Query: 553 ---KPETEDEAQLRKWQWKVRN---VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
+ + +++ + + +R +K+ N E HS RCD LKLS+A + KDE FY+P+
Sbjct: 421 ALARADGDEDGGKKLYDAHLRRSARLKRRNAELHSLRCDTLLKLSIAEQFKDEAAFYFPY 480
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
NVDFRGRAYP+ P LNHLGSD+CR +L FAE + LG GL WL+IHLANL+ G+ K S
Sbjct: 481 NVDFRGRAYPVPPNLNHLGSDVCRAMLTFAEAKRLGDDGLFWLRIHLANLF--GLSKKSL 538
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
+ R AF H DI D+ ++P++G WWL+A++P+Q LA C L A P + +
Sbjct: 539 DDRAAFAVAHEADIRDAYERPMDGNMWWLEADEPWQALAACRELARAAELDDPRDYECAL 598
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
PVH DGSCNGLQHYAALGRD G VNL+ E P DVY G+ A V + R A D A+
Sbjct: 599 PVHADGSCNGLQHYAALGRDHEGGRQVNLLPGEAPRDVYEGVRALVAEKVARAATGDEAL 658
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
L A+++ + RK+VKQTVMTSVYGVT++GAR QI RL + G ++EAEL+ +C
Sbjct: 659 ETVRL-AQIVDGLITRKVVKQTVMTSVYGVTFVGARQQILGRLTDAG-DVDEAELYLCAC 716
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
Y A++TL L E+F +AR IM WL +CA++++ QPV W TPLGLPVVQPYR+ G+H V
Sbjct: 717 YVARLTLEVLEELFTSARHIMGWLAQCARLVSLHGQPVSWITPLGLPVVQPYRRDGQHAV 776
Query: 907 KTSLQILTLQRETEK--VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
KT Q + L ++K V V RQ++AFPPNFVHSLD SHM+MTAV GL F VHDS
Sbjct: 777 KTLAQTVLLVDNSDKLPVSVTRQKSAFPPNFVHSLDSSHMLMTAVEMDHRGLAFTAVHDS 836
Query: 965 YWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLG 1024
YWTHA DV MN LR F+ELYE P+ E LL+SF+ +P FPPLP RGD D+ +VL
Sbjct: 837 YWTHAADVATMNSTLRHCFLELYEAPLLEKLLESFELRYPDTDFPPLPPRGDLDIAKVLD 896
Query: 1025 SPYFFN 1030
+ YFF+
Sbjct: 897 ADYFFS 902
>gi|449016962|dbj|BAM80364.1| single subunit mitochondrial RNA polymerase [Cyanidioschyzon merolae
strain 10D]
Length = 1252
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 339/872 (38%), Positives = 490/872 (56%), Gaps = 67/872 (7%)
Query: 191 MLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQE 250
M +R+ +E A E A YR E+ +L + L L WF P+ AI +EQE
Sbjct: 416 MDYLREFNLEERAVEAAVARYRSFTQSALERGDINSLQPSQRLLLSWFFPVTMAIHQEQE 475
Query: 251 RCRMAKHKVAY-----APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
R R + +++Y P+ +L +++AVI +H+ +G ++ + ++ A +G
Sbjct: 476 RIR--RGELSYDGNVCGPHLLRLKPEVLAVIALHETLGRVLQ--DRAGVAFIRVASAVGR 531
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
+++ E+ + + E ++ + +D + + + + V + K
Sbjct: 532 SVQAEINLQRLRELHSEQRHRQLPQDRALRRTLALASTGSGGSRAVAAINLAAK------ 585
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTA--YIQSPADQLADAPPDIFPAFTHALRTV 423
+ + D W KVGS +I + + A +I +P + A AF H R +
Sbjct: 586 --RMELDTATWDDSVTIKVGSVLISFVMKHALIHIDTPTGKQA------VQAFRHGYRPL 637
Query: 424 SKETKGGSKKYGVIECNPLVLKGL---ERTARHMVIP-YMPMLVPPVKWTGYDKGAHFFL 479
+E +K GVIE + VL L E R ++P + PMLVPP WT Y+ G +
Sbjct: 638 QRE----PRKVGVIELHKSVLNLLLANESDLRETILPRFQPMLVPPRPWTAYNSGGYLRP 693
Query: 480 PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL 539
VMR G++ Q + +K K L VF L+ LG T WR+N VL V++++W GG +
Sbjct: 694 RGLVMRVRGSRLQLEALK---KGDLSEVFAGLNALGATPWRINRPVLDVVEKLWRAGGDI 750
Query: 540 ADLVDRNDVPLPEKPET-------------EDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
A LV R D+ LP E+ E+ R+ + + ++K NRERH+ RC++
Sbjct: 751 AGLVARADLQLPALAESVVDPAPDGKESAASTESLSREQRRAIWRIRKTNRERHALRCEL 810
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA-EGRTLGKSG 645
+L AR+ D FY PHN+DFRGRAYPM +L+H+ SD+CRG+L FA G +G+ G
Sbjct: 811 HYRLETAREFADVSRFYLPHNLDFRGRAYPMPSHLHHMSSDVCRGLLTFAGPGLRVGERG 870
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL--EGRRWWLKAEDPFQC 703
L W+K+HLANL G+DKL + R+AF E+ + + A P WW + EDPFQ
Sbjct: 871 LFWMKVHLANLC--GMDKLPFDERVAFAESVMPKVLAVAAAPTADSNLEWWAQQEDPFQL 928
Query: 704 LAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPAD 763
LA C L A P+ + S +P+ QDGSCNGLQHYAALGRD G VNL+ E+P D
Sbjct: 929 LAACFELAAAKGGLDPD-YHSTLPIQQDGSCNGLQHYAALGRDERGGYQVNLLPSERPQD 987
Query: 764 VYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARD 823
VYSG+A V + DA+ + A+LL ++ RK+VKQTVMTSVYGVT IGAR+
Sbjct: 988 VYSGVAELVRERVAHDAREGVPI------AQLLQGRISRKIVKQTVMTSVYGVTLIGARE 1041
Query: 824 QIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ- 882
QI+ RL+E E + + AS Y AK TL +LG++F+ A M WL ECA +A+ +
Sbjct: 1042 QIQNRLREL-PDFPEEKTWEASFYLAKQTLGSLGDIFRGATDTMEWLAECALRVATSKER 1100
Query: 883 --PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKR--QRTAFPPNFVHS 938
VRW TPLGLPV+QPYR+ V T +Q + L+ + + + V R QR+AFPPN++HS
Sbjct: 1101 TNAVRWITPLGLPVIQPYRRREARLVNTVVQHVLLEAQNDHLPVSRARQRSAFPPNYIHS 1160
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LD +HM+MTA+ACR+AGL FA VHDS+WTHA VDEMNR+LRE FV L+ + + L +
Sbjct: 1161 LDSTHMLMTALACRRAGLQFAAVHDSFWTHAATVDEMNRLLRECFVRLHARDLLQELREQ 1220
Query: 999 FQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FQ FP + PP+P +G DL +VL SPYFF+
Sbjct: 1221 FQLRFPDVELPPVPPKGTLDLNQVLLSPYFFD 1252
>gi|328869087|gb|EGG17465.1| DNA-dependent RNA polymerase [Dictyostelium fasciculatum]
Length = 1078
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/575 (48%), Positives = 379/575 (65%), Gaps = 16/575 (2%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+PM+V P W + G + P+++MRT+G+K Q ++ L ++E L+ LG
Sbjct: 517 LPMVVTPEPWDSPNNGCYLHYPTFIMRTNGSKLQTSSIISA---DLSKIYEGLNILGEVP 573
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWK-VRNVKKENR 577
W +N VL ++ W GG + DL R D LP E + A+ RK K V+ VK+ N
Sbjct: 574 WNINRPVLDIILAAWESGGGIGDLPSRFDYELPLAAEYSESAEQRKKHAKLVKKVKQLNH 633
Query: 578 ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE 637
+ HS RCD+ KL V ++++ E FY+PHNVDFRGR+YP+ P+LNHLGSD CR +L FAE
Sbjct: 634 DLHSLRCDLSYKLDVGKQLR-EHDFYFPHNVDFRGRSYPIPPHLNHLGSDFCRAMLTFAE 692
Query: 638 GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
+ LG GL WLK+HLANL GVDK+S + R+AF ++H+ D++DSAD PL G RWWL A
Sbjct: 693 KKPLGARGLMWLKVHLANL--SGVDKVSFDDRIAFVDSHMADVYDSADNPLNGARWWLAA 750
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA 757
+ P+Q LA CI L A+RS P F+S +P+HQDGSCNGLQHYAALG D GA VNL+
Sbjct: 751 DKPWQALATCIELANAVRSGDPANFMSSLPLHQDGSCNGLQHYAALGGDEFGAFKVNLLP 810
Query: 758 REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVT 817
KP DVYSG+A V ++ DA V AK LL +V RK++KQTVMTSVYGVT
Sbjct: 811 SPKPQDVYSGVAQLVSATVEHDAANGHEV------AKALLGKVQRKIIKQTVMTSVYGVT 864
Query: 818 YIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKII 877
YIGAR QI+ L+E+ M++ +F AS Y AK T +L +MF AR IM+WL +CA I
Sbjct: 865 YIGARAQIQNALEEK-YQMDDDFVFQASSYLAKETFKSLDKMFLGARSIMAWLSQCASAI 923
Query: 878 ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNF 935
A + V W TPLGLPVVQPYRK G+ ++KT L + E + V ++QR+AFPPN+
Sbjct: 924 AKSGECVAWYTPLGLPVVQPYRKGGKFSIKTIANEFVLVDDEEHLPVCSRQQRSAFPPNY 983
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+HSLD +HM +TA+ +A +TFA VHDS+WTHA D++N I+RE+FVEL++ P+ +L
Sbjct: 984 IHSLDSTHMFLTAIEASRANITFASVHDSFWTHAATTDDLNSIIREQFVELHQRPLLHDL 1043
Query: 996 LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
F K +P + PP+PE+G D+ +V SPYFF+
Sbjct: 1044 HTWFTKRYPTVNIPPVPEKGHLDIEKVKESPYFFH 1078
>gi|149940228|emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 383
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/406 (67%), Positives = 326/406 (80%), Gaps = 24/406 (5%)
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YD G HFFLPSY+MRTHG++QQ+D V+ P Q++ ++EALDTLG+TKWRVN R+L+V++
Sbjct: 1 YDCGGHFFLPSYLMRTHGSRQQQDAVEDAPPSQMQKIYEALDTLGSTKWRVNKRLLNVVE 60
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
IW+ GG +A LV+R DV +P+ +ED +++++W+W VR KK N+E HSQRCDIELKL
Sbjct: 61 SIWAAGGDIAGLVNRQDVSIPDL-NSEDSSEIKEWRWSVRKAKKMNQELHSQRCDIELKL 119
Query: 591 SV-ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
SV AR+MKDEEGFYYPHN+DFRGRAYPMHP+LNHL SDLCRGILEFAEGR LGKSGL WL
Sbjct: 120 SVVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWL 179
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
+IHLANLY GV+KLS++GRLAF E+H+ +I DSAD PL G RWWL AEDPFQCLA CIN
Sbjct: 180 RIHLANLYGSGVEKLSYDGRLAFVESHISEIIDSADNPLGGNRWWLTAEDPFQCLAACIN 239
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L E L+SSSP T ISH+PVHQDGSCNGLQHYAALGRDT+ AAAVNLVA EKPADVYS IA
Sbjct: 240 LAETLKSSSPHTVISHLPVHQDGSCNGLQHYAALGRDTVEAAAVNLVAGEKPADVYSEIA 299
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
R II QV+RKLVKQTVMTSVYGVT++GAR+QIKRRL
Sbjct: 300 TRYADII----------------------QVNRKLVKQTVMTSVYGVTFVGAREQIKRRL 337
Query: 830 KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
+E+G ++ LF ASCYAA+VTL ALGE+F+AARG M WLG+CAK
Sbjct: 338 QEKGHISDDQLLFSASCYAARVTLEALGEIFEAARGTMCWLGDCAK 383
>gi|330812904|ref|XP_003291356.1| hypothetical protein DICPUDRAFT_95344 [Dictyostelium purpureum]
gi|325078456|gb|EGC32106.1| hypothetical protein DICPUDRAFT_95344 [Dictyostelium purpureum]
Length = 862
Score = 573 bits (1477), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/582 (47%), Positives = 387/582 (66%), Gaps = 24/582 (4%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKW 519
PM++ P+ W +G + ++R +G K Q + K L ++ AL+ LGNT W
Sbjct: 294 PMVIKPLPWISPFEGPYLHYKVPILRANGNKSQ---ITSLLKSDLSQIYRALNVLGNTPW 350
Query: 520 RVNNRVLSVLDRIWSCGGRLADL---VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKEN 576
+N + +++ W GG +AD+ ++ PLPE T ++ + + + + + K N
Sbjct: 351 VINKKAYDIINEAWEAGGDIADMPRKINYEYPPLPEDVLTSLSSRKKHFLLE-KKISKLN 409
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
++ HS R D + KL VA K D Y+PHN+DFRGR+YP+ P+LNHLGSDLCR +L+F
Sbjct: 410 KDLHSLRSDCKYKLEVAEKFLDH-TIYFPHNLDFRGRSYPIPPHLNHLGSDLCRSLLKFE 468
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+ + LGK GL WLKI ++NLY GVDK+SH R+ FT ++++I DSAD PL+G+RWWL
Sbjct: 469 KSKPLGKRGLDWLKIQISNLY--GVDKVSHADRIKFTTENIENIMDSADNPLKGKRWWLN 526
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
A+ P+Q LA CI LTEALRS +PE F S++P+HQDG+CNGLQHYAALG D LGA VNL+
Sbjct: 527 ADYPWQALAACIELTEALRSPNPEEFCSNLPIHQDGTCNGLQHYAALGGDELGAIKVNLI 586
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
+KP DVY+G+A V I++++A+ A ++DRKLVKQTVMTSVYGV
Sbjct: 587 PSDKPQDVYTGVAGLVAEIVEKEAEEGNKF------AIFFRGRIDRKLVKQTVMTSVYGV 640
Query: 817 TYIGARDQI----KRRLKERGAPME--EAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
TYIGAR+QI K +L E P+E + +F AS Y K T AL MF AR IM+WL
Sbjct: 641 TYIGAREQIHSSLKEKLDEETNPLEIDDEFMFSASSYITKHTFRALNNMFFGARSIMAWL 700
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK--RQR 928
ECA +IA PV W TPLGLPVVQPYRK +++VK L +T+K+ V +Q+
Sbjct: 701 SECAVLIAKSGHPVNWITPLGLPVVQPYRKTSKNSVKILEGEFLLINDTDKLQVNTLKQK 760
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
+AFPPNF+HSLD +HM +TA+AC AG+T++ VHDS+WTHACDVD+MN ++R++F+EL++
Sbjct: 761 SAFPPNFIHSLDSTHMFLTALACDDAGITYSSVHDSFWTHACDVDKMNVLIRDQFIELHQ 820
Query: 989 MPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
P+ + LL+ F+ P + FP +PE+G+ DL +V S YFF+
Sbjct: 821 QPLLQRLLEWFKTKHPTIDFPKIPEKGNLDLTQVKNSKYFFH 862
>gi|325187365|emb|CCA21903.1| DNAdependent RNA polymerase putative [Albugo laibachii Nc14]
Length = 1012
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 339/883 (38%), Positives = 488/883 (55%), Gaps = 82/883 (9%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
L RQ+++E ++ A ++ + D+ + A + ++L +GW EP I+ EQ
Sbjct: 168 LFARQIRLECAIYDMAVEKHLAVRQDVGKLGRASQVNAAQNLVVGWMEPAIALISNEQRD 227
Query: 252 CRMAKHKV---AYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIE 308
K + Y P L A ++A ++++ ++ + + AR ++ A +G+ ++
Sbjct: 228 VLAGKRSLDSSIYGPALLLLDAKVLAALSINTMLNNCLVDSKG--ARFIKLALALGNIVQ 285
Query: 309 QEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK 368
+ + +N+ K K+ E+ S + + RK + ++
Sbjct: 286 EHI----------CENKRKRKDSEKYFLSLVRGIQNDVFRKHMENVYTTAGY-------- 327
Query: 369 GQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-------------DAPPDIFPA 415
W + KVG+ +I+ + ++ Y+ Q A + PP A
Sbjct: 328 -------WDKRLNLKVGAALIDFIQRSCYVPDRLLQAAGRKVHGTLEEHDPEKPPKKEQA 380
Query: 416 FTHALRTVSKETKGGSKKYG-----VIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTG 470
F H G K + ++ +P + L TAR Y+PMLVPP +W
Sbjct: 381 FVHCYYYERNRRSGMFKMHDTIFNLILNTDP-GMNVLPWTAR-----YLPMLVPPKRWEN 434
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
+ G + L + +MR Q D VKR P L+ VF L+ L W +N +L V+
Sbjct: 435 PNNGGYLKLHTKIMRQRDIVWQMDCVKRAP---LQEVFTTLNLLAEVPWVINQEILDVIL 491
Query: 531 RIWSCGGRLADLVDRNDVPLPE-KPETEDEAQLRKWQWKVR-NVKKENRERHSQRCDIEL 588
RIW GG DL R D P P+ KPE E++ + R+ K V++ NRE HS RCD
Sbjct: 492 RIWQEGGGFGDLPSREDFPFPDNKPEDEEDPEKRQALAKAHAKVRQRNRELHSLRCDTLY 551
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
KL VA++ ++E+ Y+P+N+DFRGR YP+ P LNHLGSD+ R +L F + + LGK GL W
Sbjct: 552 KLQVAQEFRNEKEIYFPYNLDFRGRVYPIPPNLNHLGSDMSRSLLLFRDRKPLGKDGLRW 611
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKP--LEGRRWWLKAEDPFQCLAV 706
LKIHLAN++ GVDK S + R+AFTE++L +F SA P + WW AE PF L V
Sbjct: 612 LKIHLANVF--GVDKCSFDERVAFTESNLTKVFASARDPHGVGDAVWWKTAEYPFLALGV 669
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C L AL S PET++S+IPVHQDGSCNGLQHYAALGRD G VNLV +P DVY
Sbjct: 670 CFELKRALNSPDPETYLSNIPVHQDGSCNGLQHYAALGRDLKGGEQVNLVPASRPGDVYI 729
Query: 767 GIAARVLVIIQRDA----------QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
+A +V+ ++ RDA +R ++ A LL + R++VKQTVMTSVYGV
Sbjct: 730 KVAEQVMDLVNRDANLEIPEDATPERKLSLAHRKRCATFLLGTITRRVVKQTVMTSVYGV 789
Query: 817 TYIGARDQIKRRLKE----RGAPMEE---AELFGASCYAAKVTLTALGEMFQAARGIMSW 869
T+IGAR QI+ RL+E G +E +++ +SCYAA++T+ +L +F +AR IM W
Sbjct: 790 TFIGARKQIQARLQEANLSNGNLSDEEMDQQVYDSSCYAAEITMESLRNLFTSARNIMEW 849
Query: 870 LGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-ILTLQRETEKVMVKRQR 928
LG+CA +A E Q + W TPLGLPVVQPYR+ G V+T +Q +L + + V RQ+
Sbjct: 850 LGDCASKVAEEGQLMSWITPLGLPVVQPYRRFGSQQVRTKVQHVLMVSTDHLPVSPGRQK 909
Query: 929 TAFPPNFVHSLDGSHMMMTAVAC-RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+AFPPNFVHSLD +HM+MTA C + + FA VHDSYWTHAC V+ MN LRE+FV LY
Sbjct: 910 SAFPPNFVHSLDSTHMLMTAKKCLEEDAIAFAAVHDSYWTHACSVETMNMRLREEFVRLY 969
Query: 988 EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
E P+ E+LL+ + FP F +P+ G+ LR VL S YFFN
Sbjct: 970 EHPLLEDLLEQLELRFPSTKFKKIPKLGELQLRNVLQSEYFFN 1012
>gi|194694606|gb|ACF81387.1| unknown [Zea mays]
Length = 323
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 267/323 (82%), Positives = 297/323 (91%)
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
+NLTEALRSSSPET ISHIPVHQDGSCNGLQHYAALG+D LGA AVNLVA EKPADVY+G
Sbjct: 1 MNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTG 60
Query: 768 IAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR 827
IA RV+ I++ DAQ+DP+V PDA RA+L++ QVDRKLVKQTVMTSVYGVTYIGAR+QI+R
Sbjct: 61 IANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRR 120
Query: 828 RLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWT 887
RLKERG ++ELFGASCYAAKVTLTALGEMFQAAR IM+WLG+CAK+IA EN+PVRWT
Sbjct: 121 RLKERGVIPNDSELFGASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWT 180
Query: 888 TPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
TPLGLPVVQPYRKLGRH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMT
Sbjct: 181 TPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 240
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
AVAC++ GL FAGVHDSYWTHA DVD MN+ILREKFVELY+ PI ENLL+SF+KSFPKL
Sbjct: 241 AVACKRQGLNFAGVHDSYWTHASDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLK 300
Query: 1008 FPPLPERGDFDLREVLGSPYFFN 1030
FPPLPERGDFD++EVL S YFFN
Sbjct: 301 FPPLPERGDFDMKEVLESTYFFN 323
>gi|301106056|ref|XP_002902111.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans T30-4]
gi|262098731|gb|EEY56783.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans T30-4]
Length = 1070
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 350/942 (37%), Positives = 494/942 (52%), Gaps = 142/942 (15%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
RQ+++E +E A ++Y + + + + K L W + I EQ++ +
Sbjct: 165 RQLRLECSVYEMAMDKYSASHDKVRQLGRSTSTNAAKDLITKWMPQAQKYIESEQKKIKS 224
Query: 255 AKHKV---AYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEV 311
H Y P L D++A I M+ ++ + + E + ++ A +G A+++E+
Sbjct: 225 GTHSTDSNIYGPALMLLRHDILAAIGMNIMLNMCLM--ESKGPKFIKLALAMGKAVQEEI 282
Query: 312 RIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQD 371
+KK+ +K +D++ K +V+ IK + L R+ + D
Sbjct: 283 -------ISKKETISKRYQDDD------------KFYLQVSKNIKLESLKM--RMKEYVD 321
Query: 372 DFKPWGQDARAKVGSRVIELLTQTAYI-------QSPADQLADAPPDIFPAFTHALRTVS 424
W + + KVG+ V++ + +T Y+ +P A P PAF H
Sbjct: 322 SVGGWDKRLQLKVGAAVVDCIQRTCYVPNEYGEVSTPELCAAKGLPPPEPAFIH------ 375
Query: 425 KETKGGSKKYGVIECNP-LVLKGLERTARHMVIP----YMPMLVPPVKWTGYDKGAHFFL 479
+++ GVI+ + + L V+P Y+PMLVPP WT G + L
Sbjct: 376 NYVFDRNRRAGVIQIHQRMADTVLATNPDANVLPWTARYLPMLVPPRPWTSVINGGYLKL 435
Query: 480 PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL 539
+ +MR + Q D V+R +++ + +AL+ + W +N VL V+ +IW GG
Sbjct: 436 RTKIMRQRDSAWQMDCVQR---GEMDGILKALNLMAEVPWVINKEVLDVVLQIWEDGGNF 492
Query: 540 ADLVDRNDVPLPE--KPETEDEAQL----------------------------------- 562
DL R DVPLP+ PE D+ L
Sbjct: 493 GDLPTRTDVPLPDPDSPEFADDPALYHKNVRKNQAHMMTISTSCGFKLIATVSGHCLEVV 552
Query: 563 -----------RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFR 611
R +W + +++ NRE HS RCD KL VA + KDE YYP+N+DFR
Sbjct: 553 GWIFLSLEPSERLLRWSL--IEQLNREFHSLRCDTLYKLQVAEEFKDEPELYYPYNMDFR 610
Query: 612 GRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLA 671
GR YP+ P LNHLGSDL R +L F + + LG+ GL W+KIHLAN++ GVDK S + R+
Sbjct: 611 GRVYPIPPNLNHLGSDLSRSLLIFRDRKPLGERGLRWMKIHLANVF--GVDKCSFDERVE 668
Query: 672 FTENHLDDIFDSADKPL-EGR-RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
F + HLD + SA PL EG WW A+ PF L VC L A+ S P ++S+IP+H
Sbjct: 669 FADAHLDKVVASASDPLGEGDCAWWKGADYPFLALGVCFELKRAIESPDPTQYMSNIPIH 728
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP----- 784
QDGSCNGLQHYAALGRD G A VNLV ++P+DVY G+A +V+ ++RDA +
Sbjct: 729 QDGSCNGLQHYAALGRDHSGGAQVNLVPADRPSDVYMGVATQVMAKVERDAALEVPTVEE 788
Query: 785 -----AVFPD-------ALRAKL--LLSQ-------------VDRKLVKQTVMTSVYGVT 817
A PD + R K LL Q + RK+VKQTVMTSVYGVT
Sbjct: 789 VRAMLAAVPDDESTESLSRRTKFRTLLDQAHRKKYAQFLDGIITRKVVKQTVMTSVYGVT 848
Query: 818 YIGARDQIKRRLKE----RGAPME---EAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
YIGAR QI RL E +G M+ E ++ ASCY A++T+ ++G++F +ARGIM WL
Sbjct: 849 YIGARKQISARLHETFLTKGHIMDDKLEDNIYHASCYCAELTMGSMGDLFTSARGIMGWL 908
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-ILTLQRETEKVMVKRQRT 929
CA + QP+ W TPLGLPVVQPYR V+T +Q +L + E V + RQ++
Sbjct: 909 ARCAGKVGESGQPMSWITPLGLPVVQPYRSKSTKQVRTKVQHVLMVDNEGRPVSIGRQKS 968
Query: 930 AFPPNFVHSLDGSHMMMTAVAC-RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
AFPPNFVHSLD +HMM+TA C ++FA VHDSYWTHAC VD MNR LRE+FV LYE
Sbjct: 969 AFPPNFVHSLDSTHMMLTARRCLEDEQISFAAVHDSYWTHACSVDIMNRRLREEFVNLYE 1028
Query: 989 MPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
P+ E+LL FP + F +P+ GD DL+ VL SPYFFN
Sbjct: 1029 QPLLEDLLTELHLRFPDMEFDDVPQLGDLDLQSVLDSPYFFN 1070
>gi|384499375|gb|EIE89866.1| hypothetical protein RO3G_14577 [Rhizopus delemar RA 99-880]
Length = 1239
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 336/899 (37%), Positives = 480/899 (53%), Gaps = 105/899 (11%)
Query: 196 QVKIETEAWEKAANEY---RELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERC 252
Q+ +E + +E A +E ++ + A +L +K + W + L I +E +RC
Sbjct: 270 QLSLERQGYEMALQRLLHTKEQSIERGDTLNAMHLTPLKRIMWTWHQNLTLLIDEEIKRC 329
Query: 253 RMAK----HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIE 308
+A + AY P+ LP D ++++T+ +L+ L + G + +A +G A+E
Sbjct: 330 EVAAPRDHERRAYGPFLKVLPKDTLSIVTILELLRLHNSSGIGDGMKTARAILDVGKAVE 389
Query: 309 QEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK 368
E H ++ K +N + N +++ + L A ++IV
Sbjct: 390 ME---HNAVQMKKHAKSQQNIQ-------NVLSSGR---------LFNMAVNKAHKKIVN 430
Query: 369 GQDDFKPWG----QDARAKVGSRVIELLTQTAYIQSPA--DQLADAPPDIFPAFTHALRT 422
++ W RAKVGS + LL + A I P+ + + PAF H +
Sbjct: 431 NDENSAEWNPVWPTTTRAKVGSVLTSLLLEAAKIPVPSRDPETGKKIVENIPAFFHTYQY 490
Query: 423 VSKETKGGSKKYGVIECNPLVLKGLERTA-RHMVIP-YMPMLVPPVKWTGYDKGAHFFLP 480
V K+ G+I+ + + L R R + P +PMLVPP W Y+ G +
Sbjct: 491 VL------GKRVGIIKFADQLTEMLSREPIRDTLHPRLLPMLVPPRPWLSYNSGGYLQTK 544
Query: 481 SYVMRTHGAKQQRDTVKRTPKKQL-EPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL 539
S MR + +Q + + ++ L + V LD LG+T+W+VN V ++ W+ G +
Sbjct: 545 SVCMRIKDSAEQLIYLHKASERDLLQDVLAGLDVLGSTRWKVNKNVFKIILEAWNKGEAI 604
Query: 540 ADL--VDRNDVPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK 595
AD+ PLP KPE K+ W +V+ ++ + HS RCD+ K+ AR
Sbjct: 605 ADIPPAVNGPTPLPPKPENYHTDPKAKFNWVNEVKQIQTTEKNNHSLRCDVNYKVETARA 664
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
+ Y+PHN+DFRGRAYPM P LNHLG+DLCRG+L F E + LG+ G WLKIHLAN
Sbjct: 665 FLNLP-MYFPHNMDFRGRAYPMPPTLNHLGNDLCRGLLHFEEAKPLGEKGWRWLKIHLAN 723
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
LY G DK S R FT +++D+I D+ D PL G++WWLKA+ P+QCLA C + EA+R
Sbjct: 724 LY--GYDKHSFTEREQFTLDNIDNIIDAVDNPLTGKQWWLKADSPWQCLAACFEVAEAVR 781
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
S PE F S +PVHQDG+CNGLQHYAALG D GA AVNL A ++PADVY+G+A V
Sbjct: 782 SGKPEEFKSRLPVHQDGTCNGLQHYAALGGDLAGARAVNLAAGDRPADVYTGVADMVNKY 841
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
I + A+ AK+L V RK+VKQTVMT+VYGVT++GAR QI+ RLKE
Sbjct: 842 IDKAAEEGNEY------AKILQGNVSRKVVKQTVMTNVYGVTFVGARAQIENRLKE-NPD 894
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA----------------- 878
+ +++ S Y AK ++LGEMF AR I WL + A+ IA
Sbjct: 895 IPRDKVYALSSYLAKAVFSSLGEMFNGARQIQDWLTDSARRIARSVPLETLEESGVVKHN 954
Query: 879 -------------------------------SENQPVRWTTPLGLPVVQPYRKLGRHTVK 907
S+ V WTTPLGLP+VQPYR+ G+ V
Sbjct: 955 SGSIEDAKKSKAKAKESKKKKQVFSARNPSSSQMTSVIWTTPLGLPIVQPYRRSGKRQVA 1014
Query: 908 TSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
T LQ + ++ + V +Q TAFPPNF+HSLD +HM+M+AVAC K G+TFA VHDSY
Sbjct: 1015 TLLQTIYIEDPDASRPVNALKQSTAFPPNFIHSLDATHMLMSAVACHKRGMTFASVHDSY 1074
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLG 1024
WTHACDVD MN ++RE+F+EL+ PI ENLL FQ+ + + P G +E++G
Sbjct: 1075 WTHACDVDSMNEVIREQFIELHSQPIMENLLQEFQERYKEFRVPVSKPIGSDKGKEIVG 1133
>gi|219127811|ref|XP_002184121.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404352|gb|EEC44299.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1188
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 340/946 (35%), Positives = 521/946 (55%), Gaps = 126/946 (13%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA----- 246
L+ Q+ +E EA +++ Y+ ++ +K +L ++ L W++PL+ I
Sbjct: 260 LEELQLWLECEAQQESITRYQHVIDSARTRKDYASLSLVQRHVLQWYQPLKHEIESLQKA 319
Query: 247 ---KEQERCRMAKHKVA---YAPYFDQLPADMMAVITMHK-LMGLLMTGGEHGRARVVQA 299
KEQ+ + K A Y P+ LP + +AVI H+ +M L G GR
Sbjct: 320 YIFKEQDPEGVVLTKRAANVYGPFICSLPPEKLAVICAHEAIMSGLSNPGVDGRDGTAFT 379
Query: 300 ACI--IGDAIEQEVRIHKFLEKTKKKNETKN------------KEDEEGD---------- 335
A IGDA+EQEV I + L + K+++ ++ +E+ EGD
Sbjct: 380 AVARRIGDAVEQEVVIQRMLHRRFKESQARHSTQDPNRILPKPEEEVEGDVELSTDKIDE 439
Query: 336 -----------ESNTVTTEQEKLRKKVTDL-------------IKKQKLP--AVRRIVKG 369
+S+T T + K + L +KK+ + A+RR
Sbjct: 440 DMNDGNATTRSKSSTGTEDVHKWAYAASHLKNYLDEISYRKPSVKKRLVIEYAIRRARTI 499
Query: 370 QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKG 429
++ + W + + ++G+ + ++L A ++ Q AFT+ +SK+
Sbjct: 500 LENDEAWTESQKIQLGAVLFQVLLNKANVRIDGKQEK--------AFTYEKFWISKQ--- 548
Query: 430 GSKKYGVIECNPLVLKGLE----RTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
K ++ N + K L ++ PM+VPP W+ D+G + L + ++R
Sbjct: 549 --KVQSIVSMNDRLHKMLVSDKLQSFGTTTTRQKPMIVPPKPWSRPDEGGYKMLRTELLR 606
Query: 486 THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
HG Q++ ++ L VF+ L+ LG WR+N RVL+V R W L D+ +
Sbjct: 607 YHGCNMQKEVLQNV---DLSIVFDGLNALGRVPWRINQRVLTVAQRCWDNNIPLGDIPSK 663
Query: 546 NDVPLPEKP----------ETE--------DEAQLRKWQW-KVRNVKKENRERHSQRCDI 586
+D PLPE+P E E +E +L + W K R VK+ N + S RC
Sbjct: 664 DDNPLPEEPLHPKRQEQFWEPETPGYESYVEEYRLYRESWNKFRRVKQRNMDLRSLRCSA 723
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
LKL A K K+ E ++P+N+DFRGRAYP+ P+L+++GSDLCRG+L+FAE + LG GL
Sbjct: 724 MLKLDQAEKFKEFEEIFFPYNMDFRGRAYPVPPHLSNVGSDLCRGVLKFAEAKPLGPRGL 783
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
+WLK+HLAN G DK+S + R+ F +++L+ + SA+ P G RWW+ EDPFQ LA
Sbjct: 784 YWLKVHLANF--AGKDKMSFDDRVKFVDDNLEQVRLSAEDPFAGERWWMSLEDPFQGLAT 841
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C+ + +A+ +PE+F+ +PVH DGSCNGLQHYAALGRD++G AVNL A ++P DVY
Sbjct: 842 CLEIIDAIDCGNPESFLCSLPVHMDGSCNGLQHYAALGRDSVGGKAVNLCAYDEPQDVYV 901
Query: 767 GIAARVLVIIQRDAQR----DPAVFPDALR-----------AKLLLSQVDRKLVKQTVMT 811
G+ V+ + +A+R D + R AKL+ +DR +VK+TVMT
Sbjct: 902 GVMHEVVRRVAAEAERQLDFDTSDLESLSRKQKKELSYNRAAKLVNGLIDRGVVKRTVMT 961
Query: 812 SVYGVTYIGARDQIKRR----LKERGAPMEEA--ELFGASCYAAKVTLTALGEMFQAARG 865
SVYGVTYIGAR QI+ + L+ +G ++E E+F A Y A +T+ +G++F AR
Sbjct: 962 SVYGVTYIGARQQIQEKIISKLEAQGHDVDEMSNEIFQACGYVASLTMEVMGDLFTGARE 1021
Query: 866 IMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK 925
M+WL CA++I P+ W +P+GLP +QPYR+ T+ T LQ +TL E++ + +
Sbjct: 1022 TMNWLTTCARMITQHGFPLAWVSPIGLPAIQPYRQKKAATIVTLLQTVTLINESDDLPIH 1081
Query: 926 RQR--TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
+QR +AFPPNF+HSLD SHM++TA+ + GLTF+ VHDS+WTHACD+DEMN LR+ F
Sbjct: 1082 KQRQVSAFPPNFIHSLDSSHMLLTALEMDRRGLTFSAVHDSFWTHACDIDEMNEALRDVF 1141
Query: 984 VELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
V+LY P+ E L +++ +P+L FP +P+RGD +L EV + YFF
Sbjct: 1142 VDLYSQPLLERLKQTWEMRYPELEFPDIPKRGDLNLAEVKQAKYFF 1187
>gi|145499932|ref|XP_001435950.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403087|emb|CAK68553.1| unnamed protein product [Paramecium tetraurelia]
Length = 1035
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 328/881 (37%), Positives = 496/881 (56%), Gaps = 66/881 (7%)
Query: 190 RMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ 249
R L RQ+ IE + E A + ++++ D+ + A +L + + WF L + +EQ
Sbjct: 179 RNLFERQLIIEQVSNELALDRFQQVFDDLQKMSKAQHLFAAQKYIVEWFPKLCALVQQEQ 238
Query: 250 ERCRM--AKHKVAYAPYFDQLPADMMAVITMHKLMGLLM----------TGGEHGRARVV 297
+C K + Y Y + ++ +A+I + +LM + T + RV
Sbjct: 239 IQCFSDPNKEQQGYHQYITAIQSEKLAIIALSELMKEFIEAAVLFHEEKTTLNCYQIRVT 298
Query: 298 QAACIIGDAIEQEVRIHKFLEKTKKKNETKNKED-----EEG----DESNTVTTEQEKLR 348
+ A IG+ I ++ E+ +K K+KED EEG D+S Q++L
Sbjct: 299 RLANRIGEQIMKQ----HLYEEEQKNLRRKSKEDIQKMIEEGTVPQDQSEEEIQNQKELF 354
Query: 349 KK-----VTDLIKKQKLPAVRRIVKGQDDFKPWGQ----DARAKVGSRVIELLTQTAYIQ 399
K L+K Q+ RI + +GQ D A++G ++ L + +
Sbjct: 355 YKQAVVKAGKLLKTQQEKLRERIRNNRVYLAKYGQAMPKDIAAQIGMVLVHFLVDSIKFR 414
Query: 400 SPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY- 458
+ + P + V ++ + + N L L L H Y
Sbjct: 415 NENNFWV-------PVLVQGYKKVKQDIE-----VAIFNVNQLFLHHLS-AGMHKDNSYF 461
Query: 459 ------MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALD 512
+PM+ PP KW G ++ P+ ++R Q + KR L+ +++ LD
Sbjct: 462 MHLDRALPMIYPPAKWMDTQIGGYYLKPTNLIRIQDQSLQEEAAKRA---NLQNLYDILD 518
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNV 572
+ WRVNN+VL++ ++W GG +A++ R E + + ++++ +
Sbjct: 519 NISKVAWRVNNKVLNIAMQVWEQGGGIAEVPKRQHDKTYVFEHQIKECKSYEEKYQLLKM 578
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ R+ +S +CD LKL VA + Y+PHN+DFRGR YP+ P+LNH+G D+ RG+
Sbjct: 579 IQSQRDLYSLQCDFTLKLGVALAFNGCQKIYFPHNMDFRGRLYPIPPHLNHMGPDIARGL 638
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
LEF+EG+ LGKSGL WLKIHLAN G DKLS E R A+ + ++D I A+ P++ +
Sbjct: 639 LEFSEGKKLGKSGLRWLKIHLAN--KMGKDKLSMEDREAYVDQNVDSIIKCAEDPIKYQD 696
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
W + ED +Q LA + A++S +PE + SH+ VHQDGSCNGLQHYAALGRD GA
Sbjct: 697 W-AQLEDAWQSLAAMFDYVAAIKSPNPEEYESHLHVHQDGSCNGLQHYAALGRDVEGATQ 755
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
VNL KP DVY+ +A V ++ DA+ ++ D + A L +Q+ RK+VKQTVMTS
Sbjct: 756 VNLANTSKPGDVYTHVAGMVERRVEFDAK--DSLSKDHIIALKLQNQIKRKIVKQTVMTS 813
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAEL-FGASCYAAKVTLTALGEMFQAARGIMSWLG 871
VYGVT+IGAR+QI R+LK++G E+ L + AS Y A++TL A+ ++F+ A I WL
Sbjct: 814 VYGVTFIGAREQIHRQLKDKGIIGEDEHLQYQASIYLARITLDAIKDLFEGAHKIKQWLI 873
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHT-VKTSLQILTLQRETEKVMVKR--QR 928
+CA II++ENQPV W TPLGLPV+QPYR L ++ VKT + ++++ + + + + QR
Sbjct: 874 KCATIISNENQPVSWITPLGLPVIQPYRSLNKYDEVKTLISNVSIESDAAYLPINKVKQR 933
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
+AFPPNF+HSLD +H+M +++ C K G+TFA VHDSYWTHAC+VD++N +LRE+FV L+
Sbjct: 934 SAFPPNFIHSLDSTHLMYSSIECLKQGITFAAVHDSYWTHACNVDKLNELLREQFVRLHS 993
Query: 989 MPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
P+ E+L DSFQ+ FP L FPP+PERG FDL +V S YFF
Sbjct: 994 QPLLEDLRDSFQRRFPHLEFPPIPERGQFDLEKVKQSVYFF 1034
>gi|307103643|gb|EFN51901.1| hypothetical protein CHLNCDRAFT_27382 [Chlorella variabilis]
Length = 599
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/596 (47%), Positives = 391/596 (65%), Gaps = 28/596 (4%)
Query: 458 YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQ-------LEPVFEA 510
Y+PML+PPV W + G H L + VMR G++ Q++ + ++ L V++A
Sbjct: 9 YLPMLIPPVPWLRNNLGGHLTLRNTVMRIRGSRLQQEMLDAADQEWGEGRGPGLSRVYDA 68
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE--KP--------ETEDEA 560
L++LG+T W +N V V++ +W+ GG + D+ + ++PLP KP + +
Sbjct: 69 LNSLGSTAWAINQDVFRVVETVWAWGGGVCDIPPKVNLPLPRDLKPGFRQHRHAPGQLQF 128
Query: 561 QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPY 620
LR + + ++K+NRE HS RCD+E KL++AR+ E FY+PHNVDFRGRAYPMHP+
Sbjct: 129 YLRTRRADISRMQKKNRELHSLRCDMEYKLAIAREFVKEPRFYFPHNVDFRGRAYPMHPH 188
Query: 621 LNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDI 680
LNHLG+DL RG+L+FAEGR LG+ GL WL + ANL+ GVDKL GR+ + E+HL I
Sbjct: 189 LNHLGADLSRGLLQFAEGRPLGEHGLFWLYVQAANLWGQGVDKLPLWGRVKWVEDHLAQI 248
Query: 681 FDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHY 740
+ +W +AE+PFQ L+ C + +A S P F+SH+PVHQDGSCNGLQHY
Sbjct: 249 LMTTRGSHGQVAYWWQAENPFQFLSTCFEIHKANASGDPARFVSHVPVHQDGSCNGLQHY 308
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQR---DAQRDPAVFPDALRAKLLL 797
AALGRD G AVNL ++P +G AR R A P+ PD L L
Sbjct: 309 AALGRDFSGGHAVNLCPTDRPQ---AGGGARKPRTPDRACIHASNQPSNQPDLLMCHTLC 365
Query: 798 SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE-LFGASCYAAKVTLTAL 856
+ +DRKLVKQTVMTSVYGVT++GAR Q+ RLKERG E+ + ++ SCY AKVTL L
Sbjct: 366 AGLDRKLVKQTVMTSVYGVTFVGARAQVGNRLKERG--FEDNQFMYKVSCYTAKVTLECL 423
Query: 857 GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ 916
EMFQ+A+ M WL ECA++IA E V W TPLGLPVVQPYR+ R V+T LQ L L
Sbjct: 424 HEMFQSAKHTMHWLSECARLIAKEGHSVMWHTPLGLPVVQPYRRKDRQHVRTLLQRLVLV 483
Query: 917 RETEK--VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
+ +M +RQRTAFPPN++HS+D SHMM+TA+AC++ G+ FAGVHDS+WTHA V+
Sbjct: 484 ENNDDLPIMKQRQRTAFPPNYIHSIDSSHMMLTAIACQQEGIDFAGVHDSFWTHAGTVER 543
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
MN +LREKF+EL++ P+ E LL+ F++ +P + FPP+P +G DL ++ + YFF+
Sbjct: 544 MNELLREKFIELHQQPLLEQLLEEFKRLYPTVDFPPIPPKGTLDLDQLRQAAYFFS 599
>gi|89148154|gb|ABD62820.1| mitochondrial single-subunit RNA polymerase [Stygamoeba sp. ruffled]
Length = 661
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 291/626 (46%), Positives = 395/626 (63%), Gaps = 29/626 (4%)
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKG-----LERTARHMVIPYMPMLVPPVKWT 469
AF H +K +K G I C P VL+ L + A H + +PM+VPP WT
Sbjct: 55 AFKHTYTYTTK------RKVGAITCAPSVLQTIRDGHLAQEANHARM--LPMVVPPKPWT 106
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
D G + + S VMR ++ Q D + +T L V+ +LD L W++N RVL V
Sbjct: 107 APDVGGYLVVKSNVMRVRDSRLQWDMLSKT-GTDLSNVYRSLDELSAVPWKINKRVLRVA 165
Query: 530 DRIWSCGGRLADLVDRNDVPLPEKPETE---DEAQLRKWQWKVRNVKKENRERHSQRCDI 586
+W GG + DL R D+PLPE P+ D A+ + +R ++ N + HS RCD
Sbjct: 166 QELWQRGGGIGDLPSRTDLPLPEAPDNYKDMDPAERSAYYRHLRRQQRANADLHSLRCDT 225
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
LKL VA + ++ + FY+PHN+DFRGR YP+ P+LNHLGSDLCRG+L F+EGR LG +GL
Sbjct: 226 TLKLGVAEQFQNLDRFYFPHNMDFRGRTYPIPPHLNHLGSDLCRGLLCFSEGRELGPNGL 285
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
WLK+ LANL+ G +K S R F + ++ + +A P WW A+DP+Q L+
Sbjct: 286 GWLKVQLANLF--GNNKCSFADRQRFADENMARVLATAADP-ATETWWHAADDPWQALST 342
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C LT+AL S P +S++P+H DGSCNGLQHYAALG D GA VNL+ +P DVYS
Sbjct: 343 CYELTDALASPDPARHVSYLPIHMDGSCNGLQHYAALGGDEEGARKVNLLPAPQPDDVYS 402
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
G+A V +++ DAQ+ ++ A LL ++ R++VKQTVMTSVYGVTY+GAR QI+
Sbjct: 403 GVATIVSRLVEEDAQKGHSI------ALLLRDRISRRIVKQTVMTSVYGVTYVGARAQIQ 456
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRW 886
L +++ + AS Y A TL A+ EMF AR IM+WL CA +IA +PV W
Sbjct: 457 NALSSTDL-LDDDAAWQASRYLAAHTLEAVREMFVGAREIMAWLATCAGLIAQSGEPVMW 515
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEK--VMVKRQRTAFPPNFVHSLDGSHM 944
TTPLGLPVVQPYR+ G+ V+T +Q +TLQ ++ + V RQRTA PPNF+HSLD +HM
Sbjct: 516 TTPLGLPVVQPYRRPGKQFVQTVVQKVTLQESSDDLPIHVTRQRTAHPPNFIHSLDSTHM 575
Query: 945 MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP 1004
M+T + G TFA VHDSYWTHA VD MN+ILR+KFV+++ P+ ENLL SF++++P
Sbjct: 576 MLTCLEMADQGYTFASVHDSYWTHARTVDPMNQILRQKFVDMHSEPLLENLLASFRRNYP 635
Query: 1005 KLVFPPLPERGDFDLREVLGSPYFFN 1030
+ FP +P+ D DL +VL SPYFF+
Sbjct: 636 NVDFPDVPKSHDLDLSQVLESPYFFH 661
>gi|89148144|gb|ABD62815.1| mitochondrial single-subunit RNA polymerase [Vermamoeba vermiformis]
Length = 992
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 331/869 (38%), Positives = 482/869 (55%), Gaps = 61/869 (7%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQE----- 250
Q+ +E EA E+ A +++EL+ D+ + L L WF+PL + E++
Sbjct: 151 QLYLEMEAVEREAKKFKELVDDVLKLNRGACLDPGTEFLLQWFQPLVKLLDLEKQLSLAD 210
Query: 251 -------RCRMAKHKVAYAPYF--------DQLPADMMAVITMHKLMGLLMTGGEHGRAR 295
R + V Y + +++ +D +AVI +H+L+G E R
Sbjct: 211 PGVHQELRASVEALGVLYNEQYLHEYHAHTNEVASDKLAVIVIHELIGAAAGLKEQSPVR 270
Query: 296 -VVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 354
VVQ I +A++ EV ++ + E++ D + S TV K +K+V +
Sbjct: 271 SVVQQ---ISEAVQGEVNWQDLKDELENPAESRATPDSAENPSGTVPA---KKKKRVVNF 324
Query: 355 IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF- 413
+L RR +K W + + +G+R++ LL A ++ D IF
Sbjct: 325 TSVNRLN--RRALKVLGSEALWSRGLKEFMGARLLALLLSVAQLRE-----EDPVTGIFH 377
Query: 414 --PAFTHALRTVSKETKGGSKKYGV---IECNPLVLKGLERTARHMV--IPYMPMLVPPV 466
PAF + RT ++ S + + V + H I PM +PP
Sbjct: 378 ARPAFEVSHRTQHRKEGMDSTHNPSRLSVSASEAVRARFDAMMTHFFHFIRQYPMQIPPR 437
Query: 467 KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526
W D+G + + + R ++Q + R L ++E L+ LG T WR+ RV
Sbjct: 438 PWDSPDRGGYLAVQVPIFRYQSYEEQFRPLFRK-SDDLAVIYEGLNALGETPWRIYQRVY 496
Query: 527 SVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
V+ R W GG LAD+ DR D P P ++ +W +++ + + N + S R D
Sbjct: 497 HVVKRAWEQGGDLADIPDRRDKPYPMPTALGKDS---RWYRQLKKIDQLNYDLVSLRADF 553
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
LK+ VA K D+ Y+PHN+DFRGR YP+ P+LNH+GSD+ RG+L FA+G+ LG+ GL
Sbjct: 554 LLKMEVAEKFMDKT-LYFPHNMDFRGRVYPVPPHLNHMGSDMSRGLLWFADGKPLGERGL 612
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
HWL+I LANLY G DK+ RL F + D I+ A +PLE R WW+ A+ P+Q LA
Sbjct: 613 HWLRIQLANLY--GFDKVPFSDRLDFVSKNQDKIYSCAQRPLEDR-WWVAADSPWQFLAA 669
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C A+ S+ P +++SH+P+ QDG+CNGLQHYAALG D GA +VNL+ ++P DVYS
Sbjct: 670 CFEYYNAMHSADPHSYVSHLPIQQDGTCNGLQHYAALGGDEQGAKSVNLLPSDRPQDVYS 729
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A V I RDA+ AV A+L +VDRK+VKQTVMTSVYGVT+IGAR QI
Sbjct: 730 DVAELVAQRIHRDAENGVAV------AQLSKGRVDRKVVKQTVMTSVYGVTFIGARQQIT 783
Query: 827 RRLKERG--APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPV 884
+K+ + + E++ AS Y A++T +L EMF AR IM WL CAK++A + + V
Sbjct: 784 NAMKDHRLLTHLTDNEMYQASQYIAQLTFESLKEMFTGARNIMDWLATCAKLVAKKGRLV 843
Query: 885 RWTTPLGLPVVQPYRKLGRH-TVKTSLQILTLQRETEK--VMVKRQRTAFPPNFVHSLDG 941
WTTPLGLPVVQPYR+ R TV+T +Q + L+ E K V RQR+AFPPNF+HSLD
Sbjct: 844 SWTTPLGLPVVQPYRRQSRTGTVETVVQSVALEHEPTKWPVYSNRQRSAFPPNFIHSLDS 903
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
+HM++TA+ C++ +T+A VHDS+WTH VD+MN ILREKFV+L+ PI + L + +
Sbjct: 904 THMLLTAIHCKRQQITYASVHDSFWTHPATVDDMNTILREKFVQLHGRPILKQLREYWTT 963
Query: 1002 SFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ P + P LP G F+L V SPYFF+
Sbjct: 964 THPDIKSPELPALGKFNLHLVKESPYFFH 992
>gi|298708570|emb|CBJ30655.1| mitochondrial DNA-directed RNA polymerase [Ectocarpus siliculosus]
Length = 1167
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 351/986 (35%), Positives = 517/986 (52%), Gaps = 131/986 (13%)
Query: 128 CPRGYATVAEAVSSTDV--EEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMG 185
CP A + A S DV EE+ V+ + E+ Q + + G+ G ++ +
Sbjct: 230 CPPQEAFSSAAASGADVVYEEEDDFVDPLMEIPQAVDR-----GDKGEDKDEVELP---- 280
Query: 186 SGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 245
Y L Q+ E ++ ++A +Y +++ ++ + ++ L W+ L+++I
Sbjct: 281 ---YSTLYQMQLDREDQSHQEACEKYGKMVKELMTMGKGTQMKPIERLLTTWYPALKESI 337
Query: 246 AKEQERCRMA---------------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE 290
+EQE + Y + L AD AV+ MH+++ L++ G
Sbjct: 338 EREQEAVWANVTDDNKGTVKTSGSFGGRGTYGAFLVMLKADKQAVLVMHEVVNLILASGN 397
Query: 291 HGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK 350
G V+A + + ++ EV + + + KK + E N K +
Sbjct: 398 KG-VSTVRACTRVAELVQAEVNLMRMKKDGKKGQRVQVSSLRHVREVN-------KQAQD 449
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA---YIQSPADQLA- 406
D+++ W A+ K+G+ +I+LL +TA Y + A
Sbjct: 450 ALDMLEDTH----------------WPIGAQVKLGAALIKLLIETACWTYDKESGVVTAW 493
Query: 407 ----------DAPPDIFP----AFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERT 450
+ + FP AF H + KG + + G + P + + E
Sbjct: 494 DKGGAERGGGERDTEGFPMPKAAFVHDI------IKGKNSRKGSLTMAPEIFSKMVDEDI 547
Query: 451 ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 510
+R ++PMLVPP+ W ++G L + +MRT G Q+ ++R +Q V++A
Sbjct: 548 SRLATPRFVPMLVPPLDWIKPNRGGFLRLRAQIMRTKGEAAQKHALRRADLRQ---VYKA 604
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP---------------- 554
L+ LG +WR+N VL + + DL D+PLP +P
Sbjct: 605 LNCLGKVRWRINGHVLDTVMVCLRDKIAVGDLPVIKDLPLPPRPDGVTVDRLGRLRAPVQ 664
Query: 555 -ETEDEAQLRKWQWK-------VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
E EDE ++ + K + K++N HS RCD+++K+ +A++ +D Y+P+
Sbjct: 665 GEHEDEEVFKERRQKHYAYKRLLEKTKQKNANMHSLRCDMKIKVDIAQEFRDHV-IYFPY 723
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
N+DFRGR YP+ P LN LGSD RG+L F E + LG+ GL+WLK+HLANLY G DK+S
Sbjct: 724 NMDFRGRTYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLY--GEDKVSF 781
Query: 667 EGRLAFTENHLDD----IFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
+ R+AF E H+D+ + DSA +PLEG WW A+ P+QCLAVC +LT AL S P +
Sbjct: 782 DDRVAFVEKHMDESWREVRDSALRPLEGECWWKDADSPWQCLAVCADLTAALDSPDPARY 841
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
+S +PVHQDGSCNGLQHYAALG D G A VNL +P DVYSG+ V + +A
Sbjct: 842 LSRLPVHQDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVALEAST 901
Query: 783 DPAVFPDALR------AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL------- 829
P + AK++ +DRK+VKQTVMTSVYGVT++GAR QI+ L
Sbjct: 902 VPPEGASVVDLANHEIAKMVDGLIDRKVVKQTVMTSVYGVTFVGARAQIQNVLGDKMIGH 961
Query: 830 -KERGAPMEEAE--LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRW 886
E G P E E ++ AS Y AK T+T L E+F AR M WL ++++A E+QP+ W
Sbjct: 962 TDESGVPSAEVEENVYKASAYVAKHTMTVLEELFTEARNTMDWLKAVSQLVAKEDQPMSW 1021
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEK--VMVKRQRTAFPPNFVHSLDGSHM 944
TPLGLPV+QPYR+ + V+T LQ + ++ +++K V VKRQ TAFPPNFVHSLD +HM
Sbjct: 1022 ITPLGLPVLQPYRRTDTYQVQTLLQGVHIREDSDKLPVAVKRQTTAFPPNFVHSLDSTHM 1081
Query: 945 MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP 1004
MMTA+ K G+ FA VHDSYW HA +VD MN LR+ FV+LY PI E+L DS + +P
Sbjct: 1082 MMTAIEMDKVGVPFAAVHDSYWVHAGNVDVMNDKLRQCFVDLYSGPILEDLHDSLRMRYP 1141
Query: 1005 KLVFPPLPERGDFDLREVLGSPYFFN 1030
+ FPP+PERG L V S YFFN
Sbjct: 1142 TIDFPPIPERGTLVLDSVKDSKYFFN 1167
>gi|395323448|gb|EJF55919.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 1273
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 335/852 (39%), Positives = 479/852 (56%), Gaps = 100/852 (11%)
Query: 230 MKSLFLGWFEPLRDAIAKEQER--------CRMAK-----HKVAYAPYFDQLPADMMAVI 276
+KS W + L+ I E E RM + ++ +P+ L + +++I
Sbjct: 344 LKSWMWEWHQKLQQRIKAEVENLIVEERILARMKRRSTKSEEILLSPFLRMLSPEKLSLI 403
Query: 277 TMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKN---ETKNKEDEE 333
T+ ++M L +GG + +A +G A+E E HK E KK N
Sbjct: 404 TIMEMMNLHGSGGVQDGMKTARALLSVGRAVEAE---HK-AEICKKNNISIPVPAVNAPR 459
Query: 334 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 393
N T + K DL + ++ A + + ++ W Q R KVGS +++ +
Sbjct: 460 AGVQNIFTGDGYK------DLYAR-RVTAAKYMEDAEEWTSDWSQLIRVKVGSFLLDCIM 512
Query: 394 QTAY----IQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLER 449
A IQ P + + + PAF+H S E + G +K GVI+ NP V + +
Sbjct: 513 DVATVSRTIQDP--RTGEKFTEEQPAFSH-----SYEYQRG-RKLGVIKFNPAVADRMSK 564
Query: 450 --TARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEP 506
A + ++PMLV P W Y+ G + + S+ MR +++Q ++ + +LE
Sbjct: 565 DPIADTLHPRHLPMLVKPKPWLSYNNGGYLYSRSWAMRFKDSREQEIYLRHASEAGRLEL 624
Query: 507 VFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR-NDVPLPEKPE---TEDEAQL 562
VF LD LG+T W++N RV V+ ++W+ G R A + D P P +PE T+++A++
Sbjct: 625 VFAGLDVLGSTPWQINRRVFDVVLQVWNSGERFAKIPPAIPDEPEPVRPENMDTDNKAKV 684
Query: 563 ----RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMH 618
R+ QW + HS RC + K+ +AR + Y PHNVDFRGRAYP+
Sbjct: 685 VYLERQRQWM-----QNKAANHSDRCSVNYKVEIARAFLGD-TIYLPHNVDFRGRAYPIP 738
Query: 619 PYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLD 678
P+L+H+G DL RG+L F E + LG GL WLKIHLANLY G DK S + R+ + HL+
Sbjct: 739 PHLSHIGDDLSRGLLIFEEKKPLGTRGLRWLKIHLANLY--GYDKASFDERVEYVHKHLE 796
Query: 679 DIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQ 738
DIFDSADKPLEGRRWW KA+DP+QCLA C+ LT ALRS PE + +PVHQDG+CNGLQ
Sbjct: 797 DIFDSADKPLEGRRWWTKADDPWQCLATCMELTSALRSPDPEAYECGLPVHQDGTCNGLQ 856
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS 798
HYAALG D GAA VNL A ++P+DVY+ +A V I+ D ++D + AKLL
Sbjct: 857 HYAALGGDAQGAAQVNLAAADRPSDVYTYVANMVEKQIEEDIKKDDPI------AKLLEG 910
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-APMEEAELFGASCYAAKVTLTALG 857
+V RK+VKQTVMT+VYGVTY+GARDQI+R+LK+RG P E + AS Y AK L ++G
Sbjct: 911 KVSRKVVKQTVMTTVYGVTYVGARDQIERQLKDRGDIPAEMC--WSASAYLAKNVLASIG 968
Query: 858 EMFQAARGIMSWLGECAKIIA----------SENQP---------------------VRW 886
++F+ A+ I +WL CA++IA S +P V W
Sbjct: 969 DLFKGAKDIQNWLNLCARLIAKAIPQDRLVQSFTEPEKPNARSRKKEPRWKKEQMTSVVW 1028
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDGSHM 944
TTPLGLP+VQPYR + R V TS+Q + + T V ++Q +AFPPNF+HSLD +HM
Sbjct: 1029 TTPLGLPIVQPYRAVKRKQVMTSIQTVFISDPTSPSTVNAQKQASAFPPNFIHSLDATHM 1088
Query: 945 MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP 1004
M+TA+ CR GLTFA VHDSYWTHA +D+M+ I+R+ F+ L+ + + L D F++ +
Sbjct: 1089 MLTALECRARGLTFASVHDSYWTHASSIDQMSEIIRDTFIALHSSDVLKGLYDEFRERYA 1148
Query: 1005 KLVFPPLPERGD 1016
P + RG+
Sbjct: 1149 DYKIPLVSLRGN 1160
>gi|89029825|gb|ABD59451.1| mitochondrial single-subunit RNA polymerase [Acanthamoeba
castellanii]
Length = 512
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 268/518 (51%), Positives = 361/518 (69%), Gaps = 17/518 (3%)
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET--EDEAQLRKWQWKVRNVKKEN 576
+ +NNR+ V+ W GG +ADL R ++P E P D +K+ + + K N
Sbjct: 4 FSINNRMHEVICEAWDNGGGIADLPSRTNLPELEPPADYYSDLEVKQKFDRERKKAKIAN 63
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
HS RCD+ KL VA++ +D FYYPHN+DFRGR YP+ P+LNHLG DLCRG+L FA
Sbjct: 64 YNLHSLRCDVTYKLQVAKECQDRT-FYYPHNMDFRGRTYPIPPHLNHLGQDLCRGLLTFA 122
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
EG+ LG+SGL WLK+HLAN++ G DK++ E R+ F EN+++ I DSA PL G+RWWLK
Sbjct: 123 EGKPLGESGLRWLKVHLANVF--GNDKITFEDRVRFVENNMEHIMDSASNPLGGQRWWLK 180
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
A+ P+QCLA I L A S PET++S +P+HQDGSCNGLQHYAALG D +GA VNL+
Sbjct: 181 ADKPWQCLAASIELINAYNSGQPETYVSTLPIHQDGSCNGLQHYAALGGDEMGARQVNLL 240
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
E+P DVYSG+ V+ ++ DA + A+ LL +VDRK++KQTVMTSVYGV
Sbjct: 241 PSERPQDVYSGVVELVVRRLEDDAANGVEI------AQRLLGKVDRKVIKQTVMTSVYGV 294
Query: 817 TYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKI 876
T+IGAR QI+ LK++G + + ++F AS Y A T +++ EMF AR IM+WL +CA +
Sbjct: 295 TFIGARQQIENALKDKGK-VSDDDMFLASRYLATSTFSSIKEMFSGAREIMTWLSDCATL 353
Query: 877 IASENQPVRWTTPLGLPVVQPYRKLGRHT--VKTSLQILTLQRETEK---VMVKRQRTAF 931
IA + +PV W TP+GLPVVQPYR G+ T V T+LQ + L +E V ++QRTAF
Sbjct: 354 IAKQGKPVTWVTPMGLPVVQPYRTKGKQTQTVVTALQNVMLVKEENDSLPVNTRKQRTAF 413
Query: 932 PPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 991
PPN+VHSLD +HMM+TA+ C +AGLT+A VHDSYWTHA VD MN ILR FV+L+ P+
Sbjct: 414 PPNYVHSLDSTHMMLTALQCHEAGLTYASVHDSYWTHASSVDTMNHILRRTFVDLHSQPL 473
Query: 992 FENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
++LL F++++P + FPP+P +GD DL+E++ SPYFF
Sbjct: 474 LDDLLAHFKRTYPGIEFPPVPPKGDLDLKEIINSPYFF 511
>gi|428185822|gb|EKX54674.1| RNA polymerase, single subunit, mitochondrial [Guillardia theta
CCMP2712]
Length = 1194
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 315/783 (40%), Positives = 473/783 (60%), Gaps = 59/783 (7%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
P LPA +AVIT+H+L+ L++GG + V+AA +G+ I+ E+ LE K
Sbjct: 457 GPILMSLPASKIAVITIHELLSSLLSGGG--QVHFVRAARTVGEGIQAELG----LEHVK 510
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
K KN+ ++++ L K + + +++ + W +
Sbjct: 511 K---AKNRFLLSS--------------RRLSALCKAHDVRKLNKLLSRLESQPLWDARMQ 553
Query: 382 AKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNP 441
KVG+++I++L +A + A A TH ++ ++ + G +K G + +
Sbjct: 554 VKVGAKLIQILMNSAKYKGSA------------AVTHVVQ--AQMSNKGMRKKGFLALDQ 599
Query: 442 LVLKGLER----TARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 497
+L+ LE+ A H + +PM++ P W +D G + + VMR Q ++ +
Sbjct: 600 EILQDLEKQHDSVAAHNPL-LLPMIIRPFPWMSFDVGCYIQARTKVMRIVDKGLQEESCR 658
Query: 498 RTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE-KPET 556
L ++ ALD L T W +N R+L+V+ W L ++ ++D +PE P+
Sbjct: 659 ---NHDLSRIYAALDVLSGTGWCINRRLLNVVQHAWLDDMILGEIPQKDDFAVPELDPDC 715
Query: 557 EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYP 616
D A+ + + V++ N++ HS RC + +L VA M D + F++PHN+DFRGRAYP
Sbjct: 716 IDAAESYSQYREKKRVEQRNKDLHSLRCSLINQLHVATTMSDFKEFFFPHNLDFRGRAYP 775
Query: 617 MHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENH 676
+ P+LNHLGSD+CRG+L+F++ + LGK G +WLK+HLANL+ G +K+S++ R+ +TE
Sbjct: 776 IPPHLNHLGSDICRGLLKFSKKKPLGKKGFYWLKVHLANLF--GENKISYDDRVKWTEER 833
Query: 677 LDDIFDSADKPLEG--RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSC 734
+ I SA PL+ R++WL A+DP+Q LA + + EA+ S P T++S++PVHQDGSC
Sbjct: 834 MSQILHSAKNPLDSASRKFWLSADDPWQALATSMEIQEAIESGDPSTYLSNLPVHQDGSC 893
Query: 735 NGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAK 794
NGLQHYAALG D +G VNLV EKP+D Y+ + RVL + D RDP+ D +K
Sbjct: 894 NGLQHYAALGLDEIGGEQVNLVPGEKPSDPYTTVCNRVLEALDMDL-RDPSS-ADHEVSK 951
Query: 795 LLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAP----MEEAELFGASCYAA 849
L+ +V RK+VKQTVMT+VYGVT+IGAR+QI RL E G P ++E +L+ AS Y A
Sbjct: 952 LVDKRVSRKVVKQTVMTTVYGVTFIGAREQIYNRLYEAYGIPGTNELQENDLYRASMYLA 1011
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS 909
K+TL ++G +F AR M WL AKI+AS QPVRWTTPLGLPVVQPY K +V+T+
Sbjct: 1012 KLTLASVGNIFVGARKTMEWLTSVAKIVASTGQPVRWTTPLGLPVVQPYYKETMMSVETA 1071
Query: 910 LQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWT 967
+Q ++L + E + +QRTAFPPNFVHSLD +H++MTA+ + G TFAGVHDS+WT
Sbjct: 1072 VQNISLLKCDENGPINKLKQRTAFPPNFVHSLDSTHLLMTAIEFDRRGKTFAGVHDSFWT 1131
Query: 968 HACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPY 1027
HACD +E+ +LRE+FV LY PI +L +SF++ +P + P+P +G D+ V SPY
Sbjct: 1132 HACDYEELALVLREQFVHLYTQPILNDLKNSFERDYPTIGRLPVPLKGRLDINVVKQSPY 1191
Query: 1028 FFN 1030
FF+
Sbjct: 1192 FFS 1194
>gi|66827985|ref|XP_647347.1| DNA-dependent RNA polymerase [Dictyostelium discoideum AX4]
gi|13991700|gb|AAK51466.1|AF361480_1 DNA-dependent RNA polymerase RpmA [Dictyostelium discoideum]
gi|15004256|gb|AAK73754.1| T3/T7 bacteriophage-like mitochondrial RNA polymerase [Dictyostelium
discoideum]
gi|60475225|gb|EAL73160.1| DNA-dependent RNA polymerase [Dictyostelium discoideum AX4]
Length = 950
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/579 (46%), Positives = 375/579 (64%), Gaps = 20/579 (3%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
PM++ P+ W +G + +MRT+G+ Q T+ + + ++ AL+ LG T
Sbjct: 385 FPMVIKPLPWITPTEGPYLHYKVPIMRTNGSAMQLRTLVDS---DMSLIYRALNILGETP 441
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETE--DEAQLRKWQWKVRNVKKEN 576
W +N + +V+ W+ GG + D+ R D PE + D ++ K + +K N
Sbjct: 442 WVINRDLYNVILEAWANGGNIGDIPKRTDFEYPEISDDMLFDHEARKELYKKEQRIKSLN 501
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
HS RCD KL VARK D Y+PHN+DFRGR+YP+ P+LNHLGSD CR +L+F
Sbjct: 502 FNLHSLRCDTNYKLEVARKFLDHT-LYFPHNIDFRGRSYPIPPHLNHLGSDFCRSLLKFE 560
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+ LG+ GL WLKIH+ANLY GVDK+ RLAFTE ++++IFDS D PL G +WWLK
Sbjct: 561 KSLPLGEKGLEWLKIHVANLY--GVDKIPLNERLAFTERNMENIFDSVDSPLNGNKWWLK 618
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
A++P+Q LA C+ LT+A+RS P F+S++P+HQDG+CNGLQHYAALG D GA VNL+
Sbjct: 619 ADNPWQTLAACMELTKAIRSGKPAEFLSNLPIHQDGTCNGLQHYAALGGDVWGAEKVNLL 678
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
+ P DVYS +A V I++ DA+ + A+ L +VDRKLVKQTVMTSVYGV
Sbjct: 679 PSDCPQDVYSSVAQLVEQIVEEDAKNGDEI------AQFFLGKVDRKLVKQTVMTSVYGV 732
Query: 817 TYIGARDQIKRRLKERGAPMEEAE--LFGASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
TYIGAR+QI+ + E+ + ++ E +F +S Y K T +L MF AR IM W+ +CA
Sbjct: 733 TYIGAREQIENAILEKFSDLDLDEDFIFKSSTYITKNTFASLNNMFVGARSIMKWMSDCA 792
Query: 875 KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRETEKVMVKRQRTAF 931
+IA V W TPLGLPVVQPY+K G++ ++T L+ I+ + +V RQR+AF
Sbjct: 793 TLIAKSGHCVTWNTPLGLPVVQPYKKGGKYNIRT-LECDFIVVHNDDLLQVDSNRQRSAF 851
Query: 932 PPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 991
PPNF+HSLD +HM +TA+ C G+T++ VHDSYWTHA VD MN ILR +FVEL++ PI
Sbjct: 852 PPNFIHSLDSTHMFLTAMTCYDQGITYSSVHDSYWTHASTVDRMNDILRNEFVELHKQPI 911
Query: 992 FENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
E LL+ FQ +P + FP LP++G+ D+ +V S YFF+
Sbjct: 912 LERLLEWFQVRYPDIKFPKLPKKGELDINKVKESRYFFH 950
>gi|342319535|gb|EGU11483.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1343
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 336/917 (36%), Positives = 497/917 (54%), Gaps = 85/917 (9%)
Query: 155 QELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYR---MLKMRQVKIETEAWEKAANEY 211
+E + E+ + +GEN S + RG+ R L RQ +E +++ A Y
Sbjct: 317 KENVAEVAPVQGDKGENVSLGMLKHNLRGLAVNTGRDGLPLSARQRLLEESSYDAARQLY 376
Query: 212 ---RELLMDMCEQKLAPNLPYMKSLFLGW----FEPLRDAIAKEQERCRMAKHKVAYAPY 264
RE L + + + +++ + W + L D A +++ P+
Sbjct: 377 IHSREQLAQIGKDEGGLQSNWIQQIMFDWHKKLVKTLEDIAAGKRKDIDSGFRDRELEPF 436
Query: 265 FDQLPADMMAVITMHKLMGLLMTGGEHGRA-RVVQAACIIGDAIEQEVRIHKFLEK--TK 321
LP D +A+IT+ ++M + +G + + +G A+E E + TK
Sbjct: 437 LQLLPVDKLALITIVEVMRMCGSGTFAADGMKTTRVVLNVGRAVENEHHAEALRDSLSTK 496
Query: 322 KKNETKNKEDEEG--DESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP-WGQ 378
K E K + G + TVT R++ L + +R G + P W Q
Sbjct: 497 KLQEELAKVESRGTINPDGTVTP-----RRQTESLGILWRRELAKREEDGDSTWHPNWTQ 551
Query: 379 DARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKKYGV 436
RA+VGS ++ L + A ++ + + + PAF+HA + + K G+
Sbjct: 552 TIRARVGSVLVSALMEIAEVERTIKHPKTGEQVSEKQPAFSHAYQYMR------GTKLGI 605
Query: 437 IECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRD 494
I+ NP V + L++ + + ++PMLV P W ++ GA+ + +MRT +++Q
Sbjct: 606 IKLNPAVSERLDKDPLDITLHPRFLPMLVKPKPWLTWNSGAYLLHQTPMMRTKESEEQVQ 665
Query: 495 TVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL---VDRNDVPL 550
+++ L+ +F LDTLG W++N +V + ++W+ G AD+ + ++P
Sbjct: 666 YLQQASDNHTLDIIFSGLDTLGAVPWKINRKVFDTVVQVWNSGDAFADIPAAAQKLEIPT 725
Query: 551 PEKPE--TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
E P+ D ++ +VR + ++ R HS RCD+ KL +AR E FY+PHN+
Sbjct: 726 LEIPKGVMSDPRARDNYRRRVRELMQQKRAAHSMRCDLNYKLEIARAFLGET-FYFPHNL 784
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGRAYP+ P L+H+G D+ RG+L FAE + LG+ GL WLKIH++NL G DK S +
Sbjct: 785 DFRGRAYPIPPNLSHIGDDMSRGLLLFAESKPLGERGLRWLKIHVSNLM--GFDKASFDE 842
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
R AFT HL+D+FDSAD PLEGR+WW KA+DP+QCLA CI LT ALRS P + +P+
Sbjct: 843 REAFTMEHLEDVFDSADNPLEGRKWWTKADDPWQCLATCIELTNALRSEDPTKYECGLPI 902
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
HQDG+CNGLQHYAALG D GA VNL ++PADVYSG+A V II RD +
Sbjct: 903 HQDGTCNGLQHYAALGGDINGARQVNLDIGDRPADVYSGVAQMVQEIITRDVE------A 956
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-APMEEAELFGASCY 847
AKLL ++ RK+VKQTVMT+VYGVT+IGA++QI+R+LK+RG P E L+ S Y
Sbjct: 957 GVEEAKLLDGKITRKVVKQTVMTTVYGVTFIGAKNQIERQLKDRGDVPAE--RLYKCSIY 1014
Query: 848 AAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR---------------------- 885
++ L ++G++F+ A I +WL CA++IA P R
Sbjct: 1015 LGRLVLDSIGDLFKGAAAIQTWLNRCARLIAKSIPPQRIEAALKQEKPGKNKSKKALALS 1074
Query: 886 -----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQRTAFP 932
WTTPLGLPV QPYR+ + V+T+LQ + + + +V + Q TAFP
Sbjct: 1075 RIPKEQMTSVVWTTPLGLPVCQPYRRPKKKQVQTALQTVHIWDPSIPAEVDPRAQATAFP 1134
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HMMMTA+AC K + FA VHDSYWTHACDVDEM+ ILR+ F++L+ I
Sbjct: 1135 PNFIHSLDATHMMMTALAC-KGKIAFASVHDSYWTHACDVDEMSTILRDTFIDLHSQDIL 1193
Query: 993 ENLLDSFQKSFPKLVFP 1009
L D F + V P
Sbjct: 1194 GRLRDEFIHRYAGHVVP 1210
>gi|384250319|gb|EIE23799.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 591
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 280/598 (46%), Positives = 374/598 (62%), Gaps = 35/598 (5%)
Query: 461 MLVPPVKWTGYDKGAHFFLPSYVMRTH----GAKQQRDTVKRTPKKQLEPVFEALDTLGN 516
ML+PP+ W +D G H + +MR H G + +T + L V++AL+ +G
Sbjct: 1 MLIPPLPWRSHDSGGHLIMRGSIMRVHTYPKGVSRAIETAQERTPYGLSRVYDALNAVGE 60
Query: 517 TKWRVNNRVLSVLDRIWSCGGRLADL----VDRNDVPLPEK----------------PET 556
W +N +L+V++R W+ + L VD+ P
Sbjct: 61 VPWAINKPMLAVVERAWAAQLPICGLPVKYVDQKPQPKSTAKRFRTHHHRHQLQLLLTSQ 120
Query: 557 EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYP 616
E A+ K R + K RE HS RCD+ LKL VA + KDE FY+PHN+DFRGRAYP
Sbjct: 121 ETGAERTKRMKGNRLLNKRIRETHSLRCDLNLKLGVANEFKDELRFYFPHNLDFRGRAYP 180
Query: 617 MHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENH 676
+HP+LNH+G D+CRG+L FAE R LG G+ WL + +AN + +DK+ EGR F + +
Sbjct: 181 LHPHLNHMGPDVCRGLLTFAEARPLGPDGIGWLYVLIANSWGKSIDKMDFEGRRQFAQRN 240
Query: 677 LDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNG 736
L+ + DSA++PL+G RWW K E P+Q LA C+ + +AL S +P ++S +PV DGSCNG
Sbjct: 241 LEAVLDSAERPLDGHRWWTKGEKPWQLLAACMEVRDALASGNPAAYLSRLPVQIDGSCNG 300
Query: 737 LQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLL 796
LQHYAALGRD G +AVNL P DVY IA V ++ DA++ P+AL L
Sbjct: 301 LQHYAALGRDKAGGSAVNLRPAPAPQDVYGEIAVEVNKMVAADAEKG---VPEAL---AL 354
Query: 797 LSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTAL 856
++RKLVKQTVMTSVYGVTY+GAR QI+ RL ERG + +L+ + YAA++TL L
Sbjct: 355 QGHINRKLVKQTVMTSVYGVTYVGARQQIQNRLLERGWSNND-QLYRCASYAARLTLQGL 413
Query: 857 GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ--ILT 914
E F A GIM WLG+CA I+AS+ V W TPLGLPV+QPYR+ +H V+T LQ IL
Sbjct: 414 EEKFDKAVGIMRWLGQCASIVASQGNAVAWHTPLGLPVLQPYREKYKHVVQTVLQRLILM 473
Query: 915 LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
RE V+ +RQ++AFPPN+VHSLD +HMMMTA+AC++AG+ FAGVHDS+WTHA D
Sbjct: 474 QDREGLPVLRRRQKSAFPPNYVHSLDSTHMMMTALACKQAGIAFAGVHDSFWTHAGDTAV 533
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
+ R LRE FVEL+ P+ LL + +P+L FPPLPE G+ DL EVL + YFF
Sbjct: 534 LARKLRETFVELHSQPLLAQLLSEMKVRYPELAQKFPPLPETGELDLNEVLDAEYFFG 591
>gi|409043331|gb|EKM52814.1| hypothetical protein PHACADRAFT_261459 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1324
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 327/874 (37%), Positives = 482/874 (55%), Gaps = 85/874 (9%)
Query: 178 RRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGW 237
RRV S + ++L+ + E W+ A + EL + K + ++ W
Sbjct: 363 RRVLPEDASARQKLLEESVYDVAVERWKHEAEMFEELGLG----KKGLDSTDLRGWLWQW 418
Query: 238 FEPLRDAIAKEQERCRMAKHKVA-------YAPYFDQLPADMMAVITMHKLMGLLMTGGE 290
+ L+ +A E + A+ + +P+ + + +++IT+ +LM L GG
Sbjct: 419 HQKLQMRVAGEIQNLIKAEMALTERNAGSRLSPFLTLIKPEKLSLITILELMHLQGAGGV 478
Query: 291 HGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK 350
+ +A +G A+E E + E KK N + T Q+
Sbjct: 479 SDGMKTARALISVGKAVEIEYKA----EMCKKNNIAV---------PSPATQRQQSFFSN 525
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKP-WGQDARAKVGSRVIELLTQTAYIQSPA-DQLADA 408
+ ++ A R+ ++ +++ W Q R +VGS +++ L A + A D+ +
Sbjct: 526 LGYRALHERRLAARKYMEDYEEWTSEWTQTIRVRVGSFLVDALMDVATVSRTAIDKHGEL 585
Query: 409 PPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLER-TARHMVIP-YMPMLVPPV 466
+ PAF H+ + +K GVI+ NP+V L + R + P ++PMLV P
Sbjct: 586 HTEEQPAFYHSYEYLR------GQKLGVIKLNPVVADRLAKDQVRETLHPRHLPMLVRPK 639
Query: 467 KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRV 525
W +D+G + + + VMR +++Q+ V+ + + LE V+ +LD LG T W++N +
Sbjct: 640 PWLSHDQGGYLYNKTSVMRYKDSREQQSYVREASSQGALELVYASLDVLGGTPWKINRHI 699
Query: 526 LSVLDRIWSCGGRLADLVDR-NDVPLPEKP---ETEDEAQLRKWQ-WKVRNVKKENRERH 580
V+ ++W+ G RL + D P PEKP +T+ +A++ Q K KK N H
Sbjct: 700 FDVVLKVWNSGERLGKIPPAMYDQPEPEKPADHDTDPKAKVAYLQRHKAYMSKKANN--H 757
Query: 581 SQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRT 640
S RC+ K+ +AR + Y PHNVDFRGRAYP+ P LNHLG DL RG+L+FAE +
Sbjct: 758 SDRCNTNYKIEIARAFLGDT-VYLPHNVDFRGRAYPIPPNLNHLGDDLSRGLLKFAEAKP 816
Query: 641 LGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDP 700
LG+ GL W+KIHLANLY G DK S + R+ F HLDDIFDSA PLEGR WW KA+DP
Sbjct: 817 LGERGLRWMKIHLANLY--GYDKASFDERVVFVHEHLDDIFDSATNPLEGRGWWKKADDP 874
Query: 701 FQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK 760
+QCLA C+ + AL S P + S +PVHQDG+CNGLQHYAALG D GA VNL ++
Sbjct: 875 WQCLATCMEIRAALESPEPTEYASSLPVHQDGTCNGLQHYAALGGDAQGAQQVNLSVTDR 934
Query: 761 PADVYSGIAARVLVIIQRDAQRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYI 819
P+DVY+ +A V ++ +DA+ D LR AK+L ++ RK+VKQTVMT+VYGVT+I
Sbjct: 935 PSDVYTHVATMVESVLAQDAKND-------LRYAKMLSGKIARKVVKQTVMTTVYGVTFI 987
Query: 820 GARDQIKRRLKE-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
GARDQI+R+L++ R P EE L A+ Y AK+TL +G++F A+ I +WL AK+I+
Sbjct: 988 GARDQIERQLRDRRDLPAEECWL--AAAYLAKITLACIGDLFTGAKHIQNWLNLSAKLIS 1045
Query: 879 SENQPVR---------------------------WTTPLGLPVVQPYRKLGRHTVKTSLQ 911
P R WTTPLGLP+VQPYR+ R + T+LQ
Sbjct: 1046 KSIPPERIEEATKPSAKKGRVETRLKKEQMTSVIWTTPLGLPIVQPYRQTKRKQIHTALQ 1105
Query: 912 ILTLQRETEKVMVK--RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
+ + V +Q +AFPPNF+HSLD +HMM+TA+ CR +TFA VHDSYWTHA
Sbjct: 1106 TVFISDPNVPAAVNSTKQASAFPPNFIHSLDATHMMLTALQCRNRDITFASVHDSYWTHA 1165
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
C VDEM+ I+RE F+ L+ + L + F++ +
Sbjct: 1166 CSVDEMSEIIRETFIALHSSDVMAKLDEEFRERY 1199
>gi|300120043|emb|CBK19597.2| unnamed protein product [Blastocystis hominis]
Length = 595
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 281/583 (48%), Positives = 371/583 (63%), Gaps = 19/583 (3%)
Query: 456 IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLG 515
I Y PMLVPP W D G + MRTHG+K Q D + + L VF +L+ LG
Sbjct: 24 IRYKPMLVPPRPWLSVDSGGFISQKTVFMRTHGSKLQTDCLYQA---DLTSVFRSLNILG 80
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575
W +N VL V + +W GG D+ R D+ +P+ E E E + RK K+ K++
Sbjct: 81 KVGWVINKDVLKVAEAVWENGGGELDIPSRTDLKMPDPSEFESEKKYRKAMMKI---KQK 137
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
N + HS RCD+ KL +AR+ +++ Y+P N+DFRGR YP+ P+LNHLG+DLCRG+L F
Sbjct: 138 NYDLHSLRCDLGYKLDIAREFQNDT-IYFPMNLDFRGRVYPIPPHLNHLGNDLCRGLLSF 196
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
A + LG+ GL WLKI +ANLY G DK+S + R + + HL I +S PL WW
Sbjct: 197 ARKKPLGERGLFWLKIQVANLY--GNDKISFDDRSKWVDEHLPAIRESVRNPLAPNAWWK 254
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
+ +DP+Q LA C+ A+ S PE ++S+IPVHQDGSCNGLQHYAALG D G VNL
Sbjct: 255 EGDDPWQLLATCMEYIRAIDSPHPEAYLSNIPVHQDGSCNGLQHYAALGLDKTGGTQVNL 314
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS--QVDRKLVKQTVMTSV 813
V KP DVYS + V I D R+P A+ A+LL +V+RK+VKQTVMTSV
Sbjct: 315 VPSSKPGDVYSAVLRIVKERIHEDL-RNPDASIRAM-AELLRGGEEVNRKVVKQTVMTSV 372
Query: 814 YGVTYIGARDQIKRRLKER----GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
YGVT++GAR+QI+ +L R ++ L+ S Y A +TL ++G + A IM+W
Sbjct: 373 YGVTFVGAREQIEGQLNARRDDKKIDFDDDMLYALSMYLAGLTLGSIGVTNKGATTIMAW 432
Query: 870 LGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE--KVMVKRQ 927
L + A IIA N PV W TPLGLPVVQPYRK + T++Q + ++ + V+ ++Q
Sbjct: 433 LNKIAAIIAHTNSPVCWVTPLGLPVVQPYRKENVFHIATAMQDVQVKVNNDVLPVLTRKQ 492
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+AFPPNFVHSLD +HMMMT++ C K + FA VHDSYWTHACDVD MN +LRE+FV+LY
Sbjct: 493 SSAFPPNFVHSLDSTHMMMTSLVCDKYDMDFATVHDSYWTHACDVDTMNHLLREQFVKLY 552
Query: 988 EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI EN L+S +P L FPP+PE+GD DL+ VL SPYFFN
Sbjct: 553 SQPILENFLESLVIRYPSLTFPPIPEKGDLDLKCVLESPYFFN 595
>gi|401883409|gb|EJT47618.1| Rpo41 [Trichosporon asahii var. asahii CBS 2479]
Length = 1321
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/793 (38%), Positives = 464/793 (58%), Gaps = 73/793 (9%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFL----EK 319
Y LP +A+IT+ +LM ++ +GG + ++++ +G AIE E R EK
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDGMKLLRGVMGVGRAIEAEYRADMIRSIAGEK 492
Query: 320 TKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG-QDDFK---- 374
++ + + + ++ N +T +E R++ + + A + + G + D +
Sbjct: 493 SRLWQKVIDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLRAVWT 552
Query: 375 -PWGQDARAKVGSRVIELLTQTA-YIQSPADQL-ADAPPDIFPAFTHALRTVSKETKGGS 431
PW + +G+ ++E L +TA ++ D L + + PAF H+ V
Sbjct: 553 PPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSFEYVR------G 606
Query: 432 KKYGVIECNPLVLKGLER-TARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
+K GVI+ NP+V K L + R ++ P ++PMLVPP W +++G + +P+ +MR +
Sbjct: 607 RKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNSWKAWNQGPYLTIPTTMMRFKDS 666
Query: 490 KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL---VDR 545
+Q++ ++ K LEPVF LD L +T WR+N V V+ + W+ G +AD+ ++
Sbjct: 667 VEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVLKAWNDGDAIADIPATAEK 726
Query: 546 NDVPLPEKPETEDEAQLR-KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
++ +PEKP+ ++ R ++ ++ + + R+ H++RC L +AR ++ FY
Sbjct: 727 CEIVIPEKPDDPNDPTKRYEYVQAMKQLSLQQRKNHAERCKYNYNLEIARSYINDV-FYI 785
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLANLY G DK
Sbjct: 786 PHNLDFRGRAYPIPPHLSPVGDDLCRGLLTFGVKKPLGENGLRWLQIHLANLY--GYDKA 843
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S + R+ F+++H++DIFDSAD PL+G+RWWL+AEDP+QCLA C L ALRS P F S
Sbjct: 844 SFDERVQFSKDHVEDIFDSADHPLDGKRWWLQAEDPWQCLAACFELAGALRSGDPSKFES 903
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNG+QHYAALG D GA AVNL ++PAD+YS + A V I+ D ++
Sbjct: 904 SLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEQGDRPADIYSTVLALVNESIEADQKKG- 962
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
P AL L+ + + RK+VKQTVMT+VYGVT++GARDQI ++L+ RG M +++
Sbjct: 963 --VPTAL---LIKNPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLRARGD-MSSDDVWIT 1016
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKII--------------ASENQP------- 883
S Y AK L ++G +F AR I WL A+++ A +P
Sbjct: 1017 SAYIAKKVLNSIGSLFFGARAIQDWLTNTARLVSRAIPADRLEDATAAETKRPRGPRPGP 1076
Query: 884 ---------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKR 926
V WT+PLGLPVVQPYRK + V TS+Q + + +V ++
Sbjct: 1077 KSQVKSRIAKELMTSVVWTSPLGLPVVQPYRKPIKKQVMTSMQTVFISDPNAPSEVSPQK 1136
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
Q TAFPPNFVHSLD +HM++TAVAC +A +TFA VHDSYWTHA V+ M+ ++R+ F+ L
Sbjct: 1137 QATAFPPNFVHSLDATHMLLTAVACNQANITFASVHDSYWTHASTVEPMSEVIRDSFIHL 1196
Query: 987 YEMPIFENLLDSF 999
+ I L + F
Sbjct: 1197 HSNDIIGKLREEF 1209
>gi|406698149|gb|EKD01391.1| Rpo41 [Trichosporon asahii var. asahii CBS 8904]
Length = 1321
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/793 (38%), Positives = 464/793 (58%), Gaps = 73/793 (9%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFL----EK 319
Y LP +A+IT+ +LM ++ +GG + ++++ +G AIE E R EK
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDGMKLLRGVMGVGRAIEAEYRADMIRSIAGEK 492
Query: 320 TKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG-QDDFK---- 374
++ + + + ++ N +T +E R++ + + A + + G + D +
Sbjct: 493 SRLWQKVIDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLRAVWT 552
Query: 375 -PWGQDARAKVGSRVIELLTQTA-YIQSPADQL-ADAPPDIFPAFTHALRTVSKETKGGS 431
PW + +G+ ++E L +TA ++ D L + + PAF H+ V
Sbjct: 553 PPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSFEYVR------G 606
Query: 432 KKYGVIECNPLVLKGLER-TARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
+K GVI+ NP+V K L + R ++ P ++PMLVPP W +++G + +P+ +MR +
Sbjct: 607 RKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNPWKAWNQGPYLTIPTTMMRFKDS 666
Query: 490 KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL---VDR 545
+Q++ ++ K LEPVF LD L +T WR+N V V+ + W+ G +AD+ ++
Sbjct: 667 VEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVLKAWNDGDAIADIPATAEK 726
Query: 546 NDVPLPEKPETEDEAQLR-KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
++ +PEKP+ ++ R ++ ++ + + R+ H++RC L +AR ++ FY
Sbjct: 727 CEIVIPEKPDDPNDPTKRYEYVQAMKQLSLQQRKNHAERCKYNYNLEIARSYINDV-FYI 785
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLANLY G DK
Sbjct: 786 PHNLDFRGRAYPIPPHLSPVGDDLCRGLLTFGVKKPLGENGLRWLQIHLANLY--GYDKA 843
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S + R+ F+++H++DIFDSAD PL+G+RWWL+AEDP+QCLA C L ALRS P F S
Sbjct: 844 SFDERVQFSKDHVEDIFDSADHPLDGKRWWLQAEDPWQCLAACFELAGALRSGDPSKFES 903
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNG+QHYAALG D GA AVNL ++PAD+YS + A V I+ D ++
Sbjct: 904 SLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEQGDRPADIYSTVLALVNESIEADQKKG- 962
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
P AL L+ + + RK+VKQTVMT+VYGVT++GARDQI ++L+ RG M +++
Sbjct: 963 --VPTAL---LIKNPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLRARGD-MSSDDVWIT 1016
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKII--------------ASENQP------- 883
S Y AK L ++G +F AR I WL A+++ A +P
Sbjct: 1017 SAYIAKKVLNSIGSLFFGARAIQDWLTNTARLVSRAIPADRLEDATAAETKRPRGPRPGP 1076
Query: 884 ---------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKR 926
V WT+PLGLPVVQPYRK + V TS+Q + + +V ++
Sbjct: 1077 KSQVKSRIAKELMTSVVWTSPLGLPVVQPYRKPIKKQVMTSMQTVFISDPNAPSEVSPQK 1136
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
Q TAFPPNFVHSLD +HM++TAVAC +A +TFA VHDSYWTHA V+ M+ ++R+ F+ L
Sbjct: 1137 QATAFPPNFVHSLDATHMLLTAVACNQANITFASVHDSYWTHASTVEPMSEVIRDSFIHL 1196
Query: 987 YEMPIFENLLDSF 999
+ I L + F
Sbjct: 1197 HSNDIIGKLREEF 1209
>gi|118360511|ref|XP_001013489.1| DNA-dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89295256|gb|EAR93244.1| DNA-dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1410
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/867 (35%), Positives = 503/867 (58%), Gaps = 65/867 (7%)
Query: 190 RMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ 249
R L RQ+ +E E+ +A N++ ++ D+ + LA N+ + K + WF L I +EQ
Sbjct: 403 RNLFERQLILEQESQSQAVNKFLKVYEDLNKFGLAVNIGFAKRYIMNWFPNLCKVIKEEQ 462
Query: 250 ERCRMAKHK---VAYAPYFDQLPADMMAVITMHKLMGLLM-------TGGEHGRARVVQA 299
++C + + K YA Y +L A+ +A++++ +LM ++ E+ +V
Sbjct: 463 QQCLLGELKGERKYYATYLTKLSAERIAILSLTELMKQILRISNKFKESAENMENTIVDC 522
Query: 300 ACI---IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEG---------DESNTVTTEQEKL 347
+ + I +I + V + E+ +K N+ K K+D E +++ ++
Sbjct: 523 SIVSKAIFSSIGEAVNLQYIYEQEEKLNKEKEKKDLESLVEKINSNNTSNSSEEEVTQRA 582
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQD-----DFKPWG--QDARAKVGSRVIELLTQTAYIQS 400
+K + D K+ + + K ++ +++ G + + K+GS +I L+ +T I++
Sbjct: 583 KKYLADKTKEANQKIMESLYKKKNSTSKLNYQEIGIPKTIQLKIGSLLIYLMKETIQIRN 642
Query: 401 PADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYM- 459
+ + H L K++K GVI N + L + P+M
Sbjct: 643 EQN-----------FWIHLLVPSYKKSKNNDGYVGVININEDFIISLYEQSEKSESPFMH 691
Query: 460 -----PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
PM+ P W Y+ G ++ P+ +MR H + Q + + L ++ L+T+
Sbjct: 692 LERCLPMIYKPAPWQDYEIGGYYQRPTNLMRIHESPIQEKVLSYSD---LSKMYNILNTV 748
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLADL----VDRNDVPLPEKPETEDEAQLRKWQWKVR 570
T WR+N +V V+++IW GG ++ D D + + E + R Q ++
Sbjct: 749 SQTAWRINKKVFDVMEKIWEEGGGQGEIPRRFYDYKDYVYQYQLK---ECKNRDEQQRLM 805
Query: 571 NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
+E R+ HS R D +LK++VA+ ++ E Y+PHNVDFRGR YP+ P+LNH+G+D+ R
Sbjct: 806 KKIQEQRDMHSMRSDFQLKINVAKAFRNIEKIYFPHNVDFRGRIYPIPPHLNHMGADISR 865
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
G+LE++E + +GK+G +WLK+HL+NL G DKLS R+AF E+ +++ A PL+
Sbjct: 866 GLLEYSESKKIGKTGWYWLKVHLSNLL--GQDKLSFPERVAFAESQFENVKRWASDPLKH 923
Query: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
R W ++ ED +Q LA ++ EAL+ +PE +ISH+ VH DGSCNGLQHYAA+GRD GA
Sbjct: 924 REW-IQVEDAWQALATIFDVAEALKLENPEDYISHLHVHMDGSCNGLQHYAAIGRDKDGA 982
Query: 751 AAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
VNL+ +KP D+YS +A V + +DA D A + +A+ AK L + RK+VKQTVM
Sbjct: 983 MQVNLMNAQKPGDLYSHVARMVEQRVGKDANDDLAKY-NAI-AKKLSGNIKRKVVKQTVM 1040
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
TSVYGVT++GAR QI ++L+++ EE E + AS Y A+ TL + ++F +A I WL
Sbjct: 1041 TSVYGVTFVGARKQIYKQLRDKDFLTEE-EAYEASYYLAQTTLDCIKDLFSSAHYIKKWL 1099
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGR-HTVKTSLQILTLQRETEKVMVKR--Q 927
CA +IA+ + PV W TP+GLPVVQPYR G+ + T +Q + ++++++++ + + Q
Sbjct: 1100 INCAGLIANTSNPVSWITPMGLPVVQPYRSKGQLDVINTVIQKIAVEQDSDRLPINKSKQ 1159
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
R+AFPPN++HSLD +H+M TA+ C K G+ FA VHDSYWTHACD++EM++ILRE+FV+L+
Sbjct: 1160 RSAFPPNYIHSLDSTHLMYTALECIKRGMHFAAVHDSYWTHACDIEEMHKILREQFVKLH 1219
Query: 988 EMPIFENLLDSFQKSFPKLVFPPLPER 1014
P+ E+L SF++ +P + FP +P R
Sbjct: 1220 SQPLLEDLKASFERRYPNIEFPEIPNR 1246
>gi|444322297|ref|XP_004181804.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
gi|387514849|emb|CCH62285.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
Length = 1352
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 323/851 (37%), Positives = 471/851 (55%), Gaps = 81/851 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR- 253
RQ +ET + E A ++ MD + AP + W+ + I KE E+
Sbjct: 423 RQRVLETRSTEAAKERWKHDFMDAKSRGEAPFEKKLNVKLWEWYSQMLPLIKKEVEQANE 482
Query: 254 ------MAKHKVA-----YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
+ K K YAPY + + + M VIT+ +L+ L TGG R +A
Sbjct: 483 LLQDSLIDKRKAGGISSDYAPYLNLVDPEKMCVITILELLKLNSTGGVFEGMRTARAVIS 542
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
+G AIE E R + + +NE ++ V+T+ +K V K+ +
Sbjct: 543 VGKAIELEFRSEQLI-----RNEMHTFKN--------VSTKPHVFKKYVWSAKKRLR--- 586
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF-----PAFT 417
I K + + W Q ARA++GS +I L A + D + + PAF+
Sbjct: 587 DHNIEKSKIE---WPQAARAQIGSIMISTLLHVAKVNVRGH---DPKTNKYVYGELPAFS 640
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGA 475
H S + G+K GV++ + ++K L ER A + MPM+V P KW ++ G
Sbjct: 641 H-----SYQYHNGAK-IGVLKIHKSLIKQLNGERLATSVQPQQMPMIVKPRKWVSWNSGG 694
Query: 476 HFFLPSYVMRTHGAKQQRDTVKRTPKKQLEP-VFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+ + S ++RT + +Q +K ++ L P ++ L+ +G T W VN +V +VL +W+
Sbjct: 695 YHYSQSILIRTRDSPEQVAYLKAVSEENLIPTIYSGLNVIGLTGWTVNRKVFNVLSEVWN 754
Query: 535 CGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
G + D+ + + V LP P + ++R+W+ K + + + S RCD KL +
Sbjct: 755 TGKQFLDIPGIQDDMVVLPPLPSNAEPEEVREWKLKNKEIANKISSDRSVRCDSNYKLEI 814
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F +GR LG GL WLK+H
Sbjct: 815 ARAFLGEK-IYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGRRLGPQGLKWLKVH 873
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LANL+ G DK S + R+AF H++D+ DSA+ PL+G+ WW A+ P+Q LA C+ L E
Sbjct: 874 LANLF--GYDKASLDDRIAFANQHIEDLKDSAEHPLDGKGWWQSADKPWQALATCMELNE 931
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
A + +PE FISH PVHQDG+CNGLQHYAALG D GA VNLV KP DVY+ +A V
Sbjct: 932 AFKLENPEDFISHQPVHQDGTCNGLQHYAALGGDVEGAIQVNLVPSPKPQDVYNHVAKLV 991
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+A+ D A AK+L ++ RK+VKQTVMT+VYGVT+IGA QI ++L E+
Sbjct: 992 ------EARLDVAAKEGDETAKILQGKITRKVVKQTVMTNVYGVTFIGATRQIAKQLTEK 1045
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA-------------S 879
+ A +G Y AK A+ E F+ A I WLGEC+K I+ +
Sbjct: 1046 FDDKQLAFEYGG--YLAKHVFAAIRESFKGAHEIQDWLGECSKRISRAIRLDVDSKSFRN 1103
Query: 880 ENQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFP 932
N+P V WTTPLGLP+VQPYR + +KT+LQ + + V +RQ++ FP
Sbjct: 1104 GNKPDFMSSVIWTTPLGLPIVQPYRDESKKQIKTNLQTIFIADPLAVNPVNARRQKSGFP 1163
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD SHM+++A C + GL FA VHDSYWTHACDVD+MN +LRE+F++L+E+ +
Sbjct: 1164 PNFIHSLDASHMLLSATKCGEHGLDFASVHDSYWTHACDVDKMNYLLREEFIKLHEVDLI 1223
Query: 993 ENLLDSFQKSF 1003
E L F + +
Sbjct: 1224 ERLKTEFNQRY 1234
>gi|255719121|ref|XP_002555841.1| KLTH0G18744p [Lachancea thermotolerans]
gi|238937225|emb|CAR25404.1| KLTH0G18744p [Lachancea thermotolerans CBS 6340]
Length = 1289
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 325/896 (36%), Positives = 478/896 (53%), Gaps = 101/896 (11%)
Query: 156 ELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELL 215
E+ + +K EE+R R S + RQ ++E A + A +R
Sbjct: 328 EMFRNLKSEEER--------------RSFESALDEFNQDRQHQLENRATDAAKERWRH-- 371
Query: 216 MDMCEQKLAPNLPYMKSLFLG---WFEPLRDAIAKEQERCRMAKHKVA------------ 260
D E K +L K L + WF + + +E RC +K A
Sbjct: 372 -DFEEAKSRGDLSIQKKLNIKLWEWFNLMLPLVKEEVRRCAAVANKTAQDTSLSPQEKKQ 430
Query: 261 ------YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH 314
Y PY + + M VIT+ +L+ L TGG R +A +G AIE E R
Sbjct: 431 NKARQEYGPYLTLVDPEKMCVITILELLKLNSTGGIIEGMRTARAVISVGKAIEMEFRAE 490
Query: 315 KFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
L KNE+ +D V + + + V Q+ A R +K ++
Sbjct: 491 MLL-----KNESHVFKD--------VNKKSHEFKLMV------QRARATFRSIKIEESKV 531
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQ-SPADQLADAP-PDIFPAFTHALRTVSKETKGGSK 432
W Q+ARAK+GS +I +L A ++ D + + PAF+H + GSK
Sbjct: 532 LWPQEARAKIGSILISMLIHVAKVKVEGVDPVTNEKIKGEAPAFSHGY-----QYHNGSK 586
Query: 433 KYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAK 490
GV++ + ++ L ER + +PMLV P W ++ G +++ S ++R+ +
Sbjct: 587 -LGVLKIHRSLIHQLNGERLVAAVQPQLLPMLVKPRAWNSWNSGGYYYTQSTLIRSKDSP 645
Query: 491 QQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL--VDRND 547
+Q +K ++ V+ L+ LG T W VN ++ +V+ ++W+ G D+ +
Sbjct: 646 EQVAYLKAVSDAGAIDNVYRGLNVLGETPWTVNRKMFNVMSQVWNSGKPFLDIPGIQEKL 705
Query: 548 VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHN 607
P+ P D + R+W+ K + + E S RCD KL +AR E+ FY+PHN
Sbjct: 706 TLTPQPPRDADPSVHREWKLKNKELANEFSGNRSARCDANYKLEIARAFLGEK-FYFPHN 764
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
+DFRGRAYP+ P+ NHLG+D+ RG++ F G+ LG +GL WLK+HL+NL+ G DK E
Sbjct: 765 LDFRGRAYPLSPHFNHLGNDMSRGLMTFWHGKRLGSTGLRWLKVHLSNLF--GFDKAPLE 822
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIP 727
R+ F E+H+DDI DSA+ PL+G+ WW +A+ P+Q LA C+ L EAL+ S+P+ F+SH P
Sbjct: 823 DRVRFAEDHIDDIRDSAEHPLDGKCWWKEADKPWQALATCMELNEALKMSNPDDFVSHQP 882
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF 787
VHQDG+CNGLQHYAALG D GA VNLV ++P DVYS +A V+ +++ A
Sbjct: 883 VHQDGTCNGLQHYAALGGDIEGATQVNLVPSDRPQDVYSHVAKLVVARLEKAAANGDET- 941
Query: 788 PDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCY 847
A LL ++ RK+VKQTVMT+VYGVTYIGA QI ++L + + + S Y
Sbjct: 942 -----AALLKDKIKRKVVKQTVMTNVYGVTYIGATHQIDKQLSTLFNDHKRS--YELSKY 994
Query: 848 AAKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------NQP-----VRWTTP 889
K ++ E+F+ A I WLGECAK I+ N+P V WTTP
Sbjct: 995 LTKHVFASVRELFEGAHLIQDWLGECAKRISKSIRLDVDEKTLKNGNKPDFMSSVIWTTP 1054
Query: 890 LGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
LGLP+VQPYR+ G+ V T+LQ + + + +RQ+ FPPNF+HSLD SHM+++
Sbjct: 1055 LGLPIVQPYRENGKKQVATNLQTVFISDPFAINPINARRQKAGFPPNFIHSLDASHMLLS 1114
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
A C + GL FA VHDSYWTHACDVD MN +LRE+F++L+E+ + E L D F + +
Sbjct: 1115 AAKCGEKGLDFAAVHDSYWTHACDVDTMNVVLREQFIKLHEVDLIERLKDEFDERY 1170
>gi|46403038|gb|AAS92533.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/797 (38%), Positives = 449/797 (56%), Gaps = 68/797 (8%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDES-NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK-----P 375
+ K + + S + + +K+ ++ + K A R + DD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPA 407
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W + + VGS +++ L + A ++ A + ++ PAFTHA V KK
Sbjct: 408 WSRMIQLGVGSELVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYVR------GKK 461
Query: 434 YGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR + +
Sbjct: 462 LGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLE 521
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DRND 547
Q+ +K ++ LEPVF LD L +T WR+N RV V+ W+ G +AD+ D+
Sbjct: 522 QQKWLKAASEEGHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAH 581
Query: 548 VPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGFYY 604
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD FY
Sbjct: 582 YEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYL 639
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G DK
Sbjct: 640 PHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKA 697
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS SP + S
Sbjct: 698 SFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPSPSAYES 757
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 758 SLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKAGH 817
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 818 DI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAV 870
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 871 SSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPTRIQEAATNLTSTSRTGKVTS 930
Query: 886 -----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFP 932
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TAFP
Sbjct: 931 RAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFP 990
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+ +
Sbjct: 991 PNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQDLV 1050
Query: 993 ENLLDSFQKSFPKLVFP 1009
L + F + + P
Sbjct: 1051 GKLREDFLDRYGEYCIP 1067
>gi|223995603|ref|XP_002287475.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220976591|gb|EED94918.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 1217
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 329/992 (33%), Positives = 511/992 (51%), Gaps = 166/992 (16%)
Query: 186 SGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 245
+ KY+ L+ Q+++E E+ E+A + ++ +P ++ + W+ L +AI
Sbjct: 243 TDKYKELRRLQLQLEIESTEEAVMKCLSTWNSARDRSDHTTIPAIRKVVTSWYGSLTEAI 302
Query: 246 AKEQ---------------------------------ERCRMAKHKVAYAPYFDQLPADM 272
EQ ++ +A+ + Y P LP
Sbjct: 303 ELEQWLYLNGDNKTSSSSQLDTQSGEDGGESTNSNGLQKTDVARDRTIYGPLLCLLPPQK 362
Query: 273 MAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLE--KTKKKNETKNKE 330
A++ H + + GGE G ++VV A I A+E EV + + L +++K + N E
Sbjct: 363 TAILLAHTALSCSVAGGELG-SKVVSLAIYIAQALETEVNVSRALRVRASQRKWKMNNLE 421
Query: 331 DEEGDE------------------SNTVTTEQ-----EKLRKKVTDLIKKQKLPAVRRIV 367
DE GDE S+ +T ++ L++ + +L ++ +
Sbjct: 422 DE-GDEVDGVVQMSTKPPNGSDSLSDNITVDKWVYTATHLKRFLDELSGNGATSGDQKPL 480
Query: 368 KGQ---------------------------------------DDFKPWGQDARAKVGSRV 388
KGQ DF W + K+G+ +
Sbjct: 481 KGQGRLRPALVRKRCQDILLAEGFMGEGDDDGTTAPKRPISLTDFAEWDPVLKVKLGAAL 540
Query: 389 IELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLK--- 445
I LL + S + + +P PAF + S++ G K G + +P +LK
Sbjct: 541 IRLLLEHT---SFSKRRGSSPE---PAFFY-----SRKKTGEMKFNGFVTIHPELLKIAM 589
Query: 446 --GLERTARHMVIPYM------PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 497
L + + YM PM+VPP W D G + + + MRT K Q+D ++
Sbjct: 590 KEELSHDSSFISPRYMQNTRCQPMVVPPKDWKAVDDGGYETIKTEFMRTRHCKTQKDAIR 649
Query: 498 RTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE-- 555
L VFE L+ LG W++N VL + W G L D+ +++ +P P
Sbjct: 650 HA---DLTQVFEGLNVLGRIPWKINQNVLDAACKCWDDGIALGDIPSQDNHQVPPLPTPL 706
Query: 556 --------TEDEAQLRKWQWKVRN--------VKKENRERHSQRCDIELKLSVARKMKDE 599
+DE +++ +++ K++N + HS RC LKL+ A+K +D
Sbjct: 707 DYRDFNLLDDDEKKVQVDAFRIYKDAITKHFRFKQKNMDLHSLRCSAMLKLNQAKKFRDF 766
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
E ++P+NVDFRGRAYP+ P+L+ +GSDLCR +L FA + LG +GL+WLK+HLANL
Sbjct: 767 EEIFFPYNVDFRGRAYPVPPHLSIVGSDLCRALLMFAHPKPLGPNGLYWLKVHLANL--A 824
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
G +K+S +GR F +++++ I + D P G WW+ +DPFQ LA C + +A+ S P
Sbjct: 825 GANKMSFDGRAQFADDNMESIRAAVDNPFGGNDWWMGFDDPFQGLATCHEIVKAIDSGDP 884
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++ +PVH DGSCNGLQHYAALGRD +G AVNL ++P DVY G+ V+ + D
Sbjct: 885 ANYMCSLPVHMDGSCNGLQHYAALGRDKVGGKAVNLCIADEPQDVYIGVMHEVIRRVAED 944
Query: 780 AQR--------------DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
AQ + + A+L+ +DR +VK+TVMTSVYGVTYIGAR+QI
Sbjct: 945 AQEMLPFDETKADLTKAEKELMKKIKSARLVNGLIDRGVVKRTVMTSVYGVTYIGARNQI 1004
Query: 826 KRRLKER----GAPMEE--AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS 879
+++E+ G ++E AE+ A Y A +T+ +G++F AR M+WL CA++IA
Sbjct: 1005 SEKIEEKLEDKGYDIDEMEAEINMACGYLASLTMEVMGQLFTGARQTMNWLTACARLIAQ 1064
Query: 880 ENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQR--TAFPPNFVH 937
+ QPV + +P+G+PVVQPYR+ TV T LQ + L +++ + + RQR +AFPPN+VH
Sbjct: 1065 QGQPVAFVSPVGVPVVQPYRQKRPFTVVTLLQNVVLSNDSDVLPLHRQRQVSAFPPNYVH 1124
Query: 938 SLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD 997
SLD SHM++TA+ +K GL F+ VHDSYWTH CDV+EMN ILRE F++LY P+ E+L D
Sbjct: 1125 SLDSSHMLLTAIEMQKRGLHFSAVHDSYWTHPCDVEEMNDILRECFIDLYSQPLLEDLKD 1184
Query: 998 SFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
S++ +P + FP +P +G+ DL +V +PYFF
Sbjct: 1185 SWELRYPSITFPDVPTKGELDLNDVKSAPYFF 1216
>gi|403413111|emb|CCL99811.1| predicted protein [Fibroporia radiculosa]
Length = 1321
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/800 (38%), Positives = 444/800 (55%), Gaps = 74/800 (9%)
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHK 315
K +P+ L + +++I + +LM L TGG + +A +G A+E E HK
Sbjct: 428 KRSAGLSPFLSLLTPEKLSLIAIMELMHLQGTGGVADGMKTARALLAVGKAVELE---HK 484
Query: 316 FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
E KK N + + T R DL + + A R+ ++ +D+
Sbjct: 485 -AEMCKKSNLPIPTSSGRTSDHSFFT------RLGYRDL--QARRVAARKFMEDAEDWTT 535
Query: 376 -WGQDARAKVGSRVIELLTQTAYIQSPA--DQLADAPPDIFPAFTHALRTVSKETKGGSK 432
W Q R KVGS +++ L A + + +A + PAF H+ +
Sbjct: 536 DWTQVVRVKVGSFLVDALMDVATVMRTGVDKRTGEAISEEQPAFFHSYEYLR------GY 589
Query: 433 KYGVIECNPLVLKGLER-TARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAK 490
K GVI+ NPL+ + + + + R + P ++PMLV P W +D+G + + ++VMR ++
Sbjct: 590 KLGVIKLNPLISEKMAKESIRETLHPRHLPMLVKPKPWLSHDQGGYLYNKTWVMRFKESQ 649
Query: 491 QQRDTVKRTPK-KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DV 548
+Q+ ++ LE ++ +LD LGNT W++N R+ ++ +W+ G R + D
Sbjct: 650 EQQSYLRHASSLGNLELIYASLDVLGNTPWKINRRIFDIVLEVWNSGTRWCKIPPAAFDA 709
Query: 549 PLPEKPETEDEAQLRKWQWKVRNVKKE--NRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
P PEKPE D K + R + HS RC + K+ +AR + Y+PH
Sbjct: 710 PEPEKPENFDTDPRAKMIYLTRQKQYALGRANNHSDRCSVNYKIEIARAFLGDT-IYFPH 768
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
NVDFRGRAYP+ P+L+H+G DL RG+L F E + LG+ GL WLKIHLANLY G DK +
Sbjct: 769 NVDFRGRAYPLPPHLSHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GYDKANF 826
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
+ R++F +HLDDIFDSAD PLEG++WW KA+DP+QCLA CI L AL+S P T+ +
Sbjct: 827 DERVSFVHDHLDDIFDSADNPLEGKKWWTKADDPWQCLATCIELKAALQSPDPHTYECAL 886
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
PVHQDG+CNGLQHYAALG D GA VNL ++P+DVY+ +A V ++ D + D
Sbjct: 887 PVHQDGTCNGLQHYAALGGDAQGARQVNLDVTDRPSDVYTFVAEMVEKAMEEDVKLDHKY 946
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
AK+L ++ RK+VKQTVMT+VYGVT+IGAR+QI+++LK+RG E E + A+
Sbjct: 947 ------AKMLTGKISRKVVKQTVMTTVYGVTFIGAREQIEKQLKDRGDIAAE-ECWLAAS 999
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR--------------------- 885
Y AK L +G++F+ A+ I +WL CA++IA P R
Sbjct: 1000 YVAKKVLLCIGDLFKGAKDIQTWLNSCARLIAKSIPPDRLDAATDVERTFGTGRKMVKST 1059
Query: 886 --------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRT 929
WTTPLGLP+VQPYR R + TSLQ + + V +Q +
Sbjct: 1060 EATRLKKEQMTSVVWTTPLGLPIVQPYRATRRKQIITSLQTVFISDPNSPTSVNASKQAS 1119
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
AFPPNF+HSLD +HMM+TA+ C+ G+TFA VHDSYWTH +D+M+ I+R+ F+ L+
Sbjct: 1120 AFPPNFIHSLDATHMMLTALECKTQGVTFASVHDSYWTHPSSIDQMSTIIRDTFIALHSS 1179
Query: 990 PIFENLLDSFQKSFPKLVFP 1009
+ L D F + + P
Sbjct: 1180 DVLGKLGDEFLQRYKGYKIP 1199
>gi|334362790|gb|AEG78585.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/797 (38%), Positives = 449/797 (56%), Gaps = 68/797 (8%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDES-NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK-----P 375
+ K + + S + + +K+ ++ + K A R + DD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPA 407
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W + + VGS +++ L + A ++ A + ++ PAFTHA V KK
Sbjct: 408 WSRMIQLGVGSELVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYVR------GKK 461
Query: 434 YGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR + +
Sbjct: 462 LGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLE 521
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DRND 547
Q+ +K ++ LEPVF LD L +T WR+N RV V+ W+ G +AD+ D+
Sbjct: 522 QQKWLKAASEEGHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAH 581
Query: 548 VPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGFYY 604
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD FY
Sbjct: 582 YEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYL 639
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G DK
Sbjct: 640 PHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKA 697
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS +P + S
Sbjct: 698 SFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYES 757
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 758 SLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKAGH 817
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 818 DI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAV 870
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 871 SSYIAKTVLNCIGDLFSGAKAIMDWLSTSARLISRSIPPTRIQEAATNLTSTSRTGKVTS 930
Query: 886 -----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFP 932
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TAFP
Sbjct: 931 RAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFP 990
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+ +
Sbjct: 991 PNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQDLV 1050
Query: 993 ENLLDSFQKSFPKLVFP 1009
L + F + + P
Sbjct: 1051 GKLREDFLDRYGEYYIP 1067
>gi|334362824|gb|AEG78618.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/797 (38%), Positives = 449/797 (56%), Gaps = 68/797 (8%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDES-NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK-----P 375
+ K + + S + + +K+ ++ + K A R + DD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPA 407
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W + + VGS +++ L + A ++ A + ++ PAFTHA V KK
Sbjct: 408 WSRMIQLGVGSELVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYVR------GKK 461
Query: 434 YGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR + +
Sbjct: 462 LGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLE 521
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DRND 547
Q+ +K ++ LEPVF LD L +T WR+N RV V+ W+ G +AD+ D+
Sbjct: 522 QQKWLKAASEEGHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAH 581
Query: 548 VPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGFYY 604
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD FY
Sbjct: 582 YEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYL 639
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G DK
Sbjct: 640 PHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKA 697
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS +P + S
Sbjct: 698 SFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYES 757
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 758 SLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKAGH 817
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 818 DI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAV 870
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 871 SSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPTRIQEAATNLTSTSRTGKVTS 930
Query: 886 -----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFP 932
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TAFP
Sbjct: 931 RAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFP 990
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+ +
Sbjct: 991 PNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDVIRDTFVELHSQDLV 1050
Query: 993 ENLLDSFQKSFPKLVFP 1009
L + F + + P
Sbjct: 1051 GKLREDFLDRYGEYYIP 1067
>gi|25777802|gb|AAN75608.1| RPO41 [Cryptococcus neoformans var. neoformans]
Length = 1202
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/799 (38%), Positives = 448/799 (56%), Gaps = 72/799 (9%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDESNTVTT-------EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
+ K + + S + EQ K+V + LP + QD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDM--QDIWT 405
Query: 375 P-WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGS 431
P W + + VGS +++ L + A ++ A + ++ PAFTHA V
Sbjct: 406 PAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYVR------G 459
Query: 432 KKYGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
KK GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR +
Sbjct: 460 KKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKES 519
Query: 490 KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DR 545
+Q+ +K ++ LEPVF LD L +T WRVN RV V+ W+ G +AD+ D+
Sbjct: 520 LEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDK 579
Query: 546 NDVPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGF 602
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD F
Sbjct: 580 AHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--F 637
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
Y PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G D
Sbjct: 638 YLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGNQKPLGETGLKWLQIHLANVY--GYD 695
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
K S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS +P +
Sbjct: 696 KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAY 755
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
S +PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 756 ESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKA 815
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 816 GHDI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIF 868
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR----------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 869 AVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPTRVQEAATNLTNTSRTGKV 928
Query: 886 -------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTA 930
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TA
Sbjct: 929 TSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATA 988
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+
Sbjct: 989 FPPNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQD 1048
Query: 991 IFENLLDSFQKSFPKLVFP 1009
+ L + F + + P
Sbjct: 1049 LVGKLREDFLDRYGEYCIP 1067
>gi|58266658|ref|XP_570485.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134110360|ref|XP_776007.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258675|gb|EAL21360.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226718|gb|AAW43178.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1202
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/799 (38%), Positives = 448/799 (56%), Gaps = 72/799 (9%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDESNTVTT-------EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
+ K + + S + EQ K+V + LP + QD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDM--QDIWT 405
Query: 375 P-WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGS 431
P W + + VGS +++ L + A ++ A + ++ PAFTHA V
Sbjct: 406 PAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYVR------G 459
Query: 432 KKYGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
KK GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR +
Sbjct: 460 KKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKES 519
Query: 490 KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DR 545
+Q+ +K ++ LEPVF LD L +T WRVN RV V+ W+ G +AD+ D+
Sbjct: 520 LEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDK 579
Query: 546 NDVPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGF 602
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD F
Sbjct: 580 AHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--F 637
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
Y PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G D
Sbjct: 638 YLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYD 695
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
K S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS +P +
Sbjct: 696 KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAY 755
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
S +PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 756 ESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKA 815
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 816 GHDI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIF 868
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR----------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 869 AVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPARVQEAATNLTNTSRTGKV 928
Query: 886 -------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTA 930
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TA
Sbjct: 929 TSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATA 988
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+
Sbjct: 989 FPPNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQD 1048
Query: 991 IFENLLDSFQKSFPKLVFP 1009
+ L + F + + P
Sbjct: 1049 LVGKLREDFLDRYGEYCIP 1067
>gi|340508072|gb|EGR33869.1| hypothetical protein IMG5_034000 [Ichthyophthirius multifiliis]
Length = 926
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/859 (35%), Positives = 492/859 (57%), Gaps = 61/859 (7%)
Query: 190 RMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ 249
R L RQ+ +E + ++A N++ ++ + L N+ + K + WF L I +EQ
Sbjct: 30 RNLYERQLLLEQSSQDQAVNKFFQVYESLSNFGLNVNMGFAKQHIVQWFPNLCKVIREEQ 89
Query: 250 ERCRMAKHK---VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA-------RVVQA 299
++CR+ K YA + Q+ A+ +AVI++ +LM ++ E + RV+ +
Sbjct: 90 QQCRLGTLKGERKYYAQFLAQIEAEKLAVISLTELMKCILKLSEKEKKERLDQKDRVIVS 149
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+ I + V + ++ + + K K+D + T Q +L +
Sbjct: 150 KLLFAQ-IGKSVNVQYIFQQEEALKKEKEKKDLDELVQQMKTENQNQLLNNI-------- 200
Query: 360 LPAVRRIVKGQDDFKPWG--QDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFT 417
+ K Q +++ G ++ + K+GS ++ ++ + I++ + + P++
Sbjct: 201 --YTNKSNKIQINYEQLGIPKETQYKIGSLLVYVMKECIKIRNEDNFWVSL---LVPSYI 255
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYM------PMLVPPVKWTGY 471
SK +G GVI N L + + +M PM+ PP KW Y
Sbjct: 256 K-----SKRNQGFV---GVINVNQYFLHSMNQETDKTDSLFMHLDRSLPMIYPPAKWQDY 307
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
+ G ++ P+++MR ++ Q ++ T L V+E L+ +G T WR+N RVL+V+++
Sbjct: 308 EMGGYYLRPTHLMRFEDSQLQEKSLFNT---DLSKVYEILNIIGKTPWRINKRVLNVMEK 364
Query: 532 IWSCGGRLADLVDR-----NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
IW GG + ++ + N + + E +D + K K+ ++ R+ HS R D
Sbjct: 365 IWEEGGDIGEIPKKYYDYTNYIHQYQVDECKDYKEKAKLMRKI----QQQRDIHSNRSDF 420
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
LKL VAR ++ + Y+PHNVDFRGR YP+ P+LNH+G+D CRG+LEF+E + +GK+G
Sbjct: 421 LLKLKVARAFQNLDRIYFPHNVDFRGRLYPIPPHLNHIGADRCRGLLEFSESKRIGKTGW 480
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
+WLK+H +NL GVDKLS + R+A+TE+ ++I A P++ R W L+ ED +Q L+
Sbjct: 481 YWLKVHTSNLL--GVDKLSFDQRVAYTESQFENIKRWASDPIKNREW-LQVEDCWQALSA 537
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
++EAL+ +PE ISH+ VH DGSCNGLQHYAA+GRD GA VNL KP D+YS
Sbjct: 538 IFEVSEALQLENPEDHISHLHVHMDGSCNGLQHYAAIGRDKYGAEQVNLRDSIKPGDLYS 597
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A+ V I D + + + + AK L Q+ RK+VKQTVMTSVYGVT++GAR QI
Sbjct: 598 HVASMVEQKIDEDCKNELS--ENYEIAKKLQGQIKRKIVKQTVMTSVYGVTFVGARQQIL 655
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRW 886
R+LK+R M E + + AS Y A VTL + +F A I WL CA +I++ PV W
Sbjct: 656 RQLKDRDF-MNEEDNYKASYYLATVTLLQIKNLFTQAHYIKKWLISCAALISATGNPVSW 714
Query: 887 TTPLGLPVVQPYRKLGR-HTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSH 943
T +GLPVVQPYR + + T +Q +T++ +++ + ++QR+AFPPN++HSLD +H
Sbjct: 715 ITDMGLPVVQPYRNQSTLNVINTVIQKITIEANHDELPINKQKQRSAFPPNYIHSLDSTH 774
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
+M TA+ C K G+ FA VHDSYWTHA DV+ ++ +LR++FV+L+ P+ E+L +SFQ+ F
Sbjct: 775 LMYTAIECNKLGIYFAAVHDSYWTHAADVEILHDVLRKQFVKLHSQPLLEDLRNSFQRRF 834
Query: 1004 PKLVFPPLPERGDFDLREV 1022
P + FP +P+RG+ +L +V
Sbjct: 835 PTIDFPEIPKRGELNLEDV 853
>gi|58266656|ref|XP_570484.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134110362|ref|XP_776008.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|25956307|gb|AAN75721.1| RPO41 [Cryptococcus neoformans var. neoformans]
gi|50258676|gb|EAL21361.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226717|gb|AAW43177.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1180
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/799 (38%), Positives = 448/799 (56%), Gaps = 72/799 (9%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDESNTVTT-------EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
+ K + + S + EQ K+V + LP + QD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDM--QDIWT 405
Query: 375 P-WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGS 431
P W + + VGS +++ L + A ++ A + ++ PAFTHA V
Sbjct: 406 PAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYVR------G 459
Query: 432 KKYGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
KK GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR +
Sbjct: 460 KKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKES 519
Query: 490 KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DR 545
+Q+ +K ++ LEPVF LD L +T WRVN RV V+ W+ G +AD+ D+
Sbjct: 520 LEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDK 579
Query: 546 NDVPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGF 602
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD F
Sbjct: 580 AHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--F 637
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
Y PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G D
Sbjct: 638 YLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYD 695
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
K S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS +P +
Sbjct: 696 KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAY 755
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
S +PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 756 ESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKA 815
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 816 GHDI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIF 868
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR----------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 869 AVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPARVQEAATNLTNTSRTGKV 928
Query: 886 -------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTA 930
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TA
Sbjct: 929 TSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATA 988
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+
Sbjct: 989 FPPNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQD 1048
Query: 991 IFENLLDSFQKSFPKLVFP 1009
+ L + F + + P
Sbjct: 1049 LVGKLREDFLDRYGEYCIP 1067
>gi|54112152|gb|AAV28755.1| RPO41p [Cryptococcus gattii]
Length = 1180
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/797 (38%), Positives = 448/797 (56%), Gaps = 68/797 (8%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDES-NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK-----P 375
+ K + + S + + +K+ ++ + K A R + DD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPA 407
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W + + VGS +++ L + A ++ A + ++ PAFTHA V KK
Sbjct: 408 WSRMIQLGVGSELVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYVR------GKK 461
Query: 434 YGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR + +
Sbjct: 462 LGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLE 521
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DRND 547
Q+ +K ++ LEPVF LD L +T WR+N RV V+ W+ G +AD+ D+
Sbjct: 522 QQKWLKAASEEGHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAH 581
Query: 548 VPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGFYY 604
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD FY
Sbjct: 582 YEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYL 639
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G DK
Sbjct: 640 PHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKA 697
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS P + S
Sbjct: 698 SFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLAACFELAAALRSPDPSAYES 757
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 758 SLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKAGH 817
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 818 DI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAV 870
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 871 SSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPTRIQEAATNLTSTSRTGKVTS 930
Query: 886 -----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFP 932
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TAFP
Sbjct: 931 RAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFP 990
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+ +
Sbjct: 991 PNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQDLV 1050
Query: 993 ENLLDSFQKSFPKLVFP 1009
L + F + + P
Sbjct: 1051 GKLREDFLDRYGEYYIP 1067
>gi|56566235|gb|AAN75149.2| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1202
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 306/797 (38%), Positives = 447/797 (56%), Gaps = 68/797 (8%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDES-NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK-----P 375
+ K + + S + + +K+ ++ + K R + DD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGRILPPNHDDMQDIWTPA 407
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W + + VGS +++ L + A ++ A + ++ PAFTHA V KK
Sbjct: 408 WSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYVR------GKK 461
Query: 434 YGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR + +
Sbjct: 462 LGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLE 521
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DRND 547
Q+ +K ++ LEPVF LD L +T WRVN RV V+ W+ G +AD+ D+
Sbjct: 522 QQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAH 581
Query: 548 VPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGFYY 604
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD FY
Sbjct: 582 YEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--FYL 639
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G DK
Sbjct: 640 PHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKA 697
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS P + S
Sbjct: 698 SFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPIPSAYES 757
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+YSG+ V +++ D +
Sbjct: 758 SLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYSGVVDIVNKVVEEDKKAGH 817
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 818 DI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAV 870
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 871 SSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPTRVQEAATNLTSTSRTGKITS 930
Query: 886 -----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFP 932
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TAFP
Sbjct: 931 RAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFP 990
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+ +
Sbjct: 991 PNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQDLV 1050
Query: 993 ENLLDSFQKSFPKLVFP 1009
L + F + + P
Sbjct: 1051 GKLREDFLDRYGEYCIP 1067
>gi|358055118|dbj|GAA98887.1| hypothetical protein E5Q_05575 [Mixia osmundae IAM 14324]
Length = 1375
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 349/1025 (34%), Positives = 515/1025 (50%), Gaps = 114/1025 (11%)
Query: 60 LKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFG 119
+K + YS I D + R K ++ ++E E+ + E
Sbjct: 268 MKIALASDYSLSDILADPLFRLKASASLGNVTAASVYEACLSAATELQDTE--------- 318
Query: 120 VLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVE-EIQELLQEMKKEEQREGENGSGRNRR 178
+L D+ PR V A+ S + E ELL ++ Q G+ R
Sbjct: 319 IL--DHLQDPRALEPVNSAMDSGTISETSEQARMPPAELLHPVRPYAQTTGDELESHFRI 376
Query: 179 RVAR----GMGSGKYRMLKM--RQVKIETEAWEKAANEY---RELLMDMCEQKLAPNLPY 229
V R + S Y + + RQ ++E A + A ++ RE + Q+++
Sbjct: 377 DVLREQLKAVESEAYHSIDLYERQRQLEDSAMQAAVVQFQTEREKMNTEVAQRVSMQQRS 436
Query: 230 MKSLFLGWFEPLRDAIAKEQERCRM--------------------AKHKVAYAPYFDQLP 269
++SL GW E L + + QE+ R+ A + A YF LP
Sbjct: 437 LQSLMTGWIEELTVVLTRVQEQMRLLIDSDAVTTKETVIEGCKIFATDRAADDIYFLLLP 496
Query: 270 ADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNK 329
D +A +T+ L+ G +V + IG A+E E K E + +
Sbjct: 497 PDKLAYLTVSVLLSHNTPGA--AMQKVTRCVMAIGKAVEVEHYAMKLQESHRLELADALH 554
Query: 330 EDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVI 389
E + +N VT + ++ ++ ++ ++ + R + W RA++G+ +
Sbjct: 555 AVREAEAANGVT--ESRVVARIWRDVRARQGDSSREVF--------WSHQTRARIGAMCL 604
Query: 390 ELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLER 449
L +TA IQ A +I PAF + +K G+I+ N V + L++
Sbjct: 605 HFLCETAKIQRSAVIDGQEIIEIQPAFVQTYQF------SAGQKIGIIKFNAAVTERLDK 658
Query: 450 TARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEP 506
+ + Y+PMLVPP WT ++KGA+ P V+R + +Q +K+ QL+
Sbjct: 659 DSMLSTLTPRYLPMLVPPRPWTAHNKGAYLMHPVSVLRIKDSMEQTAYLKQASDSGQLDE 718
Query: 507 VFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL-----ADLVDRNDVPLPEKPETEDEAQ 561
F +LD LG+T W VN V V+ W+ G + AD ++ P P Q
Sbjct: 719 AFASLDYLGSTAWNVNRDVFGVIASAWNSGLTIGGIPVADPLNAIKDPEPPAGGFTSPRQ 778
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
+ +V+ + + R+ +S RCD+ KL +AR +E FY+PHN+DFRGRAYP+ P L
Sbjct: 779 QDTHRAEVKAAEMQRRQHYSIRCDLNYKLEIARAYLNER-FYFPHNMDFRGRAYPIPPNL 837
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
+H+G DLCRG+L FAE + LG +GL WL +HLAN++ G DK S R F ++HL DIF
Sbjct: 838 SHIGDDLCRGLLTFAERKRLGATGLRWLHVHLANMF--GFDKASLAAREQFAKDHLTDIF 895
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
DSADKPL+G RWWLKAE+P+QCLA C L++ALRS PE + S +PV QDGSCNGLQHYA
Sbjct: 896 DSADKPLDGARWWLKAEEPWQCLATCFELSKALRSPVPEDYRSSLPVQQDGSCNGLQHYA 955
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVD 801
ALG D GA VNL+A + P+DVY+G+ V+ +++DA + A L ++
Sbjct: 956 ALGGDMAGAGQVNLIAGDAPSDVYTGVCNLVIGAVEQDAANKNEL------ALHLKGKIT 1009
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQ 861
RK++KQTVMT+VYGVTYIGA QI+R+LK+RG E + Y + TL ++G +F
Sbjct: 1010 RKVIKQTVMTTVYGVTYIGASRQIERQLKDRGDVDAEVR-HKCALYLTEKTLQSIGTLFA 1068
Query: 862 AARGIMSWLGECAKIIA-----------------SENQPVR------------------W 886
A I WL C ++I+ SE ++ W
Sbjct: 1069 GAAAIQLWLTTCGRLISKSIPGDRHELVKATQSKSEQNKLKKKQSSKDMLAREQMTTVVW 1128
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHM 944
TTP+GLPV QPYRK R VKT +Q + + + +V ++Q +AFPPNF+HSLD SH+
Sbjct: 1129 TTPIGLPVAQPYRKQQRKQVKTVVQTVFISDPQTPTQVDSRQQTSAFPPNFIHSLDASHL 1188
Query: 945 MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP 1004
M+TA C++ GLTFA VHDS+WTHA DVD M LR FV+L+ I E+L F +
Sbjct: 1189 MLTAGRCKRRGLTFASVHDSFWTHAADVDVMATELRAAFVDLHAQDILESLRREFLLRYE 1248
Query: 1005 KLVFP 1009
V P
Sbjct: 1249 GHVVP 1253
>gi|410730293|ref|XP_003671326.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
gi|401780144|emb|CCD26083.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
Length = 1354
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 313/852 (36%), Positives = 468/852 (54%), Gaps = 80/852 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E+ A + A ++ D E K +L KSL W+E + + KE E+
Sbjct: 429 RQRALESRAADAAKERWKH---DFEEAKERGDLSIRKSLNVKLWNWYELMLPILKKEIEK 485
Query: 252 CRMAKHKVA-------YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
++ K + + PY + + M VIT+ +L+ L TGG R +A +G
Sbjct: 486 AQLKLEKQSKIFKSQDFDPYLLLVNPEKMCVITILELLKLNSTGGVIEGMRTARAVISVG 545
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR 364
AIE E R + L KNE+ +D N + E +K+ ++ + +L +
Sbjct: 546 KAIEMEFRSEQLL-----KNESSIFKD-----INKKSAEFKKIVQRAKSNFRSTQLEKSK 595
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA-DQLADAPPDIF---PAFTHAL 420
W Q RA++GS +I L A I D + ++ PAF H+
Sbjct: 596 IF---------WPQAVRAQIGSILISTLIHVAKIDVEGFDPITKTK--VYGEAPAFAHSY 644
Query: 421 RTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFF 478
+ + K GVI+ + ++ L ER + +PMLV P +W + G +F+
Sbjct: 645 QYCN------GMKLGVIKIHKALINQLNGERLVASVQPQLLPMLVEPREWKNWRSGGYFY 698
Query: 479 LPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
S ++R+ + +Q +K K+ ++ V+ L+ LG T W VN R+ ++ ++W+ G
Sbjct: 699 TQSTLIRSKESPEQLAYLKAVSDKEAIDDVYNGLNALGKTAWTVNKRLFEIISKVWNEGI 758
Query: 538 RLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
D+ + + +P P D + LR+W+ + + + + + S RCD KL +AR
Sbjct: 759 EFLDIPQIQYDMQLIPPPPRNSDPSILREWKLQNKEIANKISKNRSIRCDTNYKLEIARA 818
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
E+ FY+PHN+DFRGRAYP+ P+ NHLG+DL RG+L F +G+ LG GL WLKIH AN
Sbjct: 819 FLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDLSRGLLIFWKGKKLGPDGLSWLKIHCAN 877
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
LY G+DK+ R+ F E+H++D+ D+A+ PL+G+ WW KA+ P+Q LA CI L EAL+
Sbjct: 878 LY--GMDKIPFTERIQFIEDHIEDVKDTAENPLDGKGWWKKADKPWQLLATCIELNEALK 935
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
+PE FISH PVHQDG+CNGLQHYAALG D GA VNL+ E+P DVY +A V
Sbjct: 936 LDNPEDFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLIPNERPQDVYRHVANLV--- 992
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
+ + AV +A+LL+ ++ RK+VKQ VMT+VYGVTY+GA QI+++L E
Sbjct: 993 ---KKRLEKAVLAGDKKAELLVDKITRKVVKQPVMTNVYGVTYVGATFQIEKQLSEYFP- 1048
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------NQ 882
+ + F S Y + E+F +A I WLGECAK I N+
Sbjct: 1049 -DRKQCFDLSKYLTFHVFATIRELFHSAHLIQDWLGECAKRITKSIRLDVDGKSFKNGNK 1107
Query: 883 P-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNF 935
P V WTTPLGLP+VQPYR+ + V T+LQ + + V +RQ+ FPPNF
Sbjct: 1108 PDFMSSVIWTTPLGLPIVQPYREATKKQVMTNLQTIFISDPFAINGVNARRQKAGFPPNF 1167
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+HSLD SHM+++A+ C++ GL FA VHDSYWTHACDV++M+ LR++F+EL+++ + E L
Sbjct: 1168 IHSLDASHMLLSAIKCKENGLEFASVHDSYWTHACDVNKMSVYLRDEFIELHKVDLIERL 1227
Query: 996 LDSFQKSFPKLV 1007
D F + + V
Sbjct: 1228 KDEFDERYKDYV 1239
>gi|25573208|gb|AAN75176.1| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1180
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 308/799 (38%), Positives = 447/799 (55%), Gaps = 72/799 (9%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDESNTVTT-------EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
+ K + + S + EQ K+V LP + QD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGGILPPNHDDM--QDIWT 405
Query: 375 P-WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGS 431
P W + + VGS +++ L + A ++ A + ++ PAFTHA V
Sbjct: 406 PAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYVR------G 459
Query: 432 KKYGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
KK GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR +
Sbjct: 460 KKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKES 519
Query: 490 KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DR 545
+Q+ +K ++ LEPVF LD L +T WRVN RV V+ W+ G +AD+ D+
Sbjct: 520 LEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDK 579
Query: 546 NDVPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGF 602
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD F
Sbjct: 580 AHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--F 637
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
Y PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G D
Sbjct: 638 YLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYD 695
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
K S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS +P +
Sbjct: 696 KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAY 755
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
S +PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 756 ESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKA 815
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 816 GHDI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIF 868
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR----------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 869 AVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPTRVQEAATNLTSTSRTGKI 928
Query: 886 -------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTA 930
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TA
Sbjct: 929 TSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATA 988
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD +HM++TA+ C++ + FA VHDSYWTHA V++M+ ++R+ FVEL+
Sbjct: 989 FPPNFIHSLDATHMLLTALKCKQNNVAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQD 1048
Query: 991 IFENLLDSFQKSFPKLVFP 1009
+ L + F + + P
Sbjct: 1049 LVGKLREDFLDRYGEYCIP 1067
>gi|405119910|gb|AFR94681.1| mitochondrial-related RNA polymerase [Cryptococcus neoformans var.
grubii H99]
Length = 1324
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 308/799 (38%), Positives = 447/799 (55%), Gaps = 72/799 (9%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 410 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 469
Query: 322 KKNETKNKEDEEGDESNTVTT-------EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
+ K + + S + EQ K+V LP + QD +
Sbjct: 470 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGGILPPNHDDM--QDIWT 527
Query: 375 P-WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGS 431
P W + + VGS +++ L + A ++ A + ++ PAFTHA V
Sbjct: 528 PAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYVR------G 581
Query: 432 KKYGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
KK GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR +
Sbjct: 582 KKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKES 641
Query: 490 KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DR 545
+Q+ +K ++ LEPVF LD L +T WRVN RV V+ W+ G +AD+ D+
Sbjct: 642 LEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDK 701
Query: 546 NDVPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGF 602
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD F
Sbjct: 702 AHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--F 759
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
Y PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G D
Sbjct: 760 YLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYD 817
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
K S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS +P +
Sbjct: 818 KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAY 877
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
S +PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 878 ESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKA 937
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 938 GHDI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIF 990
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR----------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 991 AVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPTRVQEAATNLTSTSRTGKI 1050
Query: 886 -------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTA 930
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TA
Sbjct: 1051 TSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATA 1110
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD +HM++TA+ C++ + FA VHDSYWTHA V++M+ ++R+ FVEL+
Sbjct: 1111 FPPNFIHSLDATHMLLTALKCKQNNVAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQD 1170
Query: 991 IFENLLDSFQKSFPKLVFP 1009
+ L + F + + P
Sbjct: 1171 LVGKLREDFLDRYGEYCIP 1189
>gi|321262647|ref|XP_003196042.1| RPO41p [Cryptococcus gattii WM276]
gi|54112187|gb|AAV28789.1| RPO41p [Cryptococcus gattii]
gi|317462517|gb|ADV24255.1| RPO41p [Cryptococcus gattii WM276]
Length = 1180
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 303/797 (38%), Positives = 448/797 (56%), Gaps = 68/797 (8%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R K +
Sbjct: 288 YLSLLPVDKLALITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVD 347
Query: 322 KKNETKNKEDEEGDES-NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK-----P 375
+ K + + S + + +K+ ++ + K A R + DD +
Sbjct: 348 SYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPA 407
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W + + VGS +++ L + ++ A + ++ PAFTHA V KK
Sbjct: 408 WSRMIQLGVGSELVDALLKVTKVERTARDRNTGEIVMELQPAFTHAYEYVR------GKK 461
Query: 434 YGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
GVI+ NP+V L + +VI ++PMLV P WT ++KG + VMR + +
Sbjct: 462 LGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLE 521
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DRND 547
Q+ +K ++ LEPVF LD L +T W++N RV V+ W+ G +AD+ D+
Sbjct: 522 QQKWLKAASEEGHLEPVFHGLDVLSSTPWQINRRVFDVVLESWNKGEPIADIPPSEDKAH 581
Query: 548 VPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARK-MKDEEGFYY 604
PEKP++ D+ + Q+ K + V + R+ H++RC + +AR +KD FY
Sbjct: 582 YEFPEKPDSSDQDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYL 639
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL+IHLAN+Y G DK
Sbjct: 640 PHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKA 697
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S R F + H DIFDSAD PL+G+RWWLKAEDP+QCLA C L ALRS +P + S
Sbjct: 698 SFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYES 757
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V +++ D +
Sbjct: 758 SLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKKAGH 817
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
+ A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG +E +F
Sbjct: 818 DI------ALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFVV 870
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------------------- 885
S Y AK L +G++F A+ IM WL A++I+ P R
Sbjct: 871 SSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSIPPTRIQEAATNLTSTSRTGKVTS 930
Query: 886 -----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFP 932
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TAFP
Sbjct: 931 RAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFP 990
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HM++TA+ C++ L FA VHDSYWTHA V++M+ ++R+ FVEL+ +
Sbjct: 991 PNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWTHAATVEKMSDLIRDTFVELHSQDLV 1050
Query: 993 ENLLDSFQKSFPKLVFP 1009
L + F + + P
Sbjct: 1051 GKLREDFLDRYGEYCIP 1067
>gi|219127813|ref|XP_002184122.1| polymerase dna-directed RNA polymerase [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217404353|gb|EEC44300.1| polymerase dna-directed RNA polymerase [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 576
Score = 534 bits (1375), Expect = e-148, Method: Compositional matrix adjust.
Identities = 258/575 (44%), Positives = 374/575 (65%), Gaps = 23/575 (4%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKW 519
PM+VPP W+ D+G + L + ++R HG Q++ ++ L VF+ L+ LG W
Sbjct: 19 PMIVPPKPWSRPDEGGYKMLRTELLRYHGCNMQKEVLQNV---DLSIVFDGLNALGRVPW 75
Query: 520 RVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP-ETEDEAQLRKWQWKVRNVKKENRE 578
R+N RVL+V R W L D+ ++D PLPE+P + + Q W+ E+ +
Sbjct: 76 RINQRVLTVAQRCWDNNIPLGDIPSKDDNPLPEEPLHPKRQEQF----WEPETPGYESYD 131
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
S RC LKL A K K+ E ++P+N+DFRGRAYP+ P+L+++GSDLCRG+L+FAE
Sbjct: 132 LRSLRCSAMLKLDQAEKFKEFEEIFFPYNMDFRGRAYPVPPHLSNVGSDLCRGVLKFAEA 191
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAE 698
+ LG GL+WLK+HLAN G DK+S + R+ F +++L+ + SA+ P G RWW+ E
Sbjct: 192 KPLGPRGLYWLKVHLANF--AGKDKMSFDDRVKFVDDNLEQVRLSAEDPFAGERWWMSLE 249
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
DPFQ LA C+ + +A+ +PE+F+ +PVH DGSCNGLQHYAALGRD++G AVNL A
Sbjct: 250 DPFQGLATCLEIIDAIDCGNPESFLCSLPVHMDGSCNGLQHYAALGRDSVGGKAVNLCAY 309
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
++P DVY G+ V+ + R AKL+ +DR +VK+TVMTSVYGVTY
Sbjct: 310 DEPQDVYVGVMHEVVRRKELSYNR---------AAKLVNGLIDRGVVKRTVMTSVYGVTY 360
Query: 819 IGARDQIKRRLKERGAPMEEA--ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKI 876
IGAR QI+ ++ +G ++E E+F A Y A +T+ +G++F AR M+WL CA++
Sbjct: 361 IGARQQIQEKIISKGHDVDEMSNEIFQACGYVASLTMEVMGDLFTGARETMNWLTTCARM 420
Query: 877 IASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQR--TAFPPN 934
I P+ W +P+GLP +QPYR+ T+ T LQ +TL E++ + + +QR +AFPPN
Sbjct: 421 ITQHGFPLAWVSPIGLPAIQPYRQKKAATIVTLLQTVTLINESDDLPIHKQRQVSAFPPN 480
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
F+HSLD SHM++TA+ + GLTF+ VHDS+WTHACD+DEMN LR+ FV+LY P+ E
Sbjct: 481 FIHSLDSSHMLLTALEMDRRGLTFSAVHDSFWTHACDIDEMNEALRDVFVDLYSQPLLER 540
Query: 995 LLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
L +++ +P+L FP +P+RGD +L EV + YFF
Sbjct: 541 LKQTWEMRYPELEFPDIPKRGDLNLAEVKQAKYFF 575
>gi|392563654|gb|EIW56833.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 1130
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/811 (39%), Positives = 455/811 (56%), Gaps = 79/811 (9%)
Query: 251 RCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQE 310
R + +K +P+ L + +++IT+ +LM L +GG + +A +G A+E E
Sbjct: 244 RRKGSKEDPQLSPFLKLLKPEKLSLITVLELMHLHGSGGVQDGMKTARALLAVGRAVEGE 303
Query: 311 VRIHKFLEKTKKKN-ETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG 369
HK E KK N N + N T + DL +++ A + +
Sbjct: 304 ---HK-AEMCKKNNISVPNANPARSGDQNVFTNLGYR------DL-HARRVTARKYMEDS 352
Query: 370 QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKET 427
++ W Q R K+GS +++ L A +Q + + + PAF H S E
Sbjct: 353 EEWTSDWSQLVRVKIGSFLVDCLMDVATVQRSIKDPRTGEKLTEEQPAFFH-----SYEY 407
Query: 428 KGGSKKYGVIECNPLVLKGLER--TARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
+ G K GVI+ NP V + + + A + ++PMLV P W Y+ G + + ++ MR
Sbjct: 408 QRG-HKLGVIKFNPAVAERMSKDPIAETLHPRHLPMLVKPKPWLSYNNGGYLYSRTWAMR 466
Query: 486 THGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL-- 542
+++Q ++ +LE VF LD L +T WR+N V V+ ++W+ G R A +
Sbjct: 467 FKESREQELYLRHASDAGRLELVFAGLDVLSSTPWRINRTVFDVVLKVWNSGERFAKIPP 526
Query: 543 --VDRNDVPLPEKPETEDEAQL----RKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
D + P + +++A++ R+ W K N HS RC I K+ +AR
Sbjct: 527 AVPDEPEPERPPNMDFDNKAKMVYLERQKSWM--QTKASN---HSDRCSINYKVEIARAF 581
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+ Y PHNVDFRGRAYP+ P+L+H+G DL RG+L F E + LG GL WLKIHLANL
Sbjct: 582 LGDT-IYLPHNVDFRGRAYPIPPHLSHIGDDLSRGLLLFGEAKPLGARGLRWLKIHLANL 640
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
G DK S + R+ F HLDDI+DSA++PLEG RWW KA+DP+QCLA CI L AL S
Sbjct: 641 --AGYDKASFDERVEFVHEHLDDIYDSAERPLEGGRWWTKADDPWQCLATCIELKAALTS 698
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
PE + +PVHQDG+CNGLQHYAALG D +GAA VNL A ++P+DVY+ +A V I
Sbjct: 699 PDPEAYECALPVHQDGTCNGLQHYAALGGDAVGAAQVNLAAADRPSDVYTYVAKMVEDQI 758
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-AP 835
QRD + D AKLL ++ RK+VKQTVMT+VYGVT++GARDQI+R+LK+RG P
Sbjct: 759 QRDLKEDHPF------AKLLAGKISRKVVKQTVMTTVYGVTFVGARDQIERQLKDRGDVP 812
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS---------------- 879
+E+ L A+ Y AK L ++G++F+ A+ I +WL CA+++A
Sbjct: 813 IEQCWL--AASYLAKKVLASIGDLFKGAKEIQTWLNTCARLVAKAIPQDRLVQSMTEPPP 870
Query: 880 ----ENQP---------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMV 924
NQP V WTTPLGLP+VQPYR + R V T+LQ + + V
Sbjct: 871 KAKRSNQPRWKKEQMTSVVWTTPLGLPIVQPYRSIKRKQVMTALQTVFISDPNIPSTVNA 930
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
++Q +AFPPNF+HSLD +HMM+TA+ CR GLTFA VHDSYWTHA +D+MN I+R+ F+
Sbjct: 931 QKQASAFPPNFIHSLDATHMMLTALECRSQGLTFASVHDSYWTHAGSIDQMNAIIRDTFI 990
Query: 985 ELYEMPIFENLLDSFQKSFPKLVFPPLPERG 1015
L+ + L F++ + P + +G
Sbjct: 991 ALHSSDVLSALAQEFRERYADYKVPLVSLQG 1021
>gi|410077803|ref|XP_003956483.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
gi|372463067|emb|CCF57348.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
Length = 1284
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 321/861 (37%), Positives = 471/861 (54%), Gaps = 87/861 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E A + A ++ D E K +L +SL W+ + + KE
Sbjct: 347 RQHALELRASDAAKERWKH---DFEEAKARGDLSIKRSLNAKLWKWYNAMLPLLKKEINL 403
Query: 252 CRMAKHKVA---------------YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARV 296
CR K A YAPY + + M VI + +++ L TGG R
Sbjct: 404 CRAVSEKSAANKERLPKADSKRLEYAPYLALVNPEKMCVIAILEILKLNSTGGIIEGMRT 463
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK 356
+A +G AIE E R + L KNE+ +D N + E + +K +
Sbjct: 464 ARALISVGKAIEMEFRSEQLL-----KNESYIFKD-----VNKKSPEFKTYLRKAKKSFR 513
Query: 357 KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA-DQLADAPPDIF-- 413
K+ + + W Q RAKVGS ++ +L A ++ D + IF
Sbjct: 514 SSKIEQAKIV---------WPQSIRAKVGSILVSILIHVAKVEIEGIDPITHQK--IFGT 562
Query: 414 -PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTG 470
PAF+H S + GSK GVI + +++ L ER + +PMLV P W
Sbjct: 563 APAFSH-----SYQYHNGSK-LGVIRIHKSLVQQLDGERLMASVQPQLLPMLVEPRPWVN 616
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVL 529
+ G +++ S ++R+ + +Q ++ Q L+ V++ L+ LG+T W VN R+ ++
Sbjct: 617 WKSGGYYYTQSTLVRSKDSPEQIAYLEAASNVQALDKVYDGLNVLGDTAWTVNRRIFEII 676
Query: 530 DRIWSCGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIE 587
++W+ GG ++ + + LP P+ D + + +W+ K + + + S RCD+
Sbjct: 677 SKVWNKGGSFLEIPGIQQESEFLPPPPKNADPSVINEWKNKNKILANKYSSNRSMRCDLN 736
Query: 588 LKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH 647
KL +AR E FY+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F +G+ LGK GL
Sbjct: 737 YKLEIARAFLGER-FYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKRLGKEGLS 795
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR-WWLKAEDPFQCLAV 706
WLK+HL+NLY GVDK+ R F ++HL++I DSA+ PL G+ WW KA+ P+Q LA
Sbjct: 796 WLKVHLSNLY--GVDKVPLLERENFIDDHLEEIKDSAENPLNGKYLWWQKADKPWQALAT 853
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
CI L EAL+ +PE FISH PVHQDG+CNGLQHYAALG D GA VNLV EKP DVY+
Sbjct: 854 CIELNEALKLENPEDFISHQPVHQDGTCNGLQHYAALGGDIEGAQQVNLVPGEKPNDVYA 913
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A V ++ Q+D P+ AK L+ +++RK+VKQTVMT VYGVT +GA QI
Sbjct: 914 HVAKIVQGKLRETLQKD----PNDEMAKFLVDKLNRKVVKQTVMTHVYGVTLLGATLQID 969
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------ 880
++L + + ++ S Y A+ A+ E F+ A I WLG C+K ++
Sbjct: 970 KQLNDLFD--DSSDSMKYSKYLARHVFAAIRESFEGAHLIQDWLGVCSKKLSKSIRLDVD 1027
Query: 881 -------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKR 926
N+P V WTTPLGLP+VQPYR+L + ++T+LQ + + +V +R
Sbjct: 1028 EKSFKNGNKPEFMTSVIWTTPLGLPIVQPYRQLSKKQIETNLQSVFISDPFAVNQVNARR 1087
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
Q+ FPPNF+HSLD SHM+++A C K GL FA VHDSYWTHACDV +MN+ LRE+FV+L
Sbjct: 1088 QKAGFPPNFIHSLDASHMLLSASECHKDGLVFASVHDSYWTHACDVSKMNKHLREQFVKL 1147
Query: 987 YEMPIFENLLDSFQKSFPKLV 1007
+E+ + E L + F + + V
Sbjct: 1148 HEVDLIERLKEEFDERYKNYV 1168
>gi|336366344|gb|EGN94691.1| hypothetical protein SERLA73DRAFT_114135 [Serpula lacrymans var.
lacrymans S7.3]
Length = 986
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/782 (38%), Positives = 439/782 (56%), Gaps = 68/782 (8%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
P+ + +++IT+ ++M L +GG + +A +G A+E E + + K
Sbjct: 106 GPFLQLVKPSKLSLITILEIMRLNGSGGVSDGMKTARALLTVGRAVENEYKA----QMCK 161
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
+ N + G+ L + ++ A + + ++ W Q R
Sbjct: 162 RNNIAIPSQSRPGEYGFFTGFGYRDLHAR--------RVTAAKYTMDSEEWTTEWTQLLR 213
Query: 382 AKVGSRVIELLTQTAYIQSPA--DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+VGS +++ L A + A + + + PAF HA V +K GVI
Sbjct: 214 VRVGSILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAYEYVR------GQKLGVIRL 267
Query: 440 NPLVLKGLERTA-RHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 497
NP+V + + R + P ++PMLV P W YD+G + + S MR +++Q+ ++
Sbjct: 268 NPVVADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYNKSSAMRFKDSQEQQSYLQ 327
Query: 498 RTPK-KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPE 555
+ +E V+ LD LG+T W++N V V+ +W+ G RL L D P PEKP+
Sbjct: 328 HASELGNVELVYAGLDVLGSTPWKINRNVFDVVLTVWNSGERLCKLPPSVFDQPEPEKPD 387
Query: 556 --TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
+ D + +++ + HS RC + K+ +AR + Y PHN+DFRGR
Sbjct: 388 NLSMDIKAKSVYGQRLKAYMQAKANNHSDRCSVNYKIEIARAFLGDT-MYLPHNLDFRGR 446
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYP+ P+LNH+G DL RG+L F E + LG+ GL WLKIHLANLY G DK + + R+ +
Sbjct: 447 AYPIPPHLNHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GFDKANFDERVEYV 504
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
LD+++DSA+KPLEGRRWW KA+DP+QCLA C+ L AL S PE ++S +PVHQDG+
Sbjct: 505 MERLDEVYDSAEKPLEGRRWWTKADDPWQCLATCMELRAALESEDPEAYMSSLPVHQDGT 564
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALG D GA VNL E+P+DVY+ +A ++QR D A D A
Sbjct: 565 CNGLQHYAALGGDNRGAQQVNLSVTERPSDVYTYVAN----MVQRQLDEDAA--NDHKYA 618
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
K+L +V RK+VKQTVMT+VYGVTYIGARDQI+R+LK+R + E E + A+ Y AK TL
Sbjct: 619 KMLQGKVARKVVKQTVMTTVYGVTYIGARDQIERQLKDR-KDIPEEECWNAAAYLAKKTL 677
Query: 854 TALGEMFQAARGIMSWLGECAKIIA----SENQP-------------------------- 883
+G++F A+ I +WL CA+++A +E P
Sbjct: 678 FCIGDLFSGAKAIQTWLNLCARLVAKSIPAERIPEALEAEKTKRRLPVSTNRIRKEQMTS 737
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDG 941
V WTTPLGLP+VQPYRK+ R + T+LQ + + +V +Q +AFPPNF+HSLD
Sbjct: 738 VVWTTPLGLPIVQPYRKVKRKQIMTALQTVYISDPNAPAEVNANKQASAFPPNFIHSLDA 797
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
+HMM+TA+ CR G+TFA VHDSYWTHA +D+M+ I+R+ F+ L+ + L F++
Sbjct: 798 THMMLTALECRTQGVTFASVHDSYWTHASSIDQMSEIIRDTFIALHSSDVLGKLYSEFKE 857
Query: 1002 SF 1003
+
Sbjct: 858 RY 859
>gi|336379013|gb|EGO20169.1| hypothetical protein SERLADRAFT_363576 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1134
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/782 (38%), Positives = 439/782 (56%), Gaps = 68/782 (8%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
P+ + +++IT+ ++M L +GG + +A +G A+E E + + K
Sbjct: 254 GPFLQLVKPSKLSLITILEIMRLNGSGGVSDGMKTARALLTVGRAVENEYKA----QMCK 309
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
+ N + G+ L + ++ A + + ++ W Q R
Sbjct: 310 RNNIAIPSQSRPGEYGFFTGFGYRDLHAR--------RVTAAKYTMDSEEWTTEWTQLLR 361
Query: 382 AKVGSRVIELLTQTAYIQSPA--DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+VGS +++ L A + A + + + PAF HA V +K GVI
Sbjct: 362 VRVGSILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAYEYVR------GQKLGVIRL 415
Query: 440 NPLVLKGLERTA-RHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 497
NP+V + + R + P ++PMLV P W YD+G + + S MR +++Q+ ++
Sbjct: 416 NPVVADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYNKSSAMRFKDSQEQQSYLQ 475
Query: 498 RTPK-KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPE 555
+ +E V+ LD LG+T W++N V V+ +W+ G RL L D P PEKP+
Sbjct: 476 HASELGNVELVYAGLDVLGSTPWKINRNVFDVVLTVWNSGERLCKLPPSVFDQPEPEKPD 535
Query: 556 --TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
+ D + +++ + HS RC + K+ +AR + Y PHN+DFRGR
Sbjct: 536 NLSMDIKAKSVYGQRLKAYMQAKANNHSDRCSVNYKIEIARAFLGDT-MYLPHNLDFRGR 594
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYP+ P+LNH+G DL RG+L F E + LG+ GL WLKIHLANLY G DK + + R+ +
Sbjct: 595 AYPIPPHLNHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GFDKANFDERVEYV 652
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
LD+++DSA+KPLEGRRWW KA+DP+QCLA C+ L AL S PE ++S +PVHQDG+
Sbjct: 653 MERLDEVYDSAEKPLEGRRWWTKADDPWQCLATCMELRAALESEDPEAYMSSLPVHQDGT 712
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALG D GA VNL E+P+DVY+ +A ++QR D A D A
Sbjct: 713 CNGLQHYAALGGDNRGAQQVNLSVTERPSDVYTYVAN----MVQRQLDEDAA--NDHKYA 766
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
K+L +V RK+VKQTVMT+VYGVTYIGARDQI+R+LK+R + E E + A+ Y AK TL
Sbjct: 767 KMLQGKVARKVVKQTVMTTVYGVTYIGARDQIERQLKDR-KDIPEEECWNAAAYLAKKTL 825
Query: 854 TALGEMFQAARGIMSWLGECAKIIA----SENQP-------------------------- 883
+G++F A+ I +WL CA+++A +E P
Sbjct: 826 FCIGDLFSGAKAIQTWLNLCARLVAKSIPAERIPEALEAEKTKRRLPVSTNRIRKEQMTS 885
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDG 941
V WTTPLGLP+VQPYRK+ R + T+LQ + + +V +Q +AFPPNF+HSLD
Sbjct: 886 VVWTTPLGLPIVQPYRKVKRKQIMTALQTVYISDPNAPAEVNANKQASAFPPNFIHSLDA 945
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
+HMM+TA+ CR G+TFA VHDSYWTHA +D+M+ I+R+ F+ L+ + L F++
Sbjct: 946 THMMLTALECRTQGVTFASVHDSYWTHASSIDQMSEIIRDTFIALHSSDVLGKLYSEFKE 1005
Query: 1002 SF 1003
+
Sbjct: 1006 RY 1007
>gi|302676686|ref|XP_003028026.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
gi|300101714|gb|EFI93123.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
Length = 1086
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 305/819 (37%), Positives = 454/819 (55%), Gaps = 91/819 (11%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
+PY + A+ ++++T+ +LM L TGG + +A +G A+E E +
Sbjct: 167 SPYLALVNAERLSLLTIMELMTLHDTGGVTDGMKTARAVIAVGKAVEAEYKAQMC----- 221
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
K + S+T +++ ++++++ A R + G+ PW R
Sbjct: 222 -------KRNHIAVPSSTRSSDVSVFSNLGYSNLQERRVAAARLMEDGEAWTAPWSVHTR 274
Query: 382 AKVGSRVIELLTQTAYIQSPADQLADAP--PDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
A+VG +I+ L TA +Q A D + PAF H+ V ++ GVI+
Sbjct: 275 ARVGGVLIDCLMDTAKVQRTAVDKNDGKILTEEQPAFYHSYEYVQ------GQRLGVIKL 328
Query: 440 NPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 497
N V + E T + ++PMLV P W Y+ G + + +Y MR G+++Q+ +K
Sbjct: 329 NQEVAAHMANEWTIDTVHPRHLPMLVKPKPWLNYNDGGYLYHKTYAMRFKGSREQQAYLK 388
Query: 498 R-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPE 555
+ Q E V+ LD LG+T W++N ++ V+ +W+ G R L D P PE
Sbjct: 389 HASDAGQCELVYAGLDVLGSTPWKINRKIFDVVLEVWNRGDRWGKLPPATFDEPEPEALS 448
Query: 556 TEDEAQLR-KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRA 614
+ +++ R W ++ + + HS RC + K+ +AR E FY PHN+DFRGRA
Sbjct: 449 PDADSRKRADWSHAMKLYNQAKQSNHSHRCSVNYKIEIARTFLGET-FYQPHNLDFRGRA 507
Query: 615 YPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE 674
YP+ P+LNH+G DL RG+L FAE + LG+ G WLKIH+ANLY G DK S + R+ + E
Sbjct: 508 YPVPPHLNHIGDDLSRGLLMFAEKKPLGERGFRWLKIHIANLY--GFDKASFDERVQWVE 565
Query: 675 NHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSC 734
+ L D++DSA+ P+ G+RWWL+A+DP+QCLA + L +A+ S +P F S +PVHQDG+C
Sbjct: 566 DRLADVYDSANNPINGKRWWLEADDPWQCLAASMELRDAIESGNPLAFESSLPVHQDGTC 625
Query: 735 NGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR-DPAVFPDALRA 793
NGLQHYAALG D GAA VNL ++P+DVY+ + V I++ D ++ DP A
Sbjct: 626 NGLQHYAALGGDPEGAAQVNLQKADRPSDVYTYVGRMVERIMEEDEKKGDPM-------A 678
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAKVT 852
LL ++ RK+VKQTVMT+VYGVT+IGARDQI+R+L++R P E +GA+ Y A+
Sbjct: 679 ILLKGKISRKVVKQTVMTTVYGVTFIGARDQIERQLRDRKDIPPEHC--WGAATYLARKV 736
Query: 853 LTALGEMFQAARGIMSWLGECAKIIA-------------SENQ----------------- 882
L +G++F A+ IM+WL CA++IA +EN+
Sbjct: 737 LACIGDLFYGAKHIMTWLNLCARLIAKSIPMDRLQEMIVAENEQAKAKQDKRKRKDLGSK 796
Query: 883 ----------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTA 930
V WTTP+GLP+ QPYRK R VKT+LQ ++T +V +Q TA
Sbjct: 797 HKVLKREQMTSVVWTTPMGLPIAQPYRKATRKQVKTALQTVLITDPNSLAEVNSSKQATA 856
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD +HMM+TA+ CR+ GLTFA VHDSYWTHAC +D+M+ I+R+ F+ L+
Sbjct: 857 FPPNFIHSLDATHMMLTALECRQQGLTFASVHDSYWTHACSIDQMSGIIRDTFIALHSSD 916
Query: 991 IFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ L F + P + LG+P F
Sbjct: 917 VLMRLHKEFLTRYANYKIPLIS----------LGAPKFM 945
>gi|393232267|gb|EJD39851.1| DNA/RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1218
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 323/832 (38%), Positives = 454/832 (54%), Gaps = 90/832 (10%)
Query: 239 EPLRDAIAKEQERCRMAKHKVA---YAPYFDQLPADMMAVITMHKLMGLLMTG------- 288
E L I K + R A A PY L AD ++++T+ +LM L G
Sbjct: 292 EQLESEIVKIEVHERRAAQTSARPHIGPYLRLLRADKLSMLTIMELMRLHSAGTSGSSGA 351
Query: 289 -GEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL 347
G ++ +A I A+E E H ++K + S + +L
Sbjct: 352 TGADPGVKLARALISIAQAVELE---HAAQLCRRRKVQLPANTGVTSFFSQSAQARMLQL 408
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQDDFKP-WGQDARAKVGSRVIELLTQTAYIQSPADQ-- 404
R +++QK A D ++P W Q R K+G+ +++ L A I+
Sbjct: 409 R------LERQKALA-------DDAWQPEWSQITRVKLGAFLVDQLMAVAKIERTRTHPV 455
Query: 405 LADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL-ERTARHMVIP-YMPML 462
+ + AFTH + E + G +K GVI+ NPLV + L E R +V P ++PM+
Sbjct: 456 TGEKLTEEQAAFTH-----TYEYQRG-QKLGVIKLNPLVTECLAEAPVRDLVHPRHLPMV 509
Query: 463 VPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK-KQLEPVFEALDTLGNTKWRV 521
V P W +D G + F + VMR +++Q +++ +E V+ LD LG+T W +
Sbjct: 510 VKPKPWIDHDNGGYLFSRASVMRIKDSQEQLTYLRQASVLGNMELVYSGLDVLGSTPWHI 569
Query: 522 NNRVLSVLDRIWSCGGRLADLV-DRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENR-ER 579
N V V+ +W+ G L + + + P P+KPE E + Q + + + N+
Sbjct: 570 NRGVFDVVLEVWNSGQGLGSIPPAKLEEPEPDKPEDETDMQAKVAYLQKLKIWTTNKGNN 629
Query: 580 HSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 639
HS+RC + KL +AR E Y+PHN+DFRGRAYP+ P+LNH+G DL R +L+FAE R
Sbjct: 630 HSERCSVNYKLEIARAFLGET-LYFPHNIDFRGRAYPIPPHLNHMGDDLSRALLQFAESR 688
Query: 640 TLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAED 699
LG+ G+ WLKIHL+NLY G DK S + R+AFTE HLD++FDSAD PL G +WW KAED
Sbjct: 689 PLGERGVRWLKIHLSNLY--GFDKASFDDRVAFTEKHLDEVFDSADNPLTGNKWWQKAED 746
Query: 700 PFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVARE 759
+QCLA C LT ALRS P + S +PVHQDG+CNGLQHYAALG D +GA VNL E
Sbjct: 747 QWQCLAACKELTAALRSPDPYAYESCLPVHQDGTCNGLQHYAALGGDMIGAQQVNLDVTE 806
Query: 760 KPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYI 819
+PADVYS +A V I +DA++ AKL ++ RK+VKQTVMT+VYGVTYI
Sbjct: 807 RPADVYSFVANMVEAEIAKDAEKGNGY------AKLAQGKISRKIVKQTVMTTVYGVTYI 860
Query: 820 GARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA- 878
GARDQI R+L++R + FG + Y A+ TL +G++F+ A+ IMSWL +++IA
Sbjct: 861 GARDQILRQLRDRKDLFHYDDTFGIAGYLARKTLDCIGDLFKGAKDIMSWLTTTSRLIAR 920
Query: 879 -------------------------------------SENQPVRWTTPLGLPVVQPYRKL 901
+ V WTT LGLP+VQPYRK+
Sbjct: 921 SIPASRVDEAVADLTDGKAHRNVAGKLNRAKGSRMDTEQMTAVVWTTMLGLPIVQPYRKV 980
Query: 902 GRHTVKTSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFA 959
R + T+LQ + + +V K+Q TAFPPNF+HSLD +HMM+TA+ CR LTFA
Sbjct: 981 KRKQILTNLQTVYISDPNIPTEVDAKKQATAFPPNFIHSLDATHMMLTALECRANNLTFA 1040
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPL 1011
VHDSYWTHA +D M+ I+R+ F+ L+ + E L D F+ + V P L
Sbjct: 1041 SVHDSYWTHASTIDHMSIIIRDTFIALHGSNVLERLADEFKTRYAGHVVPVL 1092
>gi|50306641|ref|XP_453294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642428|emb|CAH00390.1| KLLA0D05247p [Kluyveromyces lactis]
Length = 1263
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 332/937 (35%), Positives = 493/937 (52%), Gaps = 109/937 (11%)
Query: 102 RIGEILNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEM 161
RI E L+ + KN NF+ E + EE+ E E L +
Sbjct: 281 RIDEYLSDPSMQSMINGTTEKNINFF---------EIYKNLKTEEEQ---EAFNEFLDMI 328
Query: 162 KKEEQREGENGS-----GRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLM 216
E QRE EN S R + + G ++ K V++ WE + + ++
Sbjct: 329 NVERQRELENRSFDASKERWKYEFDQAASQGGLKLKKNLNVRL----WE-----WYQQML 379
Query: 217 DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER-CRMAKHKVAYAPYFDQLPADMMAV 275
+ Q++A +D + KEQ+ + ++ Y PY + + M V
Sbjct: 380 PVVRQEVAL---------------CQDLLEKEQKAPNKQNSDRLKYGPYLLLVEPEKMCV 424
Query: 276 ITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD 335
IT+ +L+ L +GG R +A +G +IE E R K L K + NK E
Sbjct: 425 ITILELLKLQSSGGVTEGMRTARAVLSVGRSIEMEFRSEKLLRSENKMFKEVNKRSHEFK 484
Query: 336 ESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQT 395
+ Q R + +++ W D +AK+GS +I +L
Sbjct: 485 -------------------MFVQNAKTALRNMHVEENMIQWPSDVKAKIGSILISMLIHV 525
Query: 396 AYIQSPADQLADAPPDI--FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTA 451
+ + + PAF H + + G+K G+++ + ++ L ER
Sbjct: 526 SKVTVEGVDPITKEKVVGEAPAFCHTF-----QYRSGTK-IGILKIHRSLVNQLSAERMT 579
Query: 452 RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEA 510
++ ++PMLV P WT ++ G + + S ++R+ + +Q +K ++ ++ V+E
Sbjct: 580 TNIQPQHLPMLVRPRPWTNWNSGGYNYSQSTLIRSRDSPEQIAYIKAVSEQGSIDNVYEG 639
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL---VDRNDVPLPEKPETEDEAQLRKWQW 567
L+ LGNT W +N ++ +++ +W+ G D+ +D + P P+ +ED L++W+
Sbjct: 640 LNVLGNTPWTINEKLFNIVSEVWNTGEGFLDIPPVLDNFEFP-PQPARSEDPLILKEWRN 698
Query: 568 KVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSD 627
K R + E + S RCD KL +AR E+ FY+PHN+DFRGRAYP+ P+ NHLG+D
Sbjct: 699 KCRQMSNEFKGFKSYRCDSNYKLEIARAFLGEK-FYFPHNMDFRGRAYPLAPHFNHLGND 757
Query: 628 LCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKP 687
+ R +L F G+ LG SGL WLKIHLANLY G+DK S E R+ F + HL +I +SA+ P
Sbjct: 758 MTRSLLIFWNGKKLGTSGLQWLKIHLANLY--GMDKCSFEERVEFADTHLKEIRESAEHP 815
Query: 688 LEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDT 747
L+G RWW KA+ P+Q LA CI L EAL+ +PE FISH PVHQDG+CNGLQHYAALG D
Sbjct: 816 LDGTRWWTKADKPWQFLATCIELNEALKLDNPENFISHQPVHQDGTCNGLQHYAALGGDI 875
Query: 748 LGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQ 807
GA VNLV ++P DVY+ +A V ++ A +A +L + RK+VK+
Sbjct: 876 EGARQVNLVPSDRPQDVYAFVAKLVTKRLENSAAAGDE------QAAILKDLISRKVVKR 929
Query: 808 TVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAKVTLTALGEMFQAARGI 866
TVMT+VYGVT++GA DQI + L + P E EL S Y AK ++ E+F AA I
Sbjct: 930 TVMTNVYGVTFVGAADQIMKELDQYFDKPEESNEL---SRYLAKHVFASIRELFHAAHLI 986
Query: 867 MSWLGECAKIIASE-------NQ-----------PVRWTTPLGLPVVQPYRKLGRHTVKT 908
WLGECAK I+ NQ V WT+PLGLPVVQPYR L + V+T
Sbjct: 987 QDWLGECAKKISKSVRLDFDLNQSKTINSSDLMTSVIWTSPLGLPVVQPYRDLKKKQVQT 1046
Query: 909 SLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
+LQ +T + +RQ+ PPNF+HSLD SHM+++A+ C KAGL FA VHDSYW
Sbjct: 1047 NLQTVFITDPFAINPINPRRQQAGLPPNFIHSLDASHMLLSAIQCGKAGLDFAAVHDSYW 1106
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
THA +VD MNR+LR++F++L+E+ + E L + F + +
Sbjct: 1107 THASEVDNMNRLLRQEFIKLHEVDLIERLKNEFDERY 1143
>gi|343427710|emb|CBQ71237.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Sporisorium reilianum SRZ2]
Length = 1551
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 316/826 (38%), Positives = 460/826 (55%), Gaps = 90/826 (10%)
Query: 242 RDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAAC 301
+DA + + +R M + P+ L +A+IT+ +LM + GG + +A
Sbjct: 604 QDANSSKHDRKAMLPMEQQILPFLHLLSPAKLALITILELMRMSGNGGVSDGMKTTRALL 663
Query: 302 IIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK-VTDLIKKQKL 360
+G AIE E + + +KN + Q LRK+ + DL ++++
Sbjct: 664 AVGRAIEME-----YHSEVVRKNPKI---------FSNAHAAQATLRKRGLIDLAARREI 709
Query: 361 PA--VRRIVKGQDDFKP-WGQDARAKVGSRVIELLTQTAYIQSPA-DQLADAPPDIFPAF 416
A +++ +G P W Q RA+VGS +++ L A + A D+ + PAF
Sbjct: 710 KAWQMQQEEEGVLSSIPRWTQPVRARVGSYLVQHLMHVATVNRKATDRDGVLWEEDQPAF 769
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKG 474
+ + G KK GVI+ N ++ K L++ + + ++PMLVPP WT +D G
Sbjct: 770 YSTYQYL------GGKKLGVIKLNEVIAKRLDKDSIQETLHPRHLPMLVPPKPWTSHDSG 823
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
++ + MR + +Q ++ + L+ V ALD LGNT W++N + V+ +W
Sbjct: 824 GYYSVRQSAMRFKDSAEQGSYLRAASDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVW 883
Query: 534 SCGGRLADLVD-RNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRER---HSQRCDIELK 589
+ G LAD+ D P P+KP+ D ++ ++ +K+ N++R HSQRCD+ K
Sbjct: 884 NSGEDLADMPPIEMDAPEPQKPDNYDH-DMKARSVYLQRLKQWNQQRASNHSQRCDVNYK 942
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L +AR E FY+PHN+DFRGRAYPM P+LNH+G+DLCRG+L FA+ + LGK+GL WL
Sbjct: 943 LEIARAYVGER-FYFPHNMDFRGRAYPMPPHLNHIGNDLCRGLLMFADSKPLGKAGLRWL 1001
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
+IH++N++ G DK S R F +H DI DS ++PL+G RWWLKA+DP+QCLA C+
Sbjct: 1002 RIHISNVF--GYDKASFAEREQFAIDHEADIRDSVERPLDGNRWWLKADDPWQCLASCME 1059
Query: 710 LTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL PE + S +PVHQDG+CNGLQHYAALG D GA VNL EKPADVYSG+
Sbjct: 1060 LKAALEHPEGPEAYESSLPVHQDGTCNGLQHYAALGGDLAGAKQVNLSRGEKPADVYSGV 1119
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V+ ++ D A D L A +L +V RK+VKQTVMT+VYGVT+IGA++Q+ R+
Sbjct: 1120 ADLVIKVLD-----DEAAKGDRL-ASILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQ 1173
Query: 829 LKERG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA--------- 878
L +RG P E +LF A+ + AKV ++ +G +F A+ I WL AK+IA
Sbjct: 1174 LADRGDVPAE--DLFAAASHLAKVIMSCIGNLFSGAQKIQDWLSFSAKVIAKSIPAQRLE 1231
Query: 879 ---------------------------------SENQPVRWTTPLGLPVVQPYRKLGRHT 905
+ V WTT LGLPVVQPYRK +
Sbjct: 1232 EATRPYMPSETALKRADARGFSRDPAKADRIVKEQMTSVIWTTALGLPVVQPYRKSKKKQ 1291
Query: 906 VKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHD 963
V T++Q + + +V +Q +AFPPNF+HSLD +HM++TA+ C AGLTFA VHD
Sbjct: 1292 VSTAMQTVFIHDPLSNSEVSPAKQASAFPPNFIHSLDATHMILTALECHAAGLTFASVHD 1351
Query: 964 SYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
SYWTHA D+D M+ ++RE FV L+ I L + F + + P
Sbjct: 1352 SYWTHAADIDTMSDMIRETFVRLHSQDILHRLREEFLQRYAGYKVP 1397
>gi|347838129|emb|CCD52701.1| similar to mitochondrial DNA-directed RNA polymerase [Botryotinia
fuckeliana]
Length = 1399
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 324/924 (35%), Positives = 487/924 (52%), Gaps = 94/924 (10%)
Query: 135 VAEAVSSTDVEEDV-SIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLK 193
V+E + D + V VE+ + E+++ +Q+ S R + + S Y M K
Sbjct: 291 VSETPRAVDPSDGVLQYVEKTSTSVPEVRQTDQKGLGLKSLRKTLSLFSSLPSAGYDMSK 350
Query: 194 MR-------QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLG-----WFEPL 241
M Q ++E +A + A + +R+ +++ L+ +L +S LG W L
Sbjct: 351 MSEEQQRAIQAQLEEDAVQAAIDRWRDESVNLTRLGLSTSL---QSKSLGARMWKWHVAL 407
Query: 242 RDAIAKEQ---ERCRMAKHKVA-------YAPYFDQLPADMMAVITMHKLMGLLMTGGEH 291
D + +E + M +H+ Y P+ LPA+ +A +T+ M L + G
Sbjct: 408 TDTLKEELKAIDEAEMKQHRSTEDISRCEYGPFLRYLPAEKLAALTIIAHMHALSSSGID 467
Query: 292 GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLR--K 349
+ + I ++E E E ++ + D D T+ + K
Sbjct: 468 KGLTLSFSILQIAKSVEDE----SIFETIQQNMAKPSWSDSVADRVRTLRILKAKAHGNS 523
Query: 350 KVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA--DQLAD 407
++TD + V Q W +AKVGS ++E L + A + + +
Sbjct: 524 ELTDNTNSTSF-SPDAFVSSQIRAHEWSVGIKAKVGSFLLESLLKVAKVPVTMVHPETNE 582
Query: 408 APPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH-MVIPYMPMLVPPV 466
+ PAF+HA ++ + G +K GVI N ++++ L+R H ++ ++PMLV P
Sbjct: 583 TVTQMQPAFSHA-----QQYRMG-RKLGVINANKVIVEQLKREPVHSLLAKHLPMLVKPE 636
Query: 467 KWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNR 524
WTG+ G P VMR +G QR+ + L VF+ L+ LG WR+N
Sbjct: 637 PWTGFSSGGFLKHPGRVMRVKNGDADQRNYADAAIDRGNLSTVFKGLNILGEQSWRINQP 696
Query: 525 VLSVLDRIWSCGGRLADLV-DRNDVPLPEKPETE-DEAQLRKWQWKVRNVKKENRERHSQ 582
V ++ W+ G +A+L D+ + P +PET D + R+W V+ V+ HSQ
Sbjct: 697 VFDIMLEAWNSGDAIANLAPDKPKLDYPPEPETSSDPLERRRWVTAVKKVENSKSSFHSQ 756
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
RC +L +AR ++D+ FY+PHNVDFRGRAYP+ PYLNH+G+D CRG++ F G+ LG
Sbjct: 757 RCFQNFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMMFGTGKALG 815
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
SGL WLK+HLAN+Y G DK S + R F ++D+I+DSA PL G+RWWL+AEDP+Q
Sbjct: 816 NSGLRWLKVHLANVY--GFDKASLQEREEFASKNIDEIYDSATNPLGGKRWWLQAEDPWQ 873
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
CLA C+ AL S P +F+S++PVHQDG+CNGLQHYAALG D GA VNL ++PA
Sbjct: 874 CLAACMEFKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGDRPA 933
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
DVY+ +A V I +D + +AK+L ++ RK+VKQTVMT+VYGVT+IGA+
Sbjct: 934 DVYTAVADLVKESIAKD------LLAGQPKAKILNGKITRKVVKQTVMTNVYGVTFIGAK 987
Query: 823 DQIKRRLKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECAKIIAS 879
Q++++L + + + A+ V TAL MF+ A I WLG+CA I++
Sbjct: 988 AQVRKQLVAAHKDLPDNDEINPGTLASYVVTKIFTALSTMFKGAHDIQYWLGDCASRISN 1047
Query: 880 ENQP----------------------------------VRWTTPLGLPVVQPYRKLGRHT 905
P V WTTPL LPVVQPYR
Sbjct: 1048 SLTPEQIERIVAQASEQEGRPSKRAALALDEISQFKSSVIWTTPLNLPVVQPYRTHKSRL 1107
Query: 906 VKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHD 963
V+T+LQ+L+L ++ V ++Q AFPPNF+HSLD +HM+++AV C +A L FA VHD
Sbjct: 1108 VRTNLQLLSLSEPHRSDPVSSRKQLQAFPPNFIHSLDATHMLLSAVKCNEAKLAFAAVHD 1167
Query: 964 SYWTHACDVDEMNRILREKFVELY 987
S+WTHA D+D MN LR+ F+E++
Sbjct: 1168 SFWTHAADIDTMNTFLRDAFIEIH 1191
>gi|71013602|ref|XP_758640.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
gi|46098298|gb|EAK83531.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
Length = 1566
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 312/823 (37%), Positives = 459/823 (55%), Gaps = 96/823 (11%)
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
+ +R M ++ P+ LPA +A+IT+ +LM + G + +A +G AI
Sbjct: 622 KHDRKAMLPMELQILPFLRLLPASKLALITILELMRMSGNGDVSDGMKTTRAVLQVGRAI 681
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK-VTDLIKKQKLPAVRRI 366
E E + +KN + T Q LRK+ + DL ++++ A +
Sbjct: 682 EME-----YHSDIVRKNPKIFQ---------NAYTAQTTLRKRGLIDLAARREIKAWQ-- 725
Query: 367 VKGQDD------FKPWGQDARAKVGSRVIELLTQTAYIQSPA-DQLADAPPDIFPAFTHA 419
K Q+D W Q RA+VGS +++ L A + A D+ + PAF
Sbjct: 726 -KQQEDEGVLSSIPSWTQTVRARVGSYLVQHLMNVATVNRKATDRDGVLWEEDQPAFYST 784
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHF 477
+ + G KK GVI+ N ++ + L++ + + ++PMLVPP WT +D G ++
Sbjct: 785 YQYL------GGKKLGVIKLNEVIARRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYY 838
Query: 478 FLPSYVMRTHGAKQQRDTVK-RTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG 536
+ MR + +Q ++ + L+ V ALD LGNT W++N + V+ +W+ G
Sbjct: 839 SVRQSAMRYKDSAEQGSYLRVASDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSG 898
Query: 537 GRLADLVD-RNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRER---HSQRCDIELKLSV 592
+AD+ +VP P+KP+ D ++ ++ +K+ N++R HSQRCD+ KL +
Sbjct: 899 KDIADMPPVEMEVPEPQKPDNYDH-DIKARSVYLQRLKQWNQQRASNHSQRCDVNYKLEI 957
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR E FY+PHN+DFRGRAYPM P+LNH+G+DLCRG+L FA+ + LGK+GL WL+IH
Sbjct: 958 ARAYLGER-FYFPHNMDFRGRAYPMPPHLNHIGNDLCRGLLLFADSKPLGKAGLRWLRIH 1016
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
++N++ G DK S R F +H DI DS ++PL+G WWLKA+DP+QCLA C+ L
Sbjct: 1017 ISNVF--GYDKASFGEREQFAIDHEADIRDSVERPLDGNCWWLKADDPWQCLAACMELKA 1074
Query: 713 ALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
AL + PE + S +PVHQDG+CNGLQHYAALG D GA VNL E+PADVYSG+A
Sbjct: 1075 ALEHAEGPEAYESCLPVHQDGTCNGLQHYAALGGDLAGAKQVNLSRGERPADVYSGVADL 1134
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V+ ++ +A + + A +L +V RK+VKQTVMT+VYGVT+IGA++Q+ R+L +
Sbjct: 1135 VIKVLDEEAAKGERL------ASILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLAD 1188
Query: 832 RG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE---------- 880
RG P E +LF A+ + AKV ++ +G +F A+ I WL AK+IA
Sbjct: 1189 RGDVPAE--DLFAAASFLAKVIMSCIGNLFSGAQKIQDWLSFSAKVIAKSIPAQRLEEAT 1246
Query: 881 --NQP------------------------------VRWTTPLGLPVVQPYRKLGRHTVKT 908
QP V WTT LGLPVVQPYRK + V T
Sbjct: 1247 RPYQPNESTLKRADARGFSRDPAKADRIVKEQMTSVIWTTALGLPVVQPYRKSKKKQVST 1306
Query: 909 SLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
++Q + + +V +Q +AFPPNF+HSLD +HM++TA+ C AGLTFA VHDSYW
Sbjct: 1307 AMQTVFIHDPLSNSEVSPAKQASAFPPNFIHSLDATHMILTALECHAAGLTFASVHDSYW 1366
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
THA D+D M+ ++RE FV L+ I L + F + + P
Sbjct: 1367 THAADIDTMSDMIRETFVRLHSQDILYRLREEFLQRYAGYKVP 1409
>gi|403216073|emb|CCK70571.1| hypothetical protein KNAG_0E03120 [Kazachstania naganishii CBS 8797]
Length = 1276
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 314/856 (36%), Positives = 469/856 (54%), Gaps = 86/856 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E A + A ++ D + K +L KSL W+ + + KE E
Sbjct: 347 RQRALELRATDAAKERWKH---DFEDAKQRGDLAIQKSLNAKLWKWYSGMLPILKKEIEL 403
Query: 252 CRMAKHKVA--------YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
CR + A YAPY + + M VIT+ +++ L TGG R +A +
Sbjct: 404 CRQMQATAAKGHSTRAEYAPYLTLVTPEKMCVITILEILKLNSTGGITEGMRTARAVISV 463
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL-IKKQKLPA 362
G A+E E R + L KNE++ + E +SNT + + I+KQKL
Sbjct: 464 GQAVEMEFRSEQLL-----KNESRMFK-EVNKKSNTFKKIVRSAKSAFRAMEIEKQKLL- 516
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA--YIQSPADQLADAPPDIFPAFTHAL 420
W Q RAKVGS ++ +L + A ++ + PAF+H+
Sbjct: 517 -------------WPQAIRAKVGSILVSMLIRIADVTVEGTDPITKEKVYGKTPAFSHSY 563
Query: 421 RTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFF 478
+ K G+++ + ++ L ER + +PMLV P +W + G +F+
Sbjct: 564 QY------HNGVKLGIVKIHKSLINQLNGERLVASVQPQLLPMLVKPREWKNWKSGGYFY 617
Query: 479 LPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
S ++R+ +Q ++ ++ V++ L+ LGNT W VN + +V+ ++W+ G
Sbjct: 618 SQSTLVRSRDCPEQLAYLEAASNSNAIDKVYDGLNVLGNTAWTVNRNIFNVVSKVWNEGK 677
Query: 538 RLADLVDRNDVP--LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
++ ++ LP P+ D A + +W+ K R + E S RCD+ KL +AR
Sbjct: 678 PFLEIPGTQEILELLPPPPKGSDPAVINEWRTKNRYLSNEYSANRSMRCDLNYKLEIARA 737
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
E+ FY+PHNVDFRGRAYP+ P+ NHLG+D+ RG+L F +G+ LG GL WLK+HL+N
Sbjct: 738 FLGEK-FYFPHNVDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKKLGSLGLKWLKVHLSN 796
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
LY GVDK+S + R+AF E+ LD++ DSA+ PL GR WW KA+ P+Q LA C+ L EAL+
Sbjct: 797 LY--GVDKVSLDDRVAFIESQLDEVKDSAEDPLNGRGWWKKADKPWQALATCMELNEALK 854
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA----AR 771
+PE F+SH PVHQDG+CNGLQHYAALG D GA VNL+ P DVYS +A +R
Sbjct: 855 LDNPEDFVSHQPVHQDGTCNGLQHYAALGGDMEGAEQVNLIPGAMPKDVYSHVANIVRSR 914
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
+ V++++ + DP AK L+ +++RK+VKQTVMT VYGVT +GA QI +++ +
Sbjct: 915 LQVLVEQ--ENDPM-------AKFLVDKLNRKVVKQTVMTHVYGVTLVGATLQIDKQIGD 965
Query: 832 RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ--------- 882
+ E+ S Y AK A+ E F+ A I WLGEC K I+ +
Sbjct: 966 YFSDHRES--LKYSKYLAKHVFAAIRESFKGAHLIQDWLGECCKRISKSVRLDVDEKSFK 1023
Query: 883 ---------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAF 931
+ WTTPLGLP+VQPYR++ + V T+LQ + + ++ +RQ+ F
Sbjct: 1024 NGDKLDFMTSIIWTTPLGLPIVQPYREVSKKQVDTNLQTVFISDPFAVNQINARRQKAGF 1083
Query: 932 PPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 991
PPNF+HSLD SHM+++A C + GL FA VHDSYWTHACDV++MN+ +R +FV L+E+ +
Sbjct: 1084 PPNFIHSLDASHMLLSASKCAEEGLDFASVHDSYWTHACDVEKMNKHIRNEFVTLHEVDL 1143
Query: 992 FENLLDSFQKSFPKLV 1007
E L + F + + V
Sbjct: 1144 IERLKEEFDERYRNYV 1159
>gi|50292665|ref|XP_448765.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528077|emb|CAG61728.1| unnamed protein product [Candida glabrata]
Length = 1326
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 314/859 (36%), Positives = 459/859 (53%), Gaps = 98/859 (11%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E A E A ++ + E K ++ KSL W+ + + KE ++
Sbjct: 395 RQEMLERRATEAAKERWK---FEFEEAKARGDISIEKSLNSRLWEWYSAMLPLVKKEAKK 451
Query: 252 C-----------RMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
C R + YAPYF + + M VIT+ +L+ L TGG R +A
Sbjct: 452 CIEELNNSKSSSRKLSSRSEYAPYFTLVNPEKMCVITILELLKLNSTGGVIDGMRTARAV 511
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
+ AIE E R + L N E++ + N + E ++ + + ++
Sbjct: 512 ISVSKAIELEFRSEQLL----------NSENQTFKDINKKSHEFKRYVQSAKRTFRSMEI 561
Query: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ----SPADQ---LADAPPDIF 413
R I W Q RAK+GS +I L A + P + DAP
Sbjct: 562 EKSRII---------WPQTVRAKIGSTLISFLIHVAKVSVEGTDPVTKEKVYGDAP---- 608
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGY 471
AF H K G+I+ + ++ L ER + +PMLV P W G+
Sbjct: 609 -AFAHTY------VYHNGSKLGIIKIHKALINRLNGERLLASVQPQLLPMLVKPRPWKGW 661
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLD 530
G + + S ++R+ + +Q ++ ++ +++ L+ LG T W VN +V V+
Sbjct: 662 KSGGYLYTQSILVRSRDSPEQLAYLQAVSDSGAIDKIYDGLNVLGETAWTVNRKVFDVVS 721
Query: 531 RIWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
++W+ G ++ D LP P + D +R+W+ K + + + S RCD+
Sbjct: 722 KVWNEGTNFLEIPGIQDELKLLPPPPRSSDPTVIREWKLKNKELANKYSSDKSVRCDLNY 781
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
KL +AR E+ FY+PHN+DFRGRAYP+ P+ NHLG+DL R +L F +G+ LG GL+W
Sbjct: 782 KLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDLSRSLLIFWKGKRLGPDGLNW 840
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LK+HL+NL+ GVDK+ E R+ FTE H++DI DSA+ PL G+ WW A+ P+Q LA C+
Sbjct: 841 LKVHLSNLF--GVDKVPLEDRVKFTECHIEDIKDSAENPLNGKGWWKTADKPWQALATCM 898
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L EAL+ +PE +ISH PVHQDG+CNGLQHY+ALG D GA VNLV EKP DVYS +
Sbjct: 899 ELNEALKLDNPEDYISHQPVHQDGTCNGLQHYSALGGDVEGATQVNLVPSEKPQDVYSFV 958
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V +A+ + A +A +L +V RK+VKQTVMT+VYGVTY+GA QI ++
Sbjct: 959 AKLV------EARLEKAAAKGDEKALILKGKVSRKVVKQTVMTNVYGVTYVGATFQIAKQ 1012
Query: 829 LK----ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE---- 880
L +R +E S Y AK A+ E+F+ A I WLGECAK I+
Sbjct: 1013 LTAIFDDRAYSLE------LSKYLAKHVFAAVRELFEGAHLIQDWLGECAKRISKSIRLD 1066
Query: 881 ---------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMV 924
++P + WTTPLGLP+VQPYR G+ V T+LQ + + +
Sbjct: 1067 VDEKSFKNGDKPDYMSSIIWTTPLGLPIVQPYRDAGKKQVITNLQSVFISDPFAINPINS 1126
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
+RQ+ FPPNF+HSLD SHM+++A CR GL FA VHDSYWTHA DVD+MN ++R+KF+
Sbjct: 1127 RRQKAGFPPNFIHSLDASHMLLSAAGCRDNGLDFASVHDSYWTHASDVDKMNVVIRDKFI 1186
Query: 985 ELYEMPIFENLLDSFQKSF 1003
EL+E+ + + L + F + +
Sbjct: 1187 ELHEVDLIQRLKEEFDERY 1205
>gi|270358663|gb|ACZ81452.1| Rpo41 [Cryptococcus heveanensis]
Length = 1256
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 294/797 (36%), Positives = 447/797 (56%), Gaps = 70/797 (8%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH--KFLEKTK 321
Y LP + +A+IT+ ++M + +GG + ++ +G A+E E R K +
Sbjct: 321 YLQLLPVEKLALITILEVMRMSGSGGISDGMKALRGMLAVGKAVETEFRAETIKNIAGVD 380
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG--QDDFK----- 374
+ + + + S + + +++ + +K KL + DD
Sbjct: 381 SHHWLRTIDPQTQKPSRQLVG---SVWRRIGEQVKTSKLEETSDSLSTATHDDLHQVWTP 437
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPA--DQLADAPPDIFPAFTHALRTVSKETKGGSK 432
PW Q A+ VGS +++ L + A ++ + + + PAFTHA + K
Sbjct: 438 PWSQMAQLGVGSELVDALLKVAKVERVGRNPETGEEVVEEQPAFTHAYEYIR------GK 491
Query: 433 KYGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAK 490
K GVI+ NP+V L R + +VI ++PMLV P WT ++ G + +MR +
Sbjct: 492 KLGVIKHNPVVAARLARDSVGVVIHPKHLPMLVEPKPWTSHNNGGYLLHSVPIMRYKESA 551
Query: 491 QQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV---DRN 546
+Q+ +K ++ LEPVF LD L +T W +N +V V+ +W+ G +AD+ +++
Sbjct: 552 EQQSYLKTASEQGHLEPVFHGLDVLSSTAWSINRKVFDVILNVWNSGEAIADIPASEEKS 611
Query: 547 DVPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
+PEKP+ D+ ++ + ++++V R+ H++RC L +AR ++ FY
Sbjct: 612 TYDVPEKPDPRDQDPQKRSLYIERMKSVMAAQRKDHAERCKFNYNLEIARSYLNDV-FYL 670
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG++GL WL IHLAN+Y G DK
Sbjct: 671 PHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGNKKALGETGLKWLHIHLANVY--GFDKA 728
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S E R F + H DIFDSAD PL+G+RWWL+AEDP+QCLA C + ALRSS P + S
Sbjct: 729 SFEERARFAQEHEADIFDSADNPLDGKRWWLQAEDPWQCLATCFEIAAALRSSDPTQYES 788
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+P+HQDG+CNG+QHYAALG D GA AVNL ++PAD+Y+G+ V +I+ D ++
Sbjct: 789 SLPIHQDGTCNGMQHYAALGGDVRGAKAVNLEHGDRPADIYTGVVNIVNKVIEEDQKKGL 848
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
V A L+ + RK+VKQTVMT+VYGVT++GAR+QI ++L RG +E +F
Sbjct: 849 DV------ALLIKKPLGRKVVKQTVMTTVYGVTFVGAREQIAKQLTARGDFAQE-HVFLV 901
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------------------- 885
S Y AK L +G++F A+ IM WL AK+I+ P R
Sbjct: 902 SGYIAKTVLNCIGDLFSGAKAIMDWLTTSAKLISRSVPPERVEEAANNLTTTLRNGKVKS 961
Query: 886 -----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFP 932
WTTPLGLPVVQPYRK + + T+LQ + + +V ++Q TAFP
Sbjct: 962 RAAREFMTSVVWTTPLGLPVVQPYRKAQKKQIMTALQTVYISDPNAPSEVSPQKQATAFP 1021
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNF+HSLD +HM++TA+ CR+ + FA VHDSYWTHA V+ M+ ++R+ F+ L+ +
Sbjct: 1022 PNFIHSLDATHMLLTALKCRQNEIAFASVHDSYWTHASTVESMSDLIRDTFIHLHSQDLV 1081
Query: 993 ENLLDSFQKSFPKLVFP 1009
L D F + + + P
Sbjct: 1082 GELRDEFIQRYGEHRIP 1098
>gi|449541840|gb|EMD32822.1| hypothetical protein CERSUDRAFT_57977 [Ceriporiopsis subvermispora B]
Length = 966
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 314/839 (37%), Positives = 460/839 (54%), Gaps = 90/839 (10%)
Query: 230 MKSLFLGWFEPLRDAIAKE------QERCRMAKH---KVAYAPYFDQLPADMMAVITMHK 280
++S GW + L+ + E +ER K+ K + +P+ L + +++IT+ +
Sbjct: 46 LQSWMWGWHQKLQKRLQAEIENLVEEERKLGGKYQGVKTSLSPFLTLLKPEKLSLITILE 105
Query: 281 LMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTV 340
LM L TGG + +A +G A+E E HK + KKN + + + ++
Sbjct: 106 LMNLHGTGGVSDGMKTARALLGVGRAVELE---HK--AQMCKKNNIAIPQSQFARQDTSL 160
Query: 341 TTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI-Q 399
T R DL + +++ A + + +D W Q R KVG +++ L A I +
Sbjct: 161 FT-----RLGYRDL-QARRVAARKYMEDAEDWTSDWSQLVRVKVGGFLVDCLMDVATITR 214
Query: 400 SPADQLADAPPDIF----PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARH 453
S D + +I+ PAF H+ V K GVI+ NP+V + + +R
Sbjct: 215 SMTDPNGE---EIYSEEQPAFFHSYEYVR------GHKLGVIKLNPVVAERMAKDRIKNT 265
Query: 454 MVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR-TPKKQLEPVFEALD 512
+ ++PMLV P W G D+G + + + MR + +Q + ++ + LE V+ ALD
Sbjct: 266 LHPRHLPMLVKPKPWLGPDQGGYMYNRTTAMRYKDSVEQANYLRHASAAGNLELVYAALD 325
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR-NDVPLPEKPETEDEAQLRKWQWKVRN 571
LG+T W +N R+ ++ +W+ G R+ + +D+P PE+PE + Q + + R+
Sbjct: 326 VLGSTPWNINRRIFDIVLTVWNSGKRMCKMPPVVSDIPEPERPENYETDQQARAIYLQRH 385
Query: 572 --VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
++ HS RC + K+ +AR + + PHNVDFRGRAYP+ P+L+H+G DL
Sbjct: 386 KLYAQQKANNHSDRCSVNYKIEIARAFLGDT-IFMPHNVDFRGRAYPVPPHLSHIGDDLS 444
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
RG+L F E + LG+ G WLK+HLANLY G DK S R+AF E HLDDIFDS D PL+
Sbjct: 445 RGLLLFGEAKPLGERGFWWLKVHLANLY--GYDKGSFPERIAFVEAHLDDIFDSVDHPLD 502
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
GR WW KA+DP+QCLA C+ L A+ S P + +P+HQDG+CNGLQHYAALG DT G
Sbjct: 503 GRMWWTKADDPWQCLATCMELKAAIESGDPHKYECALPIHQDGTCNGLQHYAALGGDTQG 562
Query: 750 AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTV 809
AA VNL ++P+DVY+ +A V I+ D + V A LL +V RK+VKQTV
Sbjct: 563 AAQVNLAVTDRPSDVYTYVADMVEGRIREDVAKGDKV------AMLLQGKVARKVVKQTV 616
Query: 810 MTSVYGVTYIGARDQIKRRLKERG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
MT+VYGVTYIGAR QI+++L RG P EE + AS Y AK L ++G++F+ A+ I
Sbjct: 617 MTTVYGVTYIGARAQIEKQLASRGDIPAEEC--WAASSYLAKHVLGSIGDLFRGAKDIQL 674
Query: 869 WLGECAKIIASENQPVR------------------------------------WTTPLGL 892
W CA++IA P R WTTPLGL
Sbjct: 675 WFTSCARLIAKSIPPERIPHACGLVEEEKKKGRPTAKKHPVVRMKAEQMTSVVWTTPLGL 734
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTAVA 950
P+VQPYR + R + T LQ + + + V ++Q +AFPPNF+HSLD +HMM+TA+
Sbjct: 735 PIVQPYRTVKRKQIMTGLQTVFISDPNQPAAVNSQKQASAFPPNFIHSLDATHMMLTALE 794
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
CR GLTFA VHDSYWTHA D+D M+ I+R+ F+ L+ + L + F + + P
Sbjct: 795 CRAQGLTFASVHDSYWTHAGDIDNMSAIIRDTFIALHSSDVLLQLHNEFLERYKGYKIP 853
>gi|345571061|gb|EGX53876.1| hypothetical protein AOL_s00004g535 [Arthrobotrys oligospora ATCC
24927]
Length = 1466
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 331/874 (37%), Positives = 475/874 (54%), Gaps = 99/874 (11%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
RQ +E +A++ A N +R + P + L W + I +E +
Sbjct: 415 RQRVLEQDAYDAAINRWRADAEASDSLGSKVHNPAINPLLHRWLLAMVPLIKEELKHVEE 474
Query: 255 AK---------HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI-IG 304
A+ + Y PY L + +A IT+ ++ L +G + A A+ I +G
Sbjct: 475 AEASPGKPDNFERCQYGPYLRLLSPEKLAGITITSIIKL-ASGWQDSTAMKASASIISVG 533
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV- 363
+E E E+ +K ETK E E +++ L+K++ ++ ++ L +
Sbjct: 534 RNVEHEY----ISEQLQKAFETKAGEPE--------YYKKKALQKQLAEVKNEKDLAMLI 581
Query: 364 ----RRIVKGQDDF-----KPWGQDARAKVGSRVIELLTQTAYIQ-SPADQ--LADAPPD 411
RR +D + W Q RAKVGS ++ LL Q A I+ P ++ L D
Sbjct: 582 YRQNRRAEMEKDGTGLLLNERWSQPVRAKVGSVLVSLLFQVAKIKVRPTNKKVLKHMDKD 641
Query: 412 IF---PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPV 466
+ PA H + V G KK GVI + K L E + +PM+ P
Sbjct: 642 LAIDQPALVHGYQFV------GGKKIGVIRLHDEFSKKLMTEPLKGTTLAKQLPMIAKPR 695
Query: 467 KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRV 525
W ++ GA++F P+ ++R + +Q VK K L+ +F LD LG+T W +N +V
Sbjct: 696 PWCAWNDGAYYFTPTRMVRVKDSLEQTMYVKEASKHGNLDRLFTGLDVLGSTAWTINQKV 755
Query: 526 LSVLDRIWSCGGRLADL--VDRNDVPLPEKPE-TEDEAQLRKWQWKVRNVKKENRERHSQ 582
V+ ++W+ G + AD+ DV +PE P+ D A ++ + + + HSQ
Sbjct: 756 FDVILQVWNTGDKFADIPPTFEKDVNMPEMPQPNADAAAKAAFKIAYQEMALIRKNHHSQ 815
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
RCD+ KL +AR +E FY+PHNVDFRGRAY M P+LNHLG+DLCRG+L+F+E + LG
Sbjct: 816 RCDVNFKLEIARAFYNEV-FYFPHNVDFRGRAYAMPPHLNHLGNDLCRGLLKFSEKKPLG 874
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
+SGL WLKIHL+NL GG DK S R + E+ ++D+FDSA PL G+RWWL++EDP+Q
Sbjct: 875 ESGLRWLKIHLSNL--GGYDKASLMAREEWAESRMEDVFDSARDPLGGKRWWLESEDPWQ 932
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
LA C+ L A+ S P + S++PVHQDG+CNGLQHYAALG D +GA VNL +KP
Sbjct: 933 MLATCMELEAAMSSKDPLKYESNMPVHQDGTCNGLQHYAALGGDIVGAKQVNLEPADKPQ 992
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
DVY+G+A V + DAQ + AK LL ++RK+VKQTVMT+VYGVT+IGA+
Sbjct: 993 DVYTGVADLVNQAVAEDAQNGNEL------AKDLLGHINRKVVKQTVMTNVYGVTFIGAK 1046
Query: 823 DQIKRRLKERGA-PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
+Q+K RL E+G P + + S Y K T+L MF A I W GECAK I+
Sbjct: 1047 NQVKSRLMEKGVWPRDRVDKL--SIYLTKKIFTSLQSMFTGAHLIQKWFGECAKRISRSV 1104
Query: 882 QP----------------------------------VRWTTPLGLPVVQPYRKLGRHTVK 907
P V WTTPLGLPVVQPYR VK
Sbjct: 1105 SPTQYASFAEHYTGVIPTTGRQAHTKERGKAEFMTSVVWTTPLGLPVVQPYRHDATVAVK 1164
Query: 908 TSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
T+LQ +T+ + +V +RQ AFPPN++HSLD +HM+++A+A ++AGLTFA VHDS+
Sbjct: 1165 TNLQQITIVDTSIINQVNSRRQMGAFPPNYIHSLDATHMLLSAMASKQAGLTFAAVHDSF 1224
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
WTH+CDVD M+R+LR+ FVEL+ + L + F
Sbjct: 1225 WTHSCDVDTMSRVLRDAFVELHSEDLVSKLREEF 1258
>gi|154290650|ref|XP_001545917.1| hypothetical protein BC1G_15645 [Botryotinia fuckeliana B05.10]
Length = 1234
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 323/922 (35%), Positives = 485/922 (52%), Gaps = 90/922 (9%)
Query: 135 VAEAVSSTDVEEDV-SIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLK 193
V+E + D + V VE+ + E+++ +Q+ S R + + S Y M K
Sbjct: 126 VSETPRAVDPSDGVLQYVEKTSTSVPEVRQTDQKGLGLKSLRKTLSLFSSLPSAGYDMSK 185
Query: 194 MR-------QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRD 243
M Q ++E +A + A + +R+ +++ L+ +L KSL W L D
Sbjct: 186 MSEEQQRAIQAQLEEDAVQAAIDRWRDESVNLTRLGLSTSL-QSKSLGARMWKWHVALTD 244
Query: 244 AIAKEQ---ERCRMAKHKVA-------YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
+ +E + M +H+ Y P+ LPA+ +A +T+ M L + G
Sbjct: 245 TLKEELKAIDEAEMKQHRSTEDISRCEYGPFLRYLPAEKLAALTIIAHMHALSSSGIDKG 304
Query: 294 ARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL--RKKV 351
+ + I ++E E E ++ + D D T+ + K ++
Sbjct: 305 LTLSFSILQIAKSVEDE----SIFETIQQNMAKPSWSDSVADRVRTLRILKAKAHGNSEL 360
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA--DQLADAP 409
TD + V Q W +AKVGS ++E L + A + + +
Sbjct: 361 TDNTNSTSF-SPDAFVSSQIRAHEWSVGIKAKVGSFLLESLLKVAKVPVTMVHPETNETV 419
Query: 410 PDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH-MVIPYMPMLVPPVKW 468
+ PAF+HA ++ + G +K GVI N ++++ L+R H ++ ++PMLV P W
Sbjct: 420 TQMQPAFSHA-----QQYRMG-RKLGVINANKVIVEQLKREPVHSLLAKHLPMLVKPEPW 473
Query: 469 TGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVL 526
TG+ G P VMR +G QR+ + L VF+ L+ LG WR+N V
Sbjct: 474 TGFSSGGFLKHPGRVMRVKNGDADQRNYADAAIDRGNLSTVFKGLNILGEQSWRINQPVF 533
Query: 527 SVLDRIWSCGGRLADLV-DRNDVPLPEKPETEDEAQLR-KWQWKVRNVKKENRERHSQRC 584
++ W+ G +A+L D+ + P +PET + R +W V+ V+ HSQRC
Sbjct: 534 DIMLEAWNSGDAIANLAPDKPKLDYPPEPETSSDPLERPRWVTAVKKVENSKSSFHSQRC 593
Query: 585 DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS 644
+L +AR ++D+ FY+PHNVDFRGRAYP+ PYLNH+G+D CRG++ F G+ LG S
Sbjct: 594 FQNFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMMFGTGKALGNS 652
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
GL WLK+HLAN+Y G DK S + R F ++D+I+DSA PL G+RWWL+AEDP+QCL
Sbjct: 653 GLRWLKVHLANVY--GFDKASLQEREEFASKNIDEIYDSATNPLGGKRWWLQAEDPWQCL 710
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A C+ AL S P +F+S++PVHQDG+CNGLQHYAALG D GA VNL ++PADV
Sbjct: 711 AACMEFKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGDRPADV 770
Query: 765 YSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQ 824
Y+ +A V I +D + +AK+L ++ RK+VKQTVMT+VYGVT+IGA+ Q
Sbjct: 771 YTAVADLVKESIAKD------LLAGQPKAKILNGKITRKVVKQTVMTNVYGVTFIGAKAQ 824
Query: 825 IKRRLKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECAKIIASEN 881
++++L + + + A+ V TAL MF+ A I WLG+CA I++
Sbjct: 825 VRKQLVAAHKDLPDNDEINPGTLASYVVTKIFTALSTMFKGAHDIQYWLGDCASRISNSL 884
Query: 882 QP----------------------------------VRWTTPLGLPVVQPYRKLGRHTVK 907
P V WTTPL LPVVQPYR V+
Sbjct: 885 TPEQIERIVAQASEQEGRPSKRAALALDEISQFKSSVIWTTPLNLPVVQPYRTHKSRLVR 944
Query: 908 TSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
T+LQ+L+L ++ V ++Q AFPPNF+HSLD +HM+++AV C +A L FA VHDS+
Sbjct: 945 TNLQLLSLSEPHRSDPVSSRKQLQAFPPNFIHSLDATHMLLSAVKCNEAKLAFAAVHDSF 1004
Query: 966 WTHACDVDEMNRILREKFVELY 987
WTHA D+D MN LR+ F+E++
Sbjct: 1005 WTHAADIDTMNTFLRDAFIEIH 1026
>gi|151940727|gb|EDN59114.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae YJM789]
Length = 1351
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 343/994 (34%), Positives = 513/994 (51%), Gaps = 95/994 (9%)
Query: 52 AKQAISLHLKKPFS---RAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILN 108
A A S +KKP R SF G S + + +D K + +D + G+ + +G L
Sbjct: 297 ASNASSDSIKKPSLDPLREVSFHG-STEVLSKDAEKLIAVDTI--GMRVIRHTLLGLSLT 353
Query: 109 HEDYMGRTSFGVLKNDNFWC--PRGYATVAEAVSSTDVEEDVSIVEE---IQELLQEMKK 163
E + F NDN P +++ ++ + +EE + L +
Sbjct: 354 PEQKEQISKFKFDANDNVLKMKPTKNDDNNNSINFFEIYNSLPTLEEKKAFESALNIFNQ 413
Query: 164 EEQREGEN-GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQK 222
+ Q+ EN + R R K R + IE K Y E+L + E+
Sbjct: 414 DRQKVLENRATEAARERWKHDFEEAKAR----GDISIEKNLNVKLWKWYNEMLPLVKEE- 468
Query: 223 LAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
+ + +SL L + ++ ++ ++ +++ Y PY + M VIT+ +L+
Sbjct: 469 ----INHCRSL-------LSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELL 517
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
L TGG R +A +G AIE E R + L+ E + + N +
Sbjct: 518 KLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLKS----------ESQAFRDVNKKSP 567
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SP 401
E +KL + + + ++ + + W Q RA++GS +I +L Q A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 402 ADQLADAPPD-IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPY 458
D + A PAF H + GSK GV++ + +++ L ER +
Sbjct: 619 VDPVTKAKVHGEAPAFAHGY-----QYHNGSK-LGVLKIHKTLIRQLNGERLIASVQPQL 672
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNT 517
+PMLV P W + G + + S ++RT + +Q +K ++ V++ L+ LG T
Sbjct: 673 LPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRT 732
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKE 575
W VN +V V+ ++W+ G D+ D V P P+ D + LR W+ +V+ + +
Sbjct: 733 PWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANK 792
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
S RCD KL +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F
Sbjct: 793 FSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIF 851
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
G+ LG SGL WLKIHL+NL+ G DKL + R+AFTE+HL DI DSA+ PL G RWW
Sbjct: 852 WHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWT 909
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A+ P+Q LA C L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 910 TADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNL 969
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
V +KP DVY+ +A V ++ A++ AK+L ++ RK+VKQTVMT+VYG
Sbjct: 970 VPSDKPQDVYAHVARLVQKRLEIAAEKGDE------NAKILKDKITRKVVKQTVMTNVYG 1023
Query: 816 VTYIGARDQIKRRLKERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
VTY+GA QI ++L +P+ + E S Y K +A+ E+F +A I WLGE
Sbjct: 1024 VTYVGATFQIAKQL----SPIFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGES 1079
Query: 874 AKIIASE-------------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
AK I+ N+P V WTTPLGLP+VQPYR+ + V+T+LQ + +
Sbjct: 1080 AKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFI 1139
Query: 916 QR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
V +RQ+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA D+D
Sbjct: 1140 SDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDID 1199
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
MN +LRE+F++L+E+ + L + F + + V
Sbjct: 1200 TMNVVLREQFIKLHEVDLVLRLKEEFDQRYKNYV 1233
>gi|256268895|gb|EEU04244.1| Rpo41p [Saccharomyces cerevisiae JAY291]
Length = 1351
Score = 527 bits (1358), Expect = e-146, Method: Compositional matrix adjust.
Identities = 343/994 (34%), Positives = 512/994 (51%), Gaps = 95/994 (9%)
Query: 52 AKQAISLHLKKPFS---RAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILN 108
A A S +KKP R SF G S + + +D K + +D + G+ + +G L
Sbjct: 297 ASNASSDSIKKPSLDPLREVSFHG-STEVLSKDAEKLIAVDTI--GMRVIRHTLLGLSLT 353
Query: 109 HEDYMGRTSFGVLKNDNFWC--PRGYATVAEAVSSTDVEEDVSIVEE---IQELLQEMKK 163
E + F NDN P +++ ++ + +EE + L +
Sbjct: 354 PEQKEQISKFKFDANDNVLKMKPTKNDDNNNSINFFEIYNSLPTLEEKKAFESALNIFNQ 413
Query: 164 EEQREGEN-GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQK 222
+ Q+ EN + R R K R + IE K Y E+L + E+
Sbjct: 414 DRQKVLENRATEAARERWKHDFEEAKAR----GDISIEKNLNVKLWKWYNEMLPLVKEE- 468
Query: 223 LAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
+ + +SL L + ++ ++ ++ +++ Y PY + M VIT+ +L+
Sbjct: 469 ----INHCRSL-------LSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELL 517
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
L TGG R +A +G AIE E R + L+ E + + N +
Sbjct: 518 KLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLKS----------ESQAFRDVNKKSP 567
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SP 401
E +KL + + + ++ + + W Q RA++GS +I +L Q A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 402 ADQLADAPPD-IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPY 458
D + A PAF H + GSK GV++ + +++ L ER +
Sbjct: 619 VDPVTKAKVHGEAPAFAHGY-----QYHNGSK-LGVLKIHKTLIRQLNGERLIASVQPQL 672
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNT 517
+PMLV P W + G + + S ++RT + +Q +K ++ V++ L+ LG T
Sbjct: 673 LPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRT 732
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKE 575
W VN +V V+ ++W+ G D+ D V P P+ D LR W+ +V+ + +
Sbjct: 733 PWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANK 792
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
S RCD KL +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F
Sbjct: 793 FSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIF 851
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
G+ LG SGL WLKIHL+NL+ G DKL + R+AFTE+HL DI DSA+ PL G RWW
Sbjct: 852 WHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWT 909
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A+ P+Q LA C L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 910 TADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNL 969
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
V +KP DVY+ +A V ++ A++ AK+L ++ RK+VKQTVMT+VYG
Sbjct: 970 VPSDKPQDVYAHVARLVQKRLEIAAEKGDE------NAKILKDKITRKVVKQTVMTNVYG 1023
Query: 816 VTYIGARDQIKRRLKERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
VTY+GA QI ++L +P+ + E S Y K +A+ E+F +A I WLGE
Sbjct: 1024 VTYVGATFQIAKQL----SPIFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGES 1079
Query: 874 AKIIASE-------------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
AK I+ N+P V WTTPLGLP+VQPYR+ + V+T+LQ + +
Sbjct: 1080 AKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFI 1139
Query: 916 QR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
V +RQ+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA D+D
Sbjct: 1140 SDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDID 1199
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
MN +LRE+F++L+E+ + L + F + + V
Sbjct: 1200 TMNVVLREQFIKLHEVDLVLRLKEEFDQRYKNYV 1233
>gi|259146153|emb|CAY79412.1| Rpo41p [Saccharomyces cerevisiae EC1118]
Length = 1351
Score = 527 bits (1358), Expect = e-146, Method: Compositional matrix adjust.
Identities = 343/994 (34%), Positives = 512/994 (51%), Gaps = 95/994 (9%)
Query: 52 AKQAISLHLKKPFS---RAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILN 108
A A S +KKP R SF G S + + +D K + +D + G+ + +G L
Sbjct: 297 ASNASSDSIKKPSLDPLREVSFHG-STEVLSKDAEKLIAVDTI--GMRVIRHTLLGLSLT 353
Query: 109 HEDYMGRTSFGVLKNDNFWC--PRGYATVAEAVSSTDVEEDVSIVEE---IQELLQEMKK 163
E + F NDN P +++ ++ + +EE + L +
Sbjct: 354 PEQKEQISKFKFDANDNVLKMKPTKNDDNNNSINFFEIYNSLPTLEEKKAFESALNIFNQ 413
Query: 164 EEQREGEN-GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQK 222
+ Q+ EN + R R K R + IE K Y E+L + E+
Sbjct: 414 DRQKVLENRATEAARERWKHDFEEAKAR----GDISIEKNLNVKLWKWYNEMLPLVKEE- 468
Query: 223 LAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
+ + +SL L + ++ ++ ++ +++ Y PY + M VIT+ +L+
Sbjct: 469 ----INHCRSL-------LSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELL 517
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
L TGG R +A +G AIE E R + L+ E + + N +
Sbjct: 518 KLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLKS----------ESQAFRDVNKKSP 567
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SP 401
E +KL + + + ++ + + W Q RA++GS +I +L Q A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 402 ADQLADAPPD-IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPY 458
D + A PAF H + GSK GV++ + +++ L ER +
Sbjct: 619 VDPVTKAKVHGEAPAFAHGY-----QYHNGSK-LGVLKIHKTLIRQLNGERLIASVQPQL 672
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNT 517
+PMLV P W + G + + S ++RT + +Q +K ++ V++ L+ LG T
Sbjct: 673 LPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRT 732
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKE 575
W VN +V V+ ++W+ G D+ D V P P+ D LR W+ +V+ + +
Sbjct: 733 PWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANK 792
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
S RCD KL +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F
Sbjct: 793 FSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIF 851
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
G+ LG SGL WLKIHL+NL+ G DKL + R+AFTE+HL DI DSA+ PL G RWW
Sbjct: 852 WHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWT 909
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A+ P+Q LA C L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 910 TADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNL 969
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
V +KP DVY+ +A V ++ A++ AK+L ++ RK+VKQTVMT+VYG
Sbjct: 970 VPSDKPQDVYAHVARLVQKRLEIAAEKGDE------NAKILKDKITRKVVKQTVMTNVYG 1023
Query: 816 VTYIGARDQIKRRLKERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
VTY+GA QI ++L +P+ + E S Y K +A+ E+F +A I WLGE
Sbjct: 1024 VTYVGATFQIAKQL----SPIFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGES 1079
Query: 874 AKIIASE-------------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
AK I+ N+P V WTTPLGLP+VQPYR+ + V+T+LQ + +
Sbjct: 1080 AKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFI 1139
Query: 916 QR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
V +RQ+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA D+D
Sbjct: 1140 SDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDID 1199
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
MN +LRE+F++L+E+ + L + F + + V
Sbjct: 1200 TMNVVLREQFIKLHEVDLVLRLKEEFDQRYKNYV 1233
>gi|164655881|ref|XP_001729069.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
gi|159102958|gb|EDP41855.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
Length = 1358
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 321/846 (37%), Positives = 463/846 (54%), Gaps = 104/846 (12%)
Query: 230 MKSLFLGWFEPLRDAIAKEQERC-RMAKHKVAYA------PYFDQLPADMMAVITMHKLM 282
+++ W++ L A+ K+ ER R +H VA + P+ LPA MA+I + ++M
Sbjct: 443 LQAWMWDWYQKLEVALRKDIERLGRQTRHAVASSMDAQLYPFLCLLPASKMAMIVILEIM 502
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
+ G + +A +G AIE E NK E ++
Sbjct: 503 RMQGISGVADGIKTTRALITVGKAIETEYSAVML-----------NKHPEIFVQARAA-- 549
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQD---DFKPWGQDARAKVGSRVIELLTQTAYIQ 399
+Q ++ + DL ++ L A + + ++ + W Q RA+VGS +++ L A +
Sbjct: 550 QQMLGKRSLIDLAARRDLKAWQERCREENIETNVPKWTQIIRARVGSFLVQHLLDVATVH 609
Query: 400 SPA-DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLER-TARHMVIP 457
A D+ + + PAF A + KK GVI N +V + L++ + R + P
Sbjct: 610 RKAYDRDGELWEEDQPAFYSAYEYIQ------GKKLGVIRLNEVVSQRLDKESVRETLHP 663
Query: 458 -YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLG 515
++PMLVPP W +D G ++ + + MR + +Q ++ + LE V LD LG
Sbjct: 664 RHLPMLVPPRPWLSHDSGGYYSMKTSAMRYKDSVEQSSYLRAASENHGLEVVLAGLDVLG 723
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADL--VDRNDVPLPEKPETEDEAQ------LRKWQW 567
NT W VN V V+ +IW+ G L DL + D P + +A+ LR+W
Sbjct: 724 NTAWNVNKEVFDVVLQIWNSGEALGDLPPAEMTDPEPERPPPDDIKAKGIYLQRLRQWN- 782
Query: 568 KVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSD 627
++ N HSQRCDI KL +AR +E FY+PHN+DFRGRAYP+ P+LNH+G+D
Sbjct: 783 ---TIRSSN---HSQRCDINYKLEIARSFLNER-FYFPHNMDFRGRAYPIPPHLNHIGND 835
Query: 628 LCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKP 687
LCRG+L+FAE + LG+ GL WL+IHLAN++ G DK S R FT +H DI DSA
Sbjct: 836 LCRGLLKFAEAKPLGEKGLRWLRIHLANVW--GYDKASFAEREQFTIDHEADIRDSATNA 893
Query: 688 LEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRD 746
G+RWWL+A+DP+QCLA CI LT+A PE F S +PVHQDG+CNGLQHYAALG D
Sbjct: 894 YHGKRWWLQADDPWQCLATCIELTKAWDYPDGPEAFPSQLPVHQDGTCNGLQHYAALGGD 953
Query: 747 TLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR-DPAVFPDALRAKLLLSQVDRKLV 805
GA VNL ++PADVY+G+A V+ + R A+ DP A+LL +V RK+V
Sbjct: 954 LQGAKQVNLRGGDRPADVYTGVAELVIEQLNRRAEEGDPT-------AQLLRGKVTRKVV 1006
Query: 806 KQTVMTSVYGVTYIGARDQIKRRLKERG-APMEEAELFGASCYAAKVTLTALGEMFQAAR 864
KQTVMT+VYGVT+IGA++Q+ R+L +RG P E E++ A+ Y AKV + +G++F A
Sbjct: 1007 KQTVMTTVYGVTFIGAKNQVMRQLVDRGDTPAE--EVWTAASYLAKVIMDCIGDLFSGAN 1064
Query: 865 GIMSWLGECAKIIASENQPVR--------------------------------------- 885
I WL A++IA P R
Sbjct: 1065 MIQDWLTITARMIAKSIPPERVPYAQMKVTRKGSKADPEAHTKRPSVTSREGREQMTSVI 1124
Query: 886 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE--KVMVKRQRTAFPPNFVHSLDGSH 943
WT+ LGLPVVQPYR++ +H + T++Q + ++ + +V +Q +AFPPNF+HSLD +H
Sbjct: 1125 WTSALGLPVVQPYRRIKKHQITTAVQSVYIRDPNQNFEVNTSKQASAFPPNFIHSLDATH 1184
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
M +TA+ C AGL FA VHDSYWTHACD+D M+ I+R+ FV L+ I L D F + +
Sbjct: 1185 MFLTALECHSAGLVFASVHDSYWTHACDIDTMSDIIRDTFVRLHSQDILVRLRDEFLQRY 1244
Query: 1004 PKLVFP 1009
P
Sbjct: 1245 KGYKVP 1250
>gi|190406539|gb|EDV09806.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae RM11-1a]
Length = 1351
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 343/994 (34%), Positives = 512/994 (51%), Gaps = 95/994 (9%)
Query: 52 AKQAISLHLKKPFS---RAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILN 108
A A S +KKP R SF G S + + +D K + +D + G+ + +G L
Sbjct: 297 ASNASSDSIKKPSLDPLREVSFHG-STEVLSKDAEKLIAVDTI--GMRVIRHTLLGLSLT 353
Query: 109 HEDYMGRTSFGVLKNDNFWC--PRGYATVAEAVSSTDVEEDVSIVEE---IQELLQEMKK 163
E + F NDN P +++ ++ + +EE + L +
Sbjct: 354 PEQKEQISKFKFDANDNVLKMKPTKNDDNNNSINFFEIYNSLPTLEEKKAFESALNIFNQ 413
Query: 164 EEQREGEN-GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQK 222
+ Q+ EN + R R K R + IE K Y E+L + E+
Sbjct: 414 DRQKVLENRATEAARERWKHDFEEAKAR----GDISIEKNLNVKLWKWYNEMLPLVKEE- 468
Query: 223 LAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
+ + +SL L + ++ ++ ++ +++ Y PY + M VIT+ +L+
Sbjct: 469 ----INHCRSL-------LSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELL 517
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
L TGG R +A +G AIE E R + L+ E + + N +
Sbjct: 518 KLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLKS----------ESQAFRDVNKKSP 567
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SP 401
E +KL + + + ++ + + W Q RA++GS +I +L Q A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 402 ADQLADAPPD-IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPY 458
D + A PAF H + GSK GV++ + +++ L ER +
Sbjct: 619 VDPVTKAKVHGEAPAFAHGY-----QYHNGSK-LGVLKIHKTLIRQLNGERLIASVQPQL 672
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNT 517
+PMLV P W + G + + S ++RT + +Q +K ++ V++ L+ LG T
Sbjct: 673 LPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRT 732
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKE 575
W VN +V V+ ++W+ G D+ D V P P+ D LR W+ +V+ + +
Sbjct: 733 PWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANK 792
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
S RCD KL +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F
Sbjct: 793 FSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIF 851
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
G+ LG SGL WLKIHL+NL+ G DKL + R+AFTE+HL DI DSA+ PL G RWW
Sbjct: 852 WHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWT 909
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A+ P+Q LA C L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 910 TADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNL 969
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
V +KP DVY+ +A V ++ A++ AK+L ++ RK+VKQTVMT+VYG
Sbjct: 970 VPSDKPQDVYAHVARLVQKRLEIAAEKGDE------NAKILKDKITRKVVKQTVMTNVYG 1023
Query: 816 VTYIGARDQIKRRLKERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
VTY+GA QI ++L +P+ + E S Y K +A+ E+F +A I WLGE
Sbjct: 1024 VTYVGATFQIAKQL----SPIFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGES 1079
Query: 874 AKIIASE-------------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
AK I+ N+P V WTTPLGLP+VQPYR+ + V+T+LQ + +
Sbjct: 1080 AKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFI 1139
Query: 916 QR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
V +RQ+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA D+D
Sbjct: 1140 SDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDID 1199
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
MN +LRE+F++L+E+ + L + F + + V
Sbjct: 1200 TMNVVLREQFIKLHEVDLVLRLKEEFDQRYKNYV 1233
>gi|365765907|gb|EHN07411.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1351
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 343/994 (34%), Positives = 512/994 (51%), Gaps = 95/994 (9%)
Query: 52 AKQAISLHLKKPFS---RAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILN 108
A A S +KKP R SF G S + + +D K + +D + G+ + +G L
Sbjct: 297 ASNASSDSIKKPSLDPLREVSFHG-STEVLSKDAEKLIAVDTI--GMRVIRHTLLGLSLT 353
Query: 109 HEDYMGRTSFGVLKNDNFWC--PRGYATVAEAVSSTDVEEDVSIVEE---IQELLQEMKK 163
E + F NDN P +++ ++ + +EE + L +
Sbjct: 354 PEQKEQISKFKFDANDNVLKMKPTKNDDNNNSINFFEIYNSLPTLEEKKAFESALNIFNQ 413
Query: 164 EEQREGEN-GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQK 222
+ Q+ EN + R R K R + IE K Y E+L + E+
Sbjct: 414 DRQKVLENRATEAARERWKHDFEEAKAR----GDISIEKNLNVKLWKWYNEMLPLVKEE- 468
Query: 223 LAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
+ + +SL L + ++ ++ ++ +++ Y PY + M VIT+ +L+
Sbjct: 469 ----INHCRSL-------LSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELL 517
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
L TGG R +A +G AIE E R + L+ E + + N +
Sbjct: 518 KLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLKS----------ESQAFRDVNKKSP 567
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SP 401
E +KL + + + ++ + + W Q RA++GS +I +L Q A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 402 ADQLADAPPD-IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPY 458
D + A PAF H + GSK GV++ + +++ L ER +
Sbjct: 619 VDPVTKAKVHGEAPAFAHGY-----QYHNGSK-LGVLKIHKTLIRQLNGERLIASVQPQL 672
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNT 517
+PMLV P W + G + + S ++RT + +Q +K ++ V++ L+ LG T
Sbjct: 673 LPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRT 732
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKE 575
W VN +V V+ ++W+ G D+ D V P P+ D LR W+ +V+ + +
Sbjct: 733 PWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANK 792
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
S RCD KL +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F
Sbjct: 793 FSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIF 851
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
G+ LG SGL WLKIHL+NL+ G DKL + R+AFTE+HL DI DSA+ PL G RWW
Sbjct: 852 WHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWT 909
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A+ P+Q LA C L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 910 TADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNL 969
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
V +KP DVY+ +A V I+ +++ AK+L ++ RK+VKQTVMT+VYG
Sbjct: 970 VPSDKPQDVYAHVARLVTKKIRNCSRKGDE------NAKILKDKITRKVVKQTVMTNVYG 1023
Query: 816 VTYIGARDQIKRRLKERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
VTY+GA QI ++L +P+ + E S Y K +A+ E+F +A I WLGE
Sbjct: 1024 VTYVGATFQIAKQL----SPIFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGES 1079
Query: 874 AKIIASE-------------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
AK I+ N+P V WTTPLGLP+VQPYR+ + V+T+LQ + +
Sbjct: 1080 AKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFI 1139
Query: 916 QR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
V +RQ+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA D+D
Sbjct: 1140 SDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDID 1199
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
MN +LRE+F++L+E+ + L + F + + V
Sbjct: 1200 TMNVVLREQFIKLHEVDLVLRLKEEFDQRYKNYV 1233
>gi|452824377|gb|EME31380.1| DNA-directed RNA polymerase, mitochondrial [Galdieria sulphuraria]
Length = 1125
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 325/887 (36%), Positives = 489/887 (55%), Gaps = 86/887 (9%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMA 255
++++E +++ + +R LL ++ L + L L W PL AI +EQ+R ++
Sbjct: 273 ELRLEFACLQESLDRFRNLLETAVKRGDIGWLSPAQRLILSWLSPLAFAIKREQQRLKVK 332
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI-IGDAIEQEVRIH 314
+ +L +A+IT+ + + L + E + C+ +G A++ +
Sbjct: 333 ISLTKDESHLLRLEPAKLALITIQETLRLTVPRKE---GYPYLSLCLEVGKAVQTQCNAE 389
Query: 315 KFLEKTKKKNE-----TKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG 369
+ LE+ +KK + + E+++ D +NT TE + ++ + +L +++++K
Sbjct: 390 E-LERLRKKLQYEQVHQETMENKQVDNTNTTLTESSESKESSNSF--RIRLHQLKKLLKR 446
Query: 370 QDDFKP-------------------WGQDARAKVGSRVIELLTQTAYIQSPADQL----- 405
++ K W + +VGS ++++L + A P Q+
Sbjct: 447 NENDKNGHRPYINLFAYRLTGNAAFWDKLTTLRVGSYLVDMLLKNA----PTQQVLVRTK 502
Query: 406 ADAPPDIFPAFTHALRTVSKETKG-GSKKYGVIECNPLVLKGLERTARHMVIPYM----- 459
A + AF H K +G G+K G++ C +V L +R + P++
Sbjct: 503 ASSDSQFVSAFWH------KTVRGNGNKLQGLVGCRDIVYDIL---SRDLSNPFLNPLPR 553
Query: 460 --PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNT 517
PM+V P WTG G + + S +MR + + + RT L V+E L+ LG T
Sbjct: 554 LRPMVVVPKPWTGPKTGGYLRIRSDLMRCEHSHRSQWNALRTA--NLSKVYEGLNALGAT 611
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE--------KPETEDEAQLRKWQWKV 569
W+VN ++L V + +W GG +A LV+R + +P+ P E Q+R ++
Sbjct: 612 PWKVNTKILEVAEELWRRGGGIAGLVNRERIDVPKINFNDFRLLPRNE-MTQIRG---EI 667
Query: 570 RNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
R KK ERH+ C E+ L AR+ + FY PHN+DFRGRAYP+ L+H+ SDL
Sbjct: 668 REAKKAVAERHALTCQTEIILQEAREFAKYDVFYLPHNMDFRGRAYPIPSTLHHMSSDLH 727
Query: 630 RGILEFAE-GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
RG+L FA G+ LG+ G++WLK+H+ANL G DK + E R+ +TENH +I A PL
Sbjct: 728 RGLLMFASPGKPLGERGVYWLKVHIANL--AGQDKATFEDRVRWTENHSLEIIQVAQDPL 785
Query: 689 E--GRRWWLKAEDPFQCLAVCINLTEAL-RSSSPETFISHIPVHQDGSCNGLQHYAALGR 745
+ WW EDPFQ LA C+ A + +S + S +P+ DGSCNGLQHYAAL R
Sbjct: 786 DPNNLEWWSTREDPFQFLAACVEFANAASQGNSMSHYCSSVPIQMDGSCNGLQHYAALAR 845
Query: 746 DTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLV 805
D GA VNL+ +KP DVYS + RV V++++DA+R AKL L + RK+V
Sbjct: 846 DCEGAFKVNLLPCDKPQDVYSAVCDRVRVMVEKDAERGLE------EAKLALKCLSRKVV 899
Query: 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARG 865
KQTVMTSVYGVT IGAR QI+ RL+E +E+ +F S Y A TL ++G +F+ A
Sbjct: 900 KQTVMTSVYGVTLIGARLQIENRLRE-AKLIEKEWIFKVSSYLASRTLESIGNLFEVADR 958
Query: 866 IMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV- 924
M WL ECA+ IA Q V W TPLGLP+ QPYR R VKT++QI+++Q E + +
Sbjct: 959 TMEWLSECAQKIAHTKQAVSWITPLGLPIYQPYRSKVRLDVKTAMQIVSMQLYDESLPIE 1018
Query: 925 -KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
++Q TAFPPN++HSLD SHM+MTA AC K G+ FA VHDS+WT A DVD MNRILRE F
Sbjct: 1019 KRKQMTAFPPNYIHSLDSSHMLMTASACVKEGMYFAAVHDSFWTSAADVDRMNRILRETF 1078
Query: 984 VELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
V L+ + L + F+ +P++ F P PERG D++ VL +P+FF+
Sbjct: 1079 VGLHSNNLLWQLYEYFRSRYPQVDFRPPPERGTLDIQSVLDAPFFFD 1125
>gi|14318482|ref|NP_116617.1| Rpo41p [Saccharomyces cerevisiae S288c]
gi|308153492|sp|P13433.2|RPOM_YEAST RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|836718|dbj|BAA09203.1| mithochondrial DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|285811859|tpg|DAA12404.1| TPA: Rpo41p [Saccharomyces cerevisiae S288c]
gi|349577881|dbj|GAA23048.1| K7_Rpo41p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299635|gb|EIW10728.1| Rpo41p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1589360|prf||2210408E RNA polymerase
Length = 1351
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 315/860 (36%), Positives = 459/860 (53%), Gaps = 88/860 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E A E A ++ D E K ++ K+L W+ + + +E
Sbjct: 415 RQKVLENRATEAARERWKH---DFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINH 471
Query: 252 CR---------------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARV 296
CR + +++ Y PY + M VIT+ +L+ L TGG R
Sbjct: 472 CRSLLSEKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRT 531
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK 356
+A +G AIE E R + L+ E + + N + E +KL + + +
Sbjct: 532 ARAVISVGKAIEMEFRSEQVLKS----------ESQAFRDVNKKSPEFKKLVQNAKSVFR 581
Query: 357 KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SPADQLADAPPD-IFP 414
++ + + W Q RA++GS +I +L Q A + D + A P
Sbjct: 582 SSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP 632
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYD 472
AF H + GSK GV++ + +++ L ER + +PMLV P W +
Sbjct: 633 AFAHGY-----QYHNGSK-LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWR 686
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
G + + S ++RT + +Q +K ++ V++ L+ LG T W VN +V V+ +
Sbjct: 687 SGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQ 746
Query: 532 IWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
+W+ G D+ D V P P+ D + LR W+ +V+ + + S RCD K
Sbjct: 747 VWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYK 806
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F G+ LG SGL WL
Sbjct: 807 LEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWL 865
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIHL+NL+ G DKL + R+AFTE+HL DI DSA+ PL G RWW A+ P+Q LA C
Sbjct: 866 KIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFE 923
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNLV +KP DVY+ +A
Sbjct: 924 LNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVA 983
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
V ++ A++ AK+L ++ RK+VKQTVMT+VYGVTY+GA QI ++L
Sbjct: 984 RLVQKRLEIAAEKGDE------NAKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQL 1037
Query: 830 KERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------- 880
+P+ + E S Y K +A+ E+F +A I WLGE AK I+
Sbjct: 1038 ----SPIFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVDE 1093
Query: 881 ------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQ 927
N+P V WTTPLGLP+VQPYR+ + V+T+LQ + + V +RQ
Sbjct: 1094 KSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQ 1153
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA D+D MN +LRE+F++L+
Sbjct: 1154 KAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLH 1213
Query: 988 EMPIFENLLDSFQKSFPKLV 1007
E+ + L + F + + V
Sbjct: 1214 EVDLVLRLKEEFDQRYKNYV 1233
>gi|296424611|ref|XP_002841841.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638090|emb|CAZ86032.1| unnamed protein product [Tuber melanosporum]
Length = 1416
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 319/860 (37%), Positives = 469/860 (54%), Gaps = 84/860 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
RQ +E A++ A ++ + E+ + + SL W + L I +E +R +
Sbjct: 355 RQKLLEEHAFDSARERWKRDFESLSERGVIKQDAEINSLLWEWHQALVPLIHEELKRVQH 414
Query: 255 AKH----------KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
A+ + Y P+ + + +A IT+ +L+ G + +A +G
Sbjct: 415 AEESGTKAAGAVDRCFYGPFMRVIEPEKLAAITIIELLRTHTLNGVGAGLKASRAVLQLG 474
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL---RKKVTDLIKKQKLP 361
+E E + + K+ EG +N E E + R +LI K K
Sbjct: 475 REVELEYQAQEVA-----------KQRGEGFFANMSKAELETIFRDRSAFRNLISKSKSA 523
Query: 362 AVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA--------DQLADAPPDIF 413
+ ++ W + K+G +I +L A I A + ++
Sbjct: 524 SDLDF----EEIPEWPNTVKVKLGGVLISMLIHVARIPVEAAVPGLTEGTESSEKIVQHL 579
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNPLVLK--GLERTARHMVIPYMPMLVPPVKWTGY 471
PAF H E + G +K GV++ +P ++K G + + +PM+V P+ WT +
Sbjct: 580 PAFQHCY-----EYQRG-RKLGVVKLHPELVKRLGTDDLNFTAIGKSLPMVVRPLPWTDW 633
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLD 530
D+G +F+ S V+R + +QR VK ++ L+ +F LD LG T WR+N RV V+
Sbjct: 634 DEGGYFYTRSKVVRIRESVEQRQYVKAAAERGHLDHLFAGLDVLGRTAWRINRRVFDVVL 693
Query: 531 RIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRER---HSQRCDI 586
+W+ A + N D+ P +PE + ++R W+W R +K+ N R HS RCD+
Sbjct: 694 EVWNQEKAFAKIPALNPDINFPLEPEPNADPKVR-WEW-AREMKRVNTARKNNHSTRCDV 751
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
K+ +AR EE FY+PHN+DFRGRAYP+ P LNH+G+DL RG+L F+E + +G++GL
Sbjct: 752 NFKVEIARAFLFEE-FYFPHNIDFRGRAYPIPPNLNHIGNDLSRGLLMFSEAKEVGETGL 810
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
W+KIHLANL G DK S R+AFTE ++++I DSA+ PL G RWWLK++DP+Q LA
Sbjct: 811 RWMKIHLANL--AGYDKASFSQRVAFTEENIENIHDSAENPLTGNRWWLKSDDPWQLLAS 868
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C L EAL ++P + HIPV QDG+CNGLQHYAALG D GA VNL + P DVY+
Sbjct: 869 CFALNEALSLNNPHEYKCHIPVAQDGTCNGLQHYAALGGDVAGARQVNLEPSDLPQDVYT 928
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
G+A V ++ DA+R P A+ K L V RK+VKQTVMT+VYGVT+IGAR+QI+
Sbjct: 929 GVAELVKASVELDAKRG---LPAAVALKDL---VTRKVVKQTVMTNVYGVTFIGARNQIE 982
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP--- 883
+LK + +++ ++ S Y K ++ EMF A I WL CAK I+ +P
Sbjct: 983 NQLKCIES-LDQKDIPALSLYLTKKVFDSIQEMFTGASAIQDWLVTCAKRISRSVRPNQL 1041
Query: 884 ------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE--TEKVM 923
V WTTPL LPVVQPYR++ + T+LQ + + +KV
Sbjct: 1042 EHLKDPKTGEDSVHFMTSVVWTTPLRLPVVQPYRQVASAAISTNLQTVYINDPYVIDKVD 1101
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
++Q TAFPPNF+HSLD SHM+++A+ C +GLTFA VHDS+WTH DVDEMNRILR+ F
Sbjct: 1102 SRKQMTAFPPNFIHSLDASHMLLSALNCDASGLTFASVHDSFWTHPSDVDEMNRILRDSF 1161
Query: 984 VELYEMPIFENLLDSFQKSF 1003
V L+ I ENL F++ +
Sbjct: 1162 VALHGKDIIENLKAEFEERY 1181
>gi|340960508|gb|EGS21689.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1394
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 321/872 (36%), Positives = 476/872 (54%), Gaps = 88/872 (10%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWFEPLRDAIAKEQERCR 253
Q ++E + E A ++RE + L P + P + S W + L IA+EQ +
Sbjct: 355 QSRLERDVLEAALQKWREDNESLASMGLNPQISAPSLSSKLYQWHQALERRIAEEQAKVE 414
Query: 254 MAKH----------KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+++ + Y P Q A +A T+ ++ LL G A +
Sbjct: 415 ASENVPKKSAEDLDRCLYGPLLLQGSATRLAAATIISILSLLSLHGADKGVAASLAVQQV 474
Query: 304 GDAIEQEVRIHKFLEKTKK--KNETKNKEDE-------EGDESNTVTTEQEKLRKKVTDL 354
E+++R + EKTKK K++T+ ++ + +G+ S TT++++L L
Sbjct: 475 AKVAEEDIRF-QIAEKTKKLPKHQTELQKRKARRLIRVKGNGS-LKTTDKKQLGVATLPL 532
Query: 355 IKKQKL-PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ--LADAPPD 411
++ PA+ + W RAKVG+ ++ + +TA I D +
Sbjct: 533 ATTGEMAPAITENTR-------WPTAIRAKVGALLLTAMMETAKIMVVRDHPVTKEKVHQ 585
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTG 470
+ PAF+HA++ KG KK G+I+ NP +++ L+R R ++ ++PMLV P WT
Sbjct: 586 LQPAFSHAMQL----RKG--KKVGIIQANPELVEILKREPRAELLARHLPMLVEPEPWTK 639
Query: 471 YDKGAHFFLPSYVMR--THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
+DKG S ++R H +Q+ + +E + LD LG T WR+N +V V
Sbjct: 640 FDKGGFLECQSPLIRLKNHEIEQKIYAEAAIERGDMEQMMRGLDVLGKTAWRINRKVFDV 699
Query: 529 LDRIWSCGGRLADLVDRN-DVPLPEKPETEDEA-QLRKWQWKVRNVKKENRERHSQRCDI 586
+ +W+ G A++ + ++P+P +P++ D+ + R W +V+ ++ E HS RC +
Sbjct: 700 MLTVWNEGIAFANIPALHPNIPIPPEPDSSDDPMKKRIWMRQVKAIQNEKSGMHSVRCFM 759
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
+L +AR D+ FY+PHN+DFRGRAYP+ PYLNH+G+D RG+L FA+G+ LG++GL
Sbjct: 760 NFQLEIARAFIDQT-FYFPHNLDFRGRAYPLPPYLNHMGADHMRGMLLFAKGKPLGENGL 818
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
WLKIHLAN+Y G DK S + R F +++L +I DSA PL G+RWWL+ EDP+QCLA
Sbjct: 819 RWLKIHLANVY--GYDKASLDDREKFADDNLANIMDSASNPLGGKRWWLQGEDPWQCLAT 876
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C L AL+S P F+SH+PVHQDG+CNGLQHYAALG DT GA VNL+ EKPADVYS
Sbjct: 877 CFELAAALQSPDPTQFVSHLPVHQDGTCNGLQHYAALGGDTWGAQQVNLIPGEKPADVYS 936
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A V ++ +DA AK L ++ RK+VKQTVMT+VYGVT++GA+ Q++
Sbjct: 937 AVAQLVQEMVTKDAAAGNEF------AKALDGKITRKVVKQTVMTNVYGVTFVGAKRQVQ 990
Query: 827 RRLKERGAPMEEAELFGA---SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP 883
++L +E S Y A ALG MF A I SWLGE + P
Sbjct: 991 KQLDALYPNLESQTGCSTSILSSYMATKIFAALGTMFSGAYAIQSWLGEIGDRVCRAITP 1050
Query: 884 ------------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
+ WTTPL +PVVQPYRK G V T LQ L
Sbjct: 1051 EQLNRIEAEATGESKKKFTDAELNNTFRNTIVWTTPLRMPVVQPYRKSGTRVVPTCLQDL 1110
Query: 914 TLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACD 971
LQ + V ++Q AFPPNF+HSLD SHMM++A+ C + GLTFA VHDS+WTHA D
Sbjct: 1111 ALQVSDRDDPVNRRKQLQAFPPNFIHSLDASHMMLSALECHELGLTFAAVHDSFWTHAAD 1170
Query: 972 VDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
VD+M++++RE F+ ++ + L F+ +
Sbjct: 1171 VDKMSKVIRESFIRIHSEDVIGRLKCEFEARY 1202
>gi|443897435|dbj|GAC74776.1| mitochondrial/chloroplast DNA-directed RNA polymerase RPO41
[Pseudozyma antarctica T-34]
Length = 1509
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 312/839 (37%), Positives = 457/839 (54%), Gaps = 94/839 (11%)
Query: 237 WFEPLRDAIAKEQERC------------RMAKHKVAYAPYFDQLPADMMAVITMHKLMGL 284
W+ L+ A+ K+ +R M + P+ LP +A+IT+ +LM +
Sbjct: 556 WYNKLQTALNKDLDRLDSDLKNDVHTSKAMLPIEQQMLPFLRLLPVSKLALITVLELMRM 615
Query: 285 LMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQ 344
GG + +A +G AIE E + + K K + + V
Sbjct: 616 SGNGGVSDGMKTTRALLQVGRAIETEYH-SEVIRKNPKIFQNAQAAQAALKKRGLVDF-- 672
Query: 345 EKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA-D 403
R+++ + K+Q+ V + W Q RA+VGS +++ L Q A + A D
Sbjct: 673 -AARREIKEWQKQQEEQGVISSIPK------WTQITRARVGSYLVQHLMQVATVNRKATD 725
Query: 404 QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPM 461
+ + PAF + + G KK GVI+ N +V K L++ + + ++PM
Sbjct: 726 RDGILWEEDQPAFYSTYQYL------GGKKLGVIKLNEVVAKRLDKDSISETLHPRHLPM 779
Query: 462 LVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWR 520
LVPP WT +D G ++ + MR + +Q ++ + L+ V ALD LGNT W+
Sbjct: 780 LVPPKPWTSHDSGGYYSVRQSAMRFKDSAEQGSYLRAASDNGDLDTVLAALDVLGNTSWK 839
Query: 521 VNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRER 579
+N + V+ +W+ G +AD+ + P P KP+ D ++ ++ +K+ N++R
Sbjct: 840 INKPIFDVMLEVWNSGKDIADMPPMEMETPEPVKPDNYDH-DIKARSVYLQRLKQWNQQR 898
Query: 580 ---HSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
HSQRCD+ KL +AR E FY+PHN+DFRGRAYPM P+LNH+G+DLCRG+L FA
Sbjct: 899 SSNHSQRCDVNYKLEIARAYLGER-FYFPHNMDFRGRAYPMPPHLNHIGNDLCRGLLMFA 957
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+ + LGK+GL WL+IH++N++ G DK S R F +H DI DS ++PL+G RWWLK
Sbjct: 958 DSKPLGKAGLRWLRIHISNVF--GYDKASFGEREQFAIDHEADIRDSVERPLDGNRWWLK 1015
Query: 697 AEDPFQCLAVCINLTEAL-RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A+DP+QCLA C+ L AL PE + S +PVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 1016 ADDPWQCLAACMELRAALDHPEGPEAYESCLPVHQDGTCNGLQHYAALGGDLAGAKQVNL 1075
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
++PADVYSG+A V+ ++ +A + AK+L +V RK+VKQTVMT+VYG
Sbjct: 1076 SGGDRPADVYSGVADLVIKVLDEEAAKGDRT------AKILQGKVTRKVVKQTVMTTVYG 1129
Query: 816 VTYIGARDQIKRRLKERG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
VT+IGA++Q+ R+L +RG P E +LF A+ + AKV ++ +G +F A+ I WL A
Sbjct: 1130 VTFIGAKNQVMRQLADRGDVPAE--DLFNAASFLAKVIMSCIGNLFSGAQKIQDWLSFSA 1187
Query: 875 KIIA------------------------------------------SENQPVRWTTPLGL 892
K+IA + V WTT LGL
Sbjct: 1188 KVIAKSIPGQRVEEATRPYLPNEANLRRADVRGFSRDPAKADRIAKEQMTSVIWTTALGL 1247
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRE--TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
PVVQPYRK + V TS+Q + + +V +Q +AFPPNF+HSLD +HM++TA+
Sbjct: 1248 PVVQPYRKAKKRQVSTSMQTVFINDPLLNAEVSPAKQASAFPPNFIHSLDATHMILTALE 1307
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
C AGLTFA VHDSYWTHA D+D M+ ++RE FV L+ I L + F + + P
Sbjct: 1308 CHAAGLTFASVHDSYWTHAADIDTMSDMIRETFVRLHSQDILYRLREEFLQRYEGYKVP 1366
>gi|172490|gb|AAA35007.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae]
Length = 1351
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 343/994 (34%), Positives = 513/994 (51%), Gaps = 95/994 (9%)
Query: 52 AKQAISLHLKKPFS---RAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILN 108
A A S +KKP R SF G S + + +D K + +D + G+ + +G L
Sbjct: 297 ASNASSDSIKKPSLDPLREVSFHG-STEVLSKDAEKLIAVDTI--GMRVIRHTLLGLSLT 353
Query: 109 HEDYMGRTSFGVLKNDNFWC--PRGYATVAEAVSSTDVEEDVSIVEE---IQELLQEMKK 163
E + F NDN P +++ ++ + +EE + L +
Sbjct: 354 PEQKEQISKFKFDANDNVLKMKPTKNDDNNNSINFFEIYNSLPTLEEKKAFESALNIFNQ 413
Query: 164 EEQREGEN-GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQK 222
+ Q+ EN + R R K R + IE K Y E+L + E+
Sbjct: 414 DRQKVLENRATEAARERWKHDFEEAKAR----GDISIEKNLNVKLWKWYNEMLPLVKEE- 468
Query: 223 LAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
+ + +SL L + ++ ++ ++ +++ Y PY + M VIT+ +L+
Sbjct: 469 ----INHCRSL-------LSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELL 517
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
L TGG R +A +G AIE E R + L+ E + + N +
Sbjct: 518 KLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLKS----------ESQAFRDVNKKSP 567
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SP 401
E +KL + + + ++ + + W Q RA++GS +I +L Q A +
Sbjct: 568 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 618
Query: 402 ADQLADAPPD-IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPY 458
D + A PAF H + GSK GV++ + +++ L ER +
Sbjct: 619 VDPVTKAKVHGEAPAFAHGY-----QYHNGSK-LGVLKIHKTLIRQLNGERLIASVQPQL 672
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNT 517
+PMLV P W + G + + S ++RT + +Q +K ++ V++ L+ LG T
Sbjct: 673 LPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRT 732
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKE 575
W VN +V V+ ++W+ G D+ D V P P+ D + LR W+ +V+ + +
Sbjct: 733 PWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANK 792
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
S RCD KL +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F
Sbjct: 793 FSSDRSNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIF 851
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
G+ LG SGL WLKIHL+NL+ G DKL + R+AFTE+HL DI DSA+K L G RWW
Sbjct: 852 WHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAEKSLTGDRWWT 909
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A+ P+Q LA C L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 910 TADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNL 969
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
V +KP DVY+ +A V ++ A++ AK+L ++ RK+VKQTVMT+VYG
Sbjct: 970 VPSDKPQDVYAHVARLVQKRLEIAAEKGDE------NAKILKDKITRKVVKQTVMTNVYG 1023
Query: 816 VTYIGARDQIKRRLKERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
VTY+GA QI ++L +P+ + E S Y K +A+ E+F +A I WLGE
Sbjct: 1024 VTYVGATFQIAKQL----SPIFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGES 1079
Query: 874 AKIIASE-------------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
AK I+ N+P V WTTPLGLP+VQPYR+ + V+T+LQ + +
Sbjct: 1080 AKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFI 1139
Query: 916 QR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
V +RQ+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA D+D
Sbjct: 1140 SDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDID 1199
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
MN +LRE+F++L+E+ + L + F + + V
Sbjct: 1200 TMNVVLREQFIKLHEVDLVLRLKEEFDQRYKNYV 1233
>gi|392575571|gb|EIW68704.1| hypothetical protein TREMEDRAFT_69156 [Tremella mesenterica DSM 1558]
Length = 1229
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 302/802 (37%), Positives = 438/802 (54%), Gaps = 82/802 (10%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLE----- 318
Y LP + +A+IT+ ++M + +GG + ++ +G A+E E R
Sbjct: 293 YLTVLPPEKLALITILEVMRMSGSGGIVDGMKALRGIMAVGKAVETEYRAETIKSVGGVD 352
Query: 319 -----KTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF 373
KT K N V + + K + +K L AV +
Sbjct: 353 SPLWLKTIDPQTQKPSRQLISQVWNQVGQSRHRPNKSTSQDLKDTGLEAV---------W 403
Query: 374 KP-WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF---PAFTHALRTVSKETKG 429
P W A +G +++ L TA + A D I PAF H +
Sbjct: 404 TPAWSPLVHASLGGFLVDALLSTAKVVREATD-PDTGEKIVEEQPAFAHEYEYLY----- 457
Query: 430 GSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMR-T 486
KK GVI+ NP+V L R + H+VI ++PMLVPP WT D G + VMR
Sbjct: 458 -GKKLGVIKLNPVVAARLARDSLHVVIHPRHLPMLVPPKPWTSQDDGGYLVHRVPVMRYK 516
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
A+QQ K LEPVF LD L T W +N +V V+ W+ G +ADL
Sbjct: 517 ESAEQQIYLRKAFEAGHLEPVFHGLDVLSGTPWTINRKVFDVVLSAWNSGDAIADLPASQ 576
Query: 547 -----DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG 601
D P+P P+ + + ++R+V + R+ H++RC L +AR ++
Sbjct: 577 EKAQYDFPVPPDPDNSEPQDRTSYVVRIRSVLAQQRKDHAERCKFNYNLEIARSYLNDT- 635
Query: 602 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGV 661
FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L+F E RTLG++GL WL+IHLAN+Y G
Sbjct: 636 FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLQFGEKRTLGRAGLKWLQIHLANVY--GY 693
Query: 662 DKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
DK S E R F +H +IF+SAD PL+G+RWWL+AEDP+QCLA C +L ALRS +PE
Sbjct: 694 DKASFEERAQFAVDHEKEIFNSADNPLDGQRWWLQAEDPWQCLASCFDLAAALRSENPEA 753
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
+ S +P+HQDG+CNG+QHYAALG D GA AVNL ++PAD+Y+G+A V I+ D +
Sbjct: 754 YESALPIHQDGTCNGMQHYAALGGDVNGARAVNLENGDRPADIYTGVADLVNKAIEADKK 813
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL 841
+ A+ + ++RK+VKQTVMT+VYGVT++GAR+QI ++L R + +L
Sbjct: 814 VGVPM------AQFITEPLERKVVKQTVMTTVYGVTFVGAREQIAKQLSLR-TDIPPGQL 866
Query: 842 FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR---------------- 885
+ S Y AK L+++G++F A+ IM +L CA++I+ P R
Sbjct: 867 YQLSIYVAKAVLSSIGDLFVGAKHIMEFLTICARLISRSIPPSRVAEASIRLHKTDSKGR 926
Query: 886 ----------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQ 927
WTTPLGLPVVQPYRK + V T+LQ + + +V ++Q
Sbjct: 927 VRLYDRLPKELMTSVIWTTPLGLPVVQPYRKPTKKQVMTALQSVYISDPNAPAEVSPQKQ 986
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+AFPPNF+HSLD +HM++TA C++ G+TFA VHDSYWTHA V+ M+ ++R+ F++L+
Sbjct: 987 ASAFPPNFIHSLDATHMLLTAYKCKQNGITFASVHDSYWTHAASVEHMSELIRDTFIDLH 1046
Query: 988 EMPIFENLLDSFQKSFPKLVFP 1009
+ NL + F + + + P
Sbjct: 1047 SQDLIGNLREEFIERYGDHMIP 1068
>gi|443922649|gb|ELU42059.1| Rpo41p [Rhizoctonia solani AG-1 IA]
Length = 1371
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 339/909 (37%), Positives = 510/909 (56%), Gaps = 80/909 (8%)
Query: 175 RNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKL----APNL--P 228
R+ R + S L RQ+++ET A++ R + ++ + +L A L P
Sbjct: 340 RSLRTNLETVQSSPEAALWARQLELETSAYDTTMERLRHEMEELEKLELGGESASKLKNP 399
Query: 229 YMKSLFLGWFEP----LRDAIA--KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
++ W + L D I +E+ K +P+ L +A+IT+ +LM
Sbjct: 400 TLQQWMYQWLQATETRLEDDIKALTNKEKTTKPSAKSPLSPFLRLLDTSKLAMITILELM 459
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQE----------VRIHKFLE-----KTKKKNETK 327
L TGG + +A +G A+E E V++ + KT+K K
Sbjct: 460 RLHGTGGVSEGMKTSRALIAVGRAVETECLAVWSKKRGVKLGDVVSAPRSMKTRKGKPPK 519
Query: 328 NK--EDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVG 385
K E +E T T+ + +++ + + + P V + + W Q R +VG
Sbjct: 520 AKPEVIEIIEEERTGTSRASENPEQLAEAVVDTESPIVANM---ESSMPEWTQVVRVRVG 576
Query: 386 SRVIELLTQTAYIQ-SPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVL 444
S +++ + +AYI+ + ++ + + PAF H+ V KK GVI+ NP+V
Sbjct: 577 SFLVDSVMNSAYIKRNGTNESGENLCEEQPAFMHSYEYVR------GKKLGVIKLNPVVG 630
Query: 445 KGLERTA-RHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR-TPK 501
+ + R R + P ++PMLV P W YDKG + LP+ VMR + +Q +K +
Sbjct: 631 EKMARDPIRETLHPRHLPMLVKPQPWEDYDKGGYLKLPT-VMRIKDSPEQLSYLKHASAA 689
Query: 502 KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD-RNDVPLPEKPETEDEA 560
++ V+E LD LG T WR+N+++L+V+ ++W+ G +A + + D+ P KPE +D
Sbjct: 690 GHVDFVYECLDALGETPWRINDKILNVVLQVWNEGKGMAGIPPIQLDIEEPPKPEEDDPR 749
Query: 561 QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPY 620
+ K++++ + R H +RC++ KL VAR + DE FY PHN+DFRGRAYP+ P+
Sbjct: 750 ARATYLLKLKSILTDKRNNHGERCNVNYKLEVARFVNDE--FYMPHNLDFRGRAYPIPPH 807
Query: 621 LNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDI 680
LNH+G DLCRG+L FAE R LG+ GL WLKIHLAN++ G DK S + R+ F E HL++I
Sbjct: 808 LNHIGDDLCRGLLLFAERRPLGERGLRWLKIHLANVF--GYDKASFDERVLFVEKHLEEI 865
Query: 681 FDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHY 740
DSA+ PL G++WWLKA+DP+QCL+ C+ LTEAL+ PE + S++PVHQDG+CNGLQHY
Sbjct: 866 RDSAENPLNGKQWWLKADDPWQCLSTCMELTEALKGPVPELYRSNLPVHQDGTCNGLQHY 925
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQV 800
AALG D GA VNL ++PADVYS +A V V++ DA P+ AK++ ++
Sbjct: 926 AALGGDAAGAQHVNLEQGDRPADVYSHVARMVDVVVDEDAALG---IPE---AKVVQGKI 979
Query: 801 DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKV-TLTALGEM 859
RK+VKQTVMT+VYGVT+IGARDQI+++L++ + E + + Y AK L A+G++
Sbjct: 980 ARKVVKQTVMTTVYGVTFIGARDQIEKQLRDIVG-LSREESWPVAAYLAKTQVLGAIGDL 1038
Query: 860 FQAARGIMSWLGECAKIIA----SENQP-----------------VRWTTPLGLPVVQPY 898
F A I +WL A++IA S+ P V WTT LGLP+VQPY
Sbjct: 1039 FSGASQIQNWLSISARLIAKSIPSDRMPTVLSATPREAARERMTSVIWTTALGLPIVQPY 1098
Query: 899 RKLGRHTVKTSLQILTLQRETEKVMVK--RQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
RK + + T+LQ + + V +Q AFPPNFVHSLD +HMM+TA+ CR + +
Sbjct: 1099 RKAKKKQILTALQSVFISDPNLPTQVDPVKQSAAFPPNFVHSLDATHMMLTALECRASSI 1158
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGD 1016
TFA VHDSYWTHA VD+M+ I+R+ F+ L+ I + L + F + + PL D
Sbjct: 1159 TFASVHDSYWTHASTVDDMSAIIRDTFIALHSSNILQKLREEFLDRYKEYRV-PLSTLTD 1217
Query: 1017 FDLREVLGS 1025
+L +L S
Sbjct: 1218 RELCSILPS 1226
>gi|365760960|gb|EHN02641.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1357
Score = 524 bits (1349), Expect = e-145, Method: Compositional matrix adjust.
Identities = 317/863 (36%), Positives = 464/863 (53%), Gaps = 92/863 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E A E A ++ D E K ++ K+L W+ + + +E
Sbjct: 419 RQKVLENRATEAARERWKH---DFEEAKARGDISIEKNLNAKLWKWYNNMLPLVQEEINH 475
Query: 252 CR-----------------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA 294
C+ + +++ Y PY + M VIT+ +L+ L TGG
Sbjct: 476 CKSLSLERPSPSDKKHLNKVETNRLDYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGM 535
Query: 295 RVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 354
R +A +G AIE E R + L K+E++ D N + E +KL + +
Sbjct: 536 RTARAVISVGKAIEMEFRSEQVL-----KSESQTFRD-----VNKKSPEFKKLVQNAKSV 585
Query: 355 IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA--YIQSPADQLADAPPD- 411
+ ++ + + W Q+ RAK+GS +I +L A ++Q D + A
Sbjct: 586 FRSSQIEQSKIL---------WPQNIRAKIGSVLISMLIHVAKVFVQG-VDPITKAKVHG 635
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWT 469
PAF H + GSK GV++ + ++ L ER + +PMLV P W
Sbjct: 636 EAPAFAHGY-----QYHNGSK-LGVLKIHKTLIHQLNGERLIASVQPQLLPMLVEPKPWV 689
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSV 528
+ G + + S ++RT + +Q +K ++ V++ L+ LG+T W VN +V V
Sbjct: 690 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGDTPWTVNRKVFDV 749
Query: 529 LDRIWSCGGRLADLVD-RNDVPLP-EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
+ ++W+ G D+ + ++ LP P D + LR W+ +V+ + + S RCD
Sbjct: 750 VSQVWNRGESFLDIPSAQEEMVLPLAPPRNSDPSILRAWKLQVKTIANKFSSDRSNRCDT 809
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
KL +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F G+ LG SGL
Sbjct: 810 NYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGL 868
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
WLKIHL+NL+ G DKL E R+AFTE+HL+D+ DSA+ PL G RWW A+ P+Q LA
Sbjct: 869 KWLKIHLSNLF--GFDKLRLEDRVAFTESHLNDVKDSAENPLSGERWWTTADKPWQALAT 926
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNLV +KP DVY+
Sbjct: 927 CFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPNDKPQDVYA 986
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A V ++ A++ AK+L ++ RK+VKQTVMT+VYGVTY+GA QI
Sbjct: 987 HVARLVQKRLEIAAEKGDE------NAKILKDKITRKVVKQTVMTNVYGVTYVGATFQIA 1040
Query: 827 RRLKERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE---- 880
++L +P+ + E S Y K A+ E+F +A I WLGE AK I+
Sbjct: 1041 KQL----SPIFDDRKESLDYSKYLTKHVFGAIRELFHSAHLIQDWLGESAKRISKSIRLD 1096
Query: 881 ---------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMV 924
N+P V WTTPLGLP+VQPYR+ + V+T+LQ + + V
Sbjct: 1097 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1156
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
+RQ+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA DVD MN +LRE+F+
Sbjct: 1157 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDVDTMNVVLREQFI 1216
Query: 985 ELYEMPIFENLLDSFQKSFPKLV 1007
+L+E+ + L + F + + V
Sbjct: 1217 KLHEIDLVLRLKEEFDQRYKNYV 1239
>gi|390596373|gb|EIN05775.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 968
Score = 524 bits (1349), Expect = e-145, Method: Compositional matrix adjust.
Identities = 298/801 (37%), Positives = 455/801 (56%), Gaps = 75/801 (9%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
P+ L +++IT+ +LM L +GG + + +A +G A+E E
Sbjct: 111 GPFLSLLKPSKLSLITILELMHLSGSGGVNSGMKTARALLTVGKAVELEY---------- 160
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKK----VTDL----IKKQKLPAVRRIVKGQDDF 373
K E + D + ++++ + ++ KK T L + +++ A R + + ++
Sbjct: 161 -KAEMCRRNDIQIPQASSTFASKSEIEKKQRGFFTGLGYRELHARRVAAARYVQEAEEWT 219
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQ--LADAPPDIFPAFTHALRTVSKETKGGS 431
W Q+ + +VGS +++ L A ++ A + PAF H+ + KG
Sbjct: 220 SEWTQELKVRVGSFLVDTLMDVATVERTAINKVTGQEVTEEHPAFYHSYEYM----KG-- 273
Query: 432 KKYGVIECNPLVLKGLER-TARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
K G+I NP+V + + + R + P ++PMLV P W +++G + + + MR +
Sbjct: 274 HKLGIIRLNPVVAERMAKDNLRDTLHPRHLPMLVKPKPWLDHNQGGYIYNKTSAMRFKES 333
Query: 490 KQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-D 547
++Q + + + +E V+ LD LG+T W +N V ++ ++W+ G R A + D
Sbjct: 334 REQEVYLAHASAQGHVELVYAGLDVLGSTPWVINRDVFDIVLQVWNSGERFAKIPPAAFD 393
Query: 548 VPLPEKP-ETEDEAQLRK-WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
P PE+P E E + + + + + ++ HS+RC++ K+ +AR + FY P
Sbjct: 394 GPEPERPGEGETDPHKKTIYITRAKQYAQDKASNHSERCNVNYKIEIARAFLGDT-FYLP 452
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HN+DFRGRAYP+ P+LNH+G DL RG+L+F E R LG+ GL WLKIHLANLY G DK S
Sbjct: 453 HNLDFRGRAYPIPPHLNHIGDDLARGLLKFGESRPLGERGLRWLKIHLANLY--GYDKAS 510
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
+ R+ + ++ I+DSA KPL+G+RWW A+DP+QCLA C L AL S P F S
Sbjct: 511 FDERVNWVHERMEQIYDSATKPLDGQRWWTHADDPWQCLATCKELHAALESPDPLAFESS 570
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
+PVHQDG+CNGLQHYAALG D++GAA VNL ++P+DVY+ +A V I+ D ++
Sbjct: 571 LPVHQDGTCNGLQHYAALGGDSIGAAQVNLAVTDRPSDVYTYVANMVEREIEDDIKK--- 627
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-APMEEAELFGA 844
PD AK+L ++ RK+VKQTVMT+VYGVT+IGARDQ++++LK+RG P+E+ + A
Sbjct: 628 --PDNKWAKMLQGKIARKVVKQTVMTTVYGVTFIGARDQLEKQLKDRGDIPVEDC--WHA 683
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------------------- 885
+ Y AK TL +G++F+ A+ I +WL A++I+ P R
Sbjct: 684 ASYLAKKTLDCIGDLFRGAKDIQNWLNLSARLISKSIPPDRLELAARTASKRRKGIPIKD 743
Query: 886 ----------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPP 933
WTTPLGLP+VQPYR+ R + TSLQ + + E V +Q +AFPP
Sbjct: 744 IRKEQMTSVIWTTPLGLPIVQPYRQTQRRQILTSLQTVFISDPNMAETVNSTKQASAFPP 803
Query: 934 NFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFE 993
NFVHSLD +HMM+TA+ CR GLTFA VHDSYWTHA +DEM+ I+R+ FV L+ +
Sbjct: 804 NFVHSLDATHMMLTALECRSQGLTFASVHDSYWTHASTIDEMSGIIRDTFVALHSSDVLA 863
Query: 994 NLLDSFQKSFPKLVFPPLPER 1014
L + F + + P + R
Sbjct: 864 KLREEFVERYKDFKVPVISLR 884
>gi|429243230|ref|NP_594459.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe 972h-]
gi|384872627|sp|O13993.2|RPOM_SCHPO RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|347834189|emb|CAB16197.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe]
Length = 1154
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 311/859 (36%), Positives = 447/859 (52%), Gaps = 85/859 (9%)
Query: 230 MKSLFLGWFEPLRDAIAKE---------QERCRMAKHKVAYAPYFDQLPADMMAVITMHK 280
+ SLF W+ L +E E ++ Y P+ L + +A +T+ +
Sbjct: 323 VSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIME 382
Query: 281 LMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTV 340
+ L ARV +G + E+E FL + ++ E KNK ++ +
Sbjct: 383 VAQLSTNPRYDRGARVTTLLGGLGRSFERE-----FLSEQIQRQE-KNKSYKDKKRLKEL 436
Query: 341 TTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQS 400
+ K R+ V +L +L R + W KVGS + LL A I+
Sbjct: 437 FNDPRKFRQAVKNL----RLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIEV 492
Query: 401 PADQLADAP--PDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR--HMVI 456
A L+ AF H + +K G+I + K L R H+
Sbjct: 493 TAKDLSTGGILKQEVAAFVHTYQY------SNGRKVGMIVPHVEFYKLLSRDIEKPHLHP 546
Query: 457 PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRD-TVKRTPKKQLEPVFEALDTLG 515
+PMLV P WT + G +++ ++R GA +Q D +K + QL+ +F+A+ +LG
Sbjct: 547 QLLPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLG 606
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNV 572
WR+N R+ +VL RIW+ G + + R D+P P + + W + + +
Sbjct: 607 KVSWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMP-PYPKNSINPRDKVIWHTRRKEL 665
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
HSQRCD KL +AR +E+ FY+PH++DFRGRAYP+ +L+H+ +D+CRG+
Sbjct: 666 AALKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCRGL 724
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
LEF+ G+ LG GL+WLK+HLANL+ G+ K R AF ++++ ++FDSAD+PL+G +
Sbjct: 725 LEFSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDGNK 782
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WW KA+DPFQ LA C + EA+RS E++ISHIP+ QDG+CNGLQHYAALG D GA
Sbjct: 783 WWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQ 842
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
VNL + P+DVY +A V +++DA+ + A L +V R +VK TVMT+
Sbjct: 843 VNLWPSDHPSDVYEAVAEIVRGFLKKDAEAGDEM------ANFLKDKVTRSVVKPTVMTN 896
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE 872
VYGVTY+GAR QI +L E ME+ ++ + Y K AL +F A I WL
Sbjct: 897 VYGVTYVGARKQISEKL-ENIDGMEKLKVADYANYLTKKVFEALRSLFTQAHEIQDWLSA 955
Query: 873 CAKIIA-------------SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR-- 917
C +I E PV WTT L LP+VQPYR ++T+LQ + ++
Sbjct: 956 CCNLITHSLPADYIKEGIKDELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQTVFIEERD 1015
Query: 918 ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNR 977
T V +Q TAFPPNF+HSLD +HM MT + C + + FA VHDSYWTHACDVD+MN
Sbjct: 1016 RTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNINFAAVHDSYWTHACDVDQMNS 1075
Query: 978 ILREKFVELYEMPIFENLLDSFQ--------------------------KSFPKLVFPPL 1011
+LRE FV L+ I E L F+ KS+ L FPPL
Sbjct: 1076 LLREAFVLLHSNNIMERLKQEFEERYKGFLVSKKAIKANDEDLKAKFGNKSYIPLEFPPL 1135
Query: 1012 PERGDFDLREVLGSPYFFN 1030
P RG DL++VL S YFF+
Sbjct: 1136 PARGALDLKKVLESKYFFS 1154
>gi|156049831|ref|XP_001590882.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980]
gi|154693021|gb|EDN92759.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1392
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 330/926 (35%), Positives = 490/926 (52%), Gaps = 95/926 (10%)
Query: 135 VAEAVSSTDVEEDVSIV---EEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRM 191
V+EA S V+ ++ ++I + E+++ +Q+ S R + + S + M
Sbjct: 290 VSEAPESRAVDPSDGVLHYPDKISASVPEVRQTDQKGLGLKSLRKTLSLFSSLPSAGFDM 349
Query: 192 LKMR-------QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLG-----WFE 239
KM Q ++E +A + A + +R+ ++ + L L +S LG W
Sbjct: 350 SKMTEEQHRDIQSQLEEDAVQAAIDRWRDESSNLAKLGLNTTL---QSKSLGARMWKWQL 406
Query: 240 PLRDAIAKE----------QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGG 289
L A+ +E Q R + Y P+ LPA+ ++ +T+ M L + G
Sbjct: 407 ALTAALEEELKAIDEAEAKQHRSAADISRCEYGPFLRYLPAEKLSALTIISHMHALSSSG 466
Query: 290 EHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK 349
+ A I ++E E I + +++ K K + D D + + + + R
Sbjct: 467 IDKGLTLSFAILQIAKSVEDE-SIFESIQQNKAKPLFR---DSPADRARMLRILKSRARG 522
Query: 350 KVTDLIKKQKLP--AVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QL 405
+ I + + V Q + W RAKVGS ++E L + A + +
Sbjct: 523 ASGESIDENHSTNHSSEEFVLSQIRSREWSIGIRAKVGSFLLESLLKVAKVPVTLKHPET 582
Query: 406 ADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH-MVIPYMPMLVP 464
+ + PAF+H ++ + G KK GVI N ++++ L+R H ++ ++PMLV
Sbjct: 583 NETVTQMQPAFSHG-----QQYRLG-KKLGVINANKVIVELLKREPVHSLLAKHLPMLVK 636
Query: 465 PVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVN 522
P WTG+ G P VMR +G + QR+ + L VF L+ LG W++N
Sbjct: 637 PEPWTGFSSGGFLRHPGKVMRVKNGDQDQRNYADAAIDQGNLTTVFRGLNILGEQSWKIN 696
Query: 523 NRVLSVLDRIWSCGGRLADLV-DRNDVPLPEKPETE-DEAQLRKWQWKVRNVKKENRERH 580
V V+ W+ G +A+L D+ + P +PET D + R+W V+ V+ H
Sbjct: 697 QPVFDVMLDAWNSGDAIANLAPDKPRLEYPPEPETSSDPLERRRWVTAVKKVENAKAGFH 756
Query: 581 SQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRT 640
SQRC +L +AR ++D+ FY+PHNVDFRGRAYP+ PYLNH+G+D CRG++ F G+
Sbjct: 757 SQRCFQNFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMIFGVGKK 815
Query: 641 LGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDP 700
LG SGL WLK+HLAN+Y G DK S R F H+D+I+DSA PL G RWWL+AEDP
Sbjct: 816 LGTSGLKWLKVHLANVY--GFDKASLSEREEFASKHIDEIYDSATNPLGGDRWWLQAEDP 873
Query: 701 FQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK 760
+QCLA C+ L AL S P +F+S++PVHQDG+CNGLQHYAALG D GA VNL ++
Sbjct: 874 WQCLAACMELKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGDR 933
Query: 761 PADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIG 820
PADVY+ +A V I++D + +AK+L ++ RK+VKQTVMT+VYGVT+IG
Sbjct: 934 PADVYTAVADLVKESIKKD------LLEGHSKAKILDGKITRKVVKQTVMTNVYGVTFIG 987
Query: 821 ARDQIKRRL--KERGAPMEEAELFGA-SCYAAKVTLTALGEMFQAARGIMSWLGECAKII 877
A+ Q++++L R P + + G + Y TAL MF+ A I WLG+CA +
Sbjct: 988 AKAQVRKQLVAAHRDLPDDTEDNPGTLASYVVTKIFTALSTMFRGAHDIQYWLGDCASRV 1047
Query: 878 ASENQP----------------------------------VRWTTPLGLPVVQPYRKLGR 903
+S P V WTTPL LPVVQPYR
Sbjct: 1048 SSSLTPEQVNRIVEHASKQSARPSKGDASKLEEMSQFKSSVIWTTPLNLPVVQPYRTNKS 1107
Query: 904 HTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGV 961
V+TSLQ+L+L ++ V ++Q FPPNF+HSLD +HM+++AV +A L+FA V
Sbjct: 1108 RLVRTSLQLLSLAEPHRSDPVSSRKQLQGFPPNFIHSLDATHMLLSAVKSNEAKLSFAAV 1167
Query: 962 HDSYWTHACDVDEMNRILREKFVELY 987
HDS+WTHA DVD MN ILR+ FVE++
Sbjct: 1168 HDSFWTHAADVDTMNTILRDAFVEIH 1193
>gi|430811134|emb|CCJ31388.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 1054
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 308/805 (38%), Positives = 443/805 (55%), Gaps = 82/805 (10%)
Query: 230 MKSLFLGWFEPLRDAIAKEQERCRMA--------------KHKVAYAPYFDQLPADMMAV 275
+ S+ W + I +E ERC+ A +++Y + L + ++
Sbjct: 193 LNSILFEWHSLMIPLIKEEIERCKNAINGLIDKKIINNVNNDRLSYGVFIQLLAPEKLST 252
Query: 276 ITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD 335
IT+ +++ L TGG R +A +G +IE+E + + KKN+ ++
Sbjct: 253 ITILEVLRLHSTGGIAQGMRTARAILSVGKSIEKE-----YASEVLKKNKNFLGKNVNLS 307
Query: 336 ESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQT 395
+ + + + +K + I + P +VK K + I++ T+T
Sbjct: 308 QIFGNPRQFQTMLQKTQNNINFEINPKWPTVVKA----KIGSILISILIHVAKIDITTET 363
Query: 396 AYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL-ERTARHM 454
+ D PAF H + KG +K GVI+ N V+K L + R
Sbjct: 364 --------EKGDTISQKAPAFYHTYQY----QKG--RKLGVIKLNDQVMKQLGSQPLRGN 409
Query: 455 VIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK-RTPKKQLEPVFEALD 512
+ P +PMLV P W +D G ++ S VMR+ + +Q +K + + L+ +FE LD
Sbjct: 410 IHPRLLPMLVEPKPWISWDSGGYYLSKSTVMRSRDSIEQIQYLKIASERNNLKSIFEGLD 469
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADL-VDRNDVPLPEKPETEDEAQLRKWQWKVRN 571
LG+T W +N V +V+ +W+ G A + +++ P +P ++D A WQ + R
Sbjct: 470 VLGSTAWAINIPVFNVVIEVWNSGLEFAGIPPAESNIAFPPRPTSKDPADKISWQIQCRQ 529
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+ ++ + + S RCDI KL +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+DLCRG
Sbjct: 530 IARDAQNKQSIRCDINYKLEIARAFLHEK-MYFPHNLDFRGRAYPIPPHFNHLGNDLCRG 588
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
+L F E + +G+SGL WLKIHLAN+ G DK S R AFT +L +IFDSAD PL+G
Sbjct: 589 LLTFHEAKEIGESGLRWLKIHLANI--CGFDKESFLEREAFTVENLKNIFDSADNPLKGS 646
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
WWLK +DP+Q LA C LT ALR P F S +P+HQDG+CNGLQHYAALG D LGA
Sbjct: 647 GWWLKFDDPWQTLAACFELTAALRFPDPHKFKSRLPIHQDGTCNGLQHYAALGGDILGAR 706
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL +P DVY+ +A V +Q+DA+ + A LL ++ RK+VKQTVMT
Sbjct: 707 QVNLEPSNRPYDVYTRVAELVNEQVQKDAKEGNHL------AVLLKDKIARKIVKQTVMT 760
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
+VYGVTY+GAR+QI +LK + E +F A I WL
Sbjct: 761 NVYGVTYVGARNQILNQLKNLNSLPREM-------------------LFVRAHKIQEWLN 801
Query: 872 ECAKIIA-----------SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRE 918
E AK I+ + V WT+PL LP+VQPYRK R +KT+LQ +T +
Sbjct: 802 EAAKRISKSIDTSSYNGLNHMTSVIWTSPLNLPIVQPYRKSSRKQIKTNLQSIFITDPND 861
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
V ++Q+TAFPPNF+HSLD +HM+M+A++C+ AGLTFA VHDSYWTHA DVD MN I
Sbjct: 862 VSPVDTRKQQTAFPPNFIHSLDATHMLMSAISCKNAGLTFASVHDSYWTHAADVDNMNVI 921
Query: 979 LREKFVELYEMPIFENLLDSFQKSF 1003
LRE FV+L+E I ENLL+ F++ +
Sbjct: 922 LRETFVKLHEENIMENLLNEFRERY 946
>gi|359817571|gb|AEV66615.1| mitochondrial RNA polymerase [Oxytricha trifallax]
gi|403362099|gb|EJY80764.1| DNA-dependent RNA polymerase family protein [Oxytricha trifallax]
Length = 1305
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 318/878 (36%), Positives = 480/878 (54%), Gaps = 82/878 (9%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQE- 250
L RQ+KIE ++E + N+Y+ L + + L L W L +IA++Q+
Sbjct: 471 LFQRQLKIEELSFELSQNKYKNQLDSLIKIGRGDQLAVSHRYILSWMRLLETSIAEQQKI 530
Query: 251 ---RCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
R + Y Q+P++ +A + + LM L H
Sbjct: 531 FIKRGNLDPKNSKIGYYLIQMPSEKIASLCVLHLMKHLFKQFIHDI-------------- 576
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
++ F EK ++ +E K + DE + +++L+ + K QK P +
Sbjct: 577 -RQFDDEDFTEKIEQNHEIKIPAIQLFDELGKLF--EKELKNTLMTGKKSQKKPDDEEDI 633
Query: 368 KGQDDFKPWGQDARAKVGSRVIE-LLTQTAYIQSPADQLADAPPDI---FPAFTHALRTV 423
+D + G D R + ++ + +L + +I P D+ AF L
Sbjct: 634 LQEDMEQEIG-DERNALNKKIAKHMLMEDNFI-------GHLPRDVQLKIGAFLTNLMCK 685
Query: 424 SKETKGGSKKYGVIECNPLVLKGLERTARHMVI------------------------PYM 459
+ + K G+K Y +++ P VLK E+ +I +
Sbjct: 686 NLKYKIGNKSYLLLK--PQVLKQQEKKYLGYIIFNRSFIETFVGELDKIHDLSLQLERSL 743
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAK---QQRDTVKRTPKKQLEPVFEALDTLGN 516
PM+ P W + G + Y+ +T AK ++ K + L + + LD LG+
Sbjct: 744 PMIYQPAPWKNFTFGGY-----YLKQTKMAKVIPNFKEAQKYLQRVDLTNMCQVLDILGS 798
Query: 517 TKWRVNNRVLSVLDRIWSCGGRLADLVDR-NDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575
KWR+N R+L +++ +WS GG L ++ R ND + PE E R+ + K+ ++
Sbjct: 799 VKWRINRRILEIIEYVWSIGGGLGEVPKRFNDRQIT--PEMIKETNFRE-KLKLLKEHQK 855
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
NRE H+ RC+ L+LS+A+ K Y+PHN+DFRGR YP+ P+LNH+G+D+ RG+L+F
Sbjct: 856 NRETHALRCEFLLRLSIAQSFKHVNQIYFPHNMDFRGRVYPIPPHLNHMGADVNRGLLQF 915
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
AEG+ LGK GL WLK+H++N G DKL R A+ E+ +D I AD P + WL
Sbjct: 916 AEGQPLGKDGLFWLKVHVSN--KIGKDKLPIVDRAAYAESEMDMIHRCADDP-KNNLDWL 972
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
++++P+Q L+ I L++A+R +PE +IS+ VH DGSCNG+QHYAALGRD GA VNL
Sbjct: 973 QSDNPWQTLSAMIELSQAVRCKNPEEYISYQHVHVDGSCNGMQHYAALGRDDRGARQVNL 1032
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
E+P DVY+ I LVI + ++D A+ A+ L V+RK +KQTVMTSVYG
Sbjct: 1033 ADSERPGDVYTAILR--LVIEHIENEQDQALHE---VAEGLKGNVNRKTIKQTVMTSVYG 1087
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VT+IGAR QI+R+LK+R EL+ AS Y AKVT+ +G++F+ A I W +CAK
Sbjct: 1088 VTFIGARKQIQRQLKDRKLYETNGELYKASQYLAKVTIKCIGDLFRDANNIKEWFSKCAK 1147
Query: 876 IIASENQPVRWTTPLGLPVVQPYRKLGRHTV-KTSLQILTL--QRETEKVMVKRQRTAFP 932
++AS N+PVRW TPLGLP VQPY+ + +V KT LQ +T+ + + V ++Q +AFP
Sbjct: 1148 VVASTNEPVRWITPLGLPCVQPYKSVSNQSVIKTILQQITVADSLDDQPVNKQKQNSAFP 1207
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNFVHSLD +HMM TA+ C++ G+ FA VHDS+W H ++ EMN LR++FV L+ +
Sbjct: 1208 PNFVHSLDSTHMMYTALECKRKGIVFAAVHDSFWAHPSNITEMNATLRQQFVTLHGSSVL 1267
Query: 993 ENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
ENL ++F +P FP +P+RG FDL EV S YFF+
Sbjct: 1268 ENLYENFTSRYPNEKFPEIPKRGSFDLNEVRKSTYFFS 1305
>gi|348679853|gb|EGZ19669.1| hypothetical protein PHYSODRAFT_354222 [Phytophthora sojae]
Length = 576
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/582 (48%), Positives = 365/582 (62%), Gaps = 52/582 (8%)
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE- 552
D V+R +++ + +AL+ + W +N VL V+ +IW GG DL R DVPLP+
Sbjct: 2 DCVQR---GKMDGILKALNLMAEVPWVINKEVLEVVLKIWEDGGNFGDLPTRTDVPLPDP 58
Query: 553 -KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFR 611
PE D+ L + VR +++ NRE HS RCD KL VA + KDE YYP+N+DFR
Sbjct: 59 DSPEFADDPAL--YHRNVRKIEQLNREFHSLRCDTLYKLQVAEEFKDEPELYYPYNMDFR 116
Query: 612 GRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLA 671
GR YP+ P LNHLGSDL R +L F + + LG+ GL W+KIHLAN++ GVDK S + R+
Sbjct: 117 GRVYPIPPNLNHLGSDLSRSLLIFRDRKPLGERGLRWMKIHLANVF--GVDKCSFDERVE 174
Query: 672 FTENHLDDIFDSADKPL-EGR-RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
F + +LD + SA PL EG WW A+ PF L VC L A+ S P ++S+IP+H
Sbjct: 175 FADANLDKVVASASNPLGEGDCAWWKGADYPFLALGVCFELRRAIESPDPTKYMSNIPIH 234
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD-PAV-- 786
QDGSCNGLQHYAALGRD G + VNLV +P+DVY G+A V+ ++ DA P+V
Sbjct: 235 QDGSCNGLQHYAALGRDYSGGSQVNLVPAPRPSDVYMGVATEVMAKVENDAALGVPSVEE 294
Query: 787 -------FPD-------ALRAKL--LLSQ-------------VDRKLVKQTVMTSVYGVT 817
PD A R KL LL Q + RK+VKQTVMTSVYGVT
Sbjct: 295 VRAMLAGVPDDDTAETKARRIKLRTLLDQAQRKKCAQFLNGIITRKVVKQTVMTSVYGVT 354
Query: 818 YIGARDQIKRRLKE----RGAPMEEA---ELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
YIGAR QI RL E +G M+E E++ ASCY A++T+ ++G++F +ARGIM+WL
Sbjct: 355 YIGARKQISARLHETFLTKGHIMDEKLEDEIYHASCYCAELTMGSMGDLFNSARGIMAWL 414
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-ILTLQRETEKVMVKRQRT 929
+CA QP+ W TPLGLPVVQPYR V+T +Q +L + + + V + RQ++
Sbjct: 415 AKCAGKAGLSGQPMSWITPLGLPVVQPYRSKSTKQVRTKVQHVLMVDNDGQPVSIGRQKS 474
Query: 930 AFPPNFVHSLDGSHMMMTAVAC-RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
AFPPNFVHSLD +HMM+TA C ++FA VHDSYWTHAC VD MNR LRE+FV LYE
Sbjct: 475 AFPPNFVHSLDSTHMMLTARRCLEDEKISFAAVHDSYWTHACSVDIMNRRLREEFVHLYE 534
Query: 989 MPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
P+ E+LL + FP + F +P+ GD DLR VL SPYFFN
Sbjct: 535 QPLLEDLLTELRLRFPDMDFEDVPQLGDLDLRSVLDSPYFFN 576
>gi|170097643|ref|XP_001880041.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645444|gb|EDR09692.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 960
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 313/870 (35%), Positives = 467/870 (53%), Gaps = 86/870 (9%)
Query: 195 RQVKIETEAWE------KAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE 248
RQ +ET +E K +EY E L E +L + ++S W + L+ + E
Sbjct: 1 RQKHLETSVYEIARERMKEEHEYLESLGINAENRLKDST--LQSWMWQWHQNLKSRLESE 58
Query: 249 QERCRMAKHKVA---------YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
+ + K+ +PY + AD ++ IT+ +LM L +GG + + +A
Sbjct: 59 IKLIAAFEAKMLNRHDQTTQLLSPYLALVKADRLSYITILELMRLQGSGGVNHGMKTTRA 118
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
IG A+E E + + + N+ G +N + ++K++
Sbjct: 119 LIAIGKAVEMEYK-----AQMCRTNDIA-IPTMTGHSTNFFSVLG-------YSNLQKRR 165
Query: 360 LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ--LADAPPDIFPAFT 417
+ A R + G+ PW Q R+K+G ++E L AY++ D + + PAF
Sbjct: 166 MAAARHMQDGEAWTTPWSQAVRSKIGGILVECLMDVAYVRRQRDDQVTGKSVTEDQPAFY 225
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIP-YMPMLVPPVKWTGYDKGA 475
HA V K G+++ NP V + L R + P ++PMLVPP W +G
Sbjct: 226 HAYEYVR------GTKLGILKLNPAVAERLSTDRLRETIHPRHLPMLVPPKPWMHIRQGG 279
Query: 476 HFFLPSYVMRTHGAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+ + + VMR + +Q +++ ++E V LD LG+T WR+N V V+ ++W+
Sbjct: 280 YLYNKTSVMRFKESIEQETYLQKAIDDGKMELVLAGLDVLGSTPWRINKNVYEVVLKVWN 339
Query: 535 CGGRLADLVDR-NDVPLPEKPET-EDEAQLRKWQWKVRNVKKENR-ERHSQRCDIELKLS 591
G R+ + D P PE PE E + Q R + + + + HS+RC++ K+
Sbjct: 340 SGERMGKIPPAVYDQPAPEIPENYEKDLQARSVHLQRQKSYTQGKANNHSERCNVNYKIE 399
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+AR +E Y PHN+DFRGRAYP+ P+L+H+G DLCRG+L FA+ + LG+ GL WLKI
Sbjct: 400 IARAFLHDE-LYMPHNLDFRGRAYPIPPHLSHIGDDLCRGLLLFADAKPLGERGLWWLKI 458
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
HLANLY G DK S + R + LDDI DSA PL+G+RWW K +DP+Q LA C+ L
Sbjct: 459 HLANLY--GYDKASFQERADWVMERLDDIADSATNPLDGKRWWTKGDDPWQVLAACMELH 516
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
AL+S P ++S +PVHQDG+CNGLQHYAALG D +GA VNL A ++P+DVYS +
Sbjct: 517 AALQSEDPLAYMSTLPVHQDGTCNGLQHYAALGGDAVGAKQVNLAAGDRPSDVYSYVGRL 576
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V I+ DA + AKLL ++ RK+VKQTVMT+VYGVT++GAR+QI+++LK+
Sbjct: 577 VDQQIEADAANGLEM------AKLLQGKITRKVVKQTVMTTVYGVTFVGAREQIEKQLKD 630
Query: 832 RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------ 885
R +E + A+ Y AK LT +G+ F A+ I +WL CA++I+ P R
Sbjct: 631 RHDIPDEL-CWTAASYLAKKVLTCIGDTFTGAKHIQNWLNLCARLISKSIAPDRFIDAIA 689
Query: 886 ------------------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEK 921
WTTPL LP++QPYRK R V T++Q + + +
Sbjct: 690 APKKRGRPAVAMSRFKKEQMTSVVWTTPLQLPIIQPYRKHARKQVMTAVQSVFISDPSSP 749
Query: 922 VMVK--RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRIL 979
V +Q +AFPPNF+HSLD +HMM+TA+ C GLTFA VHDSYWTHA +D M ++
Sbjct: 750 AEVNSLKQASAFPPNFIHSLDATHMMLTALECHSRGLTFASVHDSYWTHASTIDSMAEVI 809
Query: 980 REKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
R+ F+ L+ + L + F++ F P
Sbjct: 810 RDTFILLHSSDVLGKLHEEFKERFKGFKLP 839
>gi|367000748|ref|XP_003685109.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
gi|357523407|emb|CCE62675.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
Length = 1322
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 327/981 (33%), Positives = 502/981 (51%), Gaps = 129/981 (13%)
Query: 77 SILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVLKNDNFWCPRGYATVA 136
++ +D K V +D + G+ V +G LN SF + N
Sbjct: 306 TVDKDASKLVAVDTI--GMKVVRHTLLGLTLNENQKKKIKSFHFEADKNLL--------- 354
Query: 137 EAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQ 196
+ D ++ + E L E ++E + N ++R+R L++R
Sbjct: 355 ----NIDEQKTIDFYELSNSLTNEAERERFEDALNEFNQDRQRA-----------LELRA 399
Query: 197 VKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLG---WFEPLRDAIAKEQERC- 252
E W+ D E K ++ K+L + W+ + + +E E+C
Sbjct: 400 TNAAKERWK----------YDFEEAKARGDISIKKNLNVKLWEWYTKMLPYVKQEIEKCK 449
Query: 253 -------------RMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
R + ++ YAPYF + + M VIT+ +L+ L TGG R +A
Sbjct: 450 EVMNSTEKKSTVSRQNRLRMEYAPYFTLVDPEKMCVITILELLKLNSTGGIIEGMRTARA 509
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+G AIE E R + L KNE+ ++ K + + ++ K
Sbjct: 510 VIAVGKAIEMEFRSEQLL-----KNESH-------------IFKEIKQSQNLKRFVRSAK 551
Query: 360 LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ----SPADQLADAPPDIFPA 415
+ R +K + W Q ARAK+GS +I L A I+ P + + PA
Sbjct: 552 --SRFRSIKIEQSKIIWSQPARAKIGSIMISNLINVAKIEVGGMDPVTK--EKVYGEVPA 607
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDK 473
F+H+ + K GV++ + ++ L ER + +PMLV P +W +
Sbjct: 608 FSHSYQY------HNGLKLGVLKIHKSLVHQLNGERMVAAVQPQLLPMLVAPREWKNWKC 661
Query: 474 GAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
G +++ S ++R+ + +Q +K ++ V+ L+ LG+T W VN ++ +V+ +
Sbjct: 662 GGYYYTQSTLIRSKDSPEQVAYLKAVSDAGAIDRVYHGLNVLGSTPWTVNRKIFNVISEV 721
Query: 533 WSCGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
W+ G D+ + LP + D + +R+W+ K +++ + S RCD KL
Sbjct: 722 WNTGKPFLDIPGIQNTLNLLPPPAKDADPSIIRQWKLKNKDIANKFSSNRSVRCDSNYKL 781
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F G+ LG SGL WLK
Sbjct: 782 EIARAFLGEK-IYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWRGKQLGASGLKWLK 840
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
+HL+NLY G DK S E R+ F E ++++I DSA+ PL G+ WW A+ P+Q L+ CI L
Sbjct: 841 VHLSNLY--GFDKASLEDRVRFAEENMENIKDSAENPLNGKGWWKSADKPWQALSTCIEL 898
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
EA + +PE FISH PVHQDG+CNGLQHYAALG D GA VNL +KP DVY +A
Sbjct: 899 NEAFKLENPEDFISHQPVHQDGTCNGLQHYAALGGDCEGAKQVNLKPSDKPMDVYKYVAN 958
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
V+ ++++A +AK+L ++ RK+VKQTVMT+VYGVTY+GA QI ++L
Sbjct: 959 LVVERLKKEAAGGDE------KAKVLQDKITRKVVKQTVMTNVYGVTYVGATFQIDKQLS 1012
Query: 831 E----RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA-------- 878
+ R +E S Y + A+ E+F A I WLGEC+ I+
Sbjct: 1013 DVFENRNQSLE------LSKYLTRHVFMAIRELFHGAHLIQDWLGECSNKISRSIRLDVN 1066
Query: 879 -----SENQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKR 926
++N+P V WTTPLGLP+VQPYR+ + V+T+LQ + + V +R
Sbjct: 1067 EKSFKNQNKPDFMSSVIWTTPLGLPIVQPYREGSKKQVRTNLQTVFISDPFSINPVNARR 1126
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
Q+ FPPNF+HSLD SHM+++A AC + GL FA VHDSYWTHACD+D MN+ LR++FV L
Sbjct: 1127 QKAGFPPNFIHSLDASHMLLSASACGEKGLDFASVHDSYWTHACDIDIMNKALRDQFVAL 1186
Query: 987 YEMPIFENLLDSFQKSFPKLV 1007
+E+ + + L + F + + V
Sbjct: 1187 HEVDLIQRLKNEFDERYKNYV 1207
>gi|258573307|ref|XP_002540835.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901101|gb|EEP75502.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1231
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 309/874 (35%), Positives = 451/874 (51%), Gaps = 85/874 (9%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K R L+ + E W K + + + L P+ M +L W + L +I
Sbjct: 215 KQRRLEQDSIVAAMERWRKESEDR------ASKTGLGPSEKKMGALLWDWQQCLLTSIQS 268
Query: 248 EQERCRMAKHK----------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVV 297
E + A+ K YAP+ + A+ ++ IT+ M L G R+
Sbjct: 269 EMQSALRAQEKERKTPEDNDRCEYAPFLSTIGAEKLSAITILATMNALGRSGMDKGIRLT 328
Query: 298 QAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKK 357
+ ++G A+++E + E D ++T + K V LI
Sbjct: 329 RLIMVLGKAVQEEYLADRIRESAY-------------DSAHTNSANSANRAKMVEKLIAS 375
Query: 358 QKLPAVRRIV-KGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 414
+ R +V K + +P W AK+G+ + +L + + P + ++
Sbjct: 376 KDHSKWRYLVRKYNESHEPVNWSAATEAKIGALLASMLFSSTKV--PVEHKNPETREVTV 433
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDK 473
+ A R V + KG S G ++ + +++ L R A H++ ++PM+ PP W+ Y
Sbjct: 434 SKQPAFRHVYQLEKGFS--IGYVQLHDSIVEKLGREPASHLLAKHLPMVSPPAPWSSYHH 491
Query: 474 GAHFFLPSYVMRTH--GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
G PS V+R A Q + + + L+ +F L+ LG T W++N V V+
Sbjct: 492 GGFLEQPSLVIRARPDNALQLQYVKAASRRGDLDEIFAGLNVLGKTGWQINRPVFDVMLE 551
Query: 532 IWSCGGRLADL-VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
W+ G LAD+ ++P PEKP+T D L+ + V + HSQRC L+L
Sbjct: 552 AWNSGKELADIPAAEPNLPEPEKPDTGDSGSLKAYYRAKAVVDNKRSGFHSQRCFQNLQL 611
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
VAR E FY PHN+DFRGRAYP+ PY N +GSD+CRG+L F+EGR LG+ GL WLK
Sbjct: 612 EVARAYIGET-FYLPHNMDFRGRAYPLPPYFNQMGSDMCRGLLLFSEGRQLGERGLKWLK 670
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLAN+Y G DK S + R F+ +HLDD+ DSA+K L GRRWWL+A DPFQCLA CI L
Sbjct: 671 IHLANVY--GFDKASFDERAQFSMDHLDDVIDSAEKGLHGRRWWLQAADPFQCLAACIEL 728
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
AL + P F+SH+P+HQDGSCNGLQHYAALG D +GA VNL ++P+D+YS +A
Sbjct: 729 KNALACADPTKFVSHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSDIYSAVAE 788
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
V I +DA + +LL +++RK+VKQTVMT+VYGVT++GA Q++++L
Sbjct: 789 HVHQSIVQDAASGSQL------GELLKDKINRKVVKQTVMTNVYGVTFLGAIRQVQKQLD 842
Query: 831 ERGAPM-EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP------ 883
E + E + + Y + AL MF A I WLG+CA I P
Sbjct: 843 EIYPDLAENNNVNKIATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLSPDQIEAV 902
Query: 884 ---------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ 916
V WTTPL LPVVQPYR+ V T++Q L+++
Sbjct: 903 IEARNAPATAAKKPKKKDDLSKRFRSTVIWTTPLKLPVVQPYREAKVRRVTTAIQSLSIK 962
Query: 917 RETEKVMVKR--QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
+V R Q AFPPNF+HSLD +HMM++A+ C + GL+F+ VHDS+WTHA DVD
Sbjct: 963 EPHSDDIVSRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAVHDSFWTHAGDVDT 1022
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
MN +LR+ FV ++ I L + + + ++
Sbjct: 1023 MNLVLRDAFVRMHSEDIVGRLAAELKARYSQNMY 1056
>gi|254566053|ref|XP_002490137.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
gi|238029933|emb|CAY67856.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
Length = 1321
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 309/871 (35%), Positives = 462/871 (53%), Gaps = 90/871 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPY--MKSLFLGWFEPLRDAIAKEQERC 252
RQ +E ++ + A ++ + L D E + N+P +K+ W L I +E +C
Sbjct: 361 RQRLLEFQSLDGAKRKWEQTLEDFKESNVV-NVPSKSIKNYLWKWHSKLLPLIKEEVLKC 419
Query: 253 RMA------------------------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG 288
+ ++ YA Y + D M+ +T+ +L+ ++ TG
Sbjct: 420 QKTLSIIGAGNLNSYKTKLSTMERKAFNERLEYANYLILVSPDKMSTLTILELLKIIFTG 479
Query: 289 GEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKK--KNETKNKEDEEGDESNTVTTEQEK 346
R +A +G A+E E R + L K KN K +E VTT
Sbjct: 480 KNTTGIRTARAVISVGKAVELEYRSERLLSKEIDVFKNFRNMKNSKEF--KRLVTTGS-- 535
Query: 347 LRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA---- 402
+ T L+++ + ++ + ++ W + +AK+GS +I LL Q+A I
Sbjct: 536 -KNTFTKLLQQSRSASID--TELEETLFNWPNEIKAKIGSVLISLLLQSAKIDVQGKDPI 592
Query: 403 --DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--Y 458
+++ P IF + +A K G+++ + L + + Y
Sbjct: 593 TNEEVHGQVPAIFHQYQYA----------NGNKIGILKFHHDFTSKLSKDNLSGAVQPQY 642
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNT 517
+PMLV P W ++ G +++ + ++RT + +Q VK + ++ V++ L LGNT
Sbjct: 643 LPMLVRPKPWLSHNLGGYYYTETSLIRTKDSPEQLAYVKAASENNTIDKVYQGLTVLGNT 702
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL--PEKPETEDEAQLRKWQWKVRNVKKE 575
W +N+ + +V+ +W+ G + D+ D P+ P+ P D + +R W+++VR V +
Sbjct: 703 PWTINSEIFNVISEVWNSGNQFLDIPAIQDSPIYPPQPPSDADPSVIRDWKYQVRKVSNK 762
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
S RCD KL AR E Y+PHN+DFRGRAYP+ P+LNHLG+D+ RG+L F
Sbjct: 763 FSSDRSMRCDANYKLETARGFIGER-IYFPHNLDFRGRAYPISPHLNHLGNDMSRGLLLF 821
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
EG+ LG+ GL WLKIHLANLY G+DK + + R FT+ + +I DSA KPL G+ WW
Sbjct: 822 WEGKELGERGLRWLKIHLANLY--GLDKETLDKREQFTDLNKANIIDSATKPLAGKGWWK 879
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
+E P+Q L+VCI L EA + +P F+SHIPVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 880 SSEKPWQTLSVCIELAEAWKLKNPNMFVSHIPVHQDGTCNGLQHYAALGGDVEGATQVNL 939
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
+ KP DVYS +A V + DA + AL+ L + RK+VKQTVMTSVYG
Sbjct: 940 MPDNKPNDVYSYVAKLVQKRVDIDATNGHQL---ALK---LQRHIKRKVVKQTVMTSVYG 993
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VTYIGA DQI RRLKE ++ + A Y A +++ E+F A I WL E +K
Sbjct: 994 VTYIGASDQIDRRLKEIFGD-DDPDTHVAGRYLALQVFSSIRELFTGAHQIQDWLAEASK 1052
Query: 876 IIASENQ---------------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILT 914
I + V WT+PLGLP+VQPYR +G+ V T+LQ +
Sbjct: 1053 KITKSIRMDIDTSMTKKSSKSAKISHLASVIWTSPLGLPIVQPYRSIGKKQVATNLQTVF 1112
Query: 915 LQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
+ V ++Q AFPPN++HSLD SHM+++++ C + L+FA VHDSYWTHA DV
Sbjct: 1113 ISDPHAVSPVDSRKQTNAFPPNYIHSLDASHMLLSSIECGQRRLSFAAVHDSYWTHAADV 1172
Query: 973 DEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
D MN ILR+ FV+L+E + ++L D F + +
Sbjct: 1173 DIMNEILRDAFVKLHETDLVQDLKDEFDRRY 1203
>gi|328350537|emb|CCA36937.1| DNA-directed RNA polymerase,mitochondrial [Komagataella pastoris CBS
7435]
Length = 1329
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 309/871 (35%), Positives = 462/871 (53%), Gaps = 90/871 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPY--MKSLFLGWFEPLRDAIAKEQERC 252
RQ +E ++ + A ++ + L D E + N+P +K+ W L I +E +C
Sbjct: 369 RQRLLEFQSLDGAKRKWEQTLEDFKESNVV-NVPSKSIKNYLWKWHSKLLPLIKEEVLKC 427
Query: 253 RMA------------------------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG 288
+ ++ YA Y + D M+ +T+ +L+ ++ TG
Sbjct: 428 QKTLSIIGAGNLNSYKTKLSTMERKAFNERLEYANYLILVSPDKMSTLTILELLKIIFTG 487
Query: 289 GEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKK--KNETKNKEDEEGDESNTVTTEQEK 346
R +A +G A+E E R + L K KN K +E VTT
Sbjct: 488 KNTTGIRTARAVISVGKAVELEYRSERLLSKEIDVFKNFRNMKNSKEF--KRLVTTGS-- 543
Query: 347 LRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA---- 402
+ T L+++ + ++ + ++ W + +AK+GS +I LL Q+A I
Sbjct: 544 -KNTFTKLLQQSRSASID--TELEETLFNWPNEIKAKIGSVLISLLLQSAKIDVQGKDPI 600
Query: 403 --DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--Y 458
+++ P IF + +A K G+++ + L + + Y
Sbjct: 601 TNEEVHGQVPAIFHQYQYA----------NGNKIGILKFHHDFTSKLSKDNLSGAVQPQY 650
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNT 517
+PMLV P W ++ G +++ + ++RT + +Q VK + ++ V++ L LGNT
Sbjct: 651 LPMLVRPKPWLSHNLGGYYYTETSLIRTKDSPEQLAYVKAASENNTIDKVYQGLTVLGNT 710
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL--PEKPETEDEAQLRKWQWKVRNVKKE 575
W +N+ + +V+ +W+ G + D+ D P+ P+ P D + +R W+++VR V +
Sbjct: 711 PWTINSEIFNVISEVWNSGNQFLDIPAIQDSPIYPPQPPSDADPSVIRDWKYQVRKVSNK 770
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
S RCD KL AR E Y+PHN+DFRGRAYP+ P+LNHLG+D+ RG+L F
Sbjct: 771 FSSDRSMRCDANYKLETARGFIGER-IYFPHNLDFRGRAYPISPHLNHLGNDMSRGLLLF 829
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
EG+ LG+ GL WLKIHLANLY G+DK + + R FT+ + +I DSA KPL G+ WW
Sbjct: 830 WEGKELGERGLRWLKIHLANLY--GLDKETLDKREQFTDLNKANIIDSATKPLAGKGWWK 887
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
+E P+Q L+VCI L EA + +P F+SHIPVHQDG+CNGLQHYAALG D GA VNL
Sbjct: 888 SSEKPWQTLSVCIELAEAWKLKNPNMFVSHIPVHQDGTCNGLQHYAALGGDVEGATQVNL 947
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
+ KP DVYS +A V + DA + AL+ L + RK+VKQTVMTSVYG
Sbjct: 948 MPDNKPNDVYSYVAKLVQKRVDIDATNGHQL---ALK---LQRHIKRKVVKQTVMTSVYG 1001
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VTYIGA DQI RRLKE ++ + A Y A +++ E+F A I WL E +K
Sbjct: 1002 VTYIGASDQIDRRLKEIFGD-DDPDTHVAGRYLALQVFSSIRELFTGAHQIQDWLAEASK 1060
Query: 876 IIASENQ---------------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILT 914
I + V WT+PLGLP+VQPYR +G+ V T+LQ +
Sbjct: 1061 KITKSIRMDIDTSMTKKSSKSAKISHLASVIWTSPLGLPIVQPYRSIGKKQVATNLQTVF 1120
Query: 915 LQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
+ V ++Q AFPPN++HSLD SHM+++++ C + L+FA VHDSYWTHA DV
Sbjct: 1121 ISDPHAVSPVDSRKQTNAFPPNYIHSLDASHMLLSSIECGQRRLSFAAVHDSYWTHAADV 1180
Query: 973 DEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
D MN ILR+ FV+L+E + ++L D F + +
Sbjct: 1181 DIMNEILRDAFVKLHETDLVQDLKDEFDRRY 1211
>gi|303313347|ref|XP_003066685.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106347|gb|EER24540.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1385
Score = 518 bits (1333), Expect = e-143, Method: Compositional matrix adjust.
Identities = 310/819 (37%), Positives = 435/819 (53%), Gaps = 84/819 (10%)
Query: 244 AIAKEQERCRMAKH---KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
+I K QE+ R + YAP+ + + D +A IT+ M L G + R+ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK- 359
++G A+++E T + ET +K + + + K V DLI +
Sbjct: 483 MLLGRAVQEEY-------VTDRIQETPSK---------SAPLDSGRRAKLVQDLIPSNRG 526
Query: 360 LPAVRR--IVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
VR I K + +P W AK+GS + +L + + Q +I
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKG 474
A R V + KG S G + + V+ R A ++ ++PM+ PP WT Y G
Sbjct: 585 KQPAFRHVYQLEKGHS--VGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWTSYRYG 642
Query: 475 AHFFLPSYVMRTHGAKQQ---RDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLD 530
P+ +MR Q R V+ + L+ +F L+ LG T WR+N V V+
Sbjct: 643 GFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPVFDVML 702
Query: 531 RIWSCGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
W+ G LAD+ VD N +P P KPET+D QLR + V + HSQRC L
Sbjct: 703 EAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQRCFQNL 761
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+L +AR E FY PHN+DFRGRAYP+ PY N +G D+CRG+L F++GR LG+ GL W
Sbjct: 762 QLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGERGLRW 820
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIH+AN+Y G DK S + R F +HLDD+ DSA+K L GRRWWL+A DPFQCLA CI
Sbjct: 821 LKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQCLAACI 878
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL P +ISH+P+HQDGSCNGLQHYAALG D +GA VNL ++P+D+YS +
Sbjct: 879 ELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSDIYSAV 938
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V I ++A + AK+L +V+RK+VKQTVMT+VYGVT++GA Q++++
Sbjct: 939 ADHVRQSIAQEAAAGNQL------AKILEDKVNRKIVKQTVMTNVYGVTFLGAIRQVQKQ 992
Query: 829 LKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP---- 883
L + E + G + Y + AL MF A I WLG+CA I P
Sbjct: 993 LNAFFPELSERNVVGKCATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLGPEQIE 1052
Query: 884 --------------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
V WTTPL LPVVQPYR+ V T+LQ
Sbjct: 1053 ALEAARQVPISGTSKAKKKAIIDDLSKRFLSTVIWTTPLKLPVVQPYREAKTRRVVTTLQ 1112
Query: 912 ILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
L+++ ++ V ++Q AFPPNF+HSLD +HMM++A+ C + GL+F+ VHDS+WTHA
Sbjct: 1113 TLSIKDPHSSDVVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAVHDSFWTHA 1172
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
D+D MNR+LR+ FV ++ I L F+ + K V+
Sbjct: 1173 GDIDTMNRVLRDAFVRMHSEDIVGRLASEFKARYSKHVY 1211
>gi|119191788|ref|XP_001246500.1| hypothetical protein CIMG_00271 [Coccidioides immitis RS]
Length = 1363
Score = 517 bits (1332), Expect = e-143, Method: Compositional matrix adjust.
Identities = 310/819 (37%), Positives = 435/819 (53%), Gaps = 84/819 (10%)
Query: 244 AIAKEQERCRMAKH---KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
+I K QE+ R + YAP+ + + D +A IT+ M L G + R+ +
Sbjct: 401 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 460
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK- 359
++G A+++E T + ET +K + + + K V DLI +
Sbjct: 461 MLLGRAVQEEY-------VTDRIQETPSK---------SAPLDSGRRAKLVQDLIPSNRG 504
Query: 360 LPAVRR--IVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
VR I K + +P W AK+GS + +L + + Q +I
Sbjct: 505 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 562
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKG 474
A R V + KG S G + + V+ R A ++ ++PM+ PP WT Y G
Sbjct: 563 KQPAFRHVYQLEKGHS--VGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWTSYRYG 620
Query: 475 AHFFLPSYVMRTHGAKQQ---RDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLD 530
P+ +MR Q R V+ + L+ +F L+ LG T WR+N V V+
Sbjct: 621 GFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPVFDVML 680
Query: 531 RIWSCGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
W+ G LAD+ VD N +P P KPET+D QLR + V + HSQRC L
Sbjct: 681 EAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQRCFQNL 739
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+L +AR E FY PHN+DFRGRAYP+ PY N +G D+CRG+L F++GR LG+ GL W
Sbjct: 740 QLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGERGLRW 798
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIH+AN+Y G DK S + R F +HLDD+ DSA+K L GRRWWL+A DPFQCLA CI
Sbjct: 799 LKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQCLAACI 856
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL P +ISH+P+HQDGSCNGLQHYAALG D +GA VNL ++P+D+YS +
Sbjct: 857 ELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSDIYSAV 916
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V I ++A + AK+L +V+RK+VKQTVMT+VYGVT++GA Q++++
Sbjct: 917 ADHVRQSIAQEAAAGNQL------AKILEDKVNRKIVKQTVMTNVYGVTFLGAIRQVQKQ 970
Query: 829 LKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP---- 883
L + E + G + Y + AL MF A I WLG+CA I P
Sbjct: 971 LNAFFPELSERNVVGKCATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLGPEQIE 1030
Query: 884 --------------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
V WTTPL LPVVQPYR+ V T+LQ
Sbjct: 1031 ALEAARHVPISGTSKAKKKAIIDDLSKRFLSTVIWTTPLKLPVVQPYREAKTRRVVTTLQ 1090
Query: 912 ILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
L+++ ++ V ++Q AFPPNF+HSLD +HMM++A+ C + GL+F+ VHDS+WTHA
Sbjct: 1091 TLSIKDPHSSDVVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAVHDSFWTHA 1150
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
D+D MNR+LR+ FV ++ I L F+ + K V+
Sbjct: 1151 GDIDTMNRVLRDAFVRMHSEDIVGRLASEFKARYSKHVY 1189
>gi|320036385|gb|EFW18324.1| DNA-directed RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 1385
Score = 517 bits (1332), Expect = e-143, Method: Compositional matrix adjust.
Identities = 310/819 (37%), Positives = 435/819 (53%), Gaps = 84/819 (10%)
Query: 244 AIAKEQERCRMAKH---KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
+I K QE+ R + YAP+ + + D +A IT+ M L G + R+ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK- 359
++G A+++E T + ET +K + + + K V DLI +
Sbjct: 483 MLLGRAVQEEY-------VTDRIQETPSK---------SAPLDSGRRAKLVQDLIPSNRG 526
Query: 360 LPAVRR--IVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
VR I K + +P W AK+GS + +L + + Q +I
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKG 474
A R V + KG S G + + V+ R A ++ ++PM+ PP WT Y G
Sbjct: 585 KQPAFRHVYQLEKGHS--VGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWTSYRYG 642
Query: 475 AHFFLPSYVMRTHGAKQQ---RDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLD 530
P+ +MR Q R V+ + L+ +F L+ LG T WR+N V V+
Sbjct: 643 GFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPVFDVML 702
Query: 531 RIWSCGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
W+ G LAD+ VD N +P P KPET+D QLR + V + HSQRC L
Sbjct: 703 EAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQRCFQNL 761
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+L +AR E FY PHN+DFRGRAYP+ PY N +G D+CRG+L F++GR LG+ GL W
Sbjct: 762 QLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGERGLRW 820
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIH+AN+Y G DK S + R F +HLDD+ DSA+K L GRRWWL+A DPFQCLA CI
Sbjct: 821 LKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQCLAACI 878
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL P +ISH+P+HQDGSCNGLQHYAALG D +GA VNL ++P+D+YS +
Sbjct: 879 ELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSDIYSAV 938
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V I ++A + AK+L +V+RK+VKQTVMT+VYGVT++GA Q++++
Sbjct: 939 ADHVRQSIAQEAAAGNQL------AKILEDKVNRKIVKQTVMTNVYGVTFLGAIRQVQKQ 992
Query: 829 LKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP---- 883
L + E + G + Y + AL MF A I WLG+CA I P
Sbjct: 993 LNAFFPELSERNVVGKCATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLGPEQIE 1052
Query: 884 --------------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
V WTTPL LPVVQPYR+ V T+LQ
Sbjct: 1053 ALEAARQVPISGTSKAKKKAIIDDLSKRFLSTVIWTTPLKLPVVQPYREAKTRRVVTTLQ 1112
Query: 912 ILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
L+++ ++ V ++Q AFPPNF+HSLD +HMM++A+ C + GL+F+ VHDS+WTHA
Sbjct: 1113 TLSIKDPHSSDVVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAVHDSFWTHA 1172
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
D+D MNR+LR+ FV ++ I L F+ + K V+
Sbjct: 1173 GDIDTMNRVLRDAFVRMHSEDIVGRLASEFKARYSKHVY 1211
>gi|392864271|gb|EAS34905.2| mitochondrial DNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1385
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 310/819 (37%), Positives = 435/819 (53%), Gaps = 84/819 (10%)
Query: 244 AIAKEQERCRMAKH---KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
+I K QE+ R + YAP+ + + D +A IT+ M L G + R+ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK- 359
++G A+++E T + ET +K + + + K V DLI +
Sbjct: 483 MLLGRAVQEEY-------VTDRIQETPSK---------SAPLDSGRRAKLVQDLIPSNRG 526
Query: 360 LPAVRR--IVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
VR I K + +P W AK+GS + +L + + Q +I
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKG 474
A R V + KG S G + + V+ R A ++ ++PM+ PP WT Y G
Sbjct: 585 KQPAFRHVYQLEKGHS--VGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWTSYRYG 642
Query: 475 AHFFLPSYVMRTHGAKQQ---RDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLD 530
P+ +MR Q R V+ + L+ +F L+ LG T WR+N V V+
Sbjct: 643 GFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPVFDVML 702
Query: 531 RIWSCGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
W+ G LAD+ VD N +P P KPET+D QLR + V + HSQRC L
Sbjct: 703 EAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQRCFQNL 761
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+L +AR E FY PHN+DFRGRAYP+ PY N +G D+CRG+L F++GR LG+ GL W
Sbjct: 762 QLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGERGLRW 820
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIH+AN+Y G DK S + R F +HLDD+ DSA+K L GRRWWL+A DPFQCLA CI
Sbjct: 821 LKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQCLAACI 878
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL P +ISH+P+HQDGSCNGLQHYAALG D +GA VNL ++P+D+YS +
Sbjct: 879 ELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSDIYSAV 938
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V I ++A + AK+L +V+RK+VKQTVMT+VYGVT++GA Q++++
Sbjct: 939 ADHVRQSIAQEAAAGNQL------AKILEDKVNRKIVKQTVMTNVYGVTFLGAIRQVQKQ 992
Query: 829 LKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP---- 883
L + E + G + Y + AL MF A I WLG+CA I P
Sbjct: 993 LNAFFPELSERNVVGKCATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLGPEQIE 1052
Query: 884 --------------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
V WTTPL LPVVQPYR+ V T+LQ
Sbjct: 1053 ALEAARHVPISGTSKAKKKAIIDDLSKRFLSTVIWTTPLKLPVVQPYREAKTRRVVTTLQ 1112
Query: 912 ILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
L+++ ++ V ++Q AFPPNF+HSLD +HMM++A+ C + GL+F+ VHDS+WTHA
Sbjct: 1113 TLSIKDPHSSDVVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAVHDSFWTHA 1172
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
D+D MNR+LR+ FV ++ I L F+ + K V+
Sbjct: 1173 GDIDTMNRVLRDAFVRMHSEDIVGRLASEFKARYSKHVY 1211
>gi|440637074|gb|ELR06993.1| hypothetical protein GMDG_02315 [Geomyces destructans 20631-21]
Length = 1438
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 311/888 (35%), Positives = 466/888 (52%), Gaps = 100/888 (11%)
Query: 193 KMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKE- 248
++RQ+K+E ++ A + +R+ + + L +L KSL W E L + +E
Sbjct: 360 RLRQIKLEEDSIISAVDRWRKESASLSKMGLDTSL-QTKSLGARMWKWQEALEQRLNQEL 418
Query: 249 -----------QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVV 297
+E+ ++ + Y P+ LP D +A +T+ M L + G +
Sbjct: 419 QSIDKAEATPEKEKSQLDVERCIYGPFLRYLPTDKLAAVTILTSMQCLSSHGTDKGMPLA 478
Query: 298 QAACIIGDAIEQEVRIHKFLEKTKKKN-ETKNKEDEEGDESNTV-TTEQEKLRKKVTDLI 355
IG +E E T K+ + NK G + ++ R+++TD +
Sbjct: 479 SVIMSIGANLEDESITETIRNNTTKQGWQQLNKSASAGKGLGLARVIKNKRTRQQLTDSL 538
Query: 356 KKQKLPAVRRIVKGQDDFK-----PWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADA 408
K VR + D W +AKVGS ++ L TA + + + +
Sbjct: 539 AK----LVRGDSAAKHDLSDQWNTEWSATIKAKVGSYLLSALIDTAKVPVTMENTKTQEL 594
Query: 409 PPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH-MVIPYMPMLVPPVK 467
I PAF+H + + K G KK G+I N ++ L+R H ++ ++PM+ P
Sbjct: 595 LTQIQPAFSH-----THQYKIG-KKTGMILANRALVASLKREPVHSLLAKHLPMVAEPEP 648
Query: 468 WTGYDKGAHFFLPSYVMRTHGA-KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRV 525
W+ +++G P+ +R G K QR + ++ +E +F+ LD LG T W +N V
Sbjct: 649 WSEFNQGGFISHPAKAVRIKGGDKNQRQYQEAAIRRGDMEQMFKGLDVLGKTSWVINRPV 708
Query: 526 LSVLDRIWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQ 582
+ W+ G +A+ + P PE P ++D + RKW ++ ++ HS
Sbjct: 709 FDTMLEAWNTGEAIANFPAEEPKLEYP-PEPPASKDPTERRKWIRSLKTIENTRSGFHSA 767
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
RC +L +AR ++ EE FY+PHN+DFRGRAYP+ PYLNH+G+D CRG+L+F +GR LG
Sbjct: 768 RCFQNFQLEIARSLR-EEKFYFPHNLDFRGRAYPIPPYLNHMGADHCRGLLKFGKGRELG 826
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
++GL WL++HLAN++ G DK S + R +T +H+DDI+DSA PL GRRWWL AEDP+Q
Sbjct: 827 EAGLKWLRVHLANIH--GHDKASLKEREQYTVDHIDDIYDSAMNPLNGRRWWLDAEDPWQ 884
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
CLA C+ L AL S P F+SH+PVHQDG+CNGLQHYAALG D GA VNL ++PA
Sbjct: 885 CLAACLELKNALDSGDPTKFVSHLPVHQDGTCNGLQHYAALGGDEWGARQVNLEPGDRPA 944
Query: 763 DVYSGIAARV--LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIG 820
DVY+ +A V + + R A++ L ++ RK+VKQTVMT+VYGVTYIG
Sbjct: 945 DVYNAVAELVNEKMAVDRKNGNKCAIW--------LEGKIKRKVVKQTVMTNVYGVTYIG 996
Query: 821 ARDQIKRRLKERGAPMEEAELFGASC---YAAKVTLTALGEMFQAARGIMSWLGECAKII 877
A+ Q++++L + F S Y A ALG MF+ A I WLGECA I
Sbjct: 997 AQAQVRKQLVAAHTDLPNEGSFNVSLLSGYVATKIFEALGTMFRGAHDIQFWLGECASRI 1056
Query: 878 ASENQP----------------------------------------VRWTTPLGLPVVQP 897
++ P V WTTPL +P+VQP
Sbjct: 1057 STSVTPQQLDRLEHLHEEALDQRVPRLNRYHISMVDAEQQLQFKSSVIWTTPLRMPIVQP 1116
Query: 898 YRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
YR TV+T+LQ +T+ ++ V ++Q FPPNFVHSLD +HMM++A+ C +AG
Sbjct: 1117 YRATKSRTVQTNLQQITISEPHRSDPVSKRKQLQGFPPNFVHSLDATHMMLSALKCDEAG 1176
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
L+FA VHDS+WTHA D+D MN +LR+ F++++ + L F +
Sbjct: 1177 LSFAAVHDSFWTHAADIDTMNGVLRDAFIQMHSDNVIARLAVEFDARY 1224
>gi|213406824|ref|XP_002174183.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
gi|212002230|gb|EEB07890.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
Length = 1169
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 324/915 (35%), Positives = 478/915 (52%), Gaps = 118/915 (12%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQ-KLAPNLPYMKSLFLGWFEPLRDAIAKE----- 248
RQ +E +A E + E+R ++ + + P+ + +L W+E L I +E
Sbjct: 294 RQRLMEKKALESSIAEWRHSYNEILRRGENPPHSRSLNALLYVWYEKLEALIQEEFRQIE 353
Query: 249 -QERCRMAKHK----VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
E + + +K YA Y L +A IT+ +++ + R A +
Sbjct: 354 DSENNKASPYKSRTRAEYAQYLKLLSPSKLAAITVLEMLTFVTNKRYCTGVRSTFALMSV 413
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL--P 361
G A E+E F E+ +K + EG+ +V +++ L +L
Sbjct: 414 GRAFEKEY----FSEQLQKI-------EAEGNLPKSVDSKK---------LFSSPRLFNS 453
Query: 362 AVRRIVKGQDD-------FKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF- 413
V++I +D+ ++PW + KV S + LL +A I+ A + +F
Sbjct: 454 FVKKIRDNEDNGIVQSSLYQPWSPNILVKVASVTVSLLINSAKIRDSALD-PETKSTVFQ 512
Query: 414 --PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWT 469
AF H R ++ +K GVI +P++ L E + H+ +PMLV P W
Sbjct: 513 DSSAFQHGYRYLA------GRKVGVIVAHPVLYDILASELSGAHLPPYRLPMLVKPRPWL 566
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSV 528
++ G +++ V+R + +Q +K QL+ + E L LGN W+VN +V +
Sbjct: 567 MWNSGGYYYSSESVLRFKESHEQLLYLKAASDSGQLKDLLEGLTALGNVGWKVNRKVYDM 626
Query: 529 LDRIWSCGGRLADLVDRND-VPLPEKPETEDEAQLR-KWQWKVRNVKKENRERHSQRCDI 586
L +IW+ G + N + + E PE + R +W ++ + +HSQRC+
Sbjct: 627 LVKIWNTGESFLSIPSANTTLDIQEMPEKSIDPSARAEWLRMLKERSLDFASQHSQRCEF 686
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
L +A+ E FY+PHNVDFRGRAYP+ +L+H+ SD CR +L FAEG+ LG+ G
Sbjct: 687 NYTLEIAKAFL-HETFYFPHNVDFRGRAYPIPSHLHHVNSDFCRSLLIFAEGKPLGEEGF 745
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
WLK+ LANL+ G +K + + R+ F +NHL DIF+S DKPL+G ++W KA+DPFQ LAV
Sbjct: 746 QWLKVQLANLF--GKNKSTIQERIDFVDNHLQDIFNSVDKPLDGEQFWTKADDPFQALAV 803
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C + +A+RS P +FISH+PV QDG+CNGLQHYAALG D GA VNL +P DVY+
Sbjct: 804 CFEIADAIRSGDPSSFISHVPVQQDGTCNGLQHYAALGGDPEGAREVNLEPSNRPNDVYA 863
Query: 767 GIAARVLVIIQRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
+AARV+ I++++A DP A+LL +V R ++KQ VMT+VYGVTY+GAR QI
Sbjct: 864 AVAARVISILKKEAAAGDPM-------AELLKDRVTRTVIKQPVMTNVYGVTYVGARAQI 916
Query: 826 KRRLK-ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA------ 878
+++LK + P + L AS + AK +L +F+ A I WL +CA +IA
Sbjct: 917 EKQLKLQEDIPKDL--LRDASAFLAKRVFQSLRALFKRAHEIQDWLADCAALIAHSVPEE 974
Query: 879 -------SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRT 929
+ V WTTPL LPVVQPYRK + T+LQ + L+ V ++Q T
Sbjct: 975 ALKQKELDKMTAVVWTTPLNLPVVQPYRKFPSKQITTNLQSVYLEDPDSNAPVDPRKQTT 1034
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
A PPNF+HSLD +HM MT + C+K +TF VHDSYWTHA V E+N +LRE FVEL+
Sbjct: 1035 AVPPNFIHSLDATHMFMTCLKCKKRNITFVSVHDSYWTHAASVAELNGLLREAFVELHSR 1094
Query: 990 PIFENLLDSFQ----------------------------------KSFPKLVFPPLPERG 1015
I +L F+ K + L FP +PERG
Sbjct: 1095 DILGDLKREFEDRYKNHYVHNHYPVDSPAGQYLLQQGATAKRSVVKGWAPLTFPEVPERG 1154
Query: 1016 DFDLREVLGSPYFFN 1030
FD+R VL S YFF+
Sbjct: 1155 TFDIRSVLHSQYFFS 1169
>gi|432853790|ref|XP_004067873.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Oryzias
latipes]
Length = 1366
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 288/702 (41%), Positives = 409/702 (58%), Gaps = 69/702 (9%)
Query: 370 QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD--IFPAFTHALRTVSKET 427
Q D W ++G+ +++++ + I S + + D + P H T
Sbjct: 693 QGDDTSWPHIVTLELGTHLVDIMVKNLKINS---DILNPSQDRKLIPILYHMY------T 743
Query: 428 KGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYV 483
+++ G I+ +P++++ +++ A + + MPML PPV WT GA+ P+ +
Sbjct: 744 FRSTRQVGFIKPHPILVQ-MQQEAMETRLTFDSYVMPMLCPPVPWTSVKFGAYVLTPTKL 802
Query: 484 MRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
MRT GA Q ++++ + LEPVF++L+ LGN W++N +L ++ I++ G
Sbjct: 803 MRTVEGATQHEQLLEKS--QHLEPVFDSLNQLGNCAWKINKPLLDIIISIFNDRGS---- 856
Query: 543 VDRNDVPLP--EKPET-----EDEA----QLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
D+ D+P P E P+ +D A Q + +V N KK+ E HS R D KLS
Sbjct: 857 -DKLDIPPPMSEAPKIPHFNPQDPAYTASQKALMKREVINAKKKGSEMHSLRMDALYKLS 915
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+A M+ EE F++PHN+DFRGR YP PY NHLGSD+ R +L FAEG+ LG GL WLKI
Sbjct: 916 IAHHMR-EETFWFPHNMDFRGRTYPCPPYFNHLGSDVTRAMLVFAEGKPLGPKGLDWLKI 974
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
HL NL G + S +GRL + + ++DI DSAD PL GR+WW+ A++P+Q LA C+ +
Sbjct: 975 HLVNL-TGLKKRSSLQGRLQYANSIMEDILDSADNPLHGRKWWMNADEPWQALACCMEIA 1033
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
A RS P F+SH PVHQDGSCNGLQHYAALGRD +GA +VNLV + P DVYSG+A +
Sbjct: 1034 RAARSPDPAKFVSHFPVHQDGSCNGLQHYAALGRDVIGATSVNLVPCDVPQDVYSGVAQQ 1093
Query: 772 VLVIIQRDAQRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
V + RDA+ D L+ A++L + RK+VKQTVMT VYGVT G R QI++RLK
Sbjct: 1094 VEELRARDAR-------DGLKIAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLK 1146
Query: 831 E-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTP 889
E P E ++ AS Y ++ L EMF R I WL E A++I+ V W TP
Sbjct: 1147 EIENFPKE--HIWDASHYLVRLVFNGLKEMFTGTREIQDWLTESARLISKCGHTVEWVTP 1204
Query: 890 LGLPVVQPYRKLGRHTVKTSLQILTLQ---RETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
LGLP++QPY + +K+S+Q + LQ E+ +Q+ AFPPNF+HSLD +HMM+
Sbjct: 1205 LGLPIIQPYHRTRNQVLKSSIQHINLQISHDSKERPDTVKQKNAFPPNFIHSLDSTHMML 1264
Query: 947 TAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPK- 1005
TA+ C AGLTF VHD +WTHA VD MN++ RE+FV L+ PI + L D +
Sbjct: 1265 TALHCYSAGLTFVSVHDCFWTHALTVDTMNKVCREQFVALHSQPILQELSDFLLHKYCSG 1324
Query: 1006 -----------------LVFPPLPERGDFDLREVLGSPYFFN 1030
L+ +P+ GDFDL++V S YFF+
Sbjct: 1325 SGAEAKSKKYQEYRRLMLLLTKVPQTGDFDLQQVKESTYFFS 1366
>gi|401625948|gb|EJS43925.1| rpo41p [Saccharomyces arboricola H-6]
Length = 1351
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 312/860 (36%), Positives = 461/860 (53%), Gaps = 88/860 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E A E A ++ D E K ++ K+L W+ + + +E +
Sbjct: 415 RQKVLENRATEAARERWKH---DFEEAKARGDISIEKNLNAKLWRWYNDMLPLVKEEIKH 471
Query: 252 CRMAK---------------HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARV 296
C+ + +++ Y PY + M VIT+ +L+ L TGG R
Sbjct: 472 CKSSLSEKPTDKKGLTKVEINRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRT 531
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK 356
+A +G AIE E R + L K+E++ D N + E +KL + + +
Sbjct: 532 ARAVISVGKAIEMEFRSEQVL-----KSESQTFRD-----VNKKSPEFKKLVQNAKSVFR 581
Query: 357 KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SPADQLADAPPD-IFP 414
++ + + W Q+ RA++GS +I +L A + D + A P
Sbjct: 582 SSQIEQSKIL---------WPQNIRAQIGSVLISMLIHVAKVSVQGVDPITKAKVHGEAP 632
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYD 472
AF H + GSK GV++ + ++ L ER + +PMLV P W +
Sbjct: 633 AFAHGY-----QYHNGSK-LGVLKIHKTLIHQLNGERLIASVQPQLLPMLVEPKSWINWR 686
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
G + + S ++RT + +Q +K + ++ V++ L+ LGNT W VN +V V+ +
Sbjct: 687 SGGYHYTQSTLLRTKDSPEQVAYLKAASENGDIDRVYDGLNVLGNTPWTVNRKVFDVVSQ 746
Query: 532 IWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
+W+ D+ D V P P D + LR W+ +V+ + + S RCD K
Sbjct: 747 VWNKREGFLDIPGAQDEMVLPPAPPRNSDPSILRTWKLEVKTIANKFSSDRSNRCDTNYK 806
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F G+ LG SGL WL
Sbjct: 807 LEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWL 865
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIHL+NL+ G DKL E R++FTE+HL+DI DSA+ PL G+ WW A+ P+Q LA C
Sbjct: 866 KIHLSNLF--GFDKLRLEDRVSFTESHLEDIKDSAENPLTGQGWWKTADKPWQALATCFE 923
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L E ++ +PE FISH P+HQDG+CNGLQHYAALG D GA VNLV +KP DVY+ +A
Sbjct: 924 LNEVMKMDNPEDFISHQPIHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVA 983
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
V ++ A++ AK+L ++ RK+VKQTVMT+VYGVTY+GA QI ++L
Sbjct: 984 RLVQKRLEIAAEKGDE------NAKILQDKITRKVVKQTVMTNVYGVTYVGATFQIAKQL 1037
Query: 830 KERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------- 880
+P+ + E S Y K A+ E+F +A I WLGE AK I+
Sbjct: 1038 ----SPIFDDRKESLDFSKYLTKHVFGAIRELFHSAHLIQDWLGESAKRISKSIRLDVDE 1093
Query: 881 ------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQ 927
N+P V WTTPLGLP+VQPYR+ + V+T+LQ + + V +RQ
Sbjct: 1094 KSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQ 1153
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+ PPNF+HSLD SHM+++A C + GL FA VHDSYWTHA DVD M+ +LRE+F++L+
Sbjct: 1154 KAGLPPNFIHSLDASHMLLSAAECGEKGLDFASVHDSYWTHASDVDTMSVVLREQFIKLH 1213
Query: 988 EMPIFENLLDSFQKSFPKLV 1007
E+ + L + F + + V
Sbjct: 1214 EVDLVLRLKEEFGQRYKNYV 1233
>gi|254583510|ref|XP_002497323.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
gi|238940216|emb|CAR28390.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
Length = 1311
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 302/792 (38%), Positives = 435/792 (54%), Gaps = 78/792 (9%)
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
+QER R+ Y PY + + M VIT+ +L+ L TGG R +A +G AI
Sbjct: 450 KQERARLD-----YGPYLSLVDPEKMCVITILELLKLNSTGGIIEGMRTARAVISVGKAI 504
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
E E R + L K+E++ D + +L+K + Q+ + R +
Sbjct: 505 EMEFRSEQLL-----KSESQAFRD--------LGKNSHELKKYL------QRAKSTFRSM 545
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF---PAFTHALRTVS 424
K +++ W Q ARAK+GS +I +L + ++ ++ PAF H
Sbjct: 546 KIEENKIMWPQAARAKIGSILISMLIHVSKVEVEGVDPV-TKQKVYGEAPAFAHGY---- 600
Query: 425 KETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
+ GSK GV++ + ++ L ER + +PMLV P W + G +++ S
Sbjct: 601 -QYHNGSK-LGVLKIHRSLVHQLNGERLVASVQPQLLPMLVKPRPWKNWKSGGYYYTQST 658
Query: 483 VMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD 541
++R+ + +Q +K + + V++ L+ LG T W VN + V+ ++W+ G D
Sbjct: 659 LIRSKDSPEQIAYLKAVSDATAINTVYDGLNVLGETPWTVNRPLFEVMSKVWNSGKPFLD 718
Query: 542 L--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
+ V LP P D + R+W+ K + + S RCD KL +AR E
Sbjct: 719 IPGVQEKLTLLPPPPREADPSVHREWKLKNKELANRFSSNRSTRCDSNYKLEIARAFLGE 778
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
+ FY+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F G+ LG GL WLK+HL+NL+
Sbjct: 779 K-FYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLLFWNGKRLGPQGLKWLKVHLSNLF-- 835
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
G DK S R+ F + H+DDI SA PL+ WW+KAE P+Q LA C+ L +A++ +P
Sbjct: 836 GFDKASLLERVQFADEHIDDIKQSAQDPLKEDAWWMKAEKPWQALATCMELNDAMKLDNP 895
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
E FISH PVHQDG+CNGLQHYAALG D GA VNLV ++P DVY+ +A V+ ++
Sbjct: 896 EDFISHQPVHQDGTCNGLQHYAALGGDIDGATQVNLVPNDRPQDVYAHVAKLVIARLEIA 955
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL----KERGAP 835
A + V A +L ++ RK+VKQTVMT+VYGVTY+GA QI ++L ++R
Sbjct: 956 AAKGDEV------AMILKDKITRKVVKQTVMTNVYGVTYVGATFQIDKQLSNIFEDRKYS 1009
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------NQ 882
+E S Y K A+ E+FQ A I WLGECAK I+ N+
Sbjct: 1010 LE------LSKYLTKHVFGAVRELFQGAHLIQDWLGECAKRISKSIRLDVDEKSFKNGNK 1063
Query: 883 P-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE--TEKVMVKRQRTAFPPNF 935
P V WTTPLGLP+VQPYR+ + V T+LQ + + V +RQ+ FPPNF
Sbjct: 1064 PDFMTSVIWTTPLGLPIVQPYRETSKKQVTTNLQTVFISDPFGVNPVNARRQKAGFPPNF 1123
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+HSLD SHM+++A C + GL FA VHDSYWTHACDVD MN LRE+F+ L+E+ + E L
Sbjct: 1124 IHSLDASHMLLSAAECGRNGLDFASVHDSYWTHACDVDNMNVFLREQFIRLHEVDLIERL 1183
Query: 996 LDSFQKSFPKLV 1007
D F + + V
Sbjct: 1184 KDEFDERYKNYV 1195
>gi|402220117|gb|EJU00189.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 988
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 318/883 (36%), Positives = 472/883 (53%), Gaps = 113/883 (12%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAP-NLPYMK--SLFLGWFEPLRDAIAKE--- 248
RQ +E A+ AA +R +M +A N +MK W++ L++ + E
Sbjct: 22 RQRLMEESAYMVAAQRWRHQAEEMTHHNVAGWNTQHMKLKKWMWNWYQALKERLDNEIPT 81
Query: 249 -QERCRMAKHKV-----AYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
+E ++A+ + A P+ L + MA +T+ +L L G G R + A
Sbjct: 82 LEEEEKLAQRRKPTDGDAIGPFLRLLSTEKMATMTISEL---LRYGTSDGGVRTARTAIT 138
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
+G +EQE L + + G + +T+E +L A
Sbjct: 139 LGRVVEQEYNAEVALAQRSR-----------GPDPVVLTSEGSL-----------TELAA 176
Query: 363 VRRIVKGQDDFK-----PWGQDARAKVGSRVIELLTQTAYIQ------SPADQLADAPPD 411
+R+ + +DF W Q R +VG ++ + A I S +++++ P
Sbjct: 177 IRQQARDSEDFTMAIPPDWTQVIRGRVGGFLLNAVIDVATITRRGIRPSTGEEVSEEQP- 235
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLE-RTARHMVIP-YMPMLVPPVKWT 469
AF H + +K G+I+ NP + + L + + P +PML+PP W
Sbjct: 236 ---AFAHCYEFLH------GRKIGLIKFNPELTEQLSSEPIKDALHPRQLPMLIPPRPWI 286
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
++GA+ + + VMR + +Q ++ + LE ++ ALD LG+T W +N + V
Sbjct: 287 DVERGAYMYSRTSVMRYKDSLEQSSFLRSASSAGHLESMYAALDVLGSTPWTINRPIFDV 346
Query: 529 LDRIWSCGGRLADL----VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRC 584
+ +W+ G + A + ++ D P+ ET+ +A+ R + + ++ E HS RC
Sbjct: 347 VIAVWNSGKQFAKIPPAGLEGEDPVKPDNYETDPKAK-RDFVRAMSTSIQKRHENHSMRC 405
Query: 585 DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS 644
D KL +AR E FY+PHNVDFRGRAYP+ P LNH+G DLCRG+L FA+ + LG+
Sbjct: 406 DTNYKLEIARAFLGER-FYFPHNVDFRGRAYPVPPNLNHMGDDLCRGLLTFADKKALGER 464
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
GL WLKIH AN + G DK S E R+ +T HLD+I+DSA KPL+G+RWWLKA+DP+Q L
Sbjct: 465 GLRWLKIHAANKF--GYDKASFEERVTWTMEHLDEIYDSAKKPLDGQRWWLKADDPWQFL 522
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A CI L AL S +P F S +PVHQDG+CNGLQHYAALG D GA VNL ++PADV
Sbjct: 523 ASCIELHNALESPNPAEFESSLPVHQDGTCNGLQHYAALGGDGQGARQVNLDVGDRPADV 582
Query: 765 YSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQ 824
Y+ +A V + + D A +AK L ++ RK+VKQTVMT+VYGVT++GARDQ
Sbjct: 583 YTFVANMV------EKRLDEAAAKGDEKAKWLQGRIARKVVKQTVMTTVYGVTFVGARDQ 636
Query: 825 IKRRLKER-GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-CAKIIAS--- 879
I+++++ G + E E + + Y A++TL+ +G++F A+ I WL + CA I S
Sbjct: 637 IRKQIEALPGVSISEQESYAMAVYVARLTLSCIGDLFGGAKSIQLWLNKVCALITKSIPP 696
Query: 880 ----------------ENQPVR---------------WTTPLGLPVVQPYRKLGRHTVKT 908
N P++ WTTPLG+PVVQPYRK + + T
Sbjct: 697 ERIDLLLRDKEYAGEVRNAPMKRTYTSLVKEQMTSMIWTTPLGMPVVQPYRKQAKKQIYT 756
Query: 909 SLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
SLQ L + +V ++Q +AFPPNF+HSLD +HMM+TA+ CR LTFA VHDSYW
Sbjct: 757 SLQSLFIADPNLPMEVSSRKQASAFPPNFIHSLDATHMMLTALGCRDKQLTFASVHDSYW 816
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
THA +DEM+ +R+ FV+L+ I NLL Q+ + P
Sbjct: 817 THAASIDEMSATIRDTFVKLHSADILGNLLLEIQQRYKDYKVP 859
>gi|344232068|gb|EGV63947.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1279
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 312/869 (35%), Positives = 460/869 (52%), Gaps = 90/869 (10%)
Query: 193 KMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQ 249
+ RQ IE + A +++ D E + ++ + KSL W+E L + +E
Sbjct: 344 RARQRTIELRGADSAKEKWKH---DYEEMQRRGSIHFAKSLNARLYEWYEMLLPFVKEEV 400
Query: 250 ERCR------------------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH 291
+C + K + YAPY + + M +T+ +L+ L TGG
Sbjct: 401 NQCHKIMDGEITIQNAKSEDRALVKERSYYAPYLTLVTPEKMCAVTILELLRLNSTGGIA 460
Query: 292 GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKV 351
R +A +G AIE E + K +E KK K++ E + K+ + +
Sbjct: 461 DGMRTARALISVGKAIELEYKSQKLMESEKKSISKKSRSAREWN----------KIFRVM 510
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
+ K A W AK+GS + LL A + A
Sbjct: 511 NNYSKDSDNQA----------HNEWDNTLHAKIGSILTSLLIHVAKVPVKGTDPATGKTV 560
Query: 412 IF--PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVPPVK 467
PAF H + + +K GV++ + ++K L ++ ++PML PP K
Sbjct: 561 TGSQPAFFHTYQYLQ------GQKLGVLKLHKNIIKQLSVDVDGSLLQPHFLPMLTPPRK 614
Query: 468 WTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVL 526
W+ Y++G + F + ++RT + + +K ++ L+ V++ L+ LGNT W VN +VL
Sbjct: 615 WSSYNEGGYLFSQNTLVRTRDSPETLAYLKAASQRGDLDKVYDGLNVLGNTPWTVNRKVL 674
Query: 527 SVLDRIWSCGGRLADL---VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQR 583
V+ + W+ G D+ VD ++P P P + LR++Q KVR + SQR
Sbjct: 675 EVMTKFWNTGDEFLDIPPVVDEPELPEP-VPSNAEPNVLREYQRKVRLAINISASAKSQR 733
Query: 584 CDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGK 643
CD KL +AR E+ F+ PHN+DFRGRAYPM P+ NHLG+DL R + F +G+ LG+
Sbjct: 734 CDTNYKLEIARAFLGEKMFF-PHNIDFRGRAYPMSPHFNHLGNDLTRSLFLFWDGKQLGE 792
Query: 644 SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQC 703
GL WLK+HLANLY GVDK+ E R FTE HLD I +SA+ P + WW K E P+Q
Sbjct: 793 RGLWWLKVHLANLY--GVDKIPLEERAQFTETHLDKIRESAETPFDKDAWWTKGEKPWQV 850
Query: 704 LAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPAD 763
LA C L EA + P ++SH+PVHQDGSCNGLQHYAALG D GA VNL ++P D
Sbjct: 851 LACCFELNEAYKLEDPTQYVSHVPVHQDGSCNGLQHYAALGGDIEGARQVNLYPADRPQD 910
Query: 764 VYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARD 823
VYS +A+ V + DA+ A L +++R++VKQTVMT+VYGVT++GAR+
Sbjct: 911 VYSSVASIVQQRVDADAEAGEK------HAVFLKDKINRRVVKQTVMTNVYGVTFVGARE 964
Query: 824 QIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA----- 878
QIK++LK E + Y + A+ E+F A I WLGE A+II+
Sbjct: 965 QIKKQLKVHFDSDSEENSGEYAQYLTQHVFAAVRELFSGAHLIQDWLGEAARIISKSVRV 1024
Query: 879 -------SENQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV-- 924
S ++P V WTTPLGLP VQPYR + + +KT+LQ + + +V
Sbjct: 1025 DYEDSTTSNDKPNHVSSVIWTTPLGLPCVQPYRTIKKQIIKTNLQDVAITDPFGASLVDA 1084
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
++Q+TA PPNFVHSLD +HM+MTA C+ ++FA VHDSYWTHA D+D +++ILRE+F+
Sbjct: 1085 RKQKTALPPNFVHSLDATHMLMTASTCKYENISFASVHDSYWTHASDIDVLSKILREQFI 1144
Query: 985 ELYEMPIFENLLDSFQ---KSFPKLVFPP 1010
+L+ + + + D F+ K F ++V P
Sbjct: 1145 KLHSENLIQKVKDEFEARYKGFLQVVTIP 1173
>gi|406603686|emb|CCH44839.1| DNA-directed RNA polymerase, mitochondrial [Wickerhamomyces ciferrii]
Length = 1332
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 310/868 (35%), Positives = 466/868 (53%), Gaps = 93/868 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E ++ E A +++ + E K +L KSL GWFE + + E ER
Sbjct: 363 RQTALENKSIEAAQEKWKH---EYEEIKKRGDLGMSKSLNARLWGWFEQMMPLVRDEIER 419
Query: 252 CR--------------MAKH--KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRAR 295
C+ A+H + YAPY L + VIT+ +++ TGG R
Sbjct: 420 CKNVDDIQIKTLKNEAFAQHSERKKYAPYLRLLDPKKVTVITILEMLKNNSTGGISEGMR 479
Query: 296 VVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLI 355
+A + A+E E R + L +KN KN ++ + + L D+I
Sbjct: 480 TARAVLSVSKALELEFRSEQIL--NTEKNFVKNFDNSKLSNPKNLKKYSMSLSNFKNDVI 537
Query: 356 KKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SPAD----QLADAPP 410
K+ W QD + K+GS +I +L A ++ S D QL
Sbjct: 538 SDMKVY--------------WPQDIKVKIGSVLISILMHVAKVEVSGVDPSTKQLVRGEA 583
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKW 468
PAF H+ + K G+++ + ++ L ++ + +PML+ P W
Sbjct: 584 ---PAFYHSFQY------HNGAKIGILKIHKVLSSQLSADKLVGAVQPQSLPMLIQPRPW 634
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
T ++ GA+++ + ++R + +Q +K + K L+ V++ L+ LGNT W VN RV V
Sbjct: 635 TSWNNGAYYYSQNQIIRLRDSPEQLAYIKASSDK-LDKVYDGLNVLGNTAWTVNERVFKV 693
Query: 529 LDRIWSCGGRLADLVDRND-VPLPE-KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
+ +IW+ G D+ ++ + LPE P + D + L +W+ KV+ ++ + S RCD
Sbjct: 694 MSKIWNTGDEFLDIPKAHESLELPEVPPRSSDPSVLNEWKIKVKALQDKYATDRSTRCDA 753
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
KL +AR E+ FY+PHN+DFRGRAYP+ P NH+GSDL RG+L F +G+ +G+ GL
Sbjct: 754 NYKLEIARAFLGEK-FYFPHNLDFRGRAYPISPNFNHMGSDLSRGLLLFWKGKEIGEEGL 812
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
WLKIHLANL+ G+DK R AF ++++ + +A+ P+ + WW KA+ P+Q LA
Sbjct: 813 RWLKIHLANLF--GIDKAPLNEREAFVNDNIELVKRAAEDPMANQEWWTKADKPWQALAT 870
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
I+L +AL+ P ISH PVHQDG+CNGLQHYAALG D GA VNL +KP DVY+
Sbjct: 871 IIDLADALKLPDPTKHISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLAPSDKPQDVYT 930
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A V ++ A A++L + RK+VKQTVMT+VYGVT +GA +QI
Sbjct: 931 HVAKLVRAKLEEAAANGDE------NARMLKDNIKRKVVKQTVMTNVYGVTQVGATNQIH 984
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS------- 879
++L+ E + + S Y KV ++ E+F+ A I WL CAK+I+
Sbjct: 985 KQLQN---VFSEDQSYKLSVYLTKVVFASMRELFEGAHLIQDWLAICAKMISKSVRIDID 1041
Query: 880 -------ENQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVK 925
+ +P V WTTPL LP+VQPYR + + ++T+LQ + +Q E +V +
Sbjct: 1042 SYEEMGPKKKPSFMASVIWTTPLDLPIVQPYRAIVKKQIQTNLQTVFIQDPYELHQVDAR 1101
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
+Q AFPPNF+HSLD SHM+++A +C K GL FA VHDSYWTHACDV EM+ LRE F+E
Sbjct: 1102 KQMAAFPPNFIHSLDASHMLLSASSCSKKGLEFAAVHDSYWTHACDVGEMSESLRETFIE 1161
Query: 986 LYEMPIFENLLDSFQ---KSFPKLVFPP 1010
L+++ + L D F K F +L+ P
Sbjct: 1162 LHQVDLIARLKDEFDERYKGFLQLIEIP 1189
>gi|367011305|ref|XP_003680153.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
gi|359747812|emb|CCE90942.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
Length = 1321
Score = 514 bits (1323), Expect = e-142, Method: Compositional matrix adjust.
Identities = 300/783 (38%), Positives = 429/783 (54%), Gaps = 81/783 (10%)
Query: 261 YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKT 320
Y Y + + M VIT+ +L+ L TGG R +A +G AIE E R + L
Sbjct: 468 YGAYLSLVDPEKMCVITILELLKLNSTGGVIEGMRTARAVIAVGKAIEMEFRSEQLL--- 524
Query: 321 KKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDA 380
K+E + +D V + + +K V Q+ R +K ++ W Q A
Sbjct: 525 --KSELQIFKD--------VNRKSHEFKKYV------QRAKNSFRSIKIEESKVVWPQAA 568
Query: 381 RAKVGSRVIELLTQTAYIQSPADQLADAPPDI-------FPAFTHALRTVSKETKGGSKK 433
RAK+GS +I +L A + L P PAF+H + GSK
Sbjct: 569 RAKIGSIMISMLIHVAKVD-----LEGIDPVTKQKVHGEAPAFSHGY-----QYHNGSK- 617
Query: 434 YGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
GV++ + ++ L ER + +PMLV P W ++ G +++ S ++R+ + +
Sbjct: 618 LGVLKIHRSLIHQLNGERLVASVQPQLLPMLVKPRPWKSWNSGGYYYTQSSLIRSKDSPE 677
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL--VDRNDV 548
Q +K ++ V++ L+ LG T W VN RV V+ +W+ G ++ +
Sbjct: 678 QMAYLKAVSNAGAIDTVYQGLNVLGETAWTVNRRVFDVMSEVWNSGKDFLEIPGIQEKLD 737
Query: 549 PLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
LP P D + R+W+ K + + + S RCD KL +AR E+ FY+PHN+
Sbjct: 738 LLPAPPRESDPSVHREWKLKNKEIANKFSSNRSVRCDSNYKLEIARAFLGEK-FYFPHNL 796
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGRAYP+ P+ NHLG+D+ RG+L F +G+ LG GL WLK+HL+NL+ G DK
Sbjct: 797 DFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKRLGPRGLKWLKVHLSNLF--GFDKAPLAD 854
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
R+A+ E HL D+ SA+ PL G WW+KA+ P+Q LA CI + EA + +PE FISH PV
Sbjct: 855 RIAYAEAHLKDVKRSAEDPLAGDGWWMKADKPWQALATCIEINEAYKLPNPEDFISHQPV 914
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
HQDG+CNGLQHYAALG D GA VNLV ++P DVY+ +A V A+ + A
Sbjct: 915 HQDGTCNGLQHYAALGGDIEGATQVNLVPNDRPQDVYAHVAKLV------QARLEAAAAK 968
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK----ERGAPMEEAELFGA 844
+A+ L ++ RK+VKQTVMT+VYGVTY+GA QI+++L +R +E
Sbjct: 969 GDEQAETLKDKITRKVVKQTVMTNVYGVTYVGATFQIEKQLSHIFDDRTYSLE------L 1022
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------NQP-----VRW 886
S Y K A+ E+F A I WLGECAK I+ N+P V W
Sbjct: 1023 SKYLTKHVFAAVRELFHGAHLIQDWLGECAKRISKSIRLDVDEKSFKNGNKPDFMSSVIW 1082
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHM 944
TTPLGLP+VQPYR+ + V T+LQ + + V +RQ+ FPPNF+HSLD SHM
Sbjct: 1083 TTPLGLPIVQPYREASKKQVTTNLQTVFISDPFSVNPVNARRQKAGFPPNFIHSLDASHM 1142
Query: 945 MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP 1004
+++A AC + GL FA VHDSYWTHACDVD+MN LRE+F++L+E+ + E L + F + +
Sbjct: 1143 LLSAAACGEEGLDFASVHDSYWTHACDVDQMNSCLREQFIKLHEVDLIERLKNEFDERYK 1202
Query: 1005 KLV 1007
V
Sbjct: 1203 NYV 1205
>gi|388578906|gb|EIM19238.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 1136
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 317/886 (35%), Positives = 467/886 (52%), Gaps = 101/886 (11%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNL---PYMKSLFLGWFEPLRDAIAKEQER 251
RQ +E A+E A + + ++ + ++ L P K ++ W + D AK Q+
Sbjct: 145 RQRLLEESAYETAKARFEHEMNELEKAGVSTALSGHPLQKLMWDWWKKVSVDIQAKLQKS 204
Query: 252 CRMAKHKVA-------YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
K P+ L ++ M++IT+ +++ L TGG + +A +G
Sbjct: 205 METTNPKTKEEKFMNEITPFLSLLSSEKMSLITVLEILRLSGTGGIAEGMKTTRALLSVG 264
Query: 305 DAIEQE------------------------VRIHKFLEKTKKKNETKNKEDE-EGDESNT 339
A+E E R ++ + K + E K E G +
Sbjct: 265 KAVENEHHAEILKQKHGISLKGVEADAKQVKRKLRYFDHRKAEKELDLKSPEFTGLIDDA 324
Query: 340 VTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDD--FKP-WGQDARAKVGSRVIELLTQTA 396
+ T ++ D+ ++ A R+V+ + + + P W Q R KVGS +++ L + A
Sbjct: 325 MGTSEQSPEAHSHDIASER---AKARVVEERMNKAWTPNWSQIIRIKVGSFLVDSLMECA 381
Query: 397 YIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHM 454
I A + + + PAF+ + + V KK GVI+ N V L++
Sbjct: 382 TITRTAKHPESGEEMTEAQPAFSQSYQYVR------GKKLGVIKVNTAVADRLDKDPLGS 435
Query: 455 VIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTV-KRTPKKQLEPVFEAL 511
I ++PMLV P W YD G + F + MR + +Q+ + K + + +EPV L
Sbjct: 436 TIHPRHLPMLVKPKPWLRYDSGGYLFHKNSAMRFKDSNEQQSYILKASSEGTMEPVLAGL 495
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD-RNDVPLPEKPETE--DEAQLRKWQWK 568
D LG T W +N +V +V+ W+ G LA + P P KP D + +
Sbjct: 496 DVLGATPWNINRKVFNVVKEAWNTGEGLAKIPPATTKTPDPVKPANYAIDPKERSNYLQS 555
Query: 569 VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDL 628
++ V E R HS RCD KL +AR +E FY+PH +DFRGRAYP+ P+LNH+G DL
Sbjct: 556 MKAVVNERRNNHSIRCDTNYKLEIARAFLNET-FYFPHTLDFRGRAYPIPPHLNHIGDDL 614
Query: 629 CRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
RG+L FAE R LG+ G+ WLKIHLAN+Y G DK S R F + H+++I+DSAD PL
Sbjct: 615 SRGLLIFAEKRPLGEKGMRWLKIHLANVY--GYDKASFNEREQFADEHMEEIYDSADNPL 672
Query: 689 EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
GR+WWLKA+DP+QCLA C + A+ S +P + S +PVHQDG+CNGLQHYAALG D +
Sbjct: 673 NGRKWWLKADDPWQCLAACYEIQAAMLSPNPLAYESALPVHQDGTCNGLQHYAALGGDPM 732
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808
GA VNL ++P+DVY+ +A V+ I++DA F AK+L ++ RK+VKQT
Sbjct: 733 GAKQVNLEQGDRPSDVYTAVADLVIEDIKKDALESDNEF-----AKILEGKITRKVVKQT 787
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
VMT+VYGVT+IGARDQI ++L++RG + + +++ + Y AK L ++G++F A I
Sbjct: 788 VMTTVYGVTFIGARDQIDKQLQDRGD-IPQDKVYTTASYLAKKVLRSIGDLFAGANAIQK 846
Query: 869 WLGECAKIIASENQPVR-----------------------------------WTTPLGLP 893
WL A+ IA P R WTTPLGLP
Sbjct: 847 WLSMSARYIAKSIPPERLIRALEPLEAKRKNSPANKGNVSTRTAKEQMTSVIWTTPLGLP 906
Query: 894 VVQPYRKLGRHTVKTSLQILTLQRETEKVMVK--RQRTAFPPNFVHSLDGSHMMMTAVAC 951
+VQPYRK + V T LQ + L V +Q +AFPPNF+HSLD +HM++TA+ C
Sbjct: 907 IVQPYRKAKKKQVATLLQSVYLADPNIPTEVNPIKQASAFPPNFIHSLDATHMVLTALQC 966
Query: 952 RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD 997
+ G+T+A VHDSYWTHA VD M+ I+R+ FV+L+ I + L D
Sbjct: 967 SQIGITYASVHDSYWTHASTVDHMSEIIRDTFVKLHCEEILKRLRD 1012
>gi|388858367|emb|CCF48096.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial [Ustilago
hordei]
Length = 1536
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 301/808 (37%), Positives = 446/808 (55%), Gaps = 96/808 (11%)
Query: 263 PYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKK 322
P+ +P +A+IT+ ++M + GG + +A +G AIE E + +
Sbjct: 600 PFLRLVPVSKLALITILEIMRMSGNGGVADGMKTTRALLAVGRAIEME-----YHSDVVR 654
Query: 323 KNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDD------FKPW 376
KN + T Q LRK+ LI +R K Q++ W
Sbjct: 655 KNPRIFQ---------NAHTAQTVLRKR--GLINLAARNEIRAWQKQQEEEGVLSSIPKW 703
Query: 377 GQDARAKVGSRVIELLTQTAYIQSPA-DQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
Q RA+VGS +++ L A + A D+ + PAF + + G KK G
Sbjct: 704 TQAVRARVGSYLVQHLMHVANVSRKATDRDGVLWEEDQPAFYSTYQYL------GGKKLG 757
Query: 436 VIECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
VI+ N ++ + L++ + + ++PMLVPP WT +D G ++ + MR + +Q
Sbjct: 758 VIKLNEVIAQRLDKDSMQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRYKDSAEQG 817
Query: 494 DTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL--VDRNDVPL 550
++ + ++ + ALD LGNT W++N + V+ IW+ G A + VD + P
Sbjct: 818 SYLRAASDTGDVDTILAALDVLGNTSWKINKPIFDVMLEIWNSGKDTAGMPPVDM-EQPE 876
Query: 551 PEKPETEDEAQLRKWQWKVRNVKKENRE---RHSQRCDIELKLSVARKMKDEEGFYYPHN 607
P+KP+ + ++ ++ +K+ N++ HSQRCD+ KL +AR E FY+PHN
Sbjct: 877 PQKPDNYNH-DMKARSVYLQRLKQWNQQCASNHSQRCDVNYKLEIARAYLGER-FYFPHN 934
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
+DFRGRAYPM P+LNH+G+DLCRG+L FA+ + LGK+GL WL+IH++N++ G DK S
Sbjct: 935 MDFRGRAYPMPPHLNHIGNDLCRGLLMFADAKPLGKTGLRWLRIHISNVF--GYDKASFG 992
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL-RSSSPETFISHI 726
R F +H DI DS ++ L+G+RWWLKA+DP+QCLA C+ L AL PE + S++
Sbjct: 993 EREQFAIDHEADIRDSVERTLDGQRWWLKADDPWQCLAACMELKAALDHPDGPEAYESNL 1052
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
PVHQDG+CNGLQHYAALG D GA VNL ++PADVYSG+A V+ ++ +A + +
Sbjct: 1053 PVHQDGTCNGLQHYAALGGDLAGAKQVNLSRGDRPADVYSGVADLVIKMLDEEAAKGERL 1112
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-APMEEAELFGAS 845
A +L +V RK+VKQTVMT+VYGVT+IGA++Q+ R+L RG P E +LF A+
Sbjct: 1113 ------ATILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLAARGDVPAE--DLFQAA 1164
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------------NQP---------- 883
+ AK+ ++ +G +F A+ I WL AK+IA QP
Sbjct: 1165 SFLAKIIMSCIGNLFSGAQKIQDWLIFSAKVIAKSIPSQRVEEATRPYQPSETNLKRADA 1224
Query: 884 --------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEK 921
V WTT LGLPVVQPYRK + + T++Q + + +
Sbjct: 1225 RGYSRDPAKADRIVKEQMTSVIWTTALGLPVVQPYRKTKKRQISTAMQTVFINDPHSNSE 1284
Query: 922 VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
V +Q +AFPPNF+HSLD +HM++TA+ C AGLTFA VHDSYWTHA D+D M+ ++RE
Sbjct: 1285 VSPAKQASAFPPNFIHSLDATHMILTALECHAAGLTFASVHDSYWTHAADIDTMSDMIRE 1344
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVFP 1009
FV L+ I L + F + + P
Sbjct: 1345 TFVRLHSQDILHRLREEFMQRYAGYKVP 1372
>gi|409082678|gb|EKM83036.1| hypothetical protein AGABI1DRAFT_69188 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 967
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 290/791 (36%), Positives = 449/791 (56%), Gaps = 74/791 (9%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
+PY + + +++IT+ ++M L + G + +A +G A+E E + + K
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEYKA----QMIK 145
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
K + + + G+ + + ++ ++L AV + ++G++ W Q R
Sbjct: 146 KPDNVADSKSAGGNLYSHAAYKN----------LRDKRL-AVSKEIEGEERSLGWSQVTR 194
Query: 382 AKVGSRVIELLTQTAYIQSPAD-QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECN 440
+K+G +++ L + A ++ A + + ++ PAF HA E GS+ GVI N
Sbjct: 195 SKIGGILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAY-----EYLRGSR-LGVIRLN 248
Query: 441 PLVLKGLERTA-RHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR 498
P+V + L + + P ++PMLV P W ++ G + + + VMR + +Q+ +K
Sbjct: 249 PVVSERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIYLKE 308
Query: 499 TPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV-DRNDVPLPEKPET 556
K Q+E V+ LD L +T W++N +V V+ R W+ G RL + D P P +P+
Sbjct: 309 ASKHGQMELVYAGLDVLASTPWKINKKVFEVVLRTWNSGERLGKVPPAMYDGPEPVQPQV 368
Query: 557 EDEAQLRKWQWKVRNVKKENRER---HSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
E+ A ++K + + K N+ + HS RC + KL +AR ++E FY+PHN+DFRGR
Sbjct: 369 EELADMKKRSYYLVRQKAYNQAKANNHSDRCSVNYKLEIARAFLNDE-FYFPHNLDFRGR 427
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYP+ +LNH+G DLCRG+L FAE + LG GL WLKIH+ANLY G DK + + R+ +
Sbjct: 428 AYPVPAHLNHIGDDLCRGLLTFAEAKPLGVRGLRWLKIHIANLY--GYDKANFDDRVNWV 485
Query: 674 ENHLDDIFDSADKPLEG---RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQ 730
+ HLD I+ +A + L+ + WWL+A DP+Q LA I L +AL S +PE F S +PVHQ
Sbjct: 486 DEHLDQIYQTATRLLDDPATKAWWLEASDPWQFLAASIELHDALESGNPEAFESSLPVHQ 545
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
DG+CNGLQHYAALG D GA VNL A +KP+DVYS + A V I +D +
Sbjct: 546 DGTCNGLQHYAALGGDVQGARQVNLEASDKPSDVYSHVGAMVEEAIAKDCESGDKY---- 601
Query: 791 LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAK 850
A +L ++ RK+VKQTVMT+VYGVT+IGAR+QI+++LK+R + E E + A+ Y A+
Sbjct: 602 --ALMLKGKITRKVVKQTVMTTVYGVTFIGAREQIEKQLKDR-KDIPEEECWSAAAYLAR 658
Query: 851 VTLTALGEMFQAARGIMSWLGECAKIIA------------------------------SE 880
+ L +G +F+ A+ I +WL A+++A +
Sbjct: 659 LVLGCIGNLFKGAQSIQTWLNLSARLVAKSIPEARIPELMAEAAAAKKGQLPMNRLKKEQ 718
Query: 881 NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHS 938
V WTTPLGLP+VQPYRK+ R + T++Q + + +V +Q +AFPPN++HS
Sbjct: 719 MTSVIWTTPLGLPIVQPYRKIARKQIDTAIQTVYISDPNRLAEVNSAKQASAFPPNYIHS 778
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LD +HMM+TA+ CRK LTFA VHDSYWTHA D+DEM+ +R+ F+ L+ + L
Sbjct: 779 LDATHMMLTALECRKKNLTFASVHDSYWTHAADIDEMSSTIRDTFIALHSSDVLGQLRRE 838
Query: 999 FQKSFPKLVFP 1009
F + + P
Sbjct: 839 FLQRYHDYKIP 849
>gi|334326802|ref|XP_001375862.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Monodelphis domestica]
Length = 1196
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 279/695 (40%), Positives = 405/695 (58%), Gaps = 62/695 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
K W ++G+++IE+L Q+ Y+ + + A P H +S K+
Sbjct: 526 KVWPDVLLVRLGTQLIEILVQSIYMPNSLSP-SQATKRFIPVLYHVYSFLS------IKQ 578
Query: 434 YGVIECNPLVLKGLERTARHMV---IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGA 489
G I+ +P ++ ++ A + + MPML PP+ WT + GA+ P+ +MR G
Sbjct: 579 IGFIKPHPSFIQLVDEAAYTTLTFDVSVMPMLCPPIPWTSPNFGAYVLHPTKLMRCLDGT 638
Query: 490 KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP 549
Q + ++ P+ QL V +AL LGN W+VN VL ++ I++ G + DVP
Sbjct: 639 VQHQQLLESCPQGQLNAVLDALTQLGNCAWKVNQPVLDLVISIFNAKGN-----KKLDVP 693
Query: 550 LP--EKP-----------ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
P E P + ++A+LR+ ++ K RE +S R D KLS+A +
Sbjct: 694 PPVSEAPTPPSYELSKGASSSEKAKLRR---EIAQCHKTAREMYSLRMDALYKLSIAHHL 750
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+D+ F++PHN+DFRGRAYP P+ NHLGSD+ R IL FAEG+ LG +GL WLKIHL NL
Sbjct: 751 RDQ-IFWFPHNMDFRGRAYPCPPHFNHLGSDMTRAILLFAEGKPLGPNGLDWLKIHLINL 809
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
G K S + RLA+ L+DI DSAD PL GR+WW+ ++P+Q LA C+ + A+RS
Sbjct: 810 -TGLKKKESLQARLAYANEILEDILDSADNPLTGRKWWMDVDEPWQALACCMEIANAIRS 868
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P +ISH P+HQDGSCNGLQHYAALG+D +GA +VNL+ + P DVYSG+A V +
Sbjct: 869 PDPTAYISHFPIHQDGSCNGLQHYAALGQDVIGATSVNLMPCDVPQDVYSGVAQLVEELR 928
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
+RDA ++ A++L ++RKLVKQTVMT VYGVT G R QI++RLKE
Sbjct: 929 KRDAAEGKSI------AQVLEGFINRKLVKQTVMTVVYGVTKYGGRLQIEKRLKELDDFP 982
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
+E ++ AS Y +++ ++LGEMF R I WL + A +I+ V+W TPLGLP++Q
Sbjct: 983 KE-HIWEASLYLSQLVFSSLGEMFSTTREIQDWLTKSAHVISKSGSAVQWVTPLGLPIIQ 1041
Query: 897 PYRKLGRHTVKTSLQILTLQRET---EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
PY K + T+ +LQ L L + +K +Q+ AFPPNF+HSLD +HMM+TA++C +
Sbjct: 1042 PYHKTQKMTIPGNLQSLCLSSCSDVNQKPNTLKQKNAFPPNFIHSLDSTHMMLTALSCHR 1101
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD---------------- 997
GLTF VHD +WTHA VD MN + RE+FV L+ PI ++L
Sbjct: 1102 KGLTFVSVHDCFWTHASTVDIMNEVCREQFVNLHSQPILQDLSKFLVTKYCPWSWSHESE 1161
Query: 998 --SFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
S + ++ +P+ G+ DL++V S YFF+
Sbjct: 1162 EMSDNQKLMLMILSDVPKLGNLDLQKVKESTYFFS 1196
>gi|45185910|ref|NP_983626.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|44981700|gb|AAS51450.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|374106832|gb|AEY95741.1| FACR224Cp [Ashbya gossypii FDAG1]
Length = 1295
Score = 511 bits (1315), Expect = e-141, Method: Compositional matrix adjust.
Identities = 291/787 (36%), Positives = 442/787 (56%), Gaps = 73/787 (9%)
Query: 250 ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQ 309
ER + ++ YAPY + + M VIT+ +L+ L TGG R +A IG A+E
Sbjct: 432 ERRPHIRSRLEYAPYITLVNPEKMCVITILELLSLNSTGGVSEGMRTTRAVLAIGKAVEM 491
Query: 310 EVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG 369
E R L+ K + E + E +KL ++ + ++ + +
Sbjct: 492 EYRSEALLKSEKSIFK----------EVRANSNEFKKLVQRAKTTFRNTQIEESKVL--- 538
Query: 370 QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA-DQLADAPPDIF---PAFTHALRTVSK 425
W + +AKVGS +I +L A + D + + ++ PA H
Sbjct: 539 ------WPHNIKAKVGSLLISMLIHVAKVNVKGVDPVTNKT--VYGKAPAICHTF----- 585
Query: 426 ETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYV 483
+ + GSK GV++ + + + +R + + ++PMLV P WT ++ G + F S +
Sbjct: 586 QYRMGSK-VGVLKLHRSLANQMSSDRLSANFQPQHLPMLVKPRPWTSWNSGGYLFTKSTL 644
Query: 484 MRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+R+ + +Q +K T K ++ V++ L+ LG T W VN +L ++ ++W+ G D+
Sbjct: 645 IRSKDSPEQSAYIKAVTGKGVVQNVYKGLNVLGETAWTVNKNMLHIISKVWNSGTEFLDI 704
Query: 543 VDRND-VPLPEKPETEDEAQ-----LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+ D + LP KP ED ++ L++W+ + R + E ++ S RCD KL +AR
Sbjct: 705 PPQQDELLLPAKPRGEDGSEPEPIVLKRWKQECRFLNAEYQKHRSMRCDANYKLEIARAF 764
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
E+ FY+PHN+DFRGRAYP+ P+ NHLG+D+ R +L F EG+ LGK GL WLKIH+ NL
Sbjct: 765 IGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWEGKRLGKEGLRWLKIHMGNL 823
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
Y G+DK + E R+AFTE HL+DI DSA+ PL G+ WW KA+ P+QCLA C+ + A +
Sbjct: 824 Y--GLDKQTFEARVAFTEAHLEDIKDSAENPLNGKGWWKKADKPWQCLATCMEINNAYKL 881
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
S+PE ++SH PVHQDG+CNGLQHYAALG D GA VNLV +KP DVY+ +A V +
Sbjct: 882 SNPEDYVSHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDKPQDVYAFVAKLVTERL 941
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
++ A A L + + RK+VK+TVMT+VYGVT+IGA +QI + L++ P
Sbjct: 942 EK------AALEGDQNAAQLKNLITRKVVKRTVMTNVYGVTFIGATNQIDKELQD-AFPD 994
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------------- 882
++ + Y K ++ E+F AA I WLGE AK I+ +
Sbjct: 995 NSYDM---ARYLTKHVFNSIRELFHAAHLIQDWLGESAKKISKSIRLDLELEKIKKLDNS 1051
Query: 883 ----PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFV 936
V WT+PLGLPVVQPYR + + + T+LQ + + + +RQ FPPNF+
Sbjct: 1052 IMMTSVIWTSPLGLPVVQPYRDIKKKQIHTNLQTVFIADPFAVNPIDPRRQMAGFPPNFI 1111
Query: 937 HSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLL 996
HSLD SHM+++A+ C + GL FA VHDSYWTHA DV +MN+ LR +FV+++++ + + L
Sbjct: 1112 HSLDASHMLLSAIECGRLGLQFAAVHDSYWTHASDVPKMNKALRNEFVKMHQVDLIQRLK 1171
Query: 997 DSFQKSF 1003
+ F +
Sbjct: 1172 NEFDARY 1178
>gi|426200546|gb|EKV50470.1| hypothetical protein AGABI2DRAFT_200200 [Agaricus bisporus var.
bisporus H97]
Length = 967
Score = 511 bits (1315), Expect = e-141, Method: Compositional matrix adjust.
Identities = 290/791 (36%), Positives = 449/791 (56%), Gaps = 74/791 (9%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
+PY + + +++IT+ ++M L + G + +A +G A+E E + + K
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEYKA----QMIK 145
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
K + + + G+ + + ++ ++L AV + ++G++ W Q R
Sbjct: 146 KLDNVADSKSAGGNLYSHAAYKN----------LRDKRL-AVSKEIEGEERSLGWSQVTR 194
Query: 382 AKVGSRVIELLTQTAYIQSPAD-QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECN 440
+K+G +++ L + A ++ A + + ++ PAF HA E GS+ GVI N
Sbjct: 195 SKIGGILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAY-----EYLRGSR-LGVIRLN 248
Query: 441 PLVLKGLERTA-RHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR 498
P+V + L + + P ++PMLV P W ++ G + + + VMR + +Q+ +K
Sbjct: 249 PVVSERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIYLKE 308
Query: 499 TPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV-DRNDVPLPEKPET 556
K Q+E V+ LD L +T W++N +V V+ R W+ G RL + D P P +P+
Sbjct: 309 ASKHGQMELVYAGLDVLASTPWKINKKVFEVVLRTWNSGERLGKVPPAMYDGPEPVQPQV 368
Query: 557 EDEAQLRKWQWKVRNVKKENRER---HSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
E+ A ++K + + K N+ + HS RC + KL +AR ++E FY+PHN+DFRGR
Sbjct: 369 EELADMKKRSYYLVRQKAYNQAKANNHSDRCSVNYKLEIARAFLNDE-FYFPHNLDFRGR 427
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYP+ +LNH+G DLCRG+L FAE + LG GL WLKIH+ANLY G DK + + R+ +
Sbjct: 428 AYPVPAHLNHIGDDLCRGLLTFAEAKPLGVRGLRWLKIHIANLY--GYDKANFDDRVNWV 485
Query: 674 ENHLDDIFDSADKPLEG---RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQ 730
+ HLD I+ +A + L+ + WWL+A DP+Q LA I L +AL S +PE F S +PVHQ
Sbjct: 486 DEHLDQIYQTATRLLDDPATKAWWLEASDPWQFLAASIELHDALESGNPEAFESSLPVHQ 545
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
DG+CNGLQHYAALG D GA VNL A +KP+DVYS + A V I +D +
Sbjct: 546 DGTCNGLQHYAALGGDVQGARQVNLEASDKPSDVYSHVGAMVEEAIAKDCESGDKY---- 601
Query: 791 LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAK 850
A +L ++ RK+VKQTVMT+VYGVT+IGAR+QI+++LK+R + E E + A+ Y A+
Sbjct: 602 --ALMLKGKITRKVVKQTVMTTVYGVTFIGAREQIEKQLKDR-KDIPEEECWSAAAYLAR 658
Query: 851 VTLTALGEMFQAARGIMSWLGECAKIIA------------------------------SE 880
+ L +G +F+ A+ I +WL A+++A +
Sbjct: 659 LVLGCIGNLFKGAQSIQTWLNLSARLVAKSIPEARIPELMAEAAAVKKGQLPMNRLKKEQ 718
Query: 881 NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHS 938
V WTTPLGLP+VQPYRK+ R + T++Q + + +V +Q +AFPPN++HS
Sbjct: 719 MTSVIWTTPLGLPIVQPYRKIARKQIDTAIQTVYISDPNRLAEVNSAKQASAFPPNYIHS 778
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LD +HMM+TA+ CRK LTFA VHDSYWTHA D+DEM+ +R+ F+ L+ + L
Sbjct: 779 LDATHMMLTALECRKKNLTFASVHDSYWTHAADIDEMSSTIRDTFIALHSSDVLGQLRRE 838
Query: 999 FQKSFPKLVFP 1009
F + + P
Sbjct: 839 FLQRYHDYKIP 849
>gi|148235669|ref|NP_001080987.1| polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
gi|6625742|gb|AAF19376.1|AF200705_1 RNA polymerase [Xenopus laevis]
gi|213626594|gb|AAI69686.1| Polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
Length = 1235
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 282/691 (40%), Positives = 408/691 (59%), Gaps = 59/691 (8%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAP-PDIFPAFTHALRTVSKETKGGSKKY 434
W ++G+ +++L+ Q I+ P D L+ P + P H S +K+
Sbjct: 568 WPNTLLVQLGTHLVDLMVQE--IKVPNDLLSSRDDPKLIPVLYHMYSFRS------TKQI 619
Query: 435 GVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGA 489
G+I+ +P + ++ AR + + MPML PPV W GA+ P+ +MR GA
Sbjct: 620 GLIKPHP-IFSQIQLDARESCLTFESSVMPMLCPPVPWMSPRFGAYLLSPAKLMRCMEGA 678
Query: 490 KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP 549
Q + ++++P QL PV ++L+ LG WR+N +L ++ I++ G ++ D+P
Sbjct: 679 VQHQLLLEKSPPGQLYPVLDSLNQLGMCAWRINQTILDIIVSIFNLKGN-----EKLDIP 733
Query: 550 --------LPEKPETEDEAQLRKW-QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+PE+P + ++ + Q ++ +K++ E HS R D KLS+A ++D+
Sbjct: 734 PPISEAPKMPEQPHGDVNSKDKLMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDK- 792
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F++PHN+DFRGR YP PY NHLGSD+ R +L FAEGR LG GL WLKIHL NL G
Sbjct: 793 IFWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKIHLINL-TGL 851
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S + R + + +DDI DSAD PL+G+RWW++A++P+Q LA C+ + +A RS P
Sbjct: 852 KKRNSLKERKEYADAIMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAKASRSPDPT 911
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
+ISH PVHQDGSCNGLQHYAALGRD +GA +VNL+ + P DVYSG+A +V +RDA
Sbjct: 912 KYISHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDTPQDVYSGVAQQVEEFCKRDA 971
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
QR + A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 972 QRGVKI------AQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLREMDNFPKEY- 1024
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + ++L EMF R I WL E A++I+ V W TPLGLP++QPY +
Sbjct: 1025 VWEASHYLVQQVFSSLKEMFSGTREIQLWLTESARMISKSGNTVEWQTPLGLPIIQPYHR 1084
Query: 901 LGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
++LQ++ LQ E+ +Q+ AFPPNF+HSLD +HMM+TA+ C GLT
Sbjct: 1085 AKPVLFHSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLT 1144
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL-------------LDSFQKSFP 1004
F VHD +WTH VD MN++ RE+FV L+ PI +NL +S K P
Sbjct: 1145 FVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCHTLSSNSKAKMSP 1204
Query: 1005 K-----LVFPPLPERGDFDLREVLGSPYFFN 1030
+ L F +PE GDFDLR+V+ S YFF+
Sbjct: 1205 ENLRMVLHFSNVPETGDFDLRQVIDSTYFFS 1235
>gi|224116234|ref|XP_002331994.1| predicted protein [Populus trichocarpa]
gi|222832118|gb|EEE70595.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/392 (65%), Positives = 294/392 (75%), Gaps = 35/392 (8%)
Query: 127 WCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGS 186
+C RGY +VAEA+SSTDVE++VS +E+QEL EM+KEE+ R R R G+GS
Sbjct: 25 FCSRGYVSVAEALSSTDVEDNVSGADEVQELQPEMRKEEEH-----FSRRRLRANPGIGS 79
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 246
K+R+L+ RQVKIE EAWE A EY+ELL DMCE KLAPNLPYMKSLFLGWFEP RDAIA
Sbjct: 80 RKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFRDAIA 139
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
KEQE R K + YA YFD LPAD M+VI MH+L ++MTGG+HG ARVV AAC+IGDA
Sbjct: 140 KEQELIRTGKSRQGYALYFDLLPADKMSVIAMHQLAAMVMTGGQHGCARVVTAACMIGDA 199
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRI 366
IEQE +++ L RKKVTDLIKKQKLPAVR+I
Sbjct: 200 IEQE-KVNPLLS-----------------------------RKKVTDLIKKQKLPAVRKI 229
Query: 367 VKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKE 426
VKG+DD KPW DARAKVGSR+IELL QTAYIQ P DQLAD + PAF H RTVS E
Sbjct: 230 VKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADTSSEPRPAFVHTFRTVSYE 289
Query: 427 TKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT 486
K G+KKYGVI+C+PLVLKGLE+TARHMVIPYMPMLVPP++W GYDKGAH FLPSYVMR
Sbjct: 290 NKKGAKKYGVIQCDPLVLKGLEKTARHMVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRI 349
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
HGAKQQR+ VKR P+KQL+PVFEALDTLGNTK
Sbjct: 350 HGAKQQREAVKRAPRKQLQPVFEALDTLGNTK 381
>gi|67477377|sp|P38671.2|RPOM_NEUCR RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
Length = 1423
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 313/893 (35%), Positives = 465/893 (52%), Gaps = 111/893 (12%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWFEPLRD---AIAKEQE 250
Q K+E + + + +RE + + L +L P + S W + L + E E
Sbjct: 364 QSKLEKDCVDASLARWREENESLQKMGLNTSLDTPSLNSRLYQWQKDLETRLRTMLVEVE 423
Query: 251 RCRMAKHK-------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ M K Y P+ Q + +A +T+ + L GG H + + I
Sbjct: 424 KSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASLITHI 483
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
E+++R+ K K+N K K + S LR K + A
Sbjct: 484 AKFAEEDIRVQKAEALISKRNLRKAKSKQHNPRS--------VLRFKNSTASAGSSDMAD 535
Query: 364 RRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTHA 419
V + D + W R KVG+ ++ L TA I + P + PAF+H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLITQNQ--PAFSHV 593
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERT------ARHMVIPYMPMLVPPVKWTGYDK 473
++ KG KK G I N V++ L R ARH+ PM+ PP W ++K
Sbjct: 594 MQL----RKG--KKIGTIIPNKAVVELLVREPVPDFLARHL-----PMVTPPDPWVSFEK 642
Query: 474 GAHFFLPSYVMR-THGAKQQR-DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
GA+ + V+R +G ++QR T + ++ VF+ LD LG T W++N+ V V+
Sbjct: 643 GAYLETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLD 702
Query: 532 IWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+W+ G ++A++ + D+P PE TED R W +++ ++ E HSQRC +
Sbjct: 703 VWNSGKQVANIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGLHSQRCFMNF 761
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+L +AR +D+ FY+PHNVDFRGRAYP+ PYLNH+G+D RG++ FA+G+ LG+SGL W
Sbjct: 762 QLEIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRW 820
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LK+HLAN+Y G DK S + R F + ++++I DS + PL G +WWL+AEDP+QCLA C
Sbjct: 821 LKVHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCF 878
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL P ++SH+P+HQDG+CNGLQHYAALG DT GA VNLV ++PADVYS +
Sbjct: 879 ELAAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAV 938
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V+ I+ D +D AK + ++ RK+VKQTVMT+VYGVTY+GAR Q+ ++
Sbjct: 939 AKLVIKGIEDDLAKDNEF------AKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQ 992
Query: 829 LKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECAKIIA------- 878
++ + A+ A+ VT A+ MF+ A I +WLGE +
Sbjct: 993 IEAAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQ 1052
Query: 879 ------SENQP-----------------------------------VRWTTPLGLPVVQP 897
SE P + WTTPL +PVVQP
Sbjct: 1053 LDEFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQP 1112
Query: 898 YRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
YRK G TV T +Q ++T+ ++ V ++Q AFPPNF+HSLD SHM+++A+ C + G
Sbjct: 1113 YRKHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELG 1172
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
LTFA VHDS+WTHA D+D MN +LR+ F+ ++ + L FQ + ++
Sbjct: 1173 LTFAAVHDSFWTHASDIDSMNAVLRDAFIRIHSEDVIGRLAAEFQARYKNSLY 1225
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1006 LVFPPLPERGDFDLREVLGSPYFFN 1030
LVFPP+PE+GDFD+R + S YFF+
Sbjct: 1399 LVFPPIPEKGDFDVRSLKDSTYFFS 1423
>gi|359322171|ref|XP_542220.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Canis lupus
familiaris]
Length = 1210
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 287/679 (42%), Positives = 393/679 (57%), Gaps = 42/679 (6%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G R+ ELL +T I P A + P H S +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI--PGSLAAPQGACTLIPVLYHVYSFRS------FR 603
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HG 488
+ G+++ +P + L A H +I +PML PP+ WT GA P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + + P +L +AL LGN WRVN RVL ++ +++ G RL +
Sbjct: 664 TMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPS 723
Query: 547 DVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
+ P P + P AQ + + ++ K RE HS R D +LS+A+ ++ F+
Sbjct: 724 EAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FW 782
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL NL G+ K
Sbjct: 783 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKK 840
Query: 664 LSHE---GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
HE RL F + +DDI DSAD+P+ GR+WW++ ++P+Q LA C+ + A+RS P
Sbjct: 841 --HEPLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPT 898
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
F+SH PVHQDGSCNGLQHYAALGRD++GAA+VNL+ + P DVYSG+AA+V V ++DA
Sbjct: 899 AFVSHFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDA 958
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
QR V A++L + RK+VKQTVMT VYGVT G R QI+RRL+E +E
Sbjct: 959 QRGVRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF- 1011
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF R I WL E A++IA V W TPLG+P++QPY +
Sbjct: 1012 VWEASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHR 1071
Query: 901 LGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ + +Q LT T+K +Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1072 DSKVMIGGGIQSLTFSNSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1131
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN----LLDSFQKSFPKL--VFPPL 1011
F VHD +WTHA DV MN++ RE+FV L+ PI N L++ F S KL +
Sbjct: 1132 FVSVHDCFWTHAADVAVMNQVCREQFVHLHSQPILHNLSRFLVERFCCSSSKLQDTLKAV 1191
Query: 1012 PERGDFDLREVLGSPYFFN 1030
PE G FDL +V S YFF+
Sbjct: 1192 PETGAFDLEQVKHSTYFFS 1210
>gi|164425173|ref|XP_962570.2| hypothetical protein NCU06308 [Neurospora crassa OR74A]
gi|157070818|gb|EAA33334.2| predicted protein [Neurospora crassa OR74A]
Length = 1443
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 313/893 (35%), Positives = 465/893 (52%), Gaps = 111/893 (12%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWFEPLRD---AIAKEQE 250
Q K+E + + + +RE + + L +L P + S W + L + E E
Sbjct: 364 QSKLEKDCVDASLARWREENESLQKMGLNTSLDTPSLNSRLYQWQKDLETRLRTMLVEVE 423
Query: 251 RCRMAKHK-------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ M K Y P+ Q + +A +T+ + L GG H + + I
Sbjct: 424 KSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASLITHI 483
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
E+++R+ K K+N K K + S LR K + A
Sbjct: 484 AKFAEEDIRVQKAEALISKRNLRKAKSKQHNPRS--------VLRFKNSTASAGSSDMAD 535
Query: 364 RRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTHA 419
V + D + W R KVG+ ++ L TA I + P + PAF+H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLITQNQ--PAFSHV 593
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERT------ARHMVIPYMPMLVPPVKWTGYDK 473
++ KG KK G I N V++ L R ARH+ PM+ PP W ++K
Sbjct: 594 MQL----RKG--KKIGTIIPNKAVVELLVREPVPDFLARHL-----PMVTPPDPWVSFEK 642
Query: 474 GAHFFLPSYVMR-THGAKQQR-DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
GA+ + V+R +G ++QR T + ++ VF+ LD LG T W++N+ V V+
Sbjct: 643 GAYLETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLD 702
Query: 532 IWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+W+ G ++A++ + D+P PE TED R W +++ ++ E HSQRC +
Sbjct: 703 VWNSGKQVANIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGLHSQRCFMNF 761
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+L +AR +D+ FY+PHNVDFRGRAYP+ PYLNH+G+D RG++ FA+G+ LG+SGL W
Sbjct: 762 QLEIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRW 820
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LK+HLAN+Y G DK S + R F + ++++I DS + PL G +WWL+AEDP+QCLA C
Sbjct: 821 LKVHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCF 878
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL P ++SH+P+HQDG+CNGLQHYAALG DT GA VNLV ++PADVYS +
Sbjct: 879 ELAAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAV 938
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V+ I+ D +D AK + ++ RK+VKQTVMT+VYGVTY+GAR Q+ ++
Sbjct: 939 AKLVIKGIEDDLAKDNEF------AKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQ 992
Query: 829 LKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECAKIIA------- 878
++ + A+ A+ VT A+ MF+ A I +WLGE +
Sbjct: 993 IEAAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQ 1052
Query: 879 ------SENQP-----------------------------------VRWTTPLGLPVVQP 897
SE P + WTTPL +PVVQP
Sbjct: 1053 LDEFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQP 1112
Query: 898 YRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
YRK G TV T +Q ++T+ ++ V ++Q AFPPNF+HSLD SHM+++A+ C + G
Sbjct: 1113 YRKHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELG 1172
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
LTFA VHDS+WTHA D+D MN +LR+ F+ ++ + L FQ + ++
Sbjct: 1173 LTFAAVHDSFWTHASDIDSMNAVLRDAFIRIHSEDVIGRLAAEFQARYKNSLY 1225
>gi|366991923|ref|XP_003675727.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
gi|342301592|emb|CCC69362.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
Length = 1326
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 293/774 (37%), Positives = 433/774 (55%), Gaps = 65/774 (8%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
APY + + M VI + +L+ L TGG R +A +G AIE E R + L+
Sbjct: 475 APYLLLVNPEKMCVIAILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQLLKS-- 532
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
E E N + E +KL ++ + ++ + + W Q R
Sbjct: 533 --------ESNIFKEVNKKSPEFKKLVQRARQSFRSNQVEQSKIV---------WPQAIR 575
Query: 382 AKVGSRVIELLTQTAYIQSPADQLADAPPDIF---PAFTHALRTVSKETKGGSKKYGVIE 438
AK+GS +I L A + +++ PAF+H + KG K GVI+
Sbjct: 576 AKIGSTLISTLIHVAKVDVKGFDPV-TKQEVYGKAPAFSHGYQYC----KGS--KLGVIK 628
Query: 439 CNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTV 496
+ ++ L ER + +PMLV P W + G +F+ S ++R+ + +Q +
Sbjct: 629 IHRSLINQLNGERLIASVQPQLLPMLVKPRPWRNWRSGGYFYSQSTLIRSKESPEQLAYL 688
Query: 497 KRTPKKQLEP-VFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL--VDRNDVPLPEK 553
K + P V+ L+ LG T W +N +V V+ ++W+ G ++ + + LP
Sbjct: 689 KAVSDADVIPDVYTGLNALGETAWTINKKVFDVISQVWNTGDEFLEIPEIQHDMNLLPPP 748
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
P D ++ RKW+ + + + + + S RCD KL +AR E+ FY+PHN+DFRGR
Sbjct: 749 PRDSDPSEFRKWKLQNKELANKISKNRSVRCDTNYKLEIARAFLGEK-FYFPHNLDFRGR 807
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYP+ P+ NHLG+DL RG+L F +G+ LG GL WLKIHL+NLY G+DK + R+ F
Sbjct: 808 AYPLSPHFNHLGNDLSRGLLIFWKGKKLGPHGLVWLKIHLSNLY--GMDKAPFDERVRFV 865
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
E+HL +I +SA+ PL +WW A+ P+QCLA CI LTEAL+ +PE FISH PVHQDG+
Sbjct: 866 EDHLQEIKESAENPLTTGKWWKDADKPWQCLATCIELTEALKLDNPEEFISHQPVHQDGT 925
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALG D GA VNL+ ++P DVY+ +A V +++ A + A +A
Sbjct: 926 CNGLQHYAALGGDVEGAEQVNLIPHDRPQDVYAHVARLVTKRLEKAALQGDA------KA 979
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
K+L+ ++ RK+VKQ VMT+VYGVTY+GA QI+++L + P + E F S Y
Sbjct: 980 KILVDKISRKVVKQPVMTNVYGVTYVGATFQIEKQL-SKFFP-DRKECFDLSKYLTSHVF 1037
Query: 854 TALGEMFQAARGIMSWLGECA-------------KIIASENQP-----VRWTTPLGLPVV 895
+ E+F +A I WLGECA K + ++P V WTTPLGLP+V
Sbjct: 1038 ATIRELFHSAHLIQDWLGECANRITKSIRLDVDGKAFKNGDKPDFMSSVIWTTPLGLPIV 1097
Query: 896 QPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
QPYR+ + V T+LQ + + V +RQ+ FPPNF+HSLD SHM+++A+ CR
Sbjct: 1098 QPYREASKKQVMTNLQTVFISDPFAVNGVNARRQKAGFPPNFIHSLDASHMLLSAIQCRA 1157
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
GL FA VHDSYWTHACD+D+M+ LRE+F++L+++ + E L + F + + V
Sbjct: 1158 NGLEFASVHDSYWTHACDIDKMSVYLREQFIDLHKVDLIERLKNEFDERYKNYV 1211
>gi|363748672|ref|XP_003644554.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae DBVPG#7215]
gi|356888186|gb|AET37737.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae DBVPG#7215]
Length = 1298
Score = 508 bits (1307), Expect = e-140, Method: Compositional matrix adjust.
Identities = 303/855 (35%), Positives = 461/855 (53%), Gaps = 85/855 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E + + A +R + E K L KSL W+ + + +E +R
Sbjct: 368 RQRDLENRSVDAAKERWRH---EFEEAKTRGGLNIKKSLNVKLWEWYNGMYPLVREEVKR 424
Query: 252 CR----------------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRAR 295
C+ K ++ YAPY L + M+VIT+ +L+ L TGG R
Sbjct: 425 CKELVNLIDTKKPVQHSPKDKARMEYAPYLTLLNPEKMSVITILELLSLNSTGGVSEGMR 484
Query: 296 VVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLI 355
+A IG A+E E R L+ E++ + + + E +KL +
Sbjct: 485 TARAVMAIGKAVEMEFRSEALLKS----------ENQMFKDVSKKSPEFKKLLQMAKTTF 534
Query: 356 KKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SPADQLA-DAPPDIF 413
+ K+ + W RAK+GS +I +L A ++ + D + +A
Sbjct: 535 RNTKIEQSKVF---------WPYQIRAKIGSLLISMLINVARVEVTGIDPVTKEAVYGEA 585
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGY 471
PA H + + GSK GV++ + + L ER + ++PMLV P WT +
Sbjct: 586 PAICHTF-----QYRTGSK-IGVLKLHRSLTYQLGGERLNASVQPQHLPMLVKPRPWTSW 639
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
+ G +++ S ++R+ + +Q +K T K + +++ L+ LG+T W VN + ++L
Sbjct: 640 NSGGYYYSQSTLIRSKDSPEQLAYIKAVTGKGAVNNIYQGLNVLGDTAWTVNKPLFTILS 699
Query: 531 RIWSCGGRLADLV-DRNDVPLPEKPETE-DEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+IW+ G D+ +D LP KP E D +L++W+ R E R + RCD
Sbjct: 700 KIWNSGEEYLDIPPQEDDCQLPPKPPRESDPLELKRWRNDCRFKNIEYRGNRAMRCDSNY 759
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
KL +AR E+ FY+PHN+DFRGRAYP+ P+ NHLG+D+ R +L F +G+ LG+ GL+W
Sbjct: 760 KLEIARAFLGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRALLIFWQGKKLGEDGLNW 818
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LK+HLANLY G+DK E R+ FTE HL+DI DSA+ PL G WW KA+ P+QCLA C+
Sbjct: 819 LKVHLANLY--GMDKKPFEDRIKFTEEHLEDIKDSAENPLHGNGWWKKADKPWQCLATCM 876
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L +A + +PE FISH PVHQDG+CNGLQHYAALG D GA VNLV ++P DVY+ +
Sbjct: 877 ELRDAYKLENPEDFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFV 936
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V + + A +A+ L ++RK+VK+TVMT+VYGVT++GA QI +
Sbjct: 937 AKLVTERLTKAAAAGDE------KAEQLKDMINRKVVKRTVMTNVYGVTFVGASQQIDKE 990
Query: 829 LKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ------ 882
L+E A ++ E + + Y + ++ E+F AA I WL E AK I+ +
Sbjct: 991 LRE--AFPDKNESYDMARYLTRHVFASIRELFHAAHLIQDWLAESAKKISKSVRLDLEIE 1048
Query: 883 ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQR 928
V WT+PLGLPVVQPYR + + + T+LQ + + + ++Q
Sbjct: 1049 KGKKLDSSLMMTSVIWTSPLGLPVVQPYRDIKKRQITTNLQTVFIADPFAVNPIDPRKQM 1108
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
PPNF+HSLD SHM+++A+ C GL FA VHDSYW+HACD+ MN+ LR +F++++E
Sbjct: 1109 AGLPPNFIHSLDASHMLLSAIECGSQGLQFAAVHDSYWSHACDISLMNKTLRNQFIKMHE 1168
Query: 989 MPIFENLLDSFQKSF 1003
+ + + L + F + +
Sbjct: 1169 VDLIQRLKNEFDERY 1183
>gi|406868664|gb|EKD21701.1| DNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1461
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 322/892 (36%), Positives = 462/892 (51%), Gaps = 102/892 (11%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGW--- 237
+ + M + Q ++E A E A + +R+ + + + L +L KSL W
Sbjct: 347 LSTASEEMKREVQQRLEKNAVESAIDRWRDESIHLSKMGLNTSL-QTKSLGARMWKWQTV 405
Query: 238 FEP-LRDAIAKEQERCRMAKHKV------------AYAPYFDQLPADMMAVITMHKLMGL 284
FE L+D IAK + KV Y P+ LP D +A +T+ M
Sbjct: 406 FEQYLKDEIAKVDAAENITAEKVNKKMLPEDLDRVIYGPFLRLLPPDKLAAVTILSAMTT 465
Query: 285 LMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQ 344
+ + G + A I ++E E ++K KKN N + D +
Sbjct: 466 MSSMGLDKGIPLSNAIMAIAKSVEDECAFDT-IQKASKKNIWPNSNNRP-DIGQLKRATR 523
Query: 345 EKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD- 403
+ K + DL + + A+ + + W RAKVG+ ++ L + A +
Sbjct: 524 FRTSKPLIDLDQSETAEAL--------EDRQWPLAMRAKVGAFLMSALIEVAKVPVALTH 575
Query: 404 -QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH-MVIPYMPM 461
+ + + PAF HA + K G KK GVI N ++ L+R H ++ ++PM
Sbjct: 576 PETGEIVTQMQPAFCHA-----HQYKLG-KKVGVIMANKSLVATLKREPVHSLLAKHLPM 629
Query: 462 LVPPVKWTGYDKGAHFFLPSYVMRTH-GAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKW 519
LV P W+ + KG PS +MR G K QR + + + F+ L+ LG T W
Sbjct: 630 LVEPEPWSDFSKGGFLAHPSKIMRVKTGDKDQRYYAEAAIGQGDMTLTFKGLNVLGKTSW 689
Query: 520 RVNNRVLSVLDRIWSCGGRLADLV-DRNDVPLPEKPE-TEDEAQLRKWQWKVRNVKKENR 577
R+N +V V+ W+ G +A++ + ++ P +PE ++D + R+W V+NV+
Sbjct: 690 RINQQVFDVMLEAWNAGDAIANIPPETPNLKAPPEPEASQDPLERRQWIRAVKNVENHRS 749
Query: 578 ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE 637
HSQRC +L +AR +K EE FY+PHNVDFRGRAYP+ PYLNH+G+D CRG+L F +
Sbjct: 750 GLHSQRCFQNFQLEIARALKHEE-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLLIFGK 808
Query: 638 GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
GR LG+SGL WLKIH AN++ G DK S R AF H+D +F++A PL G RWWL A
Sbjct: 809 GRELGESGLRWLKIHAANVF--GFDKASLSEREAFAMKHMDQMFEAAKNPLGGTRWWLNA 866
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA 757
EDP+Q LA C+ L A+ S P F+SH+PVHQDG+CNGLQHYAALG DT GA VNL
Sbjct: 867 EDPWQFLAACMELKNAMESPDPTRFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEP 926
Query: 758 REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVT 817
++PADVY+ +A V I D +AK+L +V RK+VKQTVMT+VYGVT
Sbjct: 927 ADRPADVYTAVADLVKESIAEDLANGNQ------KAKILEGKVTRKVVKQTVMTNVYGVT 980
Query: 818 YIGARDQIKRRLKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECA 874
YIGA+ Q++R+L + E+ + AA V +AL MF+ A I WLGECA
Sbjct: 981 YIGAKAQVRRQLVAAFPGLPNNEVINPNSLAAYVATKIFSALSTMFKGAHDIQFWLGECA 1040
Query: 875 KIIAS---------------------------------------------ENQPVRWTTP 889
I++ V WTTP
Sbjct: 1041 SRISTCLTAEQLTRLDSEWPRLVSEKAGKGPVTKTTGARYTPATLESLTQFKSSVIWTTP 1100
Query: 890 LGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
L +PVVQPYR + T++Q + L ++ V ++Q FPPNF+HSLD +HM+++
Sbjct: 1101 LHMPVVQPYRSSKSRIIVTNMQKINLSEPHRSDPVNKRKQLQGFPPNFIHSLDATHMLLS 1160
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
A+ C K GL+FA VHDS+WTHA DVD+MN LRE F++++ + L D F
Sbjct: 1161 ALECDKHGLSFAAVHDSFWTHASDVDKMNTALRECFIKIHSEDVVGRLRDEF 1212
>gi|336471080|gb|EGO59241.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2508]
gi|350292162|gb|EGZ73357.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2509]
Length = 1416
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 313/893 (35%), Positives = 463/893 (51%), Gaps = 111/893 (12%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWFEPLRD---AIAKEQE 250
Q K+E + + + +RE + + L +L P + S W + L + E E
Sbjct: 360 QSKLEKDCVDASLARWREENESLQKMGLNTSLDTPSLNSRLYQWQKDLETRLRTMLVEVE 419
Query: 251 RCRMAKHK-------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ M K Y P+ Q + +A +T+ + L GG H + + I
Sbjct: 420 KSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASLITHI 479
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
E+++R+ K K N K K + S LR K + A
Sbjct: 480 AKFAEEDIRVQKAEALISKHNLRKAKSKQHNPRS--------VLRFKNSTASAGSSDMAD 531
Query: 364 RRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTHA 419
V + D + W R KVG+ ++ L TA I + P + PAF+H
Sbjct: 532 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLITQNQ--PAFSHV 589
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERT------ARHMVIPYMPMLVPPVKWTGYDK 473
++ KG KK G I N V++ L R ARH+ PM+ PP W ++K
Sbjct: 590 MQL----RKG--KKIGTIIPNKAVVELLVREPVPDFLARHL-----PMVTPPDPWVSFEK 638
Query: 474 GAHFFLPSYVMR-THGAKQQR-DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
GA+ + V+R +G ++QR T + ++ VF+ LD LG T W++N+ V V+
Sbjct: 639 GAYLETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLD 698
Query: 532 IWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+W+ G ++A++ + D+P PE TED R W +++ ++ E HSQRC +
Sbjct: 699 VWNSGKKVANIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGLHSQRCFMNF 757
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+L +AR +D+ FY+PHNVDFRGRAYP+ PYLNH+G+D RG++ FA+G+ LG+SGL W
Sbjct: 758 QLEIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRW 816
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LK+HLAN+Y G DK S + R F + ++++I DS PL G +WWL+AEDP+QCLA C
Sbjct: 817 LKVHLANVY--GFDKASLQERQDFADENIENIRDSVINPLNGNQWWLQAEDPWQCLATCF 874
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL P ++SH+P+HQDG+CNGLQHYAALG DT GA VNLV ++PADVYS +
Sbjct: 875 ELAAALELEDPTQYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAV 934
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V+ I+ D +D AK + ++ RK+VKQTVMT+VYGVTY+GA+ Q+ ++
Sbjct: 935 AKLVIKGIEDDLAKDNEF------AKAMHGKITRKVVKQTVMTNVYGVTYVGAKKQVLKQ 988
Query: 829 LKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECAKIIA------- 878
++ + A+ A+ VT A+ MF+ A I +WLGE +
Sbjct: 989 IEAAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQ 1048
Query: 879 ------SENQP-----------------------------------VRWTTPLGLPVVQP 897
SE P + WTTPL +PVVQP
Sbjct: 1049 LDEFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQP 1108
Query: 898 YRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
YRK G TV T +Q ++T+ ++ V ++Q AFPPNF+HSLD SHM+++A+ C + G
Sbjct: 1109 YRKHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELG 1168
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
LTFA VHDS+WTHA DVD MN +LR+ F+ ++ + L FQ + ++
Sbjct: 1169 LTFAAVHDSFWTHASDVDSMNAVLRDAFIRIHSEDVIGRLAAEFQARYKNSLY 1221
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1006 LVFPPLPERGDFDLREVLGSPYFFN 1030
LVFPP+PE+GDFD+R + S YFF+
Sbjct: 1392 LVFPPIPEKGDFDVRSLKDSTYFFS 1416
>gi|392587510|gb|EIW76844.1| DNA/RNA polymerase [Coniophora puteana RWD-64-598 SS2]
Length = 1215
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 292/799 (36%), Positives = 436/799 (54%), Gaps = 79/799 (9%)
Query: 262 APYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTK 321
P+ + + ++++ + ++M L +GG + +A +G A+E E + E K
Sbjct: 319 GPFLSLIKPEKLSLLVILEVMRLSGSGGVLDGMKTARALLTVGRAVENEYKA----EMCK 374
Query: 322 KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
K N + + N + K ++ +L A + + + ++ W Q R
Sbjct: 375 KNNIAVPQHTRFSGDVNFFSGNGYKA-------LQAGRLAAAKYLEENEEWTSDWTQQLR 427
Query: 382 AKVGSRVIELLTQTAYIQSPA--DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
++G +++ L A I+ A + + + PAF HA V +K GVI
Sbjct: 428 VRIGGILVDCLMDVATIERQAVDKRTGEKISEQQPAFYHAYEYVR------GQKLGVIRI 481
Query: 440 NPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 497
NP V + L + + ++PMLV P W ++G + + S MR + +Q+ ++
Sbjct: 482 NPFVAEHLAKDGMQGTLHPRHLPMLVQPKPWVNAEQGGYIYSKSSAMRYKDSIEQQKYLQ 541
Query: 498 RTPK-KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKP- 554
E V+ LD LG+T W+VN +V ++ ++W+ G RL + DVP PE+P
Sbjct: 542 HASALGNCELVYAGLDVLGSTPWKVNEKVFDIVLQVWNSGERLGKMPPAVFDVPEPERPA 601
Query: 555 --ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRG 612
ET+ +A+ Q ++R + HS RC + K+ VAR + Y PHN+DFRG
Sbjct: 602 NVETDVKAKTVYGQ-RMRAWTNDKANAHSDRCSVNYKIEVARAFLGDT-MYLPHNLDFRG 659
Query: 613 RAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAF 672
RAYP+ P+LNHLG DL RG+L FA+G+ LG GL WLKIH+ANLY G DK + + R F
Sbjct: 660 RAYPIPPHLNHLGDDLSRGLLRFAKGKPLGVRGLRWLKIHIANLY--GFDKANFDEREEF 717
Query: 673 TENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDG 732
+L++I+DSA+ PL G+RWW+KA+DP+QCL CI L AL + P ++SH+PVHQDG
Sbjct: 718 AMKYLEEIYDSAENPLTGKRWWMKADDPWQCLGACIELKAALDAPEPTAYVSHLPVHQDG 777
Query: 733 SCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR 792
+CNGLQHYAALG D GAA VNL ++P+DVY+ +A V + D +
Sbjct: 778 TCNGLQHYAALGGDQQGAAQVNLAVTDRPSDVYTHVAKMVERRLAEDCVKGEK------H 831
Query: 793 AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVT 852
A+LLL ++ RK+VKQTVMT+VYGVT++GARDQI+R+L +R EEA A+ Y A +T
Sbjct: 832 AELLLGKITRKVVKQTVMTTVYGVTFVGARDQIERQLSDRKDIPEEACWA-AAAYLAHIT 890
Query: 853 LTALGEMFQAARGIMSWLGECAKIIA---------------------------------- 878
L +G++F A+ I +WL CA++I+
Sbjct: 891 LNCIGDLFSGAKAIQNWLNLCARLISKSIPAERVASALEAPKARKGKGAKALAEGGNGGA 950
Query: 879 ------SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTA 930
+ V WTTPLGLP+VQPYRK + + TSLQ + + +V +Q +A
Sbjct: 951 NNRIKNEQMTSVVWTTPLGLPIVQPYRKDKKKQIITSLQTVFISDPNTPAEVNTMKQASA 1010
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD +HMM+TA+ CRK +TFA VHDSYWTHA +D+M+ I+R FV+L+
Sbjct: 1011 FPPNFIHSLDATHMMLTALECRKQDITFASVHDSYWTHAASIDDMSAIIRSTFVDLHSSD 1070
Query: 991 IFENLLDSFQKSFPKLVFP 1009
I L F++ + P
Sbjct: 1071 ILGRLRSEFEERYATHKIP 1089
>gi|301620987|ref|XP_002939816.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Xenopus
(Silurana) tropicalis]
Length = 1242
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 279/691 (40%), Positives = 406/691 (58%), Gaps = 59/691 (8%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAP-PDIFPAFTHALRTVSKETKGGSKKY 434
W ++G+ +++L+ Q I+ P D L+ P + P H S +K+
Sbjct: 575 WPNSLLVQLGTHLVDLMVQE--IKVPNDLLSSRDDPKLIPVLYHMYSFRS------TKQI 626
Query: 435 GVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGA 489
G+I+ +P + ++ A + + MPML PPV W GA+ P+ +MR GA
Sbjct: 627 GLIKPHP-IFSQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGA 685
Query: 490 KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP 549
Q + ++++P QL PV ++L+ LG WR+N +L ++ I++ G ++ D+P
Sbjct: 686 VQHQLLLEKSPPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKGN-----EKLDIP 740
Query: 550 --------LPEKPETEDEAQLRKW-QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
LPE+P + ++ + Q ++ +K++ E HS R D KLS+A ++D+
Sbjct: 741 PPLSEAPKLPEQPHGDLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDK- 799
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F++PHN+DFRGR YP PY NHLGSD+ R +L FAEGR LG GL WLK HL NL G
Sbjct: 800 IFWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINL-TGL 858
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S + R + ++ +DDI DSAD PL+G+RWW++A++P+Q LA C+ + A RS P
Sbjct: 859 KKRNSLQERKEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIANASRSPDPT 918
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
+ISH PVHQDGSCNGLQHYAALGRD +GA +VNL+ + P DVYSG+A +V +RDA
Sbjct: 919 KYISHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDIPQDVYSGVAQQVEEFRKRDA 978
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
QR + A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 979 QRGVKI------AQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEY- 1031
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + ++L EMF R I WL E A++I+ V W TPLGLP++QPY +
Sbjct: 1032 VWEASHYLVQQVFSSLKEMFSGTREIQLWLTESARMISKSGNTVEWQTPLGLPIIQPYHR 1091
Query: 901 LGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+++LQ++ LQ E+ +Q+ AFPPNF+HSLD +HMM+TA+ C GLT
Sbjct: 1092 TKPVLFQSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLT 1151
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL-------------LDSFQKSFP 1004
F VHD +WTH VD MN++ RE+FV L+ PI +NL D K P
Sbjct: 1152 FVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCQTLSSDKMAKMSP 1211
Query: 1005 K-----LVFPPLPERGDFDLREVLGSPYFFN 1030
+ L F +PE G+FDL++V+ S YFF+
Sbjct: 1212 ENLRMTLHFSNVPETGNFDLKQVIDSTYFFS 1242
>gi|255953185|ref|XP_002567345.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589056|emb|CAP95178.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1353
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 325/886 (36%), Positives = 465/886 (52%), Gaps = 101/886 (11%)
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCE-QKLAPNL----PYMKSLFLGWFEPL 241
GK + ++RQ ++E ++ + A +RE D E QK N+ + + W L
Sbjct: 330 GKQLISELRQKRLEADSLDSALWRWRE---DNTERQKSGLNVGSDEKKLNKIMSQWHTDL 386
Query: 242 RDAIAKEQERCRMA----------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH 291
I +E E + K + Y + L D +A +T+ +M G
Sbjct: 387 VTRIKRELELVKETLAGRIISTEQKERCEYGVFLQALDPDRLAALTLLSVMSCFSRQGMD 446
Query: 292 GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL-RKK 350
++ A I+G ++ E+ +L+K K + ++ K +E T+ ++K R +
Sbjct: 447 KGLKLSAIASIVGKELQDEIIADTYLKKNKSVDPSRLKALKE-----TLANRKDKQGRLR 501
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA----YIQSPADQLA 406
L++K + +D+ WG ++ KVG ++ +L + A + + P +
Sbjct: 502 WRSLVEK---------MNAEDESIIWGSRSQVKVGGVLMSMLVEVAKAPVWTEDPVTKKR 552
Query: 407 DAPPDIFPAFTHALRTVSKETKGG----SKKYGVIECNPLVLKGLERTARHMVIPYMPML 462
++ PAF H+ + + G SK ++ P E ARH+ PM+
Sbjct: 553 TL--NMQPAFDHSYQIHFGKRSGHIHMHSKIVDIVAKEPPA----EVLARHL-----PMV 601
Query: 463 VPPVKWTGYDKGAHFFLPSYVMRTH-GAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWR 520
P WTG G + S ++RT G Q +K K L+ + LD LG T WR
Sbjct: 602 CKPKPWTGPRSGGYKIYESSLVRTTPGELLQPAYLKAVLKDDGLKEIRAGLDVLGGTGWR 661
Query: 521 VNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPETE-DEAQLRKWQWKVRNVKKENRE 578
+N +V V+ W+ G + L N D+ PEKP + D A R+W KVR +
Sbjct: 662 INQQVFEVMLEAWNDGKAVGKLAPLNPDLQAPEKPSPDADYAIQREWNRKVRETENLRSG 721
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
HS RC +L VAR + +E FY PHN+DFRGRAYP+ PYLN +G+D RG+L F +G
Sbjct: 722 FHSVRCFQNFQLEVARAFR-KETFYLPHNMDFRGRAYPLPPYLNQMGADNSRGLLLFDKG 780
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAE 698
+ LG SG+ WLKI +ANL+ G DK S R FT +HLDD+ DSA+ L GRRWWL+AE
Sbjct: 781 KALGPSGMRWLKIQIANLF--GFDKASMSEREQFTMDHLDDVLDSANTGLRGRRWWLQAE 838
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
DP+Q LA C L AL+ S P ++SH+P+HQDGSCNGLQHYAALG D +GA VNL
Sbjct: 839 DPWQLLAACCELRNALQLSEPTEYVSHLPIHQDGSCNGLQHYAALGGDRVGAQQVNLEPS 898
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
++P+DVY+G+ V I +DA + AKLL +V+RK+VKQTVMT+VYGVT+
Sbjct: 899 DRPSDVYTGVCEFVKEEIAQDAANGNDL------AKLLDGRVNRKIVKQTVMTNVYGVTF 952
Query: 819 IGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
+GA Q+KR+L + + E AS Y + ALG MF A I WLG+CA+ I
Sbjct: 953 LGATRQVKRQLIDYLPDLSGPERNSASFYISTKIFGALGSMFNGAHEIQYWLGDCAQRIT 1012
Query: 879 SENQP----------------------------------VRWTTPLGLPVVQPYRKLGRH 904
P V WTTPLGLPVVQPYR
Sbjct: 1013 QSVTPEQIEELTQAALVPKDERDEDYSTSIDPEKSFRSTVIWTTPLGLPVVQPYRTRKSR 1072
Query: 905 TVKTSLQILTL-QRETEKVMVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
V+TSLQ ++L ++ V+ KR Q AFPPNF+HSLD +HM+M+A AC++AGLTF+ VH
Sbjct: 1073 RVQTSLQDISLVDPSSDDVVSKRKQLQAFPPNFIHSLDATHMIMSANACQEAGLTFSAVH 1132
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
DS+WTHA D+D+MN ILRE FV ++ + L F+ + K +F
Sbjct: 1133 DSFWTHAADIDQMNLILREAFVRMHSDDVVGRLGAEFKVRYGKNMF 1178
>gi|367044972|ref|XP_003652866.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
gi|347000128|gb|AEO66530.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
Length = 1408
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 313/888 (35%), Positives = 463/888 (52%), Gaps = 98/888 (11%)
Query: 196 QVKIETEAWEKAANEYR---ELLMDM-CEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
Q K+E + + A N +R E LM M +LA P + S W L IA EQ +
Sbjct: 363 QAKLERDCIDAAINRWRSENEALMSMGLNTQLA--TPSLNSRLYDWHRALEARIAAEQAK 420
Query: 252 CRMAKH----------KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAAC 301
++ + Y P+ Q PA +A +T+ + +L G V
Sbjct: 421 VDKSESAPKKSQEDLDRCLYGPHLLQAPAKRLAAVTILSALSILAMHGADKGIPVSNMVQ 480
Query: 302 IIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKK-QKL 360
+ E+++R + L K+ K K + + + + K+ + ++ + +
Sbjct: 481 QVAKIAEEDIR-SQILAKSLPYARLKLKHRRQQNARQLIRQRERKIEEPPSNEPETGART 539
Query: 361 PAVRRIVKGQDDFKP------WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI-- 412
+V + K + P W RAK G+ ++ L +A I + PD
Sbjct: 540 LSVNAVSKEIGESPPDRLEARWPTVIRAKFGAVLLGALIDSAKIVVNREH-----PDTKQ 594
Query: 413 -----FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP-YMPMLVPPV 466
PAF H + + K G +K GVI+ N ++ ++R R + ++PM+V PV
Sbjct: 595 MVTQSMPAFIHTV-----QLKKG-RKVGVIQPNRALVDLMKREPRGEALARHLPMVVEPV 648
Query: 467 KWTGYDKGAHFFLPSYVMR--THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNR 524
W+ +DKG PS ++R H +Q+ + +E + LD LG T WR+N
Sbjct: 649 PWSRFDKGGFIGSPSPLIRLKNHEKEQRFYAEAAIERGDMEQMMRGLDVLGKTAWRINRP 708
Query: 525 VLSVLDRIWSCGGRLADLVDRN-DVPLPEKPE-TEDEAQLRKWQWKVRNVKKENRERHSQ 582
V V+ W+ G A+ + +P+P +P+ T+D + R W V+ + E HS
Sbjct: 709 VFDVMLEAWNSGEEFANFPALDPKIPIPPEPDSTDDPMKRRLWVRAVKAAENEKSGLHSV 768
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
RC I +L +AR +D+ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L FA+G+ LG
Sbjct: 769 RCFINFQLEIARAFRDQT-FYFPHNLDFRGRAYPLPTYLNHMGADHMRGLLIFAKGKPLG 827
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
K+GL WLK+HL+N+Y G DK S + R F +L++IFDSAD PL G+RWWL AEDP+Q
Sbjct: 828 KNGLRWLKVHLSNVY--GFDKASLQEREDFANQNLENIFDSADNPLTGKRWWLGAEDPWQ 885
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
CLA C L AL S P F+SH PVHQDG+CNGLQHYAALG DT GA VNL+ ++PA
Sbjct: 886 CLAACFELKAALSSPDPAAFVSHFPVHQDGTCNGLQHYAALGGDTWGAQQVNLLPGDRPA 945
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
DVY+ +A ++Q +D A + AK + +++RK+VKQTVMT+VYGVT++GA+
Sbjct: 946 DVYAAVAE----LVQEQVAKDVAAGNNF--AKAVDGKINRKVVKQTVMTNVYGVTFVGAK 999
Query: 823 DQIKRRLKERGAPMEEAELFGAS---CYAAKVTLTALGEMFQAARGIMSWLGE-----CA 874
Q++++L +E+ ++ Y A AL MF+ A I +WLGE C
Sbjct: 1000 KQVQKQLDALYPDIEKETGISSAILGSYIASKVFVALSTMFRGAHDIQNWLGEIGGRVCR 1059
Query: 875 KII---------ASENQPVR-----------------------WTTPLGLPVVQPYRKLG 902
+ +S + VR WTTPL +PVVQPYRK G
Sbjct: 1060 AVTPEQLDRLAESSGEKVVRRKTVKTERSTEDELASQFRNTLVWTTPLRMPVVQPYRKSG 1119
Query: 903 RHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG 960
+ T LQ ILT + V ++Q AFPPNF+HSLD SHMM++A+ C GLTFA
Sbjct: 1120 TRLISTCLQDLILTSTERDDPVNRRKQLQAFPPNFIHSLDASHMMLSALECNDMGLTFAA 1179
Query: 961 VHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
VHDS+WTHA DVD MN ++R+ F+ ++ + L F+ + ++
Sbjct: 1180 VHDSFWTHAADVDAMNTVIRDSFIRIHREDVIGRLKAEFEARYRGCIY 1227
>gi|402903464|ref|XP_003914585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Papio anubis]
Length = 1226
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 281/691 (40%), Positives = 404/691 (58%), Gaps = 56/691 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G ++ E+L Q + S D + P H + R V
Sbjct: 558 QPWPLPVQMELGKQLAEMLVQATRMPSSLDS-QHGSSRLVPVLYHVYSFRNV-------- 608
Query: 432 KKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT- 486
++ G+++ +P ++ LE TA + + +PML PP+ WT GA P+ +MRT
Sbjct: 609 QQIGILKPHPAYVQLLE-TAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTV 667
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVD 544
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 668 EGATQHQELLETCPPAALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPKLGVPAP 727
Query: 545 RNDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
++ P LP+ +A+LR+ ++ +K RE HS R + +LS+A+ ++
Sbjct: 728 ASEAPQPAEAHLPQSAAPARKAELRR---ELARCQKMAREMHSLRAEARYRLSLAQHLRG 784
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL+WLKIHL NL
Sbjct: 785 RV-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLNWLKIHLVNL-T 842
Query: 659 GGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSS 718
G + RLAF E +DDI DSAD+P+ GR+WW+ AE+P+Q LA C+ + A+RSS
Sbjct: 843 GSKKREPLRKRLAFAEEVMDDILDSADQPMTGRKWWMGAEEPWQTLACCMEVANAVRSSD 902
Query: 719 PETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQR 778
P ++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++
Sbjct: 903 PAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQ 962
Query: 779 DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE 838
DA+R V A++L + RK+VKQTVMT VYGVT+ G R QI++RL+E +E
Sbjct: 963 DAERGTQV------AQMLEGFITRKVVKQTVMTVVYGVTHYGGRLQIEKRLRELTDFPQE 1016
Query: 839 AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPY 898
++ AS Y + L EMF R I WL E A++I+ V W TPLG+P++QPY
Sbjct: 1017 F-VWEASHYLVRQVFKTLQEMFAGTRAIQHWLTESARLISHMGSVVEWVTPLGIPIIQPY 1075
Query: 899 RK-LGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
R+ + V+ +Q +T ++K ++Q+ FPPNF+HSLD SHMM+TA+ C +
Sbjct: 1076 RQEVKVKQVRGGIQSITYTHSGDLSQKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRK 1135
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL---------------LDSF 999
GLTF VHD YWTHA DV MN++ RE+FV L+ PI E+L S+
Sbjct: 1136 GLTFVSVHDCYWTHAADVAVMNQVCREQFVRLHSEPILEDLSRFLVSRFCPKPRKISQSW 1195
Query: 1000 QKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ S + +P+ G FDL V S YFF+
Sbjct: 1196 EASQLQQTLQAVPKPGAFDLERVKHSTYFFS 1226
>gi|67901244|ref|XP_680878.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|40742605|gb|EAA61795.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|259483938|tpe|CBF79737.1| TPA: Putative DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q70TF3] [Aspergillus
nidulans FGSC A4]
Length = 1391
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 300/805 (37%), Positives = 427/805 (53%), Gaps = 82/805 (10%)
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHK 315
+ +V Y PY + + +A +T+ + L G ++ A IG+ + +EV + +
Sbjct: 423 RERVDYGPYLRMVKPEELASLTILTTINNLTRNGLDKGIKLAPLAVAIGNDVYEEVALQR 482
Query: 316 FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
+E+ KK+ + ++ +Q L +K D +K + ++ ++
Sbjct: 483 MVERRKKEMNSAHR---------VKLIKQIFLGRKDRDKLKGINWKNALKSMEQEEPDIV 533
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD-------IFPAFTHALRTVSKETK 428
W +AKVG+ ++ LL A + P ++ A A + P F H+ +
Sbjct: 534 WATAIKAKVGAVLMSLLYDVAKVPVPVNEAAAAKKIKRRDEVVMQPVFQHSYQIT----- 588
Query: 429 GGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPS-YVMRT 486
++ G I NP ++K L R A ++ +PML P W GY GA+F+ + +V T
Sbjct: 589 -WGRRTGYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYFYHQNLFVRST 647
Query: 487 HGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
G Q VK + L+ + + LD LG T W +N V +V+ W+ G +ADL
Sbjct: 648 PGESLQPTYVKAALENDGLKMIRKGLDILGGTGWVINRDVFNVMLEAWNTGEPIADLAPL 707
Query: 546 NDVPLPE-KPETEDEAQLRK-WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
+ KP E+ + K W KVR+++ + HSQRC ++ VAR +E FY
Sbjct: 708 DPDLPIPPKPSPEEGYEAEKEWHTKVRDIENQRGGYHSQRCFQNFQMEVARSYLNET-FY 766
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
PHN+DFRGRAYP+ PYLN + +D RG+L F+E + LG+SGL WLKI +ANL G DK
Sbjct: 767 LPHNMDFRGRAYPIPPYLNQMAADNARGLLLFSEAKPLGESGLRWLKIQIANL--AGFDK 824
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
S R F +HLDD+ DSA+ L GRRWWL+AEDP+QCLA C L AL+ +P +
Sbjct: 825 ASLSEREQFAMDHLDDVLDSANNGLHGRRWWLQAEDPWQCLAACCELRNALQHPNPTEYA 884
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL-VIIQRDAQR 782
S +P+HQDGSCNGLQHYAALG D LGA VNL ++P+DVYS +A V + AQ
Sbjct: 885 SRLPIHQDGSCNGLQHYAALGGDKLGAQQVNLEPSDRPSDVYSAVAQYVKEAVATEAAQG 944
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP AK+L ++ RK+VKQTVMT+VYGVT+IGA QI+++L + + E
Sbjct: 945 DPI-------AKMLEGKITRKVVKQTVMTNVYGVTFIGAMKQIRKQLANHYPELSDHEKK 997
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP------------------- 883
+ Y A+ ALG MF+ AR I WLG+ A I P
Sbjct: 998 TGAIYIARKVFQALGTMFEGARDIQHWLGDSANRITQSLPPEQIEDLAKEVLNPSFSTLP 1057
Query: 884 -----------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE 920
V WTTPLGLPVVQPYR V TS Q L++ +
Sbjct: 1058 LTSRGKSKKSLSSSDPSAHFKTTVIWTTPLGLPVVQPYRNRLPRRVVTSFQSLSVVEQDS 1117
Query: 921 KVMVKR--QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
+ V R Q AFPPNF+HSLD +HMM++A+AC +AGLTF+ VHDS+WTH DVD MNRI
Sbjct: 1118 RYCVTRRKQLQAFPPNFIHSLDATHMMLSAIACHQAGLTFSAVHDSFWTHPSDVDSMNRI 1177
Query: 979 LREKFVELYEMPIFENLLDSFQKSF 1003
LRE FV+++ + + L F+ +
Sbjct: 1178 LREAFVQMHSDDVIKRLAAEFEVRY 1202
>gi|325094325|gb|EGC47635.1| DNA-directed RNA polymerase [Ajellomyces capsulatus H88]
Length = 1397
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 311/872 (35%), Positives = 455/872 (52%), Gaps = 91/872 (10%)
Query: 193 KMRQVKIETEAWEKAANEYR---ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI---- 245
+MRQ ++E++ E A ++ E+L + + P+ P M + W L I
Sbjct: 364 QMRQRRLESDCVESAIARWKKESEMLHRVGVNPI-PSKP-MGAFLYDWHTQLMSRINEEL 421
Query: 246 ---AKEQERCRMA---KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
+ +++ RM+ +V +PY + D +A +T+ L G ++
Sbjct: 422 ERIEESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGLKLTGL 481
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+G A+ E + E KK TK ++ +KL K T +K +
Sbjct: 482 VMYVGKAVYDEYLAMQLRELEKKSKPTKK-----------ISALIDKLVHKGT---RKAQ 527
Query: 360 LPAVRRIVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPA-DQLADAPPDIFPAF 416
+ R I + + +P W +AK+G+ + +L TA + P D + A
Sbjct: 528 VQWRRIIARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKDPKTNQQKQTDQA- 586
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGA 475
A R V + +G + G + N +++ L R ++ ++PM+ PP WT G
Sbjct: 587 --AFRRVYQLERGF--RVGYVHANDYIVEKLRREPLGELLAKHLPMVCPPRPWTSARGGG 642
Query: 476 HFFLPSYVMRT-HGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
PS VMR G Q V+ + L+ VF L LG T W++N VL+V+ W
Sbjct: 643 FLEYPSTVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAW 702
Query: 534 SCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
+ G +A+L N ++ PEKP+T+D L+ + + HSQRC +L +
Sbjct: 703 NSGEEIANLAPENPNIIEPEKPDTDDRDILKDYYRARMHATNARTGYHSQRCFQNFQLEI 762
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR ++E FY PHN+DFRGRAYPM PY N +G+D CRG+L F++GR LG SGL WLKIH
Sbjct: 763 ARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIH 821
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LAN++ G DK S + R F +HL+DI DSA L+G+RWWL A DPFQCLA CI LT
Sbjct: 822 LANVF--GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTN 879
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
A+ P ++SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+G+A V
Sbjct: 880 AMALEDPTKYVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHV 939
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
IQ+DA + AKLL ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 940 KQSIQKDAAKGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVDH 993
Query: 833 GAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE----------- 880
+ + + G + Y A+ ALG MF A I WLG+CA I+
Sbjct: 994 YPDLLHSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSSEQIEALSD 1053
Query: 881 ---------------------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
V WTTPL LPV QPYR V + LQ L
Sbjct: 1054 ERNLKVVGRFQGAKKLAKNIKDPKSHFKSTVVWTTPLKLPVAQPYRDAACVKVFSDLQQL 1113
Query: 914 TLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACD 971
+++ + ++ V ++Q AFPPNFVHSLD +HM ++AV C + GL+F+ VHDS+WTHA D
Sbjct: 1114 SIRNPQASDVVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAVHDSFWTHAAD 1173
Query: 972 VDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
VD MNR+LR+ FV ++ I + L F+ +
Sbjct: 1174 VDTMNRVLRDAFVRMHSEDIIQRLASEFKTRY 1205
>gi|425767195|gb|EKV05770.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425769079|gb|EKV07586.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1288
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 315/883 (35%), Positives = 469/883 (53%), Gaps = 95/883 (10%)
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCE-QKLAPNLPY----MKSLFLGWFEPL 241
GK + +RQ ++ET++ + A +RE D E QK N+ + + W L
Sbjct: 243 GKQLLADLRQQRLETDSLDSALWRWRE---DNAERQKFGLNVASDEKRLNGIMSQWHTDL 299
Query: 242 RDAIAKEQERCRMA----------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH 291
I KE + A K + Y + L D +A +T+ +M G
Sbjct: 300 VARIKKELVLVKEALAARIVSLEQKERCEYGVFLQALDPDRLAALTLLSVMSTFSRQGMD 359
Query: 292 GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL-RKK 350
++ A ++G ++ E+ FL++ K + ++ K ++ T+ ++K R +
Sbjct: 360 KGIKLSILASVVGKELQDELIADTFLKRNKSMDSSRLKALKQ-----TLANRKDKQGRLR 414
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA----YIQSPADQLA 406
L++K + +++ WG ++ K+G+ ++ +L + + + + PA +
Sbjct: 415 WRSLVEK---------INAENESILWGSRSQVKIGAVLMSMLVEVSKAPVWTEDPATK-- 463
Query: 407 DAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA-RHMVIPYMPMLVPP 465
+ PAF H+ + K+ G I N +++ + R ++ ++PM+ P
Sbjct: 464 KRILTMQPAFDHSYQI------NFGKRSGHIHMNSKLVEIVAREPPAELLARHLPMVCKP 517
Query: 466 VKWTGYDKGAHFFLPSYVMRTH-GAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNN 523
WTG G + S ++RT G Q +K K L+ + LD LG T W++N
Sbjct: 518 RPWTGPRSGGYKVYESNLVRTTPGELLQPAYLKAVLKDDGLKEIRAGLDVLGATGWKINQ 577
Query: 524 RVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPETE-DEAQLRKWQWKVRNVKKENRERHS 581
+V V+ W+ GG + L N D+ +PE+P + D A ++W KVR ++ HS
Sbjct: 578 QVFDVMLEAWNDGGAVGKLAPLNPDLQVPEQPSPDADYATQKQWHHKVREIENLRSGFHS 637
Query: 582 QRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL 641
RC +L VAR + +E FY PHN+DFRGRAYP+ PY+N +G+D RG+L F +G+ L
Sbjct: 638 VRCFQNFQLEVARAFR-KEVFYLPHNMDFRGRAYPLPPYMNQMGADNSRGLLLFDKGKAL 696
Query: 642 GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPF 701
G+SG+ WLKI +ANL+ G DK S R FT NHLDD+ DSA+ L GRRWWL+AEDP+
Sbjct: 697 GESGMRWLKIQIANLF--GFDKASMSEREQFTMNHLDDVLDSANAGLHGRRWWLQAEDPW 754
Query: 702 QCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKP 761
Q LA C L AL+ S P ++SH+P+HQDGSCNGLQHYAALG D +GA VNL ++P
Sbjct: 755 QLLAACCELRNALQLSKPTEYVSHLPIHQDGSCNGLQHYAALGGDRVGAQQVNLEPSDRP 814
Query: 762 ADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGA 821
+DVY+G+ V I +DA + A+ L +V RK+VKQTVMT+VYGVT++GA
Sbjct: 815 SDVYTGVCEFVKEAIAQDAANGDRL------AQRLDGRVTRKIVKQTVMTNVYGVTFLGA 868
Query: 822 RDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
Q+KR+L + + E A+ Y A ALG MF A I WLG+CA+ I
Sbjct: 869 TRQVKRQLIDYLPDLSNTERNKAAFYIATKIFGALGSMFNGAHEIQYWLGDCAQRITQSV 928
Query: 882 QP----------------------------------VRWTTPLGLPVVQPYRKLGRHTVK 907
P V WTTPLGLPVVQPYR V+
Sbjct: 929 TPEQIEELTQAALVPKDERDDNFATSTDPEKSFRSTVIWTTPLGLPVVQPYRTRKTRRVQ 988
Query: 908 TSLQILTL-QRETEKVMVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
TSLQ ++L ++ V+ KR Q AFPPNF+HSLD +HM+M+A AC +AGLTF+ VHDS+
Sbjct: 989 TSLQDISLVDPGSDDVVSKRKQLQAFPPNFIHSLDATHMIMSANACHEAGLTFSAVHDSF 1048
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
WTHA D+D+MN ILR+ FV ++ + L F+ + K +F
Sbjct: 1049 WTHAADIDQMNLILRDAFVRMHSDDVVGRLGAEFKVRYGKNMF 1091
>gi|261193289|ref|XP_002623050.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239588655|gb|EEQ71298.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239614020|gb|EEQ91007.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
ER-3]
Length = 1382
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 311/871 (35%), Positives = 451/871 (51%), Gaps = 89/871 (10%)
Query: 193 KMRQVKIETEAWEKAANEYR---ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI---- 245
+MRQ ++E++ + A +R E+L + + P+ P M +L W L I
Sbjct: 364 QMRQRRLESDCVDSAIARWRKESEMLQKVGVNPI-PSKP-MGALLYDWHTQLMSRINEEL 421
Query: 246 ---AKEQERCRMA---KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
+ +++ RM +V +PY + D +A +T+ L G ++
Sbjct: 422 ELIEESEKKSRMLPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTAL 481
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+G AI E + E KK + + +KL K T KK +
Sbjct: 482 VMYLGKAIYDEYLAMQLRELEKKSKSPRR-----------TSALIDKLVHKGT---KKAQ 527
Query: 360 LPAVRRIVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFT 417
+ R I + ++ +P W +AK+G+ + +L TA + P +
Sbjct: 528 VQWQRIIARFEESQRPVDWSPVVQAKIGACLASMLLSTATV--PVSTKDPSTNRTQRTDQ 585
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAH 476
A R V + +G + G + N +++ L R ++ ++PM+ PP WT +G
Sbjct: 586 AAFRRVYQLERGF--RVGYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGF 643
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTP--KKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
PS VMR + + T + L+ VF L LG T W++N VL V+ W+
Sbjct: 644 LEYPSAVMRVKAGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWN 703
Query: 535 CGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVA 593
G +A+L N ++ PEKPET+D L+ + + HSQRC +L +A
Sbjct: 704 SGEEIANLAPENPNIIEPEKPETDDRDILKDYYRAKIHAANTRTGYHSQRCFQNFQLEIA 763
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHL 653
R ++E FY PHN+DFRGRAYPM PY N +G+D CRG+L F++GR LG SGL WLKIHL
Sbjct: 764 RAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHL 822
Query: 654 ANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA 713
AN++ G DK S + R F +HL+DI DSA L+G++WWL A DPFQCLA CI LT A
Sbjct: 823 ANVF--GYDKASFQEREQFAMDHLEDIRDSAINGLKGKKWWLDAGDPFQCLAACIELTNA 880
Query: 714 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL 773
+ P F+SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+G+A V
Sbjct: 881 MALEDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVK 940
Query: 774 VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
IQ+DA AKLL ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 941 QSIQKDAANGDQT------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVDHY 994
Query: 834 APMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP--------- 883
+ + + G + Y A+ ALG MF A I WLG+CA I+ P
Sbjct: 995 PDLFHSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSPEQIEALADE 1054
Query: 884 -----------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILT 914
V WTTPL LPV QPYR V + LQ L+
Sbjct: 1055 QNLKVVGRFQGAKKMAKNIKDPKYHFKSTVVWTTPLKLPVAQPYRDAASIKVYSDLQQLS 1114
Query: 915 LQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
++ + ++ V ++Q AFPPNFVHSLD +HM ++AV C + GL+F+ VHDS+WTHA DV
Sbjct: 1115 IRNPQASDIVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAVHDSFWTHAADV 1174
Query: 973 DEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
D MNR+LR+ FV ++ I E L F+ +
Sbjct: 1175 DIMNRVLRDAFVLMHSEDIVERLASEFKTRY 1205
>gi|389743216|gb|EIM84401.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 1355
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 318/899 (35%), Positives = 482/899 (53%), Gaps = 98/899 (10%)
Query: 178 RRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGW 237
RRV + + ++L+ + E + A + +L ++ + +L N ++ W
Sbjct: 298 RRVLPDDVTARQKLLEESVYDVAVERLRRQAELFEQL--NLTDGQL--NQSDLQHWMWNW 353
Query: 238 FEPLRD-------AIAKEQERCRMAKHKVAYA-------PYFDQLPADMMAVITMHKLMG 283
+ LR+ A+ E++R YA P+ L + +++I + ++M
Sbjct: 354 HKRLRERLTRDITAVLAEEDRVPTGARPKGYADAFSRLGPFLSLLKPEKLSLIVILEVMR 413
Query: 284 LLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTE 343
L +GG G + +A +G A+E H++ + KKN+ + TV T
Sbjct: 414 LQSSGGISGGMKTTRALLSVGMAVE-----HEYKAEMCKKNKI---------QMPTVGTR 459
Query: 344 QEK--LRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSP 401
+ K + + +++ A R + G++ W Q R KVGS +++ L + A ++
Sbjct: 460 ETSGFFSKFSYNDLHARRVTARRYMEDGEEWTSQWTQPVRIKVGSFLVDRLMECAMVERT 519
Query: 402 ADQLADAPPDIF----PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA-RHMVI 456
A + P +I PAF H+ + K GV++ N +V + L R R +
Sbjct: 520 APDPKN-PGNILREEQPAFFHSYEYIR------GNKLGVLKLNQVVQEKLGRDGVRETLH 572
Query: 457 P-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK-KQLEPVFEALDTL 514
P ++PMLV P W Y+ G + + S VMR +K+Q +K +E V+ LD L
Sbjct: 573 PRHLPMLVKPKPWLNYNDGGYIYNKSLVMRFKESKEQETYLKHASGVGNVELVYAGLDVL 632
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRK--WQWKVRN 571
G+T W++N V V+ +W+ G L + + P PE+P + Q + + ++R
Sbjct: 633 GSTPWKINRGVFDVVLEVWNSGKGLCKVPSAAFEEPEPERPANMEVDQNGRTIYLTRLRA 692
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+ HS RC + K+ +AR + FY PHN+DFRGRAYP+ P+LNH+G+DL RG
Sbjct: 693 WTQAKANHHSDRCSVNYKIEIARAFIGDT-FYLPHNLDFRGRAYPLPPHLNHIGNDLSRG 751
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
+L F E + LG GL WLKIHLANLY G DK + + R+ F LD+I+DSAD PL GR
Sbjct: 752 LLLFGESKPLGARGLRWLKIHLANLY--GYDKATFDERVEFVHERLDEIYDSADNPLTGR 809
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
RWW++A+DP+QCLA C L AL S PE + +PVHQDG+CNGLQHYAALG D GA
Sbjct: 810 RWWIQADDPWQCLATCKELKAALTSPEPEAYECSLPVHQDGTCNGLQHYAALGGDAAGAR 869
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL ++P+DVY+ +A V +++ D V A++L +V RK+VKQTVMT
Sbjct: 870 QVNLDVADRPSDVYTYVANMVEDLLKAD------VVAGNRFAQMLSGRVARKVVKQTVMT 923
Query: 812 SVYGVTYIGARDQIKRRLKERG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT+IGAR+QI+++LK+ P E+A + A+ Y AK + A+G++F A+ IM+WL
Sbjct: 924 TVYGVTFIGAREQIEKQLKDSPYVPKEDA--YMAAAYLAKKVMLAIGDLFSGAQSIMNWL 981
Query: 871 GECAKIIA---------SENQP------------------------VRWTTPLGLPVVQP 897
A++IA + QP V WTTPLGLP+VQP
Sbjct: 982 TLSARLIAKSVPEDRLNAAMQPYEPKFKSKKNAAVATRLQKEQMTSVVWTTPLGLPIVQP 1041
Query: 898 YRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
YRK+ R + TSLQ + + V +Q TAFPPNF+HSLD +HM++TA+ CR G
Sbjct: 1042 YRKIKRKQIMTSLQTVFISDPNVPASVDSNKQATAFPPNFIHSLDATHMLLTALECRTQG 1101
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPER 1014
L FA VHDSYWTH CD+D+M+ I+R+ F+ L+ + L F++ + P + R
Sbjct: 1102 LAFASVHDSYWTHPCDIDQMSGIIRDTFIALHSSDVLARLDTEFRERYKGYKVPVISLR 1160
>gi|448517808|ref|XP_003867858.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380352197|emb|CCG22421.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis]
Length = 1291
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 315/899 (35%), Positives = 475/899 (52%), Gaps = 98/899 (10%)
Query: 151 VEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYR-MLKM----RQVKIETEAWE 205
+EEI L E+ K+E R+G+ +R+ KY L+ RQ +IE E
Sbjct: 319 IEEIVADLDEVTKQEVRDGKLNYHDIYKRLQTDEQREKYNEALETFNLDRQREIEIRGIE 378
Query: 206 KAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQERCR--------- 253
A +++ D E + + KS+ W++ L I KE + C+
Sbjct: 379 GAKEKWKH---DFEEAQKRGDFNLNKSMNAQCYDWYQKLIPLIEKEHKMCKALLRDDEPV 435
Query: 254 ------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
K + YAP+ ++ A+ AVIT+ +L+ L +G +G R V+A +G AI
Sbjct: 436 AQDDTTTTKDRAFYAPFLTKVGAEKAAVITILELLKLNASGSNNGGMRAVKAITSVGRAI 495
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
E E R T N D+E S + +KV + +K+ VR +
Sbjct: 496 EMEYR-------------TSNLADQEYKMS---------VSRKVAGSSQMKKI--VRNSI 531
Query: 368 KGQDDFKP-WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKE 426
Q++ P W R++VG ++ L A ++ D PAF H+++ V
Sbjct: 532 DSQEEADPEWDHATRSRVGGVLVSFLMAIAKVKVRRQTPKGTIEDYHPAFFHSMQFV--- 588
Query: 427 TKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVM 484
G +++GVI+ + + K L T+ I +PMLV P W + G + + ++
Sbjct: 589 ---GGQRFGVIKIHNEISKNLSGTSFMETIQPQSLPMLVKPKPWDSFYGGIGLYSKNALV 645
Query: 485 RTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL- 542
R A + VK K+ L+ VF+ L+ LG T W +N +V V+ W+ G +
Sbjct: 646 RMKDAPETEAYVKAAAKRGNLQEVFDGLNVLGTTAWTINKKVFDVISHYWNKGDEFLTIP 705
Query: 543 --VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
++ P P+ + + + ++ V++ + R SQRCD KL +AR E+
Sbjct: 706 PVLESAQFPPKLSPDADPSERYDHTKATIKAVREFSSSR-SQRCDYNYKLEIARGFIGEK 764
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
Y+PHN+DFRGRAYP+ P+LNHLG DL R + F EG+ LG+ GL WLK+ LAN+Y G
Sbjct: 765 -LYFPHNLDFRGRAYPISPHLNHLGGDLTRSLFLFWEGKELGERGLEWLKVQLANVY--G 821
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
VDK R+ F +H+++ SA+ PLE +WW KAE P+Q L+VC L EA + P
Sbjct: 822 VDKAPISERIQFATDHIEEAIKSAEDPLE-YKWWTKAEKPWQALSVCFELAEAYKLPDPT 880
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
F+S++PVHQDG+CNGLQHYAALG D GA VNL ++P DVY+ ++ V + DA
Sbjct: 881 KFVSYLPVHQDGTCNGLQHYAALGGDIEGANQVNLNPSDRPQDVYTFVSKLVQNRVNADA 940
Query: 781 QR--DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE 838
++ D A+F ++ RK+VKQTVMT+VYGVT++GA QIK+++ + ++
Sbjct: 941 EKGHDIAIF--------FKDKIKRKVVKQTVMTNVYGVTFVGALAQIKKQVAQHFGEDQD 992
Query: 839 AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA------------SENQ---- 882
A ++ + Y K ++ E+F+ A I WLGE AK I+ SE++
Sbjct: 993 AHIY--TKYLTKQVFASIRELFENAHLIQDWLGEAAKRISKSVSVDYGDVSNSESELHSS 1050
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLD 940
V WTTPLGLP VQPYR H+VKTS+Q +++ T + ++Q+ FPPNF+HSLD
Sbjct: 1051 AVIWTTPLGLPCVQPYRVNKHHSVKTSVQDVLISNPSGTSTIDSRKQQAGFPPNFIHSLD 1110
Query: 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
+HM+MTA +C ++ L FA VHDS+WTHA +VD MN ILRE+FV L+ + + L D F
Sbjct: 1111 ATHMLMTATSCGESDLQFASVHDSFWTHAANVDTMNSILREQFVRLHTQNLVQILRDEF 1169
>gi|327353367|gb|EGE82224.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1393
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 311/871 (35%), Positives = 451/871 (51%), Gaps = 89/871 (10%)
Query: 193 KMRQVKIETEAWEKAANEYR---ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI---- 245
+MRQ ++E++ + A +R E+L + + P+ P M +L W L I
Sbjct: 364 QMRQRRLESDCVDSAIARWRKESEMLQKVGVNPI-PSKP-MGALLYDWHTQLMSRINEEL 421
Query: 246 ---AKEQERCRMA---KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
+ +++ RM +V +PY + D +A +T+ L G ++
Sbjct: 422 ELIEESEKKSRMLPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTAL 481
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+G AI E + E KK + + +KL K T KK +
Sbjct: 482 VMYLGKAIYDEYLAMQLRELEKKSKSPRR-----------TSALIDKLVHKGT---KKAQ 527
Query: 360 LPAVRRIVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFT 417
+ R I + ++ +P W +AK+G+ + +L TA + P +
Sbjct: 528 VQWQRIIARFEESQRPVDWSPVVQAKIGACLASMLLSTATV--PVSTKDPSTNRTQRTDQ 585
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAH 476
A R V + +G + G + N +++ L R ++ ++PM+ PP WT +G
Sbjct: 586 AAFRRVYQLERGF--RVGYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGF 643
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTP--KKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
PS VMR + + T + L+ VF L LG T W++N VL V+ W+
Sbjct: 644 LEYPSAVMRVKAGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWN 703
Query: 535 CGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVA 593
G +A+L N ++ PEKPET+D L+ + + HSQRC +L +A
Sbjct: 704 SGEEIANLAPENPNIIEPEKPETDDRDILKDYYRAKIHAANTRTGYHSQRCFQNFQLEIA 763
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHL 653
R ++E FY PHN+DFRGRAYPM PY N +G+D CRG+L F++GR LG SGL WLKIHL
Sbjct: 764 RAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHL 822
Query: 654 ANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA 713
AN++ G DK S + R F +HL+DI DSA L+G++WWL A DPFQCLA CI LT A
Sbjct: 823 ANVF--GYDKASFQEREQFAMDHLEDIRDSAINGLKGKKWWLDAGDPFQCLAACIELTNA 880
Query: 714 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL 773
+ P F+SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+G+A V
Sbjct: 881 MALEDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVK 940
Query: 774 VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
IQ+DA AKLL ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 941 QSIQKDAANGDQT------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVDHY 994
Query: 834 APMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP--------- 883
+ + + G + Y A+ ALG MF A I WLG+CA I+ P
Sbjct: 995 PDLFHSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSPEQIEALADE 1054
Query: 884 -----------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILT 914
V WTTPL LPV QPYR V + LQ L+
Sbjct: 1055 QNLKVVGRFQGAKKMAKNIKDPKYHFKSTVVWTTPLKLPVAQPYRDAASIKVYSDLQQLS 1114
Query: 915 LQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
++ + ++ V ++Q AFPPNFVHSLD +HM ++AV C + GL+F+ VHDS+WTHA DV
Sbjct: 1115 IRNPQASDIVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAVHDSFWTHAADV 1174
Query: 973 DEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
D MNR+LR+ FV ++ I E L F+ +
Sbjct: 1175 DIMNRVLRDAFVLMHSEDIVERLASEFKTRY 1205
>gi|150865988|ref|XP_001385433.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
gi|149387244|gb|ABN67404.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
Length = 1251
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 309/889 (34%), Positives = 464/889 (52%), Gaps = 100/889 (11%)
Query: 161 MKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCE 220
+K EEQRE N SG + RQ ++E + A +++ +M +
Sbjct: 301 LKTEEQREKFN--------------SGLHSFNLTRQRRLEVRGADGAKEKWKHEFEEMQK 346
Query: 221 QKLAPNLPYMKSLFLGWFEPLRDAIAKEQERC------------------RMAKHKVAYA 262
+ P + + W++ L + KE E C ++ K + YA
Sbjct: 347 RGALPLNKGLNAQLFQWYKNLLPYVKKEAEMCQKLMDGKVSKTDLSPDEKKLYKDREYYA 406
Query: 263 PYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKK 322
PY +P + M VIT+ +L+ L TGG R +A +G A+E E + L+
Sbjct: 407 PYMVLVPPEKMCVITILELLKLNSTGGIVDGMRAARALISVGKAVELEYKSQSLLK---- 462
Query: 323 KNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR--IVKGQDDFKPWGQDA 380
+E + KKV + +++ + ++ I++ DD W
Sbjct: 463 -------------------SEIKAFSKKVKSTNQWKRILSNKKNNIIENPDDSTDWSYTV 503
Query: 381 RAKVGSRVIELLTQTAYIQSPADQ--LADAPPDIFPAFTHALRTVSKETKGGSKKYGVIE 438
AK+G+ + LL A + A PAF H + ++ +K GVI+
Sbjct: 504 YAKLGAVLTNLLLFVAKVPVKAHNPTTGKTITGSQPAFFHTYQFLN------GQKLGVIK 557
Query: 439 CNPLVLKGLE-RTARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTV 496
+ ++K L R+ + V P +PMLV P +W Y+ G + + S ++R + + +
Sbjct: 558 LHKEIIKQLAGRSLSNAVQPQLLPMLVAPREWHSYNDGGYLYSRSTLVRIKDSAETTAYL 617
Query: 497 KRTPK-KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP-LPEK- 553
++ L V++ L+ LG T W VN RV ++ R W+ G D+ + P LPE
Sbjct: 618 RKAADLGNLNEVYDGLNVLGKTPWTVNRRVFEIITRYWNSGEEFLDIPPIMEEPNLPEPL 677
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
P + AQ ++Q K+R+ E SQRCD KL +AR E+ F+ PHNVDFRGR
Sbjct: 678 PVDAEPAQKFEYQRKLRSALNEAASLRSQRCDTNYKLEIARGFLGEKVFF-PHNVDFRGR 736
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYP+ P+ NHLG+DL R + F EGR LG+ GL WLKIHLAN+Y GVDK R+ F
Sbjct: 737 AYPISPHFNHLGNDLTRSLFLFWEGRELGERGLEWLKIHLANVY--GVDKAPLNERVQFV 794
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
++L+++F+SA P + WW KAE P+Q L VC L EA + +P ++SHIP+HQDG+
Sbjct: 795 NDNLENVFESARNPYDTDAWWKKAEKPWQALGVCFELEEAYKLENPTQYVSHIPIHQDGT 854
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALG D GA VNL+ ++P DVY +A+ V I +A+ A
Sbjct: 855 CNGLQHYAALGGDIEGARQVNLLPADRPQDVYKYVASLVQKRIDAEAEEGNKY------A 908
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
L ++ RK+VKQTVMT+VYGVT++GA QIK+++ + + E+ + Y
Sbjct: 909 VFLQDKITRKVVKQTVMTNVYGVTFVGATAQIKKQIDQYFSGEEDVADYAR--YLTMHVF 966
Query: 854 TALGEMFQAARGIMSWLGECAKII------------ASENQP-----VRWTTPLGLPVVQ 896
++ E+F+ A I WLG+ AK + +++ +P V WTTPLGLP VQ
Sbjct: 967 NSIRELFEGAHLIQDWLGDAAKRVSKSVRIDYEDAKSNDGKPNHLSSVIWTTPLGLPCVQ 1026
Query: 897 PYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
PYR +KT+LQ +++ +V ++Q+ AFPPNFVHSLD +HM+MTA AC A
Sbjct: 1027 PYRISKNQLIKTNLQDISISDPFSASQVDARKQQAAFPPNFVHSLDATHMLMTAKACGDA 1086
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
L+FA VHDSYWTHA DVD MN+ +R +FV+L+ + + L + F+K +
Sbjct: 1087 RLSFASVHDSYWTHAADVDHMNKEIRNQFVKLHSSNLVQELKEEFEKRY 1135
>gi|296806639|ref|XP_002844119.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
gi|238845421|gb|EEQ35083.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
Length = 1375
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 293/852 (34%), Positives = 453/852 (53%), Gaps = 80/852 (9%)
Query: 193 KMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERC 252
++RQ ++E ++ A +R+ + Q+ + + W++ + I +E E
Sbjct: 366 RLRQEQLEKDSLTSAIERWRKESEGVIGQRRQVE-ARLNAFMYQWYQGVLGKIKEELELA 424
Query: 253 RMAKHK----------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
+ ++ K Y P+ + +A +T+ ++G + + G ++
Sbjct: 425 KRSESKKKLTPEESERYEYIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTH 484
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
IG A++ E I + + ET+N E L K +
Sbjct: 485 IGRAVKDEYIIETTRQSAVNEAETEN--------------EAYYLNKTFRQMKVYNSTGK 530
Query: 363 VRRIVKGQDDFKP---WGQDARAKVGSRVIELLTQTAYI-QSPADQLADAPPDIF-PAFT 417
R ++ + +P W K+G+ + +L TA I S D + + + PAF
Sbjct: 531 FRSYMQKHTEGRPPVHWPTSTEIKIGALLSSMLFSTAEIPTSHKDPVTEEVRYVNEPAFQ 590
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAH 476
H V + KG G ++ + V++ L + + +++ ++PM+ PP W +G
Sbjct: 591 H----VYQLQKG--HNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSPPRPWVSNTQGGF 644
Query: 477 FFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
P V+RT H Q + + + LE +++ L LG T W++N V V+ W+
Sbjct: 645 LTQPVQVVRTRHDDAQNQYLQAASERGDLEELYKGLTILGKTGWKINRPVFDVMLEAWNS 704
Query: 536 GGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
G +A++V N ++ PEKP+ +D ++ + + HSQRC + ++ +AR
Sbjct: 705 GEEVANIVAANLNITEPEKPDADDREAVKAYYRAKTRADNKKMGNHSQRCYLNFQMEIAR 764
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
+E FY PHN+DFRGRAYP+ PY N +G+D CRG+L F+EGR LG+SGL WL+IHL+
Sbjct: 765 AYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLS 823
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
N++ G DK S + R F+ +H+DDI DSA+ L+GRRWWLKA DPFQCLA C+ L AL
Sbjct: 824 NVF--GFDKASFQEREQFSIDHVDDILDSANNGLKGRRWWLKAADPFQCLAACVELKNAL 881
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
P ++SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+ +A V
Sbjct: 882 SLPDPTKYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPSDIYTAVAEHVKA 941
Query: 775 IIQRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
I DA+ DP AKL+ ++ RK+VKQTVMT+VYGVT+IGA Q++R+L++
Sbjct: 942 SIASDAKAGDPI-------AKLMDGKITRKVVKQTVMTNVYGVTFIGATRQVRRQLEDHY 994
Query: 834 APMEEA-ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------------ 880
+ E E+ + + ++ +AL MF A I WLG+CA I
Sbjct: 995 PELAETDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRITRSLNPSQIEEIRKE 1054
Query: 881 ---------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVM 923
N V WTTPL LPVVQPYR+ + TSLQ+ T++ R +V
Sbjct: 1055 LEAPSKTDIAKKLKFNNSVIWTTPLKLPVVQPYREAKTRQIPTSLQLCTIKDIRGANEVN 1114
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
++Q AFPPNF+HSLD +HMM++A+ C + GL+F+ VHDS+WTHA D+D+MNR+LR+ F
Sbjct: 1115 RRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAVHDSFWTHAGDIDKMNRVLRDAF 1174
Query: 984 VELYEMPIFENL 995
V ++ I L
Sbjct: 1175 VRMHSDDIVGRL 1186
>gi|212530466|ref|XP_002145390.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
gi|210074788|gb|EEA28875.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
Length = 1378
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 302/793 (38%), Positives = 430/793 (54%), Gaps = 77/793 (9%)
Query: 261 YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKT 320
YA + LP D +A IT+ ++ L G +V +G ++ E + K+
Sbjct: 419 YADFLRLLPPDTLAAITVMHIIQLFARAGVEKGLKVPTIMTSLGQEVQNEFIAQSMIAKS 478
Query: 321 KKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK-PWGQD 379
++ + + + + RKK IK +KL + Q D + W D
Sbjct: 479 ERDSRHQK-----------FIKQVVENRKKKAGRIKFKKLLTEMKCDSRQIDSELNWPID 527
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPD------IFPAFTHALRTVSKETKGGSKK 433
AKVG ++ LL A ++P Q + P + PAF H S E G +K
Sbjct: 528 VHAKVGGALLSLLFDCA--KTPVVQ--EDPETKKRITIMEPAFQH-----SYEINRG-RK 577
Query: 434 YGVIECNPLVLKGLERTARHMV-IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTH-GAKQ 491
+G++ +P V + L R A + V +MPML P WTG+DKG S ++RT G
Sbjct: 578 FGLLHAHPEVTRRLIREAPNAVHARHMPMLSEPQPWTGFDKGGFLAQRSSIIRTTPGDTL 637
Query: 492 QRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVP 549
Q+ +K+ +K L V LD LG T W +NN V V+ W+ G + + +P
Sbjct: 638 QQSYMKKALEKDGLPEVRAGLDILGKTAWTINNDVFDVMLEAWNTGEAFPKIPPLDPKIP 697
Query: 550 LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
+PEKP +D ++ + K+R + HSQRC I ++ +AR K++ FY PHN+D
Sbjct: 698 MPEKPADDDIEAMKVYNNKLREAENLRSGLHSQRCFINFQMEIARAYKNQT-FYLPHNMD 756
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669
FRGRAYP+ YLN + +D R +L F +G+ LG++GL WLKIHL+N+Y G DK S + R
Sbjct: 757 FRGRAYPLPAYLNQMSADNARSLLLFKKGKALGEAGLRWLKIHLSNVY--GFDKASLQER 814
Query: 670 LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
FT HLDD+ DSA+K L GR+W+++AEDP+QCLA C L AL+ SP ++S +PVH
Sbjct: 815 EEFTMKHLDDVLDSANKGLHGRKWFMEAEDPWQCLAACCELRNALQLESPAEYMSRLPVH 874
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPD 789
QDGSCNGLQHYAALG D GA VNL ++P D+Y+G++ V + RDA +
Sbjct: 875 QDGSCNGLQHYAALGGDMEGAQHVNLEPGDRPKDIYTGVSDYVTEKVARDAAAGHEI--- 931
Query: 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAA 849
AKLL ++ RK+VKQTVMT+VYGVT++GA Q++R++ +EE G S Y A
Sbjct: 932 ---AKLLEGKIKRKIVKQTVMTNVYGVTFVGAIRQVRRQIAAHYPGLEEVP--GISKYIA 986
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIA-------------------------SENQPV 884
AL +F A I WLG+CA I+ +E P+
Sbjct: 987 SAIFEALSTIFSGAHSIQYWLGDCATRISQSISPDQLDLLAKHVLQANPSVKDDAETDPL 1046
Query: 885 R-------WTTPLGLPVVQPYRKLGRHTVKTSLQILTL-QRETEKVMVKR-QRTAFPPNF 935
+ WTTPLGLPVVQPYR + V T+LQ L + Q T + KR Q AFPPNF
Sbjct: 1047 KMFRSTIIWTTPLGLPVVQPYRAVKCQRVYTTLQTLNIIQNSTSGSVSKRKQLQAFPPNF 1106
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+HSLD +HMM++A+ C + GL F+ VHDS+WTHACDVD+MN LR+ F+ ++ I + L
Sbjct: 1107 IHSLDATHMMLSAIECYRQGLVFSAVHDSFWTHACDVDKMNIALRDCFIRMHSDDIIKRL 1166
Query: 996 LDSFQKSFPKLVF 1008
F+ + +F
Sbjct: 1167 AAEFRARYQGHIF 1179
>gi|448089097|ref|XP_004196715.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|448093284|ref|XP_004197746.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359378137|emb|CCE84396.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359379168|emb|CCE83365.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
Length = 1317
Score = 501 bits (1289), Expect = e-138, Method: Compositional matrix adjust.
Identities = 300/869 (34%), Positives = 452/869 (52%), Gaps = 96/869 (11%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEP 240
G+ R L++R V E W+ +E+ EL L KSL W+
Sbjct: 377 FNEGRQRQLELRGVDGAKEKWK---HEFEEL-------HKRGGLNVHKSLNVQLFKWYMD 426
Query: 241 LRDAIAKEQERCRMA------------------KHKVAYAPYFDQLPADMMAVITMHKLM 282
L I E E+C+ K ++ YAPY +P M VIT+ +L+
Sbjct: 427 LLPYIESEVEQCQKVLSGELTLKNCKPEEKQALKDRLYYAPYLILVPPKKMCVITILELL 486
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
L TGG R +A +G A+E E + + ++ + K K T
Sbjct: 487 KLNSTGGIIDGMRTARAVISVGRALELEYKSQRLMQAEGRSLSKKLK----------TTN 536
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI--QS 400
+ ++ ++ D K+ + W AKVGS + LL A + +
Sbjct: 537 QWKRFLRQRKDYNKEDPIAN-----------NEWDYPIYAKVGSVLASLLIHVAKVPVKG 585
Query: 401 PADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPY 458
+ PAF H + +K GV++ + +++ L +
Sbjct: 586 TDPTTGKTVRGMQPAFHHTYQFFQ------GQKLGVLKVHKSLVRQLAGNELGNSVQPQL 639
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNT 517
+PMLVPP W Y+ G + F + ++R + + ++ + L+P+++ L+ LGNT
Sbjct: 640 LPMLVPPRPWRSYNDGGYLFSQNNIVRIKDSAETTAYLRAASDMNNLDPIYDGLNVLGNT 699
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADL---VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKK 574
W VN +V V+ ++W+ G D+ ++ D+P P P + ++ +Q +VR
Sbjct: 700 AWTVNRKVFDVISKVWNTGEEYLDIPPIIEEPDLPSP-LPLNAEPSEKADYQRRVRKAVN 758
Query: 575 ENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILE 634
+ SQRCD KL +AR E+ ++PHNVDFRGRAYP+ P+ NHLG+D+ R +
Sbjct: 759 DAASARSQRCDTNYKLEIARGFIGEK-LFFPHNVDFRGRAYPISPHFNHLGNDMTRSLFL 817
Query: 635 FAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWW 694
F +G+ LG+ GL WLKIHLAN+Y GVDK + R+ F E++LD+IFDSA PL+GR+WW
Sbjct: 818 FWDGKKLGEQGLRWLKIHLANVY--GVDKAPLDERVKFVEDNLDNIFDSAKNPLDGRKWW 875
Query: 695 LKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVN 754
K + P+Q L+VC L+EA + P ++SHIPVHQDG+CNGLQHYAALG D GA VN
Sbjct: 876 EKGDKPWQVLSVCFELSEAYKLDDPTEYVSHIPVHQDGTCNGLQHYAALGGDIEGARQVN 935
Query: 755 LVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVY 814
L+ E+P DVY +A V + +A++ A L ++ RK+VKQTVMT+VY
Sbjct: 936 LIPAERPQDVYKFVAGLVQKRVDAEAEKGNKY------AIFLRDKITRKVVKQTVMTNVY 989
Query: 815 GVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
GVT++GA QI++++ + ++ S Y ++ E+F A I WLGE A
Sbjct: 990 GVTFVGAVLQIQKQIDHHFGKDDSDKVEEYSRYLTNHVFDSMRELFLGAHLIQDWLGESA 1049
Query: 875 KIIA-------------SENQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ 916
+ I+ + N+P V WTTPLGLP VQPYR + + T+LQ + +
Sbjct: 1050 RRISKSVRIDYEEKASVNSNKPRHLSSVIWTTPLGLPCVQPYRVTKKQIISTNLQDIVIS 1109
Query: 917 RE--TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
+V ++Q+ AFPPNFVHSLD +HM+MTA AC K GL+FA VHDSYWTHA +V +
Sbjct: 1110 DPFGASQVDARKQQAAFPPNFVHSLDATHMLMTAAACGKDGLSFASVHDSYWTHAANVPK 1169
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSF 1003
MN +R++FV+L+E + + D F+K +
Sbjct: 1170 MNAHIRDQFVKLHEENLIIKIRDEFEKRY 1198
>gi|367034009|ref|XP_003666287.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
gi|347013559|gb|AEO61042.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
Length = 1402
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 315/885 (35%), Positives = 462/885 (52%), Gaps = 103/885 (11%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWFEPLRDAIAKEQ---- 249
Q ++E + + A +RE + L L P + S W + L + +EQ
Sbjct: 363 QARLERDCVDAAIARWREENEQLMSMGLNTQLSTPSLNSKLYDWHQALEARLIQEQAKVE 422
Query: 250 ------ERCRMAKHKVAYAPYFDQLPAD-MMAVITMHKLMGLLMTGGEHG--RARVVQAA 300
+ R + Y P+ Q PA+ + AV + L L M G + G + +VQ
Sbjct: 423 ASLSAPRKSREDMERCVYGPHLLQSPANRLAAVAILSALSSLAMHGADKGIPVSNMVQQL 482
Query: 301 CIIGDAIEQEVRIHKFLEKTK-KKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
I + + I K L K+K +K ++ + D + T TT + T
Sbjct: 483 AKIAEEDIRAQAIAKNLPKSKPRKQKSARQLMRLHDAAPTATT-----KSSPTATASPAS 537
Query: 360 LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI--QSPADQLADAPPDIFPAFT 417
PA + + W +AK G+ ++ L TA I + + + + PAFT
Sbjct: 538 QPATNS--EPSEFASRWPIAIKAKFGAVILGALMDTAKIVVEREHPETKEKVTQVQPAFT 595
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP-YMPMLVPPVKWTGYDKGAH 476
H + + K G ++ GVI+ N +++ ++R R + ++PM+V P W+ +DKG
Sbjct: 596 HTV-----QLKKG-RRVGVIQPNRSLIELMKREPRGEALARHLPMVVEPEPWSKFDKGGF 649
Query: 477 FFLPSYVMR--THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
PS ++R H Q+ + +E + LD LG T W++N V V+ W+
Sbjct: 650 ITSPSPLVRLKNHEKDQRIYAEAAIERGDMEQMMRGLDVLGKTAWKINRPVFDVMLEAWN 709
Query: 535 CGGRLADLVDRN-DVPLPEKPE-TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
G A+L + +P+P +P+ T+D + R W V+ + E HS RC + +L +
Sbjct: 710 TGEEFANLPALDPKIPIPPEPDSTDDPMKRRLWLRAVKAAENEKSGLHSVRCFMNFQLEI 769
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR +D+ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L FA+GR LGKSGL WLK+H
Sbjct: 770 ARAFRDQT-FYFPHNIDFRGRAYPIPTYLNHMGADNMRGLLLFAKGRPLGKSGLAWLKVH 828
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
L+N+Y G DK S + R F + +L++IFDSAD PL G+RWWL+AEDP+QCLA C L
Sbjct: 829 LSNVY--GFDKASLKEREEFADRNLENIFDSADNPLTGKRWWLQAEDPWQCLATCFELKA 886
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
AL S P ++SH+PVHQDG+CNGLQHYAALG DT GA VNL+ ++PADVYS +A
Sbjct: 887 ALSSPDPTAYVSHLPVHQDGTCNGLQHYAALGGDTWGAQQVNLLPGDRPADVYSAVAE-- 944
Query: 773 LVIIQRDAQRDPA---VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
++Q+ D A F A+ K + RK+VKQTVMT+VYGVT++GA+ Q++++L
Sbjct: 945 --LVQKQVTEDLANGNEFAQAMDGK-----ITRKVVKQTVMTNVYGVTFVGAKKQVQKQL 997
Query: 830 KERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP-- 883
+E+ AS AAKV + AL MF+ A I +WLGE + P
Sbjct: 998 DSLYPDIEKETGLSSGVLASYIAAKVFM-ALSTMFRGAHDIQNWLGEIGGRVCRAVTPEQ 1056
Query: 884 -------------------------------------------VRWTTPLGLPVVQPYRK 900
+ WTTPL +PVVQPYRK
Sbjct: 1057 LDRIAEASGEKVGSGEESKSTKKKAKASSKAGDEDLASHFRNTLVWTTPLRMPVVQPYRK 1116
Query: 901 LGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTF 958
G + T LQ +LT + V ++Q AFPPNF+HSLD SHMM++A+ C GLTF
Sbjct: 1117 SGTRLISTCLQDLVLTNVDRDDPVNRRKQLQAFPPNFIHSLDASHMMLSALECDAIGLTF 1176
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
A VHDS+WTHA DVD MNR++R+ F+ +++ + L F+ +
Sbjct: 1177 AAVHDSFWTHAADVDAMNRVIRDAFIRIHQEDVIGRLKSEFEARY 1221
>gi|225680077|gb|EEH18361.1| DNA-directed RNA polymerase [Paracoccidioides brasiliensis Pb03]
Length = 1319
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 307/870 (35%), Positives = 454/870 (52%), Gaps = 87/870 (10%)
Query: 193 KMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPY--MKSLFLGWFEPLRDAI----- 245
+MRQ ++E++ E A + + ++ + + P +P M +L W L I
Sbjct: 251 EMRQRRLESDCVESAIARWHKESENLRKVGVNP-IPSKPMGALLYDWHTQLMSKIKEELE 309
Query: 246 --AKEQERCRMAKH---KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
+ +++ RM +V +PY + D +A +T+ L G ++
Sbjct: 310 RIEESEQKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVKLTILV 369
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
+G +I E +F E +NK G S + +KL K T +K ++
Sbjct: 370 MYLGKSIHDEFMAMQF-------RELENKSSSNGRTSKFI----DKLVHKGT---RKAQV 415
Query: 361 PAVRRIVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH 418
R I K + +P W +AK+G+ + +L +A + P +
Sbjct: 416 QWKRLIAKFEHSQRPVEWSPIVQAKIGACLALMLLSSATV--PVFSKDPKTNKTKRSDQM 473
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHF 477
A R V + +G + G + + +++ L R ++ ++PM+ PP WT G
Sbjct: 474 AFRRVYQLERGF--RVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPWTSARDGGFL 531
Query: 478 FLPSYVMRT-HGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
PS V+R G Q V+ + L+ VF L LG T W++N VL V+ W+
Sbjct: 532 KTPSPVLRVKEGDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMFEAWNS 591
Query: 536 GGRLADLV-DRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
G +A+L + D+P PE+P TED L + + HSQRC +L +AR
Sbjct: 592 GEEIANLAPETPDIPEPERPNTEDRDALTDYYRAKMHAANTRSSYHSQRCFQNFQLEIAR 651
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
++E FY PHN+DFRGRAYPM PY N +G+D CRG+L F +GR LG SGL WLKIHLA
Sbjct: 652 AYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFNKGRELGTSGLRWLKIHLA 710
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
N++ G DK S + R F+ +HL+DI DSA L+G++WWL A DPFQCLA CI LT A+
Sbjct: 711 NVF--GFDKASFQEREQFSMDHLEDIRDSAINGLKGKKWWLDAADPFQCLAACIELTNAM 768
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
+ P F+SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+G+A V
Sbjct: 769 QLEDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKA 828
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
IQ+DA AKLL +++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 829 SIQKDAADGNET------AKLLENKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLLDHYP 882
Query: 835 PMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP---------- 883
+ + + G + Y A+ ALG MF A I WLG+CA I+ P
Sbjct: 883 ELFHSGVVGQCATYIARKIFAALGSMFTGAHNIQFWLGDCANRISQSLSPEQIEILSDEK 942
Query: 884 ----------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
V WTTPL LPV QPYR+ V + LQ L++
Sbjct: 943 GLEAVGNSRSSKKLAKIIKSPKAHFKSTVVWTTPLKLPVAQPYREAACVRVFSDLQQLSI 1002
Query: 916 Q--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
+ + ++ + ++Q AFPPNFVHSLD +HM ++AV C + GL+F+ VHDS+WTHA DVD
Sbjct: 1003 RNPQASDVINKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAVHDSFWTHAADVD 1062
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSF 1003
MNR+LR+ F+ ++ I + L F+ +
Sbjct: 1063 TMNRVLRDAFIRMHSEDIVQRLASEFKTRY 1092
>gi|157823583|ref|NP_001100236.1| DNA-directed RNA polymerase, mitochondrial [Rattus norvegicus]
gi|149034664|gb|EDL89401.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_c [Rattus norvegicus]
Length = 1203
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/690 (40%), Positives = 393/690 (56%), Gaps = 53/690 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A + P H S +
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSFRS------YR 585
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + ++R P QL +AL LGN WRVN R+L ++ +I+ G RL R+
Sbjct: 646 TTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRLGVPPPRS 705
Query: 547 DVPLPEKPETE------DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P P K + +++LRK ++ K RE HS R + +LS+A+ ++D
Sbjct: 706 EAPRPAKHQLPPGSTPVHKSELRK---ELARCLKAAREMHSLRSEALYRLSLAQHLRDRV 762
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 763 -FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 820
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S RLAF + + +I DSAD PL G++WW+KA++P+Q LA C+ + +A+RS P
Sbjct: 821 RKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDPT 880
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V + Q+DA
Sbjct: 881 AYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELRQQDA 940
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
+ V A+ L V RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 941 KEGLQV------AQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF- 993
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY +
Sbjct: 994 VWEASHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPIIQPYHR 1053
Query: 901 LGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ VK LQ +T +++K +Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1054 ESKIQVKGGLQSITFTSSVDDSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1113
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL----------- 1006
F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F +
Sbjct: 1114 FVSVHDCFWTHAADIPMMNEVCREQFVRLHSEPILEDLAKFLEKRFCSVSKSLKPSELAL 1173
Query: 1007 ------VFPPLPERGDFDLREVLGSPYFFN 1030
LPE G FDL +V+ S YFF+
Sbjct: 1174 ITKLQETLRSLPETGTFDLGQVIRSTYFFS 1203
>gi|432101125|gb|ELK29409.1| DNA-directed RNA polymerase, mitochondrial [Myotis davidii]
Length = 1219
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/709 (40%), Positives = 406/709 (57%), Gaps = 51/709 (7%)
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
V + +Q A+ QD +PW ++G ++ E+L QT + S Q D
Sbjct: 533 VMSRLPRQHWEALGTTEASQD--QPWPLTVVVQLGKQLAEVLVQTVKMPSNLAQQQDTQ- 589
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPV 466
+ P H S ++ G+++ +P ++ L+ TA + + +PML PP+
Sbjct: 590 KLIPVLYHVYSFQS------FRQIGILKPHPAFIQ-LQETAAERTMTFESAEVPMLCPPL 642
Query: 467 KWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRV 525
WT GA P+ +MR+ G Q + ++ P +L +AL LGN WRVN RV
Sbjct: 643 PWTSPHSGAFLLSPTKLMRSLEGTIQHQRLLEGCPPTELHGALDALTQLGNCAWRVNGRV 702
Query: 526 LSVLDRIWSCGG--RLADLVDRNDVP------LPEKPETEDEAQLRKWQWKVRNVKKENR 577
L ++ I++ G RL ++ P LP E + +LR+ ++ K R
Sbjct: 703 LDLVLTIFNAKGCPRLGVPSPASEAPRPSKHRLPANASPERKTELRR---ELARCLKVAR 759
Query: 578 ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE 637
E HS R D +LS+A+ ++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+
Sbjct: 760 EMHSLRTDALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQ 818
Query: 638 GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
GR LG GL+WLKIHL NL G + S + RLAF + +DDI DSAD+P+ GR+WW++A
Sbjct: 819 GRPLGPHGLNWLKIHLVNL-TGLKKRESLQARLAFADEIMDDILDSADQPMTGRKWWMEA 877
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA 757
++P+Q LA C+ + +A+R+ +P ++SH PVHQDGSCNGLQHYAALGRD++GAA+VNLV
Sbjct: 878 DEPWQALACCMEIAKAVRAPNPAAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLVP 937
Query: 758 REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVT 817
+ P DVYS +AA+V V ++DA+R V A +L + RK+VKQTVMT VYGVT
Sbjct: 938 SDVPQDVYSSVAAQVEVFRRQDAERGVQV------ATVLEGFISRKVVKQTVMTVVYGVT 991
Query: 818 YIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKII 877
G R QI++RL+E +E ++ AS Y + +L EMF + R I WL E A++I
Sbjct: 992 RYGGRLQIEKRLRELSDFPQEF-VWQASHYLVRQVFNSLQEMFSSTRAIQRWLTESARLI 1050
Query: 878 ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPN 934
A V W TPLG+P++QPY + ++ +Q LT +K +Q+ FPPN
Sbjct: 1051 ARSGLAVEWVTPLGIPIIQPYHHDSKVSISGGIQSLTFCSSGDTNQKPNTLKQKNGFPPN 1110
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
F+HSLD SHMM+TA+ C + GLTF VHD +WTHA DV MN++ RE+FV L+ PI +
Sbjct: 1111 FIHSLDSSHMMLTALHCYRKGLTFVSVHDCFWTHAADVAIMNQVCREQFVRLHSQPILHD 1170
Query: 995 LL-----------DSFQKSFPKL--VFPPLPERGDFDLREVLGSPYFFN 1030
L S KL + +P+ G FDL +V S YFF+
Sbjct: 1171 LSRFLVERYCSGPRSTNAQVVKLQEMLLSVPKTGTFDLDQVKHSTYFFS 1219
>gi|226291871|gb|EEH47299.1| DNA-directed RNA polymerase [Paracoccidioides brasiliensis Pb18]
Length = 1408
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 307/870 (35%), Positives = 454/870 (52%), Gaps = 87/870 (10%)
Query: 193 KMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPY--MKSLFLGWFEPLRDAI----- 245
+MRQ ++E++ E A + + ++ + + P +P M +L W L I
Sbjct: 364 EMRQRRLESDCVESAIARWHKESENLRKVGVNP-IPSKPMGALLYDWHTQLMSKIKEELE 422
Query: 246 --AKEQERCRMAKH---KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
+ +++ RM +V +PY + D +A +T+ L G ++
Sbjct: 423 RIEESEQKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVKLTILV 482
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
+G +I E +F E +NK G S + +KL K T +K ++
Sbjct: 483 MYLGKSIHDEFMAMQF-------RELENKSSSNGRTSKFI----DKLAHKGT---RKAQV 528
Query: 361 PAVRRIVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH 418
R I K + +P W +AK+G+ + +L +A + P +
Sbjct: 529 QWKRLIAKFEHSQRPVEWSPIVQAKIGACLALMLLSSATV--PVFSKDPKTNKTKRSDQM 586
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHF 477
A R V + +G + G + + +++ L R ++ ++PM+ PP WT G
Sbjct: 587 AFRRVYQLERGF--RVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPWTSARDGGFL 644
Query: 478 FLPSYVMRT-HGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
PS V+R G Q V+ + L+ VF L LG T W++N VL V+ W+
Sbjct: 645 KTPSPVLRVKEGDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNS 704
Query: 536 GGRLADLV-DRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
G +A+L + D+P PE+P TED L + + HSQRC +L +AR
Sbjct: 705 GEEIANLAPETPDIPEPERPNTEDRDALTDYYRAKVHAANTRSSYHSQRCFQNFQLEIAR 764
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
++E FY PHN+DFRGRAYPM PY N +G+D CRG+L F +GR LG SGL WLKIHLA
Sbjct: 765 AYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFNKGRELGTSGLRWLKIHLA 823
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
N++ G DK S + R F+ +HL+DI DSA L+G++WWL A DPFQCLA CI LT A+
Sbjct: 824 NVF--GFDKASFQEREQFSMDHLEDIRDSAINGLKGKKWWLDAADPFQCLAACIELTNAM 881
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
+ P F+SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+G+A V
Sbjct: 882 QLEDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKA 941
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
IQ+DA AKLL +++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 942 SIQKDAADGNET------AKLLENKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLLDHYP 995
Query: 835 PMEEAELFGA-SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP---------- 883
+ + + G + Y A+ ALG MF A I WLG+CA I+ P
Sbjct: 996 ELFHSGVVGQYATYIARKIFAALGSMFTGAHNIQFWLGDCANRISQSLSPEQIEILSDEK 1055
Query: 884 ----------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
V WTTPL LPV QPYR+ V + LQ L++
Sbjct: 1056 GLEAVGNSRSSKKLAKIIKSPKAHFKSTVVWTTPLKLPVAQPYREAACVRVFSDLQQLSI 1115
Query: 916 Q--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
+ + ++ + ++Q AFPPNFVHSLD +HM ++AV C + GL+F+ VHDS+WTHA DVD
Sbjct: 1116 RNPQASDVINKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAVHDSFWTHAADVD 1175
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSF 1003
MNR+LR+ F+ ++ I + L F+ +
Sbjct: 1176 TMNRVLRDAFIRMHSEDIVQRLASEFKTRY 1205
>gi|154286378|ref|XP_001543984.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407625|gb|EDN03166.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1397
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 310/872 (35%), Positives = 455/872 (52%), Gaps = 91/872 (10%)
Query: 193 KMRQVKIETEAWEKAANEYR---ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI---- 245
+MRQ ++E++ E A ++ E+L + + P+ P M + W L I
Sbjct: 364 QMRQRRLESDCVESAIARWKKESEMLHRVGVNPI-PSKP-MGAFLYDWHTQLMSRINEEL 421
Query: 246 ---AKEQERCRMA---KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
+ +++ RM+ +V +PY + D +A +T+ L G ++
Sbjct: 422 ERIEESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTGL 481
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+G A+ E + E +++ + + +KL K T +K +
Sbjct: 482 VMYVGKAVYDEYLAMQLREL-----------EKKSKPTKKTSALIDKLVHKGT---RKAQ 527
Query: 360 LPAVRRIVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPA-DQLADAPPDIFPAF 416
+ R I + + +P W +AK+G+ + +L TA + P DQ + A
Sbjct: 528 IQWRRIIARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKDQKTNQQKQTDQA- 586
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGA 475
A R V + +G + G + N +++ L R ++ ++PM+ PP WT G
Sbjct: 587 --AFRRVYQLERGF--RVGYVHANDYIIEKLRREPLGELLAKHLPMVCPPRPWTSSRGGG 642
Query: 476 HFFLPSYVMRT-HGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
PS VMR G Q V+ + L+ VF L LG T W++N VL+V+ W
Sbjct: 643 FLEYPSTVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAW 702
Query: 534 SCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
+ G +A+L N ++ PEKP+T+D L+ + + HSQRC +L +
Sbjct: 703 NSGEEIANLAPENPNIIEPEKPDTDDRDILKDYYRAKMHATNARTGYHSQRCFQNFQLEI 762
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR ++E FY PHN+DFRGRAYPM PY N +G+D CRG+L F++GR LG SGL WLKIH
Sbjct: 763 ARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIH 821
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LAN++ G DK S + R F +HL+DI DSA L+G+RWWL A DPFQCLA CI LT
Sbjct: 822 LANVF--GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTN 879
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
A+ P F+SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+G+A V
Sbjct: 880 AMALEDPTKFVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHV 939
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
IQ+DA AKLL ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 940 KQSIQKDAANGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVDH 993
Query: 833 GAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP-------- 883
+ + + G + Y A+ ALG MF A I WLG+CA I+ P
Sbjct: 994 YPDLLHSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSPEQVEALSD 1053
Query: 884 ------------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
V WTTPL LPV QPYR V + LQ L
Sbjct: 1054 EGNLKVVGRFQGAKKLAKNIKDPKSHFKSTVVWTTPLKLPVAQPYRDAACVKVFSDLQQL 1113
Query: 914 TLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACD 971
+++ + ++ V ++Q AFPPNFVHSLD +HM ++AV C + GL+F+ VHDS+WTHA D
Sbjct: 1114 SIRNPQASDVVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAVHDSFWTHAAD 1173
Query: 972 VDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
VD MNR+LR+ FV ++ I + L F+ +
Sbjct: 1174 VDTMNRVLRDAFVRMHSEDIIQRLASEFKTRY 1205
>gi|350636444|gb|EHA24804.1| hypothetical protein ASPNIDRAFT_48810 [Aspergillus niger ATCC 1015]
Length = 1367
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 307/867 (35%), Positives = 447/867 (51%), Gaps = 84/867 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLP----YMKSLFLGWFEPLRDAIAKEQE 250
RQ ++E + + A N +R+ +D QK N + S+ W L I E +
Sbjct: 353 RQKQLEANSIQAALNRWRQETID--RQKAGLNTTGSEKRLGSIINQWHTDLVSRIEAELK 410
Query: 251 RCRMAKHK----------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
++ K Y + + +D +A +T+ ++ GG ++ A
Sbjct: 411 LVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSVLSSFGRGGMDSGLKLASIA 470
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
IG + E FL + K E+ D + +Q +K D + K
Sbjct: 471 TGIGSELHDE-----FLAELTLKKESA------ADAARLRAVKQTLSLRKQKD--GRAKW 517
Query: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF--PAFTH 418
+ R ++ D W +AKVG+ ++ L + A D P+I PAF H
Sbjct: 518 HTIVRNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQH 577
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGY-DKGAH 476
A + ++ G I +P ++K + + ++ ++PML P W G D G H
Sbjct: 578 AYQI------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPMLSKPRPWKGVSDGGYH 631
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
+ + + T G Q VK + LE + + LD LGNT W +N V V+ W+
Sbjct: 632 VYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWVINEDVFKVMLEAWNS 691
Query: 536 GGRLADLVDRNDVPLPE---KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
G +ADL PE EA+ +KW +R ++ HSQRC ++ V
Sbjct: 692 GEPVADLAPLEPELPHPPKPSPEEGYEAE-KKWDNDMREIENRRAGFHSQRCFQNFQMEV 750
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR ++E FY PHN+DFRGRAYP+ PYLN +G+D RG+L F++ + LG+SGL WLK+
Sbjct: 751 ARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQAKPLGESGLRWLKVQ 809
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
+ANL G DK S R FT +HLDD+ DSA+ L GRRWWLKA+DP+QCLA C L
Sbjct: 810 IANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKADDPWQCLAACCELRN 867
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
AL+ P F S +PVHQDGSCNGLQHYAALG D +GA VNL ++P+DVY+G+A V
Sbjct: 868 ALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPSDRPSDVYTGVAEFV 927
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+ R+A + +V AK L ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 928 KEAVAREAAQGHSV------AKYLDGKITRKVVKQTVMTNVYGVTFMGAMKQVRKQLIDH 981
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP--------- 883
+ + + + Y A+ ALG MF A I WLG+CA I P
Sbjct: 982 YPELTQDQKHQGAIYIARKVFEALGTMFNGAHDIQYWLGDCASRITQSLAPEQIEQIAKE 1041
Query: 884 --------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM 923
V WTTPLGLPVVQPYR + T+LQ L++ + +
Sbjct: 1042 AMNPEDAKQMEDPTKKFRSTVIWTTPLGLPVVQPYRVRKARRIYTTLQDLSIVDGSSGDV 1101
Query: 924 V--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
V ++Q AFPPNF+HSLD +HMM++A+AC +AGL F+ VHDS+WTHACD+D MN++LRE
Sbjct: 1102 VSKRKQLQAFPPNFIHSLDATHMMLSAIACHRAGLQFSAVHDSFWTHACDIDSMNQLLRE 1161
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVF 1008
FV ++ + + L F+ + K +F
Sbjct: 1162 AFVRMHSDDVVKRLAAEFEVRYSKNLF 1188
>gi|134082638|emb|CAK42532.1| unnamed protein product [Aspergillus niger]
Length = 1367
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 308/867 (35%), Positives = 449/867 (51%), Gaps = 84/867 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLP----YMKSLFLGWFEPLRDAIAKEQE 250
RQ ++E + + A N +R+ +D QK N + S+ W L I E +
Sbjct: 353 RQKQLEANSIQAALNRWRQETID--RQKAGLNTTGSEKRLGSIINQWHTDLVSRIEAELK 410
Query: 251 RCRMAKHK----------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
++ K Y + + +D +A +T+ ++ GG ++ A
Sbjct: 411 LVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSVLSSFGRGGMDSGLKLASIA 470
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
IG + E FL + K E+ D + +Q +K D + K
Sbjct: 471 TGIGSELHDE-----FLAELTLKKESA------ADAARLRAVKQTLSLRKQKD--GRAKW 517
Query: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF--PAFTH 418
+ R ++ D W +AKVG+ ++ L + A D P+I PAF H
Sbjct: 518 HTIVRNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQH 577
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGY-DKGAH 476
A + ++ G I +P ++K + + ++ ++PML P W G D G H
Sbjct: 578 AYQI------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPMLSKPRPWKGVSDGGYH 631
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
+ + + T G Q VK + LE + + LD LGNT W +N V V+ W+
Sbjct: 632 VYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWVINEDVFKVMLEAWNS 691
Query: 536 GGRLADLVDRNDVPLPE-KPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
G +ADL KP E+ EA+ +KW +R ++ HSQRC ++ V
Sbjct: 692 GEPVADLAPLEPELPHPPKPSPEEGYEAE-KKWDNDMREIENRRAGFHSQRCFQNFQMEV 750
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR ++E FY PHN+DFRGRAYP+ PYLN +G+D RG+L F++ + LG+SGL WLK+
Sbjct: 751 ARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQAKPLGESGLRWLKVQ 809
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
+ANL G DK S R FT +HLDD+ DSA+ L GRRWWLKA+DP+QCLA C L
Sbjct: 810 IANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKADDPWQCLAACCELRN 867
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
AL+ P F S +PVHQDGSCNGLQHYAALG D +GA VNL ++P+DVY+G+A V
Sbjct: 868 ALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPSDRPSDVYTGVAEFV 927
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+ R+A + +V AK L ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 928 KEAVAREAAQGHSV------AKYLDGKITRKVVKQTVMTNVYGVTFMGAMKQVRKQLIDH 981
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP--------- 883
+ + + + Y A+ ALG MF A I WLG+CA I P
Sbjct: 982 YPELTQDQKHQGAIYIARKVFEALGTMFNGAHDIQYWLGDCASRITQSLAPEQIEQIAKE 1041
Query: 884 --------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM 923
V WTTPLGLPVVQPYR + T+LQ L++ + +
Sbjct: 1042 AMNPEDAKQMEDPTKKFRSTVIWTTPLGLPVVQPYRVRKARRIYTTLQDLSIVDGSSGDV 1101
Query: 924 V--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
V ++Q AFPPNF+HSLD +HMM++A+AC +AGL F+ VHDS+WTHACD+D MN++LRE
Sbjct: 1102 VSKRKQLQAFPPNFIHSLDATHMMLSAIACHRAGLQFSAVHDSFWTHACDIDSMNQLLRE 1161
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVF 1008
FV ++ + + L F+ + K +F
Sbjct: 1162 AFVRMHSDDVVKRLAAEFEVRYSKNLF 1188
>gi|317035455|ref|XP_001397108.2| DNA-dependent RNA polymerase family protein [Aspergillus niger CBS
513.88]
Length = 1640
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 308/867 (35%), Positives = 449/867 (51%), Gaps = 84/867 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLP----YMKSLFLGWFEPLRDAIAKEQE 250
RQ ++E + + A N +R+ +D QK N + S+ W L I E +
Sbjct: 626 RQKQLEANSIQAALNRWRQETID--RQKAGLNTTGSEKRLGSIINQWHTDLVSRIEAELK 683
Query: 251 RCRMAKHK----------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
++ K Y + + +D +A +T+ ++ GG ++ A
Sbjct: 684 LVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSVLSSFGRGGMDSGLKLASIA 743
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
IG + E FL + K E+ D + +Q +K D + K
Sbjct: 744 TGIGSELHDE-----FLAELTLKKESA------ADAARLRAVKQTLSLRKQKD--GRAKW 790
Query: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF--PAFTH 418
+ R ++ D W +AKVG+ ++ L + A D P+I PAF H
Sbjct: 791 HTIVRNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQH 850
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGY-DKGAH 476
A + ++ G I +P ++K + + ++ ++PML P W G D G H
Sbjct: 851 AYQI------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPMLSKPRPWKGVSDGGYH 904
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
+ + + T G Q VK + LE + + LD LGNT W +N V V+ W+
Sbjct: 905 VYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWVINEDVFKVMLEAWNS 964
Query: 536 GGRLADLVDRNDVPLPE-KPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
G +ADL KP E+ EA+ +KW +R ++ HSQRC ++ V
Sbjct: 965 GEPVADLAPLEPELPHPPKPSPEEGYEAE-KKWDNDMREIENRRAGFHSQRCFQNFQMEV 1023
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR ++E FY PHN+DFRGRAYP+ PYLN +G+D RG+L F++ + LG+SGL WLK+
Sbjct: 1024 ARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQAKPLGESGLRWLKVQ 1082
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
+ANL G DK S R FT +HLDD+ DSA+ L GRRWWLKA+DP+QCLA C L
Sbjct: 1083 IANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKADDPWQCLAACCELRN 1140
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
AL+ P F S +PVHQDGSCNGLQHYAALG D +GA VNL ++P+DVY+G+A V
Sbjct: 1141 ALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPSDRPSDVYTGVAEFV 1200
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+ R+A + +V AK L ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 1201 KEAVAREAAQGHSV------AKYLDGKITRKVVKQTVMTNVYGVTFMGAMKQVRKQLIDH 1254
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP--------- 883
+ + + + Y A+ ALG MF A I WLG+CA I P
Sbjct: 1255 YPELTQDQKHQGAIYIARKVFEALGTMFNGAHDIQYWLGDCASRITQSLAPEQIEQIAKE 1314
Query: 884 --------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM 923
V WTTPLGLPVVQPYR + T+LQ L++ + +
Sbjct: 1315 AMNPEDAKQMEDPTKKFRSTVIWTTPLGLPVVQPYRVRKARRIYTTLQDLSIVDGSSGDV 1374
Query: 924 V--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
V ++Q AFPPNF+HSLD +HMM++A+AC +AGL F+ VHDS+WTHACD+D MN++LRE
Sbjct: 1375 VSKRKQLQAFPPNFIHSLDATHMMLSAIACHRAGLQFSAVHDSFWTHACDIDSMNQLLRE 1434
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVF 1008
FV ++ + + L F+ + K +F
Sbjct: 1435 AFVRMHSDDVVKRLAAEFEVRYSKNLF 1461
>gi|2114396|gb|AAB58255.1| mitochondrial RNA polymerase [Homo sapiens]
Length = 1230
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/687 (41%), Positives = 399/687 (58%), Gaps = 51/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ ++ + +K RE HS R + +LS+A+ ++D
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRR---ELAHCQKVAREMHSLRAEALYRLSLAQHLRDR 792
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 793 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 850
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 851 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 910
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 911 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 970
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L S + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 971 AQRGMRV------AQVLESFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 1024
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 1025 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 1083
Query: 900 KLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 1084 LDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1143
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----------- 1004
LTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 1144 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQ 1203
Query: 1005 -KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1204 LKETLQAVPKPGAFDLEQVKRSTYFFS 1230
>gi|358373876|dbj|GAA90472.1| mitochondrial DNA-directed RNA polymerase [Aspergillus kawachii IFO
4308]
Length = 1367
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 307/867 (35%), Positives = 447/867 (51%), Gaps = 84/867 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLP----YMKSLFLGWFEPLRDAIAKEQE 250
RQ ++E + + A N +R+ +D QK N + S+ W L I E +
Sbjct: 353 RQKQLEANSIQAALNRWRQETID--RQKAGLNTTGSEKRLGSIINQWHTDLVSRIEAELK 410
Query: 251 RCRMAKHK----------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
++ K Y + + +D +A +T+ ++ GG ++ A
Sbjct: 411 LVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSVLSSFGRGGMDSGLKLASIA 470
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
IG + E FL + K E+ D + +Q +K D + K
Sbjct: 471 TGIGSELHDE-----FLAELTLKKESA------ADAARLKAVKQTLSLRKQKD--GRAKW 517
Query: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF--PAFTH 418
+ R ++ D W +AKVG+ ++ L + A D P+I PAF H
Sbjct: 518 HTIVRNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQH 577
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGY-DKGAH 476
A + ++ G I +P ++K + + ++ ++PML P W G D G H
Sbjct: 578 AYQI------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPMLSKPRPWKGVSDGGYH 631
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
+ + + T G Q VK + LE + + LD LGNT W +N V V+ W+
Sbjct: 632 VYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWVINEDVFKVMLEAWNS 691
Query: 536 GGRLADLVDRNDVPLPE---KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
G +ADL PE EA+ +KW +R ++ HSQRC ++ V
Sbjct: 692 GEPVADLAPLEPELPHPPKPSPEEGYEAE-KKWDNDMREIENRRAGFHSQRCFQNFQMEV 750
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR ++E FY PHN+DFRGRAYP+ PYLN +G+D RG+L F++ + LG+SGL WLK+
Sbjct: 751 ARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQAKPLGESGLRWLKVQ 809
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
+ANL G DK S R FT +HLDD+ DSA+ L GRRWWLKA+DP+QCLA C L
Sbjct: 810 IANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKADDPWQCLAACCELRN 867
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
AL+ P F S +PVHQDGSCNGLQHYAALG D +GA VNL ++P+DVY+G+A V
Sbjct: 868 ALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPSDRPSDVYTGVAEFV 927
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+ R+A + +V AK L ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 928 KEAVAREAAQGHSV------AKYLDGKITRKVVKQTVMTNVYGVTFMGAMKQVRKQLIDH 981
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP--------- 883
+ + + + Y A+ ALG MF A I WLG+CA I P
Sbjct: 982 YPELFQDQKHQGAIYIARKVFEALGTMFNGAHDIQYWLGDCASRITQSLSPEQIEQIAKE 1041
Query: 884 --------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM 923
V WTTPLGLPVVQPYR + T+LQ L++ + +
Sbjct: 1042 AMNPEEAKQMEDPTKKFRSTVIWTTPLGLPVVQPYRVRKARRIYTTLQDLSIVDGSSGDV 1101
Query: 924 V--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
V ++Q AFPPNF+HSLD +HMM++A+AC +AGL F+ VHDS+WTHACD+D MN++LRE
Sbjct: 1102 VSKRKQLQAFPPNFIHSLDATHMMLSAIACHRAGLQFSAVHDSFWTHACDIDSMNQLLRE 1161
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVF 1008
FV ++ + + L F+ + K +F
Sbjct: 1162 AFVRMHSDDVVKRLAAEFEVRYSKNLF 1188
>gi|116195484|ref|XP_001223554.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
gi|88180253|gb|EAQ87721.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
Length = 1414
Score = 498 bits (1281), Expect = e-137, Method: Compositional matrix adjust.
Identities = 308/901 (34%), Positives = 468/901 (51%), Gaps = 95/901 (10%)
Query: 183 GMGSGKYRMLKMRQV--KIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWF 238
G+ G + + R+V ++E + + A +RE + L L P + S W
Sbjct: 349 GLDIGSLPIAQRREVQARLEKDCVDAAVARWREENEALMGMGLNTQLSTPTLNSKLYDWH 408
Query: 239 EPLRDAIAKEQERCRMAKH----------KVAYAPYFDQLPADMMAVIT-MHKLMGLLMT 287
+ L A+EQ + +++ + Y P+ Q PA +A +T + L L M
Sbjct: 409 QALEARFAEEQAKVEVSESATKKSKEDMDRCVYGPHLLQSPAKRLAAVTILSALSSLAMH 468
Query: 288 GGEHG--RARVVQAACIIGD----AIEQEVRIHKFLEKTKKKNETKN----KEDEEGDES 337
G + G + +VQ I + A Q R K +++ + + G+ +
Sbjct: 469 GADKGIPVSNMVQQLAKIAEEDIRAQNQAKRAPNAKSKPRRQQSARQLIRLYDSTPGEPA 528
Query: 338 NTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP------WGQDARAKVGSRVIEL 391
E + + PA + ++ W +AKVG+ ++
Sbjct: 529 AVPEAEPTAAAEAEPAAEPESMPPAPPAVTDNSFAYRADSVEARWPMLIKAKVGAVLLAA 588
Query: 392 LTQTAYI--QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLER 449
L TA I Q + + PAFTHA++ KG +K GVI+ N +++ ++R
Sbjct: 589 LMDTAKIVVQREHPETKEKLSQTQPAFTHAVQL----KKG--RKIGVIQPNRELIELMKR 642
Query: 450 TARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMR--THGAKQQRDTVKRTPKKQLEP 506
R + ++PM+V PV W+ +DKG P+ ++R H Q+ + +E
Sbjct: 643 EPRGEALARHLPMVVEPVPWSKFDKGGFISAPTPLIRLKNHEKDQRIYAEAAIERGDMEQ 702
Query: 507 VFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPE-TEDEAQLRK 564
+ LD LG T W++N V V+ W+ G A+L + +P+P +P+ T+D + R
Sbjct: 703 MMRGLDVLGKTAWKINRPVFDVMLEAWNTGEEFANLPALDPKIPIPAEPDSTDDPMKKRV 762
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
W V+ + E HS RC + +L +AR +D+ FY+PHN+DFRGRAYPM YLNH+
Sbjct: 763 WLRSVKAAENEKSGLHSVRCFMNFQLEIARAFRDQT-FYFPHNIDFRGRAYPMPTYLNHM 821
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
G+D RG+L FA+G+ LG+ GL WLK+ L+N+Y G DK S + R F N+L++IFDSA
Sbjct: 822 GADHMRGLLLFAKGKPLGEKGLAWLKVQLSNVY--GFDKASLQEREDFATNNLENIFDSA 879
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALG 744
D PL G+RWWL+AEDP+QCL C L AL S P ++SH+PVHQDG+CNGLQHYAALG
Sbjct: 880 DNPLTGKRWWLQAEDPWQCLGACFELKAALSSPDPAAYVSHLPVHQDGTCNGLQHYAALG 939
Query: 745 RDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKL 804
DT GA VNL+ E+PADVY+ +A ++Q + +++ A + AK + +++RK+
Sbjct: 940 GDTWGAQQVNLLPGERPADVYAAVAQ----LVQEEVKQELAEGNEF--AKAVDGKINRKV 993
Query: 805 VKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC---YAAKVTLTALGEMFQ 861
VKQTVMT+VYGVT++GA+ Q++++L +E+ ++ Y A T L MF+
Sbjct: 994 VKQTVMTNVYGVTFVGAKKQVQKQLDSIYPNIEQETGLSSTVLASYLAGKVFTGLSTMFR 1053
Query: 862 AARGIMSWLGECAKIIASENQP-------------------------------------V 884
A I +WLGE + P +
Sbjct: 1054 GAHDIQNWLGEIGGRVCRALTPEQIDRLAGGSTEEAKTKKASKSKADIEEEMNGYFRNTL 1113
Query: 885 RWTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGS 942
WTTPL +PVVQPYRK G + T LQ ILT + V ++Q AFPPNF+HSLD S
Sbjct: 1114 VWTTPLRMPVVQPYRKSGTRMISTCLQDLILTNLDRDDPVNRRKQLQAFPPNFIHSLDAS 1173
Query: 943 HMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKS 1002
HMM++A+ C GLTFA VHDS+WTHA DVD+MN ++R+ F+ +++ + L F+
Sbjct: 1174 HMMLSALECNAIGLTFAAVHDSFWTHAADVDDMNAVIRDSFIRIHQEDVIGRLKAEFEAR 1233
Query: 1003 F 1003
+
Sbjct: 1234 Y 1234
>gi|410921290|ref|XP_003974116.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Takifugu rubripes]
Length = 1102
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 276/695 (39%), Positives = 400/695 (57%), Gaps = 67/695 (9%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W ++G+ +++++ + I S D + P H T +++ G
Sbjct: 435 WPYIVTLELGTYMVDMMVKNLKINSNILN-PDQDRKLIPVLYHMY------TFRSTRQIG 487
Query: 436 VIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAK 490
I+ +P +L +++ A + + MPML PP+ W+ + GA+ P+ +MRT GA
Sbjct: 488 FIKPHP-ILSQMQQDATETKLTFDSYVMPMLCPPMPWSSVNFGAYLLTPTKLMRTVEGAM 546
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL 550
Q +++ + L PV ++L+ LGN W++N VL ++ I++ G ++ D+P
Sbjct: 547 QHEMLLEKC--QNLHPVLDSLNQLGNCAWKINKPVLDIIISIFNDRGS-----EKLDIPP 599
Query: 551 P--EKP------------ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
P E P ++A L++ +V + KK+ E HS R D KLS+A +
Sbjct: 600 PLSEAPTIPYFNPNDPNINASEKALLKR---QVMSAKKKYGEMHSLRMDALYKLSIANHV 656
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+DE F++PHN+DFRGR YP PY NHLGSD+ R L FAEG+ LG GL WLKIHL NL
Sbjct: 657 RDE-IFWFPHNMDFRGRTYPCPPYFNHLGSDVTRATLLFAEGKPLGTKGLDWLKIHLVNL 715
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
G + S + RL + ++DIFDSAD PL G++WW+ A++P+Q L+ C+ + A+RS
Sbjct: 716 -TGLKKRSSLQERLEYANTIMEDIFDSADNPLTGKKWWMNADEPWQTLSCCMEIANAVRS 774
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
FISH PVHQDGSCNGLQHYAALGRD +GA +VNL+ E P DVYS +A +V +
Sbjct: 775 PDSAQFISHFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCELPQDVYSSVAQQVEELR 834
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
RDA+ + A++L + RK+VKQTVMT VYGVT G R QI++RLKE
Sbjct: 835 MRDAKSGMKI------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDEFP 888
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
+E ++ AS Y ++ AL EMF R I WL E A++I+ V W TPLGLP++Q
Sbjct: 889 KE-HVWDASHYLVRLVFNALKEMFTGTREIQDWLTESARLISKSGHTVEWVTPLGLPIIQ 947
Query: 897 PYRKLGRHTVKTSLQILTLQ---RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
PY + +K+ LQ ++++ EK +Q+ AFPPNF+HSLD +HMMMTA+ C
Sbjct: 948 PYHRTRNQVLKSILQYISVKINHDTNEKPDTVKQKNAFPPNFIHSLDSTHMMMTALGCYS 1007
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN----LLDSFQKSFP----- 1004
AGLT+ VHD +WTHA VD MN++ RE+FV L+ PI + LL+ + S P
Sbjct: 1008 AGLTYVSVHDCFWTHALTVDTMNKVCREQFVALHSQPILQELSNFLLEKYCSSLPSDTRT 1067
Query: 1005 ---------KLVFPPLPERGDFDLREVLGSPYFFN 1030
+L+ +P+ GDFDL+ V S YFF+
Sbjct: 1068 KKYQEYRKLRLLLANVPQTGDFDLQRVKESTYFFS 1102
>gi|326678540|ref|XP_685138.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Danio rerio]
Length = 1248
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 287/696 (41%), Positives = 398/696 (57%), Gaps = 59/696 (8%)
Query: 372 DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGS 431
D PW ++GS +++L+ IQS A + P H T +
Sbjct: 575 DDTPWPMILMVQLGSFLVDLMVHELKIQSNILNPA-LEKKLIPILYHMY------TFRSN 627
Query: 432 KKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMR-T 486
K G I+ +P++ + L R A + + MPML PPV WT GA+ P+ +MR +
Sbjct: 628 HKIGFIKPHPILTRIL-REATETKLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLMRAS 686
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
GA Q + +++T ++ L V ++L+ +G+ W++N +L ++ I++ G D+
Sbjct: 687 DGAMQHQLLLEKTQEEDLHAVLDSLNQVGSCPWKINKPLLDIIISIFNDKGS-----DKL 741
Query: 547 DVPLP--EKPETE-------DEAQLRKWQWKVRNVK--KENRERHSQRCDIELKLSVARK 595
+P P E PE Q+ K K +K K E HS R D KLS+A
Sbjct: 742 SIPPPLSEAPEIPRFNPHDPSYTQVEKAFMKREGIKAKKVVAEMHSLRMDALYKLSIANH 801
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
++D+ F++PHN+DFRGR YP+ PY NHLGSD+ R +L FAEGR LG GL WLKIHL N
Sbjct: 802 VRDK-IFWFPHNMDFRGRTYPLPPYFNHLGSDVTRALLLFAEGRPLGPKGLDWLKIHLVN 860
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
L G + S +GRL + E+ ++DI DSAD PL+GR+WW+ A++P+Q LA C+ + A R
Sbjct: 861 L-TGLKKQSSLDGRLEYAESIMEDILDSADHPLDGRKWWMNADEPWQALACCMEIANASR 919
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
S FIS+ PVHQDGSCNGLQHYAALGRD +GA +VNL+ P DVYSG+A +V
Sbjct: 920 SPDHHKFISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCALPQDVYSGVAKQVEEF 979
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
RDA+R + A++L + RK+VKQTVMT VYGVT G R QI++RLKE
Sbjct: 980 RVRDAERGLKI------AQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDD- 1032
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
+ ++ AS Y +L EMF R I WL E A++IA + V W TPLGLP++
Sbjct: 1033 FPKDYVWDASHYLVVQVFNSLKEMFTGTREIQEWLTESARLIAKSGRTVEWVTPLGLPII 1092
Query: 896 QPYRKLGRHTVKTSLQILTL---QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
QPY ++ +K ++Q L + EK +Q+ AFPPNF+HSLD +HMM+T++ C
Sbjct: 1093 QPYHRIRNQILKGNIQNLNIHISHDANEKPDSMKQKNAFPPNFIHSLDSTHMMLTSLHCH 1152
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN----LLDSFQKSFP---- 1004
+AGLTF VHD YWTHA VD MNR+ RE+FV L+ PI E LL + + P
Sbjct: 1153 RAGLTFVSVHDCYWTHAVTVDIMNRVCREQFVALHSQPILEELSWFLLQKYSRRPPVGSK 1212
Query: 1005 --KL--------VFPPLPERGDFDLREVLGSPYFFN 1030
KL V +P+ GDFDL +V S YFF+
Sbjct: 1213 PKKLLEYYTLMKVLSSVPQTGDFDLEKVKDSVYFFS 1248
>gi|294656558|ref|XP_002770286.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
gi|199431562|emb|CAR65641.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
Length = 1312
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 313/907 (34%), Positives = 466/907 (51%), Gaps = 117/907 (12%)
Query: 161 MKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCE 220
+K +EQRE N G+ R L++R V E W+ +E+ ++ +
Sbjct: 357 LKTDEQREKFN-------EALDLFNEGRQRQLELRGVDGAKEKWK---HEFEDM-----Q 401
Query: 221 QKLAPNLPYMKSL---FLGWFEPLRDAIAKEQERCR------------------MAKHKV 259
++ A NL KSL W+ L + +E +C+ + K +
Sbjct: 402 KRGAINL--HKSLNVQLFKWYSDLLPYVEEEVNQCKKILDGEISLDNVKPDAKNLMKDRA 459
Query: 260 AYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEK 319
YAPY +P M VIT+ +L+ L TGG R +A +G A+E E +
Sbjct: 460 YYAPYLTLIPPKKMCVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYK------- 512
Query: 320 TKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF--KPWG 377
N + E L KK+ + +KL RR QD W
Sbjct: 513 ----------------SQNLMKAEGRSLSKKLKTTSQWKKLLRQRRDYNKQDPIANNEWD 556
Query: 378 QDARAKVGSRVIELLTQTAYI--QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
AKVGS + LL A + + + PAF H + + ++ G
Sbjct: 557 YPIYAKVGSVLTSLLIHVAKVPVKGTDPTTGKEVKGMQPAFHHTYQYLQ------GQRLG 610
Query: 436 VIECNPLVLKGLE-RTARHMVIPYM-PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
V++ + +++ L + V P M PMLVPP WT Y+ G + F + ++R + +
Sbjct: 611 VLKVHKSLVRQLAGNVLGNSVQPQMLPMLVPPRPWTSYNDGGYLFSQNSLVRIKDSAETN 670
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL---VDRNDVP- 549
+K +++ L+ LG+T W VN V +++ + W+ G + D+ V+ ++P
Sbjct: 671 AYLKAASDLDNLEIYDGLNVLGDTAWTVNRNVFNIISKFWNTGEKFLDIPPIVEEPELPK 730
Query: 550 -LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
LP E ++A+ +Q KVR E SQRCD KL +AR E+ ++PHNV
Sbjct: 731 QLPMNAEPFEKAE---YQRKVRKAMNEAASARSQRCDTNYKLEIARGFLGEK-LFFPHNV 786
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGRAYP+ +LNHLG+D+ R + F EGR +G GL+WLKIHLAN+Y G+DK
Sbjct: 787 DFRGRAYPLSAHLNHLGNDMTRSLFLFWEGREVGDEGLNWLKIHLANVY--GIDKAPLNE 844
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
R+ F +++L++I + A P+ G WW K E P+Q L+VC L EA + P F+SHIPV
Sbjct: 845 RIQFVDDNLENILECARNPINGSGWWKKGEKPWQVLSVCFELNEAFQLDDPTKFVSHIPV 904
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL--VIIQRDAQRDPAV 786
HQDG+CNGLQHYAALG D GA VNL+ +KP DVY+ +A V V + +A A+
Sbjct: 905 HQDGTCNGLQHYAALGGDIEGARQVNLIPADKPQDVYTFVAGLVQKRVDAEAEAGNKYAI 964
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
F L ++ RK+VKQTVMT+VYGVT++GA QI++++ + + +
Sbjct: 965 F--------LQDKITRKVVKQTVMTNVYGVTFVGAVLQIQKQIDHYFDKNDTENVDEYAR 1016
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIA-------------SENQP-----VRWTT 888
Y ++ E+F+ A I WLGE AK I+ + N+P V WTT
Sbjct: 1017 YLTAHVFASIRELFEGAHLIQDWLGESAKRISKSVRIDYEEKSSKNSNKPSHLSSVIWTT 1076
Query: 889 PLGLPVVQPYRKLGRHTVKTSLQILTLQRE--TEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
PLGLP VQPYR + + T+LQ + + +V ++Q+ AFPPN+VHSLD +HM+M
Sbjct: 1077 PLGLPCVQPYRVTKKQIISTNLQDIVISDPFGASQVDARKQQAAFPPNYVHSLDATHMLM 1136
Query: 947 TAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQ---KSF 1003
TA AC ++GL+FA VHDSYWTHACDV+ MN +RE+FV+L+ + + D F+ K F
Sbjct: 1137 TAKACAESGLSFASVHDSYWTHACDVNTMNSHIREQFVKLHGENLIVKIRDEFERRYKGF 1196
Query: 1004 PKLVFPP 1010
+++ P
Sbjct: 1197 LQVIIIP 1203
>gi|438813|gb|AAA33587.1| mitochondrial RNA polymerase [Neurospora crassa]
gi|1589165|prf||2210334A cyt-5 gene
Length = 1422
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 313/894 (35%), Positives = 462/894 (51%), Gaps = 114/894 (12%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWFEPLRD---AIAKEQE 250
Q K+E + + + +RE + + L +L P + S W + L + E E
Sbjct: 364 QSKLEKDCVDASLARWREENESLQKMGLNTSLDTPSLNSRLYQWQKDLETRLRTMLVEVE 423
Query: 251 RCRMAKHK-------VAYAPYFDQL-PADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
+ M K Y P+ Q P + AV + L L M H + +
Sbjct: 424 KSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMRS--HKGSTIASLITH 481
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
I E+++R+ K K+N K K + S LR K + A
Sbjct: 482 IAKFAEEDIRVQKAEALISKRNLRKAKSKQHNPRS--------VLRFKNSTASAGSSDMA 533
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTH 418
V + D + W R KVG+ ++ L TA I + P + PAF+H
Sbjct: 534 DSNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLITQNQ--PAFSH 591
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERT------ARHMVIPYMPMLVPPVKWTGYD 472
++ KG KK G I N V++ L R ARH+ PM+ PP W ++
Sbjct: 592 VMQL----RKG--KKIGTIIPNKAVVELLVREPVPDFLARHL-----PMVTPPDPWVSFE 640
Query: 473 KGAHFFLPSYVMR-THGAKQQR-DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
KGA+ + V+R +G ++QR T + ++ VF+ LD LG T W++N+ V V+
Sbjct: 641 KGAYLETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVML 700
Query: 531 RIWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIE 587
+W+ G ++A++ + D+P PE TED R W +++ ++ E SQRC +
Sbjct: 701 DVWNSGKQVANIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGFDSQRCFMN 759
Query: 588 LKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH 647
+L +AR +D+ FY+PHNVDFRGRAYP+ PYLNH+G+D RG++ FA+G+ LG+SGL
Sbjct: 760 FQLEIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLR 818
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC 707
WLK+HLAN+Y G DK S + R F + ++++I DS + PL G +WWL+AEDP+QCLA C
Sbjct: 819 WLKVHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATC 876
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
L AL P ++SH+P+HQDG+CNGLQHYAALG DT GA VNLV ++PADVYS
Sbjct: 877 FELAAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSA 936
Query: 768 IAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR 827
+A V+ I+ D +D AK + ++ RK+VKQTVMT+VYGVTY+GAR Q+ +
Sbjct: 937 VAKLVIKGIEDDLAKDNEF------AKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLK 990
Query: 828 RLKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECAKIIA------ 878
+++ + A+ A+ VT A+ MF+ A I +WLGE +
Sbjct: 991 QIEAAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPE 1050
Query: 879 -------SENQP-----------------------------------VRWTTPLGLPVVQ 896
SE P + WTTPL +PVVQ
Sbjct: 1051 QLDEFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQ 1110
Query: 897 PYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
PYRK G TV T +Q ++T+ ++ V ++Q AFPPNF+HSLD SHM+++A+ C +
Sbjct: 1111 PYRKHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDEL 1170
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
GLTFA VHDS+WTHA D+D MN +LR+ F+ ++ + L FQ + ++
Sbjct: 1171 GLTFAAVHDSFWTHASDIDSMNAVLRDAFIRIHSEDVIGRLAAEFQARYKNSLY 1224
Score = 42.7 bits (99), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1006 LVFPPLPERGDFDLREVLGSPYFFN 1030
LVFPP+PE+GDFD+R + S YFF+
Sbjct: 1398 LVFPPIPEKGDFDVRSLKDSTYFFS 1422
>gi|225558540|gb|EEH06824.1| mitochondrial RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1397
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 309/878 (35%), Positives = 454/878 (51%), Gaps = 103/878 (11%)
Query: 193 KMRQVKIETEAWEKAANEYR---ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI---- 245
+MRQ ++E++ E A ++ E+L + + P+ P M + W L I
Sbjct: 364 QMRQRRLESDCVESAIARWKKESEMLHRVGVNPI-PSKP-MGAFLYDWHTQLMSRINEEL 421
Query: 246 ---AKEQERCRMA---KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 299
+ +++ RM+ +V +PY + D +A +T+ L G ++
Sbjct: 422 ERIEESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTGL 481
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
+G A+ E + E +++ + + +KL K T +K +
Sbjct: 482 VMYVGKAVYDEYLAMQLREL-----------EKKSKPTKKTSALIDKLVHKGT---RKAQ 527
Query: 360 LPAVRRIVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFT 417
+ R I + + +P W +AK+G+ + +L TA + P P
Sbjct: 528 VQWRRIIARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKD---------PKTN 578
Query: 418 H-------ALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWT 469
H A R V + +G + G + N +++ L R ++ ++PM+ PP WT
Sbjct: 579 HQKQTDQAAFRRVYQLERGF--RVGYVHANDYIVEKLRREPLGELLAKHLPMVCPPRPWT 636
Query: 470 GYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLS 527
G PS VMR G Q V+ + L+ VF L LG T W++N VL+
Sbjct: 637 SARGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLN 696
Query: 528 VLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
V+ W+ G +A+L N ++ PEKP+T+D L+ + + HSQRC
Sbjct: 697 VMLEAWNSGEEIANLAPENPNIIEPEKPDTDDRDILKDYYRAKMHATNARTGYHSQRCFQ 756
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
+L +AR ++E FY PHN+DFRGRAYPM PY N +G+D CRG+L F++GR LG SGL
Sbjct: 757 NFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGL 815
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
WLKIHLAN++ G DK S + R F +HL+DI DSA L+G+RWWL A DPFQCLA
Sbjct: 816 RWLKIHLANVF--GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAA 873
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
CI LT A+ P F+SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+
Sbjct: 874 CIELTNAMALEDPTKFVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYT 933
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
G+A V IQ+DA + AKLL ++ RK+VKQTVMT+VYGVT++GA Q++
Sbjct: 934 GVAEHVKQSIQKDAAKGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVR 987
Query: 827 RRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP-- 883
++L + + + + G + Y A+ ALG MF A I WLG+CA I+ P
Sbjct: 988 KQLVDHYPDLLHSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSPEQ 1047
Query: 884 ------------------------------------VRWTTPLGLPVVQPYRKLGRHTVK 907
V WTTPL LPV QPYR V
Sbjct: 1048 IEALSDERNLKVVGRFQGAKKLAKNIKDPKSHFKSTVVWTTPLKLPVAQPYRDAACVKVF 1107
Query: 908 TSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
+ LQ L+++ + ++ V ++Q AFPPNFVHSLD +HM ++AV C + GL+F+ VHDS+
Sbjct: 1108 SDLQQLSIRNPQASDVVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAVHDSF 1167
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
WTHA DVD MNR+LR+ FV ++ I + L F+ +
Sbjct: 1168 WTHAADVDTMNRVLRDAFVRMHSEDIIQRLASEFKTRY 1205
>gi|336270782|ref|XP_003350150.1| hypothetical protein SMAC_01041 [Sordaria macrospora k-hell]
gi|380095545|emb|CCC07018.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1407
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 304/895 (33%), Positives = 464/895 (51%), Gaps = 115/895 (12%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWFEPLR-------DAIA 246
Q K+E + + + +RE + + L +L P + S W + L + +
Sbjct: 355 QSKLEKDCIDASLARWREENESLQKMGLNTSLDTPSLNSRLYQWQKDLEARLLTMLEEVE 414
Query: 247 KEQERCRMAKH---KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ ++ R K + Y P+ Q + +A +T+ + L GG H A + I
Sbjct: 415 ESEKATRKTKEDLDRCIYGPFLRQSNPERLAAVTIISTLSSLAMGGAHKGATIASLITHI 474
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
E+++R+ K E KN + + ++ + + + D+ + V
Sbjct: 475 AKFAEEDIRVQK-AEAMLSKNTLRKSKVKQYNPRSFLRFTNTTASAGSGDMADSNTVDVV 533
Query: 364 RRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTHA 419
+ + W R KVG+ ++ L TA I + PA + PAF+H
Sbjct: 534 M-------EEEAWTTLIRTKVGAALLSALLDTAKIKLVREDPATKTLVTQNQ--PAFSHV 584
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERT------ARHMVIPYMPMLVPPVKWTGYDK 473
++ KK G I N V+ L R ARH+ PM+ P W +++
Sbjct: 585 MQLRR------GKKVGTIIPNKAVVDLLVREPVPDFLARHL-----PMVTAPDPWVSFER 633
Query: 474 GAHFFLPSYVMR-THGAKQQR-DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
GA+ + V+R +G ++Q+ T + ++ +F+ LD LG T W++N+ V V+
Sbjct: 634 GAYLETKTPVLRLKNGEREQKLYTEAAIARGDMDQIFKGLDVLGKTGWKINHPVFKVMLE 693
Query: 532 IWSCGGRLADLVDRNDVPLPEKP----ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIE 587
+W+ G ++A++ N P+ E+P TED R W ++ ++ E HSQRC +
Sbjct: 694 VWNSGEQVANIPPLN--PVFEQPAEPASTEDPTIKRSWLKALKAIENERSGLHSQRCFMN 751
Query: 588 LKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH 647
+L +AR +D+ FY+PHNVDFRGRAYP+ PYLNH+G+D RG++ F++G+ LG+SGL
Sbjct: 752 FQLEIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHLRGLMLFSKGKPLGESGLR 810
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC 707
WLK+HLANLY G DK S + R F E +++++ +SA PL G RWWLKAEDP+QCLA C
Sbjct: 811 WLKVHLANLY--GFDKASLQERQEFAEENIENVRESARNPLNGNRWWLKAEDPWQCLATC 868
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
L EAL P ++SH+PVHQDG+CNGLQHYAALG DT GA VNLV E+PADVYS
Sbjct: 869 FELAEALELEDPTKYVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLVPGERPADVYSA 928
Query: 768 IAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR 827
+A V+ I D +D AK + ++ RK+VKQTVMT+VYGVTY+GA+ Q+ +
Sbjct: 929 VAKLVIKGIDEDLAKDNEF------AKAMHGKITRKVVKQTVMTNVYGVTYVGAKKQVLK 982
Query: 828 RLKERGAP--MEEA--ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA--------- 874
++ + P M E E A+ Y + A+ MF+ A I +WLGE
Sbjct: 983 QI-DAAYPNLMTETGIEPPLAAAYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTP 1041
Query: 875 ---------------------------------------KIIASENQPVRWTTPLGLPVV 895
+I+ + + WTTPL +PVV
Sbjct: 1042 EQLDEFERSERFPQGDGTATDGNQTLAAAPKKSASHKNDEILNNFQSTIIWTTPLRMPVV 1101
Query: 896 QPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
QPYR+ G TV T +Q ++T+ ++ V ++Q AFPPNF+HSLD SHM+++A+ C +
Sbjct: 1102 QPYRRHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDE 1161
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
GLTFA VHDS+WTHA DVD MN ++R+ F+ ++ + L FQ + ++
Sbjct: 1162 LGLTFAAVHDSFWTHASDVDTMNTVIRDAFIRIHSEDVIGRLAAEFQARYKNSIY 1216
>gi|310796543|gb|EFQ32004.1| DNA-dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1395
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 280/684 (40%), Positives = 394/684 (57%), Gaps = 75/684 (10%)
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSK 432
PW +AKVG+ ++ L +TA I+ + + PAF+H VS+ +G K
Sbjct: 539 PWPPAVKAKVGAALLSALIETAKIKVVKEHPETKTLISQFQPAFSH----VSQLKRG--K 592
Query: 433 KYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYV----MRTH 487
K G++ N ++ ++R + + ++PM+V P W +DKG FL S ++
Sbjct: 593 KIGMMLLNKELVNLMKREPQGDYLAKHLPMVVEPEPWQAFDKGG--FLESRANLVRIKQG 650
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN- 546
G Q+ + + ++ VF+ LD LG T WRVN VL+V+ W+ G LA+L N
Sbjct: 651 GKDQKLYSEAAIARGDMDQVFKGLDVLGKTAWRVNTPVLNVMLEAWNTGEALANLPALNP 710
Query: 547 DVPLPEKPETEDEAQL-RKWQWKVRNVKKENRER---HSQRCDIELKLSVARKMKDEEGF 602
D+P+P +PE D+ R W VR VK + ER HS RC + +L +AR +++ F
Sbjct: 711 DIPVPPEPEASDDPMAHRNW---VRAVKAADNERGGLHSVRCFMNFQLEIARAFRNQT-F 766
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
Y+PHN+DFRGRAYP+ YLNH+G+D RGIL FA G+ LG+ GL WLK+HLAN++ G D
Sbjct: 767 YFPHNIDFRGRAYPLPTYLNHMGADHVRGILRFARGKELGEDGLKWLKVHLANVF--GFD 824
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
K S + R +F ++L +IFDSA+KPL+G RWWLKAEDP+QCLAVC L AL S P F
Sbjct: 825 KASLKDRESFAMDNLVNIFDSANKPLDGNRWWLKAEDPWQCLAVCYELKAALESPEPTKF 884
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
+SH+P+HQDG+CNGLQHYAALG D+ GA VNL +KPADVYS +A V I +DA+
Sbjct: 885 VSHLPIHQDGTCNGLQHYAALGGDSWGARQVNLEPGDKPADVYSAVANIVKEHIAKDAEA 944
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
A ++ ++ RK+VKQTVMT+VYGVT+ GA+ Q+ ++L + E F
Sbjct: 945 GNAF------GLVMNGKITRKVVKQTVMTNVYGVTFAGAKKQVCKQLDALYPNLYEESGF 998
Query: 843 GA---SCYAAKVTLTALGEMFQAARGIMSWLGECA------------------------- 874
+ + Y A + AL MF A I WLGE
Sbjct: 999 SSIVLASYVATLVFKALSSMFGGAHDIQHWLGEIGGRVCRALSAEQLERISNDNLLPSPS 1058
Query: 875 -------------KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRET 919
++A + WTTPL +P+ QPYRK G +KTSLQ LT+ +
Sbjct: 1059 KTARAGDKKTTTDDLLAQFRATIVWTTPLRMPIAQPYRKSGTRIIKTSLQELSLTVPERS 1118
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRIL 979
+ V K+Q AFPPNF+HSLD +HM+++A+ C + GL FA VHDS+WTHA DV+ MNR+L
Sbjct: 1119 DPVHRKKQLQAFPPNFIHSLDATHMLLSALECHELGLDFAAVHDSFWTHAADVNVMNRVL 1178
Query: 980 REKFVELYEMPIFENLLDSFQKSF 1003
R+ FV ++E + L F+ +
Sbjct: 1179 RDAFVRIHEEDVIGRLSAEFEARY 1202
>gi|398392013|ref|XP_003849466.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
gi|339469343|gb|EGP84442.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
Length = 1299
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 306/897 (34%), Positives = 460/897 (51%), Gaps = 117/897 (13%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
L+ V++ E W+KA E R+ + Q M S+ W + L A+ +E E
Sbjct: 255 LERTSVEVAVERWKKADEELRKKGISTAMQTKD-----MSSMMWQWHQQLLPALKQELEE 309
Query: 252 CR--MAK-----HKVAYAPYFDQLPADMMAVITMHKLMGLL------MTGGEHGRARVVQ 298
+ MA + Y P+ + LP + +A T+ M + +G ++
Sbjct: 310 VQKEMADPGREHDRHLYGPFLELLPLEHIAATTIMVAMSSIAHGKKDTSGQYETDVKLSH 369
Query: 299 AACIIGDAIEQEVRIHKFLEKTKK-----------KNETKNKEDEEGDESNTVTTEQEKL 347
+G+ IE + + K ++++ K N E D T ++
Sbjct: 370 LVSALGNTIESDCKAEKAGSQSRRGAKKARSAGRLKKSAANPALEAPDADKTSASK---- 425
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QL 405
K K P+ + ++ + W + K+G+ +I L +TA + + +
Sbjct: 426 --------GKPKKPSNKELLAELE----WSNPVKFKLGAMLISKLVETAKLACRREHPRT 473
Query: 406 ADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLE-RTARHMVIPYMPMLVP 464
+ + PA H ++ + K+ G I N ++K L ++ MPM+V
Sbjct: 474 KEMIEQMQPALLHQMKWIR------GKRQGTIAPNVELVKKLSSEPIPALIAKRMPMVVR 527
Query: 465 PVKWTGYDKGAHFFLPSYVMRTH-GAKQQRD----TVKRTPKKQLEPVFEALDTLGNTKW 519
P W G++ G + PS ++R G KQ + +R K LE V+ L L + W
Sbjct: 528 PKPWKGWEDGGYLRFPSPILRLPVGDKQGKSYFLAAAERNEGKDLETVYRGLTALSSVPW 587
Query: 520 RVNNRVLSVLDRIWSCGGRLADLVD-RNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRE 578
RV+ V V W+ G +A+ R LP +PE+ D A+ RKW + ++ +
Sbjct: 588 RVHPGVFKVQLDAWNSGEEIANFAPLRPATDLPPEPESTDFAERRKWLAQCHEIRNKATG 647
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
HS+RC +L +AR + +E Y+PHN+DFRGRAYP+ PYLNH+G+D RG+L FA+G
Sbjct: 648 LHSKRCFQNFQLEIARTIVNET-IYFPHNLDFRGRAYPIPPYLNHMGADNVRGLLVFADG 706
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAE 698
+ LG+ GL WLK HLA + G DK S + RL FTE HLDDI+DS PL GRRWWL+A+
Sbjct: 707 KELGEKGLRWLKTHLATV--AGHDKASMQERLDFTEAHLDDIYDSVRNPLTGRRWWLEAD 764
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
D +Q LA C LT AL S P F+SH+PV QDG+CNGLQHYAALG D GAA VNL
Sbjct: 765 DAWQTLAACFELTAALDSPDPTKFVSHLPVQQDGTCNGLQHYAALGGDRAGAAQVNLEPS 824
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
++PADVY+ +A V + +DA L A++L ++ RK VKQ VMT+VYGVT+
Sbjct: 825 DRPADVYTAVADAVKAEVDKDAAE------GNLVAQVLQGRLTRKCVKQPVMTNVYGVTF 878
Query: 819 IGARDQIKRRLK----ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
GA++Q++++L+ E G P + S Y A +LG+MF+ A+ I +WLG+CA
Sbjct: 879 YGAKEQVRKQLEVLFPEVG-PYGPVNMGNMSHYVATKIFKSLGDMFKGAQSIQAWLGQCA 937
Query: 875 KIIASE-----------------------------------------NQPVRWTTPLGLP 893
I++ Q V WTTPL LP
Sbjct: 938 DRISTSLTPAQVEELKEETSTAAPTPAPSNPVLDTLASDVNKTKPLFKQTVVWTTPLKLP 997
Query: 894 VVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 951
VVQPYR TV T++Q + +Q + + V ++Q AFPPNF+HSLD +HM+++A+ C
Sbjct: 998 VVQPYRASKPRTVSTTMQTIAIQEQHVWDPVSKRKQLQAFPPNFIHSLDATHMLLSALKC 1057
Query: 952 RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+ G+TFA +HDS+WTHACDVD+M+R+LR+ FV ++ I L + FQ + ++
Sbjct: 1058 TEEGMTFASIHDSFWTHACDVDDMSRVLRDAFVTMHREDIVGRLREEFQARYKGFMY 1114
>gi|410209414|gb|JAA01926.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
gi|410265918|gb|JAA20925.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
gi|410349645|gb|JAA41426.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
Length = 1230
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 282/687 (41%), Positives = 398/687 (57%), Gaps = 51/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ +V + +K RE HS R + +LS+A+ ++D
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRR---EVVHCQKVAREMHSLRAEALYRLSLAQHLRDR 792
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 793 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 850
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 851 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 910
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 911 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 970
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 971 AQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 1024
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 1025 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 1083
Query: 900 KLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 1084 LDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1143
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----------- 1004
LTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 1144 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQ 1203
Query: 1005 -KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1204 LKETLQAVPKPGAFDLEQVKRSTYFFS 1230
>gi|347948643|pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/687 (40%), Positives = 398/687 (57%), Gaps = 51/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 469 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 519
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 520 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 579
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 580 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 639
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ ++ + +K RE HS R + +LS+A+ ++D
Sbjct: 640 SEAPQPPEAHLPHSAAPARKAELRR---ELAHCQKVAREMHSLRAEALYRLSLAQHLRDR 696
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 697 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 754
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 755 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 814
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 815 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 874
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 875 AQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 928
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 929 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 987
Query: 900 KLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 988 LDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1047
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----------- 1004
LTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 1048 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQ 1107
Query: 1005 -KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1108 LKETLQAVPKPGAFDLEQVKRSTYFFS 1134
>gi|71052166|gb|AAH98387.1| Polymerase (RNA) mitochondrial (DNA directed) [Homo sapiens]
Length = 1230
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/687 (40%), Positives = 399/687 (58%), Gaps = 51/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHHSS-RLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ ++ + +K RE HS R + +LS+A+ ++D
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRR---ELAHCQKVAREMHSLRAEALYRLSLAQHLRDR 792
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 793 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 850
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 851 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 910
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 911 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 970
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 971 AQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 1024
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 1025 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 1083
Query: 900 KLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 1084 LDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1143
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----------- 1004
LTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 1144 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQ 1203
Query: 1005 -KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1204 LKETLQAVPKPGAFDLEQVKRSTYFFS 1230
>gi|62089426|dbj|BAD93157.1| DNA-directed RNA polymerase variant [Homo sapiens]
Length = 1072
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/687 (40%), Positives = 398/687 (57%), Gaps = 51/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 407 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 457
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 458 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 517
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 518 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 577
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ ++ + +K RE HS R + +LS+A+ ++D
Sbjct: 578 SEAPQPPEAHLPHSAAPARKAELRR---ELAHCQKVAREMHSLRAEALYRLSLAQHLRDR 634
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 635 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 692
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 693 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 752
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 753 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 812
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 813 AQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 866
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 867 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 925
Query: 900 KLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 926 LDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 985
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----------- 1004
LTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 986 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQ 1045
Query: 1005 -KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1046 LKETLQAVPKPGAFDLEQVKRSTYFFS 1072
>gi|110618253|ref|NP_005026.3| DNA-directed RNA polymerase, mitochondrial precursor [Homo sapiens]
gi|50403691|sp|O00411.2|RPOM_HUMAN RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|2979529|gb|AAC06147.1| RPOM_HUMAN [Homo sapiens]
Length = 1230
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/687 (40%), Positives = 398/687 (57%), Gaps = 51/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ ++ + +K RE HS R + +LS+A+ ++D
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRR---ELAHCQKVAREMHSLRAEALYRLSLAQHLRDR 792
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 793 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 850
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 851 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 910
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 911 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 970
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 971 AQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 1024
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 1025 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 1083
Query: 900 KLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 1084 LDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1143
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----------- 1004
LTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 1144 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQ 1203
Query: 1005 -KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1204 LKETLQAVPKPGAFDLEQVKRSTYFFS 1230
>gi|354480822|ref|XP_003502602.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Cricetulus
griseus]
Length = 1202
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/691 (40%), Positives = 395/691 (57%), Gaps = 55/691 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPAD-QLADAPPDIFPAFTHALRTVSKETKGGSK 432
+PW +G ++ E+L Q +Q P + A + P H S +
Sbjct: 533 QPWSLTVLLHLGKQLAEMLVQA--VQMPRNLSTPQASRHLIPVLYHVYSFRS------YR 584
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P K LE A +I +PML PP+ WT GA+ + +MR T G
Sbjct: 585 QIGILKPHPAFSKLLETAAEPTLILETTEVPMLCPPLPWTTPHTGAYLLSSTKLMRATEG 644
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + ++R QL +AL LGN WRVN R+L ++ +I+ G RL R+
Sbjct: 645 TTQHQHLLERCAPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCTRLGVPPPRS 704
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +A+LRK ++ K RE HS R + +LS+A+ +++
Sbjct: 705 EAPQPAQLRLPPGATPLHKAELRK---ELSRCLKIAREMHSLRIEALYRLSLAQHLRNRV 761
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP PY NHLGSDL R +LEFAEGR LG GL W+KIHL NL G
Sbjct: 762 -FWLPHNMDFRGRTYPCPPYFNHLGSDLARALLEFAEGRPLGPRGLDWIKIHLVNL-TGL 819
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S RL F + +++I DSAD P+ GR+WW++A++P+Q LA CI + A+RS
Sbjct: 820 RKRDSLRMRLRFADEVMEEILDSADNPMTGRKWWMEADEPWQTLACCIEVARAVRSPDAA 879
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
++SH+PVHQDGSCNGLQHYAALGRD+ GAA+VNL+ + P DVY +AA+V + QRDA
Sbjct: 880 AYVSHLPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSDLPQDVYREVAAQVEELRQRDA 939
Query: 781 QRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
+ D L+ A +L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 940 K-------DGLQVAHVLKGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSNFPQEF 992
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y ++ +L EMF + R I WL E A +I+ PV W TPLG+PV+QPY
Sbjct: 993 -VWEASHYLVRLVFKSLQEMFSSTRAIQHWLTESANLISHSGWPVEWVTPLGIPVIQPYH 1051
Query: 900 KLGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
+ + VK +Q +T+ T+K +Q+ FPPNF+HSLD +HMM+TA+ C + GL
Sbjct: 1052 REAKVQVKGGIQSITMTSSMDITQKPNTLKQKNGFPPNFIHSLDSAHMMLTALHCYRKGL 1111
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL---------- 1006
TF VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F +
Sbjct: 1112 TFVSVHDCFWTHAADIPVMNEVCREQFVRLHSQPILEDLAKFLEKRFCSVSSSQKPSELA 1171
Query: 1007 -------VFPPLPERGDFDLREVLGSPYFFN 1030
LP+ G FDL +V+ S YFF+
Sbjct: 1172 LATKLQKTLQSLPKTGTFDLSQVMKSTYFFS 1202
>gi|119581582|gb|EAW61178.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Homo
sapiens]
Length = 1245
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/687 (40%), Positives = 398/687 (57%), Gaps = 51/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 580 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 630
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 631 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 690
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 691 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 750
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ ++ + +K RE HS R + +LS+A+ ++D
Sbjct: 751 SEAPQPPEAHLPHSAAPARKAELRR---ELAHCQKVAREMHSLRAEALYRLSLAQHLRDR 807
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 808 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 865
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 866 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 925
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 926 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 985
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 986 AQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 1039
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 1040 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 1098
Query: 900 KLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 1099 LDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1158
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----------- 1004
LTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 1159 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQ 1218
Query: 1005 -KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1219 LKETLQAVPKPGAFDLEQVKRSTYFFS 1245
>gi|328851510|gb|EGG00664.1| hypothetical protein MELLADRAFT_50335 [Melampsora larici-populina
98AG31]
Length = 854
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 324/865 (37%), Positives = 447/865 (51%), Gaps = 136/865 (15%)
Query: 266 DQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQE---VRIHKFLEKTKK 322
+ L A + V + ++ +T G A+ + +G +IE E + E KK
Sbjct: 24 NSLLAKVAVVEVIREMTNSTITDG----AKSIGLFIAMGKSIENEWYAQSVKSIPELNKK 79
Query: 323 KNET-KNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDAR 381
T K+ + E GD + L K V L K++ + Q + W + R
Sbjct: 80 LLHTIKSSQPEVGDVPKS-------LDKIVRQLWKREIGKYAGDLAAVQGEHTDWTINQR 132
Query: 382 AKVGSRVIELLTQTAYIQSPADQLADAPPD--IFPAFTHALRTVSKETKGGSKKYGVIEC 439
AKVG+ +++ L QTA I + PD I+ A ++ G K+ GV +
Sbjct: 133 AKVGAMLMKGLLQTAKITR-----SQVMPDGSIYKEEQPAFYQTTQYFDG--KRVGVTKL 185
Query: 440 NPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 497
N V + L+R ++ + Y+PM+ PP+ WT GA+ + MRT + +Q V
Sbjct: 186 NEAVAERLDRDPANVTLHPRYLPMISPPLPWTSPKNGAYLVHAAPFMRTKDSPEQHLHVM 245
Query: 498 RTPK-KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL--------VDRNDV 548
+ L+ +F+ALD LG T W +N V V+ +W+ G LA + +D +D+
Sbjct: 246 EAHRLNGLDDIFQALDKLGQTAWAINRPVFDVMAVVWNSGKELAGIPVRDPHLNLDVSDL 305
Query: 549 --------PLP----EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
PL E P E E RK + R++ R + QRC + +L +AR
Sbjct: 306 QSELLKNDPLEDGSQESPRMEGE---RKEIY--RSLLATRRSAYGQRCSVNYQLEIARAY 360
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+E FY+PHNVDFRGRAYP+ LNH+G D+ RG+L FAE + LG+ GL WLK+HLAN
Sbjct: 361 LNET-FYFPHNVDFRGRAYPLPANLNHIGDDISRGLLTFAERKELGERGLFWLKVHLAN- 418
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
G DK S + RLAFTE HL DI DSAD PL+G WWLK+EDP+Q LA CI LTEALRS
Sbjct: 419 -KAGYDKASLDERLAFTEGHLKDINDSADHPLDGPGWWLKSEDPWQTLAACIELTEALRS 477
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P + S +PVHQDGSCNGLQHYAALG D G VNL+ +P DVYS +A V ++
Sbjct: 478 DDPTKYKSRLPVHQDGSCNGLQHYAALGGDVEGGREVNLIPGIRPGDVYSKVATEVNKLV 537
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
+DA+ + AK L + RK+VKQTVMT+VYGVT++GAR+QI+R+LK+ G +
Sbjct: 538 NQDAENGHDI------AKALKGHIKRKVVKQTVMTTVYGVTFVGAREQIRRQLKDLGV-I 590
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR----------- 885
L+ ++ Y A + L ++GE+F+ A I WL A+++A P R
Sbjct: 591 PVPNLYISAAYVATLVLRSIGEVFRGAVAIQRWLTYVARLVAKSIPPERASLLMTKVDVP 650
Query: 886 ----------------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM 923
WTTPLGL V QPYR R + T LQ + + E
Sbjct: 651 GQSISANAQKAQDETELMTSMTWTTPLGLVVCQPYRAQNRTQISTVLQTVYIADPFEPAQ 710
Query: 924 V--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
+ Q +AFPPNF+HSLD +HMM+TA+AC+ +TFA VHDSYWTHA DVD MN LRE
Sbjct: 711 ADSRGQASAFPPNFIHSLDATHMMLTALACKD--ITFASVHDSYWTHAADVDVMNVKLRE 768
Query: 982 KFVELYEMPIFENL-----------------------------------LDSFQKSFPKL 1006
FV L+ I ENL + S +K + L
Sbjct: 769 AFVRLHTAKILENLAQETLHRYSGYKIPRSSLSAKMLSDLKYMGVEVDKIMSQEKRYVDL 828
Query: 1007 --VFPPLPERGDFDLREVLGSPYFF 1029
+ PPLP +GD ++ VL S YFF
Sbjct: 829 ASLIPPLPPKGDLEIAAVLKSQYFF 853
>gi|332255805|ref|XP_003277019.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Nomascus
leucogenys]
Length = 1230
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/684 (40%), Positives = 402/684 (58%), Gaps = 45/684 (6%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + S D+L + + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPSSLDKLRRSS-RLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN VL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGPVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
++ P P + P + A+ + + ++ + +K R+ HS R + +LS+A+ ++D F
Sbjct: 736 SEAPQPPEVHLPHSATPARKAELRRELAHCQKVARDMHSLRVEALYRLSLAQHLRDCV-F 794
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
+ PHN+DFRGR YP P+ NHLGSD+ R +L FA+GR LG GL WLKIHL NL G
Sbjct: 795 WLPHNMDFRGRTYPCPPHFNHLGSDVARALLVFAQGRPLGPHGLDWLKIHLVNL-TGFKK 853
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
+ + RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + +A+R+S P +
Sbjct: 854 REPLQKRLAFAEEVMDDILDSADRPLTGRKWWMGAEEPWQTLACCMEVAKAVRASDPAAY 913
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
+SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++DAQR
Sbjct: 914 VSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQR 973
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E ++
Sbjct: 974 GTRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELNDFPQEF-VW 1026
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
AS Y + +L EMF R I WL E A++I+ V W TPLG+P++QPYR
Sbjct: 1027 EASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHTGSVVEWVTPLGVPIIQPYRLES 1086
Query: 903 R-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTF 958
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + GLTF
Sbjct: 1087 KVKQLGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTF 1146
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP------------KL 1006
VHD YWTHA DV MN++ RE+FV L+ PI ++L + K F K
Sbjct: 1147 VSVHDCYWTHAADVSIMNQVCREQFVHLHSEPILQDLSNFLVKRFCSEPRKILEASQLKQ 1206
Query: 1007 VFPPLPERGDFDLREVLGSPYFFN 1030
+P+ G FDL +V S YFF+
Sbjct: 1207 TLQAVPKPGAFDLEQVKHSTYFFS 1230
>gi|395831257|ref|XP_003788721.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Otolemur
garnettii]
Length = 1227
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 280/687 (40%), Positives = 397/687 (57%), Gaps = 52/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ E+L Q +Q P A + P H S +
Sbjct: 563 QPWPVPVLLQLGRQLAEILVQA--VQMPGSLAAPQGSCRLIPVLYHVYSFRS------YR 614
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P ++ L + A + +PML PP+ WT GA P+ +MR G
Sbjct: 615 QIGILKPHPAFVQLLAKAAEPTLTFETVDVPMLCPPLPWTSPHSGAFLLSPTKLMRAVEG 674
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + ++R P +L +AL LGN WRVN RVL ++ ++ G L +
Sbjct: 675 TTQHQRLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFRGKGCSHLGVPPPAS 734
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +A+LR+ ++ K RE HS R D +LS+A+ ++
Sbjct: 735 EAPRPPEGHLPPDAPPARKAELRR---ELARCLKVAREMHSLRADALYRLSLAQHLR-HH 790
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHLANL G
Sbjct: 791 IFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPHGLDWLKIHLANL-TGL 849
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S RLAF + +DDI DSAD+P+ GR+WW+ A++P+Q LA C+ + A+R+ +P
Sbjct: 850 KKRASLHERLAFADEVMDDILDSADQPMMGRKWWMGADEPWQALACCMEIARAVRTPNPA 909
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
T++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL+ + P DVYSG+AA+V + ++DA
Sbjct: 910 TYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLMPLDLPQDVYSGVAAQVEIFRRQDA 969
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
+ V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 970 KEGLQV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF- 1022
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF R I WL E A++I++ V W TPLG+P+VQPY +
Sbjct: 1023 VWEASHYLVRQVFHSLQEMFSGTRAIQHWLTESARLISNAGSAVEWVTPLGIPIVQPYHQ 1082
Query: 901 LGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ VK +Q +T ++K +Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1083 DSK--VKGGIQSITCNSGKDSSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1140
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF---PKLV------- 1007
F VHD +WTHA DV MN++ RE+F+ L+ PI ++L K F P LV
Sbjct: 1141 FVSVHDCFWTHAADVPVMNQVCREQFIHLHSQPILQDLSRFLVKRFCSSPSLVQRVQITK 1200
Query: 1008 ----FPPLPERGDFDLREVLGSPYFFN 1030
+PE G FDL +V S YFF+
Sbjct: 1201 LMEMLQSVPETGAFDLEQVKQSTYFFS 1227
>gi|429848594|gb|ELA24058.1| DNA-directed RNA polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 1383
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 272/670 (40%), Positives = 384/670 (57%), Gaps = 56/670 (8%)
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPADQLADAP--PDIFPAFTHALRTVSKETKGGSK 432
PW + K+G+ ++ L +TA I+ +Q PAF+HALR K G K
Sbjct: 541 PWPVAVKVKLGAMLLTALLETAKIKVVQEQPVTQTLIHQYQPAFSHALRL-----KRG-K 594
Query: 433 KYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAK 490
K G+I N ++ ++ R + ++PM+VPP WT ++KG S V+R G K
Sbjct: 595 KIGMILLNKTLVTIMKSEPRGDYLAKHLPMVVPPEPWTDFNKGGFLESSSAVVRVKQGDK 654
Query: 491 QQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DV 548
+Q+ + + ++ VF+ LD LG T WR+N V +V+ W+ G A+ + + D+
Sbjct: 655 EQKLYAEAAITRGDMDQVFKGLDILGKTAWRINTPVFNVMLEAWNTGKAFANFPELSPDI 714
Query: 549 PLPEKPETEDEAQLRK-WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHN 607
P +PE D+ R+ W V+ ++ + HSQRC + +L +AR +++ FY+PHN
Sbjct: 715 AYPPEPELSDDPMARRNWIRTVKAIENKKGALHSQRCFMNFQLEIARAFRNQ-SFYFPHN 773
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
VDFRGRAYP+ YLNH+G+D RG+L FA+G+ LG+ GL WLK+HLAN+Y G DK S +
Sbjct: 774 VDFRGRAYPLPTYLNHMGADHVRGLLRFAKGKELGERGLQWLKVHLANVY--GFDKASLK 831
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIP 727
R +F +L +IFDSA+ PL G WWLKAEDP+QCLA C L AL S P ++SH+P
Sbjct: 832 DRESFAMENLVNIFDSANNPLTGNMWWLKAEDPWQCLATCYELKAALESPEPTKYVSHLP 891
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF 787
VHQDG+CNGLQHYAALG DT GA VNL +KPADVYS +A V I +D + +
Sbjct: 892 VHQDGTCNGLQHYAALGGDTWGAEQVNLAPSDKPADVYSAVANIVKDHIAKDVEVKHPI- 950
Query: 788 PDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE---AELFGA 844
A L ++ RK+VKQTVMT+VYGVT+ GAR QI ++L + E +
Sbjct: 951 -----AMGLNGKITRKVVKQTVMTNVYGVTFAGARKQICKQLDALYPELREETGVNNLTS 1005
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP--------------------- 883
+ Y A + AL MF+ A I WLGE + P
Sbjct: 1006 ATYIAGLVFKALSTMFKGAHDIQYWLGEIGGRVCKAVTPEQIELISQDGLSEASKVSRSD 1065
Query: 884 --------VRWTTPLGLPVVQPYRKLGRHTVKTSLQIL--TLQRETEKVMVKRQRTAFPP 933
+ WTTPL +PV QPYRK G + T+LQ + T+ ++ V K+Q AFPP
Sbjct: 1066 MLSQFRATIVWTTPLRMPVAQPYRKHGTRIIHTALQDMSFTVPERSDPVHAKKQLQAFPP 1125
Query: 934 NFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFE 993
NF+HSLD +HM+++A+ C + GL FA VHDS+WTHA DVD MNR+LR+ F+ ++E +
Sbjct: 1126 NFIHSLDATHMLLSALECNELGLDFAAVHDSFWTHAADVDSMNRVLRDAFIRIHEEDVVG 1185
Query: 994 NLLDSFQKSF 1003
L F+ +
Sbjct: 1186 RLATEFEARY 1195
>gi|346973344|gb|EGY16796.1| DNA-directed RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1409
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 311/899 (34%), Positives = 463/899 (51%), Gaps = 114/899 (12%)
Query: 189 YRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLP--YMKSLFLGWFEPLRDAIA 246
Y + Q ++E + + A +RE + + L ++ + S W L +
Sbjct: 350 YEQQREIQARLERDCIDAAVERWREENESLKKMGLNSSVSAASLNSRLYDWQLALEARLT 409
Query: 247 KEQERCRMAKHK----------VAYAPYFD-QLPADMMAVITMHKLMGLLMTGGEHGRAR 295
E + +A+ K Y P+ P+ + AV + L + G + G
Sbjct: 410 DEMRKVELAEAKPRKTPEDYDRCTYGPFLRLSTPSRLAAVTILGTLSSTAILGVDKGMP- 468
Query: 296 VVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLI 355
+ A + E+++R ++ +K K T + K R+ V
Sbjct: 469 LSAALSSLAKLAEEDIRAQLTVQNSKTK------------------TNKSKRRRVVQVAS 510
Query: 356 KKQKLPAVRRIVKGQDDFKPWGQDARAKVGS------------RVIELLTQTAYIQSPAD 403
K KL AVR + + + KP +D + + ++ L TA I+ +
Sbjct: 511 KSSKLDAVRAELGAEGEVKPLAKDTEPRADTPWPVAVKAKVAAALLSALIDTAKIKVVKE 570
Query: 404 --QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMP 460
+ PAF+HA ++ +G KK G++ N ++ ++R + + ++P
Sbjct: 571 HPETKTLISQYQPAFSHA----TQLRRG--KKIGMVLLNKELVNIMKREPQGDFLAKHLP 624
Query: 461 MLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRD-TVKRTPKKQLEPVFEALDTLGNTK 518
M+V P W+ +DKG S ++R HG K QR T + ++ +F+ LD LG T
Sbjct: 625 MVVKPEPWSKFDKGGFLESTSNLVRVKHGDKDQRIYTEAAIARGDMDQIFKGLDVLGQTA 684
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPE-TEDEAQLRKWQWKVRNVKKEN 576
WR+N +L V+ W+ G LA++ N DV +P +P +ED + R W V+ + E
Sbjct: 685 WRINAPILEVMLAAWNSGTALANIPALNPDVHVPTEPAASEDPTERRLWLRAVKAAENER 744
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
HS RC + +L +AR +++ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L FA
Sbjct: 745 GGLHSVRCFMNFQLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFA 803
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+G+ LG+ GL WLK+HLAN+Y G DK S R +F ++L +IFDSA KP+EG RWWLK
Sbjct: 804 DGKELGEKGLKWLKVHLANVY--GFDKASLRDRESFAMDNLVNIFDSASKPMEGNRWWLK 861
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
AEDP+QCLA C L AL S P F+SH+PVHQDG+CNGLQHYAALG DT GA VNL
Sbjct: 862 AEDPWQCLAACFELKAALESPEPTKFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLE 921
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
+KPADVYS +A V I +D + + F A+ K + RK+VKQTVMT+VYGV
Sbjct: 922 PGDKPADVYSAVANIVKDYIAKDLETNNP-FAIAVNGK-----ITRKVVKQTVMTNVYGV 975
Query: 817 TYIGARDQIKRRLKE--RGAPMEE--AELFGASCYAAKVTLTALGEMFQAARGIMSWLGE 872
T+ GA+ Q+ ++L P+E + + AS Y A + AL MF+ A I WLGE
Sbjct: 976 TFQGAKKQVLKQLDAIYPNLPIESGISSMMLAS-YIATLIFKALSSMFRGAHDIQYWLGE 1034
Query: 873 CA-----------------------------------------KIIASENQPVRWTTPLG 891
++A + WTTPL
Sbjct: 1035 IGGRVCRALSAEQLERIAADGIIVSPSSVNRFKITEKKESSTDDLLAQFRATIVWTTPLR 1094
Query: 892 LPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV 949
+PV QPYRK G +KTSLQ LT+ ++ V K+Q AFPPNF+HSLD +HM+++A+
Sbjct: 1095 MPVAQPYRKSGTRIIKTSLQDLSLTVPERSDPVNRKKQLQAFPPNFIHSLDATHMLLSAL 1154
Query: 950 ACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
C + GL+FA VHDS+WTHA D+D MNR+LR+ F+ ++E + L F+ + ++
Sbjct: 1155 ECSELGLSFAAVHDSFWTHAADIDSMNRVLRDSFIRIHEEDVIGRLAAEFEARYKGSIY 1213
>gi|315046832|ref|XP_003172791.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311343177|gb|EFR02380.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1375
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 284/798 (35%), Positives = 434/798 (54%), Gaps = 78/798 (9%)
Query: 246 AKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
++E ERC Y P+ + +A +T+ ++G + + G ++ IG
Sbjct: 435 SEESERCE-------YIPFLLAVGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGR 487
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK-KVTDLIKKQKLPAVR 364
A++ E + T+ EE N V + R+ KV + K R
Sbjct: 488 AVKDEYIVET----------TRRSAIEEAQNENEVYYLNKTFRQMKVYNTTGK-----FR 532
Query: 365 RIVKGQDDFKP---WGQDARAKVGSRVIELLTQTAYI-QSPADQLADAPP-DIFPAFTHA 419
++ +P W K+G+ + +L TA I S D +A+ + PAF H
Sbjct: 533 SYMQKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVAETVTYAMEPAFQH- 591
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHFF 478
V + KG G ++ + V++ L + + +++ ++PM+ P W +G
Sbjct: 592 ---VYQLQKG--HNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNTQGGFLT 646
Query: 479 LPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
P+ V+RT H Q + + + L+ +++ L LG T W++N V V+ W+ G
Sbjct: 647 QPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGE 706
Query: 538 RLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+A++V N ++P EKP+ ED ++ + + HSQRC + ++ +AR
Sbjct: 707 EVANIVAANLNLPELEKPDAEDREAIKTYYRAKTRADNKKMGNHSQRCYLNFQMEIARAY 766
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+E FY PHN+DFRGRAYP+ PY N +G+D CRG+L F+EGR LG+SGL WL+IHL+N+
Sbjct: 767 LNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNV 825
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
+ G DK S + R F+ +H+++I DSA+ L+G+RWWLKA DPFQCLA C+ L AL
Sbjct: 826 F--GYDKASFQEREQFSIDHVEEILDSANNGLKGKRWWLKAADPFQCLAACVELKNALSL 883
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P ++SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+ +A V I
Sbjct: 884 PDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPSDIYTAVAEHVKASI 943
Query: 777 QRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
DA+ DP AKL+ ++ RK+VKQTVMT+VYGVT+IGA Q++R++++
Sbjct: 944 ANDAKAGDPI-------AKLMDGKITRKVVKQTVMTNVYGVTFIGATRQVRRQIEDHYPE 996
Query: 836 MEEA-ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------- 880
+ E+ E+ + + ++ +AL MF A I WLG+CA +
Sbjct: 997 LAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRVTRSLNPSQIEEIRKELE 1056
Query: 881 -------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVK 925
N V WTTPL LPVVQPYR+ + TSLQ+ T++ R +V +
Sbjct: 1057 APSKTDLSKKLKFNNSVIWTTPLKLPVVQPYREAKARQIPTSLQLCTIKDVRGANEVNRR 1116
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
+Q AFPPNF+HSLD +HMM++A+ C + GL F+ VHDS+WTHA D+D+MNR+LR+ FV
Sbjct: 1117 KQLQAFPPNFIHSLDATHMMLSAIKCDELGLNFSAVHDSFWTHAGDIDKMNRVLRDAFVR 1176
Query: 986 LYEMPIFENLLDSFQKSF 1003
++ I L F +
Sbjct: 1177 MHSDDIVGRLAAEFDARY 1194
>gi|242818630|ref|XP_002487156.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713621|gb|EED13045.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1377
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 293/793 (36%), Positives = 428/793 (53%), Gaps = 77/793 (9%)
Query: 261 YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKT 320
+A + LP D +A IT+ ++ L G +V +G ++ E + K+
Sbjct: 422 HADFLRILPPDTLAAITVMHVIQLFARAGVEKGLKVPTIMTSLGQEVQNEFIAQSMIAKS 481
Query: 321 KKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDA 380
++ + + E +KK + K+ L ++ + + W D
Sbjct: 482 ER----------DSRHHKFIKQVVENRKKKAGRIKFKKLLTEMKSNSRDVESEFTWPVDV 531
Query: 381 RAKVGSRVIELLTQTAYIQSPADQLADAPPD-------IFPAFTHALRTVSKETKGGSKK 433
AKVG ++ +L A ++P Q PD + AF H S E G +K
Sbjct: 532 HAKVGGALLSVLFDCA--KAPVIQ---EDPDTKKRIMVMESAFQH-----SYEINRG-RK 580
Query: 434 YGVIECNPLVLKGLERTARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTH-GAKQ 491
+G++ +P V + L R A + V +MPML P WT +DKG S +MRT G
Sbjct: 581 FGLLHAHPEVTRRLIREAPNAVQARHMPMLSEPQPWTAFDKGGFLAQRSPIMRTTPGDTL 640
Query: 492 QRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVP 549
Q +K+ + L V LD LG T W +NN V V+ W+ G A + + +P
Sbjct: 641 QHSYMKKALENNGLPEVRAGLDILGKTAWTINNDVFDVMLEAWNTGEAFAKIPPLDPQIP 700
Query: 550 LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
+PEKP ++ ++ + K+R V+ HSQRC I ++ +AR K++ FY PHN+D
Sbjct: 701 MPEKPADDNPEAIKVYNNKLREVENLRSGLHSQRCFINFQMEIARAYKNQT-FYLPHNMD 759
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669
FRGRAYP+ YLN + +D R +L F +G+ LG++GL WLKIHL+N+Y G DK S + R
Sbjct: 760 FRGRAYPLPAYLNQMSADNARSLLLFKKGKPLGEAGLRWLKIHLSNVY--GFDKASLKER 817
Query: 670 LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
FT HL+D+ DSA+K L GR+W+L+AEDP+QCLA C L AL+ +P ++S +PVH
Sbjct: 818 EEFTMQHLEDVLDSANKGLHGRKWFLEAEDPWQCLAACCELRNALKLENPTEYVSRLPVH 877
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPD 789
QDGSCNGLQHYAALG D GA VNL ++P D+Y+G++ V ++RDA +
Sbjct: 878 QDGSCNGLQHYAALGGDMEGAQHVNLEPGDRPKDIYTGVSDFVTEKVERDAAAGHEI--- 934
Query: 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAA 849
AKLL+ ++ RK+VKQTVMT+VYGVT++GA Q++R++ +EE G S Y A
Sbjct: 935 ---AKLLVGKIKRKIVKQTVMTNVYGVTFVGAIRQVRRQIAAHYPGLEETP--GISKYIA 989
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIAS-------------------------ENQPV 884
AL +F A I WLG+CA I+ E P+
Sbjct: 990 SAIFEALSTIFSGAHSIQYWLGDCATRISQAISPDQLDALAKNVLQDNTSAKEDVEMDPL 1049
Query: 885 R-------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE--KVMVKRQRTAFPPNF 935
R WTTPLGLPVVQPYR + V T+LQ L + +++ V ++Q AFPPNF
Sbjct: 1050 RMFRSTIIWTTPLGLPVVQPYRTVKCQRVYTTLQTLNIIQDSTSGNVSKRKQLQAFPPNF 1109
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+HSLD +HMM++A+ C + GL F+ VHDS+WTHACDVD+MN LR+ F+ ++ I + L
Sbjct: 1110 IHSLDATHMMLSAIECYRQGLVFSAVHDSFWTHACDVDKMNIALRDCFIRMHSDDIVKRL 1169
Query: 996 LDSFQKSFPKLVF 1008
F+ + +F
Sbjct: 1170 AAEFRARYEGHIF 1182
>gi|387541882|gb|AFJ71568.1| DNA-directed RNA polymerase, mitochondrial precursor [Macaca mulatta]
Length = 1228
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 281/692 (40%), Positives = 400/692 (57%), Gaps = 56/692 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G ++ E+L Q + S D + P H + R V
Sbjct: 558 QPWPLPVQMELGKQLAEMLVQATRMPSSLDN-RHGSSRLVPVLYHVYSFRNV-------- 608
Query: 432 KKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT- 486
++ G+++ +P ++ LE TA + + +PML PP+ WT GA P+ +MRT
Sbjct: 609 QQIGILKPHPAYVQLLE-TAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTV 667
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVD 544
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 668 EGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPKLGVPAP 727
Query: 545 RNDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG 601
++ P P + P++ A+ + + ++ +K RE HS R + +LS+A+ ++
Sbjct: 728 ASEAPQPAEAHVPQSAAPARKAELRRELARCQKVAREMHSLRAEALYRLSLAQHLRGRV- 786
Query: 602 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGV 661
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 787 FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGFK 845
Query: 662 DKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
+ RLAF E +DDI DSAD+P+ GR+WW+ AE+P+Q LA C+ + A+R S P
Sbjct: 846 KREPLRKRLAFAEEVMDDILDSADQPMTGRKWWMGAEEPWQTLACCMEVANAVRCSDPAA 905
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++DAQ
Sbjct: 906 YVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQ 965
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL 841
R V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E +
Sbjct: 966 RGTRV------AQMLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELTDFPQEF-V 1018
Query: 842 FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKL 901
+ AS Y + +L EMF R I WL E A++I+ V W TPLG+P++QPYR
Sbjct: 1019 WEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGIPIIQPYRL- 1077
Query: 902 GRHTVKT---SLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
H VK +Q +T ++K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 1078 -EHKVKQVRGGIQSITYIHNGDISQKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1136
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL-----------------LDS 998
LTF VHD YWTHA DV MN++ RE+FV L+ PI E+L
Sbjct: 1137 LTFVSVHDCYWTHAADVAVMNQVCREQFVRLHSEPILEDLSRFLVSRFCPNPTPRKISQC 1196
Query: 999 FQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
++ S K +P+ G FDL V S YFF+
Sbjct: 1197 WEASQLKETLQAVPKPGAFDLERVKHSTYFFS 1228
>gi|115388207|ref|XP_001211609.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
gi|114195693|gb|EAU37393.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
Length = 1382
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 295/810 (36%), Positives = 435/810 (53%), Gaps = 88/810 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+++ERC Y + L + +A +T+ ++ GG +V IG
Sbjct: 423 EQKERCE-------YGVFLRSLDPERLAALTILAVISTFSRGGMEKSIKVSAIVTTIGKE 475
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL--RKKVTDLIKKQKLPAVR 364
++ E+ K L+K + G ++ V +E L RK+ + Q +
Sbjct: 476 LQDELIAEKTLQK------------QSGADARRVKAVKEMLAGRKQKDGRARWQN---IV 520
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQT--AYIQSPADQLADAPPDIFPAFTHALRT 422
R ++ +D W +AK+G+ ++ LL + A + Q + PAF H+ +
Sbjct: 521 RSLEQEDPTVVWPPRVKAKIGAVLMSLLFEVGKAPVAMQHSQSKKQEVTMQPAFQHSYQI 580
Query: 423 VSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLP 480
+K G I +P ++K + E TA ++ ++PM+ P W G G +F
Sbjct: 581 ------SWGRKGGYIHLHPEIVKIITKEPTA-DLLGRHLPMICKPKPWGGMKDGGYFLYQ 633
Query: 481 SYVMR-THGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538
+ ++R T G Q +K + L+ + E LD LG+T W +N V V+ W+ G
Sbjct: 634 NNIVRSTPGETLQPSYMKAALQNDGLKQIREGLDILGSTGWTINRDVFDVMLEAWNLGEP 693
Query: 539 LADLVD-RNDVPLPEKPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
+A+L D+P P +P E+ EA+ +KW +R+++ HS RC ++ VAR
Sbjct: 694 IANLSPLEPDLPHPPRPAPEEGYEAE-KKWDNAMRDIENRRAGMHSNRCFQNFQMEVARA 752
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
++E FY PHN+DFRGRAYP+ PYLN +G+D RG+L F+E + LG +GL WLKI +AN
Sbjct: 753 YRNET-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGTTGLKWLKIQIAN 811
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
L G DK S R F ++HLDDI DSA+K L GRRWWL AEDP+QCLA C L AL+
Sbjct: 812 L--AGFDKASLSEREKFADDHLDDILDSANKGLHGRRWWLNAEDPWQCLAACCELRNALQ 869
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
+P + S +P+HQDGSCNGLQHYAALG D++GA VNL ++P+DVY+G+A V
Sbjct: 870 YQNPAEYPSRLPIHQDGSCNGLQHYAALGGDSIGAQQVNLEPSDRPSDVYTGVAEFVKAA 929
Query: 776 IQRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ R+A R DP AK L ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 930 VAREAARGDPV-------AKFLDGRITRKIVKQTVMTNVYGVTFMGAMKQVRKQLVDHYP 982
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP----------- 883
+ + + Y A+ ALG MF A I WLG+CA I P
Sbjct: 983 DLSAEQKQTGALYIARKIFEALGTMFNGAHEIQYWLGDCASRITQSLSPEQIEEVAKEVL 1042
Query: 884 -----------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL--QRE 918
V WTTPLG+PVVQPYR + T+LQ L++
Sbjct: 1043 TPTKSTTGSKGKLKDPSEKFRSTVIWTTPLGMPVVQPYRTRKARRIHTTLQDLSIVDMSS 1102
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
+ V ++Q AFPPNF+HSLD +HM+M+A AC +AGL+F+ VHDS+WTHACDVD+M+ I
Sbjct: 1103 EDPVSKRKQLQAFPPNFIHSLDATHMIMSATACHRAGLSFSAVHDSFWTHACDVDKMSHI 1162
Query: 979 LREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
LRE FV ++ + + L F + + +F
Sbjct: 1163 LREAFVRMHSDDVVKRLAAEFDVRYGQNLF 1192
>gi|351714005|gb|EHB16924.1| DNA-directed RNA polymerase, mitochondrial [Heterocephalus glaber]
Length = 1213
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/670 (40%), Positives = 389/670 (58%), Gaps = 50/670 (7%)
Query: 390 ELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLER 449
E+L Q+ + P+ L + P H T G ++ G + +P ++ L+
Sbjct: 565 EILVQSVQL-PPSLALPQSSSQPVPVLYHVY------TFRGIRQIGFLRPHPAFIQLLDD 617
Query: 450 TARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLE 505
A ++I MPML PP+ W G P+ +MR+ G+ Q ++ + P +L
Sbjct: 618 AAEPLMIFEATDMPMLCPPLPWASSQSGGFLLSPTKLMRSVDGSLQHQNLLDSWPPTELH 677
Query: 506 PVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRNDVP------LPEKPETE 557
+ L LGN WRVN RVL ++ I+ G RL ++ P LP
Sbjct: 678 GALDTLTQLGNCAWRVNGRVLDLVLEIFRNKGCARLGVPPPASEAPRPPLEDLPPNASPH 737
Query: 558 DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPM 617
+A+LR+ +V + K RE H R + +L A+ ++ + F+ PHN+DFRGR+YP
Sbjct: 738 RKAELRQ---EVASCLKIAREMHGLRREALYRL--AQHLR-HQVFWLPHNMDFRGRSYPC 791
Query: 618 HPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHL 677
P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G + S RLAF +
Sbjct: 792 PPHFNHLGSDLARALLEFAEGRPLGPHGLDWLKIHLINL-TGVKKRESLRVRLAFANTVM 850
Query: 678 DDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGL 737
DDI DSAD+P+ GR+WW++AEDP+Q LA C+ + A+RS P ++SH+P+HQDGSCNGL
Sbjct: 851 DDILDSADQPMTGRKWWMEAEDPWQTLACCMEVAGAVRSPDPAAYVSHLPIHQDGSCNGL 910
Query: 738 QHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLL 797
QHYAALGRD++GAA+VNL+A +KP DVYSG+AA+V V +DA++ V A++L
Sbjct: 911 QHYAALGRDSVGAASVNLMASDKPQDVYSGVAAQVEVFRTQDAKQGLKV------AQVLE 964
Query: 798 SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALG 857
+ RK+VKQTVMT VYGVT G R QI++RL+E + + ++ AS Y ++ +L
Sbjct: 965 GFISRKVVKQTVMTVVYGVTLYGGRLQIEKRLREL-SDFPQVFVWEASRYLVRLVFKSLQ 1023
Query: 858 EMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR 917
E+F + R I WL E A++IA V W TPLG+P++QPY + + ++ LQ +T
Sbjct: 1024 EIFSSTRTIQHWLTESARLIAQAGSAVEWVTPLGIPIIQPYHRESKLVLRGGLQSITWNS 1083
Query: 918 E---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
T K +Q+ FPPNF+HSLD HMM+TA+ C + GLTF VHD +WTHACDV
Sbjct: 1084 SVDPTRKPNTMKQKNGFPPNFIHSLDSCHMMLTALHCYRKGLTFVSVHDCFWTHACDVPI 1143
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFPKL--------------VFPPLPERGDFDLR 1020
MN++ RE+F+ L+ PI E+L + F +P++GDFDL+
Sbjct: 1144 MNQVCREQFIRLHSQPILEDLSAFLVRRFCSADRAELGTDTRQLLETLLSVPQKGDFDLQ 1203
Query: 1021 EVLGSPYFFN 1030
+V S YFF+
Sbjct: 1204 QVKSSTYFFS 1213
>gi|302498776|ref|XP_003011385.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
gi|291174935|gb|EFE30745.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
Length = 1305
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 284/799 (35%), Positives = 431/799 (53%), Gaps = 82/799 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+E ERC Y P+ + +A +T+ ++G + + G ++ IG A
Sbjct: 366 EESERCE-------YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRA 418
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK-KVTDLIKKQKLPAVRR 365
++ E I T+ EE N V + R+ KV + K R
Sbjct: 419 VKDEYIIET----------TRRSAIEEAQSENEVYYLNKTFRQMKVYNSTGK-----FRS 463
Query: 366 IVKGQDDFKP---WGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTH 418
++ +P W K+G+ + +L TA I + P + + PAF H
Sbjct: 464 YMQKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQH 521
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHF 477
V + KG G ++ + V++ L + + +++ ++PM+ P W ++G
Sbjct: 522 ----VYQLQKG--HNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFL 575
Query: 478 FLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG 536
P+ V+RT H Q + + + L+ +++ L LG T W++N V V+ W+ G
Sbjct: 576 TQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSG 635
Query: 537 GRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
+A++V N ++ EKP+ ED ++ + + HSQRC + ++ +AR
Sbjct: 636 EEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRADNKKMGNHSQRCYLNFQMEIARA 695
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
+E FY PHN+DFRGRAYP+ PY N +G+D CRG+L F+EGR LG+SGL WL+IHL+N
Sbjct: 696 YLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSN 754
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
++ G DK S + R F +H++DI DSA+ L+G+RWWLKA DPFQCLA C+ L AL
Sbjct: 755 VF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKRWWLKAADPFQCLAACVELKNALS 812
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
P ++SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+ +A V
Sbjct: 813 LPDPTKYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPSDIYTAVAEHVKAS 872
Query: 776 IQRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
I DA+ DP AKL+ ++ RK+VKQTVMT+VYGVT+IGA Q++R++++
Sbjct: 873 IASDAKAGDPI-------AKLMDGKITRKVVKQTVMTNVYGVTFIGATRQVRRQIEDHYP 925
Query: 835 PMEEA-ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------------- 880
+ E+ E+ + + ++ +AL MF A I WLG+CA +
Sbjct: 926 ELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRVTRSLNPSQIEEIRKEL 985
Query: 881 --------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMV 924
N V WTTPL LPVVQPYR+ + TSLQ+ T++ R +V
Sbjct: 986 DSPSKTDLSKKLKFNNSVIWTTPLKLPVVQPYREAKARQIPTSLQLCTIKDIRGANEVNR 1045
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
++Q AFPPNF+HSLD +HMM++A+ C + GLTF+ VHDS+WTHA D+D+MNR+LR+ FV
Sbjct: 1046 RKQLQAFPPNFIHSLDATHMMLSAIKCDELGLTFSAVHDSFWTHAGDIDKMNRVLRDAFV 1105
Query: 985 ELYEMPIFENLLDSFQKSF 1003
++ I L F +
Sbjct: 1106 RMHSDDIVGRLAAEFNARY 1124
>gi|378726279|gb|EHY52738.1| DNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1425
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 313/884 (35%), Positives = 448/884 (50%), Gaps = 109/884 (12%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMK--SLFLGWFEPLRDAIAKEQERC 252
RQ K+E +A + A ++ + +L + K +L W E L + I E +
Sbjct: 353 RQRKLERDAIQSALQRWKTEYQKRARSGITGDLAHGKIGALLWQWHEILAEKITNEIKLA 412
Query: 253 R-----------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAAC 301
R K + +P+ + LPA+ +A +T LM ++ G +A++V+
Sbjct: 413 REEDATPGKKTAQQKLRAECSPFLELLPAERLAAVTSVALMQIMSKVGASKQAKLVRLVT 472
Query: 302 IIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEG-------DESNTVTTEQEKLRKKVTDL 354
+G AIE E + +K + K K E DE+ T + T
Sbjct: 473 ELGQAIETEYDATQVAQKRNAMLKAKEKLAETAPGAPLKWDETLDNTLHRRSSHHAATPY 532
Query: 355 IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SPADQLADAPPDIF 413
K K W + AK+GS + EL+ TA I + D+ I
Sbjct: 533 AYK----------------KNWSKTIHAKLGSVLCELMFDTAKIMITREDKTTGKKVSIA 576
Query: 414 -PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL-ERTARHMVIPYMPMLVPPVKWTGY 471
P F H S + G ++ G + + +K L A H++ +PM+ PP W G+
Sbjct: 577 QPVFIH-----STSYQNG-RRVGTVSLHEDFVKILVSEPAEHLIAKQLPMVCPPRPWKGF 630
Query: 472 DKGAHFFLPS---YVMRTHGAKQQRD-TVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLS 527
G FL S ++ + Q+D V + L+ +F +D LG T WR+N +V S
Sbjct: 631 YDGG--FLESSQPFLRVKYNETSQKDYGVAAAERGDLDQLFAGVDILGKTGWRINKQVFS 688
Query: 528 VLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQW--KVRNVKKENRERHSQRC 584
V+ W+ G +A+L N P E+P E+ +W W K+R + E HS RC
Sbjct: 689 VMLEAWNSGEEIANLPPLNKQYPEVERP-AENAPPKERWNWFLKMRMIDNERSGIHSNRC 747
Query: 585 DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS 644
++ +A+ DE FY PHNVDFRGRAYP+ PYLN +G+D RG+L F GR LG
Sbjct: 748 FQNFQMEIAKAYLDET-FYLPHNVDFRGRAYPIPPYLNQMGADNARGLLLFDRGRELGAD 806
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
GL WLKIHLAN+Y G DK S R F +H+DD++DS PL+GRRWWL AEDP+QCL
Sbjct: 807 GLRWLKIHLANVY--GYDKASLSDRAQFPMDHIDDVYDSVQNPLKGRRWWLTAEDPWQCL 864
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A C L AL S P ++S +P+HQDGSCNGLQHYAALG D GA VNL +KPADV
Sbjct: 865 ATCYELANALDSPDPTKYVSRLPIHQDGSCNGLQHYAALGGDIAGARQVNLEPGDKPADV 924
Query: 765 YSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQ 824
Y+G+ V I+ DA + A+ AK+L ++ RK+VKQTVMT+VYGVT++GA Q
Sbjct: 925 YTGVCELVKADIKEDAAKGDAL------AKMLDGRITRKVVKQTVMTNVYGVTFLGAVRQ 978
Query: 825 IKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP 883
+++++ + EA L G AS Y A+ LG +F A I WLG+CA I+S P
Sbjct: 979 VRKQVDALIPEVVEARLSGKASSYIARKIFKGLGALFTGAHEIQYWLGDCANRISSSISP 1038
Query: 884 ------------------------------------------VRWTTPLGLPVVQPYRKL 901
V WTTPL LPVVQPYR
Sbjct: 1039 AQQDRMYQKEYGVQTEPKERPQSRRKKAKSKEILESGRFLSTVVWTTPLKLPVVQPYRVN 1098
Query: 902 GRHTVKTSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFA 959
++T+LQ +TL + + + V ++Q AFPPNF+HSLD +HM+++A+ + GLTF+
Sbjct: 1099 KGMKIQTNLQNITLAQPSVADSVNKRKQLQAFPPNFIHSLDATHMILSALKANELGLTFS 1158
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
VHDS+WTHA DV ++ +LR+ F+ ++ I L F+ +
Sbjct: 1159 AVHDSFWTHAADVSTLSGLLRDAFIRMHSEDIIGRLAAEFKMRY 1202
>gi|295667525|ref|XP_002794312.1| DNA-directed RNA polymerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286418|gb|EEH41984.1| DNA-directed RNA polymerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1405
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 308/888 (34%), Positives = 453/888 (51%), Gaps = 123/888 (13%)
Query: 193 KMRQVKIETEA-------WEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 245
+MRQ ++E++ W K + R++ ++ P P M +L W L I
Sbjct: 364 EMRQRRLESDCVESAIARWHKESENLRKVGVNPV-----PGKP-MGALLYDWHTQLMSKI 417
Query: 246 AKEQ-------ERCRMAKH---KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRAR 295
+E + RM +V +PY + D +A +T+ L G +
Sbjct: 418 TEELERIEESERKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVK 477
Query: 296 VVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLI 355
+ +G +I E + E +NK G S + +KL K T
Sbjct: 478 LTILVMYLGKSIHDEFMAMQL-------RELENKSRSNGRTSKFI----DKLVHKGT--- 523
Query: 356 KKQKLPAVRRIVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF 413
+K ++ R I + + +P W +AK+G+ + +L +A +
Sbjct: 524 RKAQVQWKRLIARFEQSQRPVEWSPIVQAKIGACLALMLLSSATV--------------- 568
Query: 414 PAFTH-------------ALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYM 459
P F++ A R V + +G + G + + +++ L R ++ ++
Sbjct: 569 PVFSNDPKTNKTKRSDQMAFRRVYQLERGF--RVGYVHAHDRIVEKLRREPLGDLLAKHL 626
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKK-QLEPVFEALDTLGNT 517
PM+ PP WT G PS V+R G Q V+ + L+ VF L LG T
Sbjct: 627 PMVCPPRPWTSARNGGFLESPSPVLRVKEGDVSQLSYVETAAARGDLDTVFAGLTVLGKT 686
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLV-DRNDVPLPEKPETEDEAQLRKWQWKVRNVKKEN 576
W+VN VL V+ W+ G +A+L + D+P PE+P TED L + +
Sbjct: 687 GWKVNRGVLEVMLEAWNSGEEIANLAPETPDIPEPERPNTEDRDALIDYYRAKMHAANTR 746
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
HSQRC +L +AR ++E FY PHN+DFRGRAYPM PY N +G+D CRG+L F+
Sbjct: 747 SSYHSQRCFQNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFS 805
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+GR LG SGL WLKIHLAN++ G DK S + R F+ +HL+DI DSA L+G++WW+
Sbjct: 806 KGRELGTSGLRWLKIHLANVF--GFDKASFQEREQFSMDHLEDIRDSAINGLKGKKWWVD 863
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
A DPFQCLA CI LT A++ P F+SH+PVHQDGSCNGLQHYAALG D +GA VNL
Sbjct: 864 AADPFQCLAACIELTNAMQLEDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLE 923
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
++P+D+Y+G+A V IQ+DA AKLL +++ RK+VKQTVMT+VYGV
Sbjct: 924 PSDRPSDIYTGVAEHVKASIQKDAADGNET------AKLLENKITRKIVKQTVMTNVYGV 977
Query: 817 TYIGARDQIKRRLKERGAPMEEAELFGA-SCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
T++GA Q++++L + + + + G + Y A+ ALG MF A I WLG+CA
Sbjct: 978 TFLGAIRQVRKQLLDHYPELFHSGVVGQYATYIARKIFAALGSMFTGAHNIQFWLGDCAN 1037
Query: 876 IIASENQP--------------------------------------VRWTTPLGLPVVQP 897
I+ P V WTTPL LPV QP
Sbjct: 1038 RISQSLSPEQIETLSDGKGLEVAGNFRGSKKLAKAIKNPKAHFKSTVVWTTPLKLPVAQP 1097
Query: 898 YRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
YR V + LQ L+++ + ++ + ++Q AFPPNFVHSLD +HM ++AV C + G
Sbjct: 1098 YRDAACVRVYSDLQQLSIRNPQASDVINKRKQLQAFPPNFVHSLDATHMFLSAVKCDELG 1157
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
L+F+ VHDS+WTHA DVD MNR+LR+ F+ ++ I + L F+ +
Sbjct: 1158 LSFSAVHDSFWTHAADVDTMNRVLRDAFILMHSEDIVQRLASEFKTRY 1205
>gi|380495438|emb|CCF32395.1| DNA-dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1400
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/680 (41%), Positives = 390/680 (57%), Gaps = 65/680 (9%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGS 431
KPW RAKVG+ ++ L +TA I+ + + PAF+H VS+ KG
Sbjct: 542 KPWPVAVRAKVGAALLSALIETAKIKVVKEHPETKALVSQYQPAFSH----VSRLKKG-- 595
Query: 432 KKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGA 489
KK G+I N ++ ++R + + ++PM+V P W +DKG + ++R G
Sbjct: 596 KKTGMILLNKELVNIMKREPQGDYLAKHLPMVVEPEPWQAFDKGGFLESRANLVRIKQGD 655
Query: 490 KQQR-DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-D 547
K Q+ + + ++ VF+ LD LG T WRVN VL+V+ W+ G LA+L N +
Sbjct: 656 KDQKLYSEAAIARGDMDQVFKGLDVLGKTPWRVNTPVLNVMLAAWNTGEALANLPALNPN 715
Query: 548 VPLPEKPE-TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
+P+P +PE T D R W VR + E HS RC + +L +AR +++ FY+PH
Sbjct: 716 IPIPREPEATNDPLAHRAWVRAVRAAENERGGMHSVRCFMNFQLEIARAFRNQT-FYFPH 774
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
N+DFRGRAYP+ YLNH+G+D RG+L FA G+ LG+ GL WLK+H+AN++ G DK S
Sbjct: 775 NIDFRGRAYPLPTYLNHMGADHVRGLLRFANGKELGEEGLKWLKVHVANVF--GFDKASL 832
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
+ R +F ++L +IFDSA+ PL+G RWWLKAEDP+QCLA C L AL S P F+SH+
Sbjct: 833 KERESFAMDNLVNIFDSANNPLDGTRWWLKAEDPWQCLATCFELKAALESPEPTKFVSHL 892
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
PVHQDG+CNGLQHYAALG D+ GA VNL +KPADVYS +A V I +DA+ V
Sbjct: 893 PVHQDGTCNGLQHYAALGGDSWGARQVNLEPGDKPADVYSAVANIVKEHIAKDAESG-NV 951
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG--- 843
ALR K + RK+VKQTVMT+VYGVT+ GA+ Q+ ++L + + F
Sbjct: 952 IAVALRDK-----ITRKVVKQTVMTNVYGVTFAGAKKQVCKQLDSLYPDLPKESGFDNII 1006
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAK---------------------------- 875
S Y A + AL MF+ A I WLG
Sbjct: 1007 TSSYVATLVFKALSSMFRGAHDIQYWLGXIGXRVCRALSAEQLERIKNDNILPSSSATAK 1066
Query: 876 ----------IIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL--QRETEKVM 923
I+A + WTTPL +P+ QPYRK G +KTSLQ L+L ++ V
Sbjct: 1067 AGDRKTTTDDILAQFRATIVWTTPLRMPISQPYRKSGTRCIKTSLQDLSLIIPERSDPVH 1126
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
++Q AFPPNF+HSLD +HM+++A+ C + GL FA VHDS+WTHA DV+ MNR+LR+ F
Sbjct: 1127 RRKQLQAFPPNFIHSLDATHMLLSALECHELGLDFAAVHDSFWTHASDVNTMNRVLRDAF 1186
Query: 984 VELYEMPIFENLLDSFQKSF 1003
+ ++E + L F+ +
Sbjct: 1187 IRIHEEDVVGRLAAEFEARY 1206
>gi|302655337|ref|XP_003019459.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
gi|291183183|gb|EFE38814.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
Length = 1305
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 283/799 (35%), Positives = 431/799 (53%), Gaps = 82/799 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+E ERC Y P+ + +A +T+ ++G + + G ++ IG A
Sbjct: 366 EESERCE-------YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRA 418
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK-KVTDLIKKQKLPAVRR 365
++ E I T+ EE N V + R+ KV + K R
Sbjct: 419 VKDEYIIET----------TRRSAVEEAQSENEVYYLNKTFRQMKVYNSTGK-----FRS 463
Query: 366 IVKGQDDFKP---WGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTH 418
++ +P W K+G+ + +L TA I + P + + PAF H
Sbjct: 464 YMQKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQH 521
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHF 477
V + KG G ++ + V++ L + + +++ ++PM+ P W ++G
Sbjct: 522 ----VYQLQKG--HNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFL 575
Query: 478 FLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG 536
P+ V+RT H Q + + + L+ +++ L LG T W++N V V+ W+ G
Sbjct: 576 TQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSG 635
Query: 537 GRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
+A++V N ++ EKP+ +D ++ + + HSQRC + ++ +AR
Sbjct: 636 EEVANIVAANLNLAELEKPDADDHEAVKAYYRAKTRADNKKMGNHSQRCYLNFQMEIARA 695
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
+E FY PHN+DFRGRAYP+ PY N +G+D CRG+L F+EGR LG+SGL WL+IHL+N
Sbjct: 696 YLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSN 754
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
++ G DK S + R F +H+DDI DSA+ L+G+RWWL+A DPFQCLA C+ L AL
Sbjct: 755 VF--GFDKASFQEREQFAIDHVDDILDSANNGLKGKRWWLQAADPFQCLAACVELKNALS 812
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
P ++SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+ +A V
Sbjct: 813 LPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPSDIYTAVAEHVKAS 872
Query: 776 IQRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
I DA+ DP AKL+ ++ RK+VKQTVMT+VYGVT+IGA Q++R++++
Sbjct: 873 IASDAKAGDPI-------AKLMDGKITRKVVKQTVMTNVYGVTFIGATRQVRRQIEDHYP 925
Query: 835 PMEEA-ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------------- 880
+ E+ E+ + + ++ +AL MF A I WLG+CA +
Sbjct: 926 ELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRVTRSLNPSQIEEIRKEL 985
Query: 881 --------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMV 924
N V WTTPL LPVVQPYR+ + TSLQ+ T++ R +V
Sbjct: 986 DSPSKTDLSKKLKFNNSVIWTTPLKLPVVQPYREAKARQIPTSLQLCTIKDIRGANEVNR 1045
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
++Q AFPPNF+HSLD +HMM++A+ C + GLTF+ VHDS+WTHA D+D+MNR+LR+ FV
Sbjct: 1046 RKQLQAFPPNFIHSLDATHMMLSAIKCDELGLTFSAVHDSFWTHAGDIDKMNRVLRDAFV 1105
Query: 985 ELYEMPIFENLLDSFQKSF 1003
++ I L F +
Sbjct: 1106 RMHSDDIVGRLAAEFNARY 1124
>gi|47215657|emb|CAG01374.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 283/697 (40%), Positives = 399/697 (57%), Gaps = 71/697 (10%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP-DIFPAFTH--ALRTVSKETKGGSK 432
W ++G+ +++L+ + I S D L A + P H A R+ ++
Sbjct: 143 WPYIVTLELGTYMVDLMVKNLKINS--DILNPAHDRKLIPVLYHMYAFRS--------TR 192
Query: 433 KYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRTHG 488
+ G I+ +P +L +++ A + + MPML PPV WT GA+ P+ +MRT
Sbjct: 193 QIGFIKPHP-ILSQMQQEAMETKLTFDSYVMPMLCPPVPWTSVRFGAYLLTPTKLMRTVE 251
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV 548
Q D + + L PV ++L+ LGN W++N VL ++ I++ G ++ D+
Sbjct: 252 GAMQHDVLLEK-CQNLHPVLDSLNQLGNCAWKINKPVLDIIISIFNDRGS-----EKLDI 305
Query: 549 PLP--EKPE-----------TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
P P E P T E L K Q V + KK+ E HS R D KLS+A
Sbjct: 306 PPPLTEAPRIPHFNPHDPNYTASEKALMKRQ--VMSAKKKYSEMHSLRMDALYKLSIAHH 363
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
M+DE F++PHN+DFRGR YP PY NHLGSD+ R L FAEG+ LG GL WLKIHL N
Sbjct: 364 MRDEI-FWFPHNMDFRGRTYPCPPYFNHLGSDVTRATLLFAEGKPLGAKGLDWLKIHLVN 422
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
L G + S +GRL + + ++DI DSAD PL+G++WW+ A++P+Q L+ C+ + A+R
Sbjct: 423 L-TGLKKRSSLQGRLEYADTIMEDILDSADNPLKGKKWWMNADEPWQALSCCMEIANAVR 481
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
+ FISH PVHQDGSCNGLQHYAALGRD +GA +VNL+ E P DVYSG+A +V +
Sbjct: 482 APDSTQFISHFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCEVPQDVYSGVAQQVEEL 541
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
RDA+ + A++L + RK+VKQTVMT VYGVT G R QI++RLKE
Sbjct: 542 RARDAKSGLKI------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDEF 595
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
+E ++ AS Y ++ + L EMF R I WL E A++I+ V W TPLGLP++
Sbjct: 596 PKE-HVWDASHYLVRLVFSGLKEMFTGTREIQDWLTESARLISKSGHTVEWVTPLGLPII 654
Query: 896 QPYRKLGRHTVKTSLQILTLQRETEKVMVK----RQRTAFPPNFVHSLDGSHMMMTAVAC 951
QPY + R+ V + + +L K +++ +Q+ AFPPNF+HSLD +HMM+TA+ C
Sbjct: 655 QPYHR-TRNQVVSHVWGCSLPVHCSKAVLRPDTVKQKNAFPPNFIHSLDSTHMMLTALHC 713
Query: 952 RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN----LLDSFQKSFPK-- 1005
AGLTF VHD +WTHA VD MN++ RE+FV L+ PI + LL + S P
Sbjct: 714 YSAGLTFVSVHDCFWTHALTVDTMNKVCREQFVALHSQPILQELSNFLLRKYCTSLPSEA 773
Query: 1006 ------------LVFPPLPERGDFDLREVLGSPYFFN 1030
L+ +P+ GDFDL+ V S YFF+
Sbjct: 774 RNKKYQECRRLMLLLAKVPQTGDFDLQRVKESTYFFS 810
>gi|393219634|gb|EJD05121.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 1397
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 297/852 (34%), Positives = 447/852 (52%), Gaps = 109/852 (12%)
Query: 258 KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVR----- 312
K+ P+ L +++IT+ +LM L TGG + +A +G AIE E +
Sbjct: 440 KMRMGPFLSLLKPSKLSLITILELMRLQGTGGVTEGMKTARALLTVGKAIEMEYKAQILK 499
Query: 313 ---IHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL----------IKKQK 359
+H + + G ++ D +++ +
Sbjct: 500 KNNVHVPVMSSFSLTAAGGAGAGGGGGGAGGGGIGGGGVGRINDSGFFTRRAYEELREWR 559
Query: 360 LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELL------TQTAYIQSPADQLADAPPDIF 413
A + Q+ W R +V S +++ L T+TA + +++ + P F
Sbjct: 560 KAASKHFEDSQEWASDWTHAIRVRVASFLVDCLMDVATVTRTAVNRRTGEEIFEQQPAFF 619
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIP-YMPMLVPPVKWTGY 471
++ + LR + GVI NP+V + L++ R + P ++PMLV P W +
Sbjct: 620 QSYEY-LR---------GHRLGVIRLNPVVAERLQKDDIRATLHPRHLPMLVKPKAWINH 669
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLD 530
D+G + + + VMR ++Q ++ + +E VF +LD LG+T W +N + V+
Sbjct: 670 DEGGYIYNKNSVMRLKDTQEQLTYLRHAAQAGHMEHVFASLDVLGSTPWVINREIFDVVL 729
Query: 531 RIWSCGGRLADLVDRNDV-PLPEKPETEDEAQLRKWQ----WKVRNVKKENRERHSQRCD 585
++W+ G R + + N + P P +PE D Q K + WK K N HS RC
Sbjct: 730 QVWNSGDRFVKIPEANYLEPEPVRPENYDTDQAAKTRYLMAWKQWQTNKANS--HSTRCS 787
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+ K+ +AR + Y+PHN+DFRGRAYP+ P+LNH+G DL RG+++FAE + LG SG
Sbjct: 788 VNYKVEIARSFL-ADTMYFPHNIDFRGRAYPIPPHLNHIGDDLSRGLMKFAEKKPLGTSG 846
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
L WLKIHLANL G DK S E R+ F +H+ DI DSA++PLEG +WW+KA+DP+QCLA
Sbjct: 847 LRWLKIHLANL--SGFDKGSFEERVQFVTDHMADIIDSAERPLEGNQWWVKADDPWQCLA 904
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C L AL SS PE + S++PVHQDG+CNGLQHYAALG D +GA VNL +KP+DVY
Sbjct: 905 ACKELHHALESSDPEGYESNLPVHQDGTCNGLQHYAALGGDAMGARQVNLDITDKPSDVY 964
Query: 766 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
+ +A V + I++D + A++L +V RK+VKQTVMT+VYGVT++GAR+QI
Sbjct: 965 THVADMVELKIKQDIETGNKY------AEMLQGKVSRKVVKQTVMTTVYGVTFVGAREQI 1018
Query: 826 KRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKII-------- 877
+R+LK+RG + E++GAS Y AK + ++G++F A+ I +WL CA++I
Sbjct: 1019 ERQLKDRG-DIAAHEVWGASAYLAKCVIASIGDLFSGAKAIQTWLTVCARLIAKSIPKER 1077
Query: 878 --------------ASENQPVRW------TTPLGLPVVQPYRKLGRH-------TVKTSL 910
A+E W T P+ +L + T L
Sbjct: 1078 IDAAIEENIRREMKAAEKAEKAWKDVDKTITRFKQARALPFSRLPKEQMTSVVWTTPLGL 1137
Query: 911 QILTLQRETEKVMV--------------------KRQRTAFPPNFVHSLDGSHMMMTAVA 950
I+ R+T++ V +Q +AFPPNF+HSLD +HMM+TA+
Sbjct: 1138 PIVQPYRKTKRKQVMTSIQTVFISDPNAPSEVNTSKQASAFPPNFIHSLDATHMMLTALE 1197
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
C KAGLTFA VHDSYWTHA +++MN I+RE F+ L+E + E L F + + P
Sbjct: 1198 CNKAGLTFASVHDSYWTHAGSINKMNEIIRETFIALHESNVLERLRQEFLDRYKEYQIPL 1257
Query: 1011 LPERGDFDLREV 1022
+ R L +V
Sbjct: 1258 ISLRSQSMLAKV 1269
>gi|326484447|gb|EGE08457.1| DNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1375
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/798 (35%), Positives = 431/798 (54%), Gaps = 80/798 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+E ERC Y P+ + +A +T+ ++G + + G ++ IG A
Sbjct: 436 EESERCE-------YTPFLLAVGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRA 488
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK-KVTDLIKKQKLPAVRR 365
++ E I T+ EE N V + R+ KV + K +
Sbjct: 489 VKDEYIIET----------TRRSAIEEAQSENEVYYLNKTFRQMKVYNSTGKFR----SY 534
Query: 366 IVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTHA 419
+ K D P W K+G+ + +L TA I + P + + PAF H
Sbjct: 535 MQKHAKDQPPVHWPASTEIKIGALLSSMLFSTAEIPTSHKDPITEKVTYAKE--PAFQH- 591
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHFF 478
V + KG G ++ + V++ L + + +++ ++PM+ P W ++G
Sbjct: 592 ---VYQLQKG--HNVGYVQLHEKVVEKLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLT 646
Query: 479 LPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
P+ V+RT H Q + + + L+ +++ L LG T W++N V V+ W+ G
Sbjct: 647 QPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGE 706
Query: 538 RLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+A++V N ++ EKP+ ED ++ + + HSQRC + ++ +AR
Sbjct: 707 EVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRADNKKMGNHSQRCYLNFQMEIARAY 766
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+E FY PHN+DFRGRAYP+ PY N +G+D CRG+L F+EGR LG+SGL WL+IHL+N+
Sbjct: 767 LNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNV 825
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
+ G DK S + R F +H++DI DSA+ L+G+RWWL+A DPFQCLA C+ L AL
Sbjct: 826 F--GFDKASFQEREQFAIDHVEDILDSANNGLKGKRWWLQAADPFQCLAACVELKNALSL 883
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P ++SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+ +A V I
Sbjct: 884 PDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPSDIYTAVAEHVKASI 943
Query: 777 QRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
DA+ DP AKL+ ++ RK+VKQTVMT+VYGVT+IGA Q++R++++
Sbjct: 944 ASDAKAGDPI-------AKLMDGKITRKVVKQTVMTNVYGVTFIGATRQVRRQIEDHYPE 996
Query: 836 MEEA-ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------- 880
+ E+ E+ + + ++ +AL MF A I WLG+CA +
Sbjct: 997 LAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRVTRSLNPSQIEEIRKELD 1056
Query: 881 -------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVK 925
N V WTTPL LPVVQPYR+ + TSLQ+ T++ R +V +
Sbjct: 1057 SPSKTDLSKKLKFNNSVIWTTPLRLPVVQPYREAKARQIPTSLQLCTIKDIRGANEVNRR 1116
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
+Q AFPPNF+HSLD +HMMM+A+ C + GLTF+ VHDS+WTHA D+D+MNR+LR+ FV
Sbjct: 1117 KQLQAFPPNFIHSLDATHMMMSAIKCDELGLTFSAVHDSFWTHAGDIDKMNRVLRDAFVR 1176
Query: 986 LYEMPIFENLLDSFQKSF 1003
++ I L F +
Sbjct: 1177 MHSDDIVGRLAAEFNARY 1194
>gi|326471406|gb|EGD95415.1| DNA-directed RNA polymerase 1A [Trichophyton tonsurans CBS 112818]
Length = 1375
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/798 (35%), Positives = 431/798 (54%), Gaps = 80/798 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+E ERC Y P+ + +A +T+ ++G + + G ++ IG A
Sbjct: 436 EESERCE-------YTPFLLAVGPSKLAAVTILSVLGSIGSSGIDKGIKLSSLFTNIGRA 488
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK-KVTDLIKKQKLPAVRR 365
++ E I T+ EE N V + R+ KV + K +
Sbjct: 489 VKDEYIIET----------TRRSAIEEAQSENEVYYLNKTFRQMKVYNSTGKFR----SY 534
Query: 366 IVKGQDDFKP--WGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTHA 419
+ K D P W K+G+ + +L TA I + P + + PAF H
Sbjct: 535 MQKHAKDQPPVHWPASTEIKIGALLSSMLFSTAEIPTSHKDPITEKVTYAKE--PAFQH- 591
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHFF 478
V + KG G ++ + V++ L + + +++ ++PM+ P W ++G
Sbjct: 592 ---VYQLQKG--HNVGYVQLHEKVVEKLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLT 646
Query: 479 LPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
P+ V+RT H Q + + + L+ +++ L LG T W++N V V+ W+ G
Sbjct: 647 QPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSGE 706
Query: 538 RLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+A++V N ++ EKP+ ED ++ + + HSQRC + ++ +AR
Sbjct: 707 EVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRADNKKMGNHSQRCYLNFQMEIARAY 766
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+E FY PHN+DFRGRAYP+ PY N +G+D CRG+L F+EGR LG+SGL WL+IHL+N+
Sbjct: 767 LNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSNV 825
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
+ G DK S + R F +H++DI DSA+ L+G+RWWL+A DPFQCLA C+ L AL
Sbjct: 826 F--GFDKASFQEREQFAIDHVEDILDSANNGLKGKRWWLQAADPFQCLAACVELKNALSL 883
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P ++SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+ +A V I
Sbjct: 884 PDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPSDIYTAVAEHVKASI 943
Query: 777 QRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
DA+ DP AKL+ ++ RK+VKQTVMT+VYGVT+IGA Q++R++++
Sbjct: 944 ASDAKAGDPI-------AKLMDGKITRKVVKQTVMTNVYGVTFIGATRQVRRQIEDHYPE 996
Query: 836 MEEA-ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------- 880
+ E+ E+ + + ++ +AL MF A I WLG+CA +
Sbjct: 997 LAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRVTRSLNPSQIEEIRKELD 1056
Query: 881 -------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVK 925
N V WTTPL LPVVQPYR+ + TSLQ+ T++ R +V +
Sbjct: 1057 SPSKTDLSKKLKFNNSVIWTTPLRLPVVQPYREAKARQIPTSLQLCTIKDIRGANEVNRR 1116
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
+Q AFPPNF+HSLD +HMMM+A+ C + GLTF+ VHDS+WTHA D+D+MNR+LR+ FV
Sbjct: 1117 KQLQAFPPNFIHSLDATHMMMSAIKCDELGLTFSAVHDSFWTHAGDIDKMNRVLRDAFVR 1176
Query: 986 LYEMPIFENLLDSFQKSF 1003
++ I L F +
Sbjct: 1177 MHSDDIVGRLAAEFNARY 1194
>gi|327305697|ref|XP_003237540.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
gi|326460538|gb|EGD85991.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
Length = 1375
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/799 (35%), Positives = 431/799 (53%), Gaps = 82/799 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+E ERC Y P+ + +A +T+ ++G + + G ++ IG A
Sbjct: 436 EESERCE-------YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRA 488
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK-KVTDLIKKQKLPAVRR 365
++ E I T+ EE N V + R+ KV + K R
Sbjct: 489 VKDEYIIET----------TRRSAIEEAQSENEVYYLNKTFRQMKVYNSTGK-----FRS 533
Query: 366 IVKGQDDFKP---WGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTH 418
++ +P W K+G+ + +L TA I + P + + PAF H
Sbjct: 534 YMQKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQH 591
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHF 477
V + KG G ++ + V++ L + + +++ ++PM+ P W ++G
Sbjct: 592 ----VYQLQKG--HNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFL 645
Query: 478 FLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG 536
P+ V+RT H Q + + + L+ +++ L LG T W++N V V+ W+ G
Sbjct: 646 TQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINRPVFDVMLEAWNSG 705
Query: 537 GRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
+A++V N ++ EKP+ ED ++ + + HSQRC + ++ +AR
Sbjct: 706 EEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRADNKKMGNHSQRCYLNFQMEIARA 765
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
+E FY PHN+DFRGRAYP+ PY N +G+D CRG+L F+EGR LG+SGL WL+IHL+N
Sbjct: 766 YLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLGESGLRWLRIHLSN 824
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
++ G DK S + R F +H++DI DSA+ L+G+RWWL+A DPFQCLA C+ L AL
Sbjct: 825 VF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKRWWLQAADPFQCLAACVELKNALS 882
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
P ++SH+PVHQDGSCNGLQHYAALG D +GA VNL ++P+D+Y+ +A V
Sbjct: 883 LPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPSDIYTAVAEHVKAS 942
Query: 776 IQRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
I DA+ DP AKL+ ++ RK+VKQTVMT+VYGVT+IGA Q++R++++
Sbjct: 943 IASDAKAGDPI-------AKLMDGKITRKVVKQTVMTNVYGVTFIGATRQVRRQIEDHYP 995
Query: 835 PMEEA-ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------------- 880
+ E+ E+ + + ++ +AL MF A I WLG+CA +
Sbjct: 996 ELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRVTRSLNPSQIDEIRKEL 1055
Query: 881 --------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMV 924
N V WTTPL LPVVQPYR+ + TSLQ+ T++ R +V
Sbjct: 1056 DSPSKTDLSKNLKFNNSVIWTTPLRLPVVQPYREAKARQIPTSLQLCTIKDIRGANEVNR 1115
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
++Q AFPPNF+HSLD +HMM++A+ C + GLTF+ VHDS+WTHA D+D+MNR+LR+ FV
Sbjct: 1116 RKQLQAFPPNFIHSLDATHMMLSAIKCDELGLTFSAVHDSFWTHAGDIDKMNRVLRDAFV 1175
Query: 985 ELYEMPIFENLLDSFQKSF 1003
++ I L F +
Sbjct: 1176 RMHSDDIVGRLAAEFNARY 1194
>gi|255730283|ref|XP_002550066.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
gi|240132023|gb|EER31581.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
Length = 1293
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 304/854 (35%), Positives = 445/854 (52%), Gaps = 85/854 (9%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +IE E A +++ D EQ+ +L K L W + + I KE E
Sbjct: 378 RQKQIEIRGIEGAKEKWKH---DFEEQQKRGDLNLTKGLNAQCYEWVQEMVPIIQKELEA 434
Query: 252 CR-----------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
C+ + YAP+F ++ + AVIT+ +L+ L TGG R +A
Sbjct: 435 CKELLNDGDKASDAKSERALYAPFFIKVDPEKAAVITILELLKLHSTGGVVNGFRAYKAV 494
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
+G AIE E R++ +++ K + +KN +L+ + + IKK
Sbjct: 495 VGVGKAIEGEFRMNLQVQQENKLSSSKNN--------------SPRLKNLIRETIKKD-- 538
Query: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHAL 420
+D+ W R++VG ++ L + ++ D+ PAF H +
Sbjct: 539 ---------EDEIPEWDNVTRSRVGGVLVSALMTVSKVRVVKKTPEGVIKDLHPAFYHGV 589
Query: 421 RTVSKETKGGSKKYGVIECNPLVLKGLERT--ARHMVIPYMPMLVPPVKWTGYDKGAHFF 478
+ + G ++ GVI+ + + K L T A + Y+PML+ P WT + G F
Sbjct: 590 QFI------GGQRVGVIKVHAEISKLLTGTSFAESVQPQYLPMLIRPKPWTSFHGGGSLF 643
Query: 479 LPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
S ++R A + VK K+ L+ VF+ L+ LGNT W VN RV V+ W+ G
Sbjct: 644 SKSPLVRMKDAPETEAYVKAASKRGNLDQVFDGLNVLGNTAWTVNKRVFDVISHYWNKGE 703
Query: 538 RLADLVD-RNDVPLPEK--PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
+ + LPEK + + +A+L + +++ R SQRCD KL +AR
Sbjct: 704 EFLSIPPVMEEARLPEKLPADADPQAKLDNSIALYKGLREFAGNR-SQRCDYNYKLEIAR 762
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
E Y+PHN+DFRGRAYP+ P+ NHLG DL R + F EG+ LG+ GL WLK+ LA
Sbjct: 763 GFIGER-LYFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWEGKQLGEEGLRWLKVQLA 821
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
N+Y GVDK S +GR+ F +++++++ SA P WW +AE P+Q L+VC L EA
Sbjct: 822 NVY--GVDKESIDGRVKFIDDNIENVIASAKDPYAPDAWWQRAEKPWQALSVCFELGEAY 879
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
+ P F+SH+PVHQDG+CNGLQHYAALG D GA VNL E+P DVYS +A V
Sbjct: 880 QLDDPTKFVSHLPVHQDGTCNGLQHYAALGGDIEGANQVNLNPAERPQDVYSYVARLVEK 939
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
++ DA + AKLL +++ RK+VKQTVMT+VYGVT++GA QIK+++
Sbjct: 940 RVREDAANGNEI------AKLLQNEIKRKVVKQTVMTNVYGVTFVGAIQQIKKQISHLVP 993
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-------------N 881
A L+ Y A ++ E+F+ A I WL E A+ I +
Sbjct: 994 EDNSAHLYAR--YLANQVFISIRELFENAHLIQDWLTESARRITKSVSLDFGETDHDIHS 1051
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQI--LTLQRETEKVMVKRQRTAFPPNFVHSL 939
V WTTPLGLP VQPYR V TS+Q +T T +V ++Q FPPNFVHSL
Sbjct: 1052 SSVIWTTPLGLPCVQPYRIHKYRQVNTSVQSIKITAPSGTSQVDSRKQVAGFPPNFVHSL 1111
Query: 940 DGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF----ENL 995
D +HM+MTA C GL FA VHDS+WTHA +V MN+++R++FV+L+ + E
Sbjct: 1112 DATHMLMTATQCGHEGLNFASVHDSFWTHAANVPIMNKLIRQEFVKLHTTDLVSLLKEEF 1171
Query: 996 LDSFQKSFPKLVFP 1009
L+ ++ S+ + P
Sbjct: 1172 LERYKGSYQFVRIP 1185
>gi|301776278|ref|XP_002923551.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 1228
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 278/690 (40%), Positives = 393/690 (56%), Gaps = 53/690 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ E+L + ++ P + + P H S +
Sbjct: 559 QPWPLPVLVQLGKKLAEVLVEV--VRMPGSLVTPQGSCTLIPVLYHVYSFRS------FR 610
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
+ G+++ +P + L A H + +PML PP+ W GA P+ +MR+
Sbjct: 611 QIGILKPHPAFTELLAVAAEHTLTFEAAEVPMLCPPLPWMSPHTGAFLLSPTKLMRSLEG 670
Query: 490 KQQRDTV------KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLAD 541
Q + P +L +AL LGN WRVN RVL ++ +++ G RL
Sbjct: 671 TMQHQRLLPPPPPPPPPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFTAKGCPRLGV 730
Query: 542 LVDRNDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
++ P P P + AQ + + +V K RE HS R D +LS+A+ ++D
Sbjct: 731 PAPPSEAPRPPDGRLPPSASSAQKAEVRREVARCLKVAREMHSLRSDALYRLSLAQHLRD 790
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL NL
Sbjct: 791 RV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL-- 847
Query: 659 GGVDKLSHE---GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
G+ K HE RL F + +DDI DSAD+P+ GR+WW++A++P+Q LA C+ + A+R
Sbjct: 848 TGLKK--HEPLRARLLFADEVMDDILDSADRPMTGRKWWMEADEPWQALACCMEIARAVR 905
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
++ P ++SH PVHQDGSCNGLQHYAALGRD++GAA+VNL+ + P DVYSG+AA+V V
Sbjct: 906 TADPTAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLLPSDLPQDVYSGVAAQVEVF 965
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
++DA+R V A++L + RK+VKQTVMT VYGVT G R QI+RRL+E
Sbjct: 966 RRQDAERGVRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNF 1019
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
+E ++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+
Sbjct: 1020 PQEF-VWEASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLISHAGSAVEWVTPLGIPVI 1078
Query: 896 QPYRKLGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
QPY + + + +Q LT + T+K +Q+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1079 QPYHQDSKVLISGGIQSLTFSQSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCY 1138
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF--------- 1003
+ GLTF VHD +WTHA DV+ MN++ RE+FV+L+ PI NL K F
Sbjct: 1139 RKGLTFVSVHDCFWTHAADVEVMNQVCREQFVQLHSQPILHNLSRFLVKRFCSGHSKNVW 1198
Query: 1004 -PKL--VFPPLPERGDFDLREVLGSPYFFN 1030
KL +P+ G FDL +V S YFF+
Sbjct: 1199 LGKLQDTLKSVPKTGAFDLEQVKHSTYFFS 1228
>gi|344307837|ref|XP_003422585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Loxodonta
africana]
Length = 1234
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/691 (40%), Positives = 391/691 (56%), Gaps = 68/691 (9%)
Query: 383 KVGSRVIELLTQTAY----IQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGSKKYGV 436
++G ++ E+L + + + +PA + A P + P H + R+V ++ G+
Sbjct: 569 QLGKQLAEVLVRAVHMPRNLGAPAGKGAGTEP-LIPVLYHVYSFRSV--------RQIGI 619
Query: 437 IECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAKQQ 492
++ +P + L A + +PML PP+ WT GA P+ +MR G
Sbjct: 620 LKPHPAFSQLLAAAAEPTLTFEAAEVPMLCPPLPWTSPHSGAFLLSPAKLMRAVEGTMLH 679
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE 552
+ ++ P L F+AL LGN WRVN RVL ++ ++ G R VP P
Sbjct: 680 QQRLEHCPPAALHGAFDALTQLGNCAWRVNGRVLDLVLELFHAHG-----CTRLGVPPPA 734
Query: 553 KPETEDE-------------AQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
A+LR+ +V K RE S R D +LS+A+ ++
Sbjct: 735 SDAPCPPARRPPPGTPPARLAELRR---EVARCLKAARELRSLRADALYRLSLAQHLRHH 791
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+L+HLGSDL R +LEFA+G LG GL WLK+HL NL G
Sbjct: 792 GAFWLPHNMDFRGRTYPCPPHLSHLGSDLARALLEFAQGCPLGPHGLDWLKLHLVNL-TG 850
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ S + RLAF + LD++ DSAD+P+ GR+WW++A++P+Q LA C+ L ALRS P
Sbjct: 851 LKKRESLQARLAFADQVLDEVLDSADRPMTGRKWWMEADEPWQTLACCMELARALRSPDP 910
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
+F+SH PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 911 TSFVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYSGVAAQVEVFRRQD 970
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
A++ V A++L V RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 971 AEQGVRV------AQVLEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELPDFPQEF 1024
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF A R I WL E A++I+ V W TPLG+P++QPY
Sbjct: 1025 -VWEASHYLVRQVFNSLQEMFSATRAIQHWLTESARLISHTGSAVEWVTPLGIPIIQPYH 1083
Query: 900 KLGRHTVKTSLQILTLQRETEKVM---VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
++ + +K +Q +T ++ +Q+ FPPNF+HSLD SHMM+TA+ C + GL
Sbjct: 1084 RISKFLIKGGIQSMTFNHSSDSSQRPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGL 1143
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF---PKL------- 1006
TF VHD +WTHA DV MN++ RE+FV L+ PI +L K F P+
Sbjct: 1144 TFVSVHDCFWTHAADVPVMNQVCREQFVRLHSQPILRDLSRFLVKRFCSAPRSQNLSKNA 1203
Query: 1007 -------VFPPLPERGDFDLREVLGSPYFFN 1030
LPE GDFDL +V S YFF+
Sbjct: 1204 QTRKLFETLLALPETGDFDLEQVKQSTYFFS 1234
>gi|317136824|ref|XP_001727312.2| DNA-dependent RNA polymerase family protein [Aspergillus oryzae
RIB40]
Length = 1648
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 316/879 (35%), Positives = 452/879 (51%), Gaps = 93/879 (10%)
Query: 189 YRMLKMRQVKIET-----EAWEKAANEYRELLMDMCE--QKLAPNLPYMKSLFLGWFEPL 241
Y L+ RQ++ ++ E W + + ++ +DM +KL M +G +
Sbjct: 623 YNQLRQRQLETDSIRTSLERWRQEFTQMQKSGLDMTGGGKKLGT---IMNQWHMGLVSRI 679
Query: 242 RDAIAKEQE------RCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRAR 295
++ + E R K + Y Y L + +A +T+ ++ GG +
Sbjct: 680 QEELKLVDEAEANPIRTFEQKERYDYGVYLRSLDPERLAALTILAVISTFSRGGMEKGIK 739
Query: 296 VVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLI 355
V A IG ++ E+ E T KK +T GD + LR+ +
Sbjct: 740 VSAIATGIGKDLQDEL----IAEMTLKKQQT-------GDARRL-----KALREILAGRK 783
Query: 356 KKQKLPAVRRIV---KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
KK + ++IV + +D W +AKVG+ ++ L + + I
Sbjct: 784 KKDGRASWQKIVHDFEKEDPAAIWPPRVKAKVGAVLMSFLFDVGKVPVLTEHPRTDKKTI 843
Query: 413 F--PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP-YMPMLVPPVKWT 469
PAF H+ + KK G + +P V++ + R V+ +PM+ P W
Sbjct: 844 VMQPAFQHSYQI------NWGKKSGYVHLHPEVVQIVAREPTADVLGRQLPMICKPKPWN 897
Query: 470 GYDKGAHFFLPSYVMR-THGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLS 527
G G +F S ++R T G Q +K + LE V E L+ LG T WR+N V
Sbjct: 898 GPKDGGYFIYQSSIVRVTPGETLQPSYIKAAMENNGLEQVREGLNILGRTGWRINRDVFE 957
Query: 528 VLDRIWSCGGRLADLVDRNDVPLPEKPETEDE--AQLRKWQWKVRNVKKENRERHSQRCD 585
V+ W+ G +A L N P +E A +KW +R ++ HS RC
Sbjct: 958 VMLEAWNSGEAIASLAPLNPDLPPPPKPAPEEGLAAEKKWDNAMREIENRRSGMHSNRCF 1017
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+L VAR +++ FY PHN+DFRGRAYP+ PYLN +G+D RG+L F+E + LG G
Sbjct: 1018 QNFQLEVARAYRNDT-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGARG 1076
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
L WLKI +ANL G DK S R +T +HLD++ DSA+K L GRRWWL AEDP+QCLA
Sbjct: 1077 LRWLKIQIANL--AGFDKASLSEREQWTMDHLDEVLDSANKGLHGRRWWLDAEDPWQCLA 1134
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C L AL+ P + S +P+HQDGSCNGLQHYAALG D +GA VNL ++P+DVY
Sbjct: 1135 ACCELRNALQHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDKVGAQQVNLEPSDRPSDVY 1194
Query: 766 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
SG+A V + R+A+ + AKLL ++ RK+VKQTVMT+VYGVT++GA Q+
Sbjct: 1195 SGVAEFVKEAVAREAKEGIPI------AKLLDGKITRKIVKQTVMTNVYGVTFMGAMKQV 1248
Query: 826 KRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK---------- 875
+++L + + + G S Y A+ ALG MF A I WLG+CA
Sbjct: 1249 RKQLVDHYPELSADDTKGGSLYIARKIFEALGTMFNGAHEIQYWLGDCASRITQSLSPEQ 1308
Query: 876 -----------------IIASENQP-------VRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
+I N P V WTTPLGLPVVQPYR V+T+LQ
Sbjct: 1309 IEEIAKEALSPTQSDGGLIRKANDPAQKFRSTVIWTTPLGLPVVQPYRVRKSRRVRTTLQ 1368
Query: 912 ILTL-QRETEKVMVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
L++ ++ V+ KR Q AFPPNF+HSLD +HMMM+A+AC +AGL+F+ VHDS+WTHA
Sbjct: 1369 DLSIVDMGSDDVVSKRKQLQAFPPNFIHSLDATHMMMSAIACDRAGLSFSAVHDSFWTHA 1428
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
CDVD MN ILRE FV ++ + + L F+ + K +F
Sbjct: 1429 CDVDSMNNILREAFVRMHSDDVVKRLAAEFEVRYGKNLF 1467
>gi|238488645|ref|XP_002375560.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
flavus NRRL3357]
gi|83770340|dbj|BAE60473.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697948|gb|EED54288.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
flavus NRRL3357]
gi|391866652|gb|EIT75920.1| DNA-directed RNA polymerase RPO41 [Aspergillus oryzae 3.042]
Length = 1375
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 316/879 (35%), Positives = 452/879 (51%), Gaps = 93/879 (10%)
Query: 189 YRMLKMRQVKIET-----EAWEKAANEYRELLMDMCE--QKLAPNLPYMKSLFLGWFEPL 241
Y L+ RQ++ ++ E W + + ++ +DM +KL M +G +
Sbjct: 350 YNQLRQRQLETDSIRTSLERWRQEFTQMQKSGLDMTGGGKKLGT---IMNQWHMGLVSRI 406
Query: 242 RDAIAKEQE------RCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRAR 295
++ + E R K + Y Y L + +A +T+ ++ GG +
Sbjct: 407 QEELKLVDEAEANPIRTFEQKERYDYGVYLRSLDPERLAALTILAVISTFSRGGMEKGIK 466
Query: 296 VVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLI 355
V A IG ++ E+ E T KK +T GD + LR+ +
Sbjct: 467 VSAIATGIGKDLQDEL----IAEMTLKKQQT-------GDARRL-----KALREILAGRK 510
Query: 356 KKQKLPAVRRIV---KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
KK + ++IV + +D W +AKVG+ ++ L + + I
Sbjct: 511 KKDGRASWQKIVHDFEKEDPAAIWPPRVKAKVGAVLMSFLFDVGKVPVLTEHPRTDKKTI 570
Query: 413 F--PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP-YMPMLVPPVKWT 469
PAF H+ + KK G + +P V++ + R V+ +PM+ P W
Sbjct: 571 VMQPAFQHSYQI------NWGKKSGYVHLHPEVVQIVAREPTADVLGRQLPMICKPKPWN 624
Query: 470 GYDKGAHFFLPSYVMR-THGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLS 527
G G +F S ++R T G Q +K + LE V E L+ LG T WR+N V
Sbjct: 625 GPKDGGYFIYQSSIVRVTPGETLQPSYIKAAMENNGLEQVREGLNILGRTGWRINRDVFE 684
Query: 528 VLDRIWSCGGRLADLVDRNDVPLPEKPETEDE--AQLRKWQWKVRNVKKENRERHSQRCD 585
V+ W+ G +A L N P +E A +KW +R ++ HS RC
Sbjct: 685 VMLEAWNSGEAIASLAPLNPDLPPPPKPAPEEGLAAEKKWDNAMREIENRRSGMHSNRCF 744
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+L VAR +++ FY PHN+DFRGRAYP+ PYLN +G+D RG+L F+E + LG G
Sbjct: 745 QNFQLEVARAYRNDT-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGARG 803
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
L WLKI +ANL G DK S R +T +HLD++ DSA+K L GRRWWL AEDP+QCLA
Sbjct: 804 LRWLKIQIANL--AGFDKASLSEREQWTMDHLDEVLDSANKGLHGRRWWLDAEDPWQCLA 861
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C L AL+ P + S +P+HQDGSCNGLQHYAALG D +GA VNL ++P+DVY
Sbjct: 862 ACCELRNALQHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDKVGAQQVNLEPSDRPSDVY 921
Query: 766 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
SG+A V + R+A+ + AKLL ++ RK+VKQTVMT+VYGVT++GA Q+
Sbjct: 922 SGVAEFVKEAVAREAKEGIPI------AKLLDGKITRKIVKQTVMTNVYGVTFMGAMKQV 975
Query: 826 KRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK---------- 875
+++L + + + G S Y A+ ALG MF A I WLG+CA
Sbjct: 976 RKQLVDHYPELSADDTKGGSLYIARKIFEALGTMFNGAHEIQYWLGDCASRITQSLSPEQ 1035
Query: 876 -----------------IIASENQP-------VRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
+I N P V WTTPLGLPVVQPYR V+T+LQ
Sbjct: 1036 IEEIAKEALSPTQSDGGLIRKANDPAQKFRSTVIWTTPLGLPVVQPYRVRKSRRVRTTLQ 1095
Query: 912 ILTL-QRETEKVMVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
L++ ++ V+ KR Q AFPPNF+HSLD +HMMM+A+AC +AGL+F+ VHDS+WTHA
Sbjct: 1096 DLSIVDMGSDDVVSKRKQLQAFPPNFIHSLDATHMMMSAIACDRAGLSFSAVHDSFWTHA 1155
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
CDVD MN ILRE FV ++ + + L F+ + K +F
Sbjct: 1156 CDVDSMNNILREAFVRMHSDDVVKRLAAEFEVRYGKNLF 1194
>gi|320582765|gb|EFW96982.1| mitochondrial RNA polymerase [Ogataea parapolymorpha DL-1]
Length = 1327
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 297/780 (38%), Positives = 428/780 (54%), Gaps = 55/780 (7%)
Query: 241 LRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
L D + ++ER K+ + PY L A+ T+ +++ ++ A V +
Sbjct: 452 LEDTSSFDKERY---SEKLKHGPYLTLLKPSKSAITTILEVIKTCVSSDLAHGAPVSKVV 508
Query: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRK--KVTDLIKKQ 358
IG A+E E + + L N+ + T E +K + K + LI++
Sbjct: 509 MAIGRAMELEFKAQRLLAADIDVNKNF--------RAIRKTPEFKKFVRGAKASQLIREA 560
Query: 359 KLPAVRRIVKGQD-DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ--LADAPPDIFPA 415
+ A GQ F W D+R +VGS ++ LL Q A + D + PA
Sbjct: 561 EKRA--ESSAGQSIAFVSWDTDSRCRVGSVMLSLLLQVAKVDVEGTDPITGDTKTALAPA 618
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVLK--GLERTARHMVIPYMPMLVPPVKWTGYDK 473
F H + + + GSK GVI+ N G ER + +MPM+ P WT ++
Sbjct: 619 FYH-----TYDYQNGSK-VGVIKLNTKFASKLGTERVDNTLQPHFMPMIAKPRPWTTHND 672
Query: 474 GAHFFLPSYVMRTHGAKQQRDTVKRTP-KKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
G ++ S V++ + +Q + K +++ V +AL+ LG+T W VN VL V+ ++
Sbjct: 673 GGYYLKKSAVLKAKNSPEQAAYARTAAIKGKMDTVLQALNNLGSTAWTVNKEVLKVMIQV 732
Query: 533 WSCGGRLADLVD-RNDVPLPEKPETEDE-AQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
W+ G D+ R + LP +P T+ + K + K + + +E + S RCD KL
Sbjct: 733 WNTGEEFLDIPKFRETLNLPPQPSTDASLEEFFKHKRKCQLICREFSKDRSMRCDTNYKL 792
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+AR E Y+PH++DFRGRAYPM PY NHLG+DL RG+L+F G+ LG+ GL WLK
Sbjct: 793 EIARAYVGER-IYFPHSLDFRGRAYPMPPYFNHLGNDLSRGLLKFWNGKQLGEEGLRWLK 851
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IH+ NL G DKLS R+ + ++HLD+IF+SA PL G R W+ A+ P+Q LA + L
Sbjct: 852 IHVCNLM--GFDKLSLNDRVKYVDDHLDEIFESARDPLGGSRMWVNADKPWQFLASAMEL 909
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
A R P FISH PVHQDG+CNGLQHYAALG D GA VNLV +KP+DVY+ +A
Sbjct: 910 ERAYRLPDPTQFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPADKPSDVYTHVAH 969
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
V +Q D + + AKL+ + RKLVKQTVMTSVYGVTY+GAR QI +RLK
Sbjct: 970 LVEKSVQEDLE------AGSEEAKLVKDVISRKLVKQTVMTSVYGVTYVGARAQITKRLK 1023
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------- 882
+ +E + +S Y + A+ E+F A I WL AK I+ +
Sbjct: 1024 D--IEFDEKYISMSSKYLTQKVFKAIRELFDNAHAIQDWLIIAAKRISKSVRTDIDIPQD 1081
Query: 883 -----PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL--QRETEKVMVKRQRTAFPPNF 935
V WTTP+GLPVVQPYR+ V+T++Q +T+ + ++V ++Q + FPPNF
Sbjct: 1082 TDYMCSVIWTTPMGLPVVQPYREYKGRPVQTTMQTITIVDPYQVKRVDGRKQASGFPPNF 1141
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+HSLD +HM+++A C +AGL FA VHDSYWTHA DV MN+ILRE+F+ L+ + E L
Sbjct: 1142 IHSLDATHMVLSANKCSEAGLVFASVHDSYWTHASDVSVMNKILREQFIHLHTNNLIEKL 1201
>gi|344304552|gb|EGW34784.1| hypothetical protein SPAPADRAFT_47865 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1287
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 301/881 (34%), Positives = 457/881 (51%), Gaps = 96/881 (10%)
Query: 156 ELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELL 215
E+ Q ++ +EQR+ N + N + + +++R V+ E W+ E ++
Sbjct: 347 EMYQLLETQEQRDQFNHALAN-------FNLDRQKQMEIRGVEGAKEKWKHEYEETKKRD 399
Query: 216 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERC-------------RMAKHKVAYA 262
M + L L W++ L + KE++ C K + YA
Sbjct: 400 SIMSTKNLNAQL-------YEWYQKLVPLLQKERQECLDLIDDKATNQKSSENKERAVYA 452
Query: 263 PYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKK 322
P+F ++ + A+ T+ ++M L TGG R + A +G A+E + K +K K
Sbjct: 453 PFFVKIDPEKAAMTTILEVMKLQSTGGISNGMRALTALQSVGKALEYDYITQKLSKKDLK 512
Query: 323 KNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG--QDDFKPWGQDA 380
+ +T + K + L+ L VR +G +DF W QD
Sbjct: 513 RTQTS--------------------KHKGSRLL----LNLVRNAAEGDPNEDFG-WSQDI 547
Query: 381 RAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECN 440
++G+ + L + A ++ + AF H+++ + G ++ G I+ +
Sbjct: 548 SIRLGAVFVSFLMEVAKVRVSRHTVETEQS----AFFHSIQYI------GGQRIGAIKLH 597
Query: 441 PLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR 498
++K + R++ + +MPM V P W GY P ++R + + VK
Sbjct: 598 SDLVKSINRSSLDSCVQPQHMPMPVKPKDWDGYYGRGQVMSP--LVRVRDSPETAAYVKT 655
Query: 499 TPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP-LPEKPET 556
+ L+ V+ L+ LGNT W VN + V+ W+ G D+ D P LP KPE
Sbjct: 656 AARNGNLDQVYAGLNVLGNTAWTVNKDIFKVISHYWNTGKEFLDIPGVLDKPILPPKPER 715
Query: 557 EDEAQLR-KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
D+ ++ K++ V +K E SQRCD KL +AR E+ Y+PHN+DFRGRAY
Sbjct: 716 SDDPSIKYKYRKLVTQLKSEFSTMRSQRCDANYKLEIARAFIGEK-LYFPHNLDFRGRAY 774
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
P+ P+ NHLG D+ R + F +G+ LG+ GL WLKI LANLY G DK + R+ F E+
Sbjct: 775 PISPHFNHLGGDMTRSLFLFWDGKELGERGLRWLKIQLANLY--GFDKAPFDERVKFVED 832
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCN 735
+L ++F+SA P WW KA+ P+Q L VC +L A + P ++SH+ VHQDG+CN
Sbjct: 833 NLQNVFESAKNPYSEDAWWKKADKPWQALGVCFDLRRAYKLPDPTKYVSHMAVHQDGTCN 892
Query: 736 GLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKL 795
GLQHYAALG D GA VNL ++P DVY+ +A V ++++DAQ++ A
Sbjct: 893 GLQHYAALGGDLEGAQQVNLARADRPQDVYAYVAGIVRELLEKDAQKNNKY------ALF 946
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTA 855
L +++RK+VK TVMT+VYGVTYIGA Q++++L++ + L + Y A
Sbjct: 947 LKDKINRKVVKPTVMTNVYGVTYIGALAQVRKQLEDYFPDNQRDSLQEHARYLTTHVFAA 1006
Query: 856 LGEMFQAARGIMSWLGECAKIIA---------SEN-----QPVRWTTPLGLPVVQPYRKL 901
+ ++F+ A I WLGE A+ I+ S+N V WTTPL LP VQPYRK
Sbjct: 1007 IRQLFENAHLIQDWLGESARRISKSVSIDYKESDNVALHSSAVIWTTPLNLPCVQPYRKG 1066
Query: 902 GRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFA 959
++KT++Q LT+ R MV ++Q FPPNFVHSLD +HMMMTA AC + GL FA
Sbjct: 1067 TSESLKTAVQTLTINRIDGAGMVDGRKQVAGFPPNFVHSLDATHMMMTAAACGERGLKFA 1126
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
VHDS+WTHA DVD MN +RE+FV+L+ + L + F+
Sbjct: 1127 SVHDSFWTHAADVDTMNEQIREQFVKLHSSNLISLLKEEFE 1167
>gi|119481989|ref|XP_001261023.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
gi|119409177|gb|EAW19126.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
Length = 1376
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 300/809 (37%), Positives = 427/809 (52%), Gaps = 87/809 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+++ERC Y Y L D +A +T+ +M GG +V IG
Sbjct: 423 EQKERCE-------YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKD 475
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL--RKKVTDLIKKQKLPAVR 364
++ E+ + + KNET G +S + +E L RKK + K A+
Sbjct: 476 LQDEL-----IAEAALKNET-------GADSRRLKALKELLAGRKKKDG---RAKWHALV 520
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQTA----YIQSPADQLADAPPDIFPAFTHAL 420
+ ++ +D W AKVG+ ++ LL + I+ P + + PAF HA
Sbjct: 521 QKMQQEDATIMWSPRVTAKVGAVLMSLLFEVGKAPVTIEDP--ETKKKTVTMQPAFQHAY 578
Query: 421 RTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYDKGAHFF 478
+ ++ G + +P +++ + E TA ++ ++PM+ P W G G
Sbjct: 579 QIT------WGRRTGYLHLHPAIVQIIAKEPTA-DLLGRHLPMVCKPRPWKGMKDGGFLL 631
Query: 479 LPSYVMRTHGAKQQRDTVKRTP--KKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG 536
S ++RT + + T +T LE + LD LG+T W +N VL+V+ W+ G
Sbjct: 632 YQSDIVRTTPGESLQPTYIKTALENNGLEDIRRGLDNLGSTGWTINRDVLNVMLEAWNSG 691
Query: 537 GRLADLVDRNDVPLPEKPETEDEA--QLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
+A+L + ++W VR V+ HS RC ++ +AR
Sbjct: 692 EAVANLAPLEPDLPLPPKPAPEAGYHAEKEWDTLVREVENRRSGLHSMRCFQNFQMELAR 751
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
++ FY PHN+DFRGRAYP+ PYLN +G+D RG+L F+E + LG SGL WLKI +A
Sbjct: 752 AYRNVT-FYLPHNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIA 810
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NL G DK S R FT +HLDD+ DSADK L GRRWWLKAEDP+QCLA C L AL
Sbjct: 811 NL--SGFDKASMSEREQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNAL 868
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
R P + S +P+HQDGSCNGLQHYAALG D++GA VNL ++P+DVY+G+A V
Sbjct: 869 RHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVAEFVKQ 928
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ R+A + + AK+L ++ RK+VKQTVMT+VYGVT++GA Q++++L +
Sbjct: 929 EVAREAAQGHPI------AKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQLIDHYP 982
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP----------- 883
+ + S Y A+ ALG MF A I WLG+CA I + P
Sbjct: 983 DLSYDDKKNGSLYIARKIFEALGTMFNGAHEIQHWLGDCASRITTSLSPEQIEQIAKEAL 1042
Query: 884 ----------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL-QRETE 920
V WTTPLGLPVVQPYR + T+LQ L++ +E
Sbjct: 1043 TPSSSGGSAVKLKDPSERFRSTVIWTTPLGLPVVQPYRVRKARRITTTLQDLSIVDTNSE 1102
Query: 921 KVMVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRIL 979
V+ KR Q AFPPNF+HSLD +HM+++A AC +AGLTF+ VHDS+WTHACDVD MN+IL
Sbjct: 1103 DVVSKRKQLQAFPPNFIHSLDATHMILSANACNQAGLTFSAVHDSFWTHACDVDSMNQIL 1162
Query: 980 REKFVELYEMPIFENLLDSFQKSFPKLVF 1008
RE FV ++ I L FQ + + +F
Sbjct: 1163 REAFVRMHSDDIIRRLASEFQVRYGQNLF 1191
>gi|121716567|ref|XP_001275845.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
gi|119404002|gb|EAW14419.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
Length = 1375
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 306/875 (34%), Positives = 454/875 (51%), Gaps = 93/875 (10%)
Query: 193 KMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPY----MKSLFLGWFEPLRDAIAKE 248
++RQ ++E+++ A + +R+ D QK+ ++ + S+ W L I +E
Sbjct: 350 ELRQRQLESDSIRSAMDRWRQEFDD--RQKMGLDVTAGGKKLGSVMNQWHSSLVARIKEE 407
Query: 249 QE----------RCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298
+ R R K + Y Y L D +A +T+ +M GG +V
Sbjct: 408 LDLVAEAEANPIRTRDQKGRCEYGVYLRSLDTDTLAALTILAVMSTFSRGGMEKGLKVSA 467
Query: 299 AACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQ 358
IG ++ E+ L+K + + K +E Q+ R + ++ K
Sbjct: 468 VVSTIGKDLQDELIAEAALKKQAGADARRAKALKE----MLAQRRQKDGRTRWQAMVYK- 522
Query: 359 KLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA----YIQSPADQLADAPPDIFP 414
++ +D W AKVG+ ++ LL + ++ P ++ + P
Sbjct: 523 --------MQQEDSTIVWPPRVIAKVGAVLMSLLFEVGKAPVTMEDPENKKKMVT--MQP 572
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYD 472
AF HA + ++ G + +P ++K + E TA ++ ++PM+ P W G
Sbjct: 573 AFQHAYQIT------WGRRTGYLHLHPAIVKIIAKEPTA-DLLGRHLPMVCKPRPWKGSK 625
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQ--LEPVFEALDTLGNTKWRVNNRVLSVLD 530
G S ++RT + + T +T + LE + LD LG+T W VN VL+V+
Sbjct: 626 DGGFLLYQSDLVRTTPGESLQPTYIKTALENNGLEEIRRGLDNLGSTGWVVNRDVLNVML 685
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETED---EAQLRKWQWKVRNVKKENRERHSQRCDIE 587
W+ G A++ + EA+ ++W VR+++ HS RC
Sbjct: 686 EAWNSGEATANIAPLEPDLPLPPKPAPEAGYEAE-KEWDVLVRDIENRRSGLHSMRCFQN 744
Query: 588 LKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH 647
++ +AR ++ FY PHN+DFRGRAYP+ PYLN +G+D RG+L F+E + LG SGL
Sbjct: 745 FQMELARAYRNST-FYLPHNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLK 803
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC 707
WLKI +ANL G DK S R F +HLDD+ DSADK L G+RWWLKAEDP+QCLA C
Sbjct: 804 WLKIQIANL--SGFDKASLSEREQFAMDHLDDVLDSADKGLHGKRWWLKAEDPWQCLAAC 861
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
L ALR P + S +P+HQDGSCNGLQHYAALG D++GA VNL ++P+DVY+G
Sbjct: 862 CELRNALRHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDSIGAQQVNLEPSDRPSDVYTG 921
Query: 768 IAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR 827
+A V + RDA + + AK+L ++ RK+VKQTVMT+VYGVT++GA Q+++
Sbjct: 922 VAEFVKKAVARDAAQGNST------AKILEGKITRKIVKQTVMTNVYGVTFMGAMRQVRK 975
Query: 828 RLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP---- 883
+L + + + + Y A+ ALG MF A I WLG+CA I + P
Sbjct: 976 QLIDHYPELSYEDKKQGALYIARKIFEALGSMFNGAHEIQHWLGDCASRITTSLAPEQIE 1035
Query: 884 ----------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
V WTTPLGLPVVQPYR ++T+LQ L++
Sbjct: 1036 QIAKDALTPSKETTTTKVKDPSEKFRSTVIWTTPLGLPVVQPYRVRKARRIQTTLQDLSI 1095
Query: 916 -QRETEKVMVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
+E V+ KR Q AFPPNF+HSLD +HM+++A AC +AGLTF+ VHDS+WTHACDVD
Sbjct: 1096 VDTNSEDVVSKRKQLQAFPPNFIHSLDATHMILSANACSRAGLTFSAVHDSFWTHACDVD 1155
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
MN ILRE FV ++ I + L FQ + + +F
Sbjct: 1156 LMNDILREAFVRMHSDDIIKRLASEFQVRYGQNLF 1190
>gi|149034663|gb|EDL89400.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 1164
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/646 (41%), Positives = 377/646 (58%), Gaps = 36/646 (5%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A + P H S +
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSFRS------YR 585
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + ++R P QL +AL LGN WRVN R+L ++ +I+ G RL R+
Sbjct: 646 TTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRLGVPPPRS 705
Query: 547 DVPLPEKPETE------DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P P K + +++LRK ++ K RE HS R + +LS+A+ ++D
Sbjct: 706 EAPRPAKHQLPPGSTPVHKSELRK---ELARCLKAAREMHSLRSEALYRLSLAQHLRDRV 762
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 763 -FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 820
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S RLAF + + +I DSAD PL G++WW+KA++P+Q LA C+ + +A+RS P
Sbjct: 821 RKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDPT 880
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V + Q+DA
Sbjct: 881 AYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELRQQDA 940
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
+ V A+ L V RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 941 KEGLQV------AQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF- 993
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY +
Sbjct: 994 VWEASHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPIIQPYHR 1053
Query: 901 LGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ VK LQ +T +++K +Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1054 ESKIQVKGGLQSITFTSSVDDSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1113
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F
Sbjct: 1114 FVSVHDCFWTHAADIPMMNEVCREQFVRLHSEPILEDLAKFLEKRF 1159
>gi|348504337|ref|XP_003439718.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Oreochromis niloticus]
Length = 1352
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 264/645 (40%), Positives = 383/645 (59%), Gaps = 55/645 (8%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIF-PAFTHALRTVSKE--TKGGSK 432
W ++G+ +++++ + I S DI PA+ L + T ++
Sbjct: 666 WPYIVTLELGTYMVDMMVKNLKINS----------DILNPAYDRKLIPILYHMYTFRSTR 715
Query: 433 KYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
+ G I+ +P +L +++ A + + MPML PPV WT GA+ P+ +MRT
Sbjct: 716 QIGFIKPHP-ILTQMQQEAMETKLTFDSYVMPMLCPPVPWTSVKFGAYLLTPTKLMRTVD 774
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRND 547
GA Q + +++ + L ++++L+ LGN W++N +L ++ I++ G D+ D
Sbjct: 775 GATQHEELLEKC--QNLHAIYDSLNQLGNCAWKINKPLLDIIISIFNDRGS-----DKLD 827
Query: 548 VPLP--EKPE------------TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVA 593
+P P E P+ ++A +++ +V N KK+ E HS R D KLS+A
Sbjct: 828 IPPPLSEAPKIPHFNPQDPTYTASEKAHMKR---QVINAKKKCSEMHSLRMDALYKLSIA 884
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHL 653
M+DE F++PHN+DFRGR YP PY NHLGSD+ R IL FAEG+ LG GL WLKIHL
Sbjct: 885 NHMRDEI-FWFPHNMDFRGRTYPCPPYFNHLGSDVTRAILMFAEGKLLGPKGLDWLKIHL 943
Query: 654 ANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA 713
NL G + S +GRL + ++DI DSAD PL GR+WW+ A++P+Q LA C+ + A
Sbjct: 944 VNL-TGLKKRSSLQGRLEYANTIMEDILDSADNPLNGRKWWMNADEPWQALACCMEIANA 1002
Query: 714 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL 773
+RS P FIS+ PVHQDGSCNGLQHYAALGRD +GA +VNL+ + P DVYSG+A +V
Sbjct: 1003 VRSPDPTQFISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCDVPQDVYSGVAQQVE 1062
Query: 774 VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
+ RDA+ + A++L + RK+VKQTVMT VYGVT G R QI++RLKE
Sbjct: 1063 ELRARDAESGLKI------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEID 1116
Query: 834 APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLP 893
+E ++ AS Y + AL EMF R I WL E A++I+ V W TPLGLP
Sbjct: 1117 EFPKEF-VWDASHYLVRQVFNALKEMFTGTREIQDWLTESARLISKSGHTVEWVTPLGLP 1175
Query: 894 VVQPYRKLGRHTVKTSLQILTLQ---RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
++QPY + +K+++Q + L+ E+ +Q+ AFPPNF+HSLD +HMM+T++
Sbjct: 1176 IIQPYHRTRNQVLKSTMQHINLKISHDTKERPDTVKQKNAFPPNFIHSLDSTHMMLTSLY 1235
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
C +GLTF VHD +WTHA VD MN++ RE+FV L+ PI + L
Sbjct: 1236 CYSSGLTFVSVHDCFWTHALTVDTMNKVCREQFVALHSQPILQEL 1280
>gi|71002430|ref|XP_755896.1| mitochondrial DNA-directed RNA polymerase [Aspergillus fumigatus
Af293]
gi|66853534|gb|EAL93858.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus Af293]
Length = 1375
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 296/806 (36%), Positives = 424/806 (52%), Gaps = 82/806 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+++ERC Y Y L D +A +T+ +M GG +V IG
Sbjct: 423 EQKERCE-------YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKD 475
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL--RKKVTDLIKKQKLPAVR 364
++ E+ L+ +E G +S + +E L RKK + K A+
Sbjct: 476 LQDELIAEAALK------------NEAGTDSRRLKALKELLAGRKKKGG---RAKWHALV 520
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQT--AYIQSPADQLADAPPDIFPAFTHALRT 422
+ ++ +D W AK+G+ ++ LL + A + + + PAF HA +
Sbjct: 521 QKMQKEDATIMWSPRVTAKIGAVLMSLLFEVGKAPVTMEDPETKKKTVTMQPAFQHAYQI 580
Query: 423 VSKETKGGSKKYGVIECNPLVLK--GLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLP 480
++ G + +P +++ E TA ++ ++PM+ P W G G
Sbjct: 581 T------WGRRTGYLHLHPAIVQIVAKEPTA-DLLGRHLPMVCKPRPWKGMKDGGFLLYQ 633
Query: 481 SYVMRTHGAKQQRDTVKRTPKKQ--LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538
S ++RT + + T +T + LE + LD LG+T W +N VL+V+ W+ G
Sbjct: 634 SDIVRTTPGESLQPTYIKTALENNGLEDIRRGLDNLGSTGWTINREVLNVMLEAWNSGEA 693
Query: 539 LADLVDRNDVPLPEKPETEDEA--QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+A+L + ++W VR ++ HS RC ++ +AR
Sbjct: 694 VANLAPLEPDLPLPPKPAPEAGYHAEKEWDTLVREIENRRSGLHSMRCFQNFQMELARAY 753
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
++ FY PHN+DFRGRAYP+ PYLN +G+D RG+L F+E + LG SGL WLKI +ANL
Sbjct: 754 RNVT-FYLPHNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL 812
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
G DK S R FT +HLDD+ DSADK L GRRWWLKAEDP+QCLA C L ALR
Sbjct: 813 --SGFDKASMSEREQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRH 870
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P + S +P+HQDGSCNGLQHYAALG D++GA VNL ++P+DVY+G+A V +
Sbjct: 871 PDPTQYPSRLPIHQDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVAEFVKKEV 930
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
R+A + + AK+L ++ RK+VKQTVMT+VYGVT++GA Q++++L + +
Sbjct: 931 AREAAQGHPI------AKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQLIDHYPDL 984
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP------------- 883
+ S Y A+ ALG MF A I WLG+CA I + P
Sbjct: 985 SYEDKKNGSLYIARKIFEALGTMFNGAHEIQHWLGDCASRITTSLSPEQIEQIAKEALTP 1044
Query: 884 -------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL-QRETEKVM 923
V WTTPLGLPVVQPYR + T+LQ L++ +E V+
Sbjct: 1045 SSGRSAAKLKDPSEKFRSTVIWTTPLGLPVVQPYRVRKARRITTTLQDLSIVDTNSEDVV 1104
Query: 924 VKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREK 982
KR Q AFPPNF+HSLD +HM+M+A AC +AGLTF+ VHDS+WTHACDVD MN+ILRE
Sbjct: 1105 SKRKQLQAFPPNFIHSLDATHMIMSANACNQAGLTFSAVHDSFWTHACDVDTMNQILREA 1164
Query: 983 FVELYEMPIFENLLDSFQKSFPKLVF 1008
FV ++ I L FQ + + +F
Sbjct: 1165 FVRMHSDDIIRRLASEFQVRYGQNLF 1190
>gi|159129951|gb|EDP55065.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus A1163]
Length = 1376
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 296/807 (36%), Positives = 424/807 (52%), Gaps = 83/807 (10%)
Query: 247 KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDA 306
+++ERC Y Y L D +A +T+ +M GG +V IG
Sbjct: 423 EQKERCE-------YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKD 475
Query: 307 IEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL--RKKVTDLIKKQKLPAVR 364
++ E+ L+ +E G +S + +E L RKK + K A+
Sbjct: 476 LQDELIAEAALK------------NEAGTDSRRLKALKELLAGRKKKGG---RAKWHALV 520
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQT--AYIQSPADQLADAPPDIFPAFTHALRT 422
+ ++ +D W AK+G+ ++ LL + A + + + PAF HA +
Sbjct: 521 QKMQKEDATIMWSPRVTAKIGAVLMSLLFEVGKAPVTMEDPETKKKTVTMQPAFQHAYQI 580
Query: 423 VSKETKGGSKKYGVIECNPLVLK--GLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLP 480
++ G + +P +++ E TA ++ ++PM+ P W G G
Sbjct: 581 T------WGRRTGYLHLHPAIVQIVAKEPTA-DLLGRHLPMVCKPRPWKGMKDGGFLLYQ 633
Query: 481 SYVMRTHGAKQQRDTVKRTPKKQ--LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538
S ++RT + + T +T + LE + LD LG+T W +N VL+V+ W+ G
Sbjct: 634 SDIVRTTPGESLQPTYIKTALENNGLEDIRRGLDNLGSTGWTINREVLNVMLEAWNSGEA 693
Query: 539 LADLVDRNDVPLPEKPETEDEA--QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+A+L + ++W VR ++ HS RC ++ +AR
Sbjct: 694 VANLAPLEPDLPLPPKPAPEAGYHAEKEWDTLVREIENRRSGLHSMRCFQNFQMELARAY 753
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
++ FY PHN+DFRGRAYP+ PYLN +G+D RG+L F+E + LG SGL WLKI +ANL
Sbjct: 754 RNVT-FYLPHNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL 812
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
G DK S R FT +HLDD+ DSADK L GRRWWLKAEDP+QCLA C L ALR
Sbjct: 813 --SGFDKASMSEREQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRH 870
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P + S +P+HQDGSCNGLQHYAALG D++GA VNL ++P+DVY+G+A V +
Sbjct: 871 PDPTQYPSRLPIHQDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVAEFVKKEV 930
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
R+A + + AK+L ++ RK+VKQTVMT+VYGVT++GA Q++++L + +
Sbjct: 931 AREAAQGHPI------AKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQLIDHYPDL 984
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP------------- 883
+ S Y A+ ALG MF A I WLG+CA I + P
Sbjct: 985 SYEDKKNGSLYIARKIFEALGTMFNGAHEIQHWLGDCASRITTSLSPEQIEQIAKEALTP 1044
Query: 884 --------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL-QRETEKV 922
V WTTPLGLPVVQPYR + T+LQ L++ +E V
Sbjct: 1045 SSSGRSAAKLKDPSEKFRSTVIWTTPLGLPVVQPYRVRKARRITTTLQDLSIVDTNSEDV 1104
Query: 923 MVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
+ KR Q AFPPNF+HSLD +HM+M+A AC +AGLTF+ VHDS+WTHACDVD MN+ILRE
Sbjct: 1105 VSKRKQLQAFPPNFIHSLDATHMIMSANACNQAGLTFSAVHDSFWTHACDVDTMNQILRE 1164
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVF 1008
FV ++ I L FQ + + +F
Sbjct: 1165 AFVRMHSDDIIRRLASEFQVRYGQNLF 1191
>gi|260830109|ref|XP_002610004.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
gi|229295366|gb|EEN66014.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
Length = 804
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/659 (40%), Positives = 384/659 (58%), Gaps = 63/659 (9%)
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLK---GLERTARHMVIPYMPMLVPPVKW 468
+ PA H T K+ G+I+ +P++++ G + T+ +PML+PPV W
Sbjct: 169 LIPALYHMY------TYRNIKQVGIIKPHPMLVQLVEGAQDTSLVFDSSLLPMLMPPVPW 222
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTV-KRTPKKQLEPVFEALDTLGNTKWRVNNRVLS 527
+ KG P+ +MR++ A Q + + ++ +L P+ ++L+ LG W++N +L
Sbjct: 223 SSVKKGGFLLSPTKLMRSNDATLQHELLLEKVGTSELYPILDSLNQLGACAWKINQPILD 282
Query: 528 VLDRIWSCGGRLADLVDRNDVPLP--EKPE-----TE-----DEAQLRKWQWKVRNVKKE 575
++ R+++ G D+P P E P TE D+ +RK ++ V+K
Sbjct: 283 LVIRVFNNKGS-----KELDIPQPVSEAPTFPKLGTEILTNGDKQAMRK---QMAQVRKL 334
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
E HS R D+ KLS+A + + E FY+PHN+DFRGR YP P+ NHLGSD+ R IL F
Sbjct: 335 RSEMHSLRMDMLYKLSIANRFR-HEIFYFPHNMDFRGRVYPCPPHFNHLGSDVARSILVF 393
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
AEGR LG+ GL WLKIHL NL G K S RL + +++IFDSAD P+ G +WW+
Sbjct: 394 AEGRPLGEKGLEWLKIHLVNL-TGFKKKNSQMERLEYANEMMEEIFDSADDPMTGHKWWM 452
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A++P+Q LA C+ + A+RS P+ ++SH PVHQDGSCNGLQHYAALGRD GA VNL
Sbjct: 453 TADEPWQALACCMEIANAVRSPDPQAYVSHFPVHQDGSCNGLQHYAALGRDITGAHQVNL 512
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
+ E P DVYSG+A +V + +DA+ V A++L + RK+VKQTVMT VYG
Sbjct: 513 MPAESPQDVYSGVARQVEKLRAKDAEEGVKV------AQVLDGFIKRKVVKQTVMTVVYG 566
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VT G R QI+R+LK+ + ++ AS Y K +L E+F AR I WL E A+
Sbjct: 567 VTRYGGRLQIQRQLKDI-PDFPQDHVWEASGYLVKKVFMSLREIFTLAREIQDWLTESAR 625
Query: 876 IIASENQPVRWTTPLGLPVVQPYRK-----LGRHTVKTSLQILTLQRETEKVMVKRQRTA 930
+I+ V+W TPLGLPVVQPY K L + + E+ + + +Q+ A
Sbjct: 626 LISHVGSAVQWVTPLGLPVVQPYHKVKNKLLYHYWICIHGSYHLHFSESWRPDIIKQKNA 685
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD +HMM+T++ C++AG+ + VHD +WTHAC VD MNRI RE+FV L+ P
Sbjct: 686 FPPNFIHSLDSTHMMLTSLHCQQAGIQYVSVHDCFWTHACTVDTMNRICREQFVSLHSQP 745
Query: 991 IFENLLDSFQKSF----PKLVFPP---------------LPERGDFDLREVLGSPYFFN 1030
I E+L K + P+L P +P +G+FDLR VL S YFF+
Sbjct: 746 ILEDLSKYLLKEYGSLSPELQTSPTAVSKHDKLMEVLVDVPPKGEFDLRRVLDSTYFFS 804
>gi|26351727|dbj|BAC39500.1| unnamed protein product [Mus musculus]
Length = 1207
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/693 (40%), Positives = 390/693 (56%), Gaps = 57/693 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A P H S +
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARQGAQRSIPVLYHVYSFRS------YR 587
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 588 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 647
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD--RN 546
Q + +++ P QL +AL LGN WRVN +L ++ +I+ G + V R+
Sbjct: 648 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 707
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +++LRK ++ K RE HS R + +LS+A+ ++
Sbjct: 708 EAPRPARYQLPPGSTPVHKSELRK---ELARCLKVAREMHSLRSEALYRLSLAQHLR-HR 763
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 764 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 822
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+ + A+RS P
Sbjct: 823 KKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPA 882
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
+ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V Q+DA
Sbjct: 883 AYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDA 942
Query: 781 QRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
+ + LR A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 943 K-------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 995
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY
Sbjct: 996 -VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYH 1054
Query: 900 KLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
+ + VK LQ +TL E++K +Q+ FPPNF+HSLD SHMM+TA+ C + GL
Sbjct: 1055 RESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGL 1114
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL---------- 1006
F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F +
Sbjct: 1115 IFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSE 1174
Query: 1007 ---------VFPPLPERGDFDLREVLGSPYFFN 1030
LP+ G FDL +V+ S YFF+
Sbjct: 1175 RALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207
>gi|281332113|ref|NP_766139.2| DNA-directed RNA polymerase, mitochondrial precursor [Mus musculus]
gi|50401559|sp|Q8BKF1.1|RPOM_MOUSE RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|26343407|dbj|BAC35360.1| unnamed protein product [Mus musculus]
gi|74185846|dbj|BAE32793.1| unnamed protein product [Mus musculus]
gi|84570033|gb|AAI10698.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|109734947|gb|AAI17941.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|148699719|gb|EDL31666.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Mus
musculus]
Length = 1207
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/693 (40%), Positives = 390/693 (56%), Gaps = 57/693 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A P H S +
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARQGAQRSIPVLYHVYSFRS------YR 587
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 588 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 647
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD--RN 546
Q + +++ P QL +AL LGN WRVN +L ++ +I+ G + V R+
Sbjct: 648 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 707
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +++LRK ++ K RE HS R + +LS+A+ ++
Sbjct: 708 EAPRPARYQLPPGSTPVHKSELRK---ELARCLKVAREMHSLRSEALYRLSLAQHLR-HR 763
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 764 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 822
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+ + A+RS P
Sbjct: 823 KKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPA 882
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
+ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V Q+DA
Sbjct: 883 AYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDA 942
Query: 781 QRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
+ + LR A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 943 K-------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 995
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY
Sbjct: 996 -VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYH 1054
Query: 900 KLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
+ + VK LQ +TL E++K +Q+ FPPNF+HSLD SHMM+TA+ C + GL
Sbjct: 1055 RESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGL 1114
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL---------- 1006
F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F +
Sbjct: 1115 IFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSE 1174
Query: 1007 ---------VFPPLPERGDFDLREVLGSPYFFN 1030
LP+ G FDL +V+ S YFF+
Sbjct: 1175 RALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207
>gi|74193237|dbj|BAE20618.1| unnamed protein product [Mus musculus]
Length = 1069
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/693 (40%), Positives = 390/693 (56%), Gaps = 57/693 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A P H S +
Sbjct: 398 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARQGAQRSIPVLYHVYSFRS------YR 449
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 450 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 509
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD--RN 546
Q + +++ P QL +AL LGN WRVN +L ++ +I+ G + V R+
Sbjct: 510 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 569
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +++LRK ++ K RE HS R + +LS+A+ ++
Sbjct: 570 EAPRPARYQLPPGSTPVHKSELRK---ELARCLKVAREMHSLRSEALYRLSLAQHLR-HR 625
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 626 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 684
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+ + A+RS P
Sbjct: 685 KKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPA 744
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
+ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V Q+DA
Sbjct: 745 AYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDA 804
Query: 781 QRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
+ + LR A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 805 K-------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 857
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY
Sbjct: 858 -VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYH 916
Query: 900 KLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
+ + VK LQ +TL E++K +Q+ FPPNF+HSLD SHMM+TA+ C + GL
Sbjct: 917 RESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGL 976
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL---------- 1006
F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F +
Sbjct: 977 IFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSE 1036
Query: 1007 ---------VFPPLPERGDFDLREVLGSPYFFN 1030
LP+ G FDL +V+ S YFF+
Sbjct: 1037 RALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1069
>gi|348550224|ref|XP_003460932.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Cavia porcellus]
Length = 1267
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 262/633 (41%), Positives = 379/633 (59%), Gaps = 45/633 (7%)
Query: 430 GSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMR 485
G ++ G++ +P ++ +E+ A+ + + MPML PP+ W+ G P +M
Sbjct: 648 GVRQIGLLRPHPAFVRLVEQ-AKASTLTFEATDMPMLCPPLPWSSSQAGGFLLSPIKLMG 706
Query: 486 THGAKQQRDT-VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADL 542
+ G + ++ P QL EAL LGN WRVN R+L ++ ++ G RL
Sbjct: 707 SLGGPSSTSSRLESCPPAQLHGALEALTQLGNCAWRVNGRLLDLVLEVFLDKGCCRLGVP 766
Query: 543 VDRNDVPLPE----KPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
++ P P P+T+ +AQLR+ +V K RE H R + +LS+A+ +
Sbjct: 767 PPVSEAPRPPLDQLAPDTQPHLKAQLRQ---EVARCLKVAREMHGLRQEALYRLSLAQHL 823
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+D F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL NL
Sbjct: 824 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPRGLDWLKIHLVNL 882
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
G + RL+F + +DDI DSA++P+ GR+WW++A+DP+Q LA C+ + A++S
Sbjct: 883 -TGLKKREPLHARLSFADAMMDDILDSAERPMTGRKWWMEADDPWQTLACCMEVARAVQS 941
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P ++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + + P DVYSG+AA+V V
Sbjct: 942 PDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLASSDVPQDVYSGVAAQVEVFR 1001
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
+DAQ+ V A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 1002 AQDAQKGVKV------AQVLEGFIGRKVVKQTVMTVVYGVTLYGGRLQIEKRLRELPT-F 1054
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
+ ++ AS Y + +L EMF R I WL + A++I+ V W TPLG+P++Q
Sbjct: 1055 PQVFVWEASRYLVHLVFKSLREMFSGTRTIQHWLTQSARLISQAGSAVEWVTPLGIPIIQ 1114
Query: 897 PYRKLGRHTV-------KTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
PY + + V + LQ +T +++ +Q+ FPPNF+HSLD HMM+
Sbjct: 1115 PYHRESKLVVIPPCPQIRGGLQSVTWNSSVDSSQQPNTLKQKNGFPPNFIHSLDSCHMML 1174
Query: 947 TAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF--- 1003
TA+ C + GLTF VHD +WTHACDV +N + RE+FV L+ PI E+L ++ F
Sbjct: 1175 TALHCYRKGLTFVSVHDCFWTHACDVSFINEVCREQFVRLHSQPILEDLAAFLERRFCRE 1234
Query: 1004 ----PKLV--FPPLPERGDFDLREVLGSPYFFN 1030
KL+ +P++GDFDL++V GS YFF+
Sbjct: 1235 DEDGAKLLEMLRAVPQKGDFDLQQVKGSTYFFS 1267
>gi|322694289|gb|EFY86123.1| DNA-directed RNA polymerase [Metarhizium acridum CQMa 102]
Length = 1414
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 269/677 (39%), Positives = 387/677 (57%), Gaps = 72/677 (10%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP--DIFPAFTHALRTVSKETKGGS 431
+PW RA+VGS +++ L A+++ + P PAFTH + + +G
Sbjct: 562 EPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKEPISQKQPAFTH----MQQPRRG-- 615
Query: 432 KKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYV----MRT 486
KK GV+ N +++ L++ + ++PM+V P W ++G FL S +++
Sbjct: 616 KKVGVLHFNSNLVQQLKKEPVGDYIAKHLPMIVEPKPWRQLNEGG--FLDSRTTFVRVKS 673
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
+Q+ T + VF+ LD LG T WR+N VL+V+ W+ G +A++ N
Sbjct: 674 GDVEQKLYTEAAIKTGDMTQVFKGLDVLGKTAWRINKNVLNVMMEAWNSGEEIANMPPLN 733
Query: 547 -DVPLPEKPETEDEAQLRK-WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
+ +PE+P++ + LR+ W V+ ++ E HSQRC + L+L +AR +++ Y+
Sbjct: 734 PEFDIPEEPDSSADPLLRRSWMQAVKAIENERSGMHSQRCFMNLQLEIARAFRNQT-MYF 792
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+D+RGRAYPM YLNH+G+D R IL+FA G+ LG+ GL WLKIHLANLY G+DK
Sbjct: 793 PHNIDYRGRAYPMPTYLNHMGADHARAILKFARGKELGERGLRWLKIHLANLY--GLDKS 850
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
+ + R AFT +++ +I DSA PL G RWWLKAED +QCLA C L AL P F+S
Sbjct: 851 NFDEREAFTNDNISNIIDSATNPLNGSRWWLKAEDAWQCLAACFELKAALELPDPTKFVS 910
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNGLQHYAALG DT GA VNL E+PADVYS +A V I +DA+
Sbjct: 911 QLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADVYSAVADLVKQAIDKDAEAKN 970
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL--------KERGAPM 836
A +L ++ RK+VKQTVMT+VYGVT+ GA+ Q+ +++ KE G P
Sbjct: 971 EF------ALVLQGKITRKVVKQTVMTNVYGVTFAGAKKQVCKQIDALYPDLGKECGIPN 1024
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKIIASENQPVR------ 885
S Y A+ AL MF+ A I WLGE C + ++ + +R
Sbjct: 1025 -----LVLSTYIARHIFNALATMFRGAHDIQYWLGEIGGRVCRALTPAQLKEIRDSYEKE 1079
Query: 886 --------------------WTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVM 923
WTTPL +PVVQPYRK ++T LQ + + +T+ V
Sbjct: 1080 GSTKKDELDDLMKHFRSSVVWTTPLRMPVVQPYRKSTAREIRTCLQSVVYPVNEQTDPVN 1139
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
++Q FPPNF+HSLD SHM+++A+ C + GL FA VHDS+WTHA D+D MN ILRE F
Sbjct: 1140 KRKQLQGFPPNFIHSLDASHMLLSALQCHEQGLDFAAVHDSFWTHAADIDTMNGILREAF 1199
Query: 984 VELYEMPIFENLLDSFQ 1000
++++E + L F+
Sbjct: 1200 IQIHEEDVVGRLAAEFE 1216
>gi|354543834|emb|CCE40556.1| hypothetical protein CPAR2_105920 [Candida parapsilosis]
Length = 1292
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 304/899 (33%), Positives = 456/899 (50%), Gaps = 98/899 (10%)
Query: 151 VEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKM-----RQVKIETEAWE 205
+EEI L E+ K+E ++G+ +R+ KY RQ +IE E
Sbjct: 320 IEEIVADLDEVTKQEVKDGKLNYHDIYKRLQTDEQREKYNAALEEFNWDRQRQIEIRGIE 379
Query: 206 KAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQERCR--------- 253
A +++ D E + + KS+ W++ L I KE E C+
Sbjct: 380 GAKEKWKH---DFEEAQKRGDFNLNKSMNAQCYDWYQKLIPLIKKEHELCKALLREEKVN 436
Query: 254 ------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
AK + YAP+ ++ + AVIT+ +L+ L G G R +A +G AI
Sbjct: 437 VQDDTTTAKERAFYAPFLIKVDVEKAAVITILELLKLNANRGSLGGMRAAKAVGSVGRAI 496
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
E E R T N +E S + +KV + +++ VR+ +
Sbjct: 497 ELEYR-------------TSNLAAQEYKMS---------ISRKVVGSSQMKRI--VRKSI 532
Query: 368 KGQDDFKP-WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKE 426
D+ P W R+++G ++ L A ++ D PAF H+++ V+
Sbjct: 533 DSLDETDPQWDHATRSRIGGVLVSFLMAIAKVKVVRQSPNGVIQDYHPAFFHSMQFVN-- 590
Query: 427 TKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVM 484
++ GVI+ + + K L T+ I +P+LV P W + G + ++
Sbjct: 591 ----GQRIGVIKVHNEISKNLSGTSFMESIQPQSLPLLVKPKPWESFYGGVGLYSKKALV 646
Query: 485 RTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL- 542
R A + V+ K+ L+ VF+ L+ LG T W +N +V ++ W+ G +
Sbjct: 647 RMKDAPETEAYVRAAAKRGNLKEVFDGLNVLGTTAWTINKKVFDIISHYWNKGEEFLSIP 706
Query: 543 --VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
++ P P+ + + + + V+ + R SQRCD KL +AR E+
Sbjct: 707 PVLETAQFPAKLSPDADPSTRFEHAKATTKAVRDFSSSR-SQRCDYNYKLEIARGFIGEK 765
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
Y+PHN+DFRGRAYP+ P+LNHLG DL R + F EG LG+ GL WLK+ LAN+Y G
Sbjct: 766 -LYFPHNLDFRGRAYPISPHLNHLGGDLTRSLFLFWEGTKLGERGLEWLKVQLANVY--G 822
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
VDK R+ F +HL + SA+ PL +WW KAE P+Q L+VC L EA + P
Sbjct: 823 VDKAPISERIQFATDHLQEAIKSAEDPL-NHKWWTKAEKPWQALSVCFELAEAYKLPDPT 881
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
F+S++PVHQDG+CNGLQHYAALG D GA VNL ++P DVY+ ++ V + DA
Sbjct: 882 EFVSYLPVHQDGTCNGLQHYAALGGDFEGAKQVNLYPSDRPQDVYTFVSKLVQNRVNADA 941
Query: 781 QR--DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE 838
+ D A+F ++ RK+VKQTVMT+VYGVT++GA QIK+++ + +
Sbjct: 942 ENGDDIAIF--------FKDKITRKVVKQTVMTNVYGVTFVGALAQIKKQVAQHFGDEHD 993
Query: 839 AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE----------------NQ 882
A ++ + Y K ++ E+F+ A I WLGE AK I+ +
Sbjct: 994 AHIY--TKYLTKQVFASIRELFENAHLIQDWLGEAAKRISKSVSIDYGDVSNNDSELHSS 1051
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE--TEKVMVKRQRTAFPPNFVHSLD 940
V WTTPLGLP VQPYR H VKTS+Q +++ T + ++Q+ FPPNF+HSLD
Sbjct: 1052 AVIWTTPLGLPCVQPYRVNAHHAVKTSVQNVSITNPSGTSTIDSRKQQAGFPPNFIHSLD 1111
Query: 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
+HM+MTA +C ++ L FA VHDS+WTHA +VD MN ILRE+FV L+ + + L D F
Sbjct: 1112 ATHMLMTATSCGESDLQFASVHDSFWTHAANVDTMNSILREQFVRLHTQNLVQILRDEF 1170
>gi|417406183|gb|JAA49758.1| Putative mitochondrial/chloroplast dna-directed rna polymer [Desmodus
rotundus]
Length = 1222
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 269/686 (39%), Positives = 392/686 (57%), Gaps = 49/686 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
+PW ++G ++ E+L QT + Q ++ P H S ++
Sbjct: 557 QPWPLAVVVQLGKQLAEVLVQTVKMPGHLAQ-RQGTHNLIPVLYHVYSFRS------FRQ 609
Query: 434 YGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HG 488
G+++ +P K L TA + + +PML PP+ WT GA P+ +MR+ G
Sbjct: 610 IGILKPHP-AFKQLLETAAERTMTFEAAEVPMLCPPLPWTSPHSGAFLLSPTKLMRSVEG 668
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + ++ P L + L LGN WRVN RVL ++ +++ G RL +
Sbjct: 669 TMQHQRLLESCPPTNLHGALDTLTQLGNCAWRVNGRVLDLVLTLFNKKGCPRLGVPAPAS 728
Query: 547 DVPLP------EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P P K E + +LR+ ++ K RE HS R D +LS+A+ +++
Sbjct: 729 EAPRPPENRLSTKASPERKVELRR---QLARCLKVAREMHSLRTDALYRLSLAQHLRNSV 785
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 786 -FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL-TGL 843
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S + RLAF + ++ I DSADKP+ G +WW++A++P+Q LA C+ + +A+R+ P
Sbjct: 844 KKRESLQARLAFADEMMNKILDSADKPMTGHKWWMEADEPWQALACCMEIAQAVRAPDPA 903
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
++SH PVHQDGSCNGLQHYAALGRD++GAA+VNLV + P DVYS +AA+V V ++DA
Sbjct: 904 AYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLVPSDLPQDVYSSVAAQVEVFRRQDA 963
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
++ V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 964 EQGVQV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLREISNFPQEF- 1016
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF R I WL E A++IA V W TPLG+P++QPY
Sbjct: 1017 VWQASHYLVRQVFNSLQEMFSGTRAIQHWLAESARLIAHTGLAVEWVTPLGIPIIQPYHH 1076
Query: 901 LGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ + +Q L+ ++K + +Q+ FPPNF+HSLD SHMM+TA+ C + GLT
Sbjct: 1077 DSKVLISGGIQSLSFSSTGDTSQKPNILKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1136
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF---PKL-------- 1006
F VHD +WTHA DV MN++ RE+F+ L+ PI +L + F P+
Sbjct: 1137 FVSVHDCFWTHAADVATMNQVCREQFICLHSQPILYDLSRFLVERFCSGPRSTNVRVARL 1196
Query: 1007 --VFPPLPERGDFDLREVLGSPYFFN 1030
+ +P+ G F+L +V S YFF+
Sbjct: 1197 LDMLLSVPKTGTFNLEQVKHSTYFFS 1222
>gi|322708298|gb|EFY99875.1| DNA-directed RNA polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1326
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 268/677 (39%), Positives = 388/677 (57%), Gaps = 72/677 (10%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQ--LADAPPDIFPAFTHALRTVSKETKGGS 431
+PW RA+VGS +++ L A+++ + PAFTH + + +G
Sbjct: 482 EPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKQTISQKQPAFTH----MQQPRRG-- 535
Query: 432 KKYGVIECNPLVLKGLERTA-RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYV----MRT 486
KK GV+ N +++ L++ + ++PM+V P W ++G FL S +++
Sbjct: 536 KKVGVLHYNSNLVQQLKKEPIGDYIAKHLPMIVEPKPWRQLNEGG--FLDSRTTFVRVKS 593
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
+Q+ T + VF+ LD LG T WR+N VL+V+ W+ G +A++ N
Sbjct: 594 GDVEQKLYTEAAIKTGDMAQVFKGLDVLGKTAWRINKNVLNVMMEAWNSGEEIANMPPLN 653
Query: 547 -DVPLPEKPETEDEAQLRK-WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
+ +PE+P++ + LR+ W V+ ++ E HSQRC + L+L +AR +++ Y+
Sbjct: 654 PEFHIPEEPDSSADPLLRRSWMQAVKAIENERSGMHSQRCFMNLQLEIARAFRNQT-MYF 712
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+D+RGRAYPM YLNH+G+D R +L+FA G+ LG+ GL WLKIHLANLY G+DK
Sbjct: 713 PHNIDYRGRAYPMPTYLNHMGADHARAVLKFARGKELGERGLRWLKIHLANLY--GLDKS 770
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S + R AFT +++ +I DSA PL G RWWLKAED +QCLA C L AL P F+S
Sbjct: 771 SFDEREAFTNDNIPNIIDSASNPLNGSRWWLKAEDAWQCLAACFELKAALELPDPTKFVS 830
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+PVHQDG+CNGLQHYAALG DT GA VNL E+PADVYS +A V I +DA+ +
Sbjct: 831 QLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADVYSAVADLVKQAIDKDAEAEN 890
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL--------KERGAPM 836
A +L ++ RK+VKQTVMT+VYGVT+ GA+ Q+ +++ KE G P
Sbjct: 891 EF------ALVLQGKITRKVVKQTVMTNVYGVTFAGAKKQVCKQIDALYPDLGKECGIPN 944
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKIIASENQPVR------ 885
S Y A++ AL MF+ A I WLGE C + ++ + +R
Sbjct: 945 -----LVLSTYIARLIFNALATMFRGAHDIQYWLGEIGGRVCRALTPAQLKEIRDSYEKE 999
Query: 886 --------------------WTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVM 923
WTTPL +PVVQPYRK ++T LQ + + +T+ V
Sbjct: 1000 GRKKKDELDDLMKQFRSSVVWTTPLRMPVVQPYRKSTAREIRTCLQSVVYPVNEQTDPVN 1059
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
++Q FPPNF+HSLD SHM+++A+ C + GL FA VHDS+WTHA D+D MN ILRE F
Sbjct: 1060 KRKQLQGFPPNFIHSLDASHMLLSALQCHEQGLDFAAVHDSFWTHAADIDTMNGILREAF 1119
Query: 984 VELYEMPIFENLLDSFQ 1000
++++E + L F+
Sbjct: 1120 IQIHEDDVVGRLAAEFE 1136
>gi|281341337|gb|EFB16921.1| hypothetical protein PANDA_012709 [Ailuropoda melanoleuca]
Length = 1170
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 266/651 (40%), Positives = 377/651 (57%), Gaps = 41/651 (6%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ E+L + ++ P + + P H S +
Sbjct: 511 QPWPLPVLVQLGKKLAEVLVEV--VRMPGSLVTPQGSCTLIPVLYHVYSFRS------FR 562
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
+ G+++ +P + L A H + +PML PP+ W GA P+ +MR+
Sbjct: 563 QIGILKPHPAFTELLAVAAEHTLTFEAAEVPMLCPPLPWMSPHTGAFLLSPTKLMRSLEG 622
Query: 490 KQQRDTV------KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLAD 541
Q + P +L +AL LGN WRVN RVL ++ +++ G RL
Sbjct: 623 TMQHQRLLPPPPPPPPPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFTAKGCPRLGV 682
Query: 542 LVDRNDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
++ P P P + AQ + + +V K RE HS R D +LS+A+ ++D
Sbjct: 683 PAPPSEAPRPPDGRLPPSASSAQKAEVRREVARCLKVAREMHSLRSDALYRLSLAQHLRD 742
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL NL
Sbjct: 743 RV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL-- 799
Query: 659 GGVDKLSHE---GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
G+ K HE RL F + +DDI DSAD+P+ GR+WW++A++P+Q LA C+ + A+R
Sbjct: 800 TGLKK--HEPLRARLLFADEVMDDILDSADRPMTGRKWWMEADEPWQALACCMEIARAVR 857
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
++ P ++SH PVHQDGSCNGLQHYAALGRD++GAA+VNL+ + P DVYSG+AA+V V
Sbjct: 858 TADPTAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLLPSDLPQDVYSGVAAQVEVF 917
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
++DA+R V A++L + RK+VKQTVMT VYGVT G R QI+RRL+E
Sbjct: 918 RRQDAERGVRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNF 971
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
+E ++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+
Sbjct: 972 PQEF-VWEASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLISHAGSAVEWVTPLGIPVI 1030
Query: 896 QPYRKLGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
QPY + + + +Q LT + T+K +Q+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1031 QPYHQDSKVLISGGIQSLTFSQSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCY 1090
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
+ GLTF VHD +WTHA DV+ MN++ RE+FV+L+ PI NL K F
Sbjct: 1091 RKGLTFVSVHDCFWTHAADVEVMNQVCREQFVQLHSQPILHNLSRFLVKRF 1141
>gi|344243361|gb|EGV99464.1| DNA-directed RNA polymerase, mitochondrial [Cricetulus griseus]
Length = 1232
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 282/721 (39%), Positives = 398/721 (55%), Gaps = 85/721 (11%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPAD-QLADAPPDIFPAFTHALRTVSKETKGGSK 432
+PW +G ++ E+L Q +Q P + A + P H S +
Sbjct: 533 QPWSLTVLLHLGKQLAEMLVQA--VQMPRNLSTPQASRHLIPVLYHVYSFRS------YR 584
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P K LE A +I +PML PP+ WT GA+ + +MR T G
Sbjct: 585 QIGILKPHPAFSKLLETAAEPTLILETTEVPMLCPPLPWTTPHTGAYLLSSTKLMRATEG 644
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + ++R QL +AL LGN WRVN R+L ++ +I+ G RL R+
Sbjct: 645 TTQHQHLLERCAPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCTRLGVPPPRS 704
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +A+LRK ++ K RE HS R + +LS+A+ +++
Sbjct: 705 EAPQPAQLRLPPGATPLHKAELRK---ELSRCLKIAREMHSLRIEALYRLSLAQHLRNRV 761
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP PY NHLGSDL R +LEFAEGR LG GL W+KIHL NL G
Sbjct: 762 -FWLPHNMDFRGRTYPCPPYFNHLGSDLARALLEFAEGRPLGPRGLDWIKIHLVNL-TGL 819
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S RL F + +++I DSAD P+ GR+WW++A++P+Q LA CI + A+RS
Sbjct: 820 RKRDSLRMRLRFADEVMEEILDSADNPMTGRKWWMEADEPWQTLACCIEVARAVRSPDAA 879
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
++SH+PVHQDGSCNGLQHYAALGRD+ GAA+VNL+ + P DVY +AA+V + QRDA
Sbjct: 880 AYVSHLPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSDLPQDVYREVAAQVEELRQRDA 939
Query: 781 QRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
+ D L+ A +L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 940 K-------DGLQVAHVLKGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSNFPQEF 992
Query: 840 ELFGASCYAAKVTLTALGEMFQAAR--------------------------GIMS----W 869
++ AS Y ++ +L EMF + R G++S W
Sbjct: 993 -VWEASHYLVRLVFKSLQEMFSSTRAIQVRPCPPSPMGGNYPPPRGLLIQPGVLSHPQHW 1051
Query: 870 LGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE---TEKVMVKR 926
L E A +I+ PV W TPLG+PV+QPY + + VK +Q +T+ T+K +
Sbjct: 1052 LTESANLISHSGWPVEWVTPLGIPVIQPYHREAKVQVKGGIQSITMTSSMDITQKPNTLK 1111
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
Q+ FPPNF+HSLD +HMM+TA+ C + GLTF VHD +WTHA D+ MN + RE+FV L
Sbjct: 1112 QKNGFPPNFIHSLDSAHMMLTALHCYRKGLTFVSVHDCFWTHAADIPVMNEVCREQFVRL 1171
Query: 987 YEMPIFENLLDSFQKSFPKL-----------------VFPPLPERGDFDLREVLGSPYFF 1029
+ PI E+L +K F + LP+ G FDL +V+ S YFF
Sbjct: 1172 HSQPILEDLAKFLEKRFCSVSSSQKPSELALATKLQKTLQSLPKTGTFDLSQVMKSTYFF 1231
Query: 1030 N 1030
+
Sbjct: 1232 S 1232
>gi|148699722|gb|EDL31669.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_d [Mus
musculus]
Length = 1144
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 271/649 (41%), Positives = 372/649 (57%), Gaps = 69/649 (10%)
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDK 473
PAFTH L T ++ T L + E +PML PP+ WT
Sbjct: 533 PAFTHLLETAAEPT--------------LTFETTE----------VPMLCPPLPWTSLHS 568
Query: 474 GAHFFLPSYVMR-THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
GA+ + +MR T G Q + +++ P QL +AL LGN WRVN +L ++ +I
Sbjct: 569 GAYLLSSTKLMRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQI 628
Query: 533 WSCGGRLADLVD--RNDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRC 584
+ G + V R++ P LP +++LRK ++ K RE HS R
Sbjct: 629 FRDKGCMPLGVPPPRSEAPRPARYQLPPGSTPVHKSELRK---ELARCLKVAREMHSLRS 685
Query: 585 DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS 644
+ +LS+A+ ++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG
Sbjct: 686 EALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPR 744
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
GL WLKIHL NL G S RLAF + +++I DSAD PL GR+WW++A++P+Q L
Sbjct: 745 GLDWLKIHLINL-TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTL 803
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A C+ + A+RS P +ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DV
Sbjct: 804 ACCMEVAHAVRSPDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDV 863
Query: 765 YSGIAARVLVIIQRDAQRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARD 823
Y +A +V Q+DA+ + LR A++L + RK+VKQTVMT VYGVT G R
Sbjct: 864 YREVATQVEEFRQQDAK-------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRL 916
Query: 824 QIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP 883
QI++RL+E +E ++ AS Y + +L EMF + R I WL E A +I+ P
Sbjct: 917 QIEKRLRELSDFPQEF-VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWP 975
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLD 940
V W TPLG+P++QPY + + VK LQ +TL E++K +Q+ FPPNF+HSLD
Sbjct: 976 VEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLD 1035
Query: 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
SHMM+TA+ C + GL F VHD +WTHA D+ MN + RE+FV L+ PI E+L +
Sbjct: 1036 SSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLK 1095
Query: 1001 KSFPKL-------------------VFPPLPERGDFDLREVLGSPYFFN 1030
K F + LP+ G FDL +V+ S YFF+
Sbjct: 1096 KRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1144
>gi|240274975|gb|EER38490.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces capsulatus
H143]
Length = 1265
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/698 (39%), Positives = 389/698 (55%), Gaps = 70/698 (10%)
Query: 343 EQEKLRKKVTDLI--------KKQKLPAVRRIVKGQDDFKP--WGQDARAKVGSRVIELL 392
++ K KK++ LI +K ++ R I + + +P W +AK+G+ + +L
Sbjct: 390 KKSKPTKKISALIDKLVHKGTRKAQVQWRRIIARFEQSQRPVDWSPVVQAKIGACLASML 449
Query: 393 TQTAYIQSPA-DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA 451
TA + P D + A A R V + +G + G + N +++ L R
Sbjct: 450 LSTATVPVPTKDPKTNQQKQTDQA---AFRRVYQLERGF--RVGYVHANDYIVEKLRREP 504
Query: 452 R-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKK-QLEPVF 508
++ ++PM+ PP WT G PS VMR G Q V+ + L+ VF
Sbjct: 505 LGELLAKHLPMVCPPRPWTSARGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDLDTVF 564
Query: 509 EALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQW 567
L LG T W++N VL+V+ W+ G +A+L N ++ PEKP+T+D L+ +
Sbjct: 565 AGLTVLGKTGWKINRGVLNVMLEAWNSGEEIANLAPENPNIIEPEKPDTDDRDILKDYYR 624
Query: 568 KVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSD 627
+ HSQRC +L +AR ++E FY PHN+DFRGRAYPM PY N +G+D
Sbjct: 625 ARMHATNARTGYHSQRCFQNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGAD 683
Query: 628 LCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKP 687
CRG+L F++GR LG SGL WLKIHLAN++ G DK S + R F +HL+DI DSA
Sbjct: 684 HCRGLLLFSKGRELGASGLRWLKIHLANVF--GFDKASFQEREQFAMDHLEDIRDSAING 741
Query: 688 LEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDT 747
L+G+RWWL A DPFQCLA CI LT A+ P ++SH+PVHQDGSCNGLQHYAALG D
Sbjct: 742 LKGKRWWLDAGDPFQCLAACIELTNAMALEDPTKYVSHLPVHQDGSCNGLQHYAALGGDV 801
Query: 748 LGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQ 807
+GA VNL ++P+D+Y+G+A V IQ+DA + AKLL ++ RK+VKQ
Sbjct: 802 IGAQQVNLEPSDRPSDIYTGVAEHVKQSIQKDAAKGNET------AKLLEDKITRKIVKQ 855
Query: 808 TVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGI 866
TVMT+VYGVT++GA Q++++L + + + + G + Y A+ ALG MF A I
Sbjct: 856 TVMTNVYGVTFLGAIRQVRKQLVDHYPDLLHSGVAGECATYIARKIFVALGSMFTGAHDI 915
Query: 867 MSWLGECAKIIASE--------------------------------------NQPVRWTT 888
WLG+CA I+ V WTT
Sbjct: 916 QFWLGDCANRISQSLSSEQIEALSDERNLKVVGRFQGAKKLAKNIKDPKSHFKSTVVWTT 975
Query: 889 PLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
PL LPV QPYR V + LQ L+++ + ++ V ++Q AFPPNFVHSLD +HM +
Sbjct: 976 PLKLPVAQPYRDAACVKVFSDLQQLSIRNPQASDVVNKRKQLQAFPPNFVHSLDATHMFL 1035
Query: 947 TAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
+AV C + GL+F+ VHDS+WTHA DVD MNR+LR+ F+
Sbjct: 1036 SAVKCDELGLSFSAVHDSFWTHAADVDTMNRVLRDAFI 1073
>gi|363743780|ref|XP_418204.3| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Gallus gallus]
Length = 1236
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 275/685 (40%), Positives = 392/685 (57%), Gaps = 54/685 (7%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQL-ADAPPDIFPAFTHALRTVSKETKGGSKKY 434
W ++G ++E+L ++ P + L P + P H S S +
Sbjct: 576 WPYVLLMRLGMYLLEILVHA--VKVPRNTLNPRLPSKLIPVLYHIYSFRS------SWQV 627
Query: 435 GVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAK 490
G+I+ +P+ + + A M+ +PML PPV WT GA + +MR GA
Sbjct: 628 GLIKPHPIFSQIVSDAAETMLTFNSSAIPMLCPPVPWTSPHFGAFVLSDTKLMRYVDGAI 687
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL 550
Q + + + P+ L PV +AL+ LGN W++N VL ++ I++ G ++ D+P
Sbjct: 688 QHQQLLDQCPQVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDIPP 742
Query: 551 P-------EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
P + A + + ++ KK+ E HS R D KLS+A ++D+ F+
Sbjct: 743 PVSEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDK-VFW 801
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
+PHN+DFRGR YP PY NHLG+D+ R IL FAEGR LG GL WLKIHL NL G K
Sbjct: 802 FPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TGLKKK 860
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
+ + RL + +++I DSAD PL GR+WW+ ++P+Q LA C+ + +A RS P FI
Sbjct: 861 NALQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDPAAFI 920
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD 783
SH PVHQDGSCNGLQHYAALGRD +GA +VNL+ P DVYS +A +V ++DA+
Sbjct: 921 SHFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCNVPQDVYSAVAQQVEEFRKKDAE-- 978
Query: 784 PAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
+ LR A++L + RK+VKQTVMT VYGVT G R Q+++RLKE P E L+
Sbjct: 979 -----EGLRIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQMEKRLKEIEFP--EEYLW 1031
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
AS Y K + EMF A R I +WL E AK+IA + V W TPLGLP+VQPY ++
Sbjct: 1032 EASHYLVKQVFNGIKEMFSATRDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYYRIR 1091
Query: 903 RHTVKTSLQILTLQRET---EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFA 959
+ S+Q L+++ + +K +Q+ AFPPNF+HSLD +HMM+TA+ C + GLTF
Sbjct: 1092 PTVLTCSMQNLSVKNSSNNNQKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCFRQGLTFV 1151
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF------------PKLV 1007
VHD YWTHA VD MN I R++FV L+ I E+L +++ KL+
Sbjct: 1152 SVHDCYWTHALTVDIMNEICRQQFVALHSQKILEDLSKFMLENYCSPDRESRALWQKKLM 1211
Query: 1008 --FPPLPERGDFDLREVLGSPYFFN 1030
+P+ G+F+L +V+ S YFF+
Sbjct: 1212 EQLSNVPKTGEFNLNKVIDSTYFFS 1236
>gi|353240452|emb|CCA72321.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Piriformospora indica DSM 11827]
Length = 1283
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 295/830 (35%), Positives = 432/830 (52%), Gaps = 116/830 (13%)
Query: 246 AKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
A+ + R + + + + LP + + +I M +L+ +L +GG AR + IG
Sbjct: 361 ARRAKAHRKGEERTPISFFLRLLPPEKLTLICMLELLNMLASGGYEDGARTTRVLLSIGA 420
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
AIE E H F K + + + + +V E +++V R
Sbjct: 421 AIEAE---HHFQMAKKHDIPVPDFKSKSELPTYSVAGYLELHKERVK----------ARL 467
Query: 366 IVKGQDDF-KPWGQDARAKVGSRVIE-LLTQTAYIQSPADQLADAPPDIFPAFTHALRTV 423
++G++++ PW Q+ RA+VG+ V + L+ Q IQ+ + D + A
Sbjct: 468 ELEGRENWMPPWTQEVRARVGAFVADALMEQAKVIQTKV--INDV---VHEEEQQAFYNA 522
Query: 424 SKETKGGSKKYGVIECNPLVLKGLERT-------ARHMVIPYMPMLVPPVKWTGYDKGAH 476
+ +G K GVI+ N +++ L R ARH+ PM+V P W ++ G +
Sbjct: 523 YRYERGF--KIGVIKMNDMIIDKLSREPPRERLHARHL-----PMVVRPRPWLRHNAGGY 575
Query: 477 FFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
+ VMR + +Q ++ + +E V+ LD LG T W+ L
Sbjct: 576 LYSNLSVMRMKESNEQTSYLREADSRGAMELVYAGLDVLGKTAWKATLAFLL-------- 627
Query: 536 GGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
L + +P T+ A+ + ++ + E HS RC K+ +AR
Sbjct: 628 ------LTSNKRIQIPPLDHTDMRAKA-DYAVAMKKLALEQAANHSDRCSTNYKMEIART 680
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
E+ FY PHNVDFRGRAYP+ P+LNHLG DL RG+L FAEG+ LGK G+ WLKIHLAN
Sbjct: 681 FLGEK-FYLPHNVDFRGRAYPIPPHLNHLGDDLSRGLLLFAEGKPLGKRGIRWLKIHLAN 739
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
LY G DK + + R F+ HL++I+DSA+ PL GR+WWLKA+DP+QCLA C+ L AL
Sbjct: 740 LY--GYDKATFDDRETFSTEHLEEIYDSAENPLTGRQWWLKADDPWQCLATCMELRNALE 797
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
S +PE + S +PVHQDG+CNGLQHYAALG D +GA VNL ++P+DVY+ +A
Sbjct: 798 SPNPEMYESCLPVHQDGTCNGLQHYAALGGDVIGARQVNLDVSDRPSDVYTYVAKMAEAQ 857
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSV-------------YGVTYIGAR 822
I +DA+ + A+ L ++ RKLVKQTV TS + VT+IGAR
Sbjct: 858 INKDAEGGHEI------AQKLQGRITRKLVKQTVRTSAKYSAETHQTTGHDHWVTFIGAR 911
Query: 823 DQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA---- 878
DQI ++LK ++ +L+ + Y AKVTL +G +F+ A+ I WL +CA++I+
Sbjct: 912 DQIYKQLKTFD-DLDGMDLYPWAIYLAKVTLNCIGTLFKGAKDIQLWLNDCARLISKSIP 970
Query: 879 -------------------------------------SENQPVRWTTPLGLPVVQPYRKL 901
+ V WTT LGLP+VQPYRK
Sbjct: 971 EDRVRLMVMAEQDARRVPGDVKQSISRQWAADKNGGKEQMTTVIWTTLLGLPIVQPYRKA 1030
Query: 902 GRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFA 959
GR + T LQ + + + V +Q +AFPPNFVHSLD +HMM+TA+ C + GL FA
Sbjct: 1031 GRKQIMTQLQSVFISDPNQPHSVNTMKQVSAFPPNFVHSLDATHMMLTALQCDRQGLAFA 1090
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
VHDSYWTHACD+D M+ +R+ FV L+ + ENLL+ F+ + P
Sbjct: 1091 AVHDSYWTHACDIDAMSVAIRDSFVHLHSSNVLENLLEEFKARYQGYKLP 1140
>gi|342888051|gb|EGU87468.1| hypothetical protein FOXB_02053 [Fusarium oxysporum Fo5176]
Length = 1450
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 284/761 (37%), Positives = 413/761 (54%), Gaps = 95/761 (12%)
Query: 311 VRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ 370
+R +FL + K ++ E ES E D + +P + I+
Sbjct: 506 LRKVQFLAQEKDVQAAESNEPIAAKESTEANASTEVNESTEADASTETNVPVRQEIIT-- 563
Query: 371 DDFKP----------WGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAF 416
D ++P W RA+VGS +++ L +TA I + P + + + PAF
Sbjct: 564 DAYQPTEAKDPVLSSWSVQVRARVGSILLKSLIETAKINVVKEHPISR--ERISQLQPAF 621
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGA 475
+H + KG KK G++ NP +++ L+R + ++PM+ P WT ++G
Sbjct: 622 SH----MQAPKKG--KKVGMLTINPELVERLKREPMGDFLAKHLPMIAEPRPWTRINEGG 675
Query: 476 HFFLPSYVMRTHGAKQQRDTVKRTPKKQ--LEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
+ ++R ++ K+ ++ VF+ LD LG T WRVNN VL V+ W
Sbjct: 676 FLVSKASLIRVKSGDVEQKLYANAAIKRGDMDQVFKGLDVLGKTPWRVNNSVLDVMIEAW 735
Query: 534 SCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRER---HSQRCDIELK 589
+ G +A++ + D+ +P +P D R W +RNVK+ ER HSQRC + L+
Sbjct: 736 NSGDAIANMPELTPDLQIPAEPTNSDPLLRRAW---IRNVKQVENERGALHSQRCYMNLQ 792
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L +AR + ++ Y+PHN+D+RGRAYP+ YLNH+G+D R +L+FAEG+ LG+ GL WL
Sbjct: 793 LEIARAFR-KQVIYFPHNMDYRGRAYPIPTYLNHMGADHTRALLKFAEGKRLGEQGLRWL 851
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIHLAN+Y G DK S + R AF ++L +I +S + PL G RWWLKAEDP+QCLA C
Sbjct: 852 KIHLANVY--GFDKASFDEREAFATDNLANITESVENPLNGSRWWLKAEDPWQCLATCFE 909
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L A P F+S++PVHQDG+CNGLQHYAALG DT GA VNL+ +PADVYS +A
Sbjct: 910 LKAAYDLPDPTEFVSNLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGSRPADVYSAVA 969
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
V I++DA + K L ++ RK+VKQTVMT+VYGVT+ GA+ Q+ ++L
Sbjct: 970 NLVKESIEKDANAGSQL------GKNCLGKITRKVVKQTVMTNVYGVTFAGAKQQVCKQL 1023
Query: 830 --------KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKI 876
KE G P + Y A+ ALG MF+ A I WLGE C +
Sbjct: 1024 DALYPEMFKETGIPN-----LVTATYIAQHIFNALGTMFRGAHDIQYWLGEIGARVCKAL 1078
Query: 877 IASE---------NQP-----------------------VRWTTPLGLPVVQPYRKLGRH 904
++ N+P V WTTPL +PVVQPYRK
Sbjct: 1079 TPAQLDQLQEEKDNKPAAKKTASGKNKELDELTSQFRSTVVWTTPLRMPVVQPYRKSITR 1138
Query: 905 TVKTSLQILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
++T LQ ++ Q +TE V ++Q FPPNF+HSLD SHM+++A+ C + GL FA VH
Sbjct: 1139 EIRTCLQSISYPTQGQTEPVDRRKQLQGFPPNFIHSLDASHMLLSALKCDELGLKFAAVH 1198
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
DS+WTHA DVD ++ +LR+ F+ ++E + L F+ +
Sbjct: 1199 DSFWTHAADVDILSGVLRDAFIRIHEEDVVGRLATEFEARY 1239
>gi|326934436|ref|XP_003213296.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Meleagris
gallopavo]
Length = 1203
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 273/685 (39%), Positives = 393/685 (57%), Gaps = 54/685 (7%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQL-ADAPPDIFPAFTHALRTVSKETKGGSKKY 434
W ++G ++E+L ++ P + L P + P H S S +
Sbjct: 543 WPYVLLMRLGMYLLEILVHA--VKVPRNTLNPRLPSKLIPVLYHIYSFRS------SWQV 594
Query: 435 GVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAK 490
G+I+ +P+ + + A M+ +PML PPV WT GA + +MR GA
Sbjct: 595 GLIKPHPIFSQIVSDAAEAMLTFNSSAIPMLCPPVPWTSPHFGAFVLGDTKLMRYVDGAI 654
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL 550
Q + + + P+ L PV +AL+ LGN W++N VL ++ I++ G ++ D+P
Sbjct: 655 QHQQLLDQCPQXNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDIPP 709
Query: 551 P-------EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
P + A + + ++ KK+ E HS R D KLS+A ++D+ F+
Sbjct: 710 PVSEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDK-VFW 768
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
+PHN+DFRGR YP PY NHLG+D+ R IL FAEGR LG GL WLKIHL NL G K
Sbjct: 769 FPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TGLKKK 827
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
+ + RL + +++I DSAD PL GR+WW+ ++P+Q LA C+ + +A RS +P F+
Sbjct: 828 NALQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPNPAAFV 887
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD 783
SH PVHQDGSCNGLQHYAALGRD +GA +VNL+ P DVYS +A +V ++DA+
Sbjct: 888 SHFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCSVPQDVYSAVAQQVEEFRKKDAE-- 945
Query: 784 PAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
+ LR A++L + RK+VKQTVMT VYGVT G R Q+++RLKE P E ++
Sbjct: 946 -----EGLRIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQMEKRLKEIEFP--EEYIW 998
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
AS Y K + EMF A R I +WL E AK+IA + V W TPLGLP+VQPY ++
Sbjct: 999 EASHYLVKQVFNGIKEMFSATRDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYYRIR 1058
Query: 903 RHTVKTSLQILTLQRET---EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFA 959
+ ++Q L+++ + +K +Q+ AFPPNF+HSLD +HMM+TA+ C + GLTF
Sbjct: 1059 PTVLTCNMQNLSVKNSSNNNQKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCFRQGLTFV 1118
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF------------PKLV 1007
VHD YWTHA VD MN+I R++FV L+ I E+L K + KL+
Sbjct: 1119 SVHDCYWTHALTVDIMNKICRQQFVALHSQKILEDLSKFMLKHYCSPDKESRALWQKKLM 1178
Query: 1008 --FPPLPERGDFDLREVLGSPYFFN 1030
+P+ G+F+L +V+ S YFF+
Sbjct: 1179 EQLSNVPKTGEFNLNKVIDSTYFFS 1203
>gi|270012086|gb|EFA08534.1| hypothetical protein TcasGA2_TC006188 [Tribolium castaneum]
Length = 1258
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 281/697 (40%), Positives = 384/697 (55%), Gaps = 65/697 (9%)
Query: 372 DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGS 431
D + W +G + +++ + A + + PAF RT + K
Sbjct: 589 DHRTWSPSTLQTIGKFLYKIVMHDLKVDVNAMKANIKHKNNHPAFYTVFRTQGRVLKEEV 648
Query: 432 KKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRTH 487
K + V L L R + + + +PM PPV WT D G + +P V+R
Sbjct: 649 KPHPV-------LARLFRASMPETLTFPANELPMFCPPVPWTCVDNGGYLIVPCEVVRLP 701
Query: 488 -GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
A Q+ + ++ +QL P +AL+ L W+VN VL V+ +++ GG +
Sbjct: 702 PQATSQKQRLYQSEVQQLYPPLDALNQLAAVAWKVNTDVLDVILEVFNNGGSA-----KL 756
Query: 547 DVPLP----EKPET----EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
DVP P +P+ D+AQ K + +++ E +S CD +LS+A +
Sbjct: 757 DVPEPPTALARPQAITNDMDKAQKFKLFRQKLQYRRKKAEMYSLWCDCLYRLSLANHFR- 815
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658
+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L FAE R LG GL+WLK+HL NL
Sbjct: 816 SDIFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLVFAESRPLGPDGLNWLKLHLINL-T 874
Query: 659 GGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSS 718
G + S RLA+ + +DDI DSAD PL GR+WW ++E+P+Q LA CI + +A RS +
Sbjct: 875 GLKKRDSITDRLAYADTIMDDILDSADSPLTGRQWWAESEEPWQTLACCIEIAKATRSGN 934
Query: 719 PETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQR 778
PET+ SH PVHQDGSCNGLQHYAALGRD+ GA +VNL E P DVYS + A LV QR
Sbjct: 935 PETYRSHFPVHQDGSCNGLQHYAALGRDSAGAYSVNLCPSEVPQDVYSAVVA--LVEQQR 992
Query: 779 --DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
DA V AK L V RK++KQT+MT+VYGVT GAR QI R+LK+
Sbjct: 993 LVDAANGVEV------AKALHGFVKRKVIKQTIMTTVYGVTKYGARLQIARQLKDIDD-F 1045
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
+ ++ AS Y T +L MF + R I W +CA++I+ Q V W TP+GLP+VQ
Sbjct: 1046 PKDLVWAASSYLTGRTFDSLRSMFTSTREIQDWFTDCARLISMSGQHVEWVTPMGLPIVQ 1105
Query: 897 P---YRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
P Y+ LG V + E EK V +Q+ AFPPNF+HSLD SHMM+T++ C +
Sbjct: 1106 PYIRYKNLGTSLVYKPYHM----DEFEKPNVMKQKNAFPPNFIHSLDSSHMMLTSLFCER 1161
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL------------------ 995
AG+TF VHD YWTH VD MN+I RE+FV L+ +PI ENL
Sbjct: 1162 AGITFVSVHDCYWTHPSTVDIMNKICREQFVALHSLPILENLSMFLTEKYSFRNDDLIGD 1221
Query: 996 --LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ K+ V LP+ GDFD+ +VL S YFF+
Sbjct: 1222 GSISDLTKTKLNKVLRKLPKTGDFDITQVLKSVYFFS 1258
>gi|91088063|ref|XP_967600.1| PREDICTED: similar to CG4644 CG4644-PA, partial [Tribolium castaneum]
Length = 1176
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/697 (40%), Positives = 384/697 (55%), Gaps = 65/697 (9%)
Query: 372 DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGS 431
D + W +G + +++ + A + + PAF RT + K
Sbjct: 507 DHRTWSPSTLQTIGKFLYKIVMHDLKVDVNAMKANIKHKNNHPAFYTVFRTQGRVLKEEV 566
Query: 432 KKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRTH 487
K + V L L R + + + +PM PPV WT D G + +P V+R
Sbjct: 567 KPHPV-------LARLFRASMPETLTFPANELPMFCPPVPWTCVDNGGYLIVPCEVVRLP 619
Query: 488 -GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
A Q+ + ++ +QL P +AL+ L W+VN VL V+ +++ GG +
Sbjct: 620 PQATSQKQRLYQSEVQQLYPPLDALNQLAAVAWKVNTDVLDVILEVFNNGGSA-----KL 674
Query: 547 DVPLP----EKPET----EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
DVP P +P+ D+AQ K + +++ E +S CD +LS+A +
Sbjct: 675 DVPEPPTALARPQAITNDMDKAQKFKLFRQKLQYRRKKAEMYSLWCDCLYRLSLANHFR- 733
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658
+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L FAE R LG GL+WLK+HL NL
Sbjct: 734 SDIFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLVFAESRPLGPDGLNWLKLHLINL-T 792
Query: 659 GGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSS 718
G + S RLA+ + +DDI DSAD PL GR+WW ++E+P+Q LA CI + +A RS +
Sbjct: 793 GLKKRDSITDRLAYADTIMDDILDSADSPLTGRQWWAESEEPWQTLACCIEIAKATRSGN 852
Query: 719 PETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQR 778
PET+ SH PVHQDGSCNGLQHYAALGRD+ GA +VNL E P DVYS + A LV QR
Sbjct: 853 PETYRSHFPVHQDGSCNGLQHYAALGRDSAGAYSVNLCPSEVPQDVYSAVVA--LVEQQR 910
Query: 779 --DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
DA V AK L V RK++KQT+MT+VYGVT GAR QI R+LK+
Sbjct: 911 LVDAANGVEV------AKALHGFVKRKVIKQTIMTTVYGVTKYGARLQIARQLKDIDD-F 963
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
+ ++ AS Y T +L MF + R I W +CA++I+ Q V W TP+GLP+VQ
Sbjct: 964 PKDLVWAASSYLTGRTFDSLRSMFTSTREIQDWFTDCARLISMSGQHVEWVTPMGLPIVQ 1023
Query: 897 P---YRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
P Y+ LG V + E EK V +Q+ AFPPNF+HSLD SHMM+T++ C +
Sbjct: 1024 PYIRYKNLGTSLVYKPYHM----DEFEKPNVMKQKNAFPPNFIHSLDSSHMMLTSLFCER 1079
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL------------------ 995
AG+TF VHD YWTH VD MN+I RE+FV L+ +PI ENL
Sbjct: 1080 AGITFVSVHDCYWTHPSTVDIMNKICREQFVALHSLPILENLSMFLTEKYSFRNDDLIGD 1139
Query: 996 --LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ K+ V LP+ GDFD+ +VL S YFF+
Sbjct: 1140 GSISDLTKTKLNKVLRKLPKTGDFDITQVLKSVYFFS 1176
>gi|149244242|ref|XP_001526664.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449058|gb|EDK43314.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1307
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 298/850 (35%), Positives = 436/850 (51%), Gaps = 86/850 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +IE E A +++ D E +L K L WF+ L I +EQ+
Sbjct: 384 RQRQIEVRGMEGAREKWKH---DFEEATKRGDLNMSKGLNAKCYEWFQELMPLIKREQDL 440
Query: 252 CRM---------------AKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARV 296
CR A+ + YAPY Q+PA+ AVIT+ ++ + R+
Sbjct: 441 CRDLINGDKSAKQGSTEDARERALYAPYLIQVPAERAAVITILDVLRQHAANTSNKGMRI 500
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK 356
Q +G + E E ++ K +K K + KK +
Sbjct: 501 SQTMAGVGKSFEAESKVSKLAKKDAKLFAS----------------------KKFAGSTQ 538
Query: 357 KQKLPAVRRIVKGQDDFK-PWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
Q++ +R+ ++ QDD W R+K+G ++ L +A ++ D I PA
Sbjct: 539 LQRV--IRKSLEKQDDKGLVWDPLIRSKIGGVLLSFLMSSAKVKVTRDVDGKKESAIHPA 596
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY-MPMLVPPVKWTGYDKG 474
F H++ TV+ +K G + + VL G + + ++P MPMLV P W+ Y G
Sbjct: 597 FFHSV-TVNSGSKSG--MFNIHSEVRKVLSGNQFS--DTIMPQSMPMLVEPKPWSSYYGG 651
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
+ ++R + + VK K+ L VF+ L+ LG+T W +N ++ V+ W
Sbjct: 652 GSLYSEESLIRLKESPETSAYVKAAAKRGNLTEVFDGLNVLGSTPWTMNRKIFDVVSHYW 711
Query: 534 SCGGRLADLVDRND-VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
+ G + +D LP +PET D Q+ ++ +E S+RCD KL +
Sbjct: 712 NTGEEYLTIPPVSDQANLPARPETMDPRQIFEYDKAFNKAAREFASNRSRRCDYNYKLEI 771
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
AR E+ Y+P N+DFRGRAYP+ P+LNHLG D+ R + F +G+ LGK GL WLK+
Sbjct: 772 ARAYLGEK-LYFPCNLDFRGRAYPITPFLNHLGGDITRSLFLFWDGKELGKRGLEWLKVQ 830
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LAN+Y G+DK R+ F E L+D SA+ P +WW KAE P+Q L+VC L E
Sbjct: 831 LANVY--GIDKAPLSERIQFVEERLEDAIKSAEDPY-NNKWWTKAEKPWQALSVCFELAE 887
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
A + P F+SH+PVHQDG+CNGLQHYAALG D GA VN++ R++P DVY+ +A V
Sbjct: 888 AYKLEDPTKFVSHLPVHQDGTCNGLQHYAALGGDVEGATQVNMMPRDRPQDVYTFVANLV 947
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+ + A AK L ++ RK+VKQTVMT+VYGVTY+GA QIK+++ +
Sbjct: 948 ------EERLRVAAAEGNEHAKFLQGKIKRKVVKQTVMTNVYGVTYVGALQQIKKQILQY 1001
Query: 833 GAPMEEAELFGASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASE----------- 880
+E E Y + ++ E+F+ A I WL E A+ I+
Sbjct: 1002 ---FDEGEDVAPKLNYLTVLVFASIRELFENAHLIQDWLAEAARRISRSVSIDYSDDNTN 1058
Query: 881 -----NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQRTAFPP 933
+ V WT+PLGLP VQPYR VKT +Q +++ T V ++Q FPP
Sbjct: 1059 GREIHSSSVIWTSPLGLPCVQPYRHKKLIAVKTLVQDISVTTPTGVTSVDSRKQVAGFPP 1118
Query: 934 NFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFE 993
NF+HSLD SHM+MTA AC + GL FA VHDS+WTHA DVD MN +LR++FV+L+ + E
Sbjct: 1119 NFIHSLDASHMLMTASACGRHGLHFASVHDSFWTHASDVDTMNTLLRQEFVKLHSRNLVE 1178
Query: 994 NLLDSFQKSF 1003
L D F + +
Sbjct: 1179 ELKDEFMERY 1188
>gi|190348218|gb|EDK40635.2| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC 6260]
Length = 1303
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 309/926 (33%), Positives = 463/926 (50%), Gaps = 116/926 (12%)
Query: 137 EAVSSTDVEEDVSIVEEIQ-------ELLQEMKKEEQREGENGSGRNRRRVARGMGSGKY 189
E +S + E V+++ ++ + + +K +EQR+ N +
Sbjct: 316 EFISDIESELGVNVLHNVKGHKKDYFAVYRSLKSDEQRQKFN-------EALDLFNESRQ 368
Query: 190 RMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIA 246
R L++R V E W+ +EY E+ QK K+L W+ + +
Sbjct: 369 RQLELRGVDGAREKWK---HEYEEM------QKRGA-FAIHKNLNVQLFKWYSDMLPYVE 418
Query: 247 KEQERCR------------------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG 288
KE + CR K + YAPY +P MAVIT+ +L+ L TG
Sbjct: 419 KEAKICRKIVAGELDVKDCKPEEAAQMKERSYYAPYMILVPPKKMAVITILELLKLNSTG 478
Query: 289 GEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLR 348
G R +A +G A+E E + N V E+ L
Sbjct: 479 GIVDGMRTARAVISVGKALELEYK-----------------------SQNLVEAERRSLS 515
Query: 349 KKVTDLIKKQKLPAVRRIVKGQD--DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ-- 404
KK+ + +K+ R+ ++ W AKVGS + LL A +
Sbjct: 516 KKLKTTNQWKKILRTRKDYSKENPNATNEWDYPIYAKVGSVLTSLLMHVAKVSVKGTDPV 575
Query: 405 LADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA-RHMVIP-YMPML 462
+ PAF H + + ++ GV++ + +++ L A + V P +PML
Sbjct: 576 TGKQVKTMQPAFHHTYQFLQ------GQRLGVLKVHKSLIRQLAGNALSNAVQPQLLPML 629
Query: 463 VPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRV 521
VPP W Y+ G + F + ++R + + +K L+ V+E L+ LG T W +
Sbjct: 630 VPPRPWVAYNDGGYLFSQNNIIRIKDSAETNAYLKAASDMGNLDQVYEGLNVLGETCWTI 689
Query: 522 NNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK--WQWKVRNVKKENRER 579
N+ V V+ W+ G + D+ + P D L+K +Q ++R + +
Sbjct: 690 NHEVFDVISHYWNSGEKFLDIPSIVEELDIPPPPPIDADPLQKTDYQRRLRQLMNDAASA 749
Query: 580 HSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 639
SQRCD +L +AR E+ Y+ HNVDFRGRAYP+ P+ NHLG+D+ R + F +G+
Sbjct: 750 RSQRCDTNYRLEIARAFLGEK-LYFSHNVDFRGRAYPLSPHFNHLGNDMTRSLFLFWDGK 808
Query: 640 TLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAED 699
+G GL W+KIHLANLY G++K R+ F +++L I +SA PL WW KAE
Sbjct: 809 KVGARGLEWIKIHLANLY--GINKAPLHERVQFVDDNLHHIIESAKNPLAEDAWWKKAEK 866
Query: 700 PFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVARE 759
P+Q L VC L A P ISH+P+HQDG+CNGLQHYAALG D GA VNL+ +
Sbjct: 867 PWQVLGVCFELKRAYDLEDPTEHISHLPIHQDGTCNGLQHYAALGGDFEGARQVNLIPAD 926
Query: 760 KPADVYSGIAARVL--VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVT 817
+P DVYS +A+ V V + +A + A+F L ++ RK+VKQTVMT+VYGVT
Sbjct: 927 RPQDVYSFVASLVQKRVDAEAEAGNEYALF--------LRDKITRKVVKQTVMTNVYGVT 978
Query: 818 YIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKII 877
++GA QI++++ + + ++ ++ S Y + ++ E+F A I WLGE AK I
Sbjct: 979 FVGAVAQIQKQIDQYFSKEDQDKVADYSRYLTMLVFASMRELFSGAHLIQDWLGEAAKRI 1038
Query: 878 A------SENQPVR------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE- 918
+ +E PV+ WTTPLGLP VQPYR + V T+LQ + +
Sbjct: 1039 SKSVRTDAEENPVQSSDKPSHLSSVIWTTPLGLPCVQPYRVTKKQIVHTNLQDIVISDPF 1098
Query: 919 -TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNR 977
+V ++Q++AFPPNFVHSLD +HM+MTA AC ++GL FA VHDSYWTHACDVD MN
Sbjct: 1099 GASQVDARKQQSAFPPNFVHSLDATHMLMTARACGQSGLAFAAVHDSYWTHACDVDTMNT 1158
Query: 978 ILREKFVELYEMPIFENLLDSFQKSF 1003
+RE+FV L+ + L D F+K +
Sbjct: 1159 HIREQFVALHGENLIVKLRDEFEKRY 1184
>gi|146413615|ref|XP_001482778.1| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC 6260]
Length = 1303
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 309/929 (33%), Positives = 464/929 (49%), Gaps = 116/929 (12%)
Query: 134 TVAEAVSSTDVEEDVSIVEEIQ-------ELLQEMKKEEQREGENGSGRNRRRVARGMGS 186
+ E +S ++E V+++ ++ + + +K +EQR+ N
Sbjct: 313 VLEEFISDIELELGVNVLHNVKGHKKDYFAVYRSLKSDEQRQKFN-------EALDLFNE 365
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRD 243
+ R L++R V E W+ +EY E+ QK K+L W+ +
Sbjct: 366 SRQRQLELRGVDGAREKWK---HEYEEM------QKRGA-FAIHKNLNVQLFKWYSDMLP 415
Query: 244 AIAKEQERCR------------------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLL 285
+ KE + CR K + YAPY +P MAVIT+ +L+ L
Sbjct: 416 YVEKEAKICRKIVAGELDVKDCKPEEAAQMKERSYYAPYMILVPPKKMAVITILELLKLN 475
Query: 286 MTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQE 345
TGG R +A +G A+E E + N V E+
Sbjct: 476 STGGIVDGMRTARAVISVGKALELEYK-----------------------SQNLVEAERR 512
Query: 346 KLRKKVTDLIKKQKLPAVRRIVKGQD--DFKPWGQDARAKVGSRVIELLTQTAYIQSPAD 403
L KK+ + +K+ R+ ++ W AKVGS + LL A +
Sbjct: 513 SLSKKLKTTNQWKKILRTRKDYSKENPNATNEWDYPIYAKVGSVLTSLLMHVAKVSVKGT 572
Query: 404 Q--LADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA-RHMVIP-YM 459
+ PAF H + + ++ GV++ + +++ L A + V P +
Sbjct: 573 DPVTGKQVKTMQPAFHHTYQFLQ------GQRLGVLKVHKSLIRQLAGNALSNAVQPQLL 626
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTK 518
PMLVPP W Y+ G + F + ++R + + +K L+ V+E L+ LG T
Sbjct: 627 PMLVPPRPWVAYNDGGYLFSQNNIIRIKDSAETNAYLKAASDMGNLDQVYEGLNVLGETC 686
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK--WQWKVRNVKKEN 576
W +N+ V V+ W+ G + D+ + P D L+K +Q ++R + +
Sbjct: 687 WTINHEVFDVISHYWNSGEKFLDIPSIVEELDIPPPPPIDADPLQKTDYQRRLRQLMNDA 746
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
SQRCD +L +AR E+ Y+ HNVDFRGRAYP+ P+ NHLG+D+ R + F
Sbjct: 747 ASARSQRCDTNYRLEIARAFLGEK-LYFSHNVDFRGRAYPLSPHFNHLGNDMTRSLFLFW 805
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+G+ +G GL W+KIHLANLY G++K R+ F +++L I +SA PL WW K
Sbjct: 806 DGKKVGARGLEWIKIHLANLY--GINKAPLHERVQFVDDNLHHIIESAKNPLAEDAWWKK 863
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
AE P+Q L VC L A P ISH+P+HQDG+CNGLQHYAALG D GA VNL+
Sbjct: 864 AEKPWQVLGVCFELKRAYDLEDPTEHISHLPIHQDGTCNGLQHYAALGGDFEGARQVNLI 923
Query: 757 AREKPADVYSGIAARVL--VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVY 814
++P DVYS +A+ V V + +A + A+F L ++ RK+VKQTVMT+VY
Sbjct: 924 PADRPQDVYSFVASLVQKRVDAEAEAGNEYALF--------LRDKITRKVVKQTVMTNVY 975
Query: 815 GVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
GVT++GA QI++++ + + ++ ++ S Y + ++ E+F A I WLGE A
Sbjct: 976 GVTFVGAVAQIQKQIDQYFSKEDQDKVADYSRYLTMLVFASMRELFSGAHLIQDWLGEAA 1035
Query: 875 KIIA------SENQPVR------------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ 916
K I+ +E PV+ WTTPLGLP VQPYR + V T+LQ + +
Sbjct: 1036 KRISKSVRTDAEENPVQSSDKPSHLSSVIWTTPLGLPCVQPYRVTKKQIVHTNLQDIVIS 1095
Query: 917 RE--TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
+V ++Q++AFPPNFVHSLD +HM+MTA AC + GL FA VHDSYWTHACDVD
Sbjct: 1096 DPFGASQVDARKQQSAFPPNFVHSLDATHMLMTARACGQLGLAFAAVHDSYWTHACDVDT 1155
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSF 1003
MN +RE+FV L+ + L D F+K +
Sbjct: 1156 MNTHIREQFVALHGENLIVKLRDEFEKRY 1184
>gi|358383250|gb|EHK20918.1| hypothetical protein TRIVIDRAFT_171102 [Trichoderma virens Gv29-8]
Length = 1317
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 296/810 (36%), Positives = 430/810 (53%), Gaps = 105/810 (12%)
Query: 261 YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH-KFLEK 319
Y P+ Q +A +T+ ++ L G + + I A++ + ++ K L +
Sbjct: 361 YGPFVQQGEPARLAAVTILSVINLGTVLGVEKGIPISRLITHIAKAVQDDTEMYQKELAE 420
Query: 320 TKKKNETK----NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
K + + K K D+ G E+N + + D ++QK ++ +P
Sbjct: 421 RKARRQRKLRFVGKPDKSGKEANG-----QDANPALLDATEQQK-------TMEENSREP 468
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAP--PDIFPAFTHALRTVSKETKGGSKK 433
W +A+VGS ++++L ++A + A+ PAF H +T+ ++ KK
Sbjct: 469 WSIQIKAQVGSILLQMLIESAKVNVVAEGSTSKELISQYQPAFNH--QTLLRK----GKK 522
Query: 434 YGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTH-GAKQ 491
G + N +++ L+R + ++PM+V P WT + +G + ++R G +
Sbjct: 523 VGALFFNTHLVEQLKREPMGDFIAKHLPMVVEPKPWTSFSEGGFLDSKTSLVRVKPGDVE 582
Query: 492 QR----DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN- 546
Q+ +KR Q VF+ LD LG T W +N L+V+ W+ G +AD+ N
Sbjct: 583 QKLYSNAAIKRGDMTQ---VFKGLDILGKTAWIINKDTLNVMMEAWNSGEEIADIPPLNP 639
Query: 547 DVPLPEKPETEDEAQLRK-WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
+ P +P++ + +RK W V+ ++ E HSQRC + L+L +AR +++ Y+P
Sbjct: 640 KLEAPTEPDSSADPLVRKNWIRAVKAIENERSGLHSQRCFMNLQLEIARAFRNQT-IYFP 698
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HNVD+RGRAYPM YLNH+G+D R IL+FA+G+ LG GL WLKIHLAN+Y G+DK S
Sbjct: 699 HNVDYRGRAYPMPTYLNHMGADHARAILKFAKGKELGVRGLRWLKIHLANVY--GLDKAS 756
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
+ R AF++ ++ +I DSA PL G RWWLK EDP+QCL+ C L AL P FISH
Sbjct: 757 FDEREAFSDENVANIIDSATNPLGGSRWWLKGEDPWQCLSACFELKAALELPDPTKFISH 816
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
+PVHQDG+CNGLQHYAALG DT GA VNL E+PADVYS +A+ V I +D ++ A
Sbjct: 817 LPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADVYSAVASLVKEAIAKDMEKGNA 876
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL--------KERGAPME 837
F AL K + RK+VKQTVMT+VYGVT+ GA+ QI +++ KE G P
Sbjct: 877 -FAQALNGK-----ITRKVVKQTVMTNVYGVTFAGAKKQICKQIDALYPNLGKECGIPN- 929
Query: 838 EAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKIIASENQ---------- 882
S Y AK AL MF+ A I WLGE C + ++ Q
Sbjct: 930 ----ILLSTYIAKQVFQALATMFRGAHDIQYWLGEIGGRVCRALTPAQLQQIVDSYGEGE 985
Query: 883 ------------------------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ- 911
V WTTPL +PVVQPYRK +KT LQ
Sbjct: 986 DGASRASKTRKKAPTGKKVEFDDLVQQFRSSVVWTTPLRMPVVQPYRKTTAREIKTCLQA 1045
Query: 912 -ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHAC 970
I L +T+ V ++Q FPPNF+HSLD SHM+++A+ C GL FA VHDS+WTHA
Sbjct: 1046 VIYPLSDQTDPVNRRKQLQGFPPNFIHSLDASHMLLSALECDARGLDFAAVHDSFWTHAG 1105
Query: 971 DVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
D+D MN +LRE F+ ++E + L F+
Sbjct: 1106 DLDVMNEVLREAFIRIHEEDVVGRLGAEFE 1135
>gi|50543664|ref|XP_499998.1| YALI0A12001p [Yarrowia lipolytica]
gi|49645863|emb|CAG83927.1| YALI0A12001p [Yarrowia lipolytica CLIB122]
Length = 1345
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 287/844 (34%), Positives = 443/844 (52%), Gaps = 82/844 (9%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
++MR ++ E W A++ ++ + + W E + + +E ++
Sbjct: 421 IEMRGIEAAGELWAAKASQSQQF----------TGMSKFQEQMHSWQEQMIPLVQEEIKK 470
Query: 252 CRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI--IGDAIEQ 309
+ PY + M+++T+ ++M L T G + V + +G A+E
Sbjct: 471 AGETEINTDLYPYLKLMSPKTMSIVTIIEMMRLQTTVGRSVESGVKTTNLVTSVGQALEI 530
Query: 310 EVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG 369
E R ++ EK KK KK+T L ++ K+ +
Sbjct: 531 EYRCSQWSEKLGKK---------------------RTFLKKLTGLKRRLKVMEMIHAEDL 569
Query: 370 QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQL---ADAPPDIFPAFTHALRTVSKE 426
+D W D RAKVG+ ++++L + A + A A D+ P F H+ + V ++
Sbjct: 570 EDTVPAWAIDVRAKVGALLVDILIKVARMPVTAKDPVTGASVTADV-PVFCHSYQLVKRQ 628
Query: 427 TKGGSKKYGVIECNPLVLK-------GLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFL 479
+ G++ + L+++ G E + + ++PML P W + G ++
Sbjct: 629 ------RLGMVRMHDLMIQKVISTDIGAESSEAFVTPQFLPMLAEPKPWVAWKTGGYYVS 682
Query: 480 PSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538
+ VMR + +Q + ++ L+ +F L+ LG+T W VN++V ++ ++W+ G
Sbjct: 683 QASVMRARESSEQTAYLDTASERGDLDRLFAGLNKLGSTAWTVNSKVFDIMSKVWNTGEA 742
Query: 539 LADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMK 597
D+ N D LPE PE D +W+ + + + HS RCD KL +AR
Sbjct: 743 YLDIPAVNTDNSLPECPEHNDPVARSEWRKMCTVILNKRKSDHSVRCDSNYKLEIARAHL 802
Query: 598 DEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY 657
E+ ++PHNVDFRGRAYP+ P+ NHLGSDL RG+L+F G+ LG+ GL WLKIH+ANL+
Sbjct: 803 GEK-LHFPHNVDFRGRAYPLSPHFNHLGSDLSRGLLQFWHGKELGEEGLRWLKIHMANLH 861
Query: 658 AGGVDKLSHEGRLAFTENHLDDIFDSADKPL-EGRRWWLKAEDPFQCLAVCINLTEALRS 716
G K + + R+ FTE+++ I + + PL E W +A+ P+Q LA L A
Sbjct: 862 GAG--KANFDDRVKFTEDNMAKIRAAVENPLAEENSIWREADYPWQFLAASYELVAAYDL 919
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P F+SHIPV QDGSCNGLQHYAALG D GA VNL +KP DVY+ +A+ V ++
Sbjct: 920 PDPSKFVSHIPVQQDGSCNGLQHYAALGGDIDGARQVNLTPFDKPQDVYAEVASIVSELV 979
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
+ DA+ + A L+ +++RK+VK TVMT+VYGVT+IGA+ QI+ +LKE+ +
Sbjct: 980 KEDAENGNPL------ADFLVGKINRKIVKPTVMTNVYGVTFIGAKAQIQTQLKEQYGDV 1033
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP------------- 883
A++ + Y A+ +A+ +F A I WL ECA+ I +P
Sbjct: 1034 --AQIDEMAHYLAQRVFSAMRSLFTNAHDIQDWLTECARNITKTVRPSANLQEIHSGESL 1091
Query: 884 --VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE--KVMVKRQRTAFPPNFVHSL 939
V WT+P+GLPVVQPYRK + T+LQ + LQ V ++Q AFPPNFVHSL
Sbjct: 1092 SSVIWTSPIGLPVVQPYRKAAKRQFDTALQSVFLQDAFTLYGVQSRKQAQAFPPNFVHSL 1151
Query: 940 DGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
D SHM++TA+ K ++FA VHDSYWTHA DV MN++LRE+FV+L+ M I NL
Sbjct: 1152 DASHMLLTALNLDK-DVSFASVHDSYWTHAADVPHMNKVLREQFVKLHSMDIVGNLQKEL 1210
Query: 1000 QKSF 1003
Q +
Sbjct: 1211 QMRY 1214
>gi|456754161|gb|JAA74232.1| polymerase (RNA) mitochondrial (DNA directed) [Sus scrofa]
Length = 1219
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 270/693 (38%), Positives = 391/693 (56%), Gaps = 56/693 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
+PW ++G R+ E+L Q + S D+ + P H S ++
Sbjct: 547 QPWSLSVLVQLGKRLAEMLVQAVRMPSNLATPRDSN-TLIPVLYHVYSFRS------FRQ 599
Query: 434 YGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGA 489
G+++ +P + LE A + +PML PP+ WT GA P+ +MR+ G
Sbjct: 600 IGILKPHPAFRQLLETAAEGTLTFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSVEGT 659
Query: 490 KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP 549
+Q + ++R +L +AL LGN W+VN VL ++ +++ G V +
Sbjct: 660 QQHQVLLERCRPAELHGALDALTQLGNCAWQVNGPVLDLVLELFNNKGCPHLGVPAPPLE 719
Query: 550 LPEKPETED--------------EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
P PE +A+LR+ ++ K RE HS R + +LS+A+
Sbjct: 720 APRPPEGRQAPDACLQPNVPPTQKAELRR---ELARRLKMAREMHSLRTEALYRLSMAQH 776
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL+WLKIHL N
Sbjct: 777 LRGR-IFWLPHNMDFRGRTYPFPPHFNHLGSDLARALLEFAQGRPLGPQGLNWLKIHLVN 835
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
L G S + R + ++DI DSAD+P+ GR+WW++A++P+Q LA C+ + A+R
Sbjct: 836 L-TGLKKHESLQARRDLADELMEDILDSADRPMTGRKWWMEADEPWQTLACCMEIARAVR 894
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
+ P ++SH PVHQDGSCNGLQHYAALGRD+ GAA+VNL+ + P DVYSG+AA+V V
Sbjct: 895 APDPTAYVSHFPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSDLPQDVYSGVAAQVEVF 954
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-RGA 834
++DA++ V A++L + RK+VKQTVMT VYGVT G R QI+RRL+E +
Sbjct: 955 RRQDAEQGMRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELQDF 1008
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
P E ++ AS Y + +L EMF R I WL + A++IA V W TPLG+P+
Sbjct: 1009 PQE--FVWEASHYLVRQVFNSLQEMFSGTRSIQRWLTDSARLIAHMGSAVEWVTPLGIPI 1066
Query: 895 VQPYRKLGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 951
+QPY + + T+K LQ L+ ++K +Q+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1067 IQPYHRDSKVTIKGGLQNLSFNSSVDTSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHC 1126
Query: 952 RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF---PKL-- 1006
+ GLTF VHD +WTHA DV MN++ RE+FV+L+ PI +L + F P+
Sbjct: 1127 YRKGLTFVSVHDCFWTHAADVAVMNQVCREQFVQLHSQPILHDLSRFLRNRFCSDPRASK 1186
Query: 1007 ---------VFPPLPERGDFDLREVLGSPYFFN 1030
+P+ G FDL +V S YFF+
Sbjct: 1187 NIWASRLMDTLLSVPKPGTFDLEQVKHSTYFFS 1219
>gi|148699721|gb|EDL31668.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_c [Mus
musculus]
Length = 1166
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 268/647 (41%), Positives = 374/647 (57%), Gaps = 38/647 (5%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A P H S +
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARQGAQRSIPVLYHVYSFRS------YR 587
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 588 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 647
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD--RN 546
Q + +++ P QL +AL LGN WRVN +L ++ +I+ G + V R+
Sbjct: 648 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 707
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +++LRK ++ K RE HS R + +LS+A+ ++
Sbjct: 708 EAPRPARYQLPPGSTPVHKSELRK---ELARCLKVAREMHSLRSEALYRLSLAQHLR-HR 763
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 764 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 822
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+ + A+RS P
Sbjct: 823 KKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPA 882
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
+ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V Q+DA
Sbjct: 883 AYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDA 942
Query: 781 QRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
+ + LR A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 943 K-------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 995
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY
Sbjct: 996 -VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYH 1054
Query: 900 KLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
+ + VK LQ +TL E++K +Q+ FPPNF+HSLD SHMM+TA+ C + GL
Sbjct: 1055 RESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGL 1114
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F
Sbjct: 1115 IFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRF 1161
>gi|358396537|gb|EHK45918.1| hypothetical protein TRIATDRAFT_292168 [Trichoderma atroviride IMI
206040]
Length = 1435
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 291/840 (34%), Positives = 435/840 (51%), Gaps = 94/840 (11%)
Query: 230 MKSLFLGWFEPLRDAIAKE-----QERCRMAKH-----KVAYAPYFDQLPADMMAVITMH 279
M W + IA+E Q + +K + Y P+ Q +A +T+
Sbjct: 441 MSQNMASWMSAMETRIAQELRLIEQSEAKKSKSDWDLTRCIYGPFIQQGDPARLAAVTIL 500
Query: 280 KLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNT 339
++ + G + + I A++++ +++ E ++K + K GD+S
Sbjct: 501 SVINIGTVLGVEKGTPISRLITHIAKAVQEDTEMYQ-KELAERKARRQRKLKFVGDKSKD 559
Query: 340 VTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ 399
E ++ + D ++++ ++ PW +A+VGS ++++L ++A I
Sbjct: 560 KAEASEDIKTPLLDTAEQER-------TLEENSKNPWTLQIKAQVGSILLQMLIESAKIN 612
Query: 400 SPADQLADAP--PDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT-ARHMVI 456
A+ PAF+H +T+ ++ KK G + N +++ L+R +
Sbjct: 613 VVAESSTSKELISQYQPAFSH--QTLLRK----GKKVGALFFNNHLIEQLKREPVGDFIA 666
Query: 457 PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA--KQQRDTVKRTPKKQLEPVFEALDTL 514
++PM+V P W+ + +G + +R +Q+ + + +E VF+ LD L
Sbjct: 667 KHLPMVVEPKPWSSFTEGGFLDCKTSFVRVKPGDIEQKLYSTAAIKRGDMEQVFKGLDVL 726
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLAD---LVDRNDVPLPEKPETEDEAQLRKWQWKVRN 571
G T W +N L+V+ W+ G +A+ L + DVP PE + D + W V+
Sbjct: 727 GKTAWVINKDTLNVMMEAWNSGEEIANIPPLHPKFDVP-PEPDSSADPLARKSWIRAVKA 785
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
++ E HSQRC + L+L +AR +++ Y+PHNVD+RGRAYPM YLNH+G+D R
Sbjct: 786 IENERSGLHSQRCFMNLQLEIARAFRNQT-IYFPHNVDYRGRAYPMPTYLNHMGADHARS 844
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
IL+FA+G+ LG GL WLKIHLAN+Y G+DK S + R AF +++ +I DSA PL+G
Sbjct: 845 ILKFAKGKELGVRGLRWLKIHLANVY--GLDKASFDEREAFANDNVANIIDSATNPLKGS 902
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
RWWLK EDP+QCL+ C L AL P F+S++PVHQDG+CNGLQHYAALG DT GA
Sbjct: 903 RWWLKGEDPWQCLSACFELKAALELPDPTKFVSNLPVHQDGTCNGLQHYAALGGDTWGAK 962
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL E+PADVYS +A V I +D + A AK L ++ RK+VKQTVMT
Sbjct: 963 QVNLEPGERPADVYSAVANLVKEAIAKDLEAGNAF------AKALDGKITRKVVKQTVMT 1016
Query: 812 SVYGVTYIGARDQIKRRLK----ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIM 867
+VYGVT+ GA+ QI +++ G E L S Y AK AL MF+ A I
Sbjct: 1017 NVYGVTFSGAKKQICKQIDALYPNLGKECEIPNLL-LSTYIAKQVFQALATMFRGAHDIQ 1075
Query: 868 SWLGE-----CAKIIASENQ---------------------------------------- 882
WLGE C + ++ Q
Sbjct: 1076 YWLGEIGGRVCRALTPAQLQQIVDSYGEGEGSTPRSSRSKAKPSSGKKVEFDDLVQQFRS 1135
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLD 940
V WTTPL +PVVQPYRK +KT LQ I + +T+ V ++Q FPPNF+HSLD
Sbjct: 1136 SVVWTTPLKMPVVQPYRKTTAREIKTCLQAVIYPMSDQTDPVNRRKQLQGFPPNFIHSLD 1195
Query: 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
SHM+++A+ C GL FA VHDS+WTHA D+D MN +LRE F+ ++E + L F+
Sbjct: 1196 ASHMLLSALECNDRGLDFAAVHDSFWTHAGDLDVMNEVLREAFIRIHEEDVVGRLGAEFE 1255
>gi|407919789|gb|EKG13012.1| DNA-directed RNA polymerase bacteriophage type [Macrophomina
phaseolina MS6]
Length = 1456
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 305/906 (33%), Positives = 451/906 (49%), Gaps = 128/906 (14%)
Query: 193 KMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPY--MKSLFLGWFEPLRDAIAKE-- 248
+MRQ ++E ++ + + +R+ +M + + L M++L W+ + +E
Sbjct: 367 RMRQDRLEEDSIDASIERWRQEHQNMQKMGITSALQTKPMEALMWQWYSAMVPLFKQEFE 426
Query: 249 -------QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAAC 301
+E + ++ P+ + + +A + + +V Q A
Sbjct: 427 SINAVYGEEEPDLLDERLVTGPFLEAFTPEKLAATALIVTVSTFGMPDHFNGIKVSQIAM 486
Query: 302 IIGD--AIEQEVRIHKFLEKTKK--KNETKNKEDEEGDESNTVTTEQEKLRKKVTD---- 353
IG A+E + + + + +N + + S TV + K ++ D
Sbjct: 487 AIGKQLAMEHSLMVAQTVHSNHSVYRNVSARRLRTLLKYSKTVNPNETKSVQETNDEGDI 546
Query: 354 LIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI------QSPADQLAD 407
++ Q L + W +AKVG+ + + + A I + QL
Sbjct: 547 AMRYQSLKHLE-----------WAPLIKAKVGALCLSKILEAAKIPVTREEKETRRQLTS 595
Query: 408 APPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA-RHMVIPYMPMLVPPV 466
P AF HA +K G+I + VL L R R PM+V P+
Sbjct: 596 NEP----AFYHAT------VYSAGRKSGMIRLHQQVLDKLRREPMRGSFGTKYPMIVEPL 645
Query: 467 KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRT------PKKQLEPVFEALDTLGNTKWR 520
WTGY +G + P +++ ++++D +R K ++ V L LG T W+
Sbjct: 646 PWTGYRRGGYLRYPEPIIK----EKKQDDAQRIYAMAAIEKGDMDQVLAGLSVLGKTAWK 701
Query: 521 VNNRVLSVLDRIWSCG---GRLADLVDRNDVPLPEKPET--EDEAQLRKWQWKVRNVKKE 575
VN V V+ W+ G G++A + + P PE +D+A + ++ N K
Sbjct: 702 VNRDVFKVVVEAWNTGEPIGKIAPENPKMEYPPEPGPEASKKDKALYLNEKKRIDNAKMS 761
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
HSQRC +L VAR KDE FY+PHN+DFRGRAYP+ P LNHLG+DL RG+L F
Sbjct: 762 ---YHSQRCFQNFQLEVARAFKDEV-FYFPHNMDFRGRAYPIPPLLNHLGADLARGLLTF 817
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
A+G+ LG GL WLKIHLAN+Y G DK S + R AF H+ DI+DS + PL GR+WWL
Sbjct: 818 AKGKQLGPVGLSWLKIHLANVY--GYDKASLKDREAFAMEHIQDIYDSCENPLTGRKWWL 875
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
KAEDP+QCLA C L A S P +ISH+PVHQDG+CNGLQHYAALG D GAA VNL
Sbjct: 876 KAEDPWQCLATCFELKHAFDSPDPSQYISHLPVHQDGTCNGLQHYAALGGDKAGAAQVNL 935
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
++P+D+YS +A V + +DA+ A++L + RK+VKQTVMT+VYG
Sbjct: 936 EPGDRPSDIYSAVAEIVKKEVAKDAESGDRF------ARILDGNITRKVVKQTVMTNVYG 989
Query: 816 VTYIGARDQIKRRLKERGAPME---EAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE 872
VT+ GAR Q+ ++L E P E ++ LF Y AK+ ALG+MF A+ I WLG
Sbjct: 990 VTFTGARLQVIKQL-EAILPEEYQVDSLLFTMGGYVAKLIFKALGQMFNGAQEIQDWLGA 1048
Query: 873 CAKIIASENQP------------------------------------------------V 884
CA I++ P V
Sbjct: 1049 CANRISTALTPEQIDVIEAQLKGKHGEANSHPDSRYRKKLTKKKSSVLTKDLSSQFSATV 1108
Query: 885 RWTTPLGLPVVQPYRKLGRHTVKTSLQILTL--QRETEKVMVKRQRTAFPPNFVHSLDGS 942
WTTPL +PVVQPYR+ + T LQ L++ + T+ + ++Q AFPPNF+HSLD +
Sbjct: 1109 IWTTPLKMPVVQPYRRSKSREITTVLQYLSIVQPKSTDAIDKRKQLQAFPPNFIHSLDAT 1168
Query: 943 HMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKS 1002
HM+++A+ C + GL+FA VHDS+WTHA DV MNR+LR+ FV ++ I L + F
Sbjct: 1169 HMLLSALKCNEIGLSFASVHDSFWTHAADVPLMNRVLRDAFVRMHSEDIVGRLHEEFSIR 1228
Query: 1003 FPKLVF 1008
+ ++
Sbjct: 1229 YQDCIY 1234
>gi|302902552|ref|XP_003048669.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
gi|256729603|gb|EEU42956.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
Length = 1342
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/694 (39%), Positives = 390/694 (56%), Gaps = 85/694 (12%)
Query: 371 DDFKPWGQDARAKVGSRVIELLTQTAYIQS-PADQLA-DAPPDIFPAFTH--ALRTVSKE 426
D K W R ++GS +++ L +TA + +QL + + PAF+H A+R
Sbjct: 497 DARKVWSTTVRIRIGSILVKSLMETAEVNVIKQNQLTREKISQVQPAFSHMHAMR----- 551
Query: 427 TKGGSKKYGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYV-- 483
KG KK GV NP +++ +R + ++PM+ P W + G FL S V
Sbjct: 552 -KG--KKIGVFALNPFLVEQFKREPVGDFLAKHLPMIAEPQPWKNMNTGG--FLQSKVSL 606
Query: 484 --MRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD 541
+++ +Q+ T + ++ VF+ LD LG T WR+N+++L V+ W+ G +A+
Sbjct: 607 VRIKSGDDEQKLYTKAAIQRGDMDQVFKGLDVLGKTPWRINDKLLDVMVEAWNTGHEIAN 666
Query: 542 LVDRNDV-PLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ N V P +PET D R W +++V+ HSQRC + L+L +AR + ++
Sbjct: 667 IPALNPVLQSPPEPETPDPLVRRTWMRALKSVENHRSALHSQRCFMNLQLEIARAFR-KQ 725
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
Y+PHNVD+RGRAYP+ YLNH+G+D R +L+FA G+ LG++GL WLKIH+AN+Y G
Sbjct: 726 VIYFPHNVDYRGRAYPLPTYLNHMGADHMRSLLKFANGKELGETGLRWLKIHMANVY--G 783
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
DK S + R AF ++LD I +SA PL G RWWLK EDP+QCLA C L A P
Sbjct: 784 FDKASFDEREAFATDNLDKIIESATNPLHGSRWWLKGEDPWQCLAACFELKAAHDLPDPT 843
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
F+S++PVHQDG+CNGLQHYAALG DT GA VNL+ +PADVYS +A V I ++A
Sbjct: 844 KFVSNLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGSRPADVYSAVANLVRESISKEA 903
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL--------KER 832
+ A+ A++ ++ RK+VKQTVMT+VYGVT+ GA+ Q+ +++ KE
Sbjct: 904 ESKEAL------AEICKDKITRKVVKQTVMTNVYGVTFEGAKKQVAKQIDALYPNLHKES 957
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGEC------------------- 873
G P + Y AK AL MF+ A I WLGEC
Sbjct: 958 GIPH-----LVVATYIAKHIFMALATMFRGAHDIQYWLGECGGRVCRALTPAQLDQIAEE 1012
Query: 874 ---------AKIIA---SENQ----------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
AK+ A ++NQ V WTTPL +PV QPYRK ++T LQ
Sbjct: 1013 YQNPSDKATAKVRAKKPAKNQLEELSAQFRSTVVWTTPLRMPVAQPYRKSYMKEIRTCLQ 1072
Query: 912 ILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
++ +T+ V ++Q FPPNF+HSLD SHM+++A+ C + GL FA VHDS+WTHA
Sbjct: 1073 SISYPAFDQTDPVNRRKQLQGFPPNFIHSLDASHMLLSALKCDELGLNFAAVHDSFWTHA 1132
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
DVD MN +LR+ F+ ++E + L F+ +
Sbjct: 1133 ADVDVMNTVLRDAFIRIHEEDVVGRLATEFKARY 1166
>gi|238879434|gb|EEQ43072.1| hypothetical protein CAWG_01309 [Candida albicans WO-1]
Length = 1280
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 301/888 (33%), Positives = 450/888 (50%), Gaps = 99/888 (11%)
Query: 156 ELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELL 215
E+ ++K EEQR+ N N + R + +++R ++ E W+
Sbjct: 334 EMYSKLKTEEQRQAFN-EALNVFNLERQ------KQIEIRGIEGAKEKWKH--------- 377
Query: 216 MDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQERCRM---------------AKH 257
D E + +L K L W + + + KE + C AK
Sbjct: 378 -DFEESQKRGDLNLSKGLNAQCYKWLQDVLPVLEKEYKLCEALINGNNSVIEKDDPNAKD 436
Query: 258 KVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFL 317
+ YAP+ ++ D +IT+ +L L TGG R +A +G AIE E RI
Sbjct: 437 RAMYAPFILKISPDKAIIITILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRIGL-- 494
Query: 318 EKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWG 377
+ KK+N+ Q+ L ++ L++ R + KG + W
Sbjct: 495 -QAKKENKL---------------FSQKHLSPQLQKLMR-------RTMQKGNESTPEWD 531
Query: 378 QDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVI 437
RA++G ++ +L A + + D PAF H ++ ++ + GVI
Sbjct: 532 DATRARIGGVLVSILMSVAKVNVRKETPQGLIEDFHPAFYHGMQFIA------GNRVGVI 585
Query: 438 ECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDT 495
+ + + L T+ I +PMLV P W + G + + ++R + +
Sbjct: 586 KVHTDISNILSGTSLTESIQPQALPMLVEPKPWNSFYGGGSLYSKTPLVRVKDSPETEAY 645
Query: 496 VKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP-LPEK 553
+K ++ L VFE L+ LGNT W VN +V +V+ W+ G + ++ P LP+
Sbjct: 646 LKAANERGNLTGVFEGLNVLGNTAWTVNKKVFNVISHYWNSGEEFLSIPPVSEEPQLPQD 705
Query: 554 -PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRG 612
P D +L E SQRCD +L +AR E+ ++PHN+DFRG
Sbjct: 706 IPGNSDPQKLLHHTTSKYQALDEYISNKSQRCDNNYRLEIARAFIGEK-LFFPHNLDFRG 764
Query: 613 RAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAF 672
RAYP+ P+ NHLG DL R + F +G+ LG+ GL+WLKI LAN+Y GVDK S R+ F
Sbjct: 765 RAYPISPHFNHLGGDLTRSLFLFWDGKELGEEGLNWLKIQLANVY--GVDKESLAKRVEF 822
Query: 673 TENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDG 732
+L+ + +SA P WW KAE P+Q L+VC L EA + P F+SH+PVHQDG
Sbjct: 823 VNENLEKVLESAADPFATDAWWQKAEKPWQALSVCFELAEAYKLDDPTKFVSHLPVHQDG 882
Query: 733 SCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR 792
+CNGLQHYAALG D GA VNL +KP DVY+ +A V ++ DA++ +
Sbjct: 883 TCNGLQHYAALGGDVEGANQVNLNPSDKPQDVYTYVAKLVETRVKADAEKGDEL------ 936
Query: 793 AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVT 852
A L ++ RK+VKQTVMT+VYGVT+IGA +QI++++ ++A+ A+ Y A
Sbjct: 937 AIFLQDKIKRKVVKQTVMTNVYGVTFIGAIEQIRKQIIHLFP--KDADHHAAARYLAVQV 994
Query: 853 LTALGEMFQAARGIMSWLGECAKIIA------------SENQ---PVRWTTPLGLPVVQP 897
++ E+F+ A I +WL E AK I SE + V WTTPLGLP VQP
Sbjct: 995 FASIRELFENAHFIQAWLTESAKRITKSVSLDFGESQYSEQELLSTVIWTTPLGLPCVQP 1054
Query: 898 YRKLGRHTVKTSLQILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
YR + +KT++Q L + T V ++Q+ FPPNF+HSLD +HM+MTA C +
Sbjct: 1055 YRLHKKKQLKTAVQDLNIVMPSNTSAVDSRKQQNGFPPNFIHSLDATHMLMTATKCAEFD 1114
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
L FA VHDS+WTHA DV +MNRI+RE+FV+L+ + E L + F + +
Sbjct: 1115 LNFASVHDSFWTHAADVPQMNRIIREQFVKLHTTNLIELLKEEFSERY 1162
>gi|260942581|ref|XP_002615589.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
gi|238850879|gb|EEQ40343.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
Length = 1311
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 301/806 (37%), Positives = 429/806 (53%), Gaps = 100/806 (12%)
Query: 243 DAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
D + E + K + YAPY +P ++VIT+ +L+ L TGG R +A
Sbjct: 442 DMTSLSSEEKKQMKDRSFYAPYLVLIPPKKLSVITILELLKLNSTGGIVDGMRTARAVIS 501
Query: 303 IGDAIEQEVRIH-------KFL-EKTKKKNETKN---KEDEEGDESNTVTTEQEKLRKKV 351
+G AIE E + +FL K K N+ K GDE+ ++TE
Sbjct: 502 VGKAIELEYKSQGLVAAEKRFLGRKAKSSNQWKKILRNRKPSGDEAG-LSTE-------- 552
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ------SPADQL 405
W AK+GS + LL A + + Q+
Sbjct: 553 ------------------------WDYPVYAKLGSVLTSLLLHVAKVPVTGTDPTTGKQV 588
Query: 406 ADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA--RHMVIPYMPMLV 463
P AF H + V+ ++ G+I+ + ++K L + +PML+
Sbjct: 589 KGKQP----AFHHTYQFVN------GQRLGIIKLHKNLVKQLASNTLINSVQPQLLPMLL 638
Query: 464 PPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK-KQLEPVFEALDTLGNTKWRVN 522
PP WT +++G + F PS ++R + + VK + L+ V+ L+ LG+T W +N
Sbjct: 639 PPSDWTSHNQGGYRFTPSTLVRIKDSAETVAYVKAASEANNLDDVYRGLNVLGHTPWTIN 698
Query: 523 NRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK--WQWKVRNVKKENRERH 580
+VL V+ + W+ G D+ D P P + L K +Q KVR+V E
Sbjct: 699 AKVLEVISQYWNTGEAFLDIPPVVDEPELPPPLPLNAEPLEKVEYQRKVRHVLNEAAAYR 758
Query: 581 SQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRT 640
SQRCD KL +AR E+ Y+PHNVDFRGRAYP+ P+LNHLG+DL R + F EGR
Sbjct: 759 SQRCDTNYKLEIARAFVGEK-MYFPHNVDFRGRAYPLPPHLNHLGNDLTRSLFLFWEGRE 817
Query: 641 LGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDP 700
LG+ GL WLKIHLAN+Y G+DK R F +++L+ +F+SA P G +WW K E P
Sbjct: 818 LGERGLEWLKIHLANVY--GMDKAPLAQRAQFVDDNLEHVFESARDPTGGSKWWTKGEKP 875
Query: 701 FQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK 760
+Q L+VC L EA + P ++SH+PVHQDG+CNGLQHYAALG D GA VNLV ++
Sbjct: 876 WQVLSVCFELLEAYKLDDPTKYVSHVPVHQDGTCNGLQHYAALGGDIEGAKQVNLVPADR 935
Query: 761 PADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIG 820
P DVY +A V +Q +A+ A L ++ RK+VKQTVMT+VYGVT++G
Sbjct: 936 PQDVYKFVAGLVEKRLQAEAEAGNKY------AIFLQGKISRKVVKQTVMTNVYGVTFVG 989
Query: 821 ARDQIKRRLKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECAKII 877
A QI+++L G E+ + + YA +T ++ E+F+ A I WLGE AK I
Sbjct: 990 AVAQIEKQL---GHLFEKDDYDSVTLYARYLTSLVFASMRELFEGAHLIQDWLGESAKRI 1046
Query: 878 A-------------SENQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE- 918
+ + N+P V WTTPLGLP VQPYR R V T+LQ +++
Sbjct: 1047 SKSVRIDYEEKSAKNANKPSHLSSVIWTTPLGLPCVQPYRATKRQIVSTNLQDISISDPF 1106
Query: 919 -TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNR 977
+V ++Q+TAFPPNF+HSLD +HM+MTA AC + L FA VHDSYWTHACDVD+M+
Sbjct: 1107 GATQVDSRKQQTAFPPNFIHSLDATHMLMTAAACGEDNLHFASVHDSYWTHACDVDKMSE 1166
Query: 978 ILREKFVELYEMPIFENLLDSFQKSF 1003
+R +FV+L+E + L D F++ +
Sbjct: 1167 HIRNQFVKLHEENLIVKLRDEFERRY 1192
>gi|326437615|gb|EGD83185.1| single-subunit RNA polymerase [Salpingoeca sp. ATCC 50818]
Length = 1301
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 281/706 (39%), Positives = 397/706 (56%), Gaps = 65/706 (9%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W VG +I+L+ + A + + + D PAF H G+K++G
Sbjct: 610 WTPRMLGAVGGEMIDLVLRKATLSAITGRAEDKE---LPAFYHTYEF------EGTKRFG 660
Query: 436 VIECNPLVLK------------GLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYV 483
I + V G R + +PMLV P WTG GA P +
Sbjct: 661 FIRTHDTVQDYSYNFVATNAQLGKNVFRRSIDAVNLPMLVLPKPWTGVRTGASLVSPVTI 720
Query: 484 MRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV 543
MRT + + L+ +F+AL L + WRVN +V V+ + + +L
Sbjct: 721 MRTFDSHFHHYALLAETTHLLDDMFDALTYLSSMAWRVNTKVFDVVRAAFEAEVGVEELA 780
Query: 544 DRNDV----PLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
+ P+P + K+Q +V +K++ E +SQR + LKL VA+ ++D+
Sbjct: 781 IAPHIIQPPPVPARTADMSAEDKAKYQRQVMEHRKQSSEAYSQRTTLHLKLMVAQALRDQ 840
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
+ FY PHN+DFRGRAY + PYL H+G DL RG+L FAE + LGK+GL WLKIHLAN+Y
Sbjct: 841 D-FYLPHNLDFRGRAYTIAPYLTHIGDDLSRGLLVFAEKKPLGKNGLRWLKIHLANVY-- 897
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPL----EGR-RWWLKAEDPFQCLAVCINLTEAL 714
G DK S + R F E+++ + ++ PL +G WWL+ ++P+Q LAVC L +A+
Sbjct: 898 GNDKCSLDDREKFAEDNMHHVEETVRNPLRFLEDGEPMWWLQGDNPWQVLAVCNELHDAM 957
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV---AREKPADVYSGIAAR 771
+ +PE F S PVHQDG+CNGLQHYAALGRD GA VNLV ++P DVYS +A
Sbjct: 958 CAPNPEEFESGFPVHQDGTCNGLQHYAALGRDVEGARHVNLVRVPEDDRPQDVYSAVART 1017
Query: 772 VLVIIQRDAQRD-------PAVFPDALR-AKLLLSQ--VDRKLVKQTVMTSVYGVTYIGA 821
+ +QR AQ D P A A LL++Q + RK+VKQTVMT+VYGVT++G
Sbjct: 1018 IDTHLQRHAQGDFSSTSKLPVSHEVAQELASLLVAQGPMKRKIVKQTVMTNVYGVTFVGG 1077
Query: 822 RDQIKRRLKE-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE 880
R+QI R+LK + P E+ ++ + Y + +LGE+F+ A+ I WL + AK IA+
Sbjct: 1078 REQIGRQLKAAKVVPPEK--VYATASYLTALVFLSLGEIFEKAQLIQQWLSQQAKKIAAS 1135
Query: 881 NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVH 937
+PV W TP+G+PVVQPY + T T+LQ + L ++ V +Q +AFPPNFVH
Sbjct: 1136 GEPVAWVTPIGMPVVQPYHNAIKSTFSTNLQTIWLVETGNPSQLPAVGKQGSAFPPNFVH 1195
Query: 938 SLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD 997
SLD +HMMMTA ACRK G+ FA VHDSYWTHA VD+M+R RE+FV ++ P+ ++L
Sbjct: 1196 SLDSTHMMMTANACRKDGVAFASVHDSYWTHAATVDQMSRHTREQFVNIHSRPLLKDLHS 1255
Query: 998 SFQKSFP--KLVFP-----------PLPERGDFDLREVLGSPYFFN 1030
F+ + K V P P PE+G+FD+ EVL S YFF+
Sbjct: 1256 FFRLQYEGRKYVRPRGNDETTVEIDPCPEQGEFDINEVLNSKYFFS 1301
>gi|241948027|ref|XP_002416736.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223640074|emb|CAX44320.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1300
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 293/849 (34%), Positives = 438/849 (51%), Gaps = 85/849 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD---AIAKEQER 251
RQ +IE E A +++ D E +L K L +E L+D + KE ++
Sbjct: 379 RQKQIEIRGIEGAKEKWKH---DFEESHKRGDLNLSKGLNAQCYEWLQDMLPVLEKEYKQ 435
Query: 252 CRM---------------AKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARV 296
C AK + YAP+ +L D ++T+ +L L TGG R
Sbjct: 436 CEALINGNNAVIEKDDPNAKDRAMYAPFLLKLSPDKAIIVTILELFKLHATGGVISGFRA 495
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK 356
+A +G AIE E RI + KK+N+ +++ ++ + +KL +
Sbjct: 496 YKAIQSVGKAIEAEYRIGL---QAKKENKLFSRKH--------LSPQLQKLMR------- 537
Query: 357 KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAF 416
R + KG + W RA++G ++ +L A ++ + D PAF
Sbjct: 538 -------RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKLKVTRETPQGLIEDSHPAF 590
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKG 474
H+++ + G + GVI+ + + L T+ I +PMLV P W Y G
Sbjct: 591 FHSMQFI------GGNRVGVIKVHTEISNILSGTSLTESIQPQALPMLVEPKPWNSYYGG 644
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
+ + ++R + + +K ++ L+ VFE L+ LG T W VN +V +V+ W
Sbjct: 645 GGLYSKTPLVRVRDSPETEAYIKAANERGNLKAVFEGLNVLGKTAWTVNKKVFNVISHYW 704
Query: 534 SCGGRLADLVDRNDVP-LPEK-PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
+ G + ++ P LP+ P+ D L + E SQRCD +L
Sbjct: 705 NSGEEFLSIPPVSEEPRLPKDVPDNSDPEVLLNYTMSKFRALDEYMSNKSQRCDNNYRLE 764
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+AR E+ Y+PHN+DFRGRAYP+ P+ NHLG DL R + F +G+ LG+ GL WLKI
Sbjct: 765 IARAFIGEK-LYFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWDGKELGEEGLRWLKI 823
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
LAN+Y GVDK S R+ F + +L+ +F SA PL WW KAE P+Q L+VC L
Sbjct: 824 QLANVY--GVDKESLTKRVEFVDANLEKVFASAADPLASNAWWQKAEKPWQALSVCFELA 881
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
EA + P F+SH+PVHQDG+CNGLQHYAALG D GA VNL +KP DVYS +A
Sbjct: 882 EAYKLDDPTKFVSHLPVHQDGTCNGLQHYAALGGDVEGANQVNLKPADKPQDVYSYVAKL 941
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V ++ DA++ A L ++ RK+VKQTVMT+VYGVT++GA +QI++++
Sbjct: 942 VEARVRADAEKGDEF------AIFLQDKIKRKIVKQTVMTNVYGVTFVGAIEQIRKQIAH 995
Query: 832 RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN---------- 881
+A+ + Y A+ ++ E+F+ A I WL E AK I
Sbjct: 996 LYP--RDADHNMPARYLARQVFASIRELFENAHFIQDWLTESAKRITKSVSLDFGESKYL 1053
Query: 882 -----QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL--TLQRETEKVMVKRQRTAFPPN 934
V WTT LGLP VQPYR+ + +KT++Q + + T V ++Q+ FPPN
Sbjct: 1054 ESELLSTVIWTTALGLPCVQPYRQHKKKQLKTAVQDMHIIVPSNTSAVDSRKQQNGFPPN 1113
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
F+HSLD +HM+MTA C + L FA VHDS+WTHA DV +MN+I+R++FV+L+ + E
Sbjct: 1114 FIHSLDATHMLMTATKCTENDLQFASVHDSFWTHAADVPQMNKIIRDQFVKLHTTNLIEL 1173
Query: 995 LLDSFQKSF 1003
L + F + +
Sbjct: 1174 LKEEFTERY 1182
>gi|68473800|ref|XP_719003.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
gi|68474009|ref|XP_718901.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440694|gb|EAK99997.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440800|gb|EAL00102.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
Length = 1300
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 295/849 (34%), Positives = 436/849 (51%), Gaps = 85/849 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +IE E A +++ D E + +L K L W + + + KE +
Sbjct: 379 RQKQIEIRGIEGAKEKWKH---DFEESQKRGDLNLSKGLNAQCYKWLQDVLPVLEKEYKL 435
Query: 252 CRM---------------AKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARV 296
C AK + YAP+ ++ D +IT+ +L L TGG R
Sbjct: 436 CEALINGNNSVIEKDDPNAKDRAMYAPFILKISPDKAIIITILELFKLHSTGGVVRGFRA 495
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK 356
+A +G AIE E RI + KK+N+ Q+ L ++ L++
Sbjct: 496 YKAIQSVGKAIEAEYRIGL---QAKKENKL---------------FSQKHLSPQLQKLMR 537
Query: 357 KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAF 416
R + KG + W RA++G ++ +L A + + D PAF
Sbjct: 538 -------RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIEDFHPAF 590
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKG 474
H ++ ++ + GVI+ + + L T+ I +PMLV P W + G
Sbjct: 591 YHGMQFIA------GNRVGVIKVHTDISNILSGTSLTESIQPQALPMLVEPKPWNSFYGG 644
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
+ + ++R + + +K ++ L VFE L+ LGNT W VN +V +V+ W
Sbjct: 645 GSLYSKTPLVRVKDSPETEAYLKAANERGNLTGVFEGLNVLGNTAWTVNKKVFNVISHYW 704
Query: 534 SCGGRLADLVDRNDVP-LPEK-PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
+ G + ++ P LP+ P D +L E SQRCD +L
Sbjct: 705 NSGEEFLSIPPVSEEPQLPQDIPGNSDPQKLLHHTTSKYQALDEYISNKSQRCDNNYRLE 764
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+AR E+ ++PHN+DFRGRAYP+ P+ NHLG DL R + F +G+ LG+ GL+WLKI
Sbjct: 765 IARAFIGEK-LFFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWDGKELGEEGLNWLKI 823
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
LAN+Y GVDK S R+ F +L+ + +SA P WW KAE P+Q L+VC L
Sbjct: 824 QLANVY--GVDKESLAKRVEFVNENLEKVLESAADPFATDAWWQKAEKPWQALSVCFELA 881
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
EA + P F+SH+PVHQDG+CNGLQHYAALG D GA VNL +KP DVY+ +A
Sbjct: 882 EAYKLDDPTKFVSHLPVHQDGTCNGLQHYAALGGDVEGANQVNLNPSDKPQDVYTYVAKL 941
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V ++ DA++ + A L ++ RK+VKQTVMT+VYGVT+IGA +QI++++
Sbjct: 942 VETRVKADAEKGDEL------AIFLQDKIKRKVVKQTVMTNVYGVTFIGAIEQIRKQIIH 995
Query: 832 RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA-------SENQ-- 882
++A+ A+ Y A ++ E+F+ A I +WL E AK I E+Q
Sbjct: 996 LFP--KDADHHAAARYLAVQVFASIRELFENAHFIQAWLTESAKRITKSVTLDFGESQYS 1053
Query: 883 ------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILT--LQRETEKVMVKRQRTAFPPN 934
V WTTPLGLP VQPYR + +KT++Q L + T V ++Q+ FPPN
Sbjct: 1054 EQELLSTVIWTTPLGLPCVQPYRLHKKKQLKTAVQDLNIVMPSNTSAVDSRKQQNGFPPN 1113
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
F+HSLD +HM+MTA C + L FA VHDS+WTHA DV +MNRI+RE+FV+L+ + E
Sbjct: 1114 FIHSLDATHMLMTATKCAEFDLNFASVHDSFWTHAADVPQMNRIIREQFVKLHTTNLIEL 1173
Query: 995 LLDSFQKSF 1003
L + F + +
Sbjct: 1174 LKEEFSERY 1182
>gi|340516609|gb|EGR46857.1| predicted protein [Trichoderma reesei QM6a]
Length = 1298
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 300/850 (35%), Positives = 445/850 (52%), Gaps = 112/850 (13%)
Query: 220 EQKLAPNL-PYMKSLFLGWFEPLRDAIAKEQERCRMAKH--KVAYAPYFDQLPADMMAVI 276
E ++ NL +M ++ ++ LR E ++ + K + Y P+ Q +A +
Sbjct: 310 EGSMSQNLASWMSAMETRIYQELRLIEQSEAKKSKSDKDLTRCIYGPFIQQGDPARLAAV 369
Query: 277 TMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHK---------------FL---E 318
T+ ++ L G + + I A+++++ +++ F+ +
Sbjct: 370 TILSVINLGTVLGVEKGLPISRLITHIAKAVQEDIEMYQKELAERRARRERKLRFVGGKD 429
Query: 319 KTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQ 378
K KK +K+ EE TTEQ+ + ++ PW
Sbjct: 430 KASKKASSKDAGKEEEPPVLVDTTEQQSAME--------------------ENSRSPWSL 469
Query: 379 DARAKVGSRVIELLTQTAYI-----QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
+A+VGS ++++L ++A I +S + +L PAF H S KG KK
Sbjct: 470 QIKAQVGSILLQMLMESAKINVVVERSESKELIS---QYQPAFNHQ----SVLRKG--KK 520
Query: 434 YGVIECNPLVLKGLERT-ARHMVIPYMPMLVPPVKWTGYDKGAHF-FLPSYVMRTHGAKQ 491
G + N +++ L+R + ++PM+V P W + +G S+V G +
Sbjct: 521 VGALFFNTRLVEQLKREPVGDFIAKHIPMVVEPKPWQSFTEGGFLDSTTSFVRVKPGDVE 580
Query: 492 QR----DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN- 546
Q+ +KR Q VF+ LD LG T W +N L+V+ W+ G +A++ N
Sbjct: 581 QKLYSNAAIKRGDMTQ---VFKGLDVLGKTPWIINKDTLNVMMEAWNSGEEIANIPPLNP 637
Query: 547 DVPLPEKPETEDEAQLRK-WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
++ +P +P++ + +RK W V+ ++ E HSQRC + L+L +AR +++ Y+P
Sbjct: 638 NLTIPPEPDSSADPLVRKNWIRAVKAIENERSGLHSQRCFMNLQLEIARAFRNQT-IYFP 696
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HNVD+RGRAYPM YLNH+G+D R IL+FA G+ LG GL WLKIHLAN+Y G+DK S
Sbjct: 697 HNVDYRGRAYPMPTYLNHMGADHARAILKFARGKELGVRGLRWLKIHLANVY--GLDKAS 754
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
+ R AF + ++ +I DSA PL G RWWLK EDP+QCL+ C L AL P F+SH
Sbjct: 755 FDEREAFADENVANIIDSATNPLNGSRWWLKGEDPWQCLSACFELKAALELPDPTKFVSH 814
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
+PVHQDG+CNGLQHYAALG DT GA VNL ++PADVYS +A V I +D + A
Sbjct: 815 LPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGDRPADVYSAVADLVKQAIAKDKENGNA 874
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK----ERGAPMEEAEL 841
F +AL K + RK+VKQTVMT+VYGVT+ GA+ QI +++ + G + + +
Sbjct: 875 -FAEALDGK-----ITRKVVKQTVMTNVYGVTFSGAKKQICKQIDALYPDLGEKVGISNM 928
Query: 842 FGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKIIASENQ-------------- 882
S Y AK AL MF+ A I WLGE C + ++ Q
Sbjct: 929 L-LSTYIAKQVFQALATMFKGAHDIQYWLGEIGGRVCRALTPAQLQQIARKSATTARKKV 987
Query: 883 -----------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRT 929
V WTTPL +PVVQPYRK +KT LQ I + +T+ V ++Q
Sbjct: 988 EFDDLVQQFRSSVVWTTPLRMPVVQPYRKTTAREIKTCLQAVIYPMSDQTDPVNRRKQLQ 1047
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNF+HSLD SHM+++A+ C GL FA VHDS+WTHA D+D MN +LRE F+ ++E
Sbjct: 1048 GFPPNFIHSLDASHMLLSALECHARGLDFAAVHDSFWTHAGDLDVMNEVLREAFIRIHEE 1107
Query: 990 PIFENLLDSF 999
+ L F
Sbjct: 1108 DVVGRLGAEF 1117
>gi|189206131|ref|XP_001939400.1| DNA-directed RNA polymerase, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187975493|gb|EDU42119.1| DNA-directed RNA polymerase, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1430
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 302/900 (33%), Positives = 451/900 (50%), Gaps = 119/900 (13%)
Query: 195 RQVKIETEAWEKAANEYR---ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
RQ+++E + + A N ++ E L D+ + P ++++ W++ L A K E
Sbjct: 368 RQLQMEQDGVDAAVNRWKHENEKLADIGIHGVMNTKP-IQAMMYSWYKALVPAFKKRIEH 426
Query: 252 CR---------MAKHKV-AYAPYFDQLPADMMAVITMHKL-MGLLMTGGEHGRARVVQA- 299
+ M K +V +Y + ++ + +A IT+ + + GE A V A
Sbjct: 427 AKQVLSESSKDMMKEEVNSYGVWLERCKPEKLAAITVARTTQAAVRNKGEDNSALKVSAL 486
Query: 300 ACIIGDAI------EQEVRIHKFLEKTKKKNETK--NKEDEEGDESNTVTTEQEKLRKKV 351
+ IG I E + R FL+K +K+ NK + T ++E +
Sbjct: 487 STSIGSEIQDYLDSESQARRDAFLKKQRKQTRLDLFNKLSKNPPVLQTEPGQRESVAS-- 544
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAP 409
D +K +P V AR K+G+ +E L A + A + +
Sbjct: 545 LDSFEKTTIPLV----------------ARTKLGAMCLENLLSCATLTVTAKDPRTGEEK 588
Query: 410 PDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY-MPMLVPPVKW 468
AF H + KK G I + VL L + H + +PM++ P W
Sbjct: 589 SRSMAAFHHQVGFHQ------GKKLGFIVPHHEVLTKLRTESVHSIHNVRLPMVIEPKPW 642
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTP--KKQLEPVFEALDTLGNTKWRVNNRVL 526
+ ++ G ++ LP V+R G + ++ + V LD LG W++N V
Sbjct: 643 SSFEDGGYYTLPQKVVRQKGGDSSQRAYAQSAIENGDMSKVMAGLDVLGRVPWQINAPVF 702
Query: 527 SVLDRIWSCGGRLADLVDRNDVPL---PEKPETEDEAQLR-KWQWKVRNVKKENRERHSQ 582
V+ R W+ G L L+ V P++P + Q R KW ++ + HSQ
Sbjct: 703 DVMARAWNAGESLGSLIGEKAVAALERPKEPPADATYQERAKWGKALKEYDNQIGGLHSQ 762
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
RC +L AR +E+ Y+PH+VDFRGRAYP+ P LNH+GSD+ RG+L+FA G+ LG
Sbjct: 763 RCFQNFQLETARAFLNEKKIYFPHSVDFRGRAYPIPPILNHIGSDVARGLLKFAHGKELG 822
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
GL WLKIHLANLY G DK S R F ++LD+I DSA PL+GRRWW KAEDP+Q
Sbjct: 823 TVGLQWLKIHLANLY--GFDKASLREREQFAMDNLDEIRDSASNPLDGRRWWAKAEDPWQ 880
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
CLA CI L AL S P FIS +PVHQDG+CNGLQHYAALG D GA VNL ++P
Sbjct: 881 CLACCIELKNALDSPDPARFISQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQ 940
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
D+Y+G+A V ++ +DA + + AK + + RK+VK+TVMT+VYGVT++GA+
Sbjct: 941 DIYTGVAELVKEMVTKDAAKGSEL------AKFVEGHISRKVVKRTVMTNVYGVTFMGAK 994
Query: 823 DQIKRRLKE---RGAPMEEAELFGA-SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
+Q+ L+ + P E+ + G+ + Y A ALG++F A+ I WLGEC + I
Sbjct: 995 EQVHDELRNIFPKFEPTEKVKSLGSVALYIAYAIFEALGKIFNGAQEIQYWLGECGERIT 1054
Query: 879 S----------------------------------------------EN--QPVRWTTPL 890
+ EN + WTTPL
Sbjct: 1055 TSLTKEQIRRIHNRYEGIDLAKEAYDSKFTPPKKLTSAQLAKFNKSMENFTTGIIWTTPL 1114
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTA 948
+P+VQPYRK ++T +Q +T+ +++ K V ++Q AFPPNF+HSLD SHM+++A
Sbjct: 1115 RMPIVQPYRKDSVQKIRTKIQDITVSKKSAKDEVDKRKQLQAFPPNFIHSLDASHMLLSA 1174
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+ + GL FA VHDS+WTHA D+ +N ILR+ FV ++ + E L F + ++
Sbjct: 1175 LKASEMGLDFAAVHDSFWTHASDIPNLNVILRDAFVRMHSEDVVERLAAEFSARYKGALY 1234
>gi|329663210|ref|NP_001192480.1| DNA-directed RNA polymerase, mitochondrial [Bos taurus]
Length = 1224
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 272/697 (39%), Positives = 390/697 (55%), Gaps = 61/697 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLAD-APPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ E+L + +Q P+ A P + P H S +
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSFRS------FR 600
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HG 488
+ G+++ +P + E A +I +PML PP+ WT GA P+ +MR+ G
Sbjct: 601 QIGILKPHPAFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEG 660
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
+Q + ++R P +L +AL LGN WRVN RVL ++ ++ G RL
Sbjct: 661 TQQHQLLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPT 720
Query: 547 DVPLPEK----------PETE--DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
+ P P + PE D+A++R+ ++ K RE S R D +LS+A+
Sbjct: 721 EAPRPPEGRQTPKGCLLPEASPADKAEMRR---ELARRLKVAREMQSLRADALYRLSLAQ 777
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
+++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL
Sbjct: 778 HLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLI 836
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NL G + S + R + + ++DI DSA++P+ GR+WW++A++P+Q LA C+ + + +
Sbjct: 837 NL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQVV 895
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
S P T+ISH PVHQDGSCNGLQHYAALGRD+ GA +VNL + P DVYS +AA+V V
Sbjct: 896 HSPDPTTYISHFPVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQVEV 955
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-RG 833
++DA++ V A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 956 FRRQDAKQGVRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELED 1009
Query: 834 APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLP 893
P E ++ AS Y + +L EMF R I WL E A++I+ V W TPLG+P
Sbjct: 1010 FPQE--FVWEASHYLVRQVFNSLQEMFSGTRSIQRWLTESARLISLTGSAVEWITPLGVP 1067
Query: 894 VVQPYR---KLGRHTVKTSLQILTLQRET---EKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
++QPY K+ +K LQ LT +K +Q+ FPPNF+HSLD +HMM+T
Sbjct: 1068 IIQPYHRDSKVMVRAIKGGLQSLTFSSSVDTNQKPNTLKQKNGFPPNFIHSLDSTHMMLT 1127
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP--- 1004
A+ C + GLTF VHD +WTHA DV MN++ RE+FV L+ PI +L K F
Sbjct: 1128 ALYCYRKGLTFVSVHDCFWTHAADVGVMNQVCREQFVRLHSQPILHDLSRFLIKRFCSDS 1187
Query: 1005 -----------KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P G FDL +V S +FF+
Sbjct: 1188 RTSKSMWVSRLKDTLLSVPPTGTFDLDQVKRSTFFFS 1224
>gi|224120774|ref|XP_002330948.1| predicted protein [Populus trichocarpa]
gi|222873142|gb|EEF10273.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 254/439 (57%), Positives = 292/439 (66%), Gaps = 71/439 (16%)
Query: 47 MWRNVAKQAI----SLHLKKP-FSRAYSFLGISQDSILRDKVKFVCLDMV-PRGIHEVGS 100
MWRNVAKQA S L P F R YSFLG S++ I +K+KF L+ PR +
Sbjct: 1 MWRNVAKQATLKSQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSLNNTSPR----LSF 56
Query: 101 GRIGEILNHEDYMGRTSFGVLKNDNF--------WCPRGYATVAEAVSSTDVEEDVSIVE 152
IGEI HED+MG+ SF L+N + +CPRGY +VAEAVSSTDVE++VS +
Sbjct: 57 RAIGEISTHEDFMGKPSFIFLRNSSSTNGNWCAGFCPRGYVSVAEAVSSTDVEDNVSGAD 116
Query: 153 EIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYR 212
E +E G+GS K+R+L+ RQVKIE EAWE A EY+
Sbjct: 117 EEEEAT---------------------CNPGIGSRKHRVLRRRQVKIEAEAWELATKEYK 155
Query: 213 ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADM 272
ELL DMCE KLAPNLPYMKSLFLGWFEP DAIAKEQE R K + YAPYFD LPAD
Sbjct: 156 ELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIAKEQELIRTGKSRQGYAPYFDLLPADK 215
Query: 273 MAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDE 332
M+VI MH+L ++MTGGEHG ARVV AAC+IGDAIEQE
Sbjct: 216 MSVIAMHQLAAMVMTGGEHGCARVVTAACMIGDAIEQE---------------------- 253
Query: 333 EGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELL 392
EQE LRKKVTDLIKKQKLPAVR+IVKG+DD KPW DARAKVGSR+IELL
Sbjct: 254 ----------EQENLRKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELL 303
Query: 393 TQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR 452
QTAYIQ P DQLAD+P + PAF H RTVS E K G+KKYGVI+C+PLVLKGLE+TAR
Sbjct: 304 LQTAYIQPPCDQLADSPSEPRPAFVHTFRTVSYENKKGAKKYGVIQCDPLVLKGLEKTAR 363
Query: 453 HMVIPYMPMLVPPVKWTGY 471
HMVIPYMPMLVPP++W GY
Sbjct: 364 HMVIPYMPMLVPPLRWRGY 382
>gi|296485392|tpg|DAA27507.1| TPA: CG4644-like [Bos taurus]
Length = 1224
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 272/697 (39%), Positives = 390/697 (55%), Gaps = 61/697 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLAD-APPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ E+L + +Q P+ A P + P H S +
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSFRS------FR 600
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HG 488
+ G+++ +P + E A +I +PML PP+ WT GA P+ +MR+ G
Sbjct: 601 QIGILKPHPAFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEG 660
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
+Q + ++R P +L +AL LGN WRVN RVL ++ ++ G RL
Sbjct: 661 TQQHQLLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPT 720
Query: 547 DVPLPEK----------PETE--DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
+ P P + PE D+A++R+ ++ K RE S R D +LS+A+
Sbjct: 721 EAPRPPEGRQTPKGCLLPEASPADKAEMRR---ELARRLKVAREMQSLRADALYRLSLAQ 777
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
+++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLKIHL
Sbjct: 778 HLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLI 836
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NL G + S + R + + ++DI DSA++P+ GR+WW++A++P+Q LA C+ + + +
Sbjct: 837 NL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQVV 895
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
S P T+ISH PVHQDGSCNGLQHYAALGRD+ GA +VNL + P DVYS +AA+V V
Sbjct: 896 HSPDPTTYISHFPVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQVEV 955
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-RG 833
++DA++ V A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 956 FRRQDAKQGVRV------AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELED 1009
Query: 834 APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLP 893
P E ++ AS Y + +L EMF R I WL E A++I+ V W TPLG+P
Sbjct: 1010 FPQE--FVWEASHYLVRQVFNSLQEMFSGTRSIQRWLTESARLISLTGSAVEWITPLGVP 1067
Query: 894 VVQPYR---KLGRHTVKTSLQILTLQRET---EKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
++QPY K+ +K LQ LT +K +Q+ FPPNF+HSLD +HMM+T
Sbjct: 1068 IIQPYHRDSKVMVRAIKGGLQSLTFSSSVDTNQKPNTLKQKNGFPPNFIHSLDSTHMMLT 1127
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP--- 1004
A+ C + GLTF VHD +WTHA DV MN++ RE+FV L+ PI +L K F
Sbjct: 1128 ALYCYRKGLTFVSVHDCFWTHAADVGVMNQVCREQFVRLHSQPILHDLSRFLIKRFCSDS 1187
Query: 1005 -----------KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P G FDL +V S +FF+
Sbjct: 1188 RTSKSMWVSRLKDTLLSVPPTGTFDLDQVKRSTFFFS 1224
>gi|255585837|ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
gi|223526525|gb|EEF28787.1| conserved hypothetical protein [Ricinus communis]
Length = 395
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/405 (65%), Positives = 301/405 (74%), Gaps = 39/405 (9%)
Query: 47 MWRNVAKQAISLHLKK-----PFSRAYSFLGISQDSILRDKVK----FVCLDMVPRGIHE 97
MWRNVAKQ IS K P S YSFLG+SQ+ DK K + C +V
Sbjct: 1 MWRNVAKQTISRAQSKSLSSHPLSSTYSFLGLSQEPSFTDKCKLSPLYACSSLV------ 54
Query: 98 VGSGRIGEILNHEDYMGRTSFGVLKN-DN-----------FWC----PRGYATVAEAVSS 141
G R+GEI+ +ED+MG+ FG++ N DN + C PRGY +VAEAVSS
Sbjct: 55 -GFCRLGEIVPYEDFMGKPGFGLVGNKDNSNSSHMSMCNGYLCSGFYPRGYVSVAEAVSS 113
Query: 142 -TDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIE 200
TDVEEDVS+VEE+QELLQEM++EE RE E RR RGMGS KY+MLK RQVKIE
Sbjct: 114 STDVEEDVSVVEEVQELLQEMRREEAREKEL-----IRRKERGMGSKKYQMLKKRQVKIE 168
Query: 201 TEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVA 260
TEAWE A EY+ELLMDMCE+KLAPNLPYMKSLFLGWFEP RDAI KEQE R+ K++ A
Sbjct: 169 TEAWEWAVKEYKELLMDMCEKKLAPNLPYMKSLFLGWFEPFRDAILKEQELIRVGKNRTA 228
Query: 261 YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKT 320
+APYFDQLPADMMAVITMHKL+ L+MTGGEHG ARVV AAC+IG AIEQEVRIHKFLEKT
Sbjct: 229 FAPYFDQLPADMMAVITMHKLVALVMTGGEHGCARVVAAACLIGAAIEQEVRIHKFLEKT 288
Query: 321 KKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDA 380
KK+N +K++EE DESN EQEKLRKKVTDLIKKQKLPAVR+IVKG DD + W QD
Sbjct: 289 KKRNSNDSKKNEE-DESNGAVKEQEKLRKKVTDLIKKQKLPAVRQIVKGHDDSQSWTQDT 347
Query: 381 RAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+AKVGSR+IELL QTAYIQ PADQLAD PPDI PAF H R V++
Sbjct: 348 KAKVGSRLIELLIQTAYIQPPADQLADGPPDIRPAFAHTFRNVTQ 392
>gi|449273005|gb|EMC82634.1| DNA-directed RNA polymerase, mitochondrial, partial [Columba livia]
Length = 1035
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 275/685 (40%), Positives = 392/685 (57%), Gaps = 53/685 (7%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQL-ADAPPDIFPAFTHALRTVSKETKGGSKKY 434
W ++G ++ELL + A + P + L P + P H S S +
Sbjct: 374 WPYVLLMRLGMHMLELLVRAAKV--PRNILNPRLEPKLIPVLYHIYSFRS------SGQV 425
Query: 435 GVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAK 490
G+I+ +P+ + + A + +PML PPV WT + GA + +MR GA
Sbjct: 426 GLIKPHPIFSQIMSDAAEATLTFNSSAIPMLCPPVPWTSPNFGAFVLNDTKLMRFVDGAV 485
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL 550
Q + +++ P L PV +AL+ LGN W++N VL ++ I++ G +R D+P
Sbjct: 486 QHQLLLEQCPPVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----ERLDIPP 540
Query: 551 P----EKPET--EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
P +P T A + + ++ KK+ E HS R D KLS+A ++D+ F++
Sbjct: 541 PVSEAPRPPTVPGGSAGSKTQKHELLLYKKKVAEMHSLRMDALYKLSIANYVRDKV-FWF 599
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGR YP PY NHLG+D+ R IL FAEGR LG GL WLKIHL NL G K
Sbjct: 600 PHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLVNL-TGLKKKN 658
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
+ + RL + +++I DSAD+PL GRRWW+ ++P+Q LA C+ + +A R P ++S
Sbjct: 659 ALQERLEYANEIMEEILDSADRPLTGRRWWMDTDEPWQALACCMEIAKASRCPDPAAYVS 718
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
H P+HQDGSCNGLQHYAALGRD +GA +VNL+ P DVYS +A +V ++DA++
Sbjct: 719 HFPIHQDGSCNGLQHYAALGRDLIGAISVNLMPCSVPQDVYSVVAQQVEEFRKKDAEQGV 778
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-RGAPMEEAELFG 843
+ A++L + RK+VKQTVMT VYGVT G R Q+++RLKE G P E L+
Sbjct: 779 RI------AQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQMEKRLKEIDGFP--EEYLWE 830
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR 903
AS Y K ++ EMF A R I +WL E AK+IA + V W TPLGLP+VQPY +
Sbjct: 831 ASQYLVKQVFNSIKEMFSATRDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYYRSKP 890
Query: 904 HTVKTSLQILTLQRETEKVMVK----RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFA 959
V T + L + K +Q+ AFPPNF+HSLD +HMM+TA+ C + GLTF
Sbjct: 891 TVVSTWCEHLLRRELRGLRAWKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCLRQGLTFV 950
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF------------PKLV 1007
VHD YWTHA VD MN+I R++FV L+ I ++L +++ KL+
Sbjct: 951 SVHDCYWTHALTVDVMNQICRQQFVALHSERILQDLSKFMLETYCSPGRETRALWQKKLM 1010
Query: 1008 --FPPLPERGDFDLREVLGSPYFFN 1030
+PE G+F+L++V+ S YFF+
Sbjct: 1011 EQLSNVPETGEFNLKKVMDSTYFFS 1035
>gi|396464712|ref|XP_003836965.1| similar to mitochondrial DNA-directed RNA polymerase [Leptosphaeria
maculans JN3]
gi|312213521|emb|CBX89951.1| similar to mitochondrial DNA-directed RNA polymerase [Leptosphaeria
maculans JN3]
Length = 1425
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 284/814 (34%), Positives = 416/814 (51%), Gaps = 104/814 (12%)
Query: 260 AYAPYFDQLPADMMAVITMHKLMGLLMTG-GEHGRARVVQAACI-----IGDAIEQEVRI 313
AY P+ Q + +A IT+ + + M G E G A + A + I DA+ EV +
Sbjct: 440 AYGPWLTQSKPEKLAAITVARGINSCMRGHKEDGTAMKISALSVSLGTDIQDALNSEVAV 499
Query: 314 HK--FLEKTKKKNETKNKED---EEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK 368
+ F+ K +K+ + E +E++T++ Q +V K+++P
Sbjct: 500 RRAAFIRKQRKQTRKQLVEKLSKNSPEEASTISATQSTTVPEVLPDFAKREIPL------ 553
Query: 369 GQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA--DQLADAPPDIFPAFTHALRTVSKE 426
R K+G+ +ELL + A + A + + AF H +
Sbjct: 554 ----------SIRTKLGAMCLELLLRAATMTVVAVDPKTGEEVSTNIAAFHHQV-----S 598
Query: 427 TKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT 486
G K ++ + L+ K + R + +PM+V P KWT Y+ G ++ P V+R
Sbjct: 599 FHQGKKVGYIVPHHDLMAKLRNDSVRAIANVKLPMVVEPKKWTSYEDGGYYTTPQKVVRQ 658
Query: 487 H-GAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD 544
G QR + ++ V LD LG W++NN V V+ + W+ G +A LV
Sbjct: 659 KLGDSAQRAYAQSAIDNGDMQKVLSGLDVLGKVPWQINNAVFDVMAQAWNNGESIAGLVS 718
Query: 545 RNDVPLPEKPETEDEAQLR---KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG 601
++ + PE +A R +W K++ + E HSQRC +L AR E+
Sbjct: 719 -EELRVQRPPEPPADAPYRDRAEWSKKLQEYENEKGGLHSQRCFQNFQLETARAFAREKA 777
Query: 602 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGV 661
Y+PH+VDFRGRAYP+ P LNH+GSD+ RG+L+FA G+ LG GL WLKIHLANLY G
Sbjct: 778 IYFPHSVDFRGRAYPIPPILNHIGSDISRGLLKFAHGKELGPVGLQWLKIHLANLY--GF 835
Query: 662 DKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
DK S R F + +D+I DSA PL GRRWW AEDP+QCLA C+ L A P
Sbjct: 836 DKASLREREQFALDKMDEIRDSATNPLTGRRWWASAEDPWQCLACCMELKSAFDLPDPTR 895
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
++S +PVHQDG+CNGLQHYAALG D GA VNL ++P D+Y+G+A V + DA
Sbjct: 896 YVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVAELVKEEVAEDAA 955
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE---RGAPMEE 838
+ + AK + + RK+VK+TVMT+VYGVT++GA+ Q+ LK P +
Sbjct: 956 KGKS------HAKFIEGYITRKVVKRTVMTNVYGVTFMGAKAQVYDELKNIFPNFVPTGK 1009
Query: 839 A-ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP-------------- 883
L + Y A +ALG++F A+ I WLGEC I + P
Sbjct: 1010 VFTLQSVAIYIAAKIFSALGKIFNGAQEIQYWLGECGDRITTSISPDQVQMIKARVEGDE 1069
Query: 884 --------------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
+ WTTPL +P+VQPYRK ++T +Q
Sbjct: 1070 SIFYDAKYKPPKKINDSMKKRLSKNMEAFKTSIIWTTPLKMPIVQPYRKDSVQIIRTKVQ 1129
Query: 912 ILTLQRET--EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
+T+Q+ T ++V ++Q AFPPNF+HSLD +HM+++A+ C + GL FA VHDS+WTHA
Sbjct: 1130 DITVQKRTMADQVDKRKQLQAFPPNFIHSLDATHMILSALKCSEMGLDFAAVHDSFWTHA 1189
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
D+ +N ILR+ FV ++ EN++D F
Sbjct: 1190 SDIPTLNVILRDAFVRMHS----ENIVDRLAAEF 1219
>gi|157124670|ref|XP_001654145.1| hypothetical protein AaeL_AAEL001847 [Aedes aegypti]
gi|108882774|gb|EAT46999.1| AAEL001847-PA [Aedes aegypti]
Length = 1271
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 268/690 (38%), Positives = 382/690 (55%), Gaps = 53/690 (7%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W + A VG + +L I A A+ P + PAF R +K K
Sbjct: 600 WPKAAVNGVGKFLYNILKNDLKINVNATSKANRQPKLVPAFYSLFRYEAKIAKEQ----- 654
Query: 436 VIECNPLVLKGLERTARHMV---IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQ 491
I+ +P+++K ++ + + I +PM+ PP W+ G + S ++R A Q
Sbjct: 655 -IKPHPVLIKLYRKSQQENLKFDINLVPMVCPPQPWSTPVNGGYILAKSDLIRLPQQAHQ 713
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
Q + + + + P +AL+ L + W+VN VL ++ +++ GG V LP
Sbjct: 714 QSERINEANPQDMYPTLDALNQLASIPWKVNEEVLDIVLEVFNNGGNAKLDVPEPPSSLP 773
Query: 552 EKPETEDEAQLRKWQWKVRNVKKENRERHSQR------CDIELKLSVARKMKDEEGFYYP 605
ET ++ + + V+K+ R Q CD +LS+A +D+ F+ P
Sbjct: 774 SIVETIPRNEMTGFD-RFNMVRKKMTHRRKQGDMYSLWCDALYRLSLANHFRDK-VFWLP 831
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
N+DFRGR YP+ P+LNHLG DL R ++ F + + LG G +WLK+H NL G + S
Sbjct: 832 QNIDFRGRVYPIPPHLNHLGHDLARCLMVFHQKKPLGPDGFNWLKLHCINL-TGLKKRDS 890
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
E RL + + +DDI DSAD+PL GR WW +++P+Q LA CI + + RS +P F+S
Sbjct: 891 VEDRLKYADEIMDDILDSADRPLTGRMWWSSSDEPWQTLACCIEIAKVHRSPNPAKFMSG 950
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
P+HQDGSCNGLQHYAALGRDT GA +VNL P DVYS +AA V +DA+ D
Sbjct: 951 FPIHQDGSCNGLQHYAALGRDTAGAVSVNLAPSPVPQDVYSAVAALVEDSRTKDAENDVK 1010
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
V AK+L + RK++KQTVMT+VYGVT GAR QI R+L E + ++ AS
Sbjct: 1011 V------AKILEGFIKRKVIKQTVMTTVYGVTRYGARKQIARQL-EYIDEFPKDWVWPAS 1063
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRH 904
Y T AL EMF +A+ I W +CA++I++ Q V W TPLGLPVVQPY + R
Sbjct: 1064 SYLTVKTFNALSEMFTSAKEIQDWFTDCARLISAVCAQNVEWVTPLGLPVVQPYNRSERQ 1123
Query: 905 TVKTSLQI---LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGV 961
++QI ++ EK + +Q+ AFPPNFVHSLD SHMM+T++ C +AGLTF V
Sbjct: 1124 ASSKTIQIPEHFSMD-SYEKPNIMKQKNAFPPNFVHSLDSSHMMLTSLFCERAGLTFISV 1182
Query: 962 HDSYWTHACDVDEMNRILREKFVELYEMPIFENL---------------------LDSFQ 1000
HD YWTHAC V MN+I RE+FV L+ PI E+L +D +
Sbjct: 1183 HDCYWTHACTVPTMNKICREQFVALHSEPILEDLSKFLVQKYSYNESEITNDGSVIDLTK 1242
Query: 1001 KSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ +++ P++GDFDLR+VL S YFF+
Sbjct: 1243 RKLNRILH-QYPDKGDFDLRQVLKSVYFFS 1271
>gi|340380901|ref|XP_003388960.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Amphimedon queenslandica]
Length = 554
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/551 (44%), Positives = 339/551 (61%), Gaps = 16/551 (2%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+PM VPP WT GA PS V+RTH + + + L PV ++L+ L
Sbjct: 10 IPMRVPPQPWTDATNGAFLLTPSSVVRTHYDSFHQQLLLKA-ADSLSPVLDSLNYLSLYP 68
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNVKKE 575
WRVNNR+L + I++ GG + + + D PLP+ + DE +K + +KKE
Sbjct: 69 WRVNNRILDMAIDIFNQGGDKSLDIPTDELFDKPLPKYIKDIDEETRKKIYKERFAIKKE 128
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
N E S + + LS+ +D F+ PHN+DFRGR YP+ P+L+H+ SDL R +L+F
Sbjct: 129 NAENFSLKMTLLYNLSMCNHFRDCL-FWLPHNMDFRGRVYPIPPHLSHMSSDLSRSLLQF 187
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
G+ LG+ GL WLKIH+A L+ G K S RL +T++ +DDI DSADKPLEGR WW
Sbjct: 188 GVGQPLGRRGLEWLKIHIATLH-GAKSKSSLNERLEYTDSIIDDIADSADKPLEGRGWWR 246
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A+ P+Q LA + L +ALRS PE FISH +HQDGSCNGLQHYAA+GRD GA VNL
Sbjct: 247 TADVPWQTLAASMELMDALRSGDPENFISHTTIHQDGSCNGLQHYAAMGRDVYGAHQVNL 306
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
V EKPA++Y+ +A V + DA D V AK+L +V RK+VKQTVMT VYG
Sbjct: 307 VPSEKPANLYAEVAKLVDEKRKVDATSDKNV----EIAKILEGKVHRKVVKQTVMTVVYG 362
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VT++G R QI+++LK + + LF AS Y + +L EMF+ +R I WL A+
Sbjct: 363 VTFVGGRLQIEKQLK---GTIPDKHLFEASSYLCGLVFESLSEMFERSRKIQDWLASSAR 419
Query: 876 IIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK---RQRTAFP 932
IA P +W TP+GLPVVQPY + + + +Q L L ++ +QR+A P
Sbjct: 420 KIALAGHPTQWVTPIGLPVVQPYHRKSIKKITSKIQRLQLLNNSDITFPPNPVKQRSAMP 479
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PNFVHSLD +HMM+TA+ C+K+G+ F VHDSYW H ++DEMN+ RE+FV L+ PI
Sbjct: 480 PNFVHSLDSTHMMLTALDCQKSGIPFVAVHDSYWAHGRNIDEMNKFCREQFVALHSQPIL 539
Query: 993 ENLLDSFQKSF 1003
++L + F+++F
Sbjct: 540 KDLANFFEENF 550
>gi|400595675|gb|EJP63467.1| DNA-dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1393
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 291/819 (35%), Positives = 431/819 (52%), Gaps = 111/819 (13%)
Query: 247 KEQERCRMAKHKVAYAPYFDQL-PADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
++ ERC Y P+ Q PA + AV + L + G + G A + + I
Sbjct: 432 RDIERC-------IYGPFIRQADPARLAAVTILSTLNAGALLGVDKGIA-IQKIINTIAK 483
Query: 306 AIEQEVRIHKFLEKTKKKNE-TKNKEDEEGDESNTV--TTEQEKLRKKVTDLIKKQKLPA 362
+++ + K +KT ++ + T + + E+N+V TE ++ K++ D K
Sbjct: 484 QAHEDIELQKKQKKTTRRRKVTYDASKAKPKEANSVPQITESQEATKRIEDSASK----- 538
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ--SPADQLADAPPDIFPAFTHAL 420
PW +A+VGS +++ L +A + + + PAFTH
Sbjct: 539 ------------PWSIQIKAQVGSFLLKALIDSAKVNVITRHPTTGERVSQYQPAFTH-- 584
Query: 421 RTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFL 479
+ + KG KK G++ + +++ L+R + ++PM+V P W G
Sbjct: 585 --IQQPRKG--KKVGMLIMHNTLVEQLKREPMGDFLAKHLPMIVEPKPWKSMHHGGFLES 640
Query: 480 PSYVMRTH-GAKQQRDTVKRTPK-KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
+ V+R G +QR K + ++ VF+ LD LG T W++N VL+V+ W+ G
Sbjct: 641 KTSVIRVQPGNVEQRLYAKAAVECGDMKQVFKGLDVLGQTAWQINRDVLNVMMEAWNTGE 700
Query: 538 RLAD---LVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
+A+ L + D+P E T + A +KW V+ ++ E HSQRC + L+L +AR
Sbjct: 701 EIANMPALEPKFDIP-AEPDSTVNPALHKKWIRDVKAIENERSGLHSQRCYMNLQLEIAR 759
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
+++ Y+PHNVD+RGRAYPM YLNH+G+D R +L FA+G+ LG +GL WLKIHLA
Sbjct: 760 AFRNQT-IYFPHNVDYRGRAYPMPTYLNHMGADHARAVLSFAKGKPLGVTGLRWLKIHLA 818
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
N+Y G+DK S E R AF +I +SA PL G RWWLKAEDP+QCLA C L AL
Sbjct: 819 NVY--GLDKASFEEREAFANESASNIIESATNPLHGSRWWLKAEDPWQCLAACFELKGAL 876
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
+ P T++SH+P+ QDG+CNGLQHYAALG DT GA VNL ++PADVYS +A V
Sbjct: 877 QLEDPTTYVSHLPIQQDGTCNGLQHYAALGGDTWGAKQVNLEPGDRPADVYSAVADLVKQ 936
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL----- 829
I +DA+ + +L ++ RK+VKQTVMT+VYGVT+ GA+ Q+ +++
Sbjct: 937 AITKDAKANNKF------GLVLDGKITRKVVKQTVMTNVYGVTFSGAKKQVCKQIDALYP 990
Query: 830 ---KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKIIASEN 881
K+ G P L A+ Y A+ TAL MF+ A I WLGE C + ++
Sbjct: 991 DLGKQCGIP----HLILAT-YIARHVFTALATMFRGAHDIQYWLGEIGGRVCRALTPAQL 1045
Query: 882 Q--------------------------------------PVRWTTPLGLPVVQPYRKLGR 903
Q V WTTPL +PV QPYRK
Sbjct: 1046 QHIADEYSNASADTKKGKAAKAPKTRKSGFDELTKQFRSTVVWTTPLRMPVAQPYRKTTA 1105
Query: 904 HTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGV 961
++T LQ L T+ V ++Q FPPNF+HSLD SHM+++A+ C + GL FA V
Sbjct: 1106 KEIRTCLQSLAYHSSDSTDPVNRRKQLQGFPPNFIHSLDASHMLLSALECHERGLDFAAV 1165
Query: 962 HDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
HDS+WTHA DV+ MN ++R+ F++++E + L F+
Sbjct: 1166 HDSFWTHAADVNVMNEVIRDSFIKIHEEDVIGRLAAEFE 1204
>gi|449491870|ref|XP_002193465.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Taeniopygia
guttata]
Length = 1263
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 258/599 (43%), Positives = 356/599 (59%), Gaps = 41/599 (6%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAKQQRDTVKRTPKKQLEPVFEALDTLGNT 517
MPML PPV WT GA + +MR + +++ P L V +AL+ LGN
Sbjct: 679 MPMLCPPVPWTSPTFGAFVLNDTKLMRFMDETTYHQQLLEQCPLVNLHAVLDALNQLGNC 738
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP-------EKPETEDEAQLRKWQWKVR 570
W++N VL ++ I++ G ++ D+P P P + + + ++ +V
Sbjct: 739 AWKINQPVLDIIISIFNDKGN-----EKLDIPPPLSEAPKPPTPPSNSSSWSKSFKHEVF 793
Query: 571 NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
KK+ E HS R D KLS+A ++D+ F++PHN+DFRGR YP PY NHLG+D+ R
Sbjct: 794 LCKKKAAEMHSLRMDALYKLSIANYVRDK-VFWFPHNMDFRGRTYPCPPYFNHLGNDVTR 852
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
IL FAEGR LG GL WLKIHL NL G K + + RL + ++DI DSAD+PL G
Sbjct: 853 AILLFAEGRPLGPRGLDWLKIHLINL-TGLKKKNALQERLEYANEIMEDILDSADRPLTG 911
Query: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
R+WW+ ++P+Q LA C+ + +A RS P +ISH PVHQDGSCNGLQHYAALGRD GA
Sbjct: 912 RKWWMDTDEPWQALACCMEIAKASRSPDPAAYISHFPVHQDGSCNGLQHYAALGRDLSGA 971
Query: 751 AAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
A+VNLV P DVYS +A +V ++DA+R V A++L + RK+VKQTVM
Sbjct: 972 ASVNLVPCGLPQDVYSAVAQQVEEFRKKDAERGLKV------AQVLQGFISRKVVKQTVM 1025
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
T VYGVT G R QI++RLKE EE L+ AS Y K ++ EMF A R I +WL
Sbjct: 1026 TVVYGVTRYGGRLQIEKRLKEIDEFPEEY-LWEASHYLVKQVFNSIKEMFSATRDIQNWL 1084
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQR 928
E AK+IA + V W TPLGLP+VQPY + + +Q L+++ ++K +Q+
Sbjct: 1085 TESAKLIAQSGRTVEWVTPLGLPIVQPYYRSRSTVLNCGMQRLSVKTSNSSQKPDTVKQK 1144
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
AFPPNF+HSLD +HMM+TA+ C + GLTF VHD YWTHA VD MN++ R++FV L+
Sbjct: 1145 NAFPPNFIHSLDSTHMMLTALHCLRKGLTFVSVHDCYWTHALTVDVMNQVCRQQFVALHS 1204
Query: 989 MPIFENL----LDSFQKSFPKLVFP-------------PLPERGDFDLREVLGSPYFFN 1030
I ++L L+ + S P +P G+F+L++V+ S YFF+
Sbjct: 1205 EKILQDLSEFMLEKYCSSSSSSTEPIAQWQKRLMEQLSSVPRTGEFNLKQVMDSTYFFS 1263
>gi|330914797|ref|XP_003296788.1| hypothetical protein PTT_06972 [Pyrenophora teres f. teres 0-1]
gi|311330907|gb|EFQ95107.1| hypothetical protein PTT_06972 [Pyrenophora teres f. teres 0-1]
Length = 1430
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 297/900 (33%), Positives = 450/900 (50%), Gaps = 119/900 (13%)
Query: 195 RQVKIETEAWEKAANEYR---ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
RQ+++E + + A ++ E L D+ + P ++++ W++ L A K E
Sbjct: 368 RQLQMEQDGMDAAVKRWKQENEKLQDLGVHGVMNTKP-IQAMMYSWYKALVPAFKKRIEH 426
Query: 252 CR---------MAKHKV-AYAPYFDQLPADMMAVITMHKL-MGLLMTGGEHGRA-RVVQA 299
+ M K +V +Y + ++ + +A IT+ + + GE A +V
Sbjct: 427 AKKVLSESAKDMMKEEVNSYGVWLERCKPEKLAAITVARTTQAAVRNKGEDNSALKVSSL 486
Query: 300 ACIIGDAI------EQEVRIHKFLEKTKKKNETK--NKEDEEGDESNTVTTEQEKLRKKV 351
+ IG I E + R FL+K +K+ +K + S T + ++E +
Sbjct: 487 STSIGGEIQDYLDSESQARRDAFLKKQRKQTRLDLFSKLSKNPSVSQTESGQRESIAS-- 544
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAP 409
D +K +P AR K+G+ +E L A + A + +
Sbjct: 545 LDSFEKTTIPL----------------QARTKLGAMCLENLLSCATLTVTAKDPRTGEEK 588
Query: 410 PDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY-MPMLVPPVKW 468
AF H + KK G I + VL L + H + +PM++ P W
Sbjct: 589 SRSMAAFHHQVGFHQ------GKKLGFIVPHHEVLAKLRTESVHSIHNVRLPMVIEPKPW 642
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTP--KKQLEPVFEALDTLGNTKWRVNNRVL 526
+ ++ G ++ +P V+R G + ++ + V LD LG W++N V
Sbjct: 643 SSFEDGGYYTIPQKVVRQKGGDSSQRAYAQSAIENGDMSKVMAGLDVLGRVPWQINAPVF 702
Query: 527 SVLDRIWSCGGRLADLVDRNDVPL---PEKPETEDEAQLR-KWQWKVRNVKKENRERHSQ 582
V+ R W+ G L L+ V P++P + Q R KW ++ HSQ
Sbjct: 703 DVMARAWNAGESLGSLIGEKAVAALERPKEPPADATYQERAKWGKALKEYDNHIGGLHSQ 762
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
RC +L AR +E+ Y+PH+VDFRGRAYP+ P LNH+GSD+ RG+L+FA G+ LG
Sbjct: 763 RCFQNFQLETARAFLNEKKIYFPHSVDFRGRAYPIPPILNHIGSDVARGLLKFAHGKELG 822
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
GL WLKIHLANLY G DK S R F ++LD+I DSA PL+GRRWW KAEDP+Q
Sbjct: 823 TVGLQWLKIHLANLY--GFDKASLREREQFAMDNLDEIRDSASNPLDGRRWWAKAEDPWQ 880
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
CLA CI L AL S P F+S +PVHQDG+CNGLQHYAALG D GA VNL ++P
Sbjct: 881 CLACCIELKSALDSPDPTRFLSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQ 940
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
D+Y+G+A V ++ +DA + + AK + + RK+VK+TVMT+VYGVT++GA+
Sbjct: 941 DIYTGVAELVKEMVSKDAAKGSEL------AKFVDGHISRKVVKRTVMTNVYGVTFMGAK 994
Query: 823 DQIKRRLKE---RGAPMEEAELFGA-SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
+Q+ L+ + P E+ + G+ + Y A ALG++F A+ I WLGEC + I
Sbjct: 995 EQVHDELRNIFPKFEPTEKVKSLGSVALYIAYAIFEALGKIFNGAQEIQYWLGECGERIT 1054
Query: 879 ---SENQPVR---------------------------------------------WTTPL 890
+E Q R WTTPL
Sbjct: 1055 TSLTEEQIQRIHDRYEGIDPAKEVYDSKFTPPKKLTASQLTKFNKSMENFTTGIIWTTPL 1114
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTA 948
+P+VQPYRK ++T +Q +T+ +++ K V ++Q AFPPNF+HSLD SHM+++A
Sbjct: 1115 RMPIVQPYRKDSVQKIRTKIQDITVSKKSAKDEVDKRKQLQAFPPNFIHSLDASHMLLSA 1174
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+ + GL FA VHDS+WTHA D+ +N ILR+ FV ++ + + L F + ++
Sbjct: 1175 LKASEMGLDFAAVHDSFWTHASDIPNLNVILRDAFVRMHSEDVVDRLAAEFTARYKGALY 1234
>gi|389643156|ref|XP_003719210.1| DNA-directed RNA polymerase [Magnaporthe oryzae 70-15]
gi|351638979|gb|EHA46843.1| DNA-directed RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1422
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 285/821 (34%), Positives = 421/821 (51%), Gaps = 99/821 (12%)
Query: 253 RMAKHKVAYAPYFDQLPADMMAVITMHKLMG-LLMTGGEHGRARVVQAACIIGDAIEQEV 311
+M ++ P+ Q A +A +T+ +M L M G + G A + A E
Sbjct: 419 KMEAERMLTRPFMRQSTASRLAALTILSVMSSLAMHGVDKGITITQTIATVARSAEEDAA 478
Query: 312 RIHKFLEKTKKKNETKN---KEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK 368
+ + + ++K KN + G E N T+ +VTD+ Q A R
Sbjct: 479 AFQRSVRQKREKLMRKNGFARAKAAGAEPNAPGTDSTL---RVTDIYDIQTDSAER---- 531
Query: 369 GQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKE 426
W R +GS ++ L A I + + + PAF ++ +
Sbjct: 532 -------WPASIRLTIGSVLLSSLVDVATITVTKEHPETRETISAEQPAFARSI-----Q 579
Query: 427 TKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
K G KKYG + N +++ + R R + ++PM+ P WT +DKG + P++++R
Sbjct: 580 YKQG-KKYGTLAPNKSLVQLMMREPRKEFLARHLPMVCKPDPWTKFDKGGYLDQPTHLVR 638
Query: 486 T-HGAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV 543
G K Q+ + + +E V + LD LG W +N VL V+ ++W+ G + +
Sbjct: 639 IKRGEKDQKLYAEAAMARGDMEQVAKGLDALGRVGWNINKSVLDVVLQVWNSGEGIGGIP 698
Query: 544 DRN-DVPLPEKPETEDEAQLR-KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG 601
+ D+ PE+P ++ +R +W +++ V+ HSQRC +L +A +D+
Sbjct: 699 PLSVDIKAPEEPSPSEDPMVRFRWIRELKKVENIKASYHSQRCHTNFQLEIAHAYRDQT- 757
Query: 602 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGV 661
Y+PHNVDFRGRAYP+ YLNH+G+DL R +L F + + LG+ GL WLK+HLAN+Y G
Sbjct: 758 LYFPHNVDFRGRAYPLPIYLNHIGADLSRALLLFDKAKPLGEDGLQWLKVHLANVY--GF 815
Query: 662 DKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
DK S R F +H++DI DSA PL G+RWWL AEDP+QCLA C L A P
Sbjct: 816 DKASLSERAQFALDHIEDIVDSATNPLSGKRWWLGAEDPWQCLATCKELKAAFDMPDPAQ 875
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
+ +PVHQDG+CNGLQHYAALG D+ GA VNL ++PADVY+ +A V I+ D
Sbjct: 876 YECRLPVHQDGTCNGLQHYAALGGDSWGARQVNLEPGDRPADVYTAVANLVSESIEEDIA 935
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL 841
+ + A L ++ RK+VKQTVMT+VYGVT++GA+ Q+K++L +++
Sbjct: 936 KGVKM------AAALKGKIKRKVVKQTVMTNVYGVTFVGAKSQVKKQLDAFYPDIKKETG 989
Query: 842 FGAS---CYAAKVTLTALGEMFQAARGIMSWLGECA------------------------ 874
F AS Y A A+ MF+ A I WLGE
Sbjct: 990 FDASHLAVYIAAKIFKAMSTMFRGAHDIQYWLGEIGSRVCRAVTPDQMVRLSEEMMRPQK 1049
Query: 875 ------------------KIIASENQP------------VRWTTPLGLPVVQPYRKLGRH 904
+++AS N+ + WTTPL +PVVQPYRK
Sbjct: 1050 QKEKALKTLATTGNPEYDQVLASYNKASLGDLLSQFRSTIIWTTPLRMPVVQPYRKAAVK 1109
Query: 905 TVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
+KT+ Q IL + + V ++Q AFPPNFVHSLD SHMM++A+ C GLTFA VH
Sbjct: 1110 IIKTNFQDLILRVSDPWDPVHKQKQLQAFPPNFVHSLDASHMMLSALECDSNGLTFAAVH 1169
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
DS+WTHACDV +M+ ILR+ F+ ++E + L D F+ +
Sbjct: 1170 DSFWTHACDVQKMSNILRDAFIRIHEEDVIGRLADEFKARY 1210
>gi|403309070|ref|XP_003944953.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 1233
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 271/695 (38%), Positives = 390/695 (56%), Gaps = 62/695 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD--IFPAFTH--ALRTVSKETKG 429
+PW + ++GS + E+L Q + P+D L D + P H + R V +
Sbjct: 563 QPWPLPVQVELGSLLAEILVQAPKM--PSD-LTKPRGDSRLVPVLYHVYSFRNVYQ---- 615
Query: 430 GSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMR 485
G ++ +P ++ L TA + + +PML PP+ WT GA P+ +MR
Sbjct: 616 ----IGFLKPHPAYVELLA-TAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMR 670
Query: 486 -THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG------- 537
G + ++R P L + L LGN WRVN RVL ++ ++ G
Sbjct: 671 AVDGTMHHQRLLERCPPAALHGALDTLTQLGNCAWRVNGRVLDLVLELFQEEGCPKLGVP 730
Query: 538 -RLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
R +++ ++ LP D+A+LR+ ++ KE RE HS R + +LS+A+ +
Sbjct: 731 ARPSEVAAPHEAALPSSTGLADKAELRR---ELARCLKEAREMHSLRTEALYRLSLAQHL 787
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
++ F+ PHN+DFRGR YP P+ NHLG+DL R +LEFA+GR LG GL WLKIH+ NL
Sbjct: 788 RNRI-FWLPHNMDFRGRTYPCPPHFNHLGNDLARALLEFAQGRPLGPHGLDWLKIHVVNL 846
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
G + + R AF E + DI DSAD P+ GR+WW+ +E+P+Q LA C+ + +A+R+
Sbjct: 847 -TGLKKREPLQARRAFAEEVMGDILDSADHPMTGRKWWMDSEEPWQTLACCMEIAKAVRT 905
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
S P ++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL E P DVYS +AA+V
Sbjct: 906 SDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPAEVPQDVYSDVAAQVEFFR 965
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM 836
DA+R V A++L V RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 966 SLDARRGVRV------AQVLEGFVTRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFP 1019
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
+E L+ AS Y + +L EMF +R I WL E A++I+ V W TPLG+P++Q
Sbjct: 1020 QEF-LWEASQYLVRQVFRSLQEMFSGSRAIQHWLTESARLISHMGSAVEWVTPLGIPIIQ 1078
Query: 897 PYRK-LGRHTVKTSLQILTLQRETE---KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
PY + + ++ LQ ++ + K ++QR FPPNF+HSLD +HMM+TA+ C
Sbjct: 1079 PYHQAIKIKQGRSGLQSVSYSVNADSGLKPNKRKQRNGFPPNFIHSLDSTHMMLTALHCY 1138
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP--- 1009
+ GL F VHD +WTHA DV MN++ RE+FV L+ PI ++L F P
Sbjct: 1139 REGLIFVSVHDCFWTHAADVPIMNQVCREQFVRLHSQPILQDLSSFLISRFCCSSRPQKL 1198
Query: 1010 --------------PLPERGDFDLREVLGSPYFFN 1030
+P+ G FDL V S +FF+
Sbjct: 1199 SQHLEDSKLRETLLAVPKPGSFDLERVKLSTFFFS 1233
>gi|440472069|gb|ELQ40956.1| DNA-directed RNA polymerase [Magnaporthe oryzae Y34]
gi|440485237|gb|ELQ65213.1| DNA-directed RNA polymerase [Magnaporthe oryzae P131]
Length = 2046
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 285/821 (34%), Positives = 419/821 (51%), Gaps = 99/821 (12%)
Query: 253 RMAKHKVAYAPYFDQLPADMMAVITMHKLMG-LLMTGGEHGRARVVQAACIIGDAIEQEV 311
+M ++ P+ Q A +A +T+ +M L M G + G A + A E
Sbjct: 419 KMEAERMLTRPFMRQSTASRLAALTILSVMSSLAMHGVDKGITITQTIATVARSAEEDAA 478
Query: 312 RIHKFLEKTKKKNETKN---KEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK 368
+ + + ++K KN + G E N T+ +VTD+ Q A R
Sbjct: 479 AFQRSVRQKREKLMRKNGFARAKAAGAEPNAPGTDSTL---RVTDIYDIQTDSAER---- 531
Query: 369 GQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKE 426
W R +GS ++ L A I + + + PAF ++ +
Sbjct: 532 -------WPASIRLTIGSVLLSSLVDVATITVTKEHPETRETISAEQPAFARSI-----Q 579
Query: 427 TKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485
K G KKYG + N +++ + R R + ++PM+ P WT +DKG + P++++R
Sbjct: 580 YKQG-KKYGTLAPNKSLVQLMMREPRKEFLARHLPMVCKPDPWTKFDKGGYLDQPTHLVR 638
Query: 486 T-HGAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV 543
G K Q+ + + +E V + LD LG W +N VL V+ ++W+ G + +
Sbjct: 639 IKRGEKDQKLYAEAAMARGDMEQVAKGLDALGRVGWNINKSVLDVVLQVWNSGEGIGGIP 698
Query: 544 DRN-DVPLPEKPETEDEAQLR-KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG 601
+ D+ PE+P ++ +R +W +++ V+ HSQRC +L +A +D+
Sbjct: 699 PLSVDIKAPEEPSPSEDPMVRFRWIRELKKVENIKASYHSQRCHTNFQLEIAHAYRDQT- 757
Query: 602 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGV 661
Y+PHNVDFRGRAYP+ YLNH+G+DL R +L F + + LG+ GL WLK+HLAN+Y G
Sbjct: 758 LYFPHNVDFRGRAYPLPIYLNHIGADLSRALLLFDKAKPLGEDGLQWLKVHLANVY--GF 815
Query: 662 DKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
DK S R F +H++DI DSA PL G+RWWL AEDP+QCLA C L A P
Sbjct: 816 DKASLSERAQFALDHIEDIVDSATNPLSGKRWWLGAEDPWQCLATCKELKAAFDMPDPAQ 875
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
+ +PVHQDG+CNGLQHYAALG D+ GA VNL ++PADVY+ +A V I+ D
Sbjct: 876 YECRLPVHQDGTCNGLQHYAALGGDSWGARQVNLEPGDRPADVYTAVANLVSESIEEDIA 935
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL 841
+ + A L ++ RK+VKQTVMT+VYGVT++GA+ Q+K++L +++
Sbjct: 936 KGVKM------AAALKGKIKRKVVKQTVMTNVYGVTFVGAKSQVKKQLDAFYPDIKKETG 989
Query: 842 FGAS---CYAAKVTLTALGEMFQAARGIMSWLGECA------------------------ 874
F AS Y A A+ MF+ A I WLGE
Sbjct: 990 FDASHLAVYIAAKIFKAMSTMFRGAHDIQYWLGEIGSRVCRAVTPDQMVRLSEEMMRPQK 1049
Query: 875 ------KIIASENQP------------------------VRWTTPLGLPVVQPYRKLGRH 904
K +A+ P + WTTPL +PVVQPYRK
Sbjct: 1050 QKEKALKTLATTGNPEYDQVLASYNKASLGDLLSQFRSTIIWTTPLRMPVVQPYRKAAVK 1109
Query: 905 TVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
+KT+ Q IL + + V ++Q AFPPNFVHSLD SHMM++A+ C GLTFA VH
Sbjct: 1110 IIKTNFQDLILRVSDPWDPVHKQKQLQAFPPNFVHSLDASHMMLSALECDSNGLTFAAVH 1169
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
DS+WTHACDV +M+ ILR+ F+ ++E + L D F+ +
Sbjct: 1170 DSFWTHACDVQKMSNILRDAFIRIHEEDVIGRLADEFKARY 1210
>gi|167524739|ref|XP_001746705.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774975|gb|EDQ88601.1| predicted protein [Monosiga brevicollis MX1]
Length = 1253
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 280/712 (39%), Positives = 385/712 (54%), Gaps = 101/712 (14%)
Query: 371 DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGG 430
D PW G+ ++E++ QT S L + AF H ++ G
Sbjct: 164 DLLSPWPIPVLLACGTSLLEVVLQT----SSTGHLPNHDKKPVAAFYHMMQL------DG 213
Query: 431 SKKYGVIECNPLVLKGLERTA--RHMVIPY--------MPMLVPPVKWTGYDKGAHFFLP 480
K+ G I C+ LVL + A R +P +PM +PP WT KGA+ P
Sbjct: 214 VKRVGYIRCHKLVLDRVSGQASDRGSCVPSKVAIDASQLPMTIPPRPWTSVRKGAYLICP 273
Query: 481 SYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLA 540
S +MRT Q + L VF A+ L T W+VN +VL V+ ++
Sbjct: 274 SAIMRTGDWAFQHFALLSEATHNLARVFNAISALSATAWKVNGQVLRVVTELFHSEDGYD 333
Query: 541 DL----------VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
DL VD+ D P+ +T KK + E HS R D+ L+L
Sbjct: 334 DLGIAPFRVNYEVDKTD---PKSLKTH---------------KKLSNEAHSLRSDLHLRL 375
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
VA + E+ F+ PHN+DFRGRAY M PYL H+G+D+ RG+L FAE + LG G WLK
Sbjct: 376 MVAHWL-GEKQFWLPHNLDFRGRAYSMPPYLTHIGNDMARGLLTFAETKPLGADGWRWLK 434
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG------RRWWLKAEDPFQCL 704
+HLAN+Y G DKL + R F E++++++ SAD+PL G + WWLK E+P+Q L
Sbjct: 435 VHLANVY--GKDKLPMDERAKFAEDNMENVLSSADRPLAGLLEPGEKSWWLKGENPWQVL 492
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR---EKP 761
A C+ L A RS +PE + S PVHQDG+CNGLQHYAA+G D GA VN++ ++P
Sbjct: 493 ATCMELAAAYRSGNPEAYESGFPVHQDGTCNGLQHYAAMGGDIAGARHVNVIPTPEDDRP 552
Query: 762 ADVYSGIAARVLVIIQRDAQ-----------RDPAVFPDALRAKLLLSQ--VDRKLVKQT 808
DVYS +AA+V ++ A +DP + A+LL+ Q + RK+VKQT
Sbjct: 553 QDVYSAVAAKVDELLHMQATTGNFEHFPREVKDPERYKQL--ARLLMEQGPMKRKIVKQT 610
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
VMT+VYGVTYIG RDQI R+LK + +A + + Y LT L +F A+ I
Sbjct: 611 VMTNVYGVTYIGGRDQILRQLKAHDY-VPDALMKDCASY-----LTLL--IFVNAQKIQK 662
Query: 869 WLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM---VK 925
WL A++IAS +PV W TPLGLP++QPY + + TSLQ + T + V
Sbjct: 663 WLSRQARMIASSGEPVSWVTPLGLPIIQPYHMAAKRQITTSLQSVMTTVTTSPIKPPNVV 722
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
+Q +AFPPNFVHSLD +HM+ TA AC K GLTFA +HDSYWTHA VD MN R++F+
Sbjct: 723 KQSSAFPPNFVHSLDSTHMLQTAAACTKDGLTFAAIHDSYWTHAASVDVMNLHTRQQFLL 782
Query: 986 LYEMPIFENLL-------------DSFQKSFPK--LVFPPLPERGDFDLREV 1022
L+E P+ +NLL + +QK + + +VF P P +GD DL +
Sbjct: 783 LHEAPLLDNLLRFFRAQHEGRPLREQYQKRYGQTNVVFEPCPSKGDLDLHRM 834
>gi|395513402|ref|XP_003775309.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Sarcophilus harrisii]
Length = 925
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/695 (39%), Positives = 387/695 (55%), Gaps = 76/695 (10%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLAD-APPDIFPAFTHALRTVSKETKGGSK 432
K W ++G++++E++ Q+ I P + + A + P H +S K
Sbjct: 269 KVWPDVVLVQLGTQLVEIMVQS--IHMPTNLFSSQAEKKLIPVLYHVYSFLS------VK 320
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HG 488
+ G I+ +P + + A + MPML PP+ W GA+ P+ +MR G
Sbjct: 321 QIGFIKPHPSFSQLVADAACTKLTFDSSVMPMLCPPMPWISPHFGAYILHPTKLMRCLDG 380
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV 548
Q + ++ PK+ L V +AL+ LG+ W+VN VL ++ I++ G + DV
Sbjct: 381 TVQHQQLLESCPKQNLHAVLDALNQLGSCAWKVNQPVLDLIISIFNSKGS-----KKLDV 435
Query: 549 PLP--EKP-----------ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARK 595
P P E P + ++A+LR+ ++ K RE +S R D KLS+A
Sbjct: 436 PPPLSEAPVPPSYQLSKDASSSEKAKLRR---EIAQCHKTAREMYSLRTDALYKLSIAHH 492
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
++D+ F++PHN+DFRGR YP P+ NHLGSD+ R IL FAEG+ LG +GL WLKIHL N
Sbjct: 493 LRDQ-IFWFPHNMDFRGRTYPCPPHFNHLGSDMTRAILLFAEGKPLGPNGLDWLKIHLIN 551
Query: 656 LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR 715
L G K S + RLA+ L+DI DSAD PL GR+WW+ ++P+Q LA C+ + A+R
Sbjct: 552 L-TGLKKKESLQARLAYANEILEDILDSADNPLTGRKWWMDVDEPWQALACCMEIARAVR 610
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
S PE +ISH P+HQDGSCNGLQHYAALGRD +GA +VNL+ + P DVYS +A V +
Sbjct: 611 SPDPEAYISHFPIHQDGSCNGLQHYAALGRDVIGATSVNLMPCDVPQDVYSVVAQMVEEL 670
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
+RDA ++ A++L + RKLVKQTVMT VYGVTY G R QI++RLKE
Sbjct: 671 RKRDAAAGRSI------AQVLEGFISRKLVKQTVMTVVYGVTYYGGRLQIEKRLKELDMF 724
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
+E+ ++ AS Y +++ ++L EMF R I WL + A I+ V+W TPLGLP++
Sbjct: 725 PKES-VWEASFYISQLVFSSLSEMFSGTREIQDWLTKSAHFISKSGSTVQWVTPLGLPII 783
Query: 896 QPYRKLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
QPY K + + SLQ L L ++K +Q+ AFPPNF+HSLD +HMM+TA+ C
Sbjct: 784 QPYHKSQKIVIPGSLQSLCLMSCSDVSQKPNTLKQKNAFPPNFIHSLDSTHMMLTALHCH 843
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLL--------------DS 998
K A + + +I RE+FV L+ PI L DS
Sbjct: 844 KX------------VGAAPLPALRKICREQFVNLHSQPILNELSKYLVQKYCSGFLSRDS 891
Query: 999 FQKSFPKLVFPPL---PERGDFDLREVLGSPYFFN 1030
S KL+ L PERGDFDL+ V S YFF+
Sbjct: 892 LSSS-EKLMLKTLSHVPERGDFDLQNVKQSTYFFS 925
>gi|121483706|gb|ABM54185.1| mitochondrial RNA polymerase [Paracentrotus lividus]
Length = 1421
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 254/640 (39%), Positives = 374/640 (58%), Gaps = 61/640 (9%)
Query: 432 KKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRTH 487
K G I+ +P L L +TA+ + + +PM+ PP+ WT GA+ + +MR+
Sbjct: 802 KHVGFIKPHP-TLVDLFQTAKDPNLEFDTNMLPMMTPPIPWTSVKFGAYPLSSTKIMRSK 860
Query: 488 -GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL-SVLDRIWSCGGRLADLVD- 544
GA Q ++ +++TP ++L P+ +AL+ L + W +NN +L +V+ + G + D+
Sbjct: 861 DGANQHQEVLEKTPSQELYPILDALNQLSSVPWIINNPILDTVISVFRNNGSKELDVAQP 920
Query: 545 RNDVPLPEKPET----EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P P + + E+ AQ+ + + R ++ E HS R D+ KLS+A K++++
Sbjct: 921 ASACPYPPRITSDVSREELAQIHRERAAARKMQAE---MHSLRMDMLYKLSIADKVRND- 976
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F++PHN+DFRGR YP P+ NH G+D+ R +L FA GR LG+ G WLKIHL NL G
Sbjct: 977 VFWFPHNMDFRGRVYPCPPHFNHFGNDVTRSLLLFARGRPLGEEGFRWLKIHLVNL-TGH 1035
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S RL + + + +I DSAD PL+G +WW A++ +Q LA CI +T+A+RS P
Sbjct: 1036 KKRCSVAERLQYAHDMMPEIMDSADNPLDGNKWWQGADEQWQTLAACIEVTKAIRSGDPT 1095
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
T+ISH+P+HQDGSCNGLQHYAALGRD +GA VNL + P DVYSG+A V + ++DA
Sbjct: 1096 TYISHLPIHQDGSCNGLQHYAALGRDLIGAEQVNLHPFDVPQDVYSGVAQMVEDLRKQDA 1155
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
++ + A L + R +VKQTVMT VYGVT G R QI ++L+E + +
Sbjct: 1156 EKGNKI------AIALDGLIKRNVVKQTVMTVVYGVTSYGGRRQILKQLREEDDLSMDQK 1209
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
F A KV +L +MF R I WL ECA +I+ + V W TPLGLP++QPY
Sbjct: 1210 WFAAGYITLKV-FQSLRKMFTKTREIQDWLTECAWLISKAGETVEWVTPLGLPIIQPYH- 1267
Query: 901 LGRHTVKTSLQILT----------LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
K SL+++T +TE+ +Q+ AFPPNF+HSLD +HMM+T++
Sbjct: 1268 ------KKSLKLITHGGRNVYHEERHCQTERPDTLKQKNAFPPNFIHSLDSTHMMLTSLY 1321
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL---- 1006
++AG+TFA VHD YWTHA V+EMN I R +FV+L++ PI + L + + +L
Sbjct: 1322 SQRAGITFASVHDCYWTHASSVNEMNEICRNQFVKLHKEPILDLLAEFMVDKYGQLDMQD 1381
Query: 1007 ----------------VFPPLPERGDFDLREVLGSPYFFN 1030
+PE+GDFDL VL S YFF+
Sbjct: 1382 ASKLKRGSRNMKILEDYIKNVPEKGDFDLDNVLKSTYFFS 1421
>gi|408395694|gb|EKJ74870.1| hypothetical protein FPSE_04906 [Fusarium pseudograminearum CS3096]
Length = 1353
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 291/819 (35%), Positives = 425/819 (51%), Gaps = 107/819 (13%)
Query: 250 ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG--RARVVQ-----AACI 302
ERC Y P +A +T ++ LL T G + V+Q + +
Sbjct: 405 ERC-------IYGPILRLGDPTRLAAVT---ILTLLNTSAIQGVDKGVVIQRLLNDVSRV 454
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
D I +++ + LEK +++ K GD + T TE+ K +TD A
Sbjct: 455 AQDDIRTQIQENAELEKRRRR-----KVKFTGDNAETQATEE----KTITD--------A 497
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ--LADAPPDIFPAFTHAL 420
++ W RA+VGS +I+ L +TA ++ + + + PAF+H
Sbjct: 498 DEPVLSKNPAMGLWSVQVRARVGSILIKSLIETAKVKVVREHPISKERISQVQPAFSH-- 555
Query: 421 RTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFL 479
+ KG KK G++ N +++ L+R + ++PM+ P W ++G
Sbjct: 556 --MHAPRKG--KKVGMLFINADLVERLKREPMGDFLAKHLPMVSEPQPWRRINEGGFLSS 611
Query: 480 PSYVMRTH-GAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
+ ++R G +QR K K+ ++ VF+ LD LG T WR+NN VL V+ W+ G
Sbjct: 612 KATLVRLKTGDVEQRLYTKAAIKRGDMDQVFKGLDVLGKTPWRINNNVLDVMVEAWNSGD 671
Query: 538 RLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+A++ ++ P +P D R W V+ V+ E HSQRC + L+L +AR
Sbjct: 672 AIANMPTLTPNLVTPAEPTGSDPLLRRAWYRNVKAVENERAALHSQRCYMNLQLEIARAF 731
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+ ++ Y+PHN+D+RGRAYP+ YLNH+G+D R +L FA G+ LG+ GL WLKIHLANL
Sbjct: 732 R-KQVIYFPHNMDYRGRAYPLPTYLNHMGADHTRALLRFANGKELGEKGLRWLKIHLANL 790
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
Y G DK S R AF +L +I +S PL G RWWLKAEDP+QCLA C L A
Sbjct: 791 Y--GYDKASFSEREAFATENLPNIVESVANPLGGSRWWLKAEDPWQCLAACFELKAAHDL 848
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P ++S +PVHQDG+CNGLQHYAALG DT GA VNL+ ++PADVY +A V I
Sbjct: 849 EDPTKYVSSLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGDRPADVYMAVANLVKESI 908
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL------- 829
++A++ + + + ++ RK+VKQTVMT+VYGVT+ GA+ Q+ ++L
Sbjct: 909 AKEAEKGNQL------GQNCMGKITRKVVKQTVMTNVYGVTFSGAKQQVCKQLDALYPEM 962
Query: 830 -KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKIIASE--- 880
KE G P + Y AK ALG MF+ A I WLGE C + +++
Sbjct: 963 YKETGIPN-----LVTATYIAKHIFAALGTMFRGAHDIQYWLGEIGARACRALTSAQIEQ 1017
Query: 881 -----------------------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
+ WTTPL +PVVQPYRK ++T LQ
Sbjct: 1018 LAEEKDTPAAGATAAATKRMELEELTSQFRSTIVWTTPLRMPVVQPYRKSTTREIRTCLQ 1077
Query: 912 ILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
+T Q TE V ++Q FPPNF+HSLD SHM+++A+ C GL FA VHDS+WTHA
Sbjct: 1078 AITYPTQGRTEPVDRRKQLQGFPPNFIHSLDASHMLLSALKCDDLGLNFAAVHDSFWTHA 1137
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
DVD +N +LRE F+ ++E + L F+ + ++
Sbjct: 1138 ADVDILNGVLREAFIRIHEEDVVGRLAVEFEARYKGSIY 1176
>gi|403169890|ref|XP_003329308.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168465|gb|EFP84889.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1409
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 297/819 (36%), Positives = 424/819 (51%), Gaps = 128/819 (15%)
Query: 294 ARVVQAACIIGDAIEQE------VRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL 347
A+ + +G AIE E I + +K +T N+E+ + S +V K+
Sbjct: 516 AKSIGLFIALGKAIENEWYAQTIKAIPELNQKLLAAIKTLNQENLDATASRSVDHTVRKI 575
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI-QSPADQLA 406
K ++L Q A + + G D+F W R+KVG+ V+ L +T+ I +S +
Sbjct: 576 WK--SELKNYQ---ADLQAIHG-DNFD-WTIQQRSKVGALVMRGLLETSKITRSTVLEDG 628
Query: 407 DAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMPMLVP 464
++ PAF + K+ GV + N V + L+ ++ + Y+PM+
Sbjct: 629 SVYEEVQPAFYQTTQYFD------GKRVGVTKMNEAVAERLDLDPANVSLHPRYLPMVCR 682
Query: 465 PVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK-KQLEPVFEALDTLGNTKWRVNN 523
P+ WT GA+ + +MRT + +Q + + LE V++ALD LGNT W +N
Sbjct: 683 PMPWTHPKNGAYLVHGAPLMRTRDSPEQALHLLEAHRFHGLENVYKALDKLGNTPWNINR 742
Query: 524 RVLSVLDRIWSCGGRLADLVDRND----------------VPLPEKPETEDE-------- 559
V + +W+ G +LA + R+ P P ++DE
Sbjct: 743 PVFDTMSTVWNQGIQLAGIPIRDPHLNLKPDQIEKLFFSPPPSSTTPASDDEHHDQLENQ 802
Query: 560 ----AQLRKWQWK------VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
+QL + + R++ R + QRC + +L +AR +E FY+PHN+D
Sbjct: 803 SSSSSQLENPRSEGEKKEIYRSLLASRRSAYGQRCSVNYQLEIARAYLNET-FYFPHNID 861
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669
FRGRAYP+ LNH+G D+ RG+L+FAE + LG+ GL WLKIHL+N Y G DK S + R
Sbjct: 862 FRGRAYPIPANLNHIGDDISRGLLKFAEEKELGEDGLRWLKIHLSNKY--GNDKASLDDR 919
Query: 670 LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
F E L+ +FDSAD+PLEG+RWWL++EDP+Q LA C+ LT ALRS P + S +PVH
Sbjct: 920 AKFIEERLELVFDSADRPLEGKRWWLESEDPWQTLAGCMELTAALRSPDPTAYRSSLPVH 979
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPD 789
QDGSCNGLQHYAALG D G VNLV EKP DVYS +A V ++ DA +
Sbjct: 980 QDGSCNGLQHYAALGGDIDGGKEVNLVPGEKPGDVYSKVAVEVAKLVDFDAANGHDI--- 1036
Query: 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAA 849
AK L + RK+VKQTVMT+VYGVT++GAR+QIKR+LK+ G + L+ ++ Y A
Sbjct: 1037 ---AKALKGHIKRKVVKQTVMTTVYGVTFVGAREQIKRQLKDLGV-IPIPNLYISAAYVA 1092
Query: 850 KVTLTALGEMFQAARGIMSWL-------------------------------GECAKIIA 878
+ L ++GE+F+ A I WL GE A+ +A
Sbjct: 1093 TLVLRSIGEVFKGAVAIQKWLTIVARLVSKSIPPERVESLTTSPSTAKKQKEGEGAEGVA 1152
Query: 879 SENQP--------------------------VRWTTPLGLPVVQPYRKLGRHTVKTSLQI 912
+P + WTTPLGL V QPYR R +KT LQ
Sbjct: 1153 KTKKPRPVKRKLPGSSSAAHDPDVEVELMTSMTWTTPLGLVVCQPYRAQNRTQIKTVLQT 1212
Query: 913 LTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHAC 970
+ + E + Q +AFPPNF+HSLD +HMM+TA+AC+ +TFA VHDSYWTHA
Sbjct: 1213 VYIADPFEPAQADSRSQASAFPPNFIHSLDATHMMLTALACQD--ITFASVHDSYWTHAS 1270
Query: 971 DVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
VD MN LRE FV L+ I +NL+ + + + P
Sbjct: 1271 SVDHMNSKLRESFVRLHTTRILDNLVQEIKHRYEGYMVP 1309
>gi|390478301|ref|XP_003735468.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Callithrix jacchus]
Length = 1294
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 269/694 (38%), Positives = 384/694 (55%), Gaps = 60/694 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + S + ++ + P H + R V +
Sbjct: 624 QPWPLPVQVELGRLLAEILVQATKMPSNLAKPRNSS-RLVPLLYHVYSFRNVYQ------ 676
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-TH 487
G ++ +P ++ L A V +PML PP+ WT GA P+ +MR
Sbjct: 677 --IGFLKPHPAYVQLLATAAEPTVTFEAVDVPMLCPPLPWTSPHTGAFLLNPTKLMRAVD 734
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW--------SCGGRL 539
G + ++ P L + L LGN WRVN RVL ++ ++ S
Sbjct: 735 GTMHHQRLLENCPPAALHGALDTLTQLGNCAWRVNGRVLDLVLELFQDKGCPKLSVPAPP 794
Query: 540 ADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
+++ ++ PLP D+A+LR+ ++ KE+RE HS R D +LS+A +++
Sbjct: 795 SEVAAPHEAPLPSSTGLVDKAELRR---ELARSLKESREMHSLRADALYRLSLADHLRNC 851
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLG+DL R +LEFA+G LG GL WLKIH+ NL G
Sbjct: 852 V-FWLPHNMDFRGRTYPCPPHFNHLGNDLARALLEFAQGCPLGPHGLDWLKIHVVNL-TG 909
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ + R AF E +DDI DSAD P+ GR+WW+ +E+P+Q LA C+ + +A+R+S P
Sbjct: 910 LKKREPLQVRHAFAEEVMDDILDSADNPMTGRKWWMGSEEPWQTLACCMEIAKAVRTSDP 969
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
+ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYS +AA+V V ++D
Sbjct: 970 AAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSDVAAQVEVFRRQD 1029
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
A+R V A++L V RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 1030 ARRGSRV------AQVLEGFVTRKVVKQTVMTVVYGVTRFGGRLQIEKRLREMSDFPQEF 1083
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPY- 898
L+ AS Y + +L EMF +R I WL E A++I+ V W TPLG+P++QPY
Sbjct: 1084 -LWDASHYLVRQVFKSLQEMFSGSRAIQHWLTESARLISHMGSAVEWVTPLGIPIIQPYH 1142
Query: 899 -----RKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
++ GR S + + K +QR FPPNF+HSLD +HMM+TA+ C +
Sbjct: 1143 QEVKVKQGGRGLQSVSYSVNA--DSSLKPNKLKQRNGFPPNFIHSLDSTHMMLTALHCYR 1200
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP---- 1009
GLTF VHD +WTHA V MN++ RE+FV L+ PI + L F P
Sbjct: 1201 EGLTFVSVHDCFWTHAAHVPIMNQVCREQFVRLHSQPILQELSSFLVSRFCCSSRPQKLS 1260
Query: 1010 -------------PLPERGDFDLREVLGSPYFFN 1030
+P+ G FDL V S +FF+
Sbjct: 1261 QRLDDSKLRETLLAVPKPGAFDLERVKHSTFFFS 1294
>gi|193599102|ref|XP_001946877.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Acyrthosiphon pisum]
Length = 1249
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 303/848 (35%), Positives = 450/848 (53%), Gaps = 96/848 (11%)
Query: 237 WFEPLRDAIAKE------QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE 290
W E +R+AIA+E Q C + V PY L + I + ++ L
Sbjct: 444 WKETIRNAIARELESIRAQHNCLKSYRNVNIYPYLRVLNTEQYVDIIIQEVRKL-----A 498
Query: 291 HGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNK-----EDEEGDESNTVTTEQE 345
G ++ + +VR+ ++ K KK + K D N+ + +
Sbjct: 499 EGSETFSPTVNLLYRNLANQVRL-RYQIKYKKNTKILEKMKAVYTDYCSWYINSQNYDSQ 557
Query: 346 KLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAY--IQSPAD 403
R++ L+ K K + ++ QDD K W VG + ++ + + D
Sbjct: 558 NTRQQWQQLVHKYK--GIGADIE-QDD-KQWPSTVLNSVGKFLYNIIIKDIKIDVNIMKD 613
Query: 404 QLADAPPDIFPAFTHALRTVSKETKGG-------SKKYGVIECNPLVLKGLERTARHMVI 456
+ + + PAF R + K SK Y + E N L+ +
Sbjct: 614 HIEEE--HLLPAFYTVFRGQCQHVKQEIKPHPVLSKLYQLSEPNDLIFD----------V 661
Query: 457 PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLG 515
+PML PPV WT + G + + ++R A Q +++TPK++L P +AL+ L
Sbjct: 662 TMIPMLSPPVPWTSINSGGYIAAKADLIRLPQQAILQWHRLEQTPKQELYPALDALNQLA 721
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP----EKPE------TEDEAQLRKW 565
+ W +N VL V+ +++ GG + D+P P P+ ++DE R
Sbjct: 722 SIPWNINKPVLDVVLQVFRSGGS-----SKLDIPKPVSAFPSPQPILQSMSKDE---RSR 773
Query: 566 QWKVRNV-KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
+K R + K++ E S CD +LS+A + F+ PHN+DFRGR YP P+LNHL
Sbjct: 774 LYKERAILKRQKAEMFSLWCDALYRLSLANHFCGK-TFWLPHNMDFRGRVYPCPPHLNHL 832
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
GSD+ R +L FA+G LG +GL+WLKIH NL G + S + RL + E L DI +SA
Sbjct: 833 GSDMARSLLCFAKGEPLGSNGLNWLKIHCVNL-TGLKKRNSVKERLQYAEEILPDILNSA 891
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALG 744
PL G WW ++E+P+Q LA CI ++ AL+ +PE FISH PVHQDGSCNGLQHYAALG
Sbjct: 892 HNPLGGNMWWAESENPWQTLACCIEISHALQLENPENFISHFPVHQDGSCNGLQHYAALG 951
Query: 745 RDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKL 804
+D GA +VNL + P DVYS +AA +++R+ +D A D + AK L V RK+
Sbjct: 952 KDFAGAVSVNLTPSDIPQDVYSCVAA----MVERERSKDAA--NDVVIAKYLDGFVRRKV 1005
Query: 805 VKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAAR 864
+KQTVMT+VYGVT GAR QI ++LK+ + + +++ AS Y T +L EMF + +
Sbjct: 1006 IKQTVMTTVYGVTRFGARLQIAKQLKDIDS-FPKDKVWSASTYLVSKTFESLREMFTSTK 1064
Query: 865 GIMSWLGECAKIIA-SENQPVRWTTPLGLPVVQPYRKLGR---HTVKTSLQ-----ILTL 915
I W ECA++I+ S Q V W TPLGLPVVQPY + + ++ K+S++ IL +
Sbjct: 1065 EIQDWFTECARVISQSCGQSVEWITPLGLPVVQPYNRRNKCYDYSKKSSVKMGEHFILDM 1124
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
++ V +Q+ AFPPNF+HSLD SHMM+T++ C +AG+T+ VHD +WTH V+ M
Sbjct: 1125 ---YDRPNVMKQKNAFPPNFIHSLDSSHMMLTSLHCERAGITYVSVHDCFWTHPNSVEIM 1181
Query: 976 NRILREKFVELYEMPIFENL----LDSFQKSFPKL---------VFPPLPERGDFDLREV 1022
+I RE+FV L+ PI ENL ++ ++ S + VF LP++GDF L V
Sbjct: 1182 GKICREQFVALHNEPILENLSNFMINKYELSNYDITNDTQDMLNVFQQLPKKGDFKLNNV 1241
Query: 1023 LGSPYFFN 1030
L S YFF+
Sbjct: 1242 LDSVYFFS 1249
>gi|46121275|ref|XP_385192.1| hypothetical protein FG05016.1 [Gibberella zeae PH-1]
Length = 1357
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 291/823 (35%), Positives = 425/823 (51%), Gaps = 111/823 (13%)
Query: 250 ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG--RARVVQ-----AACI 302
ERC Y P +A +T ++ LL T G + V+Q + +
Sbjct: 405 ERC-------IYGPILRLGDPTRLAAVT---ILTLLNTSAIQGVDKGVVIQRLLNDVSRV 454
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
D I +++ + LEK +++ K GD + T TE+ K +TD A
Sbjct: 455 AQDDIRTQIQENAELEKRRRR-----KVKFTGDNAETQATEE----KTITD--------A 497
Query: 363 VRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ--LADAPPDIFPAFTHAL 420
++ W RA+VGS +++ L +TA ++ + + I PAF+H
Sbjct: 498 DEPVLSKNPAMGLWSVQVRARVGSILVKSLIETAKVKVVREHPISKERISQIQPAFSH-- 555
Query: 421 RTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFL 479
+ KG KK G++ N +++ L+R + ++PM+ P W ++G
Sbjct: 556 --MHAPRKG--KKVGMLFINADLVERLKREPMGDFLAKHLPMVSEPQPWRRINEGGFLSS 611
Query: 480 PSYVMRTH-GAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
+ ++R G +QR K K+ ++ VF+ LD LG T WR+NN VL V+ W+ G
Sbjct: 612 KATLVRLKTGDVEQRLYTKAAIKRGDMDQVFKGLDVLGKTPWRINNNVLDVMVEAWNSGD 671
Query: 538 RLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+A++ ++ P +P D R W V+ V+ E HSQRC + L+L +AR
Sbjct: 672 AIANMPTLTPNLVTPAEPTGSDPLLRRAWYRNVKAVENERAALHSQRCYMNLQLEIARAF 731
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
+ ++ Y+PHN+D+RGRAYP+ YLNH+G+D R +L FA G+ LG+ GL WLKIHLANL
Sbjct: 732 R-KQVIYFPHNMDYRGRAYPLPTYLNHMGADHTRALLRFANGKELGEKGLRWLKIHLANL 790
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
Y G DK S R AF +L +I +S PL G RWWLKAEDP+QCLA C L A
Sbjct: 791 Y--GYDKASFTEREAFATENLPNIVESVTNPLGGSRWWLKAEDPWQCLAACFELKAAHDL 848
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P ++S +PVHQDG+CNGLQHYAALG DT GA VNL+ ++PADVY +A V I
Sbjct: 849 EDPTKYVSSLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGDRPADVYMAVANLVKESI 908
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL------- 829
++A++ + + + ++ RK+VKQTVMT+VYGVT+ GA+ Q+ ++L
Sbjct: 909 AKEAEKGNQL------GQNCMGKITRKVVKQTVMTNVYGVTFSGAKQQVCKQLDALYPEM 962
Query: 830 -KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKIIASE--- 880
KE G P + Y AK ALG MF+ A I WLGE C + +++
Sbjct: 963 YKETGIPN-----LVTATYIAKHIFAALGTMFRGAHDIQYWLGEIGARACRALTSAQIEQ 1017
Query: 881 ---------------------------------NQPVRWTTPLGLPVVQPYRKLGRHTVK 907
+ WTTPL +PVVQPYRK ++
Sbjct: 1018 LAEEKDTPAAGAGATGTATATKRKELEELTSQFRSTIVWTTPLRMPVVQPYRKSTTREIR 1077
Query: 908 TSLQILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSY 965
T LQ +T Q TE V ++Q FPPNF+HSLD SHM+++A+ C GL FA VHDS+
Sbjct: 1078 TCLQAITYPTQGRTEPVDRRKQLQGFPPNFIHSLDASHMLLSALKCDDLGLNFAAVHDSF 1137
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
WTHA DVD +N +LRE F+ ++E + L F+ + ++
Sbjct: 1138 WTHAADVDILNGVLREAFIRIHEEDVVGRLAVEFEARYKGSIY 1180
>gi|169621404|ref|XP_001804112.1| hypothetical protein SNOG_13911 [Phaeosphaeria nodorum SN15]
gi|111057416|gb|EAT78536.1| hypothetical protein SNOG_13911 [Phaeosphaeria nodorum SN15]
Length = 1542
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 254/645 (39%), Positives = 354/645 (54%), Gaps = 70/645 (10%)
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY-MPMLVPPVKWTGYDK 473
AF H L V KK G + +P ++ L + + + P +PM+V P WT +
Sbjct: 606 AFHHGLEYVQ------GKKIGYLSPHPELVGKLRKDSVANIQPVNLPMIVEPKPWTSFQD 659
Query: 474 GAHFFLPSYVMRTH-GAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
G ++ P V+R G QR + + + V LD LG W++N +L V+ +
Sbjct: 660 GGYYTQPQRVVRQKAGDPAQRAYAESAIENGDMAKVLAGLDVLGKVPWQINAPILEVMLQ 719
Query: 532 IWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
W+ G +A L+ N P E P + KW K++ + HSQRC +
Sbjct: 720 AWNKGEGIAGLIPENHGLEPPVEPPADAPRVERAKWAKKLQEHENLKSGLHSQRCFQNFQ 779
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L +AR E+ Y+PH+VDFRGRAYP+ P LNH+G+DL RG+L+FA G+ LG GLHWL
Sbjct: 780 LEIARAFAAEKKIYFPHSVDFRGRAYPLSPVLNHIGADLARGLLKFANGKELGTVGLHWL 839
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIHLANLY G DK S + R F ++L DI+DSA PL+GRRWWL AEDP+QCLA C+
Sbjct: 840 KIHLANLY--GYDKASLKEREQFAMDNLSDIYDSATNPLDGRRWWLNAEDPWQCLACCME 897
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L A S+ P + S PVHQDG+CNGLQHYAALG D GA VNL ++P D+Y+G+A
Sbjct: 898 LKNAFDSADPTRYKSQFPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVA 957
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
V ++++DA++ V AK + ++ RK+VK+TVMT+VYGVT++GA+ Q++ L
Sbjct: 958 ELVKGMVKKDAEKGVDV------AKFVDGRITRKVVKRTVMTNVYGVTFMGAKKQVEDEL 1011
Query: 830 KERGAPMEEAE----LFGASCYAAKVTLTALGEMFQAARGIMSWLGECA----------- 874
K EE E L + Y A ALG++F A+ I WLGEC
Sbjct: 1012 KAIFPKFEETEKIRSLGIVAMYVAIKIFEALGQIFNGAQEIQYWLGECGDRITTSLSAEQ 1071
Query: 875 ----------------------------------KIIASENQPVRWTTPLGLPVVQPYRK 900
K I + + WTTPL +PVVQPYRK
Sbjct: 1072 VEKIGQRGEGKEPTFDPKFKTPKKLTKTHVTNMNKAIEAFKTSIIWTTPLKMPVVQPYRK 1131
Query: 901 LGRHTVKTSLQILT-LQRETEKVMVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTF 958
V+ Q +T ++R + ++ KR Q AFPPNF+HSLD +HM ++A+ C + GL F
Sbjct: 1132 DSTTRVRAKFQDITVVKRSSHDIVDKRKQLQAFPPNFIHSLDATHMTLSALKCHELGLDF 1191
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
A VHDS+WTHA D+ +N ILR+ FV ++ I L + F+ +
Sbjct: 1192 AAVHDSFWTHASDIPNLNVILRDAFVRMHSDDIVGRLAEEFKARY 1236
>gi|390342830|ref|XP_001198516.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 1480
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/637 (39%), Positives = 365/637 (57%), Gaps = 55/637 (8%)
Query: 432 KKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRTH 487
K G I+ +P L L +TA+ + + +PML PP+ WT GA+ + +MR+
Sbjct: 861 KHVGFIKPHP-TLVDLFQTAKDPNLEFDTNMLPMLTPPIPWTSVRFGAYPLSSTKIMRSK 919
Query: 488 -GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN 546
GA Q D +++TP ++L P+ +AL+ L W +N +L + ++ G A V +
Sbjct: 920 DGAHQHLDLLEKTPPQELYPILDALNQLSTVPWIINKPILDTVISVFRNSGSKALDVPQP 979
Query: 547 DVPLPEKPETEDEA---QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
P P E +L + + +K E HS R D+ KLS+A K+++E F+
Sbjct: 980 ASACPHPPRITSEVSREELAQIHRERAAARKMQAEMHSLRMDMLYKLSIADKVRNE-IFW 1038
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
+PHN+DFRGR YP P+ NH G+D+ R +L FA G LG+ G WLKIHL NL G +
Sbjct: 1039 FPHNMDFRGRVYPCPPHFNHFGNDVTRSLLLFARGMPLGEEGFRWLKIHLVNL-TGHKKR 1097
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
S E RL + + L +I DSADKPL+G +WW +++ +Q LA C+ +T+A+RS P ++I
Sbjct: 1098 CSVEERLQYAHDMLPEIMDSADKPLDGNKWWQNSDEQWQTLASCMEVTKAIRSGDPTSYI 1157
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD 783
SH+P+HQDGSCNGLQHYAALGRD +GA VNL + P DVYSG+A V + ++DA++
Sbjct: 1158 SHLPIHQDGSCNGLQHYAALGRDLIGAEQVNLHPFDIPQDVYSGVAQMVEELRRQDAEKG 1217
Query: 784 PAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG 843
+ A L + R +VKQTVMT VYGVT G R QI ++L+E + + F
Sbjct: 1218 NKI------ALALAGHIKRNVVKQTVMTVVYGVTSYGGRRQILKQLREEDDLTMDQKWFA 1271
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR 903
A KV +L +MF R I +L E A +I+ + V W TPLGLP+VQPY
Sbjct: 1272 AGYITLKV-FQSLRKMFTKTREIQDYLTESAWLISKAGETVEWVTPLGLPIVQPYH---- 1326
Query: 904 HTVKTSLQILT----------LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
K SL++++ + E+ +Q+ AFPPNF+HSLD +HMM+T++ ++
Sbjct: 1327 ---KKSLKLISHGGRNVYHEERHSQAERPDTMKQKNAFPPNFIHSLDSTHMMLTSLYSQR 1383
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL------- 1006
AG+ FA VHD YWTHA V++MN+I R +FV+L++ PI +NL + + + +L
Sbjct: 1384 AGIAFASVHDCYWTHASSVNQMNKICRSQFVKLHKEPILDNLSEFMVEKYGQLDMQDTSK 1443
Query: 1007 -------------VFPPLPERGDFDLREVLGSPYFFN 1030
+PE+GDFDL VL S YFF+
Sbjct: 1444 LKRGSRNMKILEDYIKIVPEKGDFDLDNVLKSTYFFS 1480
>gi|196004815|ref|XP_002112274.1| hypothetical protein TRIADDRAFT_25308 [Trichoplax adhaerens]
gi|190584315|gb|EDV24384.1| hypothetical protein TRIADDRAFT_25308, partial [Trichoplax
adhaerens]
Length = 607
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 364/623 (58%), Gaps = 36/623 (5%)
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+R ++GS ++E+ + A + + A PAF H ++ G I+
Sbjct: 2 SRLQLGSAIVEIFLRVAKVNVNLMK-EKAEEKFIPAFYHVY------VFQKQRQVGFIKP 54
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRT 499
+P V+K + M +PMLVP W + G + P+ +MR +D +
Sbjct: 55 HPNVMKLGKFL---METSMLPMLVPSRPWLCHHDGGYVATPAPIMRYREDCFDQDVLLAK 111
Query: 500 PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC----GGRLADLVDRNDVPLPE--- 552
++L ++++++ LG+ W+VN RVL D+ C G + D+ D +P+P
Sbjct: 112 SSRKLRSIYDSINYLGSCPWKVNKRVL---DKCIECFNETGSDILDIPDPRLIPMPPYPV 168
Query: 553 KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRG 612
P+ E + + R + + R V K+ RE HS R D+ KLSVA+ +++ F+ PHN+DFRG
Sbjct: 169 DPDIEPQEKRRIIELR-RQVAKKQREHHSLRMDVLYKLSVAKHFEND-IFWLPHNMDFRG 226
Query: 613 RAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAF 672
R YP+ P+L+H+G+DL R ++ FA GR LG G W+K+HLAN++ G + K S R+ F
Sbjct: 227 RVYPIPPHLSHVGNDLSRSLMLFAIGRPLGTEGFDWIKVHLANVH-GQMSKASLTDRINF 285
Query: 673 TENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDG 732
TE+ ++I DSAD P G +WW E P+Q LA C+ L + R +PE +IS+ PVHQDG
Sbjct: 286 TESLKNEILDSADNPFTGDKWWQTGEHPWQTLATCMELADVWRCDNPEQYISYFPVHQDG 345
Query: 733 SCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR 792
+CNGLQHYAALGRDTLGA VNLV+R P D+YS +A V +DA++ +
Sbjct: 346 TCNGLQHYAALGRDTLGAEQVNLVSRGIPQDIYSAVARLVEEHRAKDAKK------NNFN 399
Query: 793 AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVT 852
A L +V RK+VKQTVMT VYGVT +G R+QI R+L+ E +F AS Y ++
Sbjct: 400 ALWLEGKVSRKVVKQTVMTIVYGVTRVGGREQIARQLERLQELENEERIFTASQYLVRIV 459
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQI 912
L +MF +AR I WL + A+ IAS V W TPLGLPV+QPYR V
Sbjct: 460 FDQLSKMFYSARRIQEWLNDSARQIASAGSLVEWITPLGLPVLQPYRVPVYKEVH----- 514
Query: 913 LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
R K V +Q+ AFPPN++HSLD +HMM+T++ C+ + TF VHDS+WTHA V
Sbjct: 515 --FNRVDVKPHVSKQKMAFPPNYIHSLDSTHMMLTSLECQASDTTFVAVHDSFWTHAATV 572
Query: 973 DEMNRILREKFVELYEMPIFENL 995
+E+NRI R++F++L++ P+ E+L
Sbjct: 573 NELNRICRKQFIKLHQEPLLEDL 595
>gi|397502338|ref|XP_003821818.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Pan paniscus]
Length = 1273
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 272/727 (37%), Positives = 392/727 (53%), Gaps = 92/727 (12%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ +V + +K RE HS R + +LS+A+ ++D
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRR---EVVHCQKVAREMHSLRAEALYRLSLAQHLRDR 792
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL
Sbjct: 793 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL--T 849
Query: 660 GVDKLSH--------------------------------------EGRLAFTENHLDDIF 681
G+ K +L F+ ++
Sbjct: 850 GLKKREAPAFPPPPHPPSSFLPRRPQVPCPPSSPGSSGNTCFSPVHPQLPFSIRGYGELI 909
Query: 682 DSADK--PLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQH 739
+ P GR+WW+ AE+P+Q LA C+ + A+R+S P ++SH+PVHQDGSCNGLQH
Sbjct: 910 QPPPRLSPTCGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQH 969
Query: 740 YAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ 799
YAALGRD++GAA+VNL + P DVYSG+AA+V V ++DAQR V A++L
Sbjct: 970 YAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRV------AQVLEGF 1023
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEM 859
+ RK+VKQTVMT VYGVT G R QI++RL+E +E ++ AS Y + +L EM
Sbjct: 1024 ITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEASHYLVRQVFKSLQEM 1082
Query: 860 FQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR-HTVKTSLQILTLQRE 918
F R I WL E A++I+ V W TPLG+PV+QPYR + + +Q +T
Sbjct: 1083 FSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHN 1142
Query: 919 ---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+ K ++Q+ FPPNF+HSLD SHMM+TA+ C + GLTF VHD YWTHA DV M
Sbjct: 1143 GDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVM 1202
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFP------------KLVFPPLPERGDFDLREVL 1023
N++ RE+FV L+ PI ++L K F K +P+ G FDL +V
Sbjct: 1203 NQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQVK 1262
Query: 1024 GSPYFFN 1030
S YFF+
Sbjct: 1263 RSTYFFS 1269
>gi|194759172|ref|XP_001961823.1| GF14737 [Drosophila ananassae]
gi|190615520|gb|EDV31044.1| GF14737 [Drosophila ananassae]
Length = 1362
Score = 451 bits (1160), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/707 (37%), Positives = 384/707 (54%), Gaps = 74/707 (10%)
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQS------PADQLADAPPDIFPAFTHALRTVSKETK 428
PW + VG + +L + I S + A P ++ PAF R + K
Sbjct: 679 PWPSNVLTGVGRFLYNILMRDIKIDSHLMRTKSKSKTASQPQNLLPAFYTLFRNQGRLVK 738
Query: 429 GGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVM 484
K + V L L R +R + + +PML PP W+ G + S ++
Sbjct: 739 EEVKPHPV-------LARLLRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 791
Query: 485 RT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV 543
R H A QQ + ++ + +QL P ++L+ L + WRVN ++L V+ +++ GG
Sbjct: 792 RLPHQAVQQWERIRASNPQQLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDA---- 847
Query: 544 DRNDVPL---------------PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+ DVP E + + ++++ K+ + ++ E +S CD
Sbjct: 848 -KLDVPQPPSSLPPLSSLPPKNAEGSNVSNADRAKQFRDKLVH-RRRQAEMYSLWCDALY 905
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+LS+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F + + LG G W
Sbjct: 906 RLSLAQHFRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSW 964
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LK+H NL G + S RL + E + DI DSAD PL GR WW K+++P+Q LA C+
Sbjct: 965 LKLHCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCM 1023
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
+ RS P ++S P+HQDGSCNGLQHYAALGRD GA +VNL P DVYS +
Sbjct: 1024 EIANVHRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDQAGACSVNLAPSAIPQDVYSAV 1083
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
AA V + DAQ V A+ L V RK++KQTVMT+VYGVT GAR QI R+
Sbjct: 1084 AALVEKSRKADAQNGLHV------AEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQ 1137
Query: 829 LKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWT 887
LK+ + ++ AS Y T +L EMF + R I W ECA++I+ +Q V W
Sbjct: 1138 LKDIDE-FPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWV 1196
Query: 888 TPLGLPVVQPY-RKLGRHTVKTSLQI---LTLQRETEKVMVKRQRTAFPPNFVHSLDGSH 943
TPLGLPVVQPY R+ +HT +T L++ L++ E+ + +Q+ AFPPNF+HSLD SH
Sbjct: 1197 TPLGLPVVQPYNRQDVKHTARTGLKVTANLSMDM-YERPNILKQKNAFPPNFIHSLDSSH 1255
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
MM+T++ C + G+TF VHD +WTHA V ++NR+ RE+FV L+ PI E L + + ++
Sbjct: 1256 MMLTSLHCERHGITFVSVHDCFWTHANTVPDLNRMCREQFVALHSQPILEQLSEFMRHTY 1315
Query: 1004 P--------------------KLVFPPLPERGDFDLREVLGSPYFFN 1030
+P++GDFDLR VL S YFF+
Sbjct: 1316 SFKENDFTNDGSVEDLSKRQLNRTLKQMPQKGDFDLRNVLDSVYFFS 1362
>gi|451993672|gb|EMD86144.1| hypothetical protein COCHEDRAFT_1198114 [Cochliobolus heterostrophus
C5]
Length = 1432
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 287/903 (31%), Positives = 445/903 (49%), Gaps = 125/903 (13%)
Query: 195 RQVKIETEAWEKAANEYR---ELLMDMCEQKLAPNLPYMKSLFLGWFEPL--------RD 243
RQ+++E + E A ++ E L ++ + P ++++ GW+ L D
Sbjct: 375 RQIQMEQDGVEAAVKRWKAEDEKLQEIGIHGIMNKKP-IQAIMYGWYTALVPLFKKRIED 433
Query: 244 A--IAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG-GEHGRA-RVVQA 299
A + E + Y + ++ + +A IT+ + + G GE A ++
Sbjct: 434 AKKVLLEPPKATTRDDAHEYGVWLERCTPEKLAAITVARATSSAVKGKGEDSSALKIASL 493
Query: 300 ACIIGDAI------EQEVRIHKFLEKTKKKNETKNKED-EEGDESNTVTTEQEKLRKKVT 352
+ +G+ I E + R FL+K +K+ + S++ TE + + +
Sbjct: 494 SIAVGNDIQDYLNAETQTRRDAFLKKQRKQTRLNLVSTLAKSVASSSAETETQSAKSSIF 553
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPP 410
+ +K +P AR K+G+ IE L Q+A + A + +
Sbjct: 554 EF-EKVDMPL----------------SARTKLGAMCIEHLLQSATLVVTAKDPRTGKSVS 596
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMV-IPYMPMLVPPVKWT 469
AF H + KK G + + ++ + + H + +PM+V P W+
Sbjct: 597 RSMAAFHHQIGFHQ------GKKLGFLVPHHELMDKMRTDSVHSIQTVRLPMVVEPKPWS 650
Query: 470 GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK------QLEPVFEALDTLGNTKWRVNN 523
++ G ++ +P ++R G D+ +R + + V LD LG W++N
Sbjct: 651 SFEDGGYYTVPQKIVRQKGG----DSAQRAYAQLAIENGDMFKVMAGLDVLGKVPWQINA 706
Query: 524 RVLSVLDRIWSCGGRLADLVDRNDVPL---PEKPETEDEAQLR-KWQWKVRNVKKENRER 579
V V+ R W+ G + LV + + P +P E Q R +W ++ +
Sbjct: 707 PVFDVMARAWNAGESIGSLVGEDAITSLKRPSEPSAEASFQERSRWNKALQEYEDTIGGL 766
Query: 580 HSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 639
HSQRC +L AR +E+ Y+PH+VDFRGRAYP+ P LNH+GSDL RG+L+FA G+
Sbjct: 767 HSQRCFQNFQLETARAYANEKKIYFPHSVDFRGRAYPIPPILNHIGSDLSRGLLKFAHGK 826
Query: 640 TLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAED 699
LG GL WLKIHLANLY G DK S R FT +H+ +I DSA +PLEG+RWW KAED
Sbjct: 827 ELGTVGLQWLKIHLANLY--GFDKASLREREQFTMDHMSEICDSASQPLEGQRWWTKAED 884
Query: 700 PFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVARE 759
P+QCLA CI L A P F+S +PVHQDG+CNGLQHYAALG D GA VNL +
Sbjct: 885 PWQCLACCIELKNAFDLPDPTRFVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSD 944
Query: 760 KPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYI 819
+P D+Y+G+A V ++ +DA + V A + + RK+VK+TVMT+VYGVT+I
Sbjct: 945 RPQDIYTGVAELVQEMVAKDANKGLPV------ANFIDGHISRKVVKRTVMTNVYGVTFI 998
Query: 820 GARDQIK---RRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
GA+ Q++ R L P E+ + G + Y A+ ALG++F A+ I WLGEC
Sbjct: 999 GAKQQVQDELRNLFPHFQPTEKVKSLGVVALYVAQRIFEALGKIFNGAQEIQYWLGECGD 1058
Query: 876 IIASE------------------------------------------------NQPVRWT 887
I + + WT
Sbjct: 1059 RITTSISAEQIKRIQERFEGMDPAGAVYDPKFAAPKKVTALQINKLNKNMEKFKTSIIWT 1118
Query: 888 TPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMM 945
+PL +P+VQPYRK ++T +Q +T+ +++++ V ++Q AFPPNF+HSLD +HM
Sbjct: 1119 SPLKMPIVQPYRKDSVQKIRTKIQDITITKKSQQDEVDKRKQLQAFPPNFIHSLDATHMT 1178
Query: 946 MTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPK 1005
++A+ + GL FA VHDS+WTHA D+ +N ILR+ FV ++ I L F +
Sbjct: 1179 LSALKASEMGLDFAAVHDSFWTHASDIPNLNVILRDAFVRMHSEDIIARLAAEFSARYAG 1238
Query: 1006 LVF 1008
++
Sbjct: 1239 AMY 1241
>gi|451856581|gb|EMD69872.1| hypothetical protein COCSADRAFT_32528 [Cochliobolus sativus ND90Pr]
Length = 1438
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 288/901 (31%), Positives = 439/901 (48%), Gaps = 121/901 (13%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKL--APNLPYMKSLFLGWFEPLRDAIAKEQERC 252
RQ+++E + E A ++ M E + N ++++ GW+ L K E
Sbjct: 380 RQIQMEQDGMEAAVKRWKAEDEKMQEIGIHGVMNTKSIQAMMYGWYTALVPLFKKRIEHA 439
Query: 253 RMA----------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG-GEHGRARVVQAAC 301
+ Y + ++ + +A IT+ + + G GE A + A
Sbjct: 440 KQVLLEPPKATTRDDAHEYGVWLERCKPEKLAAITVARSTQSAVKGKGEDSSALKIAALS 499
Query: 302 I-IGDAIEQ------EVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 354
I +G+ IE + R FL+K +K+ N +T +TE++ K L
Sbjct: 500 IAVGNDIEDYLNAETQTRRDAFLKKQRKQTRL-NLVSTLAKSGSTSSTEKQPQSAKSNML 558
Query: 355 -IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPD 411
+K +P AR K+G+ IE L Q+A + A + +
Sbjct: 559 EFEKVHMPL----------------SARTKLGAMCIEQLLQSATLVVTAKDPRTGKSVSR 602
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGY 471
AF H + G K ++ + L+ K + + +PM+V P W+ +
Sbjct: 603 SMAAFHHQV-----GFHQGKKLGFLVPHHELMAKMRTDSVHSIQTVRLPMVVEPKPWSSF 657
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK------QLEPVFEALDTLGNTKWRVNNRV 525
+ G ++ +P ++R G DT +R + + V LD LG W++N V
Sbjct: 658 EDGGYYTVPQKIVRQKGG----DTAQRAYAQLAIENGDMSKVMAGLDVLGKVPWQINAPV 713
Query: 526 LSVLDRIWSCGGRLADLVDRNDVPL---PEKPETEDEAQLR-KWQWKVRNVKKENRERHS 581
V+ R W+ G + LV + + P +P E Q R +W ++ + HS
Sbjct: 714 YDVMARAWNAGESIGSLVGEDAITSLKRPSEPSAEASFQERSRWNKALQEYEDTIGGLHS 773
Query: 582 QRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL 641
QRC +L AR +E+ Y+PH+VDFRGRAYP+ P LNH+GSDL RG+L+FA G+ L
Sbjct: 774 QRCFQNFQLETARAYVNEKKIYFPHSVDFRGRAYPIPPILNHIGSDLSRGLLKFAHGKEL 833
Query: 642 GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPF 701
G GL WLKIHLANLY G DK S R F +H+ +I DSA +PLEG+RWW KAEDP+
Sbjct: 834 GAVGLQWLKIHLANLY--GFDKASLREREQFAMDHMSEICDSASQPLEGQRWWTKAEDPW 891
Query: 702 QCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKP 761
QCLA CI L A P F+S +PVHQDG+CNGLQHYAALG D GA VNL ++P
Sbjct: 892 QCLACCIELKNAFDLPDPTRFVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRP 951
Query: 762 ADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGA 821
D+Y+G+A V ++ +DA + + A + + RK+VK+TVMT+VYGVT++GA
Sbjct: 952 QDIYTGVAELVKEMVAKDASKGVPL------ANFIDGHISRKVVKRTVMTNVYGVTFMGA 1005
Query: 822 RDQIK---RRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKII 877
+ Q++ R L P ++ + G + Y A+ ALG++F A+ I WLGEC I
Sbjct: 1006 KQQVQDELRSLFPHFQPTDKVKSLGVVALYVAQRIFEALGKIFNGAQEIQYWLGECGDRI 1065
Query: 878 ASE------------------------------------------------NQPVRWTTP 889
+ + WT+P
Sbjct: 1066 TTSISAEQIKRIQERFEGMNPAAALYDPKFAAPKKVTTLQINKLNKNMEKFKTSIIWTSP 1125
Query: 890 LGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMT 947
L +P+VQPYRK ++T +Q +T+ +++++ V ++Q AFPPNF+HSLD +HM ++
Sbjct: 1126 LKMPIVQPYRKDTVQKIRTKIQDITVSKKSQQDEVDKRKQLQAFPPNFIHSLDATHMTLS 1185
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV 1007
A+ + GL FA VHDS+WTHA D+ +N ILR+ FV ++ I L F + +
Sbjct: 1186 ALKANEMGLDFAAVHDSFWTHASDIPNLNIILRDAFVRMHSEDIIARLAAEFSARYAGAM 1245
Query: 1008 F 1008
+
Sbjct: 1246 Y 1246
>gi|346319151|gb|EGX88753.1| mitochondrial DNA-directed RNA polymerase, putative [Cordyceps
militaris CM01]
Length = 1392
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/693 (38%), Positives = 377/693 (54%), Gaps = 92/693 (13%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQS----PADQLADAPPDIFPAFTHALRTVSKETKG 429
+PW +A+VG+ +++ L +A +++ P + PAFTH + + KG
Sbjct: 538 QPWSMQIKAQVGAFLVKALIDSAKVKAIKRHPTS--GELVSQYQPAFTH----IQQPRKG 591
Query: 430 GSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTH- 487
KK G++ + +++ L+R + ++PM+V P W + G + V+R
Sbjct: 592 --KKVGMLIMHNTLVEQLKREPLGDFLAKHLPMIVEPKPWRNMNDGGFLESKTSVIRVQP 649
Query: 488 GAKQQRDTVKRTPK-KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD---LV 543
G +QR K ++ VF+ LD LG T W++N VL+V+ W+ G +A+ L
Sbjct: 650 GNVEQRLYAKAAVDCGDMKQVFKGLDVLGQTAWQINRGVLNVMMEAWNSGEEIANMPALE 709
Query: 544 DRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
+ DVP E T + A +KW ++ ++ E HSQRC + L+L +AR +++ Y
Sbjct: 710 PKFDVP-AEPDSTANPALHKKWIRDIKAIENERSGLHSQRCYMNLQLEIARAFRNQT-VY 767
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
+PHNVD+RGRAYPM YLNH+G+D R +L F +G+ LG++GL WLKIHLAN+Y G+DK
Sbjct: 768 FPHNVDYRGRAYPMPTYLNHMGADHARALLSFEKGKPLGETGLRWLKIHLANVY--GLDK 825
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
S E R AF I +SA PL G RWWLKAEDP+QCLA C L AL P T++
Sbjct: 826 ASFEEREAFANESASHIIESATNPLNGSRWWLKAEDPWQCLAACFELKGALELEDPTTYV 885
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD 783
S +P+ QDG+CNGLQHYAALG D GA VNL ++PADVYS +A V I +DA
Sbjct: 886 SRLPIQQDGTCNGLQHYAALGGDLWGAKQVNLEPGDRPADVYSAVADLVKEAIAKDA--- 942
Query: 784 PAVFPDALRAK---LLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL--------KER 832
A + K +L ++ RK+VKQTVMT+VYGVT+ GA+ Q+ R++ K+
Sbjct: 943 ------AAKNKFGLVLDGKITRKVVKQTVMTNVYGVTFAGAKKQVCRQIDALYPDLGKQC 996
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CAKIIASENQ----- 882
G P S Y A+ TAL MF+ A I WLGE C + ++ Q
Sbjct: 997 GIPN-----LMLSTYIARHVFTALASMFRGAHDIQYWLGEIGGRVCRALTPAQLQHIADE 1051
Query: 883 ---------------------------------PVRWTTPLGLPVVQPYRKLGRHTVKTS 909
V WTTPL +PV QPYRK ++T
Sbjct: 1052 YANGSTDNKKGKVAKASKAGKSGFDELTKQFRSTVVWTTPLRMPVAQPYRKTTAREIRTC 1111
Query: 910 LQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWT 967
LQ L T+ V ++Q FPPNF+HSLD SHM++TA+ C + GL FA VHDS+WT
Sbjct: 1112 LQSLAYHSSDSTDPVNRRKQLQGFPPNFIHSLDASHMLLTALECHERGLDFAAVHDSFWT 1171
Query: 968 HACDVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
HA DV+ MN ++R+ F++++E + L F+
Sbjct: 1172 HAADVNVMNEVIRDSFIKIHEEDVIGRLAAEFE 1204
>gi|332026140|gb|EGI66288.1| DNA-directed RNA polymerase, mitochondrial [Acromyrmex echinatior]
Length = 1257
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/594 (40%), Positives = 345/594 (58%), Gaps = 39/594 (6%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+P+ PP W + G + + +R K ++ TP KQL PVF+ L+ LG+
Sbjct: 681 LPIFSPPRPWVNVNTGGYLLSKAAFVRDPYMKPSH-LLRNTPTKQLYPVFDCLNQLGSIP 739
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE---TEDEAQLRKWQWKVRNVKKE 575
W++N +L +L +I+ GG V + +P + +E ++ + K+
Sbjct: 740 WKINIPMLDILIQIFRDGGSKELNVPQPSTVIPSSTDIIASETNKSPKEISKLLLQFKRM 799
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
E HS CD KLS+A +D+ F+ PHN+DFRGRAYP+ P+L HL SDL R IL F
Sbjct: 800 KNEMHSLWCDCLYKLSLANHFRDK-VFWMPHNLDFRGRAYPVPPHLTHLSSDLGRSILMF 858
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
A+G+ LG GL WLKIH N+ +G + RL F LD I DSA PL G+ WW
Sbjct: 859 AQGKPLGSDGLDWLKIHAINM-SGLKKREPMYKRLEFANEILDLIVDSARNPLTGKMWWT 917
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
KA++P+Q LA C + AL+S + E +I +P+HQDGSCNGLQHYAALGRD +GA +VNL
Sbjct: 918 KADEPWQTLATCKEIDNALQSPNVEKYICRLPIHQDGSCNGLQHYAALGRDLIGAKSVNL 977
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
++P DVYS +A V D ++ A D + A++L + RK++KQTVMT+VYG
Sbjct: 978 YPSDRPQDVYSVVAKMV-----DDYRKSDADAGDKI-AQVLEGHISRKVMKQTVMTTVYG 1031
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VT GAR QI R+L + ++ ++ S Y + T +L MF++A+ I +W +CA+
Sbjct: 1032 VTKFGARLQIARQLSDL-KDFDQTYIWSGSMYLVEKTFMSLQSMFESAKEIQNWFTDCAR 1090
Query: 876 IIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPN 934
I NQ V+W TPLGLPV+QPY K + + + L+I K+ +Q+ AF PN
Sbjct: 1091 TITIRCNQYVQWVTPLGLPVIQPYSK-HKKSNNSKLKIF------RKLDTVKQKNAFAPN 1143
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
F+HSLD SHMM+T++ C +AG+TF VHD +WTH C VD MNRI RE+F+ L+ PI E+
Sbjct: 1144 FIHSLDSSHMMLTSLYCEQAGITFMSVHDCFWTHPCTVDIMNRICREQFIALHSEPILED 1203
Query: 995 LLDSFQKSFPKL------------------VFPPLPERGDFDLREVLGSPYFFN 1030
L + F K++ K +F +P++G FD+ + S YFFN
Sbjct: 1204 LSEFFHKNYRKQIVSNKRDVKLRGDDVSLEIFQKIPKKGTFDINMIKSSRYFFN 1257
>gi|322785441|gb|EFZ12112.1| hypothetical protein SINV_03744 [Solenopsis invicta]
Length = 1179
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/594 (40%), Positives = 341/594 (57%), Gaps = 39/594 (6%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+P PP W + G + +R K R +K TP KQL PV + ++ LG+
Sbjct: 603 LPTFSPPRPWIDINTGGYLLSKVPFVRDIYMKPSR-LLKNTPTKQLYPVLDCVNQLGSIP 661
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET---EDEAQLRKWQWKVRNVKKE 575
WR+N +L +L +I+ GG V + +P E E + R+ + +K+
Sbjct: 662 WRINVPILDILIQIFREGGSKELNVPQPSTVVPSSSEVISNETDKNSREIAKLLLQLKRT 721
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
E ++ CD KLS+A +D+ F+ PHN+DFRGRAYP+ P+L HL SDL R IL F
Sbjct: 722 RNEMYALWCDCLYKLSLANHFRDK-VFWMPHNLDFRGRAYPIPPHLTHLSSDLGRSILMF 780
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
A+G+ LG GL WLKIH N+ G + RL F LD I DSA PL G WW
Sbjct: 781 AQGKPLGPEGLDWLKIHTINM-TGLKKREPMHKRLEFANKILDLIVDSARNPLTGEMWWA 839
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
KA++P+Q LA C + AL++ +PE +I +P+HQDGSCNGLQHYAALGRD +GA +VNL
Sbjct: 840 KADEPWQTLAACKEIDNALQAPNPEKYICRLPIHQDGSCNGLQHYAALGRDLIGAKSVNL 899
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
++P DVYS +A V + DA+ + A+ L V RK++KQTVMT+VYG
Sbjct: 900 YPSDRPQDVYSVVANMVDEYRKIDAEAGNKI------ARALEGHVSRKVMKQTVMTTVYG 953
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
VT GAR QI R+L + ++ ++ S Y + T +L MF++A+ I +W +CA+
Sbjct: 954 VTKFGARLQIARQLSDL-KDFDQKYVWSGSMYLVEKTFMSLQSMFESAKEIQNWFTDCAR 1012
Query: 876 IIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPN 934
+I NQ ++W TPLGLPV+QPY K + T+ +++ K+ +Q+ AF PN
Sbjct: 1013 VITIRCNQYIQWVTPLGLPVIQPYSKHSK-TINPKIKVF------RKLDTVKQKNAFAPN 1065
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
F+HSLD HMM+T++ +AG+TF VHD YWTH C VD MNRI RE+F+ L+ PI E+
Sbjct: 1066 FIHSLDSCHMMLTSLYSEQAGITFMSVHDCYWTHPCTVDIMNRICREEFIALHSEPILED 1125
Query: 995 LLDSFQKSFPKL------------------VFPPLPERGDFDLREVLGSPYFFN 1030
L + F K + K +F +P++G+FD+ +L S YFF+
Sbjct: 1126 LSEFFSKKYTKYYTSDGRLISIKNNDIALEIFKQVPKKGNFDINTILSSRYFFS 1179
>gi|198414501|ref|XP_002124660.1| PREDICTED: similar to RNA polymerase [Ciona intestinalis]
Length = 1114
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 280/814 (34%), Positives = 422/814 (51%), Gaps = 64/814 (7%)
Query: 245 IAKEQERCRMAKHKVA-YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+++E + R KH+ + P+ LP + I + +M + +G A ++
Sbjct: 337 VSEEDKWTRYRKHRFSGVYPFLCVLPPETFVDIIIQFMMSMSASG---------NIASVL 387
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
+ V H + + K +N D + ++ T + L + + L + K+ +
Sbjct: 388 CYELGSSVYSHHLINQLKHDGYFENLRMIYSDYT-SMYTHRCNLSPRQSWLQLEDKIGNI 446
Query: 364 RRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTV 423
+ +PW VG +++E++ T D + PA ++ +
Sbjct: 447 ----STRHRIEPWHNMWLFTVGLKLLEVMVSTLTFN--LDWGSGVKLRNIPAVFNSYKV- 499
Query: 424 SKETKGGSKKYGVIECNPLVLKGLERTARH---MVIPYMPMLVPPVKWTGYDKGAHFFLP 480
G K YG+ +P + L A+H +PM+VPP+ W +G + P
Sbjct: 500 -----WGGKMYGMAVPHPGYVAMLS-DAKHDFEFETGILPMVVPPLPWVNPSQGGYLASP 553
Query: 481 SYVMRTHG--AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538
+ +R++ Q+ DT+ ++ + V ++L+ LG+ W++N RVL V ++ G
Sbjct: 554 TKFVRSYRDVIGQEEDTIDQS---DVTTVMDSLNILGSVGWKINQRVLDVQLCLFRNNGD 610
Query: 539 LADLVDRNDVPLPEKPETEDEAQL----RKWQWKV-RNVKKENRERHSQRCDIELKLSVA 593
+ P+ P+ + A L R ++ R K E +S D KLS+A
Sbjct: 611 KKLSIPPPATSAPKPPDLSNVADLPPNKRGEMFEAARAATKLKLEMNSLHADGLYKLSIA 670
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHL 653
+D+ ++PHN+DFRGR YP+ +LN++GSD+ R + FA+G+ LG GL+WLKIHL
Sbjct: 671 DYYRDDI-VWFPHNLDFRGRTYPVSRHLNYMGSDVSRSLFLFADGKPLGGDGLNWLKIHL 729
Query: 654 ANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA 713
NL G K RL + +D+I DSAD+PL+GR WW ++++P+Q LA C L +A
Sbjct: 730 VNL-TGEKKKEGMAARLDYANEMMDEILDSADRPLDGRCWWKESDEPWQTLAACFVLADA 788
Query: 714 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL 773
LR+ +PE ++ ++PV+QDGSCNGLQHYAALGRDTLGA VNL P D+Y+G+AA+V
Sbjct: 789 LRTRNPEDYVCNLPVYQDGSCNGLQHYAALGRDTLGAQQVNLAPSSVPQDIYAGVAAKVE 848
Query: 774 VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
I DA R V AK+L V R++VKQTVMT+VYGVT G Q++R+L
Sbjct: 849 NIRSLDADRGSEV------AKVLEGFVTRQVVKQTVMTTVYGVTRYGGVLQVQRQLLYLD 902
Query: 834 APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLP 893
+ L GA Y ++ E+F A I W + A+ ++ PV W TPLGL
Sbjct: 903 DFPRQHSLKGA-MYLVDALFQSINEIFTGASHIQKWFTDIARCVSRGGNPVEWETPLGLR 961
Query: 894 VVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
VVQPY + T+ T LQ + R T V +Q AFPPNF+HSLD +HMM+TA+ C K
Sbjct: 962 VVQPYHSIMTQTMDTQLQRINFTRATTAPNVMKQTNAFPPNFIHSLDSTHMMLTALYCHK 1021
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP---- 1009
G+ F+ VHD YWTHACDVD MN I RE+FV+L+ PI E L +K F K P
Sbjct: 1022 FGIKFSAVHDCYWTHACDVDIMNVICREQFVKLHSQPILEKLASHLKK-FLKPAEPHDIT 1080
Query: 1010 -------------PLPERGDFDLREVLGSPYFFN 1030
+P +GDFDL +V S +FF+
Sbjct: 1081 NTLQEELLLSLLNNVPTKGDFDLNQVKNSVFFFS 1114
>gi|242009042|ref|XP_002425302.1| DNA-directed RNA polymerase, putative [Pediculus humanus corporis]
gi|212509067|gb|EEB12564.1| DNA-directed RNA polymerase, putative [Pediculus humanus corporis]
Length = 1102
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/615 (40%), Positives = 353/615 (57%), Gaps = 43/615 (6%)
Query: 437 IECNPLVLKGLER-TARHMVIPY--MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQ 492
I+C+P++ K ++ H+ IP PM+ PP W G + S +R Q
Sbjct: 510 IKCHPIISKLYQQCNLDHLYIPAKECPMVCPPKPWKSVTDGGYLLSTSDFVRVPKEPNSQ 569
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD-------- 544
K QL F+AL+TL NT W VN VL V ++ GG D +D
Sbjct: 570 ILDFKPINSHQLYVTFDALNTLQNTPWIVNKEVLDVALEVFQNGG--DDELDVPSFVTPV 627
Query: 545 RNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
N PL E E + +++ K ++ E + +++ C+ KLS+A ++ F+
Sbjct: 628 NNHNPLNITSEMSQEERFEEYK-KKKSSAMERQNQYALWCEALYKLSLANHYRNR-IFWL 685
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN DFRGR YP+ P+L+H+G DL R +L FA+G+ LG G WLK H+ NL G K
Sbjct: 686 PHNYDFRGRVYPIPPHLSHIGGDLFRSLLIFAKGKPLGPKGFDWLKTHVINL-TGIKKKE 744
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S RL + L +I DSA+KPL G +WW+K+E+P+Q LA C+ + + L+ S+PE ++S
Sbjct: 745 SLADRLKYANEMLPEILDSAEKPLTGNKWWVKSEEPWQTLAACMEIKKVLKHSNPEEYVS 804
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
H PVHQDGSCNGLQHYAALGRD GA +VNL + P DVYS I + + +DA+
Sbjct: 805 HFPVHQDGSCNGLQHYAALGRDYAGAKSVNLTPSQVPQDVYSSIIEIIEEMRAKDAENGL 864
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
+ A+ L + RK+VKQT+MT+VYGVT GA QI ++L E + +L+ A
Sbjct: 865 KI------AQKLEGYIKRKVVKQTIMTTVYGVTRYGAIRQIIKQL-EDIPNFPQKDLWPA 917
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRH 904
+ Y ++ T ++ +MF +A+ I W ECA +I ++ V+W TP+GL V+QPY K G++
Sbjct: 918 ATYLSEKTFLSIQKMFTSAKTIQDWFIECAGVICNQKNFVQWITPIGLLVMQPYGKPGKN 977
Query: 905 TVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
+ E K ++Q+ AFPPNF+HSLD SHM++TA+ C ++ LTFA +HD
Sbjct: 978 PIA----------EPVKPNQRKQKNAFPPNFIHSLDSSHMVLTALHCEQSNLTFASIHDC 1027
Query: 965 YWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPK---------LVFPPLPERG 1015
YWTHAC VDEMN+ R +FV L+ PI ++L D F + K VF +P+ G
Sbjct: 1028 YWTHACTVDEMNKYCRRQFVALHSQPILKDLSDFFVDVYVKDEKKDAEALKVFKRVPQTG 1087
Query: 1016 DFDLREVLGSPYFFN 1030
DFDL V+ S YFF+
Sbjct: 1088 DFDLNSVIDSVYFFS 1102
>gi|195575683|ref|XP_002077706.1| GD22928 [Drosophila simulans]
gi|194189715|gb|EDX03291.1| GD22928 [Drosophila simulans]
Length = 1369
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 293/825 (35%), Positives = 419/825 (50%), Gaps = 89/825 (10%)
Query: 261 YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKT 320
Y Y L A A I + +L L G E V Q +G ++Q +I +
Sbjct: 579 YYTYLKTLDASHFADILIKELYKL-AEGSETFSPTVGQLYKELGQKVQQRYQIEQ----- 632
Query: 321 KKKNETKNKEDEEGDESNTV---TTEQEKLRKKVTDLIKKQK-------LPAVRRIVKGQ 370
KK N T K E + Q+ R+ L+ +Q+ LP V
Sbjct: 633 KKHNGTLEKIGEIYSSYCELWDSGMSQDNTRQAWQRLVHEQRESGPSMDLPEV------- 685
Query: 371 DDFKPWGQDARAKVGSRVIELLTQTAYI------QSPADQLADAPPDIFPAFTHALRTVS 424
PW + VG + +L + I Q + A P ++ PAF R
Sbjct: 686 ----PWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQG 741
Query: 425 KETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLP 480
+ K K + V L L R +R + + +PML PP W+ G +
Sbjct: 742 RFVKEEVKPHPV-------LSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNK 794
Query: 481 SYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL 539
S ++R H A QQ D + + +QL P ++L+ L + WRVN ++L V+ +++ GG
Sbjct: 795 SELIRLPHQAIQQWDRIMASNPQQLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDA 854
Query: 540 ADLVDRNDVPL----------PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
V + L E T + ++++ K+ + +K+ E +S CD +
Sbjct: 855 KLDVPQPPSSLPPLPTLPAKDAEGNATSSADRAKQFRDKLGHRRKQA-EMYSLWCDALYR 913
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
LS+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F + + LG G WL
Sbjct: 914 LSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWL 972
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
K+H NL G + S RL + E + DI DSAD PL GR WW K+++P+Q LA C+
Sbjct: 973 KLHCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCME 1031
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
+ R P ++S P+HQDGSCNGLQHYAALGRD GA +VNL P DVYS +A
Sbjct: 1032 IANVHRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVA 1091
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
A V + DAQ V A+ L V RK++KQTVMT+VYGVT GAR QI R+L
Sbjct: 1092 ALVEKSRKADAQNGLHV------AEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQL 1145
Query: 830 KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTT 888
K+ + ++ AS Y T +L EMF + R I W ECA++I+ +Q V W T
Sbjct: 1146 KDID-DFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVT 1204
Query: 889 PLGLPVVQPY-RKLGRHTVKTSLQILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMM 945
PLGLPVVQPY R+ +H+ ++ ++ E+ + +Q+ AFPPNF+HSLD SHMM
Sbjct: 1205 PLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDMYERPNILKQKNAFPPNFIHSLDSSHMM 1264
Query: 946 MTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP- 1004
+T++ C + G+TF VHD +WTHA V E+NR+ RE+FV L+ PI E L + + ++
Sbjct: 1265 LTSLHCERQGITFVSVHDCFWTHANSVPELNRMCREQFVALHSQPILEQLSEFMRHTYSF 1324
Query: 1005 -------------------KLVFPPLPERGDFDLREVLGSPYFFN 1030
LP++GDFDLR VL S YFF+
Sbjct: 1325 KDSDFINDGSVEDLSKRQLNRTLKQLPQKGDFDLRNVLDSVYFFS 1369
>gi|20129143|ref|NP_608565.1| mitochondrial RNA polymerase, isoform A [Drosophila melanogaster]
gi|442625108|ref|NP_001259853.1| mitochondrial RNA polymerase, isoform B [Drosophila melanogaster]
gi|7296127|gb|AAF51421.1| mitochondrial RNA polymerase, isoform A [Drosophila melanogaster]
gi|40882523|gb|AAR96173.1| LD36213p [Drosophila melanogaster]
gi|440213109|gb|AGB92390.1| mitochondrial RNA polymerase, isoform B [Drosophila melanogaster]
Length = 1369
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 309/906 (34%), Positives = 455/906 (50%), Gaps = 92/906 (10%)
Query: 182 RGMGSGKYRMLKMRQVKIETEA--WEKAANEYRELL-MDMCEQKLAPNLPYMKSLFLGWF 238
RG + + L Q+KIE + K+ + +E + C + L K L W
Sbjct: 499 RGYTAAQLEQLAREQLKIELDGSITIKSIEKSKEFANSEKCRELL-------KELEDTWR 551
Query: 239 EPLRDAIAKE----QERCRMAKHK-VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
+ + AI ++ + + R H + Y Y L A A I + +L L G E
Sbjct: 552 KQISAAIVRDLNTLRAQVRFKPHGFMNYYTYLKTLDASHFADILIKELYKL-AEGSETFS 610
Query: 294 ARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTV---TTEQEKLRKK 350
V Q +G ++Q +I + KK N T K E + Q+ R+
Sbjct: 611 PTVGQLYKELGQKVQQRYQIEQ-----KKHNGTLEKIGEIYSSYCELWGSGMSQDNTRQA 665
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFK-PWGQDARAKVGSRVIELLTQTAYI------QSPAD 403
L+ +Q R D + PW + VG + +L + I Q
Sbjct: 666 WQRLVYEQ-----RESGPSMDLLEVPWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKS 720
Query: 404 QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----M 459
+ A P ++ PAF R + K K + V L L R +R + + +
Sbjct: 721 KAAAQPQNLLPAFYTLFRNQGRFVKEEVKPHPV-------LSRLFRASRQQTLTFDSNLV 773
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
PML PP W+ G + + ++R H A QQ D + + + L P ++L+ L +
Sbjct: 774 PMLCPPQPWSTPHNGGYLLNKTELIRLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVP 833
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL----------PEKPETEDEAQLRKWQWK 568
WRVN ++L V+ +++ GG + V + L E T E + ++++ K
Sbjct: 834 WRVNTQLLDVIIKVFQNGGDVKLDVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDK 893
Query: 569 VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDL 628
+ + +K+ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL
Sbjct: 894 LGHRRKQA-EMYSLWCDALYRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDL 951
Query: 629 CRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
R +L F + + LG GL WLK+H NL G + S RL + E + DI DSAD PL
Sbjct: 952 ARSMLIFDQAQPLGVDGLSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPL 1010
Query: 689 EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
GR WW K+++P+Q LA C+ + R P ++S P+HQDGSCNGLQHYAALGRD
Sbjct: 1011 TGRMWWSKSDEPWQTLACCMEIANVHRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEA 1070
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808
GA +VNL P DVYS +AA V + DAQ V A+ L V RK++KQT
Sbjct: 1071 GARSVNLAPSAIPQDVYSAVAALVEKSRKADAQNGLHV------AEALAGFVRRKVIKQT 1124
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
VMT+VYGVT GAR QI R+LK+ + ++ AS Y T +L EMF + R I
Sbjct: 1125 VMTTVYGVTRYGARLQIARQLKDID-DFPKDWVWPASTYLTTKTFESLREMFTSTREIQD 1183
Query: 869 WLGECAKIIASE-NQPVRWTTPLGLPVVQPY-RKLGRHTVKTSLQILTLQRET--EKVMV 924
W ECA++I+ +Q V W TPLGLPVVQPY R+ +H+ ++ ++ E+ +
Sbjct: 1184 WFTECARLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNI 1243
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
+Q+ AFPPNF+HSLD SHMM+T++ C + G+TF VHD +WTHA V E+NR+ RE+FV
Sbjct: 1244 LKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRMCREQFV 1303
Query: 985 ELYEMPIFENLLDSFQKSFP--------------------KLVFPPLPERGDFDLREVLG 1024
L+ PI E L + + ++ + +P++GDFDLR VL
Sbjct: 1304 ALHSQPILEQLSEFMRHTYSFKDSDFINDGSVEDLSKRQLNRILKQMPQKGDFDLRNVLD 1363
Query: 1025 SPYFFN 1030
S YFF+
Sbjct: 1364 SVYFFS 1369
>gi|195470409|ref|XP_002087499.1| GE15788 [Drosophila yakuba]
gi|194173600|gb|EDW87211.1| GE15788 [Drosophila yakuba]
Length = 1366
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 312/912 (34%), Positives = 452/912 (49%), Gaps = 104/912 (11%)
Query: 182 RGMGSGKYRMLKMRQVKIETEA--WEKAANEYRELL-MDMCEQKLAPNLPYMKSLFLGWF 238
RG + + L Q+KIE + K+ + +E + C ++L + L W
Sbjct: 496 RGYTTAQLEQLAREQLKIELDGSITIKSIEKSKEFANSEKCRERL-------RELEDTWR 548
Query: 239 EPLRDAIAKE----QERCRMAKHK-VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
+ + AI ++ + + R H + Y Y L A A I + +L L G E
Sbjct: 549 KQISAAIVRDLNTLRAQVRFKPHGFMNYYTYLKTLDASHFADILIKELYKL-AEGSETFS 607
Query: 294 ARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD---ESNTVTTEQEKLRKK 350
V Q +G ++Q +I + KK N T K E E Q+ R+
Sbjct: 608 PTVGQLYKELGQKVQQRYQIEQ-----KKHNGTLEKVGEIYSSYCELWDSGMSQDNSRQA 662
Query: 351 VTDLIKKQK-------LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI----- 398
L+ +Q+ LP V PW + VG + +L + I
Sbjct: 663 WQRLVHEQRESGPSMDLPEV-----------PWPSNVLTGVGRFLYNILMRDIKIDAHIM 711
Query: 399 -QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP 457
Q + A P ++ PAF R + K K + V L L R +R +
Sbjct: 712 RQKSKAKAATQPQNLLPAFYTLFRNQGRFVKEEVKPHPV-------LSRLFRASRQQTLT 764
Query: 458 Y----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALD 512
+ +PML PP W+ G + S ++R H A QQ D + + + L P ++L+
Sbjct: 765 FDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAIQQWDRITASNPQHLYPALDSLN 824
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL----------PEKPETEDEAQL 562
L + WRVN ++L V+ ++ GG V + L E T +
Sbjct: 825 QLASVPWRVNTQLLDVIIGVFQNGGDAKLDVPQPPSSLPPLPMLPAKDAEGNATSSADRA 884
Query: 563 RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622
++++ K+ + +K+ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P+LN
Sbjct: 885 KEFRDKLGHRRKQA-EMYSLWCDALYRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLN 942
Query: 623 HLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFD 682
HLGSDL R +L F + + LG G WLK+H NL G + S RL + E + DI D
Sbjct: 943 HLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPDILD 1001
Query: 683 SADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
SAD PL GR WW K+++P+Q LA C+ + RS P ++S P+HQDGSCNGLQHYAA
Sbjct: 1002 SADNPLTGRMWWAKSDEPWQTLACCMEIANVHRSPDPAAYLSRFPIHQDGSCNGLQHYAA 1061
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDR 802
LGRD GA +VNL P DVYS +AA V + DAQ V A L V R
Sbjct: 1062 LGRDEAGARSVNLAPSAIPQDVYSAVAALVEKSRKTDAQNGLHV------ADALAGFVRR 1115
Query: 803 KLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQA 862
K++KQTVMT+VYGVT GAR QI R+LK+ + ++ AS Y T +L EMF +
Sbjct: 1116 KVIKQTVMTTVYGVTRYGARLQIARQLKDID-DFPKDWVWPASTYLTTKTFESLREMFTS 1174
Query: 863 ARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPY-RKLGRHTVKTSLQILT--LQRE 918
R I W ECA++I+ +Q V W TPLGLPVVQPY R+ +H+ +T ++
Sbjct: 1175 TREIQDWFTECARLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRTGFKVSANMPMDM 1234
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
E+ + +Q+ AFPPNF+HSLD SHMM+T++ C + G+TF VHD +WTHA V E+NR+
Sbjct: 1235 YERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRM 1294
Query: 979 LREKFVELYEMPIFENLLDSFQKSFP--------------------KLVFPPLPERGDFD 1018
RE+FV L+ PI E L ++++ LP++GDFD
Sbjct: 1295 CREQFVALHSQPILEQLSAYMRQTYSFKDNDFTNDGSVEDLSKRQLNRTLKQLPQKGDFD 1354
Query: 1019 LREVLGSPYFFN 1030
LR VL S YFF+
Sbjct: 1355 LRNVLDSVYFFS 1366
>gi|195118034|ref|XP_002003545.1| GI21974 [Drosophila mojavensis]
gi|193914120|gb|EDW12987.1| GI21974 [Drosophila mojavensis]
Length = 1366
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 270/703 (38%), Positives = 385/703 (54%), Gaps = 64/703 (9%)
Query: 375 PWGQDARAKVGSRVIELLTQT----AYIQSPADQLADA-----PPDIFPAFTHALRTVSK 425
PW + + VG + +L + A+I + A P ++ PAF R +
Sbjct: 681 PWPNNVLSGVGRFLYNILMRDIKIDAHIMRQRSNKSKATGTTMPQNMLPAFYTLFRNQGR 740
Query: 426 ETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPS 481
K K + V L L R +R + + +PML PP W+ G + S
Sbjct: 741 LVKEEVKPHPV-------LSRLLRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKS 793
Query: 482 YVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLA 540
++R H A QQ + + + + L P ++L+ L + WRVN ++L V+ +++ GG
Sbjct: 794 ELIRLPHQAVQQWERIHASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDAK 853
Query: 541 DLVDRNDVPLPEKPET---EDEAQL----RKWQWKVR-NVKKENRERHSQRCDIELKLSV 592
V + LP P ED + + R Q++ + +++ E +S CD +LS+
Sbjct: 854 LDVPQPPSSLPPLPTLPVGEDGSGVSPADRAKQFRDKLGHRRKQAEMYSLWCDALYRLSL 913
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F + + LG G WLK+H
Sbjct: 914 AQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLH 972
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
NL G + S RL + E + DI DSAD PL GR WW K+++P+Q LA C+ +
Sbjct: 973 CINL-TGIKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIAN 1031
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
RS P ++S P+HQDGSCNGLQHYAALGRD GA +VNL P DVYS +AA V
Sbjct: 1032 VYRSPDPAAYMSRFPIHQDGSCNGLQHYAALGRDQAGACSVNLAPSPIPQDVYSSVAALV 1091
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
+ DA+ V A+ L V RK++KQTVMT+VYGVT GAR QI R+LK+
Sbjct: 1092 ERTRKTDAENGLHV------AQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDI 1145
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLG 891
+ ++ AS Y T +L EMF + R I W ECA++IA +Q V W TPLG
Sbjct: 1146 D-DFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLIAGVCSQNVEWVTPLG 1204
Query: 892 LPVVQPY-RKLGRHTVKTSLQI---LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
LPVVQPY R+ +H L++ +++ E+ + +Q+ AFPPNF+HSLD SHMM+T
Sbjct: 1205 LPVVQPYNRQEMKHPQSKGLRVNAHMSMDM-YERPNILKQKNAFPPNFIHSLDSSHMMLT 1263
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP--- 1004
++ C + G+TF VHD +WTHAC V E+NRI RE+FV L+ PI E L + +K++
Sbjct: 1264 SLHCERKGITFVSVHDCFWTHACTVPELNRICREQFVALHSQPILEQLSEFMKKTYSFSN 1323
Query: 1005 -----------------KLVFPPLPERGDFDLREVLGSPYFFN 1030
+ LP++GDFDLR VL S YFF+
Sbjct: 1324 AELTNDGSVEDLSKRQLNRILRQLPQKGDFDLRNVLDSVYFFS 1366
>gi|195388547|ref|XP_002052941.1| GJ17831 [Drosophila virilis]
gi|194149398|gb|EDW65096.1| GJ17831 [Drosophila virilis]
Length = 1374
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/709 (37%), Positives = 375/709 (52%), Gaps = 76/709 (10%)
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQS--------PADQLADAPPDIFPAFTHALRTVSKE 426
PW + A VG + +L + I + P ++ PAF R +
Sbjct: 689 PWPTNVLAGVGRFLYNILMRDIKIDAHIMRQKSKTKTTATTTPQNLLPAFYTLFRNQGRL 748
Query: 427 TKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSY 482
K K + V L L R +R + + +PML PP W+ G + S
Sbjct: 749 VKEEVKPHPV-------LSRLLRASRQQTLTFDSNLVPMLCPPQPWSTPQNGGYLLNKSE 801
Query: 483 VMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD 541
++R H A QQ + ++ + L P ++L+ L + WRVN ++L V+ ++ GG
Sbjct: 802 LIRLPHQAVQQWERIRAANPQHLYPALDSLNQLASVPWRVNTQLLDVIIEVFQKGGDA-- 859
Query: 542 LVDRNDVP-------------LPEKPETEDEAQLRKWQWKVR-NVKKENRERHSQRCDIE 587
+ DVP EK + R ++ + ++ E +S CD
Sbjct: 860 ---KLDVPQPPSSLPPLPTLPTGEKDGSSVSPAERAKLFRDKLGHRRRQAEMYSLWCDAL 916
Query: 588 LKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH 647
+LS+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F + + LG G
Sbjct: 917 YRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFS 975
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC 707
WLK+H NL G + S RL + E + +I DSAD PL GR WW K+++P+Q LA C
Sbjct: 976 WLKLHCINL-TGTKKRDSVRERLLYAEEIMPEILDSADNPLTGRMWWAKSDEPWQTLACC 1034
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
+ + + RS P ++S P+HQDGSCNGLQHYAALGRD GA +VNL P DVYS
Sbjct: 1035 MEIAKVQRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGACSVNLAPSAIPQDVYSA 1094
Query: 768 IAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR 827
+AA V + DAQ V A+ L V RK++KQTVMT+VYGVT GAR QI R
Sbjct: 1095 VAALVERSRKTDAQNGLHV------AQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIAR 1148
Query: 828 RLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRW 886
+LK+ + ++ AS Y T +L EMF + R I W ECA++IA +Q V W
Sbjct: 1149 QLKDID-DFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLIAGVCSQNVEW 1207
Query: 887 TTPLGLPVVQPYRK-----LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDG 941
TPLGLPVVQPY + + RH ++ + E ++ +Q+ AFPPNF+HSLD
Sbjct: 1208 VTPLGLPVVQPYNRQELKPVARHGLRVISNMPMDMYERPNIL--KQKNAFPPNFIHSLDS 1265
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
SHMM+T++ C + G+TF VHD +WTHAC V E+NR RE+FV L+ PI E L + +K
Sbjct: 1266 SHMMLTSLHCERQGITFVSVHDCFWTHACTVPELNRACREQFVALHSQPILEQLSEFMRK 1325
Query: 1002 SFP--------------------KLVFPPLPERGDFDLREVLGSPYFFN 1030
++ + LP++GDFDLR+VL S YFF+
Sbjct: 1326 TYSFRDNDFTNDGSVEDLSKRQLNRILRQLPQKGDFDLRQVLDSVYFFS 1374
>gi|391337783|ref|XP_003743244.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Metaseiulus occidentalis]
Length = 1172
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/605 (40%), Positives = 347/605 (57%), Gaps = 48/605 (7%)
Query: 458 YMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
++PML PP WT K F + P + + Q + P + + P +AL+ L
Sbjct: 584 FLPMLCPPKPWTR-PKDTPFLISGVPLIRVMPDVGEHQMCAINDVPPENIYPALDALNVL 642
Query: 515 GNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRNDVPLPE----KPETEDEAQLRKWQWK 568
T WRVN VL VL ++ G +L+ D + P+ + +++ A+ R Q++
Sbjct: 643 SRTPWRVNVPVLDVLTTVFLGEGDKKLSVPKDPAKMVQPDIAAIRAQSKSAARTRAMQFR 702
Query: 569 VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDL 628
+E E S CD+ KLS+A K + F++PHN+DFRGR YP P+ +HLG D+
Sbjct: 703 -----REKAENFSLWCDMLYKLSIAHHFK-HDVFFFPHNMDFRGRVYPCPPHFHHLGGDV 756
Query: 629 CRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
RG+L FAEG+ LG+ GL WLK+HL NL G + E R+AF + +D+I DSA PL
Sbjct: 757 IRGLLLFAEGKPLGEKGLWWLKLHLINL-TGFKKRRPIEERVAFADEIMDEILDSAQNPL 815
Query: 689 EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
GR+WW ++DP+Q LA C + AL S PE +I H+P+HQDGSCNGLQHYAALGRD
Sbjct: 816 TGRKWWQTSDDPWQTLAACKEIANALASPEPEKYICHLPIHQDGSCNGLQHYAALGRDLE 875
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808
GA VNLV + P DVYSGIA V + Q D+ + A +L + RK+VKQT
Sbjct: 876 GALQVNLVPMDAPQDVYSGIADTVESLRQIDSANGVEI------ATILEGHIKRKVVKQT 929
Query: 809 VMTSVYGVTYIGARDQIKRRLKE-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIM 867
VMT VYGVT GA QI R+L++ G P A A+ Y T +L +MF A R I
Sbjct: 930 VMTVVYGVTRFGAHLQILRQLQDLEGFPSTRAN--SAAHYLVGKTFESLEKMFSATREIQ 987
Query: 868 SWLGECAKIIA-SENQPVRWTTPLGLPVVQPY--RKLGRHTVKTSLQILTLQRETEKVMV 924
+W CA+ I + ++PV+WTTPLGLPVVQPY R V++ ++ + K
Sbjct: 988 NWFTRCARTICFATDRPVQWTTPLGLPVVQPYFLTSTQRCVVESDRGKHSIVTQNSKPHG 1047
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
+Q+ FPPN++HSLD SHMM+TA+ C AG+ F VHD +WTH VDEM+RI RE+FV
Sbjct: 1048 MKQKNGFPPNYIHSLDSSHMMLTAMYCEAAGINFVSVHDCFWTHVSTVDEMSRICREQFV 1107
Query: 985 ELYEMPIFENLLDSFQKSFP-------------------KLVFPPLPERGDFDLREVLGS 1025
L+ P+ E L D F++++ + + +P++G++DL+ VL S
Sbjct: 1108 SLHSEPLLERLSDEFRRAYIHGKTHKIPDQAKAAAFRELQTLVEAIPDKGEYDLKSVLKS 1167
Query: 1026 PYFFN 1030
YFF+
Sbjct: 1168 RYFFS 1172
>gi|198475283|ref|XP_001356998.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
gi|198138752|gb|EAL34064.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
Length = 1363
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 309/914 (33%), Positives = 449/914 (49%), Gaps = 110/914 (12%)
Query: 182 RGMGSGKYRMLKMRQVKIETEAWE--KAANEYRELL-MDMCEQKLAPNLPYMKSLFLGWF 238
RG K L Q+K+E + K+ + +E D C ++L K L W
Sbjct: 495 RGYSKAKLEQLARDQLKVELDGCITIKSIEKTKEFANADKCRERL-------KELEQSWR 547
Query: 239 EPLRDAIAKE----QERCRMAKHK-VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
+ + AI ++ + + R H + Y Y L A I + +L L G E
Sbjct: 548 KQISTAIVRDLNTLRAQVRFKPHGYMNYYTYLKSLDTAHFADILIKELYKL-GEGSETFS 606
Query: 294 ARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDE-------EGDESNTVTTEQEK 346
V Q +G+ ++Q +I + KK N T K E D NT Q+
Sbjct: 607 PTVGQLYKELGEKVQQRYQIEQ-----KKHNGTLEKVGEIYSSYCDLWDSGNT----QDN 657
Query: 347 LRKKVTDLIKKQK-------LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI- 398
R+ L+ +Q+ LP V PW + A VG + +L + I
Sbjct: 658 ARQAWQRLVHEQRESGPSMDLPEV-----------PWPSNVLAGVGRFLYNILMRDIKID 706
Query: 399 ----QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHM 454
+ + + ++ PAF R + K K + V L L R +R
Sbjct: 707 PHIMRQKSKSKTTSSQNLLPAFYTLFRNQGRLVKEEVKPHPV-------LSRLLRGSRQQ 759
Query: 455 VIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFE 509
+ + +PML PP W+ G + S ++R H A QQ + ++ + + L P +
Sbjct: 760 TLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAIQQWERIRASNPQHLYPALD 819
Query: 510 ALDTLGNTKWRVNNRVLSVLDRIWSCGG--------RLADLVDRNDVPLPEKPETEDEAQ 561
+L+ L + WRVN ++L V+ ++ GG L + + A
Sbjct: 820 SLNQLASVPWRVNTQLLDVIIEVFQNGGDAKLDVPQPPTSLPPLPTILKNSEGSGVSNAD 879
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
L K + +++ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P+L
Sbjct: 880 LAKQFREKLGHRRKKAEMYSLWCDALYRLSLAQHYRDKV-FWLPHNMDFRGRVYPVPPHL 938
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
NHLGSDL R +L F + + LG G WLK+H NL G + S RL + E + +I
Sbjct: 939 NHLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPEIL 997
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
DSAD PL G WW K++ P+Q L C+ + RS P ++S P+HQDGSCNGLQHYA
Sbjct: 998 DSADNPLTGGMWWAKSDAPWQTLGCCMEIANVHRSPDPAAYMSRFPIHQDGSCNGLQHYA 1057
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVD 801
ALGRD GA +VNL P DVYS +A V + DAQ V A+ L V
Sbjct: 1058 ALGRDKAGAYSVNLAPSPIPQDVYSAVATLVERGRKADAQNGLHV------AEALAGFVR 1111
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQ 861
RK++KQTVMT+VYGVT GAR QI R+LK+ + ++ AS Y T +L EMF
Sbjct: 1112 RKVIKQTVMTTVYGVTRYGARLQIARQLKDID-DFPKDWVWPASTYLTTKTFESLREMFT 1170
Query: 862 AARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPY-RKLGRHTVKTSLQI---LTLQ 916
+ R I W ECA++I+ +Q V W TPLGLPVVQPY R+ +HT +T L++ +++
Sbjct: 1171 STREIQDWFTECARLISGVCSQNVEWITPLGLPVVQPYNRQEIKHTSRTGLRVNANMSMD 1230
Query: 917 RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMN 976
E+ + +Q+ AFPPNF+HSLD SHMM+T++ C + G+TF VHD +WTHAC V E+N
Sbjct: 1231 M-YERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERKGITFVSVHDCFWTHACTVPELN 1289
Query: 977 RILREKFVELYEMPIFENLLDSFQKSFP--------------------KLVFPPLPERGD 1016
R RE+FV L+ PI E L D + ++ LP++GD
Sbjct: 1290 RSCREQFVALHSQPILEQLSDFMRNTYSFKDNDFTNDGSVEDLSKRQLNRTLKQLPQKGD 1349
Query: 1017 FDLREVLGSPYFFN 1030
F+LR VL S YFF+
Sbjct: 1350 FELRNVLDSIYFFS 1363
>gi|307191463|gb|EFN75004.1| DNA-directed RNA polymerase, mitochondrial [Camponotus floridanus]
Length = 1223
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 252/599 (42%), Positives = 343/599 (57%), Gaps = 51/599 (8%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+P PP W D G + F + +R ++ TP KQL P F+ L+ LG+
Sbjct: 649 LPTCSPPRPWIDIDTGGYLFSKTSFIR-DPYMTPTILLRNTPMKQLYPAFDCLNQLGSIP 707
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVP--------LPEKPETEDEAQLRKWQWKVR 570
WR+N +L +L +I+ GG ++ DVP L E + D + +K + +
Sbjct: 708 WRINVPMLDILIKIFREGGS-----EKLDVPQSPSSLPSLSELITSSDIDKSKKMKLAFQ 762
Query: 571 NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
+K+N E ++ CD KLSVA +D+ F+ PHN+DFRGRAYP+ P+L HL SDL R
Sbjct: 763 LRRKKN-EMYALWCDSLYKLSVANHFRDK-VFWLPHNLDFRGRAYPVPPHLTHLASDLSR 820
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
IL FA+G+ LG GL WLKIH NL G K S + RL F LD I DSA PL G
Sbjct: 821 SILLFAQGKPLGPKGLDWLKIHTINL-TGMKKKESIDQRLKFANEILDLIVDSARNPLTG 879
Query: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
WW K+++P+Q LA C + AL+S E +I +P+HQDGSCNGLQHYAALGRD +GA
Sbjct: 880 EMWWTKSDEPWQTLAACKEIDNALQSPDVEKYICRLPIHQDGSCNGLQHYAALGRDQIGA 939
Query: 751 AAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
+VNL P DVYS +A V + DA+ V AK L V RK++KQTVM
Sbjct: 940 ESVNLYPSNTPQDVYSVVANMVDEYRKIDAEAGDKV------AKALEGFVTRKVIKQTVM 993
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
T+VYGVT G R QI R+L + + + S Y + T +L MF A+ I W
Sbjct: 994 TTVYGVTKFGGRLQIARQLSDLKE-FNQDYTWSGSLYLVEKTFQSLRTMFTGAKEIQDWF 1052
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
+CA++I++ NQ V+W TPLGLPV+QPY K VK++ Q + K +Q+
Sbjct: 1053 TDCARVISTRCNQYVQWVTPLGLPVLQPYFK----RVKSANQ----NKLVRKPDTMKQKN 1104
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
AFPPNF+HSLD SHMM+T++ C +AG+TF VHD +WTHAC VD MNRI RE+F+ L+
Sbjct: 1105 AFPPNFIHSLDSSHMMLTSLYCEQAGITFMSVHDCFWTHACTVDIMNRICREQFIALHRE 1164
Query: 990 PIFEN----LLDSFQKSFPK--------------LVFPPLPERGDFDLREVLGSPYFFN 1030
PI E+ L D + K F +F LP++G+F++++V S YFF+
Sbjct: 1165 PILEDLSQFLFDRYAKYFTSNQRLLRQRDNDISMEIFKKLPKKGNFEIKKVQSSQYFFS 1223
>gi|195350263|ref|XP_002041660.1| GM16628 [Drosophila sechellia]
gi|194123433|gb|EDW45476.1| GM16628 [Drosophila sechellia]
Length = 1364
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 308/912 (33%), Positives = 453/912 (49%), Gaps = 104/912 (11%)
Query: 182 RGMGSGKYRMLKMRQVKIETEA--WEKAANEYRELL-MDMCEQKLAPNLPYMKSLFLGWF 238
RG + + L Q++IE + K+ + +E + C ++L + L W
Sbjct: 494 RGYTTAQLEQLAREQLRIELDGSITIKSIEKSKEFANSEKCRERL-------RELEDTWR 546
Query: 239 EPLRDAIAKE----QERCRMAKHK-VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
+ + AI ++ + + R H + Y Y L A A I + +L L G E
Sbjct: 547 KQILAAIVRDLNTLRAQVRFKPHGFMNYYTYLKTLDASHFADILIKELYKL-AEGSETFS 605
Query: 294 ARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTV---TTEQEKLRKK 350
V Q +G ++Q +I + KK N T K E + Q+ R+
Sbjct: 606 PTVGQLYKELGQKVQQRYQIEQ-----KKHNGTLEKIGEIYSSYCELWDSGMSQDNTRQA 660
Query: 351 VTDLIKKQK-------LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI----- 398
L+ +Q+ LP V PW + VG + +L + I
Sbjct: 661 WQRLVHEQRESGPSMDLPEV-----------PWPSNVLTGVGRFLYNILMRDIKIDAHIM 709
Query: 399 -QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP 457
Q + A P ++ PAF R + K K + V L L R +R +
Sbjct: 710 RQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKEEVKPHPV-------LSRLFRASRQQTLT 762
Query: 458 Y----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALD 512
+ +PML PP W+ G + S ++R H A QQ D + + + L P ++L+
Sbjct: 763 FDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAIQQWDRIMASNPQHLYPGLDSLN 822
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL----------PEKPETEDEAQL 562
L + WRVN ++L V+ +++ GG V + L E T +
Sbjct: 823 QLASVPWRVNTQLLDVIIKVFQNGGDAKLDVPQPPSSLPPLPTLPAKDAEGNATSSADRA 882
Query: 563 RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622
++++ K+ + +K+ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P+LN
Sbjct: 883 KQFRDKLGHRRKQA-EMYSLWCDALYRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLN 940
Query: 623 HLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFD 682
HLGSDL R +L F + + LG G WLK+H NL G + S RL + E + DI D
Sbjct: 941 HLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPDILD 999
Query: 683 SADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
SAD PL GR WW K+++P+Q LA C+ + R P ++S P+HQDGSCNGLQHYAA
Sbjct: 1000 SADNPLTGRMWWSKSDEPWQTLACCMEIANVHRCPDPAAYLSRFPIHQDGSCNGLQHYAA 1059
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDR 802
LGRD GA +VNL P DVYS +AA V + DAQ V A+ L V R
Sbjct: 1060 LGRDEAGARSVNLAPSAIPQDVYSAVAALVEKSRKADAQNGLHV------AEALAGFVRR 1113
Query: 803 KLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQA 862
K++KQTVMT+VYGVT GAR QI R+LK+ + ++ AS Y T +L EMF +
Sbjct: 1114 KVIKQTVMTTVYGVTRYGARLQIARQLKDID-DFPKDWVWPASTYLTTKTFESLREMFTS 1172
Query: 863 ARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPY-RKLGRHTVKTSLQILT--LQRE 918
R I W ECA++I+ +Q V W TPLGLPVVQPY R+ +H+ ++ ++
Sbjct: 1173 TREIQDWFTECARLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDM 1232
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
E+ + +Q+ AFPPNF+HSLD SHMM+T++ C + G+TF VHD +WTHA V E+NR+
Sbjct: 1233 YERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERHGITFVSVHDCFWTHANSVPELNRM 1292
Query: 979 LREKFVELYEMPIFENLLDSFQKSFP--------------------KLVFPPLPERGDFD 1018
RE+FV L+ PI E L + + ++ LP++GDFD
Sbjct: 1293 CREQFVALHSQPILEQLSEFMRHTYSFKDSDFINDGSVEDLSKRQLNRTLKQLPQKGDFD 1352
Query: 1019 LREVLGSPYFFN 1030
LR VL S YFF+
Sbjct: 1353 LRNVLDSVYFFS 1364
>gi|170029524|ref|XP_001842642.1| DNA-directed RNA polymerase, mitochondrial [Culex quinquefasciatus]
gi|167863226|gb|EDS26609.1| DNA-directed RNA polymerase, mitochondrial [Culex quinquefasciatus]
Length = 1308
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/690 (37%), Positives = 375/690 (54%), Gaps = 52/690 (7%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W + A VG + +L I A + PAF R +K K K +
Sbjct: 636 WPRAAVNGVGKFLYNVLKNDLKINVNATARGSRQVKLVPAFYSLFRYEAKVAKEQIKPHP 695
Query: 436 VIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRD 494
V+ + + ++ + I +PML PP W+ G + S ++R A QQ +
Sbjct: 696 VL---IKLYRNSQQDSLKFDINLVPMLCPPQPWSTAVNGGYILAKSDLIRLPQQAHQQSE 752
Query: 495 TVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP 554
+ + + P +AL+ LG+ W++N+ VL V+ +++ GG + DVP P
Sbjct: 753 RIAEASPQDMYPTLDALNQLGSIPWKINDEVLDVVLAVFNKGGN-----SKLDVPEPPAS 807
Query: 555 ETEDEAQLRKWQW----------KVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
E + + + K +++ + +S CD +LS+A + + F+
Sbjct: 808 LAPIEETIPRNEMTGYDRFNLMRKKMTHRRKQGDMYSLWCDALYRLSLANHFRGKV-FWL 866
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
P N+DFRGR YP+ P+LNHLG DL R ++ F + + LG G +WLK+H NL G +
Sbjct: 867 PQNIDFRGRVYPIPPHLNHLGHDLARCLMVFHQKKPLGPDGFNWLKLHCINL-TGLKKRD 925
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S + RL + + +DDI DSAD+PL GR WW +++P+Q LA C+ + + R +P F+S
Sbjct: 926 SVQDRLRYADEIMDDILDSADRPLTGRMWWSHSDEPWQTLACCMEIAKVHRCPNPAKFMS 985
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
P+HQDGSCNGLQHYAALGRDT GA +VNL + P DVYS +A V+++ + +D
Sbjct: 986 GFPIHQDGSCNGLQHYAALGRDTPGAISVNLAPADVPQDVYSAVA----VLVEENRAKDA 1041
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
A + A +L + RK++KQTVMT+VYGVT GAR QI R+L E + ++ A
Sbjct: 1042 A--NNVKVAAILEGFIKRKVIKQTVMTTVYGVTRYGARKQIARQL-EYIDEFPKEWVWPA 1098
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGR 903
S Y T AL EMF +A+ I W +CA++I++ Q V W TPLGLPVVQPY + R
Sbjct: 1099 SSYLTVKTFNALSEMFTSAKEIQDWFTDCARLISAVCAQNVEWITPLGLPVVQPYNRSDR 1158
Query: 904 HTVKT-SLQILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG 960
+ + S+QI EK + +Q+ AFPPNFVHSLD SHMM+T++ C +AGLTF
Sbjct: 1159 PAIPSKSIQIPEHFAMDSYEKPNIMKQKNAFPPNFVHSLDSSHMMLTSLYCERAGLTFIS 1218
Query: 961 VHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP---------------- 1004
VHD YWTHAC V MN+I RE+FV L+ PI E+L + +
Sbjct: 1219 VHDCYWTHACTVATMNKICREQFVALHSEPILEDLSKFLVQKYSYDENEITNDGSVIDLT 1278
Query: 1005 --KL--VFPPLPERGDFDLREVLGSPYFFN 1030
KL + P++GDFDLR VL S YFF+
Sbjct: 1279 KRKLNRILQQYPDKGDFDLRRVLNSVYFFS 1308
>gi|89148152|gb|ABD62818.1| mitochondrial single-subunit RNA polymerase [Liceales sp. orange
ball]
Length = 392
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/398 (54%), Positives = 273/398 (68%), Gaps = 12/398 (3%)
Query: 570 RNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
R V++ N + HS CD KL VA KM D FY PHNVDFRGRAYP+ P+LN LGSDLC
Sbjct: 4 RKVRQLNNDLHSLWCDATYKLDVAAKMMDHT-FYLPHNVDFRGRAYPLPPHLNQLGSDLC 62
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
RG+L + LG GL WLK+HLANLY GVDK+ E R+AF + ++D++ D+ D PL
Sbjct: 63 RGLLLLDTAKPLGPRGLWWLKVHLANLY--GVDKVPFEARVAFVDKNIDNVMDAGDNPLG 120
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
GR WWLKA+DP+QCLA C LT A+RS PE F S IPVHQDGSCNGLQHYAALG D +G
Sbjct: 121 GRMWWLKADDPWQCLATCTELTAAIRSGDPENFKSRIPVHQDGSCNGLQHYAALGGDEIG 180
Query: 750 AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTV 809
A VNL+ + P DVY+G+A V I DA+ + KLL +VDRK+VKQTV
Sbjct: 181 ARKVNLIPSDSPQDVYAGVATLVAKRIHDDAEAGHEL------GKLLDGKVDRKVVKQTV 234
Query: 810 MTSVYGVTYIGARDQIKRRLKERGAPM-EEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
MTSVYGVTYIGAR QI L+++ ++ +L+ AS Y T +L +MF AR IM
Sbjct: 235 MTSVYGVTYIGARLQIHNALQDKEIDWRDDDQLYHASAYVTNHTFESLNQMFLGARNIMK 294
Query: 869 WLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK--R 926
WL +CA+I+A + +PV W TPLGLP+VQPY K G + VKT +Q + L + + + V +
Sbjct: 295 WLADCARIVAKQKEPVAWVTPLGLPIVQPYVKTGNYQVKTVVQSVVLSEDGKDMPVNTMK 354
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
QR+AFPPN+VHSLD SHMM+TA+ C + G+ +A VHDS
Sbjct: 355 QRSAFPPNYVHSLDSSHMMLTAIECARRGIDYASVHDS 392
>gi|195051970|ref|XP_001993208.1| GH13202 [Drosophila grimshawi]
gi|193900267|gb|EDV99133.1| GH13202 [Drosophila grimshawi]
Length = 1379
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 305/916 (33%), Positives = 442/916 (48%), Gaps = 108/916 (11%)
Query: 182 RGMGSGKYRMLKMRQVKIETEAWE--KAANEYRELL-MDMCEQKLAPNLPYMKSLFLGWF 238
RG + L Q+++E + + K+ + +E + C KL K L GW
Sbjct: 505 RGYSKTQLEQLAREQLQVELDGYITIKSIEKTKEFANAEYCRSKL-------KELEQGWR 557
Query: 239 EPLRDAIAKE----QERCRMAKHK-VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
+ + AI ++ + + R H + Y Y L A I + +L L G E
Sbjct: 558 KQISAAIVRDLNTLRAQVRFKPHGYMNYYTYLKVLDTTQFADILIKELYKL-AEGSETFS 616
Query: 294 ARVVQAACIIGDAIEQEVRIHK-----FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLR 348
V Q +G ++Q +I + LEK + + E D T ++ +
Sbjct: 617 PTVSQLYKELGQKVQQCYQIEQKKHNGILEKI---GDIYSAYCELWDSGRTTDNTRQMWQ 673
Query: 349 KKVTDLIKK---QKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI------- 398
+ V D LP V PW + A VG + +L + I
Sbjct: 674 RLVHDERHSGPSMDLPEV-----------PWPTNVLAGVGRFLYNILMRDIKIDAHIMRQ 722
Query: 399 --QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI 456
++ A ++ PAF R + K K + V L L R +R +
Sbjct: 723 KSKAKTTSATMASHNLLPAFYTLFRNQGRLVKEEVKPHPV-------LSRLLRASRQQTL 775
Query: 457 PY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEAL 511
+ +PML PP W+ G + S ++R H A QQ + ++ + + L P ++L
Sbjct: 776 TFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAVQQWERIRSSNPQHLYPAIDSL 835
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGGR---------LADLVDRNDVPLPEKPETEDEAQL 562
+ L + WRVN ++L V+ +++ GG + + ET A+
Sbjct: 836 NQLASVPWRVNTQLLDVIIKVFRNGGNAKLDVPQPPSSLPPLPTLPSSDKDSETVSPAER 895
Query: 563 RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622
K +++ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P+LN
Sbjct: 896 AKQFRDKLGHRRKQAEMYSLWCDALYRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLN 954
Query: 623 HLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFD 682
HLGSDL R +L F + + LG G WLK+H NL G + S RL + E + DI D
Sbjct: 955 HLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGMKKRDSVRERLLYAEEIMPDILD 1013
Query: 683 SADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
SAD PL GR WW K+++P+Q L C+ + + RS P ++S P+HQDGSCNGLQHYAA
Sbjct: 1014 SADNPLTGRMWWAKSDEPWQTLGCCMEIAKVQRSPDPAAYLSRFPIHQDGSCNGLQHYAA 1073
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDR 802
LGRD GA +VNL P DVYS +A V + DAQ V A+ L V R
Sbjct: 1074 LGRDQAGACSVNLSPSAIPQDVYSAVATMVERTRKTDAQSGLHV------AQALEGFVRR 1127
Query: 803 KLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQA 862
K++KQTVMT+VYGVT GAR QI R+LK+ + ++ AS Y T +L EMF +
Sbjct: 1128 KVIKQTVMTTVYGVTRYGARLQIARQLKDIDD-FPKDWVWPASTYLTTKTFESLREMFTS 1186
Query: 863 ARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET-- 919
R I W ECA++IA +Q V W TPLGLPVVQPY R K L+ L+
Sbjct: 1187 TREIQDWFTECARLIAGVCSQNVEWITPLGLPVVQPY---NRQEAKPVLRNSGLRVNANM 1243
Query: 920 -----EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
E+ + +Q+ AFPPNF+HSLD SHMM+T++ C + G+TF VHD +WTHAC V E
Sbjct: 1244 PMDMYERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHACRVPE 1303
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFP--------------------KLVFPPLPER 1014
+NR RE+FV L+ PI E L + ++++ LP++
Sbjct: 1304 LNRACREQFVALHSQPILEKLSEFMRQTYSFRDNDFTNDGSVEDLSKRQLNRTLRQLPQK 1363
Query: 1015 GDFDLREVLGSPYFFN 1030
GDFDL VL S YFF+
Sbjct: 1364 GDFDLNNVLSSVYFFS 1379
>gi|383863127|ref|XP_003707034.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Megachile
rotundata]
Length = 1152
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/682 (37%), Positives = 377/682 (55%), Gaps = 52/682 (7%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W D +G + ++ + + D I PAF R ++E +
Sbjct: 496 WSLDVLINIGKFLYNIILNDIILHPNMLKGQDLKCSI-PAFYTLFR--NRENYLSEQ--- 549
Query: 436 VIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
I+ +PLV K L R ++ ++ + +P PP WT G + MR +
Sbjct: 550 -IKPHPLVSK-LYRDSKTRILTFDSHILPSHAPPRPWTSIYSGGYLMTKIDFMRL-PSDS 606
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
++ TP KQL P+F++L+ L + W VN +L + +I+ GG V R L
Sbjct: 607 PWHKLQNTPGKQLFPIFDSLNQLSSIPWMVNTDILDIAIKIFQNGGSEKLNVPRPISVLS 666
Query: 552 EKPETEDEAQLRKWQWKVRNVKKENRERH---SQRCDIELKLSVARKMKDEEGFYYPHNV 608
P ++ A +++ + V + + ++R+ S CD +LS+A ++++ F+ PHN+
Sbjct: 667 LPPSVKENATIQEKRSAVLALAQYKQKRYDMYSLWCDALYRLSIANHLRNK-VFWLPHNL 725
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL--YAGGVDKLSH 666
DFRGR YP+ P+LNHL SDL R L FA G+ LG GL+WLK+H+ NL + G S
Sbjct: 726 DFRGRVYPVPPHLNHLSSDLGRSFLLFANGKPLGPDGLNWLKLHVINLTNFKKGS---SV 782
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
+ RL + ++++I DSA KPL G+ WW +AE+P+Q LA C+ + AL++ + E ++S
Sbjct: 783 QERLEYANQNMENILDSATKPLTGKMWWAEAEEPWQTLAGCMEIANALKTPNVEEYVSRF 842
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
PVHQDGSCNGLQHYAALGRD +GA +VNL + P DVY+ +A + Q DA+ D +
Sbjct: 843 PVHQDGSCNGLQHYAALGRDQIGAESVNLYPFDVPNDVYTAVATIIEKQRQIDAKNDVKI 902
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-RGAPMEEAELFGAS 845
A+LL V RK++KQTVMT+VYGVT GA+ QI ++L+ P E ++ AS
Sbjct: 903 ------AQLLEGFVKRKVIKQTVMTTVYGVTKYGAKHQIAKQLRNIEDFPYE--YVWPAS 954
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIA---SENQPVRWTTPLGLPVVQPYRKLG 902
Y A+ T +L MF++AR I WL CA+II+ EN V W TPLGLP+VQPY K
Sbjct: 955 IYLAESTFNSLRTMFKSAREIQDWLTTCARIISILYGEN--VEWVTPLGLPIVQPYIKQK 1012
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
H K ++ L +V +Q+ AF PNF+HSLD HMM+T++ C + +TF VH
Sbjct: 1013 PH--KMYMKFLRYVLHIYRVDSMKQKNAFAPNFIHSLDSCHMMLTSLYCSQENVTFVSVH 1070
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL--------------VF 1008
D +WTH C V MN+I RE+FV L+ PI ENL D F + + L
Sbjct: 1071 DCFWTHPCTVTIMNKICREQFVALHSEPILENLSDYFLQRYKPLSIKKKIIDVSDAYQCL 1130
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
+P +G FD+ VL S YFFN
Sbjct: 1131 LSVPSKGTFDINNVLKSVYFFN 1152
>gi|410949947|ref|XP_003981678.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Felis catus]
Length = 875
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/501 (45%), Positives = 308/501 (61%), Gaps = 32/501 (6%)
Query: 550 LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
LP +A+LR+ ++ K RE HS R D +LS+A+ ++ F+ PHN+D
Sbjct: 387 LPPDASPAQKAELRR---ELARCLKVAREMHSLRSDALYRLSLAQHLR-HRVFWLPHNMD 442
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669
FRGR YP P+ NHLGSDL R +LEFA+GR LG GL WLK+HL NL G + + R
Sbjct: 443 FRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPRGLDWLKVHLVNL-TGLKKREPLQAR 501
Query: 670 LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
L F + ++DI DSAD+P+ GR+WW++ E+P+Q LA C+ + A+R+ P +ISH PVH
Sbjct: 502 LVFADEVMEDILDSADRPMTGRKWWMEVEEPWQALACCMEIARAVRAPDPAAYISHFPVH 561
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPD 789
QDGSCNGLQHYAALGRD++GAA+VNL+ + P DVYSG+AA+V V +DA+R V
Sbjct: 562 QDGSCNGLQHYAALGRDSIGAASVNLLPSDVPQDVYSGVAAQVEVFRSQDAKRGVRV--- 618
Query: 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAA 849
A++L + RK+VKQTVMT VYGVT G R QI+RRL+E +E ++ AS Y
Sbjct: 619 ---AQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSDFPQEF-VWEASHYLV 674
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS 909
+ +L EMF R I WL E A++IA V W TPLG+P++QPY + + +
Sbjct: 675 RQVFNSLQEMFSGTRAIQHWLTESARLIAHAGSAVEWVTPLGIPIIQPYHRDSKVMISGG 734
Query: 910 LQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
+Q LT +++ +Q+ FPPNF+HSLD SHMM+TA+ C + GLTF VHD +W
Sbjct: 735 IQSLTFSHSGDTSQRPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCFW 794
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP---------------- 1010
THA DV+ MN++ RE+FV L+ PI NL K F P
Sbjct: 795 THAADVEVMNQVCREQFVRLHSQPILHNLSRFLMKRFCSGSRSPQHLKGMRTGKLQDTLK 854
Query: 1011 -LPERGDFDLREVLGSPYFFN 1030
+P+ G FDL++V S YFF+
Sbjct: 855 SVPKTGAFDLKQVKHSTYFFS 875
>gi|195437825|ref|XP_002066840.1| GK24692 [Drosophila willistoni]
gi|194162925|gb|EDW77826.1| GK24692 [Drosophila willistoni]
Length = 1353
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/703 (38%), Positives = 378/703 (53%), Gaps = 72/703 (10%)
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPADQLAD--APPDIFPAFTHALRTVSKETKGGSK 432
PW + VG + +L + I S + + + ++ PAF R + K K
Sbjct: 676 PWPSNVLTGVGRFLYNILMRDIKIDSHIMRQNNRQSTQNLMPAFYTLFRNQGRLVKEEVK 735
Query: 433 KYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
+ V L L R +R + + +PML PP W+ G + S ++R H
Sbjct: 736 PHPV-------LSRLLRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPH 788
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG---------- 537
A QQ + + T +Q+ P ++L+ L + WRVN ++L V+ ++ GG
Sbjct: 789 QAVQQWERINATNPEQIYPALDSLNQLASVPWRVNTQLLDVIIEVFQNGGDAKLDVPQPP 848
Query: 538 ------RLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
+D D+ D A ++++ K+ + +K+ E +S CD +LS
Sbjct: 849 SALPPLPANQAIDTKDI------SNADRA--KQFRDKLGHRRKQ-AEMYSLWCDALYRLS 899
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+A+ +D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R IL F + + LG G WLK+
Sbjct: 900 LAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSILIFDQAQPLGLDGFSWLKL 958
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
H NL G + S RL + E + +I DSAD PL G WW K+++P+Q LA C+ +
Sbjct: 959 HCINL-TGMKKRDSVRERLLYAEEIMPEILDSADNPLTGNMWWSKSDEPWQTLACCMEIA 1017
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
+ RS P ++S P+HQDGSCNGLQHYAALGRD GA +VNL P DVYS +AA
Sbjct: 1018 KVQRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDQAGACSVNLAPSPLPQDVYSAVAAL 1077
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
V + DA V A+ L V RK++KQTVMT+VYGVT GAR QI R+LK+
Sbjct: 1078 VERTRKSDAVNGLHV------AQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1131
Query: 832 RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPL 890
+ ++ AS Y T +L EMF + R I W ECA++I+ Q V W TPL
Sbjct: 1132 IDE-FPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCGQNVEWITPL 1190
Query: 891 GLPVVQPY-RKLGRHTVKTSLQILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMT 947
GLPVVQPY R+ +HT ++ L++ E+ + +Q+ AFPPNF+HSLD SHMM+T
Sbjct: 1191 GLPVVQPYSRQDVKHTARSGLRVNANMPMDMYERPNILKQKNAFPPNFIHSLDSSHMMLT 1250
Query: 948 AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL------LDSFQK 1001
++ C + G+TF VHD +WTHAC V E+NR RE+FV L+ PI E L L SF+
Sbjct: 1251 SLHCERQGITFVSVHDCFWTHACTVPELNRHCREQFVALHSQPILEQLSEYMRQLYSFKT 1310
Query: 1002 S-FP-------------KLVFPPLPERGDFDLREVLGSPYFFN 1030
S F LP++GDFDL VL S YFF+
Sbjct: 1311 SDFTNDGSVEDLSKRQLNRTLKQLPQKGDFDLDNVLESVYFFS 1353
>gi|194853889|ref|XP_001968243.1| GG24614 [Drosophila erecta]
gi|190660110|gb|EDV57302.1| GG24614 [Drosophila erecta]
Length = 1365
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/700 (37%), Positives = 370/700 (52%), Gaps = 60/700 (8%)
Query: 375 PWGQDARAKVGSRVIELLTQTAYI------QSPADQLADAPPDIFPAFTHALRTVSKETK 428
PW VG + +L + I Q + A P ++ PAF R + K
Sbjct: 682 PWPSTVLIGVGRFLYNILMRDIKIDAHIMRQKSKAKAATQPQNMLPAFYTLFRNQGRFVK 741
Query: 429 GGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVM 484
K + V L L R +R + + +PML PP W+ G + S ++
Sbjct: 742 EEVKPHPV-------LSRLFRASRKQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 794
Query: 485 RT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLA-DL 542
R H A QQ D + + + L P ++L+ L + WRVN ++L V+ ++ GG D+
Sbjct: 795 RLPHQAIQQWDRIMTSNPQNLYPALDSLNQLASVPWRVNTQLLDVIVHVFQNGGDAKLDV 854
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVR--------NVKKENRERHSQRCDIELKLSVAR 594
P +A+ R +++ E +S CD +LS+A+
Sbjct: 855 PQPPSSLPPLPMLPAKDAEGNAASSAERAKEFRDKLGYRRKQAEMYSLWCDALYRLSLAQ 914
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
+D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F + + LG G WLK+H
Sbjct: 915 HYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHCI 973
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NL G + S RL + E + DI DSAD PL GR WW K+++P+Q LA C+ +
Sbjct: 974 NL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCMEIANVH 1032
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
R P ++S P+HQDGSCNGLQHYAALGRD GA +VNL P DVYS +AA V
Sbjct: 1033 RCPDPTAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVEK 1092
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ DAQ V A+ L V RK++KQTVMT+VYGVT GAR QI R+LK+
Sbjct: 1093 SRKTDAQNGLHV------AEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDID- 1145
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLP 893
+ ++ AS Y T +L EMF + R I W ECA++I+ +Q V W TPLGLP
Sbjct: 1146 DFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLGLP 1205
Query: 894 VVQPY-RKLGRHTVKTSLQILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
VVQPY R+ +H+ ++ +I E+ + +Q+ AFPPNF+HSLD SHMM+T++
Sbjct: 1206 VVQPYNRQEIKHSPRSGFRISANMPMDMYERPNILKQKNAFPPNFIHSLDSSHMMLTSLH 1265
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV--- 1007
C + G+TF VHD +WTHA V E+NR+ RE+FV L+ PI E L ++++ V
Sbjct: 1266 CERQGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQLSAFMRQTYSFRVNDF 1325
Query: 1008 -----------------FPPLPERGDFDLREVLGSPYFFN 1030
LP++G+FDLR VL S YFF+
Sbjct: 1326 TNDGSVEDLSKRQLNRTLKQLPQKGNFDLRNVLDSVYFFS 1365
>gi|89148156|gb|ABD62821.1| mitochondrial single-subunit RNA polymerase [Paravahlkampfia sp. LA]
Length = 400
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/409 (51%), Positives = 294/409 (71%), Gaps = 11/409 (2%)
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
LG+D+ RG+L FAEG+ + + G+ WLKIHLANL G DKLS E R+ + ++++DDI DS
Sbjct: 1 LGADVNRGLLLFAEGQPISEKGIFWLKIHLANL--DGKDKLSFEERVQYIDDNIDDIMDS 58
Query: 684 ADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAAL 743
AD+PLEG+RW+L E+P+Q LA CI LT LR+ P ++S +PV DGSCNGLQHYAAL
Sbjct: 59 ADRPLEGKRWFLGTENPWQALAACIELTNCLRAPVPTEYVSKLPVQMDGSCNGLQHYAAL 118
Query: 744 GRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRK 803
GRD LGA VNL+ EKP DVY+G+ A V+ ++ DA+ + AK L+ ++ R
Sbjct: 119 GRDNLGALHVNLLPTEKPMDVYNGVLALVVKYLENDARNGNQL------AKSLVGKIYRS 172
Query: 804 LVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAA 863
+KQTVMTSVYGVTY+GAR+QI+RRLKE+ +E+ ++ CY A VTL +LGE+F+ A
Sbjct: 173 TIKQTVMTSVYGVTYVGAREQIQRRLKEKKE-IEDELVYQGPCYLASVTLKSLGEVFKGA 231
Query: 864 RGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM 923
+ IM WL ECA +I+S +PV W TPLGLPVVQPYR + +KT LQ +TL ++++
Sbjct: 232 KAIMDWLNECAYLISSAGEPVFWVTPLGLPVVQPYRSAQKMNIKTVLQNVTLVDRSDELP 291
Query: 924 VKR--QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
V R Q++AFPPN+VHS+D SHM+MTA AC+ ++FA VHDS+W HA +VD MN +R+
Sbjct: 292 VSRQKQKSAFPPNYVHSMDASHMLMTAKACKDDNISFASVHDSFWCHAQNVDRMNNHIRK 351
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+F+EL+ P+ E LL++F++ P + FPP+P +G DL ++ + YFF+
Sbjct: 352 QFIELHSQPLLETLLNTFKRMHPDVRFPPVPPKGSLDLNRIMHAKYFFD 400
>gi|170582929|ref|XP_001896353.1| DNA-dependent RNA polymerase family protein [Brugia malayi]
gi|158596464|gb|EDP34803.1| DNA-dependent RNA polymerase family protein [Brugia malayi]
Length = 1129
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/703 (37%), Positives = 384/703 (54%), Gaps = 66/703 (9%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
+G R ++GS + ++ + A L P F++ V++E+ +
Sbjct: 445 FGSGIREQLGSFLTSVVLEACQAHIKAGDLGKTIS--IPVFSYK-DVVNEESSFDGEVLC 501
Query: 436 VIECNPLVLKGLERTARH----MVIP--YMPMLVPPVKWTGYDKGAHFFLPSY-VMRTHG 488
V + + +E ++H MV P +PM VPP W +G ++ S+ V+R H
Sbjct: 502 VTKMVKICNAMMEVVSKHQFEWMVFPTDLLPMEVPPRPWLDSGEGGPYYGSSFNVLRPHP 561
Query: 489 AKQQRDTVKRTPK-----KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG------ 537
+ K KQ PVF+AL+ LG T W++N VL V +++
Sbjct: 562 DYSMINVNYEMKKRLKSRKQARPVFDALNDLGITPWKINEPVLDVALKVFEMAQTNTDEK 621
Query: 538 ---RLADLVDRNDVPLPEK-----PETEDEAQLRKW----QWKVRNVKKENRERHSQRCD 585
+L+ + + VP+P+ DE + W + K +KK N E +S C
Sbjct: 622 FLEKLSIPIHPSRVPIPDYVVKFGNMEVDELPINDWREYSKAKYEAMKKRN-ELNSLWCW 680
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+ +L++A K ++PH++DFRGR YP+ PYLNH+G DL R +L FAEGR LG G
Sbjct: 681 LLYRLTMANHFKGS-VLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDG 739
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
L WLK+H NL G + K S+ R+A+ + L I +SA++PL G WW K+E+P+Q L+
Sbjct: 740 LRWLKLHCINL-TGILKKESNFSRVAYADEMLPKILESANEPLSGEMWWTKSEEPWQTLS 798
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
CI + AL++ +P TF+SH+PV+QDGSCNGLQHYAALGRD G VNLV EKP+DVY
Sbjct: 799 ACIEIRNALQTGNPTTFVSHLPVYQDGSCNGLQHYAALGRDQEGGKEVNLVPAEKPSDVY 858
Query: 766 SGIAARVLVIIQRDAQRDPAVFPD-ALRAKLLL-SQVDRKLVKQTVMTSVYGVTYIGARD 823
S +AARV D Q + D AL + ++ + RK++KQTVMT+VYGVT GAR
Sbjct: 859 SSVAARVEQKRLEDEQSPESEVHDLALSLRTVMPGPISRKVIKQTVMTTVYGVTMNGARR 918
Query: 824 QIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP 883
QI+R+LK ++ E + Y A T +L + F ++ + W +CA+ I
Sbjct: 919 QIERQLK--AMEIDSNERMKYATYLADRTFRSLNDAFTSSMKMKDWFRDCAEAIVKLMHT 976
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSH 943
V W TPLGLPV QPY ++T ++ + R + + +Q AFPPNFVHSLD +H
Sbjct: 977 VEWITPLGLPVYQPY-------LETKMEENKVYRLPKSI---KQINAFPPNFVHSLDSTH 1026
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF-QKS 1002
MM+TA+ CR+ G+TFA VHD YWTHAC+VDEMN+I RE+FV L+ P+ + + F QK
Sbjct: 1027 MMLTALYCRRLGITFAAVHDCYWTHACEVDEMNKICREQFVHLHSEPLVKQCAEFFRQKY 1086
Query: 1003 FP---------------KLVFPPLPERGDFDLREVLGSPYFFN 1030
P + +F P +G DL V S YFF+
Sbjct: 1087 LPNWLRTVMLTEEFQELRKIFTPKVRQGVLDLDAVRHSTYFFS 1129
>gi|393906843|gb|EFO18076.2| DNA-dependent RNA polymerase [Loa loa]
Length = 1117
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 264/702 (37%), Positives = 384/702 (54%), Gaps = 66/702 (9%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
+G R ++GS ++ ++ + + A ++ P F+H V++E+
Sbjct: 433 FGSGIREQLGSFLMSVVLEACKLHVEAGSRGNSI--CIPVFSHK-DVVNEESSLDGDVLC 489
Query: 436 VIECNPLVLKGLERTARH----MVIPY--MPMLVPPVKWTGYDKGAHFF-LPSYVMRTH- 487
V + + +E ++H MV P +PM VPP W +G ++ P V+R H
Sbjct: 490 VTKMIKICNAMMEVVSKHQFEWMVFPTDSLPMEVPPRPWLDSGEGGPYYGSPFNVLRAHP 549
Query: 488 ---GAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD-- 541
+ KR +KQ PVF+AL+ LG T W++N VL V R++ AD
Sbjct: 550 DYSTINVNYEMKKRLKSRKQARPVFDALNDLGVTPWKINGPVLDVALRVFEMAQLEADEK 609
Query: 542 LVDRNDVPL-PEKPETED-----------EAQLRKW----QWKVRNVKKENRERHSQRCD 585
+++ +P+ P + D + + +W + K +KK N E +S C
Sbjct: 610 FLEKLSIPIHPSRVSIPDYVAKFGNMEVDKLPVNEWREYSKAKYEAMKKRN-ELNSLWCW 668
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+ +L++A K E ++PH++DFRGR YP+ PYLNH+G DL R +L FAEGR LG G
Sbjct: 669 LLYRLTMANHFK-ESVLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDG 727
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
L WLK+H NL G + K S+ R + + L + +SA+ PL G WW K+E+P+Q L+
Sbjct: 728 LRWLKLHCINL-TGILKKESNFTRAIYADEMLPKMLESANSPLSGEMWWTKSEEPWQTLS 786
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C+ + AL++ P TFISH+PV+QDGSCNGLQHYAALGRD G VNLV EKP+DVY
Sbjct: 787 ACMEIRNALQTGDPVTFISHLPVYQDGSCNGLQHYAALGRDQEGGMEVNLVPAEKPSDVY 846
Query: 766 SGIAARV-LVIIQRDAQRDPAVFPDALRAKLLLSQ-VDRKLVKQTVMTSVYGVTYIGARD 823
S +A RV ++ + D AL + ++ V RK++KQTVMT+VYGVT GAR
Sbjct: 847 SSVAVRVEQKRLEDEKSPDSEAHDLALSLRTIMPDPVSRKVIKQTVMTTVYGVTMNGARR 906
Query: 824 QIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP 883
QI+R+LK G ++ E + Y A T +L + F ++ + W +CA+ I
Sbjct: 907 QIERQLKAIG--IDSNERMKYATYLADRTFRSLNDAFTSSMKMKDWFRDCAEAIVKLMHT 964
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSH 943
V W TPLGLPV QPY + T+ ++ L + ++V AFPPNFVHSLD +H
Sbjct: 965 VEWITPLGLPVYQPYLE----TIMEENKVYRLPKSIKQV------NAFPPNFVHSLDSTH 1014
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF-QKS 1002
MM+TA+ CR+ G+TFA VHD YWTHAC+VD+MNRI RE+FV+L+ P+ + + F QK
Sbjct: 1015 MMLTALYCRRLGITFAAVHDCYWTHACEVDQMNRICREQFVQLHSEPLVKQCAEFFRQKY 1074
Query: 1003 FP---------------KLVFPPLPERGDFDLREVLGSPYFF 1029
P + +F P +G DL V S YFF
Sbjct: 1075 LPNWLRTVMLAEEFQELRKIFTPKVRQGMLDLDAVRKSTYFF 1116
>gi|312088786|ref|XP_003145994.1| DNA-dependent RNA polymerase [Loa loa]
Length = 1131
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 267/707 (37%), Positives = 386/707 (54%), Gaps = 76/707 (10%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
+G R ++GS ++ ++ + + A ++ P F+H V++E+
Sbjct: 447 FGSGIREQLGSFLMSVVLEACKLHVEAGSRGNSI--CIPVFSHK-DVVNEESSLDGDVLC 503
Query: 436 VIECNPLVLKGLERTARH----MVIPY--MPMLVPPVKWTGYDKGAHFF-LPSYVMRTH- 487
V + + +E ++H MV P +PM VPP W +G ++ P V+R H
Sbjct: 504 VTKMIKICNAMMEVVSKHQFEWMVFPTDSLPMEVPPRPWLDSGEGGPYYGSPFNVLRAHP 563
Query: 488 ---GAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD-- 541
+ KR +KQ PVF+AL+ LG T W++N VL V R++ AD
Sbjct: 564 DYSTINVNYEMKKRLKSRKQARPVFDALNDLGVTPWKINGPVLDVALRVFEMAQLEADEK 623
Query: 542 LVDRNDVPL-PEKPETED-----------EAQLRKW----QWKVRNVKKENRERHSQRCD 585
+++ +P+ P + D + + +W + K +KK N E +S C
Sbjct: 624 FLEKLSIPIHPSRVSIPDYVAKFGNMEVDKLPVNEWREYSKAKYEAMKKRN-ELNSLWCW 682
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+ +L++A K E ++PH++DFRGR YP+ PYLNH+G DL R +L FAEGR LG G
Sbjct: 683 LLYRLTMANHFK-ESVLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDG 741
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
L WLK+H NL G + K S+ R + + L + +SA+ PL G WW K+E+P+Q L+
Sbjct: 742 LRWLKLHCINL-TGILKKESNFTRAIYADEMLPKMLESANSPLSGEMWWTKSEEPWQTLS 800
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C+ + AL++ P TFISH+PV+QDGSCNGLQHYAALGRD G VNLV EKP+DVY
Sbjct: 801 ACMEIRNALQTGDPVTFISHLPVYQDGSCNGLQHYAALGRDQEGGMEVNLVPAEKPSDVY 860
Query: 766 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS-------QVDRKLVKQTVMTSVYGVTY 818
S +A RV Q+ + + + PD+ L LS V RK++KQTVMT+VYGVT
Sbjct: 861 SSVAVRVE---QKRLEDEKS--PDSEAHDLALSLRTIMPDPVSRKVIKQTVMTTVYGVTM 915
Query: 819 IGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
GAR QI+R+LK G ++ E + Y A T +L + F ++ + W +CA+ I
Sbjct: 916 NGARRQIERQLKAIG--IDSNERMKYATYLADRTFRSLNDAFTSSMKMKDWFRDCAEAIV 973
Query: 879 SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHS 938
V W TPLGLPV QPY + T+ ++ L + ++V AFPPNFVHS
Sbjct: 974 KLMHTVEWITPLGLPVYQPYLE----TIMEENKVYRLPKSIKQV------NAFPPNFVHS 1023
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LD +HMM+TA+ CR+ G+TFA VHD YWTHAC+VD+MNRI RE+FV+L+ P+ + +
Sbjct: 1024 LDSTHMMLTALYCRRLGITFAAVHDCYWTHACEVDQMNRICREQFVQLHSEPLVKQCAEF 1083
Query: 999 F-QKSFP---------------KLVFPPLPERGDFDLREVLGSPYFF 1029
F QK P + +F P +G DL V S YFF
Sbjct: 1084 FRQKYLPNWLRTVMLAEEFQELRKIFTPKVRQGMLDLDAVRKSTYFF 1130
>gi|431922184|gb|ELK19275.1| DNA-directed RNA polymerase, mitochondrial [Pteropus alecto]
Length = 800
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/477 (47%), Positives = 298/477 (62%), Gaps = 25/477 (5%)
Query: 570 RNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
R + E E HS R D +LS+A+ ++ F+ PHN+DFRGR YP P+ NHLGSDL
Sbjct: 333 RTMTFEAAEMHSLRTDALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLA 391
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
R +LEFAEGR LG GL WLKIHL NL G + S + RLAF E + DI DSAD+P+
Sbjct: 392 RALLEFAEGRPLGPHGLDWLKIHLVNL-TGLKKRESLQARLAFAEEVMPDILDSADRPMT 450
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
GR+WW++A++P+Q LA C+ + A+R+ P ISH PVHQDGSCNGLQHYAALGRD++G
Sbjct: 451 GRKWWMEADEPWQALACCMEIARAVRAPDPAAHISHFPVHQDGSCNGLQHYAALGRDSVG 510
Query: 750 AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTV 809
AA+VNLV + P DVYSG+A +V V ++DA++ V A++L + RK+VKQTV
Sbjct: 511 AASVNLVPSDLPQDVYSGVATQVEVFRRQDAEQGMRV------AQVLEGFISRKVVKQTV 564
Query: 810 MTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
MT VYGVT G R QI++RL+E +E ++ AS Y + +L EMF R I W
Sbjct: 565 MTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEASHYLVRQVFNSLQEMFSGTRAIQRW 623
Query: 870 LGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE---TEKVMVKR 926
L E A++IA V W TPLG+PV+QPY + + +Q LT ++K +
Sbjct: 624 LAESARLIARTGSAVEWVTPLGIPVIQPYHHDSKVLIGGGIQSLTFSNSGDTSQKPNTLK 683
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
Q+ FPPNF+HSLD SHMM+TA+ C + GLTF VHD +WTHA DV MN++ RE+FV L
Sbjct: 684 QKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCFWTHAADVAVMNQVCREQFVRL 743
Query: 987 YEMPIFENLLDSFQKSF-----PKL--------VFPPLPERGDFDLREVLGSPYFFN 1030
+ PI +L F PK V +P+ G F+L +V S YFF+
Sbjct: 744 HSQPILHDLSRFLVARFCSGPRPKNVRVSRLLDVLLSVPKTGAFNLEQVKRSTYFFS 800
>gi|350395973|ref|XP_003484395.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Bombus
impatiens]
Length = 1000
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/604 (39%), Positives = 349/604 (57%), Gaps = 51/604 (8%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAKQQRDTVKRTPKKQLEPVFEALDTLGNT 517
+P PP W G + + +R + + + T +QL P+F++L+ L +
Sbjct: 416 LPSYSPPSPWVSIHLGGYLITKTDFIRISSDFDRLWHKFENTEPEQLFPIFDSLNQLSSI 475
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEA--QLRKWQWKVRNVKK 574
W++N +L ++ +I+ GG + V ++ V +P P ++ + +K + +
Sbjct: 476 PWKINTAILDIVIKIFQDGGSVELNVPQSVSVLIPPGPINKNATVEEKQKAAIAIAQYNQ 535
Query: 575 ENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILE 634
E + +S CD KLS+A +D+ F+ PHN+DFRGR YP+ PYLNHL SDL R +L
Sbjct: 536 EKYDMYSLWCDTLYKLSIANHFRDK-IFWLPHNLDFRGRVYPVPPYLNHLSSDLGRSLLL 594
Query: 635 FAEGRTLGKSGLHWLKIHLANLY----AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
F +G+ LG +GL WLK+H+ NL AG V + RL + ++D+I DSA KPL G
Sbjct: 595 FGKGKPLGPNGLDWLKLHVINLTNFKKAGSVKE-----RLEYANQNMDNILDSATKPLTG 649
Query: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
+ WW ++E P+Q LA C+ + AL++ + E ++S PVHQDGSCNGLQHYAALG+D +GA
Sbjct: 650 KMWWKQSEAPWQTLAGCMEIANALKTPNVEEYVSSFPVHQDGSCNGLQHYAALGKDKIGA 709
Query: 751 AAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
+VNL + P DVYS + + + Q DA+ + + A++L V RK++KQTVM
Sbjct: 710 ESVNLHPFDTPKDVYSEVVSIIETQRQIDAKNNVKI------AQILEGYVKRKVIKQTVM 763
Query: 811 TSVYGVTYIGARDQIKRRLKE-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
T+VYGVT GA+ QI ++LK+ R P E ++ AS Y + T +L +MF++AR I W
Sbjct: 764 TTVYGVTKYGAKHQIAKQLKDMRNFPKE--HVWSASIYLTESTFHSLRKMFKSAREIQDW 821
Query: 870 LGECAKIIAS---ENQPVRWTTPLGLPVVQPYRK---LGRHTVKTSLQILTLQRETEKVM 923
ECA+II+S EN V W TPLGLP++QPY K L + S + R+ +++
Sbjct: 822 FTECAQIISSICCEN--VEWVTPLGLPIIQPYMKQKSLNNNINDNSNIFGNVYRKPDRI- 878
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
+QR AF PNF+HSLD +HMM+T + C K +TF VHD +WTH+C +D MN+I RE+F
Sbjct: 879 --KQRNAFAPNFIHSLDSTHMMLTGLHCNKNNITFVSVHDCFWTHSCTIDAMNKICREQF 936
Query: 984 VELYEMPIFENLLDSFQKSFPKL-----------------VFPPLPERGDFDLREVLGSP 1026
V L+ PI E+L F K + + +P G FD+ VL S
Sbjct: 937 VALHSEPILEDLAIFFVKRYLPIYKQLKCKNKPDIETIRRCLTNVPSTGTFDINNVLSSI 996
Query: 1027 YFFN 1030
YFFN
Sbjct: 997 YFFN 1000
>gi|320170252|gb|EFW47151.1| T7 bacteriophage-type single subunit RNA polymerase [Capsaspora
owczarzaki ATCC 30864]
Length = 948
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/619 (40%), Positives = 347/619 (56%), Gaps = 75/619 (12%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLP----SYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
+PM+VPP+ W ++ G + L S +MRT Q+R + + + +L VF+AL+ +
Sbjct: 358 LPMVVPPIPWISHNHGGYLLLSATGRSTLMRTIHNDQRR--ILKLSQNRLGGVFDALNAI 415
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLA-DLVDRNDVPLPEKPETEDEAQ--LRKWQWKVRN 571
T+WRVN+RVL++ IW+ GG D+ D D+P P +P D + ++ +
Sbjct: 416 QTTEWRVNSRVLAIQIAIWNQGGDPELDIPDVKDIPEPRQPTGADATHTVMAEYFATRQQ 475
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+++ENR HS RC ++ +L +A K++ Y P N+D+RGRAY + P L HLG D+ R
Sbjct: 476 IREENRNMHSMRCTVQYQLLIAYKLRHNR-LYMPVNLDWRGRAYTVSPNLTHLGGDMTRS 534
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE-- 689
L F + R LG++GL WLK+HLANL G DK S + R+ F +++ I DSA PL+
Sbjct: 535 TLMFHQRRPLGENGLFWLKVHLANLC--GADKCSLQDRVKFVDSNWKHIIDSARDPLKER 592
Query: 690 -GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
G WW + E+P+Q LA C L A + +PV DGSCNGLQHYAALG D L
Sbjct: 593 GGLGWWRQQENPWQALAACFELDAATSLPDHRLYECGLPVQMDGSCNGLQHYAALGGDVL 652
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808
GA VNL+ +P DVY +A ++ +R Q +A+R K L V RK+VKQT
Sbjct: 653 GALQVNLLPSPQPMDVYQAVAT---IVSERIDQLAAEGNHNAIRLKGL---VKRKIVKQT 706
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
VMTSVYGVT +GA QI R+L ++E++ + + A + AL MF A I +
Sbjct: 707 VMTSVYGVTVVGANAQIARQLAALPH-LDESQAHQLATFLAPIVFEALSAMFAQATEIKT 765
Query: 869 WLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQR 928
WL A+ IA+ V+W TPL LPV+QPY KL H VK ++ RQ+
Sbjct: 766 WLQVSARRIAASGDYVKWETPLNLPVLQPYIKLS-HGVK---------------VIDRQK 809
Query: 929 --TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
TAFPPNFVHSLD +HMMMTA + L FA VHDS+W HACDV ++NRILRE+FV++
Sbjct: 810 HATAFPPNFVHSLDATHMMMTASEAHRQNLVFASVHDSFWVHACDVTDLNRILREQFVKM 869
Query: 987 YEMPIFENLLDSFQ-----KSFPK------------------------------LVFPPL 1011
+ P+ + L D+F+ ++ PK L FP L
Sbjct: 870 HSFPLMQQLRDTFKAVYADRTHPKGIDKMDQDGDSEAVADVAPDQPRLKGGHVALTFPAL 929
Query: 1012 PERGDFDLREVLGSPYFFN 1030
P RG DL EVL S +FF+
Sbjct: 930 PPRGSLDLNEVLKSEFFFD 948
>gi|321470970|gb|EFX81944.1| hypothetical protein DAPPUDRAFT_49577 [Daphnia pulex]
Length = 975
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/593 (39%), Positives = 342/593 (57%), Gaps = 53/593 (8%)
Query: 468 WTGYDKGAHFFLPSYVMRTHG-AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526
W+ + G + ++R A +QR + TP +QL P +AL+ LG+ WR+N +L
Sbjct: 406 WSSHKCGGYLVTDVSLVRLPAHASKQRLRLANTPPQQLYPALDALNALGSIPWRINGSIL 465
Query: 527 SVLDRIWSCGG----RLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQ 582
++ +I++ G + +P P E + +++ ++ ++ K++ E +S
Sbjct: 466 DLVTQIFNANGSKELHIPQPPSALAIPSPVAAEADGSHKVKAYRDRIA-FKRQKAEMYSL 524
Query: 583 RCDIELKLSVARKMKDEEGFYYPHNVDFR-GRAYPMHPYLNHLGSDLCRGILEFAEGRTL 641
CD +LS+A +D+ F+ PHN+DFR GR YP P+L HL D+ R +L FA+G+ L
Sbjct: 525 WCDSLYRLSLANHFRDKV-FWLPHNMDFRLGRVYPCSPHLTHLSHDMARSLLFFAQGKPL 583
Query: 642 GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPF 701
G G +WLK+H+ NL G + R A+ E + +I DSAD PL GR+WW+ +++P+
Sbjct: 584 GADGFNWLKLHVINL-TGTKKREPISERYAYAEKIMPEILDSADNPLTGRQWWVNSDEPW 642
Query: 702 QCLAVCINLTEALRS-SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK 760
Q LA C+ + ALR PE ++ H+P+HQDGSCNGLQHYAALGRDT+GA +VNL ++
Sbjct: 643 QTLAACMEVANALRCPDGPEAYVCHLPIHQDGSCNGLQHYAALGRDTVGAESVNLTPADR 702
Query: 761 PADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIG 820
P DVYS +A +++R+ +D A + A+LL ++RK++KQTVMT+VYGVT G
Sbjct: 703 PQDVYSNVAN----LVERERSKDAA--NNVEIAQLLAGLINRKIIKQTVMTTVYGVTRYG 756
Query: 821 ARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS- 879
AR QI ++LKE + E G S Y A T +L +MF +A+ I W E AK+I++
Sbjct: 757 ARLQIAKQLKELPSLTTEQVQVG-SVYLADKTFQSLQDMFTSAKDIQDWFTESAKLISTV 815
Query: 880 ENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSL 939
+ V W TP+GLPVVQ Y E + +QR AFPPNF+HSL
Sbjct: 816 AGESVEWITPIGLPVVQSYNN-------------NPYDEASRPNAIKQRNAFPPNFIHSL 862
Query: 940 DGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL---- 995
D SHMM+TA+ C++ G+TFA +HD +WTH C V EMN+I R++FV L+ PI E+L
Sbjct: 863 DSSHMMLTALYCQRKGITFASIHDCFWTHPCTVAEMNKICRQQFVSLHSQPILEDLSKFL 922
Query: 996 ----------LDSFQKSFPK--------LVFPPLPERGDFDLREVLGSPYFFN 1030
D+ PK + +P RG FDLR VL S YFF+
Sbjct: 923 VSQFAVRASGADAVDDDTPKGLARHRLNQIISEVPRRGMFDLRLVLDSVYFFS 975
>gi|270356866|gb|ACZ80653.1| putative DNA-dependent RNA polymerase RPO41 [Filobasidiella
depauperata]
Length = 1181
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 268/719 (37%), Positives = 391/719 (54%), Gaps = 90/719 (12%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
Y LP D +A+IT+ ++M + +GG +V++ +G A+E E R
Sbjct: 411 YLSLLPVDKLALITILEIMRMAGSGGIIDGMKVLRGMVAVGKAVETEFRAETI------- 463
Query: 324 NETKNKEDEEGDES----NTVTTEQEK-LRKKVTDLIKK---QKLPAVRRIVKG------ 369
++ G +S T+ + +K R+ ++ + KK Q + R I
Sbjct: 464 ------KNVAGIDSYHWMRTIDPQTQKPSRQLISSVWKKIGNQAGESQRHISSSSNSEDM 517
Query: 370 QDDFKP-WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI--FPAFTHALRTVSKE 426
+D + P W + + VGS +++ L + A ++ A + PAFTHA V
Sbjct: 518 KDLWTPAWSRMIQLGVGSELVDALLKVAKVKREATNAVTGEKVVEEQPAFTHAYEYVR-- 575
Query: 427 TKGGSKKYGVIECNPLVLKGLERTARHMVI--PYMPMLVPPVKWTGYDKGAHFF---LPS 481
K GVI+ NP+V + L +VI ++PMLVPP+ W +D G + L
Sbjct: 576 ----GKCLGVIKLNPVVAERLANDDIGVVIHPKHLPMLVPPLPWRAHDNGGYLMHSGLTV 631
Query: 482 YVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLA 540
VMR + +Q+ +K + LEPVF LD L +T W++N +V V+ W+ G +A
Sbjct: 632 PVMRYKESLEQQKWLKAAAEAGHLEPVFHGLDVLSSTPWQINRKVFDVVLEAWNQGHAIA 691
Query: 541 DLV---DRNDVPLPEKPETEDE-AQLRK-WQWKVRNVKKENRERHSQRCDIELKLSVARK 595
D+ + D P+KPE ++ QLR + K++ V+ + R+ H++RC + +AR
Sbjct: 692 DIPPSKEMADYEFPDKPEPANQDPQLRLLYVEKMKKVRAQQRKDHAERCKFNYNIEIARS 751
Query: 596 -MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
+KD FY PHN+DFRGRAYP+ P+L+ +G DLCRG+L F + LG +GL WLKIHLA
Sbjct: 752 YLKDT--FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGLTGLKWLKIHLA 809
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
N+Y G DK S R F ++ +IFDSA+ PL G RWWLKAEDP+QCLA C LT AL
Sbjct: 810 NVY--GYDKASFGERAKFAADNEKEIFDSAENPLTGNRWWLKAEDPWQCLAACFELTAAL 867
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
RSS P + S +PVHQDG+CNG+QHYAALG D GA AVNL A ++PAD+Y+G+ V
Sbjct: 868 RSSDPAAYESALPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNK 927
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+I D ++ V A L+ + RK+VKQTVMT+VYGVT++GARDQI ++L RG
Sbjct: 928 VIAEDQRQCHEV------ASLIKGPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLNTRGD 981
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKII----------------- 877
E +F S Y AK L +G++F A+ IM WL A++I
Sbjct: 982 IAPE-HIFAVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISRSVSSQRLQEAANCFS 1040
Query: 878 -------ASENQPVR-------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKV 922
A+ ++ R WTTPLGLPVVQPYRK + + I ++++ +E +
Sbjct: 1041 TSTKSGKAASSRAAREFMSAVIWTTPLGLPVVQPYRKAHKKQIHDGASISSVEQMSELI 1099
>gi|147843606|emb|CAN79881.1| hypothetical protein VITISV_017990 [Vitis vinifera]
Length = 305
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/266 (75%), Positives = 229/266 (86%)
Query: 765 YSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQ 824
+S I +V I++RD+ +DPA P AL AK+L+ QVDRKLVKQTVMTSVYGVTYIGAR+Q
Sbjct: 40 HSSICTKVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQ 99
Query: 825 IKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPV 884
IKRRL E+G +E LF A+CYAAKVTL ALGE+FQAAR IM+WLGECAK+IASENQPV
Sbjct: 100 IKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPV 159
Query: 885 RWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHM 944
+WTTPLGLPV+QPY K RH ++TSLQ+L LQRE V++++QRTAFPPNFVHSLDGSHM
Sbjct: 160 QWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHM 219
Query: 945 MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP 1004
MMTAVACR AGL FAGVHDS+WTHACDVD+MNRILREKFVELY MPI ENLL+SFQ S P
Sbjct: 220 MMTAVACRDAGLCFAGVHDSFWTHACDVDKMNRILREKFVELYSMPILENLLESFQTSHP 279
Query: 1005 KLVFPPLPERGDFDLREVLGSPYFFN 1030
L FPPLP+RG+FDLREVL SPYFFN
Sbjct: 280 TLTFPPLPDRGNFDLREVLESPYFFN 305
>gi|157111313|ref|XP_001651483.1| DNA-dependent RNA polymerase, putative [Aedes aegypti]
gi|108868341|gb|EAT32566.1| AAEL015297-PA [Aedes aegypti]
Length = 767
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/616 (39%), Positives = 342/616 (55%), Gaps = 29/616 (4%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W + A VG + +L I A A+ P + PAF R +K K K +
Sbjct: 151 WPKAAVNGVGKFLYNILKNDVKINVNATSKANRQPKLVPAFYSLFRYEAKIAKEQIKPH- 209
Query: 436 VIECNPLVLKGLERTARHMV---IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQ 491
P+++K ++ + + I +PM+ PP W+ G + S ++R A Q
Sbjct: 210 -----PVLIKLYRKSQQENLKFDINLVPMVCPPQPWSTPVNGGYILAKSDLIRLPQQAHQ 264
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
Q + + + + P +AL+ L + W+VN VL ++ +++ GG V LP
Sbjct: 265 QSERINEANPQDMYPTLDALNQLASIPWKVNEEVLDIVLEVFNNGGNAKLDVPEPPSSLP 324
Query: 552 EKPETEDEAQLRKWQWKVRNVKKENRERHSQR------CDIELKLSVARKMKDEEGFYYP 605
ET ++ + + V+K+ R Q CD +LS+A +D+ F+ P
Sbjct: 325 SIVETIPRNEMTGFD-RFNMVRKKMTHRRKQGDMYSLWCDALYRLSLANHFRDKV-FWLP 382
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
N+DFRGR YP+ P+LNHLG DL R ++ F + + LG G +WLK+H NL G + S
Sbjct: 383 QNIDFRGRVYPIPPHLNHLGHDLARCLMVFHQKKPLGPDGFNWLKLHCINL-TGLKKRDS 441
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
E RL + + +DDI DSAD+PL GR WW +++P+Q LA CI + + RS P F+S
Sbjct: 442 VEDRLKYADEIMDDILDSADRPLTGRMWWSSSDEPWQTLACCIEIAKVHRSPDPAKFMSG 501
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
P+HQDGSCNGLQHYAALGRDT GA +VNL P DVYS +AA V +DA+ D
Sbjct: 502 FPIHQDGSCNGLQHYAALGRDTAGAVSVNLAPSPVPQDVYSAVAALVEDSRTKDAENDVK 561
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
V AK+L + RK++KQTVMT+VYGVT GAR QI R+L E + ++ AS
Sbjct: 562 V------AKILEGFIKRKVIKQTVMTTVYGVTRYGARKQIARQL-EYIDEFPKDWVWPAS 614
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRH 904
Y T AL EMF +A+ I W +CA++I++ Q V W TPLGLPVVQPY + R
Sbjct: 615 SYLTVKTFNALSEMFTSAKEIQDWFTDCARLISAVCAQNVEWVTPLGLPVVQPYNRSERQ 674
Query: 905 TVKTSLQILT--LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
++QI EK + +Q+ AFPPNFVHSLD SHMM+T++ C +AGLTF VH
Sbjct: 675 ASSKTIQIPEHFSMDSYEKPNIMKQKNAFPPNFVHSLDSSHMMLTSLFCERAGLTFISVH 734
Query: 963 DSYWTHACDVDEMNRI 978
D YWTHAC V MN++
Sbjct: 735 DCYWTHACTVPTMNKV 750
>gi|324503368|gb|ADY41467.1| DNA-directed RNA polymerase [Ascaris suum]
Length = 827
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 355/616 (57%), Gaps = 60/616 (9%)
Query: 459 MPMLVPPVKWTGY-DKGAHFFLPSYVMRT---HGAKQQRDTVKRT--PKKQLEPVFEALD 512
+PM +PP W Y D G + PS V R + D V+R + Q PVF+AL+
Sbjct: 228 LPMKIPPRPWIDYGDGGPLYTKPSDVFRNLPDYPRMIISDEVRRRIRGRSQARPVFDALN 287
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLA--DLVDRNDVPL-------PEKPET------E 557
LG T WR+N+ +L +L ++ L+ D++ R +PL P+ T
Sbjct: 288 DLGATPWRINSAMLDILIEVFKMTPDLSKGDMLHRLAIPLRSDTIKIPDFVATFGEKVRV 347
Query: 558 DEAQLRKWQWKVRN----VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
DE KW+ +N VKK N E +S + +L +A +++ ++ HN+DFRGR
Sbjct: 348 DEIPSDKWREYSKNKYEAVKKRN-ELNSLWYWLMYRLVMAEHFRND-VLFFAHNMDFRGR 405
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
YP+ PYL+H+G D+ R +L FAEG+ LG G WLK+H NL G + + S E RLAF
Sbjct: 406 VYPISPYLSHMGDDISRSLLRFAEGKQLGDDGFRWLKLHCINL-TGHLKRESIENRLAFF 464
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
+ L I DSA+ PL G +WW+++++P+Q LA CI + +ALRS P TF+SH+P+HQDGS
Sbjct: 465 DKILPKILDSANNPLNGDQWWMRSDEPWQTLAACIEIRDALRSGDPSTFVSHLPIHQDGS 524
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVL-VIIQRDAQRDPAV--FPDA 790
CNGLQHYAALGRD G + VNL+ + PADVYS +A RV ++ + DP V A
Sbjct: 525 CNGLQHYAALGRDRQGGSEVNLLPSKLPADVYSSVAKRVEDKRLEDEKSGDPDVKELAIA 584
Query: 791 LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAK 850
LRA L S V RK++KQTVMT+VYGVT GA QIKR+LK +E +L + Y A+
Sbjct: 585 LRAA-LPSPVPRKVIKQTVMTTVYGVTMYGATQQIKRQLK--ALEIESDQLGKFASYLAQ 641
Query: 851 VTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
T +L + F ++ + W +CAK I PV W TPLGLPV+QPY KL + K
Sbjct: 642 KTFASLHDAFTSSMQLKDWFRQCAKAIVHLMHPVEWETPLGLPVMQPYLKLKKKHNKLC- 700
Query: 911 QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHAC 970
VM+K Q AFPPNFVHSLD +HMM+T + CR+ G+TFA VHD YWTHAC
Sbjct: 701 --------LLPVMMK-QVNAFPPNFVHSLDSTHMMLTTLHCRRLGITFAAVHDCYWTHAC 751
Query: 971 DVDEMNRILREKFVELYEMPIFENL----------------LDSFQKSFPKLVFPPLPER 1014
VD MN + R++F+ L++ P+ + +D+ + + + VF P +
Sbjct: 752 HVDRMNVLCRDQFILLHKQPLVQQCGKFFIEKYLPPRRRKAMDAMELAHFESVFKPSMKT 811
Query: 1015 GDFDLREVLGSPYFFN 1030
G D+ ++ S YFF+
Sbjct: 812 GLLDIEDIRKSVYFFS 827
>gi|340730181|ref|XP_003403364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Bombus terrestris]
Length = 1248
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 253/687 (36%), Positives = 377/687 (54%), Gaps = 58/687 (8%)
Query: 373 FKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSK 432
F W QD +G + ++ ++ + D I PAF R G+
Sbjct: 591 FLKWPQDVIINIGKFMYHIILNDIMLKPEMLKGQDLKYSI-PAFYTLFRN------KGTY 643
Query: 433 KYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMR-TH 487
I+ +PLV K L R + + +P PP W G + + +R +
Sbjct: 644 LSEQIKPHPLVSK-LYREIHLETLTFESLLLPSCSPPSPWVSIYLGGYLITNTDFIRISS 702
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRND 547
+ T +QL P+F++L+ L + W++N +L ++ +I+ GG + V ++
Sbjct: 703 DCSVLWHKFENTKPEQLFPIFDSLNQLSSIPWKINTAILDIVIKIFQDGGSVELNVPQSV 762
Query: 548 VPLPEKPETEDEAQLRKWQWKVRNVKKENRERH---SQRCDIELKLSVARKMKDEEGFYY 604
L A + + Q + + N++++ S CD KLS+A +++ F+
Sbjct: 763 SALTPPNPINKNATVEEKQKAAIAIAQYNQKKYDMYSLWCDTLYKLSIANHFRNK-IFWL 821
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
PHN+DFRGR YP+ PYLNHL SDL R +L F +G+ LG +GL WLK+H+ NL
Sbjct: 822 PHNLDFRGRVYPVPPYLNHLSSDLGRSLLLFGKGKPLGPNGLDWLKLHIINL-TNFKKAD 880
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
S + RL + ++D+I DSA KPL G+ WW ++E+P+Q LA C+ + AL++ + E +IS
Sbjct: 881 SVKERLEYANQNMDNILDSATKPLTGKMWWKQSEEPWQTLAGCMEIANALKAPNVEEYIS 940
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
PVHQDGSCNGLQHYAALG+D +GA +VNL + P DVYS + + + Q DA+ +
Sbjct: 941 TFPVHQDGSCNGLQHYAALGKDKIGAESVNLHPFDTPKDVYSEVVSIIETQRQIDAKNNV 1000
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-RGAPMEEAELFG 843
+ A++L V RK++KQTVMT+VYGVT GA+ QI ++LK+ P E ++
Sbjct: 1001 KI------AQILEGYVKRKVIKQTVMTTVYGVTKYGAKIQIIKQLKDMENFPKE--HIWP 1052
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS---ENQPVRWTTPLGLPVVQPYRK 900
A Y + T +L +MF++AR I W CA+II+S EN V W TPLGLP+VQPY K
Sbjct: 1053 AGVYLTESTFHSLRQMFKSAREIQDWFTACAQIISSICCEN--VEWITPLGLPIVQPYMK 1110
Query: 901 LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG 960
K+S +++ R+ + + +QR AF PNF+HSLD +HMM+T + C K +TF
Sbjct: 1111 -----QKSSKDYISV-RKPDTI---KQRNAFAPNFIHSLDSTHMMLTGLNCNKNNITFVS 1161
Query: 961 VHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK----SFPKL---------- 1006
VHD +WTH C VD MN+I RE+FV L+ PI E+L F K S+ +L
Sbjct: 1162 VHDCFWTHPCTVDAMNKICREQFVALHSEPILEDLAIFFVKRYLPSYEQLKCKNKPDIEE 1221
Query: 1007 ---VFPPLPERGDFDLREVLGSPYFFN 1030
+P +G FD+ +VL S YFFN
Sbjct: 1222 IRKCLTNVPSKGTFDINKVLSSVYFFN 1248
>gi|156088049|ref|XP_001611431.1| DNA-dependent RNA polymerase [Babesia bovis T2Bo]
gi|154798685|gb|EDO07863.1| DNA-dependent RNA polymerase, putative [Babesia bovis]
Length = 1088
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 269/713 (37%), Positives = 367/713 (51%), Gaps = 73/713 (10%)
Query: 371 DDFKPWGQDARAKVGSRVIELLTQTAYIQ-----------SPAD--------QLADAPPD 411
DD K W A VG ++ L ++ Y+Q S A+ L +A PD
Sbjct: 396 DDQKQWNSKQSAAVGGYLLHALVESCYVQVDLTTALRQTNSFAELDASMLIPDLNNADPD 455
Query: 412 IFPAFTHALR-TVS-------------------KETKGGSKKYGVIECNPLVLKGL-ERT 450
H L+ TVS K + G K YGV+E + L +
Sbjct: 456 STKKKRHWLKKTVSRIRQSRFDASKVEIAAFAHKVHRHGVKVYGVLEMRECCMIHLRDAV 515
Query: 451 ARHMV-IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFE 509
AR +V + +PM+ P WT G L Y +RT Q R T L V +
Sbjct: 516 ARGLVNLSCLPMVCEPKPWTSVASGGLALLKHYFIRT----QCRPTYD-VRVYDLSRVLK 570
Query: 510 ALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKV 569
+ G W++N VL VL ++W D LP + D+ + +
Sbjct: 571 VATSFGKVPWKINGNVLQVLQKLW-----------ETDAVLPVRSFLPDKTLVEADPSTL 619
Query: 570 RNVKKENRERHSQRCDI-ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDL 628
NV +R C + E +L VA E Y+P N+DFRGR YP+ P+LNH+ D+
Sbjct: 620 VNVM--DRANALSECSLFERRLRVASDFLMEPRIYFPQNIDFRGRMYPLSPHLNHMADDV 677
Query: 629 CRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
CRG+L+FA+ + LG+ G WLK+H++NLY G+DK+ R+A+ E + + I P
Sbjct: 678 CRGLLKFADKKPLGERGFFWLKVHISNLY--GIDKVPLAERVAWVEKNTNMIQQLVADPF 735
Query: 689 E--GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRD 746
+ +W + E PFQ A ++ ALRS +P ++ S IPVHQDGSCNGLQHYAALGRD
Sbjct: 736 AELSQSFWRRVESPFQFYAASVDYVAALRSGNPYSYQSDIPVHQDGSCNGLQHYAALGRD 795
Query: 747 TLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR---AKLLLSQ--VD 801
G AAVNL+ E+P DVY + V+ ++ D Q ++ P + R AKL L +
Sbjct: 796 LSGGAAVNLIPDERPQDVYQQVLLEVIAKVRTDYQCTASIEPISKRSFMAKLCLEHGILR 855
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERG--APMEEAELFGASCYAAKVTLTALGEM 859
RK+VKQTVMT YGVT GA QI+ RLKE A M ++ + Y A L ++ +
Sbjct: 856 RKIVKQTVMTICYGVTRTGAVSQIEARLKEIDTIASMGNQQVKQLASYIAGKVLGSIKTV 915
Query: 860 FQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET 919
F A GI WL + + N PV W +P+GLP QPY K V+T +Q + +
Sbjct: 916 FAEAMGIKKWLDDISAAHNRLNVPVTWISPIGLPCEQPYCKAVTKVVRTPIQAINISENA 975
Query: 920 EKVMVKR-QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
V+ KR Q+ AFPPNFVHSLD SH+M+TA + G +FA VHDSYWTHACDVD MN+
Sbjct: 976 PSVVDKRKQKLAFPPNFVHSLDASHLMLTAEVLFRDGFSFAAVHDSYWTHACDVDIMNKA 1035
Query: 979 LREKFVELYEMPIFENLLDSFQKSF-PKLVFPPLPERGDFDLREVLGSPYFFN 1030
+RE+FV++Y PI ENL S K ++ PP P RG DL V S YFF+
Sbjct: 1036 IREQFVKMYNEPILENLYQSCNKRLRGEVTIPPPPPRGRLDLELVKDSVYFFH 1088
>gi|26325937|dbj|BAB22998.2| unnamed protein product [Mus musculus]
Length = 462
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/465 (46%), Positives = 291/465 (62%), Gaps = 33/465 (7%)
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+LS+A ++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL W
Sbjct: 8 RLSLAHDLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDW 66
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIHL NL G S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+
Sbjct: 67 LKIHLINL-TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCM 125
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
+ A+RS P +ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +
Sbjct: 126 EVAHAVRSPDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREV 185
Query: 769 AARVLVIIQRDAQRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR 827
A +V Q+DA+ + LR A++L + RK+VKQTVMT VYGVT G R QI++
Sbjct: 186 ATQVEEFRQQDAK-------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEK 238
Query: 828 RLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWT 887
RL+E +E ++ AS Y + +L EMF + R I WL E A +I+ PV W
Sbjct: 239 RLRELSDFPQEF-VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWV 297
Query: 888 TPLGLPVVQPYRKLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHM 944
TPLG+P++QPY + + VK LQ +TL E++K +Q+ FPPNF+HSLD SHM
Sbjct: 298 TPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKKGFPPNFIHSLDSSHM 357
Query: 945 MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP 1004
M+TA+ C + GL F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F
Sbjct: 358 MLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFC 417
Query: 1005 KL-------------------VFPPLPERGDFDLREVLGSPYFFN 1030
+ LP+ G FDL +V+ S YFF+
Sbjct: 418 SVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 462
>gi|294948962|ref|XP_002785982.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239900090|gb|EER17778.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1162
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/609 (39%), Positives = 349/609 (57%), Gaps = 36/609 (5%)
Query: 447 LERTARHMVIPYM-PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLE 505
LE + H++ + P++ P W G+ +G + + +R G+ R T + L
Sbjct: 565 LEGSPAHLLATKLQPLVCKPNPWQGFWEGGYLTHRTPFIRFTGS---RITSRDIRHVDLT 621
Query: 506 PVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP---ETEDEAQL 562
V LD LG+T +++N +VL V++ +W R+ D+ R D+ +P P E E +
Sbjct: 622 RVQRILDYLGSTPFKINEKVLDVVEEVWRQDLRIGDIPPRADLDIPNLPGEKEGLTEKAM 681
Query: 563 RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD-EEGFYYPHNVDFRGRAYPMHPYL 621
+ + V K+N + S R LKL AR ++ G Y+PHN+DFRGR YP+ P+L
Sbjct: 682 KSAKLAVMKAYKDNEKLASVRPTFLLKLKSARAFRNVSTGLYFPHNLDFRGRCYPLPPHL 741
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
H G DLCRG+L F E + LG+ G WL++HLANL+ G DKL + R+ +T+ + I
Sbjct: 742 QHQGDDLCRGLLMFNEKKRLGERGWWWLRLHLANLF--GHDKLKLQDRVDWTDRQTESIL 799
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS-SSPETFISHIPVHQDGSCNGLQHY 740
SA PL +WL+A+DP+Q LAV + EALR PE + + I VHQDGSCNGLQHY
Sbjct: 800 VSAADPLGNAEFWLEADDPWQALAVIFEVAEALRHPGGPEEYSTGISVHQDGSCNGLQHY 859
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQV 800
AALGRD GA AVN++ + DVY + V ++R A + A+ R + L +
Sbjct: 860 AALGRDEWGATAVNILPNAEVQDVYMIVLDIVKGKVERHADQGHAL----ARQAIELGVL 915
Query: 801 DRKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAKVTLTALGEM 859
RK+VKQTVMT YGVT +GARDQ+K++L++ G ++ EL + Y +++ LT++ E+
Sbjct: 916 KRKVVKQTVMTICYGVTSLGARDQVKKQLEDLVGDTLDSEELMQMAKYLSQLVLTSIDEV 975
Query: 860 FQAARGIMSWLGECAKIIASENQPVRWTTP-LGLPVVQPYRKLGRHTVKTSLQI------ 912
F+ A I W ++++ + PV W+TP LG+P QPYR + +V SLQ
Sbjct: 976 FEQAMKIKKWFDVASRVLTAHGLPVCWSTPVLGMPCRQPYR--AQASVDVSLQTSAMAGL 1033
Query: 913 ---------LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHD 963
+ ++ + V +QR FPPNF+HSLDG+HM++TA K GL FA VHD
Sbjct: 1034 NGAMQRYVKVNVESDDMPVSKTKQRMGFPPNFIHSLDGTHMLLTAEESAKHGLAFAAVHD 1093
Query: 964 SYWTHACDVDEMNRILREKFVELYEMPIFENLLD--SFQKSFPKLVFPPLPERGDFDLRE 1021
SYWTHACDVDE+N I+R+ FV+L+ PI +NL S + P LP RG+ L
Sbjct: 1094 SYWTHACDVDELNTIIRDMFVKLHNEPILDNLYRDLSIMLGVNSFLLPELPGRGNLQLDR 1153
Query: 1022 VLGSPYFFN 1030
V S +FF+
Sbjct: 1154 VRESAFFFD 1162
>gi|83376024|gb|ABC17816.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/660 (38%), Positives = 365/660 (55%), Gaps = 67/660 (10%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKEN----------- 576
+ ++ + + R +P PE E EA + K R++ ++
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAISKA---KFRDMTRDQYTAFQQGQAQR 709
Query: 577 -------RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL
Sbjct: 710 QAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLS 768
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
R +L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P
Sbjct: 769 RSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFG 827
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
G++WWL++E+P+Q L CI L AL SS P +ISH+P+HQDGSCNGLQHYAA+GRD+LG
Sbjct: 828 GKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLG 887
Query: 750 AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQT 808
A VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQT
Sbjct: 888 AKFVNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQT 940
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIM 867
VMT+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I
Sbjct: 941 VMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQ 1000
Query: 868 SWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKR 926
+W CA +I+++ + V W TPLGL VQ Y+K H+ L + +L R K +
Sbjct: 1001 NWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLAR---KPNTSK 1056
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
QR FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L
Sbjct: 1057 QRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINL 1116
Query: 987 YEMPIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ PI E L ++F +++ + F +P++GD DL V S +FF+
Sbjct: 1117 HSYPILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|83376026|gb|ABC17817.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 251/657 (38%), Positives = 364/657 (55%), Gaps = 61/657 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ---------------LRKWQWKVRNV 572
+ ++ + + R +P PE E EA ++ Q + +
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYTAFQQGQAQRQAY 712
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G++
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKK 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL SS P +ISH+P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + +L R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L ++F +++ + F +P++GD DL V S +FF+
Sbjct: 1120 PILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|83376038|gb|ABC17823.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/660 (38%), Positives = 365/660 (55%), Gaps = 67/660 (10%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKEN----------- 576
+ ++ + + R +P PE E EA + K R++ ++
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAMSKA---KFRDMTRDQYTAFQQGQAQR 709
Query: 577 -------RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL
Sbjct: 710 QAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLS 768
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
R +L FAEG+ LG GL WLK+H NL +G K S R+ + +++L DSA P
Sbjct: 769 RSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYADDNLSLFLDSASDPFG 827
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
G++WWL++E+P+Q L CI L AL SS P +ISH+P+HQDGSCNGLQHYAA+GRD+LG
Sbjct: 828 GKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLG 887
Query: 750 AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQT 808
A VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQT
Sbjct: 888 AKFVNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQT 940
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIM 867
VMT+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I
Sbjct: 941 VMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEMFESSQXIQ 1000
Query: 868 SWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKR 926
+W CA +I+++ + V W TPLGL VQ Y+K H+ L + +L R K +
Sbjct: 1001 NWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLAR---KPNTSK 1056
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
QR FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L
Sbjct: 1057 QRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINL 1116
Query: 987 YEMPIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ PI E L ++F +++ + F +P++GD DL V S +FF+
Sbjct: 1117 HSYPILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|83376042|gb|ABC17825.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/657 (38%), Positives = 361/657 (54%), Gaps = 61/657 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGREQEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPDEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ---------------LRKWQWKVRNV 572
+ ++ + + R +P PE E EA ++ Q + +
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYTAFQQGQAQRQAY 712
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G++
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKK 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL S P +ISH+P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + TL R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRTLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENL----------------LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L LD Q + + F +P++GD DL V S +FF+
Sbjct: 1120 PILEELSKAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|83376044|gb|ABC17826.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/657 (38%), Positives = 363/657 (55%), Gaps = 61/657 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ---------------LRKWQWKVRNV 572
+ ++ + + R +P PE E EA ++ Q + +
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYTAFQQGQAQRQAY 712
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G++
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKK 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL S P +ISH+P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + TL R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRTLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L ++F +++ + F +P++GD DL V S +FF+
Sbjct: 1120 PILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|83376022|gb|ABC17815.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/657 (38%), Positives = 363/657 (55%), Gaps = 61/657 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ---------------LRKWQWKVRNV 572
+ ++ + + R +P PE E EA ++ Q + +
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYTAFQQGQAQRQAF 712
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G++
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKK 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL S P +ISH+P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + TL R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRTLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L ++F +++ + F +P++GD DL V S +FF+
Sbjct: 1120 PILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|294462350|gb|ADE76724.1| unknown [Picea sitchensis]
Length = 255
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 223/255 (87%)
Query: 776 IQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
+QRDA +DPA DA A++LL QVDRKLVKQTVMTSVYGVTYIGARDQI++RLKERG
Sbjct: 1 MQRDALKDPATDRDAECARVLLGQVDRKLVKQTVMTSVYGVTYIGARDQIRKRLKERGCI 60
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
+E LF ASCYAA+ TLTAL EMF AAR IM+WLG+CAKIIASEN PVRWTTPLGLPVV
Sbjct: 61 ADEVALFSASCYAARTTLTALSEMFNAARSIMTWLGDCAKIIASENHPVRWTTPLGLPVV 120
Query: 896 QPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
QPYRK R V+TSLQ+L L++ET+KVMVKRQ++AFPPNFVHSLDGSHMMMTA+AC++AG
Sbjct: 121 QPYRKFARQLVRTSLQVLALRQETDKVMVKRQKSAFPPNFVHSLDGSHMMMTALACKEAG 180
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERG 1015
L+FAGVHDSYWTHA +V++MN ILREKFVELY PI ENLL+SF+ SFP+L FPPLP+RG
Sbjct: 181 LSFAGVHDSYWTHAANVEKMNHILREKFVELYSAPILENLLESFETSFPELTFPPLPDRG 240
Query: 1016 DFDLREVLGSPYFFN 1030
DF+L EVL SPYFFN
Sbjct: 241 DFELNEVLNSPYFFN 255
>gi|83376036|gb|ABC17822.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/657 (38%), Positives = 361/657 (54%), Gaps = 61/657 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ---------------LRKWQWKVRNV 572
+ ++ + + R +P PE E EA ++ Q + +
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYTAFQQGQAQRQAY 712
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G++
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKK 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL S P ISH+P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSPDPTNXISHLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF+++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLAHRTFDSLNEMFESSXKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + TL R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRTLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L ++F +++ + F +P++GD DL V S +FF+
Sbjct: 1120 PILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|83376030|gb|ABC17819.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 250/657 (38%), Positives = 363/657 (55%), Gaps = 61/657 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ---------------LRKWQWKVRNV 572
+ ++ + + R +P PE E EA ++ Q + +
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYTAFQQGQAQRQAY 712
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G++
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKK 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL SS P +IS +P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSSDPTNYISXLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPLDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + +L R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L ++F +++ + F +P++GD DL V S +FF+
Sbjct: 1120 PILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|83376028|gb|ABC17818.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 252/657 (38%), Positives = 363/657 (55%), Gaps = 61/657 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVSELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ-------LRKWQWKVRNVKKENR--- 577
+ ++ + + R +P PE E EA + + Q+K + R
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYKAFQQGQAQRQAY 712
Query: 578 -----ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G+
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKM 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL SS P +ISH+P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + +L R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD + TH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFRTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L ++F +++ + F +P++GD DL V S +FF+
Sbjct: 1120 PILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFFFS 1176
>gi|83376034|gb|ABC17821.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 250/657 (38%), Positives = 363/657 (55%), Gaps = 61/657 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ---------------LRKWQWKVRNV 572
+ ++ + + R +P PE E EA ++ Q + +
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSXARFRDMTRDQYTAFQQGQAQRQAY 712
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G++
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKK 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL SS P +ISH+P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAE-LFGASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ L AS Y A T +L EMF++++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPIIPSDKLSEASVYLAHRTFDSLNEMFESSQKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + +L R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
PI E L ++F +++ + F +P++GD DL V S + F+
Sbjct: 1120 PILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVVKHSTFXFS 1176
>gi|83376032|gb|ABC17820.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1171
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 248/649 (38%), Positives = 359/649 (55%), Gaps = 61/649 (9%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAVGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQ---------------LRKWQWKVRNV 572
+ ++ + + R +P PE E EA ++ Q + +
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPENIEPPSEAMSKARFRDMTRDQYTAFQQGQAQRQAY 712
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL R +
Sbjct: 713 IQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLSRSL 771
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA P G++
Sbjct: 772 LVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFLDSASDPFGGKK 830
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WWL++E+P+Q L CI L AL SS P +ISH+P+HQDGSCNGLQHYAA+GRD+LGA
Sbjct: 831 WWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLGAKF 890
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQTVMT
Sbjct: 891 VNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQTVMT 943
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWL 870
+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I +W
Sbjct: 944 TVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQNWF 1003
Query: 871 GECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
CA +I+++ + V W TPLGL VQ Y+K H+ L + +L R K +QR
Sbjct: 1004 ISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLAR---KPNTSKQRN 1059
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L+
Sbjct: 1060 GFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINLHSY 1119
Query: 990 PIFENLLDSFQKSF----------------PKLVFPPLPERGDFDLREV 1022
PI E L ++F +++ + F +P++GD DL V
Sbjct: 1120 PILEELSEAFLQNYINEDTKQKLDPVQLAKAEQTFRAVPKKGDLDLAVV 1168
>gi|444509517|gb|ELV09312.1| DNA-directed RNA polymerase, mitochondrial [Tupaia chinensis]
Length = 1350
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/486 (45%), Positives = 293/486 (60%), Gaps = 53/486 (10%)
Query: 567 WKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGS 626
+ R+ ++ RE HS R D +LS+A+ ++ + F+ PHN+DFRGR YP P+LNHLGS
Sbjct: 896 YSFRSYRQVAREMHSLRADALYRLSLAQHLR-QRVFWLPHNMDFRGRTYPCPPHLNHLGS 954
Query: 627 DLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADK 686
DL R +LEFAEGR LG GL WLKIHL NL G + S + RLAF +DDI DSAD+
Sbjct: 955 DLARALLEFAEGRPLGPQGLDWLKIHLINL-TGLKKRESLQARLAFANEVMDDILDSADR 1013
Query: 687 PLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRD 746
P+ GR+WW++A++P+Q LA C+ + A+RS P ++SH+PVHQDGSCNGLQHYAALGRD
Sbjct: 1014 PMTGRKWWMEADEPWQTLACCMEVARAMRSPDPTAYVSHLPVHQDGSCNGLQHYAALGRD 1073
Query: 747 TLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVK 806
++GAA+VNL+ + P DVYSG+AA+V + Q+DA + V A+ L V RK+VK
Sbjct: 1074 SVGAASVNLLPSDLPQDVYSGVAAQVELFRQQDAAQGVRV------AQELEGFVRRKVVK 1127
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGI 866
QTVMT VYGVT G R QI++RL+E +E ++ S Y + +L EMF R I
Sbjct: 1128 QTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEL-VWETSHYLVRQVFNSLQEMFAGTRAI 1186
Query: 867 MSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVK---TSLQILTLQRETEKVM 923
WL E A++IA V W TPLG+P++QPY + V T LQ++
Sbjct: 1187 QRWLTESARLIAHSGSAVEWVTPLGIPIIQPYHHDSKFLVSGAPTPLQVI---------- 1236
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
+HSLD SHMM+TA+ C + GLTF VHD +WTHA DV MN++ RE+F
Sbjct: 1237 ------------IHSLDSSHMMLTALHCYRRGLTFVSVHDCFWTHAADVAVMNQVCREQF 1284
Query: 984 VELYEMPIFENLLDSFQKSFPKLVFP-------------------PLPERGDFDLREVLG 1024
V L+ PI ++L K F P +PE G FDL +V
Sbjct: 1285 VRLHSRPILQDLSKFLVKRFCTHPSPNPQRLSQRIQATKLLETLLSVPETGTFDLEQVKR 1344
Query: 1025 SPYFFN 1030
S YFF+
Sbjct: 1345 STYFFS 1350
>gi|83376040|gb|ABC17824.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1172
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/617 (39%), Positives = 349/617 (56%), Gaps = 51/617 (8%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 542 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSDLSFPVTELPMVVPPRPW 595
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G +L V T ++ R+P L P +AL+ LG+T W +N +L
Sbjct: 596 VSDSSGG--YLLHEVEMTRRPVEEAVETPRSPNTLL-PTLDALNQLGSTPWIINKPILEC 652
Query: 529 LDRIWSCGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKEN----------- 576
+ ++ + + R +P PE E EA + K R++ ++
Sbjct: 653 IVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAMSKA---KFRDMTRDQYTAFQQGQAQR 709
Query: 577 -------RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+G DL
Sbjct: 710 QAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHMGCDLS 768
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
R +L FAEG+ LG GL WLK+H NL +G K S R+ + +++L DSA P
Sbjct: 769 RSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYADDNLSLFLDSASDPFG 827
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
G++WWL++E+P+Q L CI L AL SS P +ISH+P+HQDGSCNGLQHYAA+GRD+LG
Sbjct: 828 GKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYAAMGRDSLG 887
Query: 750 AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRKLVKQT 808
A VNL+ E P DVY IA+ I++R D A P A+ LL + RK++KQT
Sbjct: 888 AKFVNLIPSECPQDVYGEIAS----ILERKRSEDAQAGNPIAI---LLNGAIQRKVIKQT 940
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQAARGIM 867
VMT+VYGVT GA+ QI ++LK+ P+ ++ G AS Y A T +L EMF++++ I
Sbjct: 941 VMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEMFESSQKIQ 1000
Query: 868 SWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKR 926
+W CA +I+++ + V W TPLGL VQ Y+K H+ L + +L R K +
Sbjct: 1001 NWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLAR---KPNTSK 1056
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
QR FPPNFVHSLD SHMM+TA+ + G T+A VHD +WTH V+ MN + R++F+ L
Sbjct: 1057 QRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVHDCFWTHPATVEIMNEVCRQQFINL 1116
Query: 987 YEMPIFENLLDSFQKSF 1003
+ PI E L ++F +++
Sbjct: 1117 HSYPILEELSEAFLQNY 1133
>gi|427781025|gb|JAA55964.1| Putative mitochondrial/chloroplast dna-directed rna polymer
[Rhipicephalus pulchellus]
Length = 492
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/481 (46%), Positives = 293/481 (60%), Gaps = 38/481 (7%)
Query: 578 ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE 637
E +S CD KLS+A +D F++PHN+DFRGR YP P+ NHLGSD+ RGIL FA
Sbjct: 22 EMYSLWCDALYKLSIANHFRDRV-FWFPHNMDFRGRVYPCPPHFNHLGSDVVRGILLFAR 80
Query: 638 GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
G LG++GL WLKIHL NL G + RL F + +I DSAD P+ GRRWW K+
Sbjct: 81 GEPLGENGLDWLKIHLVNL-TGLKKREPVSERLRFANEMMPEILDSADNPMTGRRWWTKS 139
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA 757
++P+Q LA C + A+RS P I ++PVHQDGSCNGLQHYAALGRD GAA VNL
Sbjct: 140 DEPWQTLACCKEVAAAVRSPDPTRHICYLPVHQDGSCNGLQHYAALGRDAQGAAQVNLQP 199
Query: 758 REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGV 816
++P DVYSG+AA +++++ Q+D A + L+ AK+L + RK+VKQTVMT VYGV
Sbjct: 200 ADRPQDVYSGVAA----LVEQERQKDAA---NGLQIAKVLEGHIQRKVVKQTVMTVVYGV 252
Query: 817 TYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKI 876
T GA QI ++LK+ +E + A+ Y + T +L +MF A R I W CAK+
Sbjct: 253 TRFGAHLQILKQLKDLDDFPQE-HCWAAAHYLVQKTFLSLQQMFTATREIQDWFTICAKM 311
Query: 877 IASE-NQPVRWTTPLGLPVVQPYRKLG------RHTVKTSLQILTLQRETEKVMVKRQRT 929
I+ QPV W TPLGLPV+QPY K + + S + T+ ++ V +Q+
Sbjct: 312 ISYVCCQPVSWVTPLGLPVIQPYHKPTSVKSPISYGDRISAEYRTIFEMHQRPNVMKQKN 371
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNF+HSLD HMM+TA+ C+KAG+ F VHD YWTH VD MN+I RE+FV L+
Sbjct: 372 GFPPNFIHSLDSCHMMLTAIFCQKAGIQFVSVHDCYWTHPNTVDIMNKICREQFVALHSE 431
Query: 990 PIFENLLDSFQKSF------------------PKL--VFPPLPERGDFDLREVLGSPYFF 1029
PI E+L F ++F KL V +PE+G F L VL S YFF
Sbjct: 432 PILEDLSKHFVRTFGYKESEMAGVNKAAELAMQKLNKVIKQIPEKGSFKLENVLDSVYFF 491
Query: 1030 N 1030
+
Sbjct: 492 S 492
>gi|358334198|dbj|GAA52636.1| DNA-directed RNA polymerase mitochondrial [Clonorchis sinensis]
Length = 1130
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 241/642 (37%), Positives = 338/642 (52%), Gaps = 81/642 (12%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK---------KQLEPVFE 509
+PML PPV WT + +Y R +Q R + P K++ V +
Sbjct: 500 LPMLCPPVPWTDLHDAGYLVSRNYATRL--MRQTRASPVAEPALDDDLDFDAKRIPSVLD 557
Query: 510 ALDTLGNTKWRVNNRVLSVLDRIWSCGGR----LADLVDRNDVPLP-EKPETEDEAQLRK 564
AL+ L + WRVN +L+ L ++ GG + ++V R +P P T + R
Sbjct: 558 ALNCLASCPWRVNEPILNALIKVARAGGNRKLSIPEIV-RQTMPSPLSITNTMSYEERRA 616
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
+ R +K+ E S +LS+A + + F++PH++DFRGR YP P+ +H+
Sbjct: 617 ADRQAREAQKQYDEMRSLWATELYRLSIANQYRGRV-FWFPHSMDFRGRVYPCPPHFHHM 675
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
GSD+ RG++ FA+G LG+ GL WLKIHL NL G + S+ RL F E LDD+ DSA
Sbjct: 676 GSDVSRGLIVFAKGLPLGEHGLDWLKIHLVNL-TGLKKRCSNRDRLKFAEQLLDDVLDSA 734
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEAL-RSSSPETFISHIPVHQDGSCNGLQHYAAL 743
P GRRWW + E+P+Q LA C L A+ S P ++SH PVHQDGSCNGLQHYAAL
Sbjct: 735 RNPFNGRRWWQEQEEPWQVLACCKELMAAMEHPSGPHNYVSHFPVHQDGSCNGLQHYAAL 794
Query: 744 GRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRK 803
GRD GA +VNL AR++P DVYS +A V Q DA V AK+L V RK
Sbjct: 795 GRDCRGAESVNLTARDQPQDVYSDVAEVVEAQRQADAAAGIPV------AKVLEGFVRRK 848
Query: 804 LVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAA 863
++KQ+VMT+VYGVT GA +QI+R+L++ + A Y A++TL ++G +F ++
Sbjct: 849 VIKQSVMTTVYGVTLYGASEQIRRQLRDLEDFPGREWIGPAGTYLARLTLASIGAIFTSS 908
Query: 864 RGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVK--------------- 907
I +W G+ A+ I+ V W TPLGLPV QPY L
Sbjct: 909 TEIQAWFGQIAQHISRHLGNRVSWETPLGLPVTQPYMTLPSALTTDRFSEFTPSSPFSPP 968
Query: 908 -------TSLQILTLQRETEKVMVK-----------RQRTAFPPNFVHSLDGSHMMMTAV 949
+++++ + R + +Q+ AFPPNF+HSLD HMM+TA+
Sbjct: 969 SPTLLGASAMEVASRVRHNYAIHNANYKELPVPNPVKQQNAFPPNFIHSLDSCHMMLTAL 1028
Query: 950 ACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL--- 1006
C + G+TFA VHD +WTHA V+EMNRI RE+F+ L+ PI N D + F
Sbjct: 1029 HCFREGITFASVHDCFWTHAATVNEMNRICREEFIALHSEPILRNFADYLRSKFAYTKEE 1088
Query: 1007 ------------------VFPPLPERGDFDLREVLGSPYFFN 1030
+ +P+ G FDL EV S YFF+
Sbjct: 1089 ISQMNSELKRAKASAFNEILARVPKPGKFDLNEVRKSTYFFS 1130
>gi|302423578|ref|XP_003009619.1| DNA-directed RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261352765|gb|EEY15193.1| DNA-directed RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1299
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/472 (45%), Positives = 288/472 (61%), Gaps = 65/472 (13%)
Query: 588 LKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH 647
++L +AR +++ FY+PHN+DFRGRAYP+ YLNH+G+D RG+L FA+G+ LG+ GL
Sbjct: 648 VRLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFADGKELGEKGLK 706
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC 707
WLK+HLAN+Y G DK S R +F ++L +IFDSA KP+EG RWWLKAEDP+QCLA C
Sbjct: 707 WLKVHLANVY--GFDKASLRERESFAMDNLVNIFDSASKPMEGNRWWLKAEDPWQCLAAC 764
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
L AL S P F+SH+PVHQDG+CNGLQHYAALG DT GA VNL +KPADVYS
Sbjct: 765 FELKAALESPEPTKFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGDKPADVYSA 824
Query: 768 IAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR 827
+A V I +D + + F A+ K + RK+VKQTVMT+VYGVT+ GA+ Q+ +
Sbjct: 825 VANIVKDYIAKDLETNNP-FAIAVNGK-----ITRKVVKQTVMTNVYGVTFQGAKKQVLK 878
Query: 828 RL--------KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-----CA 874
+L KE G + + AS Y A + L MF+ A I WLGE C
Sbjct: 879 QLDAIYPDLPKESGI----SSMMLAS-YIATLIFKGLSSMFRGAHDIQYWLGEIGGRVCR 933
Query: 875 KI-------IASEN-----QPVR------------------------WTTPLGLPVVQPY 898
+ IAS+ PV WTTPL +PV QPY
Sbjct: 934 ALSAEQLERIASDGIIVSPSPVNRFKITEKKESSTDDLLAQFRATIVWTTPLRMPVAQPY 993
Query: 899 RKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
RK G +KTSLQ LT+ ++ V K+Q AFPPNF+HSLD +HM+++A+ C + GL
Sbjct: 994 RKSGTRIIKTSLQDLSLTVPERSDPVNRKKQLQAFPPNFIHSLDATHMLLSALECSELGL 1053
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+FA VHDS+WTHA D+D MNR+LR+ F+ ++E + L F+ + ++
Sbjct: 1054 SFAAVHDSFWTHAADIDSMNRVLRDSFIRIHEEDVIGRLAAEFEARYKGSIY 1105
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 127/327 (38%), Gaps = 53/327 (16%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLP--YMKSLFLGWFEPLRDAIAKEQERCR 253
Q ++E + + A +RE + + L ++ + S W L + E +
Sbjct: 357 QARLERDCIDAAVERWREENESLKKMGLNSSVSAASLNSRLYDWQLALEARLTDEMRKVE 416
Query: 254 MAKHK----------VAYAPYFD-QLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI 302
+A+ K Y P+ P+ + AV + L + G + G + A
Sbjct: 417 LAEAKPRKTPEDYDRCTYGPFLRLSTPSRLAAVTILGTLSSTAILGVDKGMP-LSAALSS 475
Query: 303 IGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPA 362
+ E+++R ++ +K K T + K R+ V K KL A
Sbjct: 476 LAKLAEEDIRAQMTVKNSKTK------------------TNKSKRRRVVQVASKSSKLDA 517
Query: 363 VRRIVKGQDDFKPWGQDARAKVGS------------RVIELLTQTAYIQSPAD--QLADA 408
VR + + + KP +D + + ++ L TA I+ + +
Sbjct: 518 VRAELGAEGEVKPLAKDTEPRADTPWPVAVKAKVAAALLSALIDTAKIKVVKEHPETKTL 577
Query: 409 PPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVK 467
PAF+HA ++ +G KK G++ N ++ ++R + + ++PM+V P
Sbjct: 578 ISQYQPAFSHA----TQLRRG--KKIGMVLLNKELVNIMKREPQGDFLAKHLPMVVKPEP 631
Query: 468 WTGYDKGAHFFLPSYVMRTHGAKQQRD 494
W+ +DKG S ++R A+ R+
Sbjct: 632 WSKFDKGGFLESTSNLVRLEIARAFRN 658
>gi|425885852|gb|ADK56281.1| putative T7-like RNA polymerase [Heterocapsa triquetra]
Length = 1106
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 291/904 (32%), Positives = 439/904 (48%), Gaps = 122/904 (13%)
Query: 193 KMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGW-------FEPLRDAI 245
+ RQ+ IE E A ++ E + ++ A + +++ W E LRD
Sbjct: 259 RRRQLVIERETLTMALRDFLEDQARLIQEGNAAAAHGSRKVWMDWVRALVEQIEALRDDD 318
Query: 246 AKEQERCRMAKHKVAYAP-YFDQLPAD--MMAVITMHKLMGLLMTG-----GEHGRARVV 297
A + + R+ + K A A LP D ++AVIT H ++ ++ E G A V
Sbjct: 319 ADNEVKARVLQGKGAKAAKLMRDLPLDAQLLAVITCHTVLNQMLVPHYRNENEPGMAPFV 378
Query: 298 QAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKK 357
+GDA+E E T+ K E + V Q + R + L K
Sbjct: 379 SLVVAVGDAVENECIYRSQELPTQAKREIR------------VLINQLQRRNSLGRLWDK 426
Query: 358 --QKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
Q +P +G+ ++++L + +Q D LA + A
Sbjct: 427 ASQTVP----------------------IGAALVDMLLEVGQVQ---DGLAPDGSGMAKA 461
Query: 416 FTHALRTVSKETKGGSKKYGVIECNPLVL-KGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
FTH L K G K LV+ E R++V + PM+VPPV W +
Sbjct: 462 FTHELVWEGKHKLCGYVKLTDRARQALVIGTDAEGLMRYLVPKHQPMVVPPVPWRPSGES 521
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLE--------PVFEALDTLGNTKWRVNNRVL 526
Y+MR+ RTP + L V +D++G+T WRVN +L
Sbjct: 522 PQG---CYLMRSV-------PFIRTPMQSLAQLRAYSPTTVARVMDSVGSTPWRVNKDIL 571
Query: 527 SVLDRIWSCGGRLADLVDRNDVPLPEKPETE---DEAQLRKWQWKVRNVKKENRERHSQR 583
+++ + +A + ++ +P P+ + E L+ + + N K+ ++ S R
Sbjct: 572 RLMEEVSQRDLAVAGVPPHHNPEVPVLPKDQGSLSEQALKDLKLRRDNAMKQCQQLASDR 631
Query: 584 CDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGK 643
LKL A+ + E Y+PHNVDFRGRAYP+ P+LNH+G D+CRG+L+FA+ + LGK
Sbjct: 632 PTFFLKLRSAQDFEHAERIYFPHNVDFRGRAYPVPPHLNHIGDDVCRGLLQFADPKPLGK 691
Query: 644 SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL--EGRRWWLKAED-P 700
GL+WLK+ + L G +K++ + R+ + + + I A+ PL E ++W +A+D P
Sbjct: 692 DGLYWLKVTICGLL--GKNKITFDARVEYIDGLKELIIAVAEDPLAEEHLKFWAEADDGP 749
Query: 701 FQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK 760
+Q LA C L A +S PE+F+S P+H DG+CNGLQHYAALGRD G AVNL ++
Sbjct: 750 WQTLARCQELAAAWKSGDPESFMSAQPIHLDGTCNGLQHYAALGRDEAGGHAVNLTPSDR 809
Query: 761 PADVYSGIAARVLVIIQRDAQRDPAVFPDALRA--------------------------- 793
P DVY+ + V ++R+A P A++
Sbjct: 810 PQDVYTIVLGVVTEKVEREAN------PVAVKGGKPKGNAADAEAEEAVDAKLEETRQLA 863
Query: 794 --KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAK 850
+ L + RK+VKQTVMT YGVT IGA QI+ +L++ G + +L + Y K
Sbjct: 864 VQAIELGVLQRKVVKQTVMTICYGVTKIGAIAQIQGQLEDMCGDKVSSKDLKPLARYLTK 923
Query: 851 VTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
L+++ E+F+ A I W + +KI+ P W +P+GL QPY+K V T L
Sbjct: 924 HVLSSIDEVFEQAMEIKRWFDKVSKIMNGLEVPTSWVSPIGLACAQPYKKSKSVQVLTKL 983
Query: 911 QILTLQRETEKVMVKR--QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
Q +++ +E + V + QR FPPNF+HSLD SHMMMTA CR+ G+ FAGVHDS+WTH
Sbjct: 984 QKVSI-KEADGTFVNKAKQRMGFPPNFIHSLDASHMMMTADGCRRDGILFAGVHDSFWTH 1042
Query: 969 ACDVDEMNRILREKFVELYEMPIFENLLDSF--QKSFPKLVFPPLPERGDFDLREVLGSP 1026
ACD +NR++RE FVEL+ P+ E L P LP++G DL V S
Sbjct: 1043 ACDAPTLNRLIREAFVELHGRPVLEELRRDLCVHVGAAGEDPPELPKQGSLDLSLVHQSK 1102
Query: 1027 YFFN 1030
Y F
Sbjct: 1103 YIFG 1106
>gi|307214460|gb|EFN89497.1| DNA-directed RNA polymerase, mitochondrial [Harpegnathos saltator]
Length = 1166
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/476 (43%), Positives = 294/476 (61%), Gaps = 33/476 (6%)
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+++ E +S CD KLS+A +D+ F+ PHN+DFRGRAYP+ P+L HL SDL R
Sbjct: 706 RRKKNEMYSLWCDCLYKLSLANHFRDQ-VFWLPHNLDFRGRAYPVAPHLTHLTSDLGRSF 764
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FA+ + LG GL WLKIH NL G + + RL F LD I DSA PL+G+R
Sbjct: 765 LVFAQKKPLGPKGLDWLKIHAINL-TGMKKREPMKKRLEFANEILDLIIDSARNPLKGKR 823
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WW ++++P+Q LA C + AL+S +PE +++ PVHQDGSCNGLQHYAALGRD +GA +
Sbjct: 824 WWTESDEPWQTLAACKEIDNALQSPNPEEYLTGFPVHQDGSCNGLQHYAALGRDQIGAES 883
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
VNL + P DVYS + V ++DA+ + AK+L + RK++KQT+MT+
Sbjct: 884 VNLYPSDTPQDVYSVVVGMVEEFRKKDAENGVEI------AKVLEGHISRKVIKQTIMTT 937
Query: 813 VYGVTYIGARDQIKRRLKE-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
VYGVT GA+ QI R+L + + P E ++ S Y + T +L MF +A+ I W
Sbjct: 938 VYGVTKFGAKLQITRQLSDMKDFPQE--YIWNGSMYLVQQTFRSLQTMFTSAKEIQDWFT 995
Query: 872 ECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTA 930
+CA++I++ NQ V+W TPLGLPV+QPY K R T+ + +Q++ + + +Q+ A
Sbjct: 996 DCARVISTRCNQYVQWVTPLGLPVLQPYNK--RFKTTTATNVSKIQKKPDTM---KQKNA 1050
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
FPPNF+HSLD HMM+T++ C +AG+TF VHD +WTH V+ M++I RE+FV L+ P
Sbjct: 1051 FPPNFIHSLDSCHMMLTSLHCEQAGITFMSVHDCFWTHPQSVEIMSKICREQFVALHCEP 1110
Query: 991 IFENLLDSFQKSFPK----------------LVFPPLPERGDFDLREVLGSPYFFN 1030
I E+L F + K VF LP +G FD+ +VL S YFF+
Sbjct: 1111 ILEDLSQFFHNRYVKHLMNDRIMNRKEDLSLQVFKKLPTKGKFDINKVLSSQYFFS 1166
>gi|193203364|ref|NP_001122531.1| Protein Y105E8A.23, isoform a [Caenorhabditis elegans]
gi|148879470|emb|CAD21670.3| Protein Y105E8A.23, isoform a [Caenorhabditis elegans]
Length = 1138
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 239/652 (36%), Positives = 347/652 (53%), Gaps = 64/652 (9%)
Query: 422 TVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPS 481
++S+ SK G+ + NP + +PM+VPP W G + S
Sbjct: 508 SLSRMLSINSKLMGLFDKNPFNFIVFSTSN-------LPMIVPPRPWIDRGTGGPLYTTS 560
Query: 482 Y------VMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+M + + R T + Q PVF+AL+ LG+T W +N +L VL ++
Sbjct: 561 QHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDALNQLGSTPWVINEPMLDVLKDVFG 620
Query: 535 CGGRLAD--LVDRNDVPL-------PE---------KPETEDEAQLRKWQWKVRNVKKEN 576
G L+++ ++P+ P+ K E D + R + K K
Sbjct: 621 RSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIKKEDVDVEKFRSYAKKKAEAIKMR 680
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
E +S C ++ ++ +A + + ++PHN+DFRGR YP+ PYL+H+G D+ R IL+FA
Sbjct: 681 NESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGRVYPLSPYLSHMGDDVNRCILKFA 739
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+ + LG+ G WLK+H NL G + + S R+ E + + DSA PL G++WW+
Sbjct: 740 KSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEAERLIPLMLDSARDPLNGQKWWMS 798
Query: 697 AEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
+++P+Q LA C+ + A R S F S +P+HQDGSCNGLQHYAALGRD G VNL
Sbjct: 799 SDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDGSCNGLQHYAALGRDNEGGVQVNL 858
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ-VDRKLVKQTVMTSVY 814
+ P DVYS +A RV Q+D Q + A + + L Q V RK++KQTVMT+VY
Sbjct: 859 TQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVY 918
Query: 815 GVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
GVT GA QIKR+LK P E+A +F Y A+ T +L + F ++ + W A
Sbjct: 919 GVTMYGAVLQIKRQLKAMDIPGEDAAIFAR--YLARKTFASLNDAFTSSMALKDWFRLIA 976
Query: 875 KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPN 934
K + + V W TPLGLPVVQPY KL K L + + +Q AFPPN
Sbjct: 977 KGSSDLMKTVEWITPLGLPVVQPYCKLVERKGKLILAPVPM----------KQVDAFPPN 1026
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
FVHSLD +HMM+T++ C + G+TFA VHD +WTHA VD+MN I R++FV L+ PI E
Sbjct: 1027 FVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQ 1086
Query: 995 LLDSFQKSF--PKL--------------VFPPLPERGDFDLREVLGSPYFFN 1030
+ F+K++ PK+ +F E GD D+ +V S YFF+
Sbjct: 1087 CSEWFKKTYLTPKMAKILPEKDFQKYSEIFTANIEHGDLDIEKVKDSVYFFS 1138
>gi|68070003|ref|XP_676913.1| DNA-dependent RNA polymerase [Plasmodium berghei strain ANKA]
gi|56496821|emb|CAH94868.1| DNA-dependent RNA polymerase, putative [Plasmodium berghei]
Length = 845
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 220/615 (35%), Positives = 338/615 (54%), Gaps = 27/615 (4%)
Query: 434 YGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
YGVI L A H+ + Y+PM+ P KW D+G L + +R +
Sbjct: 238 YGVIHMRESCANFLLNNAINSHVPLNYLPMICKPKKWEN-DQGGMLLLKNNFIRYNIKPL 296
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
V + + + +GN W+VN +L ++ + G + + + LP
Sbjct: 297 FNLNVCNMSR-----IKNIVSEIGNVGWKVNKEILHYIEYAYMNGKTIGKIPLNKNYNLP 351
Query: 552 EKPETEDEAQLRKWQWKVRNVKKE----NRERHSQRCDIELKLSVARKMKDEEGFYYPHN 607
+ + + K +K+E N+ S+R KL+VA+ K+ E Y+PHN
Sbjct: 352 YNIDLKKNNNNNEEIKKFYLLKEEITRLNKCLISERPTFLQKLAVAKTFKENEQIYFPHN 411
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
+DFRGR YP+ P+L+H+G D+CR ++ F+ G +G +GL+WLK+HLAN + G DKL+ +
Sbjct: 412 IDFRGRMYPLSPHLHHMGDDICRSLIVFSNGEEIGPNGLYWLKVHLANNF--GKDKLNFK 469
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIP 727
R+ + + ++++I ++ P E +W A++P+Q LAV I+L AL SS P + S++P
Sbjct: 470 KRIEWVDQNINNIKKLSENPFENLEFWGLADNPWQALAVSIDLINALNSSDPSKYKSNMP 529
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA-----QR 782
+ QDG+CNGLQHYAALG+D G AVN++ ++P D+Y+ + V+ I+ D +
Sbjct: 530 IQQDGTCNGLQHYAALGKDKDGGRAVNILPSDEPQDIYTVVLDIVISKIKNDMDNGGNKN 589
Query: 783 DPAVF---PDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP-MEE 838
+ F + + + RK+VKQT+MT YGVT IGA++Q+K +++ A ++
Sbjct: 590 ESTNFLNKSELANYCFKYNLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQNMIAKDTDK 649
Query: 839 AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPY 898
+ S Y A ++ E+F+ A I W +K+ N P+ W +P+GLP QPY
Sbjct: 650 NTINELSKYIANYIFESISEIFKRAMIIKKWFNNLSKVTNDLNIPITWISPIGLPCEQPY 709
Query: 899 RKLGRHTVKTSLQILTLQRETEKVMVK-RQRTAFPPNFVHSLDGSHMMMTAVACR-KAGL 956
R R V T LQ +++ ++ K +QR FPPNFVHSLD SH++MTA K
Sbjct: 710 RLGTRILVNTPLQSVSVTSYKNSLLHKNKQRLGFPPNFVHSLDASHLIMTAEKMLIKNNF 769
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPER 1014
+FA VHDSYWTHAC+VD MN+ +R+ FV LY PI EN+ +FQ K PP PE+
Sbjct: 770 SFAAVHDSYWTHACNVDIMNKFIRDSFVTLYNKPILENIYQNFQMRLGKYAEKIPPPPEQ 829
Query: 1015 GDFDLREVLGSPYFF 1029
G D+ V S YFF
Sbjct: 830 GYLDISLVRDSKYFF 844
>gi|82706057|ref|XP_727223.1| DNA-dependent RNA polymerase [Plasmodium yoelii yoelii 17XNL]
gi|23482964|gb|EAA18788.1| DNA-dependent RNA polymerase-related [Plasmodium yoelii yoelii]
Length = 697
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/615 (35%), Positives = 338/615 (54%), Gaps = 27/615 (4%)
Query: 434 YGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
YGVI L A H+ + Y+PM+ P KW D+G L + +R +
Sbjct: 90 YGVIHMRESCANFLLNNAINSHVPLNYLPMICKPKKWEN-DQGGMLLLKNNFIRYNIKPL 148
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
V + + + +GN W+VN +L ++ + G + + + LP
Sbjct: 149 FNLNVC-----DMSRIKNIVSEIGNVGWKVNKEILHYIEYAYMNGKTIGKIPLNKNYNLP 203
Query: 552 EKPETEDEAQLRKWQWKVRNVKKE----NRERHSQRCDIELKLSVARKMKDEEGFYYPHN 607
+ ++ + K +K+E N+ S+R KL+VA+ K E Y+PHN
Sbjct: 204 NNIDLKNNNNNNEEIKKYYLLKEEITRLNKCLISERPTFLQKLAVAKTFKKNEQIYFPHN 263
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
+DFRGR YP+ P+L+H+G D+CR ++ F+ G +G +GL+WLK+HLAN + G DKL+ +
Sbjct: 264 IDFRGRMYPLSPHLHHMGDDICRSLIVFSNGEEIGPNGLYWLKVHLANNF--GKDKLNFK 321
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIP 727
R+ + + ++++I + P E +W A++P+Q LAV I+L AL SS+P + S+IP
Sbjct: 322 KRIEWVDQNINNIKKLKENPFENLEFWGLADNPWQALAVSIDLINALNSSNPSKYKSNIP 381
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA------Q 781
+ QDG+CNGLQHYAALG+D G AVN++ ++P D+Y+ + V+ I+ D
Sbjct: 382 IQQDGTCNGLQHYAALGKDKDGGRAVNILPSDEPQDIYTVVLDIVINKIKNDIDNGDNKN 441
Query: 782 RDPAVFPDALRAKLLL--SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP-MEE 838
+ + + A + + RK+VKQT+MT YGVT IGA++Q+K +++ A ++
Sbjct: 442 ENTNILTKSELANYCFKYNLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQNMIAKDTDK 501
Query: 839 AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPY 898
+ S Y A ++ E+F+ A I W +KI N P+ W +P+GLP QPY
Sbjct: 502 NTINELSRYIANYIFESISEIFKRAMIIKKWFNNLSKITNDLNIPITWISPIGLPCEQPY 561
Query: 899 RKLGRHTVKTSLQILTLQRETEKVMVK-RQRTAFPPNFVHSLDGSHMMMTAVACR-KAGL 956
R R V T LQ +++ ++ K +QR FPPNFVHSLD SH++MTA +
Sbjct: 562 RLGTRILVNTPLQSVSVTSYKNSLIHKNKQRLGFPPNFVHSLDASHLIMTAEKMLIQNNF 621
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPER 1014
+FA VHDSYWTHAC+VD MN+ +R+ FV LY PI EN+ +FQ K PP PE+
Sbjct: 622 SFAAVHDSYWTHACNVDIMNKFIRDSFVTLYNKPILENIYQNFQMRLGKFAEKIPPPPEQ 681
Query: 1015 GDFDLREVLGSPYFF 1029
G D+ V S YFF
Sbjct: 682 GHLDISLVRHSQYFF 696
>gi|299740865|ref|XP_001834061.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404445|gb|EAU87753.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1341
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 245/681 (35%), Positives = 370/681 (54%), Gaps = 60/681 (8%)
Query: 230 MKSLFLGWFEPLRDAIAK-----EQERCR---MAKHKVAYAPYFDQLPADMMAVITMHKL 281
++ + GW E L+ +A+ E+E K K APY + + +++IT+ +
Sbjct: 383 LQEMMYGWHEKLKKRVAELVSQIEKEEAAGKYRLKPKAELAPYLALVQPERLSMITILEA 442
Query: 282 MGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVT 341
M L +GG + +A IG A+E E + + +KN + D
Sbjct: 443 MRLCGSGGVASGMKSTRALVSIGKAVEME-----YKARVCRKNRIVIPDVSRPDT----- 492
Query: 342 TEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSP 401
Q+ + +++L A +++ G+ PW Q RA++G+ ++E+L Q A +
Sbjct: 493 --QDVFSSLGYSNLHERRLAAAKQMTAGESWTAPWSQTTRAQIGALLMEVLMQVATVPQT 550
Query: 402 A--DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP-- 457
A ++ + + PAF H S E G+K GVI+ N V + + + I
Sbjct: 551 AVNEETGEVLTEEHPAFFH-----SYEYMRGTK-LGVIKVNHAVSERIAKDVLKGTIHPR 604
Query: 458 YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGN 516
++PML PP W ++G + + + +MR +Q + +K +E V L+ LG
Sbjct: 605 HLPMLHPPKPWVRANEGGYLYTKTPLMRYKECVEQEKYLHEAIRKGNMEAVMAGLNVLGR 664
Query: 517 TKWRVNNRVLSVLDRIWSCGGRLADL----VDRNDVPLPEKPETEDEAQL------RKWQ 566
T W++N ++ V+ IW+ G + L +D + P + E + A+ ++W
Sbjct: 665 TPWKINKKIFDVVLTIWNSGEGVGKLPPAKLDEPEPQPPPEGENDVRARAIYLQHHKQWS 724
Query: 567 WKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGS 626
V N HS+RC K+ +AR DE Y+PHN+DFRGRAYP+ P+LNH+G
Sbjct: 725 QNVAN-------NHSERCSTNYKIEIARAFLDET-IYFPHNLDFRGRAYPLPPHLNHIGD 776
Query: 627 DLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADK 686
DL RG+L F E + LG+ GL W+KIHLANLY G DK + R+ + + LDDI DSA
Sbjct: 777 DLSRGLLLFQEAKPLGERGLRWMKIHLANLY--GFDKADFDERVHWVHDRLDDIKDSAKN 834
Query: 687 PLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRD 746
PL GR WW KA+DPFQCLA C+ LTEAL S P + S +PVHQDG+CNGLQHYAA+G D
Sbjct: 835 PLTGRGWWKKADDPFQCLATCMELTEALESPDPLAYKSCLPVHQDGTCNGLQHYAAMGGD 894
Query: 747 TLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVK 806
GA VNL A ++P+DVY+ + +V ++ DA + D L A+LL ++ RK+VK
Sbjct: 895 AQGAQQVNLAASDRPSDVYTFVGNKVDKLVNEDAAKG-----DRL-AQLLQGKITRKVVK 948
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERG-APMEEAELFGASCYAAKVTLTALGEMFQAARG 865
QTVMT+VYGVT++GARDQI+ +L +RG P+EE + + Y AK L +G+ F AR
Sbjct: 949 QTVMTTVYGVTFVGARDQIEGQLIDRGDIPLEEC--WNVAGYLAKKVLHCIGDTFHGARS 1006
Query: 866 IMSWLGECAKIIASENQPVRW 886
I +WL CA++I+ P R+
Sbjct: 1007 IQNWLNLCARLISKSVSPDRF 1027
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 91/141 (64%), Gaps = 3/141 (2%)
Query: 872 ECAKIIASENQ-PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQR 928
+ AK+I E V WTT LGLPVVQPYRK R + T++Q + + +V +Q
Sbjct: 1075 DVAKLIKKEQMTSVIWTTALGLPVVQPYRKTSRKQIMTNIQSVFISDPNIPNEVNAVKQA 1134
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
+AFPPNFVHSLD +HM+++A+ C LTFA VHDSYWTHACDVD M+ I+R+ F+EL+
Sbjct: 1135 SAFPPNFVHSLDATHMLLSALECNNQKLTFASVHDSYWTHACDVDAMSEIIRDTFIELHS 1194
Query: 989 MPIFENLLDSFQKSFPKLVFP 1009
+ L + F++ + + P
Sbjct: 1195 TDVLGRLYNEFKQRYKGYLIP 1215
>gi|443730014|gb|ELU15709.1| hypothetical protein CAPTEDRAFT_156688 [Capitella teleta]
Length = 601
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 241/622 (38%), Positives = 332/622 (53%), Gaps = 59/622 (9%)
Query: 443 VLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKR 498
VL L RTA+ + + +P ++PPV WT + GA F ++R H +RDT+
Sbjct: 5 VLCMLFRTAKLKQVTFSPIELPSVIPPVPWTSHKHGADIFSTVELIR-HADDVRRDTLLS 63
Query: 499 TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRNDVPLPEKPET 556
TP +++ P +AL+T+G W +N +VL V+ ++ GG +L +D+PLP K +
Sbjct: 64 TPLQKVLPTLDALNTVGACPWIINKKVLDVMVEVFKTGGSEQLDVPCSIHDIPLPPKIHS 123
Query: 557 EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYP 616
W V S D +S R +K ++ P R +
Sbjct: 124 ----------WCPAAVWHRLLLEGSIAVDFSSNVSKCRNVKQQKEKNSPVEKSLRSDVWT 173
Query: 617 M---------HPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS-H 666
+ P + GSDL RGI+ F +G+ LG SGL WLKIH NL G+ K S +
Sbjct: 174 LLTSMSLKSTFPAVEVPGSDLSRGIMVFGQGKPLGASGLDWLKIHCINL--TGLKKRSPN 231
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
RLA+ +DDI DSA++PL GR WW A++P+Q LA C+ + A +S P F+SH+
Sbjct: 232 SERLAYANEVMDDILDSAERPLSGRGWWKDADEPWQTLATCMEIAAASQSPDPSAFVSHL 291
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
PVHQDGSCNGLQHYAALGRD GA ++NL + P DVYS + V + DA + +
Sbjct: 292 PVHQDGSCNGLQHYAALGRDVEGAKSINLHPMDTPRDVYSDVVELVESVRADDAMKGNEI 351
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-RGAPMEEAELFGAS 845
AK+L + RK++KQT+MT+VYGVT GAR QI+ +L++ P E A
Sbjct: 352 ------AKVLEGHIQRKVIKQTIMTTVYGVTIYGARKQIQGQLEDLETFPQEHVS--AAK 403
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS-ENQPVRWTTPLGLPVVQPYRKLGRH 904
Y TL++L +MF +AR I W A ++ V W TPLG PVVQ Y
Sbjct: 404 NYLTAKTLSSLEQMFTSARQIQDWFVLMAMLVTRVRGNLVSWRTPLGWPVVQYYASHNHT 463
Query: 905 TVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
K S + L + ++Q AFPPNF+HSLD SHMM+TAV C++ G+TFA VHD
Sbjct: 464 FSKLSGEKALLVKPKS----RKQMNAFPPNFIHSLDASHMMLTAVHCQRKGITFASVHDC 519
Query: 965 YWTHACDVDEMNRILREKFVELYEMPIFENL--LDSFQKSFP--------------KLVF 1008
+WTH C + MN+I RE+FV L+ PI E L L S Q F V
Sbjct: 520 FWTHPCHIPVMNKICREQFVSLHNYPILEELSELMSEQHGFHINETGEVAELKKVFNYVL 579
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
+PERG+F+L VL S YFF+
Sbjct: 580 TRVPERGEFELENVLDSTYFFS 601
>gi|119581581|gb|EAW61177.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Homo
sapiens]
Length = 1021
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/540 (41%), Positives = 319/540 (59%), Gaps = 35/540 (6%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 457 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 507
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 508 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 567
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 568 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 627
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ ++ + +K RE HS R + +LS+A+ ++D
Sbjct: 628 SEAPQPPEAHLPHSAAPARKAELRR---ELAHCQKVAREMHSLRAEALYRLSLAQHLRDR 684
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 685 -VFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 742
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 743 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 802
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 803 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 862
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 863 AQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 916
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 917 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 975
>gi|193203366|ref|NP_001122532.1| Protein Y105E8A.23, isoform b [Caenorhabditis elegans]
gi|148879471|emb|CAN99761.1| Protein Y105E8A.23, isoform b [Caenorhabditis elegans]
Length = 1156
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 241/668 (36%), Positives = 349/668 (52%), Gaps = 78/668 (11%)
Query: 422 TVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPS 481
++S+ SK G+ + NP + +PM+VPP W G + S
Sbjct: 508 SLSRMLSINSKLMGLFDKNPFNFIVFSTSN-------LPMIVPPRPWIDRGTGGPLYTTS 560
Query: 482 Y------VMRTHGAKQQRDTVKR-TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+M + + R T + Q PVF+AL+ LG+T W +N +L VL ++
Sbjct: 561 QHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDALNQLGSTPWVINEPMLDVLKDVFG 620
Query: 535 CGGRLAD--LVDRNDVPL-------PE---------KPETEDEAQLRKWQWKVRNVKKEN 576
G L+++ ++P+ P+ K E D + R + K K
Sbjct: 621 RSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIKKEDVDVEKFRSYAKKKAEAIKMR 680
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
E +S C ++ ++ +A + + ++PHN+DFRGR YP+ PYL+H+G D+ R IL+FA
Sbjct: 681 NESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGRVYPLSPYLSHMGDDVNRCILKFA 739
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+ + LG+ G WLK+H NL G + + S R+ E + + DSA PL G++WW+
Sbjct: 740 KSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEAERLIPLMLDSARDPLNGQKWWMS 798
Query: 697 AEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
+++P+Q LA C+ + A R S F S +P+HQDGSCNGLQHYAALGRD G VNL
Sbjct: 799 SDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDGSCNGLQHYAALGRDNEGGVQVNL 858
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ-VDRKLVKQTVMTSVY 814
+ P DVYS +A RV Q+D Q + A + + L Q V RK++KQTVMT+VY
Sbjct: 859 TQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVY 918
Query: 815 GVTYIGARDQIKRRLKERGAPMEEAELFG--------ASC--------YAAKVTLTALGE 858
GVT GA QIKR+LK P E+A +F AS Y A+ T +L +
Sbjct: 919 GVTMYGAVLQIKRQLKAMDIPGEDAAIFARYLARKTFASLNDAAIFARYLARKTFASLND 978
Query: 859 MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE 918
F ++ + W AK + + V W TPLGLPVVQPY KL K L + +
Sbjct: 979 AFTSSMALKDWFRLIAKGSSDLMKTVEWITPLGLPVVQPYCKLVERKGKLILAPVPM--- 1035
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
+Q AFPPNFVHSLD +HMM+T++ C + G+TFA VHD +WTHA VD+MN I
Sbjct: 1036 -------KQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEI 1088
Query: 979 LREKFVELYEMPIFENLLDSFQKSF--PKL--------------VFPPLPERGDFDLREV 1022
R++FV L+ PI E + F+K++ PK+ +F E GD D+ +V
Sbjct: 1089 CRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPEKDFQKYSEIFTANIEHGDLDIEKV 1148
Query: 1023 LGSPYFFN 1030
S YFF+
Sbjct: 1149 KDSVYFFS 1156
>gi|221056236|ref|XP_002259256.1| dna-dependent rna polymerase [Plasmodium knowlesi strain H]
gi|193809327|emb|CAQ40029.1| dna-dependent rna polymerase, putative [Plasmodium knowlesi strain H]
Length = 1348
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/637 (34%), Positives = 339/637 (53%), Gaps = 49/637 (7%)
Query: 434 YGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
YGVI L A H+ + ++PM+ P KWT + +G L + +R +
Sbjct: 719 YGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKWT-HAEGGMILLKNNFIRCNVKPL 777
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
V LE + + +GN +W++N +L++++ ++ G + ++ + + LP
Sbjct: 778 FNIDVC-----NLERIKNIVSQIGNVRWKINEEILNLIEYAYAQGITIGNIPRKQNYDLP 832
Query: 552 EKPET---EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
P +D ++K+ + + N+ S+R K++VA+ +K+ E Y+PHN+
Sbjct: 833 NGPSDMGRKDVEDIKKYYLLKEEISRLNKCLISERPTFLQKIAVAKTLKNCEMIYFPHNI 892
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGR YP+ P+L+H+ D+CR ++ F + +G GL WLKIHL+N + G DKL+ E
Sbjct: 893 DFRGRMYPLSPHLHHMSDDICRSLITFHDKEEIGPRGLFWLKIHLSNNF--GKDKLNFEE 950
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
R+ + +++LD+I ++ P E +W AE P+Q L+V ++LT AL P + S+IP+
Sbjct: 951 RIKWVDDNLDNIKKLSENPFEHLDFWNMAEKPWQALSVSMDLTRALECPDPSKYRSNIPI 1010
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD--------- 779
QDG+CNGLQHYAALGRD G AVN++ ++P D+Y+ + V I D
Sbjct: 1011 QQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTVVLEIVKSKISADLDGTATPTT 1070
Query: 780 ----------------------AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVT 817
A PA + + + RK+VKQT+MT YGVT
Sbjct: 1071 MGPTNSTSGSINSINSGNGGNAAMSTPACRGELAKYCFKYDLLKRKVVKQTIMTICYGVT 1130
Query: 818 YIGARDQIKRRLKERGAPMEEAELFGA-SCYAAKVTLTALGEMFQAARGIMSWLGECAKI 876
+GA+DQ+K +++ + + + + S Y A ++ E+F+ A I W +K+
Sbjct: 1131 SVGAKDQVKGKIQNMISKVLDKNIINQLSQYIANYIFESISEIFKRAMIIKKWFNNLSKV 1190
Query: 877 IASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK-RQRTAFPPNF 935
N PV W +P+GLP QPYR R V T LQ +++ ++ K +QR FPPNF
Sbjct: 1191 TNELNIPVTWLSPIGLPCEQPYRLGQRILVNTPLQSVSVISYKNSLLHKNKQRLGFPPNF 1250
Query: 936 VHSLDGSHMMMTA-VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
VHSLD SH+MMTA + +FA VHDSYW HAC+VD MN+ +R+ FV LY PI +N
Sbjct: 1251 VHSLDASHLMMTAEKMILENNFSFAAVHDSYWAHACNVDLMNKFIRDSFVTLYNEPILQN 1310
Query: 995 LLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFF 1029
L S+Q K P PE+G D+ V S YFF
Sbjct: 1311 LYQSYQMRLGKYASRIPAPPEQGHLDVSLVRNSRYFF 1347
>gi|156341453|ref|XP_001620765.1| hypothetical protein NEMVEDRAFT_v1g176655 [Nematostella vectensis]
gi|156206078|gb|EDO28665.1| predicted protein [Nematostella vectensis]
Length = 417
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/421 (47%), Positives = 270/421 (64%), Gaps = 13/421 (3%)
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
KLSVA +D F+ P N+DFRGR YP+ P+ H+G DL RG+L+FAEG LG GL W
Sbjct: 6 KLSVANHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVGDDLSRGMLQFAEGVPLGPDGLRW 64
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIHLANLY G K S + R+ +T+ + ++ DSAD PL G RWW+ ++P+Q LA C+
Sbjct: 65 LKIHLANLY-GAKKKSSLDERVEYTDQMMPEVLDSADNPLTGARWWMHGDEPWQVLATCM 123
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
+ +A+RS P ++SH PVHQDGSCNGLQHYAALG D GA VNL+ ++P DVY+ +
Sbjct: 124 EIAKAVRSPDPAQYVSHQPVHQDGSCNGLQHYAALGHDRYGARQVNLIPADRPQDVYAEV 183
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V DA++ + A LL +V R++VKQTVMT VYGVT++G R QI+R+
Sbjct: 184 AKLVEEARLHDAEQGHRI------ATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQ 237
Query: 829 LKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTT 888
LK+ ++E LF AS Y ++G+MF A+ I W A IA V W T
Sbjct: 238 LKDLD--LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWFALSATHIAYTGHCVDWYT 295
Query: 889 PLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV---KRQRTAFPPNFVHSLDGSHMM 945
PL L V QPY K T+KT LQ + + + + V ++QR AFPPNFVHSLD +HMM
Sbjct: 296 PLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMM 355
Query: 946 MTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPK 1005
+TAV C++AG+ FA VHDS+WTHA +D MNR+ RE+FV L+ PI ++L F ++
Sbjct: 356 LTAVHCQRAGINFASVHDSFWTHAAHIDIMNRLCREQFVSLHTQPILQDLQAHFVDNYGG 415
Query: 1006 L 1006
L
Sbjct: 416 L 416
>gi|71033709|ref|XP_766496.1| DNA-directed RNA polymerase [Theileria parva strain Muguga]
gi|68353453|gb|EAN34213.1| DNA-directed RNA polymerase, putative [Theileria parva]
Length = 1225
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/642 (35%), Positives = 340/642 (52%), Gaps = 52/642 (8%)
Query: 415 AFTHALRTVSKETKGGSKKYGVIEC-NPLVLKGLERTARHMV-IPYMPMLVPPVKWTGYD 472
AF H L + G K +GV+E +L+ + A+ +V + +PM+ P KW
Sbjct: 608 AFRHVL------LRQGVKTFGVLEMRESCMLQLRDFVAKSLVSLAALPMVCRPKKWINAT 661
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
G L +R G+K V LE VF+ ++ W +N+++L ++ I
Sbjct: 662 TGGSILLKHNFIR--GSKLNEVKVY-----NLENVFDIVNKFSQVPWIINSQMLKLIKHI 714
Query: 533 WSCGGRLADLVDRNDVPLPEK-PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
C + D+P+ + P + + + N+ + S+ ++
Sbjct: 715 --CNSQ-------TDMPIKQHLPVNTNINLMENINTTISNITSLSSNELSELSLFLRRIK 765
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+A +E Y P N+DFRGR YP+ PYLNH+ DLCR +L F+E R LG GL WLK+
Sbjct: 766 IADAFANERRLYMPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSEKRKLGNRGLFWLKV 825
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE--GRRWWLKAEDPFQCLAVCIN 709
H +N+Y G DK+S E R+ + + H+ I + P + + +W+KA+ PFQ A C+
Sbjct: 826 HSSNMY--GNDKISFEDRVKWVDEHISIITELVKSPFKDFNQNFWVKADKPFQFFASCVE 883
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L A+ S++PE +++H+P+ QDG+CNGLQHYAALG D GA VNLV E P D+Y+ I
Sbjct: 884 LVRAIESNNPEDYMTHLPIQQDGTCNGLQHYAALGLDEKGAKYVNLVDCEHPQDLYTHIL 943
Query: 770 ARVLVIIQRDAQ--RDPAVFPDAL--RAKLLLSQVD----------------RKLVKQTV 809
++ + D V ++L LS V+ RK++KQTV
Sbjct: 944 QLIIQKVYNDLNYTSGSGVSNNSLVTTGNGKLSNVESNKKYSEICVNNNILCRKVIKQTV 1003
Query: 810 MTSVYGVTYIGARDQIKRRLKE--RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIM 867
MT YGVT IGA DQ++ +LK+ + + + +EL G + Y A L+++ +F A I
Sbjct: 1004 MTICYGVTRIGAIDQVESKLKDIKKISYLSPSELRGLAAYLANKILSSISTIFSEAMSIK 1063
Query: 868 SWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQ 927
+WL E + + N PV W +P+GLP QPY K V+T LQ + + + V +RQ
Sbjct: 1064 NWLDEISCVHNKFNIPVTWISPIGLPCEQPYCKSVTKVVRTPLQAINVSKYVSSVDKRRQ 1123
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+ AFPPNF+HSLD SH+MMTA K +FA VHDSYW H VD M+ +R +F ++
Sbjct: 1124 KLAFPPNFIHSLDASHLMMTATEVFKHTQSFASVHDSYWIHPDKVDMMHTYIRNEFFNMH 1183
Query: 988 EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
PI ++L S ++ F P P++G+F+L VL S YFF
Sbjct: 1184 TKPILDDLHKSVLNKL-QINFRPPPKKGNFNLEHVLDSKYFF 1224
>gi|401412922|ref|XP_003885908.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
gi|325120328|emb|CBZ55882.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
Length = 2032
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 232/587 (39%), Positives = 320/587 (54%), Gaps = 74/587 (12%)
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK------ 564
+ LG WR+N VLSV++ W G + L R+ L E+ QLRK
Sbjct: 1453 VSALGAQAWRINKDVLSVMEAAWQRGLEIGRLPPRDSAAL-----DEEILQLRKVATDPG 1507
Query: 565 ----------WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRA 614
++R++ ++ + S+R LKL VA ++ + Y+PHN+DFRGR
Sbjct: 1508 AGAASGASSAASIRLRHLLQQAGKLQSERPSFLLKLQVASCFQNLDAVYFPHNIDFRGRC 1567
Query: 615 YPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE 674
YP+ P+LNH+G D+CR +L FAE + LG +GL WLK+H+ANL+ GV+K+S R A+ +
Sbjct: 1568 YPLPPHLNHMGDDICRSLLVFAEPKPLGPNGLGWLKVHIANLF--GVNKVSFADRQAWVD 1625
Query: 675 NHLDDIFDSADKPLEGRRWWL---KAEDPFQCLAVCINLTEALRSSSPET--FISHIPVH 729
LD + AD PL R L +A+DP+Q L+ + L + L + + F+S +P+H
Sbjct: 1626 ARLDQLLQVADDPLNPRSLHLLDQEADDPWQALSALLELKKVLAHGAENSAQFLSRLPIH 1685
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA---- 785
QDGSCNGLQHYAALGRD G AVNLV EKP DVYS + V + DA R P
Sbjct: 1686 QDGSCNGLQHYAALGRDRRGGEAVNLVGGEKPRDVYSFVLEVVKQRVHADAARGPGPEGL 1745
Query: 786 VFPDALRAKLLLSQ--VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELF 842
P+ A LL+ + RK+VKQTVMT YGVT IGARDQ+ R+L++ G ++EA L
Sbjct: 1746 APPEKRLAGLLMHHNLLQRKVVKQTVMTICYGVTAIGARDQVTRQLEDLIGETVDEATLK 1805
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL-GLPVVQPYRKL 901
Y ++V L+++GE+FQ+A + WL E +K++ PV W PL QPYR
Sbjct: 1806 SLGGYLSRVVLSSIGEVFQSAMRLKKWLDEVSKMLNRLGLPVAWMLPLVQFGAEQPYRSG 1865
Query: 902 GRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA----------- 948
V+T LQ I+ + E +QR FPPNF+HSLD +HMM+TA
Sbjct: 1866 KALEVRTVLQTHIVRVAGEDTPTSASKQRLGFPPNFIHSLDATHMMLTARRCLLRRPPPL 1925
Query: 949 ----------------VACRKA-------GLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
AC +A + FA VHDSYWTHA DVD M +LR++FV
Sbjct: 1926 VPPSFSGAAGAGPGAWTACAEAENESDWRPMAFAAVHDSYWTHAGDVDRMRTVLRQEFVR 1985
Query: 986 LYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
LY PI E + + ++ PP P +G D+ EVL S YFF+
Sbjct: 1986 LYSQPILEEFYEGLRARLGRVADDLPPPPSKGTLDINEVLHSDYFFH 2032
>gi|391337781|ref|XP_003743243.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Metaseiulus occidentalis]
Length = 1126
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/558 (37%), Positives = 318/558 (56%), Gaps = 24/558 (4%)
Query: 453 HMVIPYMPMLVPPVKWTGYDKGAHFF--LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 510
H +PML PP WT + + +P + + + +Q ++ +P + + P +A
Sbjct: 551 HFDATSLPMLCPPKPWTRPEDTPYMISGVPLIRIPSEFSNKQMSAIRESPPENIYPALDA 610
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE--TEDEAQLRKWQWK 568
L+ LG T W+VNN +L VL ++ G + ++ +P+KP T+ E K + +
Sbjct: 611 LNALGRTPWKVNNPILDVLTTVFLGEGDM-------ELSVPKKPSNMTKPEPSAHKARVQ 663
Query: 569 VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDL 628
+++ E+++ CD KLS+A K++ F++PHN+DF GRA+P +HLG DL
Sbjct: 664 ATLSERKKAEKYALWCDTLHKLSIAHHFKNDV-FFFPHNMDFCGRAHPCPAQFHHLGDDL 722
Query: 629 CRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
RG+L FAEG+ LG+ GL WLK+HL L G ++ S E R+A+ + +DDI DSA PL
Sbjct: 723 IRGLLLFAEGKPLGERGLWWLKLHLMKL-TGFSNERSAEERVAYADGIMDDILDSARNPL 781
Query: 689 EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
GR+WW +EDP+Q LA C + AL S PE +I H+P+H DG G QHYAA G D+
Sbjct: 782 NGRKWWQTSEDPWQTLAACKEIANALASPKPEEYICHLPIHHDGHYGGPQHYAAFGNDSE 841
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808
GA + + E P DVYS +A V ++ R+ + A +L + K VK++
Sbjct: 842 GALPADTIPMETPRDVYSKVADAV------ESLREAESAAGSDIASVLKGFIKGKTVKES 895
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
V T+VYG GA QI R+L+ G P A A+ Y A T ++ + +GI S
Sbjct: 896 VKTAVYGENRFGAYIQILRKLQVEGFPSSRAN--SAAHYLAIKTFESVEKTLTKTKGIQS 953
Query: 869 WLGECAK-IIASENQPVRWTTPLGLPVVQPYRKLGRHT--VKTSLQILTLQRETEKVMVK 925
W +CAK I+A+ +PV+WTTPLGLPVVQPY + H V++ ++ T +
Sbjct: 954 WFTQCAKAILAATEKPVQWTTPLGLPVVQPYFRTSMHKCLVESDNSAHSILIPTSEPQAT 1013
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
RQ+ FPPNF+HSLD +HMM+TA+ C AG+ F VHD +WTH V+E+++I +++FV
Sbjct: 1014 RQKNGFPPNFLHSLDSTHMMLTALYCEAAGIRFVPVHDCFWTHVSSVEELSKICQQQFVA 1073
Query: 986 LYEMPIFENLLDSFQKSF 1003
L+ P+ E + F + +
Sbjct: 1074 LHSEPLLEKIAAEFGRRY 1091
>gi|149034662|gb|EDL89399.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 1076
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 227/555 (40%), Positives = 318/555 (57%), Gaps = 33/555 (5%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A + P H S +
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSFRS------YR 585
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRN 546
Q + ++R P QL +AL LGN WRVN R+L ++ +I+ G RL R+
Sbjct: 646 TTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRLGVPPPRS 705
Query: 547 DVPLPEKPETE------DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P P K + +++LRK ++ K RE HS R + +LS+A+ ++D
Sbjct: 706 EAPRPAKHQLPPGSTPVHKSELRK---ELARCLKAAREMHSLRSEALYRLSLAQHLRDRV 762
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 763 -FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 820
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
+ S RLAF + + +I DSAD PL G++WW+KA++P+Q LA C+ + +A+RS P
Sbjct: 821 RKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDPT 880
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V + Q+DA
Sbjct: 881 AYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELRQQDA 940
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
+ V A+ L V RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 941 KEGLQV------AQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF- 993
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY +
Sbjct: 994 VWEASHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPIIQPYHR 1053
Query: 901 LGRHTVKTSLQILTL 915
+ VK LQ +T
Sbjct: 1054 ESKIQVKGGLQSITF 1068
>gi|156098707|ref|XP_001615369.1| DNA-dependent RNA polymerase [Plasmodium vivax Sal-1]
gi|148804243|gb|EDL45642.1| DNA-dependent RNA polymerase, putative [Plasmodium vivax]
Length = 1306
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/647 (34%), Positives = 346/647 (53%), Gaps = 43/647 (6%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTG 470
P F H S + GS YGVI L A H+ + ++PM+ P KWT
Sbjct: 674 LPVFVH-----SYVWRNGSW-YGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKWT- 726
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
+ +G L + +R + V LE + + +GN +W VN +L +++
Sbjct: 727 HSEGGMLLLKNNFIRCNVKPLFNIDVC-----NLERIKSVVSQMGNVRWEVNEEILHLIE 781
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPE---TEDEAQLRKWQWKVRNVKKENRERHSQRCDIE 587
++ G + ++ + + LP P ++ ++K+ + + N+ S+R
Sbjct: 782 YAYNKGITIGNIPRKQNYSLPSGPSHTAKQNVEDIKKYYLLREEISRLNKCLISERPTFL 841
Query: 588 LKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH 647
K+++A+ +K+ + Y+PHN+DFRGR YP+ P+L+H+ D+CR ++ F + +G GL
Sbjct: 842 QKIAIAKTLKNCKVIYFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFHDREEIGPRGLF 901
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC 707
WLKIHLAN + G DKL+ E R+ + +++L +I ++ P + +W AE P+Q L+V
Sbjct: 902 WLKIHLANNF--GKDKLTFEQRINWVDSNLGNIKRLSENPFQHVDFWSTAEKPWQALSVS 959
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
++LT AL P + S+IPV QDG+CNGLQHYAALGRD G AVN++ ++P D+Y+
Sbjct: 960 MDLTRALECPDPSKYRSNIPVQQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTV 1019
Query: 768 IAARVLVIIQRD--------------AQRDPAVFPDALRAKLL-----LSQVDRKLVKQT 808
+ V ++ D + P P R L + RK+VKQT
Sbjct: 1020 VLEIVRSKVKADLDGAASPPKGDRGKSSGTPNCAPPRCREHLAKCCFQFDLLKRKVVKQT 1079
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAP-MEEAELFGASCYAAKVTLTALGEMFQAARGIM 867
+MT YGVT +GA+DQ+K +++ +E+ + S Y A ++ E+F+ A I
Sbjct: 1080 IMTICYGVTSVGAKDQVKGKIQSMTTKVLEKKTINQLSQYIANYIFESISEIFKRAMIIK 1139
Query: 868 SWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK-R 926
W +K+ N PV W +P+GLP QPYR R V T LQ +++ ++ K +
Sbjct: 1140 KWFNNLSKVTNELNIPVTWLSPIGLPCEQPYRLGHRILVNTPLQSVSVISYQNSLLHKNK 1199
Query: 927 QRTAFPPNFVHSLDGSHMMMTA-VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
QR FPPNFVHSLD SH+MMTA + +FA VHDSYWTHAC+VD+MN +R+ FV
Sbjct: 1200 QRLGFPPNFVHSLDASHLMMTAEKMVLENNFSFAAVHDSYWTHACNVDQMNVFIRDSFVT 1259
Query: 986 LYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
LYE PI +NL +Q K P P++G D+ V S YFF+
Sbjct: 1260 LYEEPILQNLYRGYQMRLGKHASRIPAPPDQGHLDVSLVRRSRYFFS 1306
>gi|426230933|ref|XP_004009513.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Ovis aries]
Length = 981
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/475 (44%), Positives = 288/475 (60%), Gaps = 33/475 (6%)
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
RE S R D +LS+A+ +++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEFA
Sbjct: 519 REMQSLRADALYRLSLAQHLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFA 577
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+GR LG GL WLKIHL NL G + S + R + + ++DI DSA++P+ GR+WW++
Sbjct: 578 QGRPLGPHGLDWLKIHLVNL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWME 636
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
A++P+Q LA C+ + + + S P T+ISH PVHQ GLQHYAALGRD+ GA +VNL
Sbjct: 637 ADEPWQTLACCMEIAQVVHSPDPTTYISHFPVHQ-APGMGLQHYAALGRDSTGATSVNLS 695
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
+ P DVYS +AA+V V ++DA++ V A++L + RK+VKQTVMT VYGV
Sbjct: 696 PSDLPQDVYSEVAAQVEVFRKQDAKQGVRV------AQVLEGFISRKVVKQTVMTVVYGV 749
Query: 817 TYIGARDQIKRRLKE-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK 875
T GAR QI+RRL+E P E ++ AS Y + +L EMF R I WL E A+
Sbjct: 750 TR-GARLQIERRLRELEDFPQEF--VWEASHYLVRQVFNSLQEMFSGTRSIQRWLTESAR 806
Query: 876 IIASENQPVRWTTPLGLPVVQPYR---KLGRHTVKTSLQILTLQRET---EKVMVKRQRT 929
+I+ V W TPLG+P++QPY K+ +K LQ LT +K +Q+
Sbjct: 807 LISLTGSAVEWITPLGVPIIQPYHRDSKVMVRAIKGGLQSLTFSSSVDTNQKPNTLKQKN 866
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
FPPNF+HSLD +HMM+TA+ C + GLTF VHD +WTHA DV MN++ RE+FV L+
Sbjct: 867 GFPPNFIHSLDSTHMMLTALHCYRKGLTFVSVHDCFWTHAADVGVMNQVCREQFVRLHSQ 926
Query: 990 PIFENLLDSFQKSFP--------------KLVFPPLPERGDFDLREVLGSPYFFN 1030
PI +L K F K +P G FDL +V S +FF+
Sbjct: 927 PILHDLSRFLLKRFCPDSRTSKSMWVSRLKDTLLSVPPTGTFDLEQVKHSTFFFS 981
>gi|84998152|ref|XP_953797.1| DNA-directed RNA polymerase (mitochondrial precursor) [Theileria
annulata]
gi|65304794|emb|CAI73119.1| DNA-directed RNA polymerase (mitochondrial precursor), putative
[Theileria annulata]
Length = 1222
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/640 (34%), Positives = 338/640 (52%), Gaps = 49/640 (7%)
Query: 415 AFTHALRTVSKETKGGSKKYGVIEC-NPLVLKGLERTARHMV-IPYMPMLVPPVKWTGYD 472
AF H L + G K +GV+E +LK + A+ +V + +PM+ P +W
Sbjct: 606 AFRHVL------LRQGVKTFGVLEMRESCMLKLRDFVAKSLVSLAALPMVCKPKRWINAT 659
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
G L +R G+K V L VF+ ++ W +N ++L+++ I
Sbjct: 660 TGGSILLKHNFIR--GSKLNEVKVY-----DLGNVFDIVNKFSQVPWIINRQMLNLIKHI 712
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
C + D+ + +P+ + + N+ + S+ ++ +
Sbjct: 713 --CSSQ-TDMQIKQHLPVNTTTNI-----MENINTSISNITSLSSNELSELSLFLRRIKI 764
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
A +E+ Y P N+DFRGR YP+ PYLNH+ DLCR +L F+E R LG GL WLK+H
Sbjct: 765 ADAFANEKRLYMPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSEKRKLGNRGLFWLKVH 824
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE--GRRWWLKAEDPFQCLAVCINL 710
+N+Y G DK+S E R+ + + H+ I + P + + +W+KA+ PFQ A C+ L
Sbjct: 825 CSNMY--GNDKISFEDRVKWVDEHIAIITELVKSPFKDFNQNFWVKADKPFQFFASCVEL 882
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
A+ S++P+ +++H+P+ QDG+CNGLQHYAALG D GA VNLV E+P D+Y+ I
Sbjct: 883 VRAIESNNPDEYMTHLPIQQDGTCNGLQHYAALGLDERGAKYVNLVNSEQPQDLYTHILQ 942
Query: 771 RVLVIIQRDAQRDPAVFPD---ALRAKLLLSQVD----------------RKLVKQTVMT 811
++ + D + + LS V+ RK++KQTVMT
Sbjct: 943 LIIQKVYNDLNYTNSTVSNNTLVTSGNGKLSNVESNKKYSEICVNNNILCRKVIKQTVMT 1002
Query: 812 SVYGVTYIGARDQIKRRLKE--RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
YGVT IGA DQ++ +LK+ + + + +EL G + Y A L+++ +F A I +W
Sbjct: 1003 ICYGVTRIGAIDQVESKLKDIKKISYLSPSELRGLAAYLANKILSSISTIFSEAMSIKNW 1062
Query: 870 LGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRT 929
L E + + N PV W +P+GLP QPY K V+T LQ + + + V +RQ+
Sbjct: 1063 LDEISCVHNKFNIPVTWISPIGLPCEQPYCKSVTKVVRTPLQAINVSKYVSSVDKRRQKL 1122
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEM 989
AFPPNF+HSLD SH+MMTA K +FA VHDSYW H VD M+ +R +F ++
Sbjct: 1123 AFPPNFIHSLDASHLMMTATEVFKHTQSFATVHDSYWIHPDKVDMMHTHIRNEFFNMHTK 1182
Query: 990 PIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
PI ++L S ++ F P P++G+F+L VL S YFF
Sbjct: 1183 PILDDLHKSVLNKL-QIDFRPPPKKGNFNLEHVLDSKYFF 1221
>gi|308470906|ref|XP_003097685.1| hypothetical protein CRE_14239 [Caenorhabditis remanei]
gi|308239803|gb|EFO83755.1| hypothetical protein CRE_14239 [Caenorhabditis remanei]
Length = 1135
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/613 (36%), Positives = 333/613 (54%), Gaps = 55/613 (8%)
Query: 459 MPMLVPPVKWTGYDKGAHFF-----LPSYVMRTHGAKQQRDTVKR-TPKKQLEPVFEALD 512
+PM VPP W G + + +M + + +R T Q PVF+AL+
Sbjct: 537 LPMTVPPRPWIDKGTGGPLYTVGQDIIRNMMEFKSVRLNDEMRQRITSPSQGRPVFDALN 596
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGR--LADLVDRNDVPLPE---------------KPE 555
LG+T W +N +L L +++ + +L+++ +P+ + K E
Sbjct: 597 QLGSTPWVINEPMLDTLKTVFNKSNQKDSEELLEKLGIPMRQDTFDVPDFVTEFGKVKKE 656
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
D + R + + K E +S C + ++ +A + + ++PHN+DFRGR Y
Sbjct: 657 DIDVEKFRGYAKRKAEAIKMRNESNSLWCWMLYRVVLADHFRGQ-TLFFPHNMDFRGRVY 715
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
P+ PYL+H+G D+ R IL+FA+ + LG G WLK+H NL G + + S R+ E
Sbjct: 716 PLSPYLSHMGDDVNRCILKFAKSQPLGSKGFDWLKLHCINL-TGTMKRSSVTDRMVEAER 774
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSC 734
L I DSA PL G +WW+ +++P+Q LA C+ + +A+R S +F S +PVHQDGSC
Sbjct: 775 LLPMILDSARDPLGGEKWWMSSDEPWQTLAACVEIEQAMRYGSDVSSFQSQLPVHQDGSC 834
Query: 735 NGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAK 794
NGLQHYAALGRD G VNL + P DVYS +A RV ++D + + AL+ +
Sbjct: 835 NGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRKQDEESNGEDRDVALKLR 894
Query: 795 LLLSQ-VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
L Q V RK++KQTVMT+VYGVT GA QIKR+LK P E+A +F Y A+ T
Sbjct: 895 DALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKALDIPGEDAAIFAR--YLARKTF 952
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
+L + F ++ + W AK + + V W TPLGLPVVQPY KL K L +
Sbjct: 953 ASLNDAFTSSMALKDWFRLIAKGSSDLMKTVEWITPLGLPVVQPYCKLTERKSKLVLVPI 1012
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
+ +Q AFPPNFVHSLD +HMM+T++ C G+TFA VHD +WTHA VD
Sbjct: 1013 PM----------KQVDAFPPNFVHSLDSTHMMLTSLNCAHRGITFAAVHDCFWTHANSVD 1062
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSF--PKL--------------VFPPLPERGDF 1017
EMN I R++FV L+ PI + + F+ ++ P++ +F ++G+
Sbjct: 1063 EMNAICRQQFVSLHSQPIVQQCSEWFKTTYLTPRMQKILPSSEFEKYTDIFTAKVKQGEL 1122
Query: 1018 DLREVLGSPYFFN 1030
D+ +V S YFF+
Sbjct: 1123 DIEKVKDSVYFFS 1135
>gi|449295533|gb|EMC91554.1| hypothetical protein BAUCODRAFT_38669 [Baudoinia compniacensis UAMH
10762]
Length = 1478
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 253/716 (35%), Positives = 371/716 (51%), Gaps = 60/716 (8%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
+ R+++ V I + W +A +E R++ + Q + +L W++ L A+ +
Sbjct: 385 RQRLMEETSVDIAIQRWREADDELRKIGISTQLQSRP-----LGALMWQWYQALLPALKE 439
Query: 248 EQERCR--MAKHKVA-------YAPYFDQLPADMMAVITMHKLMGLLMTGGE-HGRARVV 297
E CR MA+ A YAPY + LP D +A T+ ++ G + H + V
Sbjct: 440 ELAECRKVMAQPDGAKEEDRSFYAPYLELLPMDKVAANTILFVVSRFAGGKDRHTKKYEV 499
Query: 298 QA-----ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVT 352
+ +G +E E + +E+ K E +G + Q K +
Sbjct: 500 EMKLSHLTTSLGKQLEAEADASRSVEQMK--------ERRQGGKIKASKRRQGMFAKGL- 550
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPP 410
K K A +V+ D W DA+ K+ + +I+ L ++A + + +
Sbjct: 551 ----KHKKGANSTLVESDDK---WPLDAKVKLCAMLIQKLKESAQLPVTREHPRTKQKIT 603
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP-YMPMLVPPVKWT 469
+ PAF H ++ V KK G++ NP ++ LE VI MPM+V P WT
Sbjct: 604 QLQPAFLHRIKYVL------GKKVGIVAPNPALIDKLESEPMGSVIAKRMPMIVEPKPWT 657
Query: 470 GYDKGAHFFLPSYVMRTH-GAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLS 527
G+ G + + V+R G K RD K + ++ L LG W+V+ V
Sbjct: 658 GWSVGGYIHYANDVLRLGPGDKSGRDYFHAAHNKGDMTQLYAGLTALGKVPWKVHPDVFR 717
Query: 528 VLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
V W+ G +A+ + + +P +P D A+ R W V +V+ + HS+RC
Sbjct: 718 VQIEAWNSGEEIANFAPLHPQIDVPPEPPAGDMAERRNWLKAVDDVENKRSGAHSKRCFQ 777
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
++ VAR M +E Y+PHN+DFRGRAYP+ PYLNH+G+D RG+L FAEG+ LG GL
Sbjct: 778 NFQMEVARAMLNET-IYFPHNMDFRGRAYPIPPYLNHMGADNVRGVLVFAEGKPLGDKGL 836
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
WLKIHLA + G DK S RL +TE+HLDDI+DS PL GRRWWLKAED +Q LA
Sbjct: 837 RWLKIHLATV--AGYDKASMSERLQYTEDHLDDIYDSVRNPLNGRRWWLKAEDSWQTLAA 894
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C LT+AL S P F+S +P+ QDG+CNGLQHYAALG D +GA VNL ++PADVY+
Sbjct: 895 CFELTKALDSPDPTKFLSTLPIQQDGTCNGLQHYAALGGDEIGARQVNLEPGDRPADVYT 954
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A V + RDA + A+ L ++ RK VKQ VMT+VYGVT+ GA+ Q++
Sbjct: 955 AVAEEVKKAVARDAAAGNKI------AQKLDGRLTRKCVKQPVMTNVYGVTFYGAKAQVQ 1008
Query: 827 RRLK---ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS 879
R+L+ + ++ L S Y A ALG MF A+ I +WLG+CA IA+
Sbjct: 1009 RQLEVLFPEVSRFDDISLQKMSLYVATEIFKALGSMFTGAQAIQNWLGQCADRIAT 1064
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDG 941
V WTTPL LPVVQPYR V T++Q L L + V ++Q AFPPNF+HSLD
Sbjct: 1154 VVWTTPLRLPVVQPYRTSASKGVGTAMQTLYLTNPHVWDPVSKRKQLQAFPPNFIHSLDA 1213
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
+HM+++A+ C + G+TFA +HDS+WTHACDVD +N +LR+ FVE++ I L + FQ
Sbjct: 1214 THMLLSALKCTEMGMTFASIHDSFWTHACDVDRLNILLRDAFVEMHSENIIGRLREEFQT 1273
Query: 1002 SFPKLVF 1008
+ ++
Sbjct: 1274 RYKGCMY 1280
>gi|402076916|gb|EJT72265.1| hypothetical protein GGTG_09131 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1501
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 243/707 (34%), Positives = 368/707 (52%), Gaps = 86/707 (12%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W + +VG+ +++ + QTA I + + + PAF H +++ K G KK
Sbjct: 605 WPVGIKYQVGAALLQAIIQTATITVVKEHPETGSLVSESQPAFVH-----NQQYKRG-KK 658
Query: 434 YGVIECNPLVLKGLERTAR-HMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTH-GAKQ 491
GV+ N +++ L+R R + ++PM+ P WT +D+G P+ ++R G +
Sbjct: 659 VGVLVVNKTLVEMLKREPRADFLARHLPMVCEPEPWTRFDRGGFIESPAQMVRVKPGERD 718
Query: 492 QRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVP 549
Q+ + + +E + + LD+LG T W++N V V+ +W+ G LA++ + +P
Sbjct: 719 QKIYAEAAIENGHMEQIMKGLDSLGKTAWKINKNVFGVMLDVWNSGEALANIPPLDPKIP 778
Query: 550 LPEKP-ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
+PE+P TED RKW V+ + H RC + +L +AR ++D+ Y+PHNV
Sbjct: 779 VPEEPVATEDPVARRKWLNAVKMAENLKSSLHGVRCFMNFQLEIARAVRDQT-IYFPHNV 837
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGRAYP+ Y NH+G+D RG++ FA+G+ LG+ G WLK+HLAN++ G DK S
Sbjct: 838 DFRGRAYPLPTYFNHMGADHVRGLMLFAKGKELGEEGFRWLKVHLANVF--GFDKASLRE 895
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
R F +L++I DSA PL GRRWWLK EDP+QCLA C L A S FISH+PV
Sbjct: 896 REKFAMENLENIMDSATNPLTGRRWWLKGEDPWQCLATCYELKAAFESPDATKFISHLPV 955
Query: 729 HQDGSCNGLQHYAALGRDTLG----------------AAAVNLVAREKPADVYSG----- 767
HQDG+CNGLQHYAALG D G +A +LV+ + D +G
Sbjct: 956 HQDGTCNGLQHYAALGGDEWGARQVNLEPGERPADVYSAVADLVSEDLARDAEAGNFMAK 1015
Query: 768 ----------IAARVLVII----------QRDAQRDPAVFPD-----ALRAKLLLSQVDR 802
+ V+ + Q Q D A++PD + +L S +
Sbjct: 1016 ALNGKIKRKVVKQTVMTNVYGVTFAGAKKQVQKQLD-ALYPDLAEQAGVEPVVLSSYIAM 1074
Query: 803 KLVK--QTVMTSVYGV-TYIG------ARDQIKRRLKERGAPMEEAELFG----ASCYAA 849
K+ + + + + T++G R +LK+ A E +L + AA
Sbjct: 1075 KIFSALSQMFSGAHEIQTWLGEIGGRVCRAITPEQLKQLAAQFPEEQLMTGDGRSKTKAA 1134
Query: 850 KVTLTALGEMFQAARG------IMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR 903
K TA G+ +AA+G +++ + WTTPL +PVVQPYR G
Sbjct: 1135 KGVKTAKGD--KAAKGDATAKGKKKKAPTTDDLLSHFRSTIVWTTPLRMPVVQPYRHTGV 1192
Query: 904 HTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGV 961
+ T LQ L L+ ++ V ++Q AFPPNF+HSLD SHMM++A+ C + GLTFA V
Sbjct: 1193 RLISTCLQTLALKTPEASDPVNRRKQLQAFPPNFIHSLDASHMMLSALECGEMGLTFAAV 1252
Query: 962 HDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
HDS+WTHA DV M+R+LR+ FV ++ + L F+ + V+
Sbjct: 1253 HDSFWTHATDVGRMSRVLRDAFVRIHTEDVIARLAAEFETRYAGSVY 1299
>gi|124804211|ref|XP_001347935.1| DNA-dependent RNA polymerase [Plasmodium falciparum 3D7]
gi|23496188|gb|AAN35848.1|AE014839_57 DNA-dependent RNA polymerase [Plasmodium falciparum 3D7]
Length = 1531
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/657 (32%), Positives = 334/657 (50%), Gaps = 76/657 (11%)
Query: 434 YGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
YGVI L A H+ + Y+PM+ P +W ++ G S++
Sbjct: 889 YGVIHMRECCANYLLNNAINSHIPLNYLPMICKPKRWENFEGGMLLLKNSFI-------- 940
Query: 492 QRDTVK---RTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV 548
R +K L + + +GN W++N +L ++ + G + + +
Sbjct: 941 -RCNIKPLFNLNVCNLNRIKNIVSEIGNVGWKINKEILHYIEYAYIHGITIGKIPLYKNY 999
Query: 549 PLPE--KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
LP+ + ++ +++K+ + + N+ S+R KL+VA+ KD + Y+PH
Sbjct: 1000 TLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDIIYFPH 1059
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
N+DFRGR YP+ P+L+H+ D+CR ++ FAE + +G GL WLKIHLAN + G DKLS
Sbjct: 1060 NIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKDKLSF 1117
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
+ R+ + + ++++I +P + +W AE P+Q LAV I+L AL S + + S I
Sbjct: 1118 QKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKYKSSI 1177
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
P+ QDG+CNGLQHYAALG+D G AVN++ ++P D+Y + VL I+ + D
Sbjct: 1178 PIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIY----SVVLDIVISKIKNDLMN 1233
Query: 787 FPDALRAKLLLSQVD--------------------------------------------- 801
+ ++ ++
Sbjct: 1234 ISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKF 1293
Query: 802 ----RKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAKVTLTAL 856
RK+VKQT+MT YGVT IGA++Q+K +++ G +++ + S Y A ++
Sbjct: 1294 DLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESI 1353
Query: 857 GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-ILTL 915
E+F+ A I W +K+ N P+ W +P+GLP QPYR R V T LQ I +
Sbjct: 1354 SEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVI 1413
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA-VACRKAGLTFAGVHDSYWTHACDVDE 974
+ ++ +QR FPPNFVHSLD SH+MMTA + +FA VHDSYW HAC+VD
Sbjct: 1414 SYKNSQLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQNNFSFAAVHDSYWAHACNVDI 1473
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFF 1029
MN+ +RE F+ LY PI EN+ ++F+ K P PE+G+ D+ V S YFF
Sbjct: 1474 MNQFIRESFITLYNEPILENIYNNFRIRLGKFATKIPSSPEQGELDISMVKDSLYFF 1530
>gi|9857985|gb|AAG00950.1|AF273674_1 DNA-dependent RNA polymerase [Plasmodium falciparum]
Length = 1503
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 214/657 (32%), Positives = 334/657 (50%), Gaps = 76/657 (11%)
Query: 434 YGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
YGVI L A H+ + Y+PM+ P +W ++ G S++
Sbjct: 861 YGVIHMRECCANYLLNNAINSHIPLNYLPMICKPKRWENFEGGMLLLKNSFI-------- 912
Query: 492 QRDTVK---RTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV 548
R +K L + + +GN W++N +L ++ + G + + +
Sbjct: 913 -RCNIKPLFNLNVCNLNRIKNIVSEIGNVGWKINKEILHYIEYAYIHGITIGKIPLYKNY 971
Query: 549 PLPE--KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
LP+ + ++ +++K+ + + N+ S+R KL+VA+ KD + Y+PH
Sbjct: 972 TLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDIIYFPH 1031
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
N+DFRGR YP+ P+L+H+ D+CR ++ FAE + +G GL WLKIHLAN + G DKLS
Sbjct: 1032 NIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKDKLSF 1089
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
+ R+ + + ++++I +P + +W AE P+Q LAV I+L AL S + + S I
Sbjct: 1090 QKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKYKSSI 1149
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
P+ QDG+CNGLQHYAALG+D G AVN++ ++P D+Y + VL I+ + D
Sbjct: 1150 PIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIY----SVVLDIVISKIKNDLMN 1205
Query: 787 FPDALRAKLLLSQVD--------------------------------------------- 801
+ ++ ++
Sbjct: 1206 ISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKF 1265
Query: 802 ----RKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAKVTLTAL 856
RK+VKQT+MT YGVT IGA++Q+K +++ G +++ + S Y A ++
Sbjct: 1266 DLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESI 1325
Query: 857 GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-ILTL 915
E+F+ A I W +K+ N P+ W +P+GLP QPYR R V T LQ I +
Sbjct: 1326 SEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVI 1385
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA-VACRKAGLTFAGVHDSYWTHACDVDE 974
+ ++ +QR FPPNFVHSLD SH+MMTA + +FA VHDSYW HAC+VD
Sbjct: 1386 SYKNSQLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQNNFSFAAVHDSYWAHACNVDI 1445
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFF 1029
MN+ +RE F+ LY PI EN+ ++F+ K P PE+G+ D+ V S YFF
Sbjct: 1446 MNQFIRESFITLYNEPILENIYNNFRIRLGKFATKIPSSPEQGELDISMVKDSLYFF 1502
>gi|426347255|ref|XP_004041272.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Gorilla gorilla gorilla]
Length = 943
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/436 (47%), Positives = 270/436 (61%), Gaps = 24/436 (5%)
Query: 611 RGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRL 670
R R + NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G + L
Sbjct: 516 RQRXXXXXXHFNHLGSDVARALLEFAQGRPLGPRGLDWLKIHLVNL-TGLKKREPLRKCL 574
Query: 671 AFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQ 730
AF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P ++SH+PVHQ
Sbjct: 575 AFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQ 634
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
DGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++DAQR V
Sbjct: 635 DGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGTRV---- 690
Query: 791 LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAK 850
A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E ++ AS Y A+
Sbjct: 691 --AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELNDFPQEF-VWEASHYLAR 747
Query: 851 VTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR-HTVKTS 909
+L EMF R I WL E A++I+ V W TPLG+PV+QPYR + +
Sbjct: 748 QVFKSLQEMFSGTRAIQHWLTESARLISHTGSVVEWVTPLGVPVIQPYRLDSKGKQIGGG 807
Query: 910 LQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
+Q + + K ++Q+ FPPNF+HSLD SHMM+TA+ + GLTF VHD YW
Sbjct: 808 IQSIAYTHNGDISRKPNPRKQKNGFPPNFIHSLDSSHMMLTALHYYRKGLTFVSVHDCYW 867
Query: 967 THACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP------------KLVFPPLPER 1014
THA DV MN++ RE+FV L+ PI ++L K F K +P+
Sbjct: 868 THAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKP 927
Query: 1015 GDFDLREVLGSPYFFN 1030
G FDL +V S YFF+
Sbjct: 928 GAFDLEQVKRSTYFFS 943
>gi|339245165|ref|XP_003378508.1| DNA-directed RNA polymerase domain protein [Trichinella spiralis]
gi|316972574|gb|EFV56247.1| DNA-directed RNA polymerase domain protein [Trichinella spiralis]
Length = 1230
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 220/514 (42%), Positives = 293/514 (57%), Gaps = 64/514 (12%)
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+KK E +S C + KL++A +D+ ++PHN+DFRGR YP P+ NH+G D+CRG
Sbjct: 726 LKKLKNENYSLWCSLLYKLTIANHFRDD-IIWFPHNLDFRGRVYPCPPHFNHMGDDVCRG 784
Query: 632 I------------------------LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
I L FA+G+ LG+ GL WLK+HL NL G + +
Sbjct: 785 IWLIFYLLILLQFSHYSRLFKIEGLLLFAKGQPLGEKGLDWLKVHLINL-TGIMKHETFT 843
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS-SSPETFISHI 726
RLAF + ++DI DSA KPL GRRWW +E+P+Q LA C+ + A+ E F SH
Sbjct: 844 ARLAFANSIIEDILDSAAKPLTGRRWWTLSEEPWQTLACCMEIAAAINCPDGCENFQSHF 903
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
PVHQDGSCNGLQHYAALGRD GA VNL ++P DVYSG+A V DA+ +
Sbjct: 904 PVHQDGSCNGLQHYAALGRDREGAFQVNLCPDDRPQDVYSGVAQLVEKKRVEDAKNGNEI 963
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
A L V RK+VKQTVMT+VYGVT GAR QI ++LK + ++ + F AS
Sbjct: 964 ------AIQLDGIVKRKVVKQTVMTTVYGVTQFGARQQISKQLKALDSLPDDVQ-FQASK 1016
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP-VRWTTPLGLPVVQPYRK----- 900
Y + T +LG+MF A+ I WL E + ++A + Q + W TPL PVVQPY K
Sbjct: 1017 YLMRKTFDSLGQMFAKAKLIQDWLAELSSLVAKDCQSAMSWRTPLQFPVVQPYYKPARVA 1076
Query: 901 ---LGRHTVKTSLQ-ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
LG ++ + + T + ++QR FPPNF+HSLD SHMM+T++ C++ GL
Sbjct: 1077 ASVLGDYSDDVCRRAVYNRCCSTGRPDSRKQRNGFPPNFIHSLDSSHMMLTSLYCQRDGL 1136
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN---------LLDSFQKSFP--- 1004
TFA VHD YWTHA VD M ILR++FV L+ P+ + LLD + S P
Sbjct: 1137 TFASVHDCYWTHASTVDAMAHILRQQFVRLHSEPVLKQLSEYLISSFLLDRYNNSCPDDK 1196
Query: 1005 -----KLV---FPPLPERGDFDLREVLGSPYFFN 1030
K + F +P GDFD+ EVL S YFF+
Sbjct: 1197 ANEKRKYLLERFQDVPAAGDFDIVEVLKSKYFFS 1230
>gi|399219089|emb|CCF75976.1| unnamed protein product [Babesia microti strain RI]
Length = 1095
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 231/644 (35%), Positives = 344/644 (53%), Gaps = 46/644 (7%)
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
+FTH+L +T G G+ +C +K + H Y+PM++ P WT Y+KG
Sbjct: 468 SFTHSLERFYGKTFG---VIGIRDCCWSYIKDTIAKSLHTQ-SYLPMVIEPRPWTKYNKG 523
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+ + +RT +V + VF ++ + W++N R+L ++ W
Sbjct: 524 GCYSSKAIFIRTPTGSYCDYSVYDFTR-----VFNIVNAISRVPWKINTRMLKLISLAWD 578
Query: 535 CGGRLADLVDRNDVPLPEK----PETEDEAQ-LRKWQWKVRNVKKENRERHSQRCDIELK 589
+L +P+ K P+ +E + ++ + + V+ +N ++ ++ +
Sbjct: 579 SSSARLNLWPH--LPIKSKISLLPDDLNEIENIKMYAKDPKVVEFQNARLSTETPLLQRR 636
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
LS+A++ + Y+PHN+DFRGR YPM +LNH+G DLCR +L FA G+ LG GL WL
Sbjct: 637 LSIAKEFSNAAEIYFPHNIDFRGRLYPMSSHLNHMGDDLCRSLLLFARGKPLGDRGLFWL 696
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDD-----------IFDSADKPLEGRRW--WLK 696
KIH+ANL+ G DK+ + RL + E+++ + + D K LE W W+
Sbjct: 697 KIHIANLF--GQDKIQFQHRLDWVEDNIKNFERLVKIFNPSLIDIPTKLLEDDVWNFWIS 754
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
A+DP+Q + L AL+ PE +IS IP+ QDGSCNGLQHYAALGRD G +AVNL
Sbjct: 755 ADDPWQAYSAITELLNALKLDDPEEYISCIPIQQDGSCNGLQHYAALGRDYNGGSAVNLT 814
Query: 757 AREKPADVYSGIAARVLVIIQRD---AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSV 813
+ P DVYS + V+ +Q D ++D + ++ LL RK+VKQTVMT
Sbjct: 815 PSDSPQDVYSTVLQAVIEKVQNDNVIGEKDYEISAKCVQLGLL----KRKVVKQTVMTIC 870
Query: 814 YGVTYIGARDQIKRRLKE-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE 872
YGVT GA +QIKR++ E + M+ E+ S Y A L+++ ++F+ A I WL +
Sbjct: 871 YGVTRSGAVEQIKRQIIELYPSQMQIEEVHSLSQYIADKILSSINKVFKEAMKIKRWLDK 930
Query: 873 CAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR-ETEKVMVKRQRTAF 931
+ S P+ W +P+GLP QPY K + V + LQ L + + + ++Q+ AF
Sbjct: 931 ISLAHNSLGIPINWLSPIGLPCHQPYSKYTKMHVVSPLQCLNISDPDPDNPDKQKQKLAF 990
Query: 932 PPNFVHSLDGSHMMMTAVAC---RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
PPNF+HSLD +H+MMTA A K FA VHDSYW DVD MN +RE+FV+LY
Sbjct: 991 PPNFIHSLDATHLMMTAEALLINDKRLCNFAAVHDSYWALPSDVDTMNVAIREEFVKLYR 1050
Query: 989 MPIFENLLDSFQKSFPKL---VFPPLPERGDFDLREVLGSPYFF 1029
PI +NL L + P PE G D+ V S YFF
Sbjct: 1051 QPILKNLYQFCSDRLGYLGNELIPEPPEIGSLDIDAVTKSKYFF 1094
>gi|428673226|gb|EKX74139.1| DNA-dependent RNA polymerase domain containing protein [Babesia equi]
Length = 1194
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 234/644 (36%), Positives = 336/644 (52%), Gaps = 43/644 (6%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPL-VLKGLERTARHMV-IPYMPMLVPPVKWTG 470
PAF H K + G + YG +E +LK + AR ++ + +PM+ P W
Sbjct: 568 IPAFVH------KILRNGVRTYGTLEMKECCMLKLRDVVARGLINLSALPMICEPKPWVT 621
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
+G L Y +RT V L VF ++ G W++N VL VL
Sbjct: 622 VSQGGSLILKHYFIRTTNRASFDIRVF-----DLSNVFSITNSFGKVPWKINAGVLDVLK 676
Query: 531 RIWSCGGRL---ADLVDRNDVPLPEKPETEDEAQLRK-WQWKVRNVKKENRERHSQ---R 583
++W + A L D++ L EK ET++ + ++ + K R +E++ R +
Sbjct: 677 KLWDADSSVPMRAYLPDKS--CLKEKGETKNTSDSKEIYNPKNRWANEEDKVRIANAISE 734
Query: 584 CDI-ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLG 642
C + E ++ +A E+ Y P ++DFRGR YP+ PYLNH D CR +L F+E R LG
Sbjct: 735 CSLFERRIYIAENFIHEQKLYLPASIDFRGRLYPLSPYLNHACDDACRSLLTFSEVRPLG 794
Query: 643 KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE--GRRWWLKAEDP 700
+ GL WLK+H++NLY G+DKL + R+ + +N + I P + +W KAE P
Sbjct: 795 ERGLFWLKVHVSNLY--GIDKLPFDDRIVWVDNQMSSIEKLVKNPFSDSSQDFWSKAEKP 852
Query: 701 FQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK 760
FQ A L A+ S P ++S IPV QDGSCNGLQHY+ALGRD G +VNL+ +K
Sbjct: 853 FQFFASACELVSAIHSKDPHKYLSSIPVQQDGSCNGLQHYSALGRDYNGGLSVNLIDTDK 912
Query: 761 PADVYSGIAARVLVIIQRDAQRDP--------AVFPDALRAKLLLSQ--VDRKLVKQTVM 810
P DVY + V+ + R+ QR P A P AKL + + RK VKQTVM
Sbjct: 913 PQDVYKKVLLEVISKVTREFQRAPPTSGAVGIANTPYDC-AKLCIDHGLLKRKTVKQTVM 971
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFG---ASCYAAKVTLTALGEMFQAARGIM 867
T YGVT +GA DQI +LK+ A ++ + + Y A ++ +F A I
Sbjct: 972 TICYGVTRMGAIDQIDNKLKDE-ASLDHLHPYARRRLATYIAGKVFGSIKTIFNEAMNIK 1030
Query: 868 SWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL-TLQRETEKVMVKR 926
WL + N PV W +P+GLP QPY K+ + T +Q + + ++ + +R
Sbjct: 1031 KWLDGISSAHTKFNIPVTWISPIGLPCEQPYCKVDSSVLHTEMQAMRIVDLKSAHLDKRR 1090
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
QR AFPPNF+HSLD SH+M TA K+ +FA VHDSYW HA VD M LR+ FV +
Sbjct: 1091 QRMAFPPNFIHSLDASHLMFTAREIFKSCTSFASVHDSYWIHADRVDFMRSELRKGFVNM 1150
Query: 987 YEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
Y+ PI E+L + + + V P+ G D+ VL S YFF+
Sbjct: 1151 YKRPILEDLYSTCVRRLGEGVVSEPPDTGKLDIESVLDSQYFFH 1194
>gi|156386128|ref|XP_001633765.1| predicted protein [Nematostella vectensis]
gi|156220840|gb|EDO41702.1| predicted protein [Nematostella vectensis]
Length = 496
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 216/501 (43%), Positives = 295/501 (58%), Gaps = 21/501 (4%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAKQQRDTVKR--TPKKQLEPVFEALDTLG 515
+PMLVPP W G G P +MR T D + R ++L V ++L+ LG
Sbjct: 6 LPMLVPPRPWRGIRDGGFLIQPVQLMRSTQEMDDNHDHMLRYKCDSRELSAVLDSLNYLG 65
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP----EKPETEDEAQLRKWQWKVRN 571
W+ NNR+L + ++++ G + VPL EK E EA++++ Q + R
Sbjct: 66 TCAWKTNNRILDLAIQVFNDQGDDTLAIPGPVVPLELEPLEKSVKEPEARMKQIQ-EHRR 124
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+K RE +S R KLSVA +D F+ P N+DFRGR YP+ P+ H+G DL RG
Sbjct: 125 ARKLAREHYSLRMTALYKLSVANHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVGDDLSRG 183
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
+L+FAEG LG GL WLKIHLANLY G K S + R+ +T+ + ++ DSAD PL G
Sbjct: 184 MLQFAEGVPLGPDGLRWLKIHLANLY-GAKKKSSLDERVEYTDQMMSEVLDSADNPLTGA 242
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
RWW+ ++P+Q LA C+ + +A+RS P ++SH PVHQDGSCNGLQHYAALG D GA
Sbjct: 243 RWWMHGDEPWQVLATCMEIAKAVRSPDPAQYVSHQPVHQDGSCNGLQHYAALGHDRYGAR 302
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ ++P DVY+ +A V DA++ + A LL +V R++VKQTVMT
Sbjct: 303 QVNLIPADRPQDVYAEVAKLVEEARLHDAEQGHRI------ATLLEDKVTRRVVKQTVMT 356
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
VYGVT++G R QI+R+LK+ ++E LF AS Y ++G+MF A+ I W
Sbjct: 357 IVYGVTFVGGRLQIERQLKDLD--LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWFA 414
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV---KRQR 928
A IA V W TPL L V QPY K T+KT LQ + + + + V ++QR
Sbjct: 415 LSATHIAYTGHCVDWYTPLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQR 474
Query: 929 TAFPPNFVHSLDGSHMMMTAV 949
AFPPNFVHSLD +HMM+TAV
Sbjct: 475 AAFPPNFVHSLDSTHMMLTAV 495
>gi|237835433|ref|XP_002367014.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211964678|gb|EEA99873.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221506312|gb|EEE31947.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 2084
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/580 (38%), Positives = 314/580 (54%), Gaps = 67/580 (11%)
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK------ 564
+ LG+ WR+N VL V++ +W G + L R+ L E+ QLR+
Sbjct: 1512 VSALGSQAWRINKAVLGVMEAVWERGLEVGRLPPRDSAGL-----EEEIFQLRRVVSNPR 1566
Query: 565 ------WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMH 618
++R++ ++ + S+R LKL VAR + + Y+PHN+DFRGR YP+
Sbjct: 1567 SSGTSAASIRLRHLLQQAGKLQSERPSFLLKLQVARCFQHLDAVYFPHNIDFRGRCYPLP 1626
Query: 619 PYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLD 678
P+LNH+G D+CR +L FAE + LG GL WLK+H+ANL+ GV+K+S R A+ + +
Sbjct: 1627 PHLNHMGDDICRSLLVFAEAKPLGPQGLGWLKVHIANLF--GVNKVSFAERQAWVDARRE 1684
Query: 679 DIFDSADKPLEGRRWWL---KAEDPFQCLAVCINLTEALRSSSPET--FISHIPVHQDGS 733
+ A+ PL R L +A+DP+Q L+ + L + + + F+S +P+HQDGS
Sbjct: 1685 QLLQVAEDPLNPRSLHLLEQEADDPWQALSALLELKKVVAHGEKNSAQFLSALPIHQDGS 1744
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF------ 787
CNGLQHYAALGRD G AVNL+ EKP DVYS + V + DA R
Sbjct: 1745 CNGLQHYAALGRDRRGGEAVNLIGGEKPRDVYSFVLEVVKQRVHADAARGSEGSGCSGAA 1804
Query: 788 ---PDALRAKLLLSQ--VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAEL 841
P++ A LL+ + RK+VKQTVMT YGVT IGARDQ+ R+L++ G ++EA L
Sbjct: 1805 PPPPESRLAALLIEHNLLQRKVVKQTVMTICYGVTAIGARDQVTRQLEDLIGETVDEATL 1864
Query: 842 FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL-GLPVVQPYRK 900
Y ++V L+++GE+FQ+A + WL E +K + PV W PL QPYR
Sbjct: 1865 KSLGGYLSRVVLSSIGEVFQSAMRLKKWLDEVSKTLNRLGLPVAWMLPLIHFGAEQPYRS 1924
Query: 901 LGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC------- 951
V+T Q I+ + + +QR FPPNF+HSLD +HMM+TA C
Sbjct: 1925 GKAMEVRTVFQTHIVRVAGDDTPTSASKQRLGFPPNFIHSLDATHMMLTARRCLLRDPPP 1984
Query: 952 -------RKAG------------LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
+ G + FA VHDSYWTHA DVD M ILR++FV LY PI
Sbjct: 1985 LVPPAFSQSVGGVETAWATPWKPMAFAAVHDSYWTHAGDVDRMRTILRQEFVRLYSQPIL 2044
Query: 993 ENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
E + + + PP P +G D+ EVL S YFF+
Sbjct: 2045 EEFYEGLRARLGRFAEDLPPPPTKGSLDITEVLHSDYFFH 2084
>gi|221485456|gb|EEE23737.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 2101
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/580 (38%), Positives = 314/580 (54%), Gaps = 67/580 (11%)
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK------ 564
+ LG+ WR+N VL V++ +W G + L R+ L E+ QLR+
Sbjct: 1529 VSALGSQAWRINKAVLGVMEAVWERGLEVGRLPPRDSAGL-----EEEIFQLRRVVSNPR 1583
Query: 565 ------WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMH 618
++R++ ++ + S+R LKL VAR + + Y+PHN+DFRGR YP+
Sbjct: 1584 SSGTSAASIRLRHLLQQAGKLQSERPSFLLKLQVARCFQHLDAVYFPHNIDFRGRCYPLP 1643
Query: 619 PYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLD 678
P+LNH+G D+CR +L FAE + LG GL WLK+H+ANL+ GV+K+S R A+ + +
Sbjct: 1644 PHLNHMGDDICRSLLVFAEAKPLGPQGLGWLKVHIANLF--GVNKVSFAERQAWVDARRE 1701
Query: 679 DIFDSADKPLEGRRWWL---KAEDPFQCLAVCINLTEALRSSSPET--FISHIPVHQDGS 733
+ A+ PL R L +A+DP+Q L+ + L + + + F+S +P+HQDGS
Sbjct: 1702 QLLQVAEDPLNPRSLHLLEQEADDPWQALSALLELKKVVAHGEKNSAQFLSALPIHQDGS 1761
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF------ 787
CNGLQHYAALGRD G AVNL+ EKP DVYS + V + DA R
Sbjct: 1762 CNGLQHYAALGRDRRGGEAVNLIGGEKPRDVYSFVLEVVKQRVHADAARGSEGSGCSGAA 1821
Query: 788 ---PDALRAKLLLSQ--VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER-GAPMEEAEL 841
P++ A LL+ + RK+VKQTVMT YGVT IGARDQ+ R+L++ G ++EA L
Sbjct: 1822 PPPPESRLAALLIEHNLLQRKVVKQTVMTICYGVTAIGARDQVTRQLEDLIGETVDEATL 1881
Query: 842 FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL-GLPVVQPYRK 900
Y ++V L+++GE+FQ+A + WL E +K + PV W PL QPYR
Sbjct: 1882 KSLGGYLSRVVLSSIGEVFQSAMRLKKWLDEVSKTLNRLGLPVAWMLPLIHFGAEQPYRS 1941
Query: 901 LGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC------- 951
V+T Q I+ + + +QR FPPNF+HSLD +HMM+TA C
Sbjct: 1942 GKAMEVRTVFQTHIVRVAGDDTPTSASKQRLGFPPNFIHSLDATHMMLTARRCLLRDPPP 2001
Query: 952 -------RKAG------------LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
+ G + FA VHDSYWTHA DVD M ILR++FV LY PI
Sbjct: 2002 LVPPAFSQSVGGVETAWATPWKPMAFAAVHDSYWTHAGDVDRMRTILRQEFVRLYSQPIL 2061
Query: 993 ENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
E + + + PP P +G D+ EVL S YFF+
Sbjct: 2062 EEFYEGLRARLGRFAEDLPPPPTKGSLDITEVLHSDYFFH 2101
>gi|347976143|ref|XP_003437401.1| unnamed protein product [Podospora anserina S mat+]
gi|170940259|emb|CAP65486.1| unnamed protein product [Podospora anserina S mat+]
Length = 1346
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 243/719 (33%), Positives = 367/719 (51%), Gaps = 69/719 (9%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE------- 248
Q ++E + + A + +R+ M E L + P + + W L+ I++E
Sbjct: 271 QSRLEKDTIDAAVDRWRKESQAMSEMGLGLSSPGLNARLFEWHTDLQRRISQEIKLAVES 330
Query: 249 ---QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
Q++ + PY Q D +A + + L+ L+ T G + + +
Sbjct: 331 EKRQKKTSDDLVRSQLTPYLLQSTPDRLAAVVILSLLSLVSTYGVDKGVPLTRVVHHLAS 390
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
++E+++R++K + K+ K +E+ K + + K + A +R
Sbjct: 391 SVEEDIRVYKATQSIPKEMARTQKA-------------REQKAKTLLKVAKARDYYAAKR 437
Query: 366 IVKGQDD-------------------FKP-WGQDARAKVGSRVIELLTQTAYIQSPAD-- 403
GQ++ +P W + K G+ ++ TA + +
Sbjct: 438 --GGQEEPAQAANDGKVFSSDLPLPILEPRWPATTKTKFGALLLGAFLDTAKVTVVREHP 495
Query: 404 QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP-YMPML 462
+ + + PAF+H S + + G KK GVI N ++ L+ R V+ ++PM+
Sbjct: 496 ETKELVSQMQPAFSH-----STQLRRG-KKVGVIVPNRALVDILKTEPRVEVLARHLPMV 549
Query: 463 VPPVKWTGYDKGAHFFLPSYVMRTHGAK--QQRDTVKRTPKKQLEPVFEALDTLGNTKWR 520
V P WT ++KG P+ V+R + QQ T + +E + + LD LG T WR
Sbjct: 550 VEPEPWTKWEKGGFIEYPTSVVRAKAQEKDQQIYTEAAIERGDMEQMMKGLDVLGQTAWR 609
Query: 521 VNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRK-WQWKVRNVKKENRE 578
+N +V V+ W+ G +A++ N ++P+P +PE D+ R+ W V+ V+ E
Sbjct: 610 INRKVFDVMLEAWNNGAEVANIPAVNPNLPMPPEPENLDDPLARRVWLKAVKAVENEKGG 669
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
HSQRC + +L +AR +D+ F++PHN+DFRGRAYP+ YLNH+G+D RG+L+FA+G
Sbjct: 670 LHSQRCFMNFQLEIARAFRDQT-FFFPHNLDFRGRAYPVPTYLNHMGADHMRGLLKFAKG 728
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAE 698
+ LG +GL WLKIHLAN+Y G DK S R F +L + DS PL G WWLKAE
Sbjct: 729 KPLGTNGLRWLKIHLANVY--GFDKASLAEREEFANENLQNALDSVRNPLNGNGWWLKAE 786
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
DP+QCLA C LT+AL P F+SH+P+HQDG+CNGLQHYAALG D GA VNL+
Sbjct: 787 DPWQCLATCFELTDALEHPDPTKFVSHLPIHQDGTCNGLQHYAALGGDAWGAEQVNLIPG 846
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
E+PADVYS +A V I DA AL+ K++ RK+VKQTVMT+VYGVT
Sbjct: 847 ERPADVYSAVADIVAKRIDHDADELKLDLAVALKGKIV-----RKVVKQTVMTNVYGVTR 901
Query: 819 IGARDQIKRRLKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECA 874
GAR QI ++L +E + A+ T AL MF+ A I WLGE
Sbjct: 902 TGARKQILKQLDALYPTIEADTGINPNVLASYCTSKVFDALSSMFKGAHDIQKWLGEIG 960
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 82/127 (64%), Gaps = 2/127 (1%)
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEKVMVKRQRTAFPPNFVHSLDG 941
+ WTTPL +PVVQPYR + T LQ L+L ++ V ++Q AFPPNF+HSLD
Sbjct: 1042 IVWTTPLRMPVVQPYRNTANRVIATCLQNLSLMDTNRSDPVNRRKQLQAFPPNFIHSLDA 1101
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
SHMM++A+ + GLTFA VHDS+WTHA DVD M+ I+R+ F+ ++E + L F+
Sbjct: 1102 SHMMLSALESDERGLTFAAVHDSFWTHASDVDIMSDIIRDSFIRIHEEDVIGRLKREFEA 1161
Query: 1002 SFPKLVF 1008
F V+
Sbjct: 1162 RFGDSVY 1168
>gi|148699720|gb|EDL31667.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Mus
musculus]
Length = 1078
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 225/556 (40%), Positives = 316/556 (56%), Gaps = 35/556 (6%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A P H S +
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARQGAQRSIPVLYHVYSFRS------YR 587
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 588 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 647
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD--RN 546
Q + +++ P QL +AL LGN WRVN +L ++ +I+ G + V R+
Sbjct: 648 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 707
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +++LRK ++ K RE HS R + +LS+A+ ++
Sbjct: 708 EAPRPARYQLPPGSTPVHKSELRK---ELARCLKVAREMHSLRSEALYRLSLAQHLR-HR 763
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 764 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 822
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+ + A+RS P
Sbjct: 823 KKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPA 882
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
+ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V Q+DA
Sbjct: 883 AYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDA 942
Query: 781 QRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
+ + LR A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 943 K-------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 995
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY
Sbjct: 996 -VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYH 1054
Query: 900 KLGRHTVKTSLQILTL 915
+ + VK LQ +TL
Sbjct: 1055 RESKVQVKGGLQSITL 1070
>gi|353230079|emb|CCD76250.1| t3/t7 bacteriophage-related mitochodrial DNA-directed rna polymerase
[Schistosoma mansoni]
Length = 976
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/503 (40%), Positives = 302/503 (60%), Gaps = 57/503 (11%)
Query: 576 NRERHSQRCDI---EL-KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+R+ + + C + EL +LS+A + +D+ ++PH++DFRGR YP P+ NH GSD+ R
Sbjct: 483 DRQDYGEFCSLWSTELYRLSIANQYRDKI-IWFPHSMDFRGRVYPCPPHFNHTGSDVARS 541
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
++ FA+G LG +GL WLKIHL NL G + +H RL + ++ ++DI DSA+KP +GR
Sbjct: 542 LIVFAKGLPLGPNGLDWLKIHLVNL-TGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGR 600
Query: 692 RWWLKAEDPFQCLAVCINLTEAL-RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
RWW +P+Q LA C+ L AL S PE+++SH PVHQDGSCNGLQHYAALGRD GA
Sbjct: 601 RWWQNQAEPWQILACCMELKNALSHPSGPESYVSHFPVHQDGSCNGLQHYAALGRDLRGA 660
Query: 751 AAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
+VNL + P D+YS + V + DA ++ AK L V RK++KQ++M
Sbjct: 661 KSVNLTSMNCPQDLYSDVVEIVEEQRRIDADGGNSI------AKTLEGFVRRKVIKQSIM 714
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
T+VYGVT GA +QI+++L++ +E+ L AS Y A++TL ++ ++F ++ I +WL
Sbjct: 715 TTVYGVTSYGATEQIRKQLRDLPDFPKES-LLPASRYLARLTLNSIEKVFTSSVDIQNWL 773
Query: 871 GECAKIIASENQP-VRWTTPLGLPVVQPYRKLGR-------HTVKTSLQILTLQRETEKV 922
+ AK I+ + Q V W TPLGLPV+QPY + + +TV Q++ ++ +
Sbjct: 774 CKIAKYISGDFQHRVSWQTPLGLPVIQPYIQSNKSSTDSDDYTVNFYSQLIDNNQKQIDL 833
Query: 923 MVK--------------RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
+ K +Q +AFPPNF+HSLD HMM+T + C K G+ FA VHD +WTH
Sbjct: 834 IKKDKIGDKLISLPKSSKQTSAFPPNFIHSLDSCHMMLTGLQCLKEGIVFASVHDCFWTH 893
Query: 969 ACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF-----------------PKLVF--- 1008
A VD++NRI RE+F+ L+ PI + D ++ F L F
Sbjct: 894 AATVDKLNRICREEFIALHSQPILSDFADYVKQRFGYTDKQINEFKNGKKREQALAFNRL 953
Query: 1009 -PPLPERGDFDLREVLGSPYFFN 1030
LP+RG FDL EV+ + YFF+
Sbjct: 954 LSNLPKRGSFDLSEVMKAEYFFS 976
>gi|256080007|ref|XP_002576275.1| t3/t7 bacteriophage-related mitochodrial DNA-directed rna polymerase
[Schistosoma mansoni]
Length = 976
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/503 (40%), Positives = 302/503 (60%), Gaps = 57/503 (11%)
Query: 576 NRERHSQRCDI---EL-KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+R+ + + C + EL +LS+A + +D+ ++PH++DFRGR YP P+ NH GSD+ R
Sbjct: 483 DRQDYGEFCSLWSTELYRLSIANQYRDKI-IWFPHSMDFRGRVYPCPPHFNHTGSDVARS 541
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
++ FA+G LG +GL WLKIHL NL G + +H RL + ++ ++DI DSA+KP +GR
Sbjct: 542 LIVFAKGLPLGPNGLDWLKIHLVNL-TGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGR 600
Query: 692 RWWLKAEDPFQCLAVCINLTEAL-RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
RWW +P+Q LA C+ L AL S PE+++SH PVHQDGSCNGLQHYAALGRD GA
Sbjct: 601 RWWQNQAEPWQILACCMELKNALSHPSGPESYVSHFPVHQDGSCNGLQHYAALGRDLRGA 660
Query: 751 AAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
+VNL + P D+YS + V + DA ++ AK L V RK++KQ++M
Sbjct: 661 KSVNLTSMNCPQDLYSDVVEIVEEQRRIDADGGNSI------AKTLEGFVRRKVIKQSIM 714
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
T+VYGVT GA +QI+++L++ +E+ L AS Y A++TL ++ ++F ++ I +WL
Sbjct: 715 TTVYGVTSYGATEQIRKQLRDLPDFPKES-LLPASRYLARLTLNSIEKVFTSSVDIQNWL 773
Query: 871 GECAKIIASENQP-VRWTTPLGLPVVQPYRKLGR-------HTVKTSLQILTLQRETEKV 922
+ AK I+ + Q V W TPLGLPV+QPY + + +TV Q++ ++ +
Sbjct: 774 CKIAKYISGDFQHRVSWQTPLGLPVIQPYIQSNKSSTDSDDYTVNFYSQLIDNNQKQIDL 833
Query: 923 MVK--------------RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
+ K +Q +AFPPNF+HSLD HMM+T + C K G+ FA VHD +WTH
Sbjct: 834 IKKDKIGDKLISLPKSSKQTSAFPPNFIHSLDSCHMMLTGLQCLKEGIVFASVHDCFWTH 893
Query: 969 ACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF-----------------PKLVF--- 1008
A VD++NRI RE+F+ L+ PI + D ++ F L F
Sbjct: 894 AATVDKLNRICREEFIALHSQPILSDFADYVKQRFGYTDKQINEFKNGKKREQALAFNRL 953
Query: 1009 -PPLPERGDFDLREVLGSPYFFN 1030
LP+RG FDL EV+ + YFF+
Sbjct: 954 LSNLPKRGSFDLSEVMKAEYFFS 976
>gi|453081581|gb|EMF09630.1| DNA/RNA polymerase [Mycosphaerella populorum SO2202]
Length = 1450
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 228/651 (35%), Positives = 340/651 (52%), Gaps = 67/651 (10%)
Query: 259 VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLE 318
+ Y PY + LP +A T+ +M R+ I + E E ++
Sbjct: 462 LVYGPYLELLPVKKVAANTILHVM-----------TRMAGDKNTITEQFESETKLGTLAI 510
Query: 319 KTKKKNETK---NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
K E++ + G ++ LR++ A+R + KG + +P
Sbjct: 511 NLSKALESEWLATVAGKGGKSASKKPHSTANLRRR-----------AIRALEKGIEKSRP 559
Query: 376 -----------------WGQDARAKVGSRVIELLTQTAYIQSPAD--QLADAPPDIFPAF 416
W + K+G+ ++ L +TA + + + + + PAF
Sbjct: 560 GKSKRKKEIQAALAQVEWPVSVKVKLGAMLVSKLMETAQLPVTREHPRTKEQVTQMQPAF 619
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLE-RTARHMVIPYMPMLVPPVKWTGYDKGA 475
H ++ K+ GV NP +++ ++ ++ MPM+VPP+ WTG+ KG
Sbjct: 620 MHRMKYYH------GKRVGVFMPNPALIQKIKSEPVGSLLAKRMPMVVPPLPWTGWAKGG 673
Query: 476 HFFLPSYVMR-THGAKQQRDTVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
+ + ++R G K +D +KQ L +++ L L W+++ V +V W
Sbjct: 674 YLHYSNPILRLAAGDKSGKDYFMAADEKQDLSTLYKGLTALSKVPWKIHRGVFNVQLEAW 733
Query: 534 SCGGRLADLVDRN-DVPLPEKPETE-DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
+ G +A+ N ++P+P +P++ D Q +WQ K R++ HS+RC +L
Sbjct: 734 NSGEEIANFAPLNPELPVPPEPDSSADPVQRLQWQQKCRDIANSRSGNHSKRCFQNFQLE 793
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+AR M +E Y+PHN+DFRGRAYP+ PYLNH+G+D RG+L F EG+ LG+SGL WLKI
Sbjct: 794 IARTMLNET-LYFPHNMDFRGRAYPIPPYLNHMGADNVRGLLVFGEGKELGESGLRWLKI 852
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
H+A + G DK S E R+ FT HLDDI+DSA PL GRRWWL+AED +Q LA C L
Sbjct: 853 HMATV--AGYDKASMEERIEFTMQHLDDIYDSAKNPLSGRRWWLQAEDAWQTLAACFELV 910
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
AL S P +ISH+PV QDG+CNGLQHYAALG D GAA VNL ++PADVY+ +A
Sbjct: 911 AALDSPDPTKYISHLPVQQDGTCNGLQHYAALGGDKAGAAQVNLEPSDRPADVYTAVAEA 970
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK- 830
V I +DAQ V A+ L ++ RK VKQ VMT+VYGVT+ GAR Q++R+L+
Sbjct: 971 VKAKIAKDAQDGNPV------AQKLDGRITRKCVKQPVMTNVYGVTFWGARVQVRRQLEA 1024
Query: 831 --ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS 879
+ L S Y + +LG+MF A+ I WLG+CA +A+
Sbjct: 1025 IFTESRHDDPVNLGLMSHYVTQKIFESLGQMFTGAQKIQDWLGQCADRVAT 1075
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 82/122 (67%), Gaps = 2/122 (1%)
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDG 941
V WTTPL LPVVQPYR V TS+Q ++++ + V ++Q AFPPNF+HSLD
Sbjct: 1135 VVWTTPLRLPVVQPYRASKSKIVSTSMQDISIRDPQVWDPVSRRKQLQAFPPNFIHSLDA 1194
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
+HM+++A+ C + G+TFA +HDS+WTHACDV+ M+ +LR+ FV ++ I L + F
Sbjct: 1195 THMLLSALKCTENGMTFASIHDSFWTHACDVNRMSEVLRDAFVAMHSEDIIGRLREEFNT 1254
Query: 1002 SF 1003
+
Sbjct: 1255 RY 1256
>gi|389583795|dbj|GAB66529.1| DNA-dependent RNA polymerase [Plasmodium cynomolgi strain B]
Length = 1486
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/644 (34%), Positives = 342/644 (53%), Gaps = 66/644 (10%)
Query: 434 YGVIECNPLVLKGLERTA--RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
YGVI L A H+ + ++PM+ P KWT + +G L + +R +
Sbjct: 862 YGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKWT-HSEGGMILLKNNFIRCNVKPL 920
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
V LE + + +GN +W++N+ +L +++ + G + ++ + + LP
Sbjct: 921 FNIDVC-----NLERIKNIVSQIGNIRWKINDEILYLIEYAYMNGITIGNIPRKQNYVLP 975
Query: 552 EKP---ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNV 608
P ++ ++K+ + + N+ C L +A+ +K+ E Y+PHN+
Sbjct: 976 NSPLDMTKKNADDIKKYYLLREEISRLNK------C-----LIMAKTLKNCEVIYFPHNI 1024
Query: 609 DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG 668
DFRGR YP+ P+L+H+ D+CR ++ F + +G GL WLK+HLAN + G DKL+ E
Sbjct: 1025 DFRGRMYPLSPHLHHMSDDICRSLITFHDKEEIGPRGLFWLKVHLANNF--GKDKLNFEQ 1082
Query: 669 RLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728
R+++ + +L +I ++ P E +W AE P+Q L+V I+LT+A++ P + S+IPV
Sbjct: 1083 RISWVDANLGNIKRLSENPFEHMEFWNLAEKPWQALSVAIDLTKAMQCPDPSKYRSNIPV 1142
Query: 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD--------- 779
QDG+CNGLQHYAALGRD G AVN++ ++P D+Y+ + V I+ D
Sbjct: 1143 QQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTVVLEIVRSKIRADLDGAAVTPT 1202
Query: 780 -----------AQRDPAVFPD-----ALRAKLLLSQVD------------RKLVKQTVMT 811
A V D A ++ S+ D RK+VKQT+MT
Sbjct: 1203 GGSSGTSGGVSADSSSGVSGDISGGGAPKSSSTYSRGDLAQYCFQFDLLKRKVVKQTIMT 1262
Query: 812 SVYGVTYIGARDQIKRRLKER-GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
YGVT +GA+DQ+K +++ +++ + S Y A ++ E+F+ A I W
Sbjct: 1263 ICYGVTSVGAKDQVKGKIQNMISKVVDKNAISQLSQYIANYIFESISEIFKRAMIIKKWF 1322
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK-RQRT 929
+K+ N PV W +P+GLP QPYR R V T LQ +++ ++ K +QR
Sbjct: 1323 NNLSKVTNELNIPVTWLSPIGLPCEQPYRLGQRILVNTPLQSVSVISYQNSLLHKNKQRL 1382
Query: 930 AFPPNFVHSLDGSHMMMTA-VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYE 988
FPPNFVHSLD SH+MMTA + L+FA VHDSYW HAC+VD MNR +R+ FV LY+
Sbjct: 1383 GFPPNFVHSLDASHLMMTAEKMILENNLSFAAVHDSYWAHACNVDLMNRFIRDSFVTLYD 1442
Query: 989 MPIFENLLDSFQKSFPKLV--FPPLPERGDFDLREVLGSPYFFN 1030
PI +NL ++Q K P PE+G D+ V S YFF+
Sbjct: 1443 EPILQNLYQNYQMRLGKHASRIPAPPEQGLLDVSLVRHSRYFFS 1486
>gi|403221340|dbj|BAM39473.1| DNA-directed RNA polymerase precursor [Theileria orientalis strain
Shintoku]
Length = 1221
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 233/644 (36%), Positives = 339/644 (52%), Gaps = 53/644 (8%)
Query: 415 AFTHALRTVSKETKGGSKKYGVIEC-NPLVLKGLERTARHMV-IPYMPMLVPPVKWTGYD 472
AF H L + G K +GV+E +L+ + A+ ++ + +PM+ P KW
Sbjct: 603 AFRHVL------LRQGIKTFGVLEMRESCMLQLRDFVAKSLLSLAALPMVCRPKKWINAT 656
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
G L +R G+K V LE VF+ ++ W +N +L ++ I
Sbjct: 657 TGGSLLLKHNFIR--GSKLNEVKVY-----DLEGVFDIVNRFSQVPWVINRDMLQIIKAI 709
Query: 533 WSCGGRLADLVDRNDVPLPE-KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
+ D N +P+ + P T + K N ++ S+ ++
Sbjct: 710 NN---------DPNSIPMKQFVPITGNNGISGNNGVSGGADTKLNSDQLSELSLFLRRIK 760
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
+A +E+ Y P N+DFRGR YP+ PYLNH+ DLCR +L F+E R +G+ GL WLKI
Sbjct: 761 IADSFVNEKKLYVPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSERRRMGERGLFWLKI 820
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE--GRRWWLKAEDPFQCLAVCIN 709
H++N++ G DK S E R+ + + H I D P + +W KA+ PFQ A +
Sbjct: 821 HVSNMF--GNDKKSFEERIRWVDEHYAIIADLTRNPWGDFNQNFWAKADKPFQFFAASLE 878
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L A+ S P + ++IP+ QDG+CNGLQHYAALG D GA VN+V +P D+YS I
Sbjct: 879 LVRAVESGDPANYRTNIPIQQDGTCNGLQHYAALGLDEEGARYVNMVDAAEPQDLYSHIL 938
Query: 770 ARVLVIIQRD---AQRDP---------------AVFPDALR-AKLLLSQ--VDRKLVKQT 808
V+ + +D A DP A R A+L ++ + RK+VKQT
Sbjct: 939 QVVIKKVYQDLNSAAGDPGTDTGHAGKRKTDGKATLESNRRHAELCINNNLLSRKVVKQT 998
Query: 809 VMTSVYGVTYIGARDQIKRRLKE--RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGI 866
VMT YGVT +GA DQ++ +LK+ + A + EAEL G + Y A LT++ +F A GI
Sbjct: 999 VMTICYGVTRVGAIDQVEAKLKDVKKVAQLPEAELRGLATYLATKILTSITSVFSRAMGI 1058
Query: 867 MSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKR 926
+WL E + + N PV W +P+GLP QPY TVKT LQ + + R V +R
Sbjct: 1059 KNWLDEISLLHNQHNVPVTWISPVGLPCEQPYCLSVTKTVKTPLQAINVARYVPGVDKRR 1118
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVEL 986
Q+ AFPPNF+HSLD +H+M+TA +FA VHD++W H VD M+R +RE+FV +
Sbjct: 1119 QKLAFPPNFIHSLDAAHLMLTARRMFAHTQSFAAVHDNFWVHPDHVDLMHRCIREEFVAM 1178
Query: 987 YEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ PI E+L S ++ F P P +G DL VLGS YFF+
Sbjct: 1179 HSRPILEDLHKSVVSRL-QVPFRPPPSKGSLDLNLVLGSRYFFH 1221
>gi|341876528|gb|EGT32463.1| hypothetical protein CAEBREN_29975 [Caenorhabditis brenneri]
Length = 1223
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 224/578 (38%), Positives = 318/578 (55%), Gaps = 52/578 (8%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSY----VMRTHGAKQQRDTVKR--TPKKQLEPVFEALD 512
+PM VPP W G + S M A + D +++ T Q PVF+AL+
Sbjct: 529 LPMTVPPRPWIDKGTGGPLYKTSQEIIRKMLEFKAVRLNDEMRQRITSPSQARPVFDALN 588
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLAD--LVDRNDVPL-------PE--------KPE 555
LG+T W +N +L L ++ A L+++ +P+ P+ K E
Sbjct: 589 QLGSTPWVINEPMLDTLKEVFEKSKDSASEPLLEKLGIPMRHDTFDIPDFVREFGKVKRE 648
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
D + R++ K K E +S C ++ ++ +A + ++PHN+DFRGR Y
Sbjct: 649 DVDVDRFREYAKKKAEAVKARNESNSLWCWMQYRVVLADHFRGR-TLFFPHNMDFRGRVY 707
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
P+ PYL+H+G D+ R IL+FA+ + LG G WLK+H NL G + + S R+ E
Sbjct: 708 PLSPYLSHMGDDVNRCILKFAKSQPLGDKGYDWLKLHCINL-TGTMKRASVADRMLEAER 766
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSC 734
L I DSA PL G +WW+ +++P+Q LA C+ + +A S F S +PVHQDGSC
Sbjct: 767 LLPLILDSARNPLGGEKWWMSSDEPWQTLAACVEIEQATHFGSDIPLFPSQLPVHQDGSC 826
Query: 735 NGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAK 794
NGLQHYAALGRD G VNL E P DVYS +A R ++ D V AL+ +
Sbjct: 827 NGLQHYAALGRDNEGGVQVNLTRCETPNDVYSDVAMR----LESTTSEDHDV---ALKLR 879
Query: 795 LLLSQ-VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
L Q V RK++KQTVMT+VYGVT GA QIKR+LK P E+ + + Y A+ T
Sbjct: 880 QSLPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKALDIPGEDFQAALFARYLARKTF 939
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
+L + F ++ + W AK + + V W TPLGLPVVQPY +L
Sbjct: 940 ASLNDAFTSSMALKDWFRLIAKGASDLTKTVEWITPLGLPVVQPYCRL------------ 987
Query: 914 TLQRETEKVMV---KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHAC 970
++R ++ V+V +Q AFPPNFVHSLD +HMM+T++ C G+TFA VHD +WTHA
Sbjct: 988 -VERRSKLVLVPIPMKQVDAFPPNFVHSLDSTHMMLTSLNCSDRGITFAAVHDCFWTHAN 1046
Query: 971 DVDEMNRILREKFVELYEMPIFENLLDSFQKSF--PKL 1006
VDEMN I R++FV L+ PI E + F+K++ PK+
Sbjct: 1047 SVDEMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKI 1084
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 18/117 (15%)
Query: 838 EAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQP 897
+A LF Y A+ T +L + F ++ + W AK + + V W TPLGLPVVQP
Sbjct: 1119 QAALFAR--YLARKTFASLNDAFTSSMALKDWFRLIAKGASDLTKTVEWITPLGLPVVQP 1176
Query: 898 YRKLGRHTVKTSLQILTLQRETEKVMV---KRQRTAFPPNFVHSLDGSHMMMTAVAC 951
Y +L ++R ++ V+V +Q AFPPNFVHSLD +HMM+T++ C
Sbjct: 1177 YCRL-------------VERRSKLVLVPIPMKQVDAFPPNFVHSLDSTHMMLTSLNC 1220
>gi|328769272|gb|EGF79316.1| hypothetical protein BATDEDRAFT_35464 [Batrachochytrium dendrobatidis
JAM81]
Length = 1404
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/548 (38%), Positives = 315/548 (57%), Gaps = 44/548 (8%)
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQDDFKP-WGQDARAKVGSRVIELLTQTAYIQSPADQLA 406
RK +++KKQ + D + P WG++A+ K+G+ ++ LL Q I A Q+
Sbjct: 577 RKIAAEMLKKQ--------TRLNDIWVPNWGEEAKVKIGTFLLHLLVQAGKI---AVQVP 625
Query: 407 D-------APPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYM 459
D D+ PAF H K K YG I + V++ +E ++ ++
Sbjct: 626 DPNKPGHKMSMDV-PAFEH------KVLSSYGKTYGYIIRHAAVMEMMENGCASVLPLHL 678
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEP-VFEALDTLGNTK 518
PMLV P W ++G + S ++R + R+ +K + P V A+D LG+T
Sbjct: 679 PMLVQPRPWLSCNRGGYLQHGSQLVRILNNPEHREYLKAADEANHLPLVLRAVDKLGSTA 738
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKK--EN 576
W +N + V W+ + +P KP D +W++ +N K+ +
Sbjct: 739 WVINPIIYKVASTFWNKKESAPSIPKPIVIPEIPKPSDYDTNPDARWKYIKKNTKRLQQI 798
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
HSQRCD+ K+ +ARK E ++PHN+DFRGRAYPM P LNH+G+DLCRG+L+F
Sbjct: 799 SNNHSQRCDLNYKMEIARKYLGE-TIFFPHNLDFRGRAYPMPPNLNHIGNDLCRGLLKFK 857
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+ LG++G+ WLKI ++NL G DK S + R F E+H DI DSA+ PL+G+RWWLK
Sbjct: 858 VAKPLGENGMRWLKIQVSNL--AGNDKASLDNRAKFAEDHRKDIIDSAEHPLDGKRWWLK 915
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
+E+P+Q LA CI L +A + +P F+S I +HQDGSCNGLQHYAALG D GA VNL
Sbjct: 916 SENPWQLLATCIELNQAWKCDNPLEFMSSIHIHQDGSCNGLQHYAALGGDVDGAKVVNLT 975
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGV 816
E P DVYS ++ +V+ ++++ A+++ P+AL LLL++++RKLVKQTVMT+ YG+
Sbjct: 976 RSEVPQDVYSSVSNQVMKLVKQQAEQN---VPEAL---LLLNRINRKLVKQTVMTNTYGI 1029
Query: 817 TYIGARDQIKRRL-----KERG-APMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
T+ GA DQ++ RL KE G + + +L + +A ++ ++G +F+ AR I WL
Sbjct: 1030 TFSGAHDQVRNRLLEARVKESGDKALTDEQLHACALFATRLIFQSMGTIFEGARAIQVWL 1089
Query: 871 GECAKIIA 878
E A IIA
Sbjct: 1090 NETANIIA 1097
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 105/190 (55%), Gaps = 43/190 (22%)
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEK--VMVKRQRTAFPPNFVHSLDG 941
V WTTPLG P+VQPYR +KT++Q T+ + V ++Q TAFPPNF+HSLD
Sbjct: 1215 VIWTTPLGFPIVQPYRSHETAEIKTAMQSFTIYNHNDPAPVNARKQSTAFPPNFIHSLDA 1274
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF----ENLLD 997
SHMM++A+AC + + FA VHDSYWTHACDVDEMN+ILRE FV L+ I E L++
Sbjct: 1275 SHMMLSAIACDASNIEFAAVHDSYWTHACDVDEMNKILREAFVRLHSENIMIRLREELIE 1334
Query: 998 SF--QKSFPK-----------------------------------LVFPPLPERGDFDLR 1020
+ QK K + F LP+RG FD++
Sbjct: 1335 RYKTQKVMVKVPIKGDRNVEMWNQHLLATGRKQKKKESSVVAWVDIAFDELPKRGAFDIQ 1394
Query: 1021 EVLGSPYFFN 1030
+V S YFF+
Sbjct: 1395 QVRDSIYFFH 1404
>gi|452978725|gb|EME78488.1| hypothetical protein MYCFIDRAFT_205064 [Pseudocercospora fijiensis
CIRAD86]
Length = 1345
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 230/691 (33%), Positives = 358/691 (51%), Gaps = 36/691 (5%)
Query: 208 ANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERC-------RMAKHKVA 260
A E + + +D ++ + + M +L W+ L A+ E + R +
Sbjct: 277 ATEQKGIGLDSIKRATSGHSRPMAALMWQWYRKLLPALEFELQEAKKTMTDMRKIDDRNV 336
Query: 261 YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKT 320
Y PY + LP +A T+ +M + G + A + + I +
Sbjct: 337 YGPYLEMLPIKKVAANTILFIMTRMANGKDRSTGVYASEAKLNSLTVTLSKSIEAECLAS 396
Query: 321 KKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDA 380
+ + ++ + + ++ + + KK D ++ + W
Sbjct: 397 VARQKASAPQNRKTNTTSHIRRQAVSALKKGIDKANTSPKTKAKKASQAMLAEVEWPLVV 456
Query: 381 RAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGV 436
AK+G+ ++ + + A++ Q P + + + PAF H L K KG KK G+
Sbjct: 457 HAKLGAMLVSKVLECAHLPVTRQHP--RTKEMITQMQPAFLHRL----KYEKG--KKTGI 508
Query: 437 IECNPLVLKGLE-RTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAKQQRD 494
I NP +L L+ ++ MPM+V P WTG+ G + + V+R G K ++
Sbjct: 509 ISPNPALLDKLQSEPVGSLIAKRMPMVVEPKPWTGWSDGGYLHYSNPVLRLQQGDKSSKE 568
Query: 495 TVKRTPKKQ-LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPE 552
+ L+ +++ L LG W+V+ V V W+ G +A+ N ++ +P
Sbjct: 569 YFMAADQNNDLDTLYKGLTALGKVPWKVHQEVFKVQLEAWNSGEAIANFAPLNPEMKMPP 628
Query: 553 KPETE-DEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFR 611
+P++ D + RKW ++R + + HS+RC +L +AR + +E Y+PHN+DFR
Sbjct: 629 EPDSSADPLERRKWLAEIRALDNKKGGYHSKRCFQNFQLEIARTLLNET-LYFPHNMDFR 687
Query: 612 GRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLA 671
GRAYP+ PYLNH+G+D RG+L FA+G+ LG++GL WLKIH+A + G DK S E R+
Sbjct: 688 GRAYPIPPYLNHMGADNVRGLLVFADGKELGENGLRWLKIHMATV--AGHDKASLEERVE 745
Query: 672 FTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQD 731
FT HLDDI+DS PL GRRWWL+AED +Q LA C LT AL S P F+SH+PV QD
Sbjct: 746 FTMGHLDDIYDSVRDPLGGRRWWLQAEDAWQTLAACFELTAALDSPDPTKFVSHLPVQQD 805
Query: 732 GSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDAL 791
G+CNGLQHYAALG D GAA VNL ++PADVY+ +A V +++D + +
Sbjct: 806 GTCNGLQHYAALGGDKAGAAQVNLEPSDRPADVYTAVAEAVKAEVEKDVKEGNPI----- 860
Query: 792 RAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE---AELFGASCYA 848
A+ L ++ RK VKQ VMT+VYGVT+ GAR Q++++L+ + E L S Y
Sbjct: 861 -AQKLQGRITRKCVKQPVMTNVYGVTFFGARAQVRKQLEVLFPEVTEYDTVNLGNMSHYV 919
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKIIAS 879
A +LGEMF A+ I +WLG+CA I++
Sbjct: 920 ALKIFKSLGEMFAGAQAIQNWLGQCADRIST 950
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 85/127 (66%), Gaps = 2/127 (1%)
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDG 941
V WTTPL LPVVQPYR V TS+Q + LQ + V ++Q AFPPNF+HSLD
Sbjct: 1034 VVWTTPLRLPVVQPYRSAKSKIVLTSMQAIALQDPQVWDPVSRRKQLQAFPPNFIHSLDA 1093
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
+HM+++A+AC + +TFA +HDS+WTHACDV+ ++ +LR+ F+ ++E I L + F+
Sbjct: 1094 THMLLSALACDQENMTFASIHDSFWTHACDVNRLSEVLRDAFIAMHEEDIIARLREEFET 1153
Query: 1002 SFPKLVF 1008
+ ++
Sbjct: 1154 RYKGCMY 1160
>gi|452838720|gb|EME40660.1| hypothetical protein DOTSEDRAFT_74265 [Dothistroma septosporum NZE10]
Length = 1467
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 242/725 (33%), Positives = 371/725 (51%), Gaps = 51/725 (7%)
Query: 182 RGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPL 241
R + L+ V I + W KA E +++ + Q + +L W++ L
Sbjct: 371 RKQAHARQERLEKTSVDIAIDRWRKADEELKKIGIHTAMQSRP-----IGALMWQWYDSL 425
Query: 242 RDAIAKEQERCRMA-----------KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE 290
A+ KE E + + Y PY + LP +A T+ M + G
Sbjct: 426 LPALEKELEEVKKTLGESVLGTPGEHDRHTYGPYLELLPLKKVAANTILYTMAQMARGQR 485
Query: 291 HG-------RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTE 343
+ A + Q + +AIE E K + + +N + + +
Sbjct: 486 NSGDTWKEQEAALGQITVGLANAIEDEC-TADMSSKQQGRKSVQNARNPARLRKQALRSL 544
Query: 344 QEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD 403
Q + KK + + + Q + W + K+G+ + L +TA + +
Sbjct: 545 QVAQKADSASKKKKGRSKETNQQILSQLE---WPVSMKVKLGAMLTSKLIETAQLPVTRE 601
Query: 404 --QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNP-LVLKGLERTARHMVIPYMP 460
+ + PAF H + K KG K+ G++ NP L++K ++ MP
Sbjct: 602 HPRTKQKITQMQPAFLHRM----KWQKG--KRVGMVTPNPALLVKMQSEPLGSLLAKRMP 655
Query: 461 MLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDT-VKRTPKKQLEPVFEALDTLGNTK 518
M+V P W G+ G + + ++R G K +D + +K+L+ V++ L L
Sbjct: 656 MVVEPKPWQGWKDGGYLHYSNDILRLPAGDKSGKDYFMAADRRKELDTVYKGLTALSKVP 715
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDV-PLPEKPETEDEAQLRKWQWKVRNVKKENR 577
W+VN+ V V W+ G +A+ + + LP +P++ D RKW +V+ ++ +
Sbjct: 716 WKVNHDVFKVQLEAWNSGDAIANFAPLHPIISLPPEPDSSDAVARRKWLSEVKELENKKS 775
Query: 578 ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE 637
HS+RC +L +AR + +E Y+PHN+DFRGRAYP+ PYLNH+G+D R +L FAE
Sbjct: 776 GLHSKRCFQNFQLEIARTVLNET-LYFPHNMDFRGRAYPIPPYLNHMGADNVRSLLTFAE 834
Query: 638 GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
GR LG++GL WLKIHLA + G DK S R+AFTE HLDDI+DS PL+GR+WWL+A
Sbjct: 835 GRELGENGLRWLKIHLATV--AGHDKASMSERVAFTEEHLDDIYDSVRNPLDGRKWWLEA 892
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA 757
ED +Q LA C LT+AL S P F+S++PV QDG+CNGLQHYAALG D GA VNL
Sbjct: 893 EDAWQTLAACFELTKALDSLDPTKFVSYLPVQQDGTCNGLQHYAALGGDKAGAKQVNLEP 952
Query: 758 REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVT 817
++PADVY+ +A V I+RDA A+ A+ L ++ RK VKQ VMT+VYGVT
Sbjct: 953 GDRPADVYTAVADAVKEEIERDAAAGNAI------AQKLHGRLTRKCVKQPVMTNVYGVT 1006
Query: 818 YIGARDQIKRRLKERGAPMEEAEL--FG-ASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
+ GAR Q++++L++ + + FG S Y A +LG MF A+ I +WLG+CA
Sbjct: 1007 FYGARAQVRKQLEDLFPEVHAHDTVNFGNMSHYVATKIFKSLGTMFTGAQAIQNWLGQCA 1066
Query: 875 KIIAS 879
+++
Sbjct: 1067 DRVST 1071
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 2/127 (1%)
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRET--EKVMVKRQRTAFPPNFVHSLDG 941
V WTTPL LPVVQPYRK V TS+Q L+LQ + V ++Q AFPPNF+HSLD
Sbjct: 1152 VVWTTPLRLPVVQPYRKSKSRIVTTSMQNLSLQEPQVWDPVSKRKQLQAFPPNFIHSLDA 1211
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
+HM+++A+ C + G+TFA +HDS+WTHACDV+ M ILR+ F+ ++ I L + F+
Sbjct: 1212 THMLLSALRCSENGMTFAMIHDSFWTHACDVNRMGEILRDAFIAMHSEDIIGRLREEFET 1271
Query: 1002 SFPKLVF 1008
+ ++
Sbjct: 1272 RYKGCMY 1278
>gi|332850851|ref|XP_003316023.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Pan
troglodytes]
Length = 1273
Score = 365 bits (938), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 232/605 (38%), Positives = 331/605 (54%), Gaps = 54/605 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + + P H + R V
Sbjct: 676 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVYSFRNV-------- 726
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 727 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 786
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 787 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 846
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ +V + +K RE HS R + +LS+A+ ++D
Sbjct: 847 SEAPQPPEAHLPHSAAPARKAELRR---EVVHCQKVAREMHSLRAEALYRLSLAQHLRDR 903
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 904 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 961
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR---- 715
+ RLAF E +D I DSAD+PL +A P C L A
Sbjct: 962 LKKREPLRKRLAFAEEVMDHILDSADQPLT------RAGAPVHLAGGCTALGTARPGGWF 1015
Query: 716 -----SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
S+S + P+ QDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA
Sbjct: 1016 GVPHVSASLGSISRLPPLPQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAA 1075
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
+V V ++DAQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+
Sbjct: 1076 QVEVFRRQDAQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLR 1129
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
E +E ++ AS Y + +L EMF R I WL E A++I+ V W TPL
Sbjct: 1130 ELSDFPQEF-VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPL 1188
Query: 891 GLPVVQPYRKLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
G+PV+QPYR + + +Q +T + K ++Q+ FPPNF+HSLD SHMM+
Sbjct: 1189 GVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMML 1248
Query: 947 TAVAC 951
TA+ C
Sbjct: 1249 TALHC 1253
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 109/175 (62%), Gaps = 26/175 (14%)
Query: 683 SADKPL----EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQ 738
S +KP E WW+ AE+P+Q LA C+ + A+R+S P ++SH+PVHQDGSCNGLQ
Sbjct: 416 SVEKPTLPSKEVTHWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQ 475
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD------------AQRDPAV 786
HYAALGRD++GAA+VNL + P DVYSG+AA+V + A R PAV
Sbjct: 476 HYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVECALLPGGISAWGQSGLTRAPRPPAV 535
Query: 787 FPDALR----------AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 831
+ R A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 536 QVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 590
>gi|320593395|gb|EFX05804.1| mitochondrial DNA-directed RNA polymerase [Grosmannia clavigera
kw1407]
Length = 1496
Score = 365 bits (936), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 243/731 (33%), Positives = 373/731 (51%), Gaps = 70/731 (9%)
Query: 183 GMGSGKYRMLKMR-QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPL 241
G+G + R ++ R + T A E+ +E ELL L + S W + L
Sbjct: 351 GLGLAERREIQSRLERDCVTAAVERWRDENEELLKIGMNTSL--TTASLNSRLYEWHKDL 408
Query: 242 RDAIAKEQERCRMAK----------HKVAYAPYFDQLPADMMAVITM-HKLMGLLMTGGE 290
+A+E ++ +++ + Y P+ Q +A +T+ L L M G +
Sbjct: 409 ELRLAQELKKVDLSEATKNKNKEDLDRCLYGPFLQQSATSRLAAVTIVSTLSSLAMQGVD 468
Query: 291 HGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK 350
G IG+ I Q ++ + K + + + + + ++ +K
Sbjct: 469 KG--------VSIGNVITQIAKVAEEDIKLQAEAKQQASHGRKMSARLAAKQAAKQALRK 520
Query: 351 VTDLIKKQKLPAVRRIVKGQD------DFKP-------WGQDARAKVGSRVIELLTQTAY 397
+ L++ KL + + D +P W +AKVG+ ++ +L +TA
Sbjct: 521 SSVLLRGTKLATAAEAKEDEPVPTLVADREPAAGKEMTWPITIKAKVGAALLSMLLETAK 580
Query: 398 IQSPADQLADAPPDIFPAFTHALRTVSK--ETKGGSKKYGVIECNPLVLKGLERTAR-HM 454
+ + + P+ + S+ + K G KK G++ NP +++ ++R R
Sbjct: 581 VTAVKEH-----PETKTLISQQQPAFSRLNQLKRG-KKVGMLIANPTLVELMKREPRADF 634
Query: 455 VIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTP--KKQLEPVFEALD 512
+ ++PM+V P WT + KG P+ ++R +++ + + ++ V LD
Sbjct: 635 LARHLPMVVEPAPWTRFYKGGFLESPAPLVRVKDSRKDQKMYAEAAIQRGDMDQVLRGLD 694
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVPLPEKPET-EDEAQLRKWQWKVR 570
LG T W+VN V +V+ W+ G +A++ D+ +P +P++ ED + R+W V+
Sbjct: 695 VLGRTAWKVNRPVFAVMLEAWNTGEEIAEIPPLTPDISVPAEPDSSEDPMKRRQWLKAVK 754
Query: 571 NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
+ + HS RC ++ +AR +D+ FY+PHNVDFRGRAYP+ PY NH+G+D R
Sbjct: 755 AAENQRSGLHSVRCFTNFQMEIARAFRDQT-FYFPHNVDFRGRAYPIPPYFNHMGADNVR 813
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
G+L FA+G+ LG+SGL WL++HLAN++ G DK S R AF +LD I DSA PL G
Sbjct: 814 GLLTFAKGKQLGESGLRWLQVHLANVF--GYDKASLSDRAAFAMENLDKIRDSATAPLTG 871
Query: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
+RWWL+AEDP+QCLA C L AL P T+ SH+PVHQDG+CNGLQHYAALG D+ GA
Sbjct: 872 QRWWLEAEDPWQCLAACFELKAALDLEDPTTYESHLPVHQDGTCNGLQHYAALGGDSWGA 931
Query: 751 AAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
VNL ++PADVYS +A V I D R A AK L + RK+VKQTVM
Sbjct: 932 RQVNLEPSDRPADVYSAVADIVKESIAEDLARGDA------NAKALTGLIKRKVVKQTVM 985
Query: 811 TSVYGVTYIGARDQIKRRL--------KERGAPMEEAELFGASCYAAKVTLTALGEMFQA 862
T+VYGVT+ GAR Q+ ++L + G P + AS A K+ AL MF
Sbjct: 986 TNVYGVTFAGARKQVLKQLDALYPTLQADSGIPT----MLLASYIATKI-FKALSTMFGG 1040
Query: 863 ARGIMSWLGEC 873
A I SWLGE
Sbjct: 1041 AHDIQSWLGEV 1051
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Query: 886 WTTPLGLPVVQPYRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSH 943
WTTPL +PVVQPYRK T++T LQ IL++ + V ++Q AFPPNF+HSLD SH
Sbjct: 1167 WTTPLRMPVVQPYRKAASRTIETCLQDLILSVPSRADPVHKRKQLQAFPPNFIHSLDASH 1226
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
M+++A+ C + GL FA VHDS+WTHA DVD MNR+LR+ FV ++
Sbjct: 1227 MLLSALECDERGLDFAAVHDSFWTHAADVDTMNRVLRDAFVRIH 1270
>gi|294658854|ref|XP_461193.2| DEHA2F19470p [Debaryomyces hansenii CBS767]
gi|202953437|emb|CAG89581.2| DEHA2F19470p [Debaryomyces hansenii CBS767]
Length = 1271
Score = 360 bits (925), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 224/651 (34%), Positives = 334/651 (51%), Gaps = 73/651 (11%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMV--IPYMPMLVPPVKWTG 470
FPAF + KK GVI+ +P + + + V Y+PML PP WT
Sbjct: 482 FPAFLWGY--LRNHDSPAYKKTGVIKIHPYLSEEFKSYESFFVDRSLYLPMLCPPKPWTS 539
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVL 529
G + ++ T + + K QL+ ++E L+ LG+ W +N L++
Sbjct: 540 PVVGGYLNDLKPIINTDDISTSLFYLNKAHKTGQLKSLYEGLNVLGSLAWAINPSTLNIF 599
Query: 530 DRIWSCGGRLADL---VDRNDVPLPE---KPETEDEAQLRKWQWKVR-NVKKENRERH-- 580
++ S + + V LP+ KP+ E++ K WK R V K +E H
Sbjct: 600 NQAMSVNKEFLKIPPNFNELQVILPQEPKKPDYSSESEYNKAIWKYRIQVGKSLQEYHAI 659
Query: 581 -SQRCDIELKLSVARKM-KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
SQR ++ L +A K+ + FY PHNVDFRGRAYPM L+H DL R +L F
Sbjct: 660 KSQRVELNLIQQLANSFNKNGDMFYLPHNVDFRGRAYPMVSLLSHYQDDLVRSLLMFWFA 719
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAE 698
+ LG +G +WLK LA +Y G DKLS + R+ F + +L+ I DSA+ P++G+ WW E
Sbjct: 720 KPLGPNGFNWLKYQLAGVY--GKDKLSMDERIDFIDKNLNLIVDSAENPIKGKMWWKSGE 777
Query: 699 DPFQCLAVCINLTEALR-----SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
P+Q L++C + + L+ + E ++ IP+HQDGSCNGLQHYAALG+D G +V
Sbjct: 778 KPWQTLSLCFEINKVLQYCQNDGNKVEEYLCRIPIHQDGSCNGLQHYAALGKDKEGGISV 837
Query: 754 NLVAREKPADVYSGIAARVLVIIQRDA---QRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
NL+ + + S + VL I++ +DP+ L A L LS + RK+VKQTVM
Sbjct: 838 NLLQTDSSRPIRSDVYTEVLNIVKDQVLKHSQDPSNQYQEL-AALALSILSRKVVKQTVM 896
Query: 811 TSVYGVTYIGARDQIKRRLKE------------RGAPMEEAEL-------FGASCYAAKV 851
TSVYGVT GA QI R+KE G P+ + S Y A
Sbjct: 897 TSVYGVTRHGATLQINMRIKEIIKNFEVQLNEGNGIPITPEQFSKLKILNVEVSNYLAST 956
Query: 852 TLTALGEMFQAARGIMSWL-GECAKIIASEN------------------------QPVRW 886
L ++ ++F A+ I WL C +II S + +P+ W
Sbjct: 957 VLNSITKLFSGAKLIQDWLLCNCFRIINSFDLETFQSLTRLNKKEVIDFFNPQLYKPMMW 1016
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE--KVMVKRQRTAFPPNFVHSLDGSHM 944
T+ G PV+Q Y+ + + TSLQ + + + ++ + V++Q A PNF+HS+D HM
Sbjct: 1017 TSMSGFPVIQLYKHTKQKALPTSLQSIIINKPSKLANIDVRKQLNAVAPNFIHSIDSIHM 1076
Query: 945 MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
+MT ++ K + F VHDS+WT CDV++++RI+RE+FV L+ I ENL
Sbjct: 1077 LMTCISAEKNNIPFVSVHDSFWTLPCDVNKLSRIIREEFVRLHSSNIIENL 1127
>gi|448106266|ref|XP_004200703.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|448109383|ref|XP_004201334.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|359382125|emb|CCE80962.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|359382890|emb|CCE80197.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
Length = 1253
Score = 355 bits (912), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 213/657 (32%), Positives = 342/657 (52%), Gaps = 72/657 (10%)
Query: 403 DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP--YMP 460
DQ + D +PAF + + ++K KK G + +P + + + + Y+P
Sbjct: 460 DQFFEICDDGYPAFLSGISIQNGKSKF--KKSGAMAIHPYLAEEFKTYSALYSSKSVYLP 517
Query: 461 MLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKW 519
ML P W +G + ++ + +K + L P F+ LD L +T W
Sbjct: 518 MLSFPKAWISPSEGGYLNDLKPLVSSEEQSTALLYLKEADRSGSLLPAFKCLDILSSTPW 577
Query: 520 RVNNRVLSVLDRIWSCGGRLADLVDRND--VPL------PEKPETEDEAQLRKWQWKVRN 571
+N VL+V++++ + + + D +P+ PEK E + +K +
Sbjct: 578 AINQAVLNVINQVANIKEGFLKIPPKVDHLIPMVAAKEFPEKQNYSCEKDYLRAVYKYKQ 637
Query: 572 VKKEN-RERHSQRC---DIELKLSVARKM-KDEEGFYYPHNVDFRGRAYPMHPYLNHLGS 626
KK+N ++ H+ +C + E+ L +A K+ + + PHN+DFRGR YPM +L+H S
Sbjct: 638 DKKQNLQDYHASKCQRMEFEIFLRLANAFGKNGDIMFIPHNMDFRGRVYPMVSFLSHYQS 697
Query: 627 DLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADK 686
D+ R +L F E + LG+SG WLK HLA L+ G DK + E R+ F + + + DS K
Sbjct: 698 DIVRSLLMFWEPKPLGESGFRWLKYHLAGLF--GKDKWTLEERVRFIDESISLVVDSGKK 755
Query: 687 PLEGRRWWLKAEDPFQCLAVCINLTEAL----RSSSPETFISHIPVHQDGSCNGLQHYAA 742
PL+G WW KA+ P+Q L++C+ +T L + + E ++ IP+H DGSCNGLQHYAA
Sbjct: 756 PLDGLMWWKKADKPWQALSLCMEITNVLSYIEKGHNIEDYLCRIPIHLDGSCNGLQHYAA 815
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDR 802
LG D A +VN++ E ++ + +VL ++ + V L A+LL + R
Sbjct: 816 LGADKEAAESVNVIPSEHQGSKFNDVYTQVLNLVVEEINH--RVQKGELYAQLLSKILSR 873
Query: 803 KLVKQTVMTSVYGVTYIGARDQIKRRLKE------------RGAPMEEAEL-------FG 843
KL+KQTVMTSVYGVT GA +QI R KE R P+ + E +
Sbjct: 874 KLIKQTVMTSVYGVTRHGAMEQINERFKETIKDFQVMIKEGRPIPLTDQEFNNLRTNGYS 933
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGE-CAKIIASEN--------------------- 881
+ Y A + + ++ ++F A+ I WL E C ++I S +
Sbjct: 934 MANYLADIVIQSISKLFSGAKKIQDWLMENCYRLITSYDLRLVEELRNQKGHDKFNFFDA 993
Query: 882 ---QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE--KVMVKRQRTAFPPNFV 936
+P+ WT+P G PVVQ YR ++T LQ ++L+ + K+ +++Q PNFV
Sbjct: 994 TFYKPMMWTSPTGFPVVQLYRDKAVKRIETPLQNISLKVSAKYNKINLRKQLNGIAPNFV 1053
Query: 937 HSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFE 993
HS+D +HM++T + + GL+F+ VHDS+WTH CDVD ++ I+R++FV+LY + E
Sbjct: 1054 HSIDATHMLLTCIESNRRGLSFSSVHDSFWTHPCDVDNLSYIIRDQFVKLYSTDLIE 1110
>gi|456738227|gb|EMF62904.1| DNA-directed RNA polymerase [Stenotrophomonas maltophilia EPM1]
Length = 811
Score = 349 bits (896), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 229/646 (35%), Positives = 336/646 (52%), Gaps = 50/646 (7%)
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVK 467
++F T + V+ +G K++ +I N VL L + + MPM+VPP
Sbjct: 188 ELFVEATGLVELVTVAERG--KRHLLIAGNQKVLDWLTKAHDSAALYQPVLMPMVVPPRP 245
Query: 468 WTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLE-----PVFEALDTLGNTKWRVN 522
WT G Y+ G T R K++L V++AL+ + T W+VN
Sbjct: 246 WTTPRDGG------YLTDIGGRADLVRTRNRAYKRELALVDMPNVYQALNAIQATAWKVN 299
Query: 523 NRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP---ETEDEA-------QLRKWQWKVRNV 572
VL V+ +W+ GG +A L +R + LP +P ET+ + + ++W+ V
Sbjct: 300 VPVLEVMRELWNAGGGVAGLPERELMDLPSRPALLETDPDYFKEHHADEFKEWKRDRAKV 359
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+ N S R K+++A K + Y+PHN+DFRGR YP+ P L G D +G+
Sbjct: 360 YEANARSVSTRLAAAQKIALAEKFAEYPAIYFPHNLDFRGRCYPLPPTLTPQGDDAAKGL 419
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L FA+G LG+ G +WL IH+AN + GVDK+S E R+A+ H + I DSA PL+G+R
Sbjct: 420 LTFAQGVPLGEDGAYWLAIHVANCF--GVDKVSFEERVAWVREHEEQILDSALDPLDGQR 477
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
+W+ A+ PF LA C S + +SH+P+ DGSCNGLQ+++A+ RD++G AA
Sbjct: 478 FWMDADSPFCALAACFEWLG--YSLNGRDHVSHLPIALDGSCNGLQNFSAMLRDSVGGAA 535
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
NL+ + KPAD+YS + + ++ R A D L K L Q+ R +VKQ VMT
Sbjct: 536 TNLIPQPKPADIYSRVKD-----VAQEKLRARAESGDPLAIK-LDGQLTRDIVKQPVMTL 589
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE 872
YGVT G R Q+ + K+ G ME+ + + Y A + +GE+ AAR M WL +
Sbjct: 590 PYGVTKSGMRAQVLSKFKKLG--MEDD--WETAEYLATLLWECIGEVVIAARAAMDWLRD 645
Query: 873 CAKIIASENQPVRWTTPLGLPVVQPYR-----KLGRHTVKTSLQILTLQRETEKVMVKRQ 927
+K+ +S + PV WTTP G PV+Q YR ++ H + L + K+ +RQ
Sbjct: 646 ASKVASSADLPVSWTTPAGFPVLQEYREEEGVRIRPHVGGREVN-LVVNIGGTKLDRRRQ 704
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVEL 986
PNFVHS D SHMM+T + G+ +FA +HDSY THA + LR+ FV+
Sbjct: 705 TLGISPNFVHSCDASHMMLTTCLAAENGIESFAMIHDSYGTHAGQAAILAAALRQAFVDQ 764
Query: 987 YEMPIFENLLDSFQKSFPKLV---FPPLPERGDFDLREVLGSPYFF 1029
Y + + + P PPLP GD DL VL S YFF
Sbjct: 765 YSGDVLADFRQQLVEQLPPEAAEKLPPLPPHGDLDLSLVLESRYFF 810
>gi|261334540|emb|CBH17534.1| mitochondrial DNA-directed RNA polymerase,putative [Trypanosoma
brucei gambiense DAL972]
Length = 1317
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 218/598 (36%), Positives = 314/598 (52%), Gaps = 51/598 (8%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
DK + LPS ++ G+ Q + + P + +ALD + WR++ +L V +
Sbjct: 732 DKSVYNVLPSVAVK--GSTNQAMIISQAP------MMKALDAISRVPWRISKYMLHVQEA 783
Query: 532 IWSCGGRLADL-----------VDRNDVPLP--------EKPETEDEAQLRKWQWKVRNV 572
I G + R D+ +K E + Q R+++ +
Sbjct: 784 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 843
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
K E S R L AR + Y+P+++DFRGR YP+ LNH GSD R +
Sbjct: 844 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 903
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
LE+AE + LGK GL+WLK+HLAN G+ KLS + R+ + H+DD+ SA++PL G +
Sbjct: 904 LEYAEPKPLGKEGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 961
Query: 693 WWLKAEDPFQCLAVCINLTEALRSS-SPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
WW +A +P QCL C L +AL+ S PE F+S IPV DGS NGLQHY+A+GRD GA
Sbjct: 962 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 1021
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ--VDRKLVKQTV 809
VNLV E+PAD Y+GI ++ I+ DA+RD V L + + RK +K+ +
Sbjct: 1022 LVNLVPSERPADAYTGILKEMMSSIKADAERDHPVAQRCLGTGKGQDRDHIKRKTIKRPI 1081
Query: 810 MTSVYGVTYIGARDQIKRRLKERG---APMEEAELFGASCYAAKVTLTALGEMFQAARGI 866
MT VYGVT G +QI L ++ ++ + Y + L +LG F+ +
Sbjct: 1082 MTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREMADYLREKVLESLGITFRETQNC 1141
Query: 867 MSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE 920
W+ + II E QP WTTPLGL V QPY+ + T +
Sbjct: 1142 RRWITDVTNIIW-EVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHGCARVPANAF 1200
Query: 921 KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILR 980
++Q TA PN +HSLD SH+ MTA+ + GL+ VHDSYWT+ACD+ ++R+LR
Sbjct: 1201 SAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGLSMMAVHDSYWTYACDLPTLSRVLR 1260
Query: 981 EKFVELYEM--PIFENLLDSFQKS-FPKL-----VFPPLPERGDFDLREVLGSPYFFN 1030
E+FV LY P++E L + ++++ F L V P P+RGD DL VL SPYFF+
Sbjct: 1261 EQFVTLYGKYDPLWE-LKEQWEEAYFMDLRRHGKVLPDPPKRGDLDLNVVLNSPYFFS 1317
>gi|71755477|ref|XP_828653.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma brucei
TREU927]
gi|70834039|gb|EAN79541.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1274
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 218/598 (36%), Positives = 314/598 (52%), Gaps = 51/598 (8%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
DK + LPS ++ G+ Q + + P + +ALD + WR++ +L V +
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQAP------MMKALDAISRVPWRISKYMLHVQEA 740
Query: 532 IWSCGGRLADL-----------VDRNDVPLP--------EKPETEDEAQLRKWQWKVRNV 572
I G + R D+ +K E + Q R+++ +
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 800
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
K E S R L AR + Y+P+++DFRGR YP+ LNH GSD R +
Sbjct: 801 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 860
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
LE+AE + LGK GL+WLK+HLAN G+ KLS + R+ + H+DD+ SA++PL G +
Sbjct: 861 LEYAEPKPLGKEGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 918
Query: 693 WWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
WW +A +P QCL C L +AL+ S PE F+S IPV DGS NGLQHY+A+GRD GA
Sbjct: 919 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 978
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ--VDRKLVKQTV 809
VNLV E+PAD Y+GI ++ I+ DA+RD V L + + RK +K+ +
Sbjct: 979 LVNLVPSERPADAYTGILKEMMSSIKADAERDHPVAQRCLGTGKGQDRDHIKRKTIKRPI 1038
Query: 810 MTSVYGVTYIGARDQIKRRLKERG---APMEEAELFGASCYAAKVTLTALGEMFQAARGI 866
MT VYGVT G +QI L ++ ++ + Y + L +LG F+ +
Sbjct: 1039 MTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREMADYLREKVLESLGITFRETQNC 1098
Query: 867 MSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE 920
W+ + II E QP WTTPLGL V QPY+ + T +
Sbjct: 1099 RRWITDVTNIIW-EVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHGCARVPANAF 1157
Query: 921 KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILR 980
++Q TA PN +HSLD SH+ MTA+ + GL+ VHDSYWT+ACD+ ++R+LR
Sbjct: 1158 SAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGLSMMAVHDSYWTYACDLPTLSRVLR 1217
Query: 981 EKFVELYEM--PIFENLLDSFQKS-FPKL-----VFPPLPERGDFDLREVLGSPYFFN 1030
E+FV LY P++E L + ++++ F L V P P+RGD DL VL SPYFF+
Sbjct: 1218 EQFVTLYGKYDPLWE-LKEQWEEAYFMDLRRHGKVLPDPPKRGDLDLNVVLNSPYFFS 1274
>gi|15843563|gb|AAK97228.2|AF303582_1 RNA polymerase [Trypanosoma brucei]
Length = 1274
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 217/598 (36%), Positives = 314/598 (52%), Gaps = 51/598 (8%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
DK + LPS ++ G+ Q + + P + +ALD + WR++ +L V +
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQAP------MMKALDAISRVPWRISKYMLHVQEA 740
Query: 532 IWSCGGRLADL-----------VDRNDVPLP--------EKPETEDEAQLRKWQWKVRNV 572
I G + R D+ +K E + Q R+++ +
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 800
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
K E S R L AR + Y+P+++DFRGR YP+ LNH GSD R +
Sbjct: 801 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 860
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
LE+AE + LGK GL+WLK+HLAN G+ KLS + R+ + H+DD+ SA++PL G +
Sbjct: 861 LEYAEPKPLGKEGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 918
Query: 693 WWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
WW +A +P QCL C L +AL+ S PE F+S IPV DGS NGLQHY+A+GRD GA
Sbjct: 919 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 978
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ--VDRKLVKQTV 809
VNLV E+PAD Y+GI ++ I+ DA+RD L + + RK +K+ +
Sbjct: 979 LVNLVPSERPADAYTGILKEMMSSIKADAERDHQWLQRCLGTGKGQDRDHIKRKTIKRPI 1038
Query: 810 MTSVYGVTYIGARDQIKRRLKERG---APMEEAELFGASCYAAKVTLTALGEMFQAARGI 866
MT VYGVT G +QI L ++ ++ + Y + L +LG F+ +
Sbjct: 1039 MTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREMADYLREKVLESLGITFRETQNC 1098
Query: 867 MSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE 920
W+ + + II E QP WTTPLGL V QPY+ + T +
Sbjct: 1099 RRWITDVSNIIW-EVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHGCARVPANAF 1157
Query: 921 KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILR 980
++Q TA PN +HSLD SH+ MTA+ + GL+ VHDSYWT+ACD+ ++R+LR
Sbjct: 1158 SAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGLSMMAVHDSYWTYACDLPTLSRVLR 1217
Query: 981 EKFVELYEM--PIFENLLDSFQKS-FPKL-----VFPPLPERGDFDLREVLGSPYFFN 1030
E+FV LY P++E L + ++++ F L V P P+RGD DL VL SPYFF+
Sbjct: 1218 EQFVTLYGKYDPLWE-LKEQWEEAYFMDLRRHGKVLPDPPKRGDLDLNVVLNSPYFFS 1274
>gi|342185708|emb|CCC95193.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343472868|emb|CCD15094.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1278
Score = 343 bits (880), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 219/602 (36%), Positives = 313/602 (51%), Gaps = 55/602 (9%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
DK + LPS ++ G+ Q + + P + +ALD + WR++ +L V +
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQAP------MMKALDAISRVPWRISKYMLHVQEA 740
Query: 532 IWSCGGRLADL-----------VDRNDV--PLP----------EKPETEDEAQLRKWQWK 568
I G + R D+ LP ++ E + Q R++ +
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDICHTLPGSENVSDADDDRAEVYNLQQRREYDLQ 800
Query: 569 VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDL 628
K E S R L AR + Y+P+++DFRGR YP+ LNH GSD
Sbjct: 801 QDEDWKSLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDP 860
Query: 629 CRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
R +LE+AE + LGK GL+WLK+HLAN G+ KLS + R+ + H++D+ SA++PL
Sbjct: 861 FRALLEYAEPKPLGKEGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIEDVVRSAEQPL 918
Query: 689 EGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDT 747
G +WW +A +P QCL C L +AL+ S PE F+S IPV DGS NGLQHY+A+GRD
Sbjct: 919 YGDKWWQEAAEPMQCLMACKELADALKYSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDA 978
Query: 748 LGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ--VDRKLV 805
GA VNLV E+PAD Y+GI ++ I DA RD V L + + RK +
Sbjct: 979 FGATLVNLVPSERPADAYTGILKEMMSSITADANRDHPVAQRCLGTGKGQDRDHIKRKTI 1038
Query: 806 KQTVMTSVYGVTYIGARDQIKRRLKERG---APMEEAELFGASCYAAKVTLTALGEMFQA 862
K+ +MT VYGVT G +QI L ++ ++ + Y + L +LG F+
Sbjct: 1039 KRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREMADYLREKVLESLGITFRE 1098
Query: 863 ARGIMSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ 916
+ W+ + II E QP WTTPLGL V QPY+ + T +
Sbjct: 1099 TQNCRRWITDVTNIIW-EVQPAELRTALCWTTPLGLVVRQPYKMNKEMLIFTVHGCARVP 1157
Query: 917 RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMN 976
++Q TA PN +HSLD SH+ MTA+ + GL+ VHDSYWTHACD+ ++
Sbjct: 1158 GNAFSAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGLSMMAVHDSYWTHACDLPTLS 1217
Query: 977 RILREKFVELYEM--PIFENLLDSFQKS-FPKL-----VFPPLPERGDFDLREVLGSPYF 1028
R+LRE+FV LY P++E L + ++++ F L V P P+RGD DL VL SPYF
Sbjct: 1218 RVLREQFVTLYGKYDPLWE-LKEQWEEAYFMDLRRHGKVLPDPPKRGDLDLNVVLKSPYF 1276
Query: 1029 FN 1030
F+
Sbjct: 1277 FS 1278
>gi|146421878|ref|XP_001486882.1| hypothetical protein PGUG_00259 [Meyerozyma guilliermondii ATCC 6260]
Length = 1144
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 218/599 (36%), Positives = 310/599 (51%), Gaps = 63/599 (10%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMR---THGAKQQRDTVKRTPKKQLEPVFEALDTLG 515
+PMLVP WT D+G + ++ T + Q RT QL+ F+ LD LG
Sbjct: 434 LPMLVPARNWTSPDEGGYLGDLQPILHSDFTEKSLQYLRLANRT--SQLQSTFKGLDYLG 491
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLV---DRNDVPLPEKPETEDEAQLRKWQWKVRNV 572
+ W VN +L V + ++V +V +P P +D ++ ++NV
Sbjct: 492 SQAWAVNLSMLEVFSSAMQRSDGMLNIVPPVSSMEVNIPPNPSRKDFGSETEYYIALKNV 551
Query: 573 KKENRERHSQ-------RCDIELKLSVARKM-KDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
KKE +R + R ++E L AR + + Y PH +DFR RAYPM L+H
Sbjct: 552 KKEREKRLQEFHNLKGLRVELETLLKAARAFGANGDMVYLPHQLDFRSRAYPMVSVLSHY 611
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
SDL R +L F + LG G WL+ LA Y G+DKLS +GRL F ++++ I A
Sbjct: 612 QSDLVRSLLTFWHSKPLGPDGDKWLRYQLAAHY--GMDKLSLDGRLKFVADNMETILKCA 669
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEALR----SSSPETFISHIPVHQDGSCNGLQHY 740
P G WW KAE P+Q LA+C + + S + +P+ DGSCNGLQHY
Sbjct: 670 QNPF-GEVWWQKAEKPWQTLAMCFEFAKLQKYIAEGKSVHDYPCRLPISLDGSCNGLQHY 728
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR--AKLLLS 798
AALG D LGA +VN++ EK V + + VL I+ + + A P+ AK LLS
Sbjct: 729 AALGADKLGAQSVNVMPSEKDNGVRQDVYSAVLEIVTQKVLKSEADEPNITSSLAKHLLS 788
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRR------LKERGAPMEEAEL----FGASCYA 848
RKL+KQTVMTSVYGVT GA QI+ R L ++ P E+ + Y
Sbjct: 789 ---RKLIKQTVMTSVYGVTAFGAAAQIRNRISDVIDLADKLEPKIREEVKTHQNKIALYL 845
Query: 849 AKVTLTALGEMFQAARGIMSWLG-ECAKIIAS-----------EN-----------QPVR 885
+K+ L ++ E+F AR + WL C +II+S EN +P+
Sbjct: 846 SKMVLDSISELFSGARRLQDWLLLNCYRIISSWDEATLVSLESENIEVDFFLNKFYRPMM 905
Query: 886 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEK--VMVKRQRTAFPPNFVHSLDGSH 943
WT+ G PVVQ Y K R ++TSLQ +LQ+ T+ V ++RQ PNF+HSLD H
Sbjct: 906 WTSVSGFPVVQIYLKPQRQILETSLQRFSLQKWTKPSPVDIQRQLNGVAPNFIHSLDSVH 965
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKS 1002
M MT +A + + F VHDS+WTH+ D++ ++ I+RE+F LY PI E+LL+ Q +
Sbjct: 966 MFMTCLAAKAEDIAFVAVHDSFWTHSRDIERLSTIIREEFARLYSAPIVESLLEDMQNT 1024
>gi|190344480|gb|EDK36161.2| hypothetical protein PGUG_00259 [Meyerozyma guilliermondii ATCC 6260]
Length = 1144
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 216/599 (36%), Positives = 309/599 (51%), Gaps = 63/599 (10%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMR---THGAKQQRDTVKRTPKKQLEPVFEALDTLG 515
+PMLVP WT D+G + ++ T + Q RT QL+ F+ LD LG
Sbjct: 434 LPMLVPARNWTSPDEGGYLGDLQPILHSDFTEKSLQYLRLANRT--SQLQSTFKGLDYLG 491
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLV---DRNDVPLPEKPETEDEAQLRKWQWKVRNV 572
+ W VN +L V + ++V +V +P P +D ++ ++NV
Sbjct: 492 SQAWAVNLSMLEVFSSAMQRSDGMLNIVPPVSSMEVNIPPNPSRKDFGSETEYYIALKNV 551
Query: 573 KKENRERHSQ-------RCDIELKLSVARKM-KDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
KKE +R + R ++E L AR + + Y PH +DFR RAYPM L+H
Sbjct: 552 KKEREKRLQEFHNLKGLRVELETLLKAARAFGANGDMVYLPHQLDFRSRAYPMVSVLSHY 611
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
SDL R +L F + LG G WL+ LA Y G+DKLS +GRL F ++++ I A
Sbjct: 612 QSDLVRSLLTFWHSKPLGPDGDKWLRYQLAAHY--GMDKLSLDGRLKFVADNMETILKCA 669
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEALR----SSSPETFISHIPVHQDGSCNGLQHY 740
P G WW KAE P+Q LA+C + + S + +P+ DGSCNGLQHY
Sbjct: 670 QNPF-GEVWWQKAEKPWQTLAMCFEFAKLQKYIAEGKSVHDYPCRLPISLDGSCNGLQHY 728
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR--AKLLLS 798
AALG D LGA +VN++ EK V + + VL I+ + + A P+ AK LLS
Sbjct: 729 AALGADKLGAQSVNVMPSEKDNGVRQDVYSAVLEIVTQKVLKSEADEPNITSSLAKHLLS 788
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE----------LFGASCYA 848
RKL+KQTVMTSVYGVT GA QI+ R+ + ++ E + Y
Sbjct: 789 ---RKLIKQTVMTSVYGVTAFGAAAQIRNRISDVIDSADKLEPKIREEVKTHQNKIALYL 845
Query: 849 AKVTLTALGEMFQAARGIMSWLG-ECAKIIAS-----------EN-----------QPVR 885
+K+ L ++ E+F AR + WL C +II+S EN +P+
Sbjct: 846 SKMVLDSISELFSGARRLQDWLLLNCYRIISSWDEATLVSLESENIEVDFFLNKFYRPMM 905
Query: 886 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEK--VMVKRQRTAFPPNFVHSLDGSH 943
WT+ G PVVQ Y K R ++TSLQ +LQ+ T+ V ++RQ PNF+HSLD H
Sbjct: 906 WTSVSGFPVVQIYLKPQRQILETSLQRFSLQKWTKPSPVDIQRQLNGVAPNFIHSLDSVH 965
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKS 1002
M MT +A + + F VHDS+WTH+ D++ ++ I+RE+F LY PI E+LL+ Q +
Sbjct: 966 MFMTCLAAKAEDIAFVAVHDSFWTHSRDIERLSTIIREEFARLYSAPIVESLLEDMQNT 1024
>gi|340058755|emb|CCC53117.1| mitochondrial DNA-directed RNA polymerase,putative, (fragment),
partial [Trypanosoma vivax Y486]
Length = 517
Score = 335 bits (860), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 194/484 (40%), Positives = 269/484 (55%), Gaps = 30/484 (6%)
Query: 567 WKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGS 626
WK + + NR + Q L AR + Y+P+++DFRGR YP+ LNH GS
Sbjct: 44 WKSLSELRSNRIHYLQ------ALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGS 97
Query: 627 DLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADK 686
D R +LE+AE + LGK GL+WLK+HLAN G+ KLS + R+ + H+DD+ SA+
Sbjct: 98 DPFRALLEYAEPKPLGKEGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIDDVVRSAEL 155
Query: 687 PLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGR 745
PL G +WW +A +P QCL C L +AL+ S PE F+S IPV DGS NGLQHY+A+GR
Sbjct: 156 PLYGDKWWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGR 215
Query: 746 DTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAK--LLLSQVDRK 803
D GA VNLV E+PAD Y+GI ++ I DA RD V L + RK
Sbjct: 216 DAFGAQLVNLVPSERPADAYTGILKEMMRSITADAARDHPVAQRCLGTGKGQDCDHIKRK 275
Query: 804 LVKQTVMTSVYGVTYIGARDQIKRRLKERG---APMEEAELFGASCYAAKVTLTALGEMF 860
+K+ +MT VYGVT G +QI L ++ ++ + Y + L +LG F
Sbjct: 276 TIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREMADYLREKVLESLGITF 335
Query: 861 QAARGIMSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRKLGRHTVKTSLQILT 914
+ + W+ + II E QP WTTPLGL V QPY+ + T
Sbjct: 336 RETQNCRRWITDVTNIIW-EVQPAELRTALCWTTPLGLVVRQPYKVRKEMMIFTVHGCSR 394
Query: 915 LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
+ ++Q TA PN +HSLD SH+ MTA+ + GL+ VHDSYWTHACD+
Sbjct: 395 VPGNAYSAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGLSMMAVHDSYWTHACDLPT 454
Query: 975 MNRILREKFVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLREVLGSP 1026
++R+LR++FV LY P++E L + +++++ V P P+RGD DL VL SP
Sbjct: 455 LSRVLRQQFVTLYSNYDPLWE-LKEQWEEAYFMDLRRHGRVLPDPPQRGDLDLNVVLDSP 513
Query: 1027 YFFN 1030
YFF+
Sbjct: 514 YFFS 517
>gi|154338315|ref|XP_001565382.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134062431|emb|CAM42292.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1299
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 213/608 (35%), Positives = 315/608 (51%), Gaps = 60/608 (9%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
+K + LPS ++ GA Q V + P + +ALD + WR+N +L V +
Sbjct: 703 EKSVYGVLPSVAVK--GAANQAMIVSQAP------MMKALDAISRVPWRINKYMLHVQEA 754
Query: 532 IWSCGGRLADL-----------VDRNDVPLPEK-----------PETEDEA--------Q 561
I G + + D+ P + +D A Q
Sbjct: 755 IVREGFGFGKIRPGFYPLHYYSMSDGDIKYPSDRRRSALLNSNDNDGDDLAAGDVFNLQQ 814
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
R+ + R KE E S R L L AR + Y+P+++DFRGR YP+ L
Sbjct: 815 RRQCTLQQRQDWKELCELRSSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRL 874
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
NH GSD RG+LE+AE + LG+ GL+WLK+HLAN G+ KLS + R+ + + H++D+
Sbjct: 875 NHTGSDPFRGLLEYAEPKPLGEVGLYWLKVHLAN--KMGMSKLSFDERVHYVDEHMEDVV 932
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHY 740
SA+ PL G RWW +A +P QCL C + +A + S E F+S +PV DGS NGLQHY
Sbjct: 933 QSAENPLSGDRWWQEASEPIQCLMACKEVADAAKCSQGAEKFLSRLPVAVDGSYNGLQHY 992
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ- 799
+A+GRD GA VNLV E+PAD Y+GI +L I DA RD V L +
Sbjct: 993 SAIGRDAFGAKLVNLVPSERPADAYTGILKEMLKSICIDADRDHQVAQRCLGTGRGQDKD 1052
Query: 800 -VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM---EEAELFGASCYAAKVTLTA 855
+ RK +K+ +MT VYGVT G +QI L ++ ++ + Y L +
Sbjct: 1053 HIKRKTIKRPIMTQVYGVTSYGMSEQILDELVKQNKSHGLWTHTDMKEMAAYLRDKVLES 1112
Query: 856 LGEMFQAARGIMSWLGECAKII-----ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
LG F+ + W+ E A ++ A + WTTPLGL V QPY+ ++ T
Sbjct: 1113 LGVTFRETQNCRRWISEVAALLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPH 1172
Query: 911 QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHAC 970
+ ++ ++Q TA PN +HSLD +H+ MTA+ + GL+ VHDSYWT+AC
Sbjct: 1173 GYSRVPGDSVAPASRKQLTAIAPNLIHSLDATHLAMTALEMQHQGLSMMAVHDSYWTYAC 1232
Query: 971 DVDEMNRILREKFVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLREV 1022
D+ +++++LRE+FV LY P++E L + +++++ + P P+RGD DL V
Sbjct: 1233 DMPKLSQVLREQFVNLYSKYDPLWE-LKEQWEETYFMDLRRHGVKLPDPPKRGDLDLNVV 1291
Query: 1023 LGSPYFFN 1030
L SPYFF+
Sbjct: 1292 LNSPYFFS 1299
>gi|449669690|ref|XP_002168863.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Hydra
magnipapillata]
Length = 404
Score = 332 bits (852), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 225/357 (63%), Gaps = 23/357 (6%)
Query: 689 EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
+G++WW + DP+Q L CI +T ALRS P +++++ PVH DGSCNGLQHYA+LG+D+
Sbjct: 56 KGKQWWREGTDPWQTLVACIEITNALRSPDPSSYVTYAPVHMDGSCNGLQHYASLGQDSY 115
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808
GA VNL +KP DVYS +A V QRDA + D L AK L ++ RK+VKQT
Sbjct: 116 GARQVNLTPADKPQDVYSEVALLVEKARQRDASKG-----DTL-AKELDGKITRKVVKQT 169
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
VMT VYGVT++G R QI+++LKE G + +F AS Y K +L EMF +AR I
Sbjct: 170 VMTVVYGVTFVGGRLQIEKQLKEMG--VSNDIIFKASVYIVKEVFKSLQEMFTSARQIQD 227
Query: 869 WLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE---TEKVMVK 925
WL A IA V W TP+GLPVVQPY K +T +Q + + T+ +
Sbjct: 228 WLTNSASQIALAGHCVDWVTPMGLPVVQPYHKETTERFRTKIQTVCSSHKFDYTQIPHLT 287
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
+Q+ FPPNFVHSLD +HMMMT++ C + +TFA VHDS+WTHACD+D++N R++FV
Sbjct: 288 KQKGGFPPNFVHSLDSTHMMMTSLRCEQEKMTFASVHDSFWTHACDIDKLNEFCRQEFVH 347
Query: 986 LYEMPIFENLLDSFQKSFPKL------------VFPPLPERGDFDLREVLGSPYFFN 1030
L+E+PI E+L + F + F L F PLP+ G FD+R+VL S YFF+
Sbjct: 348 LHELPILEDLKNHFDRKFSGLPLRKAVHGSSVASFNPLPKPGTFDVRQVLNSTYFFS 404
>gi|150865890|ref|XP_001385284.2| mitohcondrial RNA polymerase [Scheffersomyces stipitis CBS 6054]
gi|149387146|gb|ABN67255.2| mitohcondrial RNA polymerase [Scheffersomyces stipitis CBS 6054]
Length = 1202
Score = 332 bits (851), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 207/609 (33%), Positives = 302/609 (49%), Gaps = 85/609 (13%)
Query: 458 YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGN 516
Y PML PP W G + ++ + K + R QL +EAL+ LG+
Sbjct: 478 YFPMLYPPKPWVSPTNGGYLLDLKPIITSSDIKTSMKYIDRANSSGQLNSTYEALNYLGS 537
Query: 517 TKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKEN 576
W +N+ VL V + + + V E+ E ++ + ++ + + +V +
Sbjct: 538 NAWAINSEVLQVFNEVMKLDEGFLKIPPTLKVLKTEEQEDYNDLKTKRILFNLVHVVANS 597
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
+ + + + PHNVDFRGRAYPM L H D RGI+ F
Sbjct: 598 YDVNG------------------DMLFLPHNVDFRGRAYPMASLLTHYQEDAVRGIMMFW 639
Query: 637 EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLK 696
+ LG +GL+WLK LA ++ G DKLS E R+ F + +L+ I +SA+ PL WW +
Sbjct: 640 HSQPLGSTGLNWLKYQLAGVF--GKDKLSFENRIQFVDENLESIRESAENPLSKNSWWKE 697
Query: 697 AEDPFQCLAVCINLTEAL----RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
A+ P+Q LA+CI L A + + E F S +PVHQDGSCNGLQHYAALG DT G A
Sbjct: 698 ADKPWQTLALCIELNRAYNYVEQGNKIEEFRSRMPVHQDGSCNGLQHYAALGADTAGGEA 757
Query: 753 VNLVAREKP----ADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQV-----DRK 803
VN+V ++ DVYS + V+ +Q+D + D+ + LS + +RK
Sbjct: 758 VNIVPNKENLSQRGDVYSSVLQIVIEKVQKDLTGEGN--SDSSNSNFELSSIAMQILNRK 815
Query: 804 LVKQTVMTSVYGVTYIGARDQIKRRLKERGAPME---------EAELFGA--------SC 846
L+KQTVMT+VYGVT G QI R+K+ E + E S
Sbjct: 816 LIKQTVMTTVYGVTTYGGASQIYLRIKDLIQEHEIKLHNDEKIDLEFLEKLRRYRRPLSL 875
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGE-CAKIIASEN------------------------ 881
Y +K L ++ E+F AR I WL + C + I S +
Sbjct: 876 YLSKYVLNSISELFSGARIIQDWLVDNCFRAINSFDLETVDFIRHKSTTNNIPSFSSHTS 935
Query: 882 -QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHS 938
+P+ WT+ G P+VQ Y+ + TSLQ +++ + E + K+Q A PNF+HS
Sbjct: 936 FKPMMWTSLSGFPIVQLYKHSKSDVIPTSLQSISINKPQEIAPINKKKQMNAIAPNFIHS 995
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN---- 994
+D HM+MT VA +KA + F VHDS+WT+ VDE++ +LRE+FV L+ I EN
Sbjct: 996 IDSIHMLMTCVAAKKANIPFVSVHDSFWTYPNHVDELSVLLREEFVRLHSSNIAENLRED 1055
Query: 995 LLDSFQKSF 1003
LL + KSF
Sbjct: 1056 LLYTMSKSF 1064
>gi|401422884|ref|XP_003875929.1| mitochondrial DNA-directed RNA polymerase,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322492169|emb|CBZ27443.1| mitochondrial DNA-directed RNA polymerase,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1511
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 271/476 (56%), Gaps = 22/476 (4%)
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
KE E S R L L AR + Y+P+++DFRGR YP+ LNH GSD RG+L
Sbjct: 1039 KELSELRSSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLL 1098
Query: 634 EFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
E+AE + LG GL+WLK+HLAN G+ KLS + R+ + + H++D+ SA+ PL G RW
Sbjct: 1099 EYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRW 1156
Query: 694 WLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
W +A +P QCL C + +A++ S PE F+S +PV DGS NGLQHY+A+GRD GA
Sbjct: 1157 WQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSYNGLQHYSAIGRDAFGAKL 1216
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ--VDRKLVKQTVM 810
VNLV E+PAD Y+GI +L I DA RD V L + + RK +K+ +M
Sbjct: 1217 VNLVPSERPADAYTGILKEMLKSICIDADRDHQVAQRCLGTGRGQDKDHIKRKTIKRPIM 1276
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPM---EEAELFGASCYAAKVTLTALGEMFQAARGIM 867
T VYGVT G +QI L ++ ++ + Y L +LG F+ +
Sbjct: 1277 TQVYGVTGYGMSEQIFDELVKQNKSHGLWTHTDMKEMAAYLRDKVLESLGITFRETQNCR 1336
Query: 868 SWLGECAKII-----ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKV 922
W+ E ++ A + WTTPLGL V QPY+ ++ T + ++
Sbjct: 1337 KWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHGYSRIPGDSVAP 1396
Query: 923 MVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREK 982
++Q TA PN +HSLD +H+ MTA+ + GL+ VHDSYWT+ACD+ +++++LRE+
Sbjct: 1397 ASRKQLTAIAPNLIHSLDATHLAMTALEMQHQGLSMMAVHDSYWTYACDMPKLSQVLREQ 1456
Query: 983 FVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
FV LY P++E L + +++++ + P P+RGD DL VL SPYFF+
Sbjct: 1457 FVNLYSKYDPLWE-LKEQWEETYFMDLRRHGVKLPDPPKRGDLDLNVVLNSPYFFS 1511
>gi|157870161|ref|XP_001683631.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania major
strain Friedlin]
gi|68126697|emb|CAJ04832.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania major
strain Friedlin]
Length = 1509
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 210/609 (34%), Positives = 316/609 (51%), Gaps = 61/609 (10%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
+K + LPS ++ G+ Q V + P + +ALD + WR+N +L V +
Sbjct: 912 EKSVYGVLPSVAVK--GSANQAMIVSQAP------MLKALDAISRVPWRINKYMLHVQEA 963
Query: 532 I--------------------WSCGGRLADLVDRNDVPLPEKPETEDEA----------- 560
+ + G + DR L + +D++
Sbjct: 964 VVREGFGFGKIRPGFYPLHYYYMSDGEIRYPSDRRRSALLNGNDDDDDSDLAAGDVFNLL 1023
Query: 561 QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPY 620
Q R+ + + KE E S R L L AR + Y+P+++DFRGR YP+
Sbjct: 1024 QRRQCILQQKQDWKELSELRSSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGR 1083
Query: 621 LNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDI 680
LNH GSD RG+LE+AE + LG GL+WLK+HLAN G+ KLS + R+ + + H++D+
Sbjct: 1084 LNHTGSDPFRGLLEYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDV 1141
Query: 681 FDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQH 739
SA+ PL G RWW +A +P QCL C + +A++ S PE F+S +PV DGS NGLQH
Sbjct: 1142 VQSAESPLVGDRWWQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSYNGLQH 1201
Query: 740 YAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ 799
Y+A+GRD GA VNLV E+PAD Y+GI +L I DA RD V L +
Sbjct: 1202 YSAIGRDAFGAKLVNLVPSERPADAYTGILKEMLKSICIDADRDHQVAQRCLGTGRGQDK 1261
Query: 800 --VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM---EEAELFGASCYAAKVTLT 854
+ RK +K+ +MT VYGVT G +QI L ++ ++ + Y L
Sbjct: 1262 DHIKRKTIKRPIMTQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKEMAAYLRDKVLE 1321
Query: 855 ALGEMFQAARGIMSWLGECAKII-----ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS 909
+LG F+ + W+ E ++ A + WTTPLGL V QPY+ ++ T
Sbjct: 1322 SLGITFRETQNCRKWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTP 1381
Query: 910 LQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
+ ++ ++Q TA PN +HSLD +H+ MTA+ + GL+ VHDSYWT+A
Sbjct: 1382 HGYSRVPGDSVAPASRKQLTAIAPNLIHSLDATHLAMTALEMQHQGLSMMAVHDSYWTYA 1441
Query: 970 CDVDEMNRILREKFVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLRE 1021
CD+ +++++LRE+FV LY P++E L + +++++ + P P+RGD DL
Sbjct: 1442 CDMPKLSQVLREQFVNLYSKYDPLWE-LKEQWEETYFMDLRRHGVKLPDPPKRGDLDLNV 1500
Query: 1022 VLGSPYFFN 1030
VL SPYFF+
Sbjct: 1501 VLNSPYFFS 1509
>gi|398016041|ref|XP_003861209.1| mitochondrial DNA-directed RNA polymerase, putative [Leishmania
donovani]
gi|322499434|emb|CBZ34507.1| mitochondrial DNA-directed RNA polymerase, putative [Leishmania
donovani]
Length = 1510
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 271/476 (56%), Gaps = 22/476 (4%)
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
KE E S R L L AR + Y+P+++DFRGR YP+ LNH GSD RG+L
Sbjct: 1038 KELSELRSSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLL 1097
Query: 634 EFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
E+AE + LG GL+WLK+HLAN G+ KLS + R+ + + H++D+ SA+ PL G RW
Sbjct: 1098 EYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRW 1155
Query: 694 WLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
W +A +P QCL C + +A++ S PE F+S +PV DGS NGLQHY+A+GRD GA
Sbjct: 1156 WQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSYNGLQHYSAIGRDAFGAKL 1215
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ--VDRKLVKQTVM 810
VNLV E+PAD Y+GI +L I DA RD V L + + RK +K+ +M
Sbjct: 1216 VNLVPSERPADAYTGILKEMLKSICIDAGRDHQVAQRCLGTGRGQDKDHIKRKTIKRPIM 1275
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPM---EEAELFGASCYAAKVTLTALGEMFQAARGIM 867
T VYGVT G +QI L ++ ++ + Y L +LG F+ +
Sbjct: 1276 TQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKEMAAYLRDKVLESLGITFRETQNCR 1335
Query: 868 SWLGECAKII-----ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKV 922
W+ E ++ A + WTTPLGL V QPY+ ++ T + ++
Sbjct: 1336 KWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHGYSRVPGDSVAP 1395
Query: 923 MVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREK 982
++Q TA PN +HSLD +H+ MTA+ + GL+ VHDSYWT+ACD+ +++++LRE+
Sbjct: 1396 ASRKQLTAIAPNLIHSLDATHLAMTALEMQHQGLSMMAVHDSYWTYACDMPKLSQVLREQ 1455
Query: 983 FVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
FV LY P++E L + +++++ + P P+RGD DL VL SPYFF+
Sbjct: 1456 FVNLYSKYDPLWE-LKEQWEETYFMDLRRHGVKLPDPPKRGDLDLNVVLNSPYFFS 1510
>gi|71665631|ref|XP_819783.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70885100|gb|EAN97932.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1278
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 211/610 (34%), Positives = 313/610 (51%), Gaps = 66/610 (10%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
+K + LPS ++ G+ Q + + P + +ALD + WR++ +L V +
Sbjct: 684 EKSVYNVLPSVAVK--GSTNQAMIISQAP------MMKALDAISRVPWRISKYMLHVQEA 735
Query: 532 IWSCGGRLADL-----------VDRNDVPLPEKP-----------------ETEDEAQLR 563
I G + R D+ E + Q R
Sbjct: 736 IVREGYGFGKIRPAFYPLHYCAKSRGDISYDVAGNADAAAAADSYDDGDDCEVYNLQQRR 795
Query: 564 KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNH 623
++ + K E+ S R L AR + Y+P+++DFRGR YP+ LNH
Sbjct: 796 EYDTQQDEDWKSLSEQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNH 855
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
GSD R +LE+AE + LG++GL+WLK+HLAN G+ KLS + R+ + H++D+ S
Sbjct: 856 TGSDPFRALLEYAEPKPLGETGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIEDVVQS 913
Query: 684 ADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAA 742
A+ PL G +WW +A +P QCL C L +AL+ S E ++S IPV DGS NGLQHY+A
Sbjct: 914 AESPLHGDKWWQEAAEPMQCLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSA 973
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA--KLLLSQV 800
+GRD GA VNLV E+PAD Y+GI ++ I DA++D V L + V
Sbjct: 974 IGRDAFGAQLVNLVPSERPADAYTGILKEMMRSIMADAEKDNPVAQRCLGTGKGQDCNHV 1033
Query: 801 DRKLVKQTVMTSVYGVTYIGARDQIKRRL----KERG--APMEEAELFGASCYAAKVTLT 854
RK +K+ +MT VYGVT G +QI L K G P + E+ + Y + L
Sbjct: 1034 KRKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTPTDMREM---ADYLREKVLE 1090
Query: 855 ALGEMFQAARGIMSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRKLGRHTVKT 908
+LG F+ + W+ E +I E QP WTTPLGL V QPY+ T+ T
Sbjct: 1091 SLGITFRETQNCRRWITEVTNMIW-EAQPAELRTALCWTTPLGLVVRQPYKVRKEITLFT 1149
Query: 909 SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
+ + ++Q TA PN +HSLD +H+ MTA+ + GL+ VHDSYWT+
Sbjct: 1150 PHGCSRIPGDAFSAASRKQLTAIAPNLIHSLDATHLAMTAIEMQNLGLSMMAVHDSYWTY 1209
Query: 969 ACDVDEMNRILREKFVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLR 1020
ACD+ ++++LR++FV LY P++E L + +++++ + P P+RGD DL
Sbjct: 1210 ACDLPVLSKVLRQQFVTLYSKYDPLWE-LKEQWEEAYFMDLRRHGTLLPDPPKRGDLDLS 1268
Query: 1021 EVLGSPYFFN 1030
VL SPYFF+
Sbjct: 1269 VVLDSPYFFS 1278
>gi|146087926|ref|XP_001465944.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
infantum JPCM5]
gi|134070045|emb|CAM68377.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
infantum JPCM5]
Length = 1510
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 271/476 (56%), Gaps = 22/476 (4%)
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
KE E S R L L AR + Y+P+++DFRGR YP+ LNH GSD RG+L
Sbjct: 1038 KELSELRSSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLL 1097
Query: 634 EFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
E+AE + LG GL+WLK+HLAN G+ KLS + R+ + + H++D+ SA+ PL G RW
Sbjct: 1098 EYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRW 1155
Query: 694 WLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
W +A +P QCL C + +A++ S PE F+S +PV DGS NGLQHY+A+GRD GA
Sbjct: 1156 WQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSYNGLQHYSAIGRDAFGAKL 1215
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ--VDRKLVKQTVM 810
VNLV E+PAD Y+GI +L I DA RD V L + + RK +K+ +M
Sbjct: 1216 VNLVPSERPADAYTGILKEMLKSICIDAGRDHQVAQRCLGTGRGQDKDHIKRKTIKRPIM 1275
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPM---EEAELFGASCYAAKVTLTALGEMFQAARGIM 867
T VYGVT G +QI L ++ ++ + Y L +LG F+ +
Sbjct: 1276 TQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKEMAAYLRDKVLESLGITFRETQNCR 1335
Query: 868 SWLGECAKII-----ASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKV 922
W+ E ++ A + WTTPLGL V QPY+ ++ T + ++
Sbjct: 1336 KWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHGYSRVPGDSVAP 1395
Query: 923 MVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREK 982
++Q TA PN +HSLD +H+ MTA+ + GL+ VHDSYWT+ACD+ +++++LRE+
Sbjct: 1396 ASRKQLTAIAPNLIHSLDATHLAMTALEMQHQGLSMMAVHDSYWTYACDMPKLSQVLREQ 1455
Query: 983 FVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLREVLGSPYFFN 1030
FV LY P++E L + +++++ + P P+RGD DL VL SPYFF+
Sbjct: 1456 FVNLYSKYDPLWE-LKEQWEETYFMDLRRHGVKLPDPPKRGDLDLNVVLNSPYFFS 1510
>gi|407860406|gb|EKG07407.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1277
Score = 329 bits (844), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 207/606 (34%), Positives = 311/606 (51%), Gaps = 59/606 (9%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
+K + LPS ++ G+ Q + + P + +ALD + WR++ +L V +
Sbjct: 684 EKSVYNVLPSVAVK--GSTNQAMIISQAP------MMKALDAISRVPWRISKYMLHVQEA 735
Query: 532 IWSCGGRLADL-----------VDRNDVPLPEKP----------------ETEDEAQLRK 564
I G + R D+ E + Q R+
Sbjct: 736 IVREGYGFGKIRPAFYPLHYCAKSRGDISYDVADNADAAAADAYDDGDDCEVYNLQQRRE 795
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
+ + K E+ S R L AR + Y+P+++DFRGR YP+ LNH
Sbjct: 796 YDTQQDEDWKSLSEQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHT 855
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
GSD R +LE+AE + LG++GL+WLK+HLAN G+ KLS + R+ + H++D+ SA
Sbjct: 856 GSDPFRALLEYAEPKPLGETGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIEDVVQSA 913
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAAL 743
+ PL G +WW +A +P QCL C L +AL+ S E ++S IPV DGS NGLQHY+A+
Sbjct: 914 ESPLHGDKWWQEAAEPMQCLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSAI 973
Query: 744 GRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA--KLLLSQVD 801
GRD GA VNLV E+PAD Y+GI ++ I DA++D V L + V
Sbjct: 974 GRDAFGAQLVNLVPSERPADAYTGILKEMMRSIMADAEKDNPVAQRCLGTGKGQDCNHVK 1033
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERG---APMEEAELFGASCYAAKVTLTALGE 858
RK +K+ +MT VYGVT G +QI L ++ ++ + Y + L +LG
Sbjct: 1034 RKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREMADYLREKVLESLGI 1093
Query: 859 MFQAARGIMSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRKLGRHTVKTSLQI 912
F+ + W+ E +I E QP WTTPLGL V QPY+ T+ T
Sbjct: 1094 TFRETQNCRRWITEVTNMIW-EAQPAELRTALCWTTPLGLVVRQPYKVRKEITLFTPHGC 1152
Query: 913 LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
+ + ++Q TA PN +HSLD +H+ MTA+ + GL+ VHDSYWT+ACD+
Sbjct: 1153 SRIPGDAFSAASRKQLTAIAPNLIHSLDATHLAMTAIEMQNLGLSMMAVHDSYWTYACDL 1212
Query: 973 DEMNRILREKFVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLREVLG 1024
++++LR++FV LY P++E L + +++++ + P P+RGD DL VL
Sbjct: 1213 PVLSKVLRQQFVTLYSKYDPLWE-LKEQWEEAYFMDLRRHGTLLPDPPKRGDLDLSVVLD 1271
Query: 1025 SPYFFN 1030
SPYFF+
Sbjct: 1272 SPYFFS 1277
>gi|407425509|gb|EKF39474.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi marinkellei]
Length = 1328
Score = 328 bits (842), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 207/606 (34%), Positives = 311/606 (51%), Gaps = 59/606 (9%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
+K + LPS ++ G+ Q + + P + +ALD + WR++ +L V +
Sbjct: 735 EKSVYNVLPSVAVK--GSTNQAMIISQAP------MMKALDAISRVPWRISKYMLHVQEA 786
Query: 532 IWSCGGRLADL-----------VDRNDVPLPEKP----------------ETEDEAQLRK 564
I G + R D+ E + Q R+
Sbjct: 787 IVREGYGFGKIRPAFYPLHYCAKSRGDISYDAADNADDAAADAYDDGDDCEVYNLQQRRE 846
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
+ + K E+ S R L AR + Y+P+++DFRGR YP+ LNH
Sbjct: 847 YDTQQDEDWKSLSEQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHT 906
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
GSD R +LE+AE + LG++GL+WLK+HLAN G+ KLS + R+ + H++D+ SA
Sbjct: 907 GSDPFRALLEYAEPKPLGETGLYWLKVHLAN--KMGMSKLSFDERVHYVNEHIEDVVRSA 964
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHYAAL 743
+ PL G +WW +A +P QCL C L +AL+ S E ++S IPV DGS NGLQHY+A+
Sbjct: 965 ESPLHGDKWWQEAAEPMQCLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSAI 1024
Query: 744 GRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA--KLLLSQVD 801
GRD GA VNLV E+PAD Y+GI ++ I DA++D V L + V
Sbjct: 1025 GRDAFGAQLVNLVPSERPADAYTGILKEMMRSILADAEKDNPVAQRCLGTGKGQDCNHVK 1084
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERG---APMEEAELFGASCYAAKVTLTALGE 858
RK +K+ +MT VYGVT G +QI L ++ ++ + Y + L +LG
Sbjct: 1085 RKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREMAGYLREKVLESLGI 1144
Query: 859 MFQAARGIMSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRKLGRHTVKTSLQI 912
F+ + W+ E +I E QP WTTPLGL V QPY+ T+ T
Sbjct: 1145 TFRETQNCRRWITEVTNMIW-EAQPAELRTALCWTTPLGLVVRQPYKVRKEITLFTPHGC 1203
Query: 913 LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
+ + ++Q TA PN +HSLD +H+ MTA+ + GL+ VHDSYWT+ACD+
Sbjct: 1204 SRIPGDAFSAASRKQLTAIAPNLIHSLDATHLAMTAIEMQNLGLSMMAVHDSYWTYACDL 1263
Query: 973 DEMNRILREKFVELYEM--PIFENLLDSFQKSF------PKLVFPPLPERGDFDLREVLG 1024
++++LR++FV LY P++E L + +++++ + P P+RGD DL VL
Sbjct: 1264 PVLSKVLRQQFVTLYSKYDPLWE-LKEQWEEAYFMDLRRHGTLLPDPPKRGDLDLSVVLD 1322
Query: 1025 SPYFFN 1030
SPYFF+
Sbjct: 1323 SPYFFS 1328
>gi|345893809|ref|ZP_08844601.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp. 6_1_46AFAA]
gi|345045845|gb|EGW49744.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp. 6_1_46AFAA]
Length = 898
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 234/719 (32%), Positives = 351/719 (48%), Gaps = 77/719 (10%)
Query: 369 GQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETK 428
G F+PW + +G +++EL+ ++ I L P P R +S
Sbjct: 198 GTVAFRPWSRPDCLHLGQKMLELIMESTGIF----HLVRRP---LPG-----RRISSAAD 245
Query: 429 GGSKKYGVIECNPLVLKGLER---TARHMVIPYMPMLVPPVKWTGYDKGAHFFL----PS 481
Y +E +P L+R TA M Y+P +VPP W G G ++ L P
Sbjct: 246 SSGWVY-TLELSPSCRDWLQRHRETAGLMYPDYLPTIVPPKPWRGAGGGGYYSLDDTRPL 304
Query: 482 YVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC-GGRLA 540
+++ QRD +R +L+ V A++ + NT W +N VL V R+W GG +A
Sbjct: 305 SLVKLGDMDYQRDLDRRIQNGELKDVLMAVNAMQNTAWSINAPVLEVARRLWDVTGGDVA 364
Query: 541 DLVDRNDVPLPEKP----ETEDEA---------------QLRKWQWKVRNVKKENRERHS 581
L R+ LP P + D A +L W+ + ++N +S
Sbjct: 365 GLPKRDGWRLPLCPVCGADITDSATAYVKHDCLDTLAPEELADWKRAALRIHEKNVANNS 424
Query: 582 QRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL 641
+R + L++A + + E FYYP+ +DFRGR Y + YLN G+DL +G+L F+EG+ L
Sbjct: 425 RRLTVAKILTLAERFQREHHFYYPYQLDFRGRIYAVPTYLNPQGTDLAKGLLRFSEGKPL 484
Query: 642 GK-SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDP 700
G + WL IH +N + G DK+S + R ++ H + I A PL WW++A+ P
Sbjct: 485 GDMKAVRWLAIHGSNTW--GNDKVSLDERHSWVLEHQEHILAQAADPL-ADGWWMEADAP 541
Query: 701 FQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK 760
F LA C +R F+S +P+ DG+CNGLQ Y+ + RD +G AVNL EK
Sbjct: 542 FCFLAFCFEWAGYVREGL--GFLSRLPIALDGTCNGLQIYSLMLRDAVGGHAVNLTPTEK 599
Query: 761 PADVYSGIAARVLVIIQRDAQR-DPA---------VFPDALRAKLLLS-QVDRKLVKQTV 809
P D+Y +A +V +++ DA PA ++ AL A+ LL +DRK K+ V
Sbjct: 600 PQDIYGIVAEKVRAVLKHDADHGGPAQGRKKDEGPLYDSALCARFLLGLGIDRKTTKRQV 659
Query: 810 MTSVYGVTYIGARDQIKR----RLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARG 865
M YG T R K +L R P + L + Y + + A+G AR
Sbjct: 660 MVLPYGGTNESCRKYTKEWLTGKLDGRALP-DGLSLHHLNLYLSGLIWEAIGATVIKARE 718
Query: 866 IMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ----ILTLQRETEK 921
MS+L + A I+A P+RWT+P GLPV+Q Y + + VKT L LTL E +
Sbjct: 719 AMSFLQDTALILAKLKHPLRWTSPTGLPVLQRYMDMEKRRVKTQLGDNLIYLTLHEEKQD 778
Query: 922 VM-VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRIL 979
+ V +QR+A PNFVHSLD + +M T C + G+ +FA +HDSY THA D + + L
Sbjct: 779 SLNVAKQRSAVAPNFVHSLDAAALMFTVRDCLRRGIGSFAMIHDSYGTHAADTETLAATL 838
Query: 980 REKFVELYE---------MPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
RE FV L+ + +L Q++ + FPP+P G + +V S +FF
Sbjct: 839 REVFVRLFGGDNNMLTLWLREVSAVLTPRQRATLQTPFPPVPGMGSLRVEDVRNSLFFF 897
>gi|15888521|ref|NP_354202.1| DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
gi|15156227|gb|AAK86987.1| DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
Length = 863
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 225/741 (30%), Positives = 354/741 (47%), Gaps = 88/741 (11%)
Query: 345 EKLRKKVTDLIKK---QKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSP 401
E RKK+++ QK + +++ W QD +AKVG ++IE+ +
Sbjct: 154 EYARKKISEQTHNAVHQKRAMTKHAKHKGAEWQDWSQDVKAKVGLKLIEIAVEQT----- 208
Query: 402 ADQLADAPPDIFPAFTHALRTVSKETKGG--SKKYGVIECNPLVLKGLERTARHMVIP-Y 458
L + ++++G + Y V L E + + P Y
Sbjct: 209 -----------------GLFEIVRQSEGAHNTNIYVVATKETLDWLATENSRLAPLSPVY 251
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+P LVPP WT +G ++ +R R + + V+ +++ + NT
Sbjct: 252 LPTLVPPRPWTSPFRGGYWSGRVRNLRLIKTGN-RQYLMDLESVDMPKVYHSINAMQNTA 310
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP------------ETEDEAQLRKWQ 566
W +N+RV V+ +W LA + +D+PLPEKP E + +W+
Sbjct: 311 WSINHRVYEVMASLWDNQSTLACIPQADDMPLPEKPMWLAPEMKREDMSPEQLEEFSRWK 370
Query: 567 WKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGS 626
+ + + N S+R L VA + KDEE FY+PH +DFRGR Y + +LN G
Sbjct: 371 SERTTIYEANARAVSKRLAFSRMLGVATRFKDEEEFYFPHQMDFRGRVYAVPLFLNPQGD 430
Query: 627 DLCRGILEFAEGRTL-GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSAD 685
D G+L+FA + + G WL IH A L+ GVDK S R+ + + +I SA+
Sbjct: 431 DASHGLLQFANSVPITNEEGADWLAIHGAGLW--GVDKCSMNERVEWVMANQREILASAE 488
Query: 686 KPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGR 745
P + R+WL AE P+Q LA C + F SH+PV DG+CNGLQ+++A+
Sbjct: 489 NPYDN-RFWLTAEKPWQALAFCFEWQGYVAEGF--AFHSHLPVQMDGTCNGLQNFSAMLL 545
Query: 746 DTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP-------------------AV 786
D +G AAVNLV +KP D+Y+ +A+ ++ ++ A P V
Sbjct: 546 DEIGGAAVNLVPSDKPNDIYATVASVLIAKLRDIAAACPEDTTTKEVKDKETKENKTIVV 605
Query: 787 FPDALRA-KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI-------KRRLKERGAPMEE 838
D A K L + RK+ K+ VMT YG + G R+Q+ ++ P E
Sbjct: 606 ESDGSMARKWLAYGITRKVTKRPVMTLAYGASEFGFREQVFTDTVTPWKQAAGEAFPF-E 664
Query: 839 AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPY 898
F A+ + + +GE+ AA G M WL + AKI A E+ PV W TP GL V+Q Y
Sbjct: 665 GTGFAAASFLGLLIWDCVGEVVVAAAGAMDWLQKVAKIAAKESLPVIWNTPAGLKVMQEY 724
Query: 899 RKLGRHTVKTSLQILTLQRE----TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
+ ++ + Q + LQ ++K+ ++Q + PN+VHS+D +HM +T C
Sbjct: 725 TTSEQKRLELTFQKVRLQLSIDVASKKIDKRKQGSGISPNWVHSMDAAHMQLTVSRCHDE 784
Query: 955 GL-TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV-----F 1008
G+ +F+ +HDSY THA + M + LRE+FV++Y ++L F + ++
Sbjct: 785 GIRSFSLIHDSYGTHAGNAWAMAQFLREEFVKMYGD---HDVLAEFGREITAMLPEGTQL 841
Query: 1009 PPLPERGDFDLREVLGSPYFF 1029
PPLPE+G DL +VL S +FF
Sbjct: 842 PPLPEKGSLDLSQVLESAFFF 862
>gi|355712786|gb|AES04465.1| polymerase mitochondrial [Mustela putorius furo]
Length = 375
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 172/378 (45%), Positives = 236/378 (62%), Gaps = 14/378 (3%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
PML PP+ WT GA P+ +MR+ G Q + + P L +AL LGN
Sbjct: 1 PMLCPPLPWTSPHTGAFLLSPTKLMRSLEGTVQHQRLLDSCPPADLHGALDALTQLGNCA 60
Query: 519 WRVNNRVLSVLDRIWSCGG--RLADLVDRNDVPLPEK---PETEDEAQLRKWQWKVRNVK 573
WRVN RVL ++ +++ G L ++ P P P AQ + + ++
Sbjct: 61 WRVNGRVLDLVLELFTAKGCPHLGVPAPASEAPRPPDGRLPPGASPAQKAEVRRELARCL 120
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
K RE HS R D +LS+A+ ++ F+ PHN+DFRGR YP P+ +HLGSDL R +L
Sbjct: 121 KVAREMHSLRSDALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFHHLGSDLARALL 179
Query: 634 EFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
EFA+GR LG GL WLK+HL NL G + S + RLAF + + DI DSAD+P+ GR+W
Sbjct: 180 EFAQGRPLGARGLDWLKVHLVNL-TGLKKRESLQARLAFADEVMKDILDSADRPMTGRKW 238
Query: 694 WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
W++ ++P+Q LA C+ + A+R+ P ++SH PVHQDGSCNGLQHYAALGRD++GAA+V
Sbjct: 239 WMQVDEPWQALACCMEIARAVRAPDPAAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASV 298
Query: 754 NLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSV 813
NL+ + P DVYSG+AA+V V ++DA+R V A++L + RK+VKQTVMT V
Sbjct: 299 NLLPSDVPQDVYSGVAAQVEVFRRQDAKRGVGV------AQVLEGFISRKVVKQTVMTVV 352
Query: 814 YGVTYIGARDQIKRRLKE 831
YGVT G R QI+RRL+E
Sbjct: 353 YGVTRYGGRLQIERRLRE 370
>gi|254504157|ref|ZP_05116308.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|254505310|ref|ZP_05117458.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|222436154|gb|EEE42836.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|222440228|gb|EEE46907.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
Length = 573
Score = 325 bits (834), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 204/576 (35%), Positives = 304/576 (52%), Gaps = 31/576 (5%)
Query: 474 GAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
G ++ + +MR K P + L+ LG T R+N RV +VL+ W
Sbjct: 10 GGYYMIQEDIMRCGIFKHS----GSNPNAISDDALRTLNALGATPKRINQRVFAVLNEAW 65
Query: 534 SCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERH-------SQRCDI 586
G ++A L +D +P + E E+ + K + +E E H S R
Sbjct: 66 MAGDQIAGLPSAHDPVVPGRKEDEEWEDMSKDEQSEHKASRE--EAHMEIVRLGSSRKQF 123
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
KLSVAR+M D FY P +DFRGR YPM + G D+C+G++EFA G+ LG GL
Sbjct: 124 LDKLSVAREMADHPEFYEPFFLDFRGRFYPMCETFHSQGDDVCKGLIEFARGKPLGSRGL 183
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
+WL + AN + G DKL + R +T +HLD I + A PL+G RWW +A++P+ LA
Sbjct: 184 YWLAVRAANCF--GEDKLPLDERYQWTLDHLDQIIECAMDPLDGSRWWTQADEPWGFLAT 241
Query: 707 CINLTE--ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
C L E AL S E ++SH+ + DGSCNGLQH +A+ +D +GA A NL+AR + D+
Sbjct: 242 CFELDEATALGDRSVE-YVSHLAIPLDGSCNGLQHLSAMSKDPVGAKATNLMARAQREDI 300
Query: 765 YSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQ 824
Y +AA I+ D + + A L + RK+VK+ VMT+ YGVT G Q
Sbjct: 301 YLEVAASARRILASDIT-NGVEWSAQWLAVLEDTAKGRKVVKRAVMTTPYGVTERGIATQ 359
Query: 825 IKR----RLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE 880
+ + +L M + E + A+ Y V + AL E AA+ +M+W+ CA+ +A +
Sbjct: 360 LYKDGHVKLLAGYKEMTKPEKWAAASYLKDVIVKALSETIAAAKQVMAWIQTCAEKMADQ 419
Query: 881 NQPVRWTTPLGLPVVQPYRKLGRHTVKT--SLQILTLQRETEKVMVKRQRTAFPPNFVHS 938
N P+ W TP + Q Y L R VKT Q+L + + K+Q A PN +HS
Sbjct: 420 NVPLVWKTPNNNLITQSYFNLARSKVKTLYGEQVLWSEDPLSGLNPKKQALASAPNLIHS 479
Query: 939 LDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD 997
D +H+ T A AG + F +HDS+ HACD D++ LR++FV++Y + L +
Sbjct: 480 FDAAHLSRTVNALADAGNSDFLMIHDSFGVHACDTDQLALTLRKEFVDIYSTNWLDTLHE 539
Query: 998 SFQKSFPKLVFPPLPE---RGDFDLREVLGSPYFFN 1030
++ ++ P + P E +GDFD+ EVL S +FF+
Sbjct: 540 TWAEACPSI--PHWKEFLGQGDFDVAEVLRSDFFFS 573
>gi|68469100|ref|XP_721337.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|68470125|ref|XP_720824.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|77022784|ref|XP_888836.1| hypothetical protein CaO19_6499 [Candida albicans SC5314]
gi|46442714|gb|EAL02001.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|46443252|gb|EAL02535.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|76573649|dbj|BAE44733.1| hypothetical protein [Candida albicans]
Length = 1218
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 220/735 (29%), Positives = 343/735 (46%), Gaps = 124/735 (16%)
Query: 334 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 393
G +TT EK++ ++ + P ++ V F+ DA K+ ++++L+
Sbjct: 394 GSPDGKLTTVIEKMKYSFPSVLSQHASPNLKGEV-----FQYINDDAYIKLTHQLVKLII 448
Query: 394 QTAYI------------------QSPADQL---ADAPPDIFPAFTHALRTVSKETKGGSK 432
+ + + ADQ + D + AF + + T +K
Sbjct: 449 ENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRI---TNTKNK 505
Query: 433 KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQ 492
Y +++ +P + L+ + Y+PML PP W G + + + + T+ + Q
Sbjct: 506 TYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQV 565
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW-SCGGRLADLVDRNDVPLP 551
+ + QL+ + LD +GNT W +N +L V +++ + G L+ D LP
Sbjct: 566 ELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPSVPDETLP 625
Query: 552 EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM-KDEEGFYYPHNVDF 610
+K +TE S R E+ +A ++ + Y+ +++DF
Sbjct: 626 QKTKTE---------------------LKSLRITFEIMNKLANAFGENGDLLYHCYSLDF 664
Query: 611 RGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRL 670
RGR YP P L H G DL R + F LG +G +W+K LA+L+ + L
Sbjct: 665 RGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCL 716
Query: 671 AFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL----RSSSPETFISHI 726
F E + D+I DSA P+ G++WW+KA+ PF LAVC + + L E + +
Sbjct: 717 EFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRL 776
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
P+HQDGSCNGLQHYA L D G AAVNL+ E DVY+ + V I++D
Sbjct: 777 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDISEQNLG 836
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-----RGAP------ 835
+ AK L ++RKLVK+ VMT+VYGVT GA QI + +KE R P
Sbjct: 837 TVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFS 896
Query: 836 ------MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK-IIASENQ------ 882
++ +L S Y AK L ++ E+F A+ I WL + K I+ S N
Sbjct: 897 NETLHKLKSVQLTQTS-YLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHL 955
Query: 883 -------------------PVRWTTPLGLPVVQPYRK---------LGRHTVKTSLQILT 914
P+ W +P GLPV+Q YRK +G+ T S ++
Sbjct: 956 LNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSP 1015
Query: 915 LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
+ R ++ PNF+HSLD +H+ MT + KAGLTF+ +HDSYWTH +V++
Sbjct: 1016 MDR-------RKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEK 1068
Query: 975 MNRILREKFVELYEM 989
+++ILRE+FVELY M
Sbjct: 1069 LSKILREQFVELYSM 1083
>gi|238883374|gb|EEQ47012.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 1218
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 219/735 (29%), Positives = 342/735 (46%), Gaps = 124/735 (16%)
Query: 334 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 393
G +TT EK++ ++ + P ++ V F+ DA K+ ++++L+
Sbjct: 394 GSPDGKLTTVIEKMKYSFPSVLSQHASPNLKGEV-----FQYINDDAYIKLTHQLVKLII 448
Query: 394 QTAYI------------------QSPADQL---ADAPPDIFPAFTHALRTVSKETKGGSK 432
+ + + ADQ + D + AF + + T +K
Sbjct: 449 ENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRI---TNTKNK 505
Query: 433 KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQ 492
Y +++ +P + L+ + Y+PML PP W G + + + + T+ + Q
Sbjct: 506 TYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQV 565
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW-SCGGRLADLVDRNDVPLP 551
+ + QL+ + LD +GNT W +N +L V +++ + G L+ D LP
Sbjct: 566 ELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPSVPDETLP 625
Query: 552 EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM-KDEEGFYYPHNVDF 610
+K +TE S R E+ +A ++ + Y+ +++DF
Sbjct: 626 QKTKTE---------------------LKSLRITFEIMNKLANAFGENGDLLYHCYSLDF 664
Query: 611 RGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRL 670
RGR YP P L H G DL R + F LG +G +W+K LA+L+ + L
Sbjct: 665 RGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCL 716
Query: 671 AFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL----RSSSPETFISHI 726
F E + D+I DSA P+ G++WW+KA+ PF LAVC + + L E + +
Sbjct: 717 EFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRL 776
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
P+HQDGSCNGLQHYA L D G AAVNL+ E DVY+ + V I++D
Sbjct: 777 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDISEQNLG 836
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-----RGAP------ 835
+ AK L ++RKLVK+ VMT+VYGVT GA QI + +KE R P
Sbjct: 837 TVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFS 896
Query: 836 ------MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAK-IIASENQ------ 882
++ +L S Y AK L ++ E+F A+ I WL + K I+ S N
Sbjct: 897 NETLHKLKSVQLTQTS-YLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHL 955
Query: 883 -------------------PVRWTTPLGLPVVQPYRK---------LGRHTVKTSLQILT 914
P+ W +P G PV+Q YRK +G+ T S ++
Sbjct: 956 LNNNPSSFETIFTTPVSFFPISWISPCGFPVIQSYRKILTSRFNGAIGKTTWNNSNKLSP 1015
Query: 915 LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
+ R ++ PNF+HSLD +H+ MT + KAGLTF+ +HDSYWTH +V++
Sbjct: 1016 MDR-------RKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEK 1068
Query: 975 MNRILREKFVELYEM 989
+++ILRE+FVELY M
Sbjct: 1069 LSKILREQFVELYSM 1083
>gi|241957393|ref|XP_002421416.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223644760|emb|CAX40751.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1211
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 205/645 (31%), Positives = 308/645 (47%), Gaps = 98/645 (15%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
+PAF + ++ + +K Y +E +P + L+ + Y+PML PP W +
Sbjct: 482 YPAFCKETKRITSK----NKTYITVEVHPYIESKLQSLKLGTHLHYLPMLHPPKPWVSPE 537
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
G + + + + T+ + Q + + QL+ + LD +GNT W +N +L + +++
Sbjct: 538 SGGYLTIKTNFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPFMLDIFNKL 597
Query: 533 WS--CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
G L+ D LP+K +TE S R E+
Sbjct: 598 MEEEPNGFLSIPPLVPDATLPQKTKTE---------------------LKSLRITFEIMN 636
Query: 591 SVARKM-KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
+A K+ + Y+ +++DFRGR YP P L H G DL R + F LG +G +W+
Sbjct: 637 KLANAFGKNGDLLYHCYSLDFRGRVYPFSP-LTHYGGDLARSLFMFWHSEPLGPNGFYWI 695
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
K LA+L+ L F E + D+I DSA P+ GR+WW+KA+ PF LAVC
Sbjct: 696 KYQLASLFG-------QNNCLEFYEENHDNIVDSARNPMGGRKWWMKADKPFSALAVCFE 748
Query: 710 LTEAL---RSSS-PETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
+ + L RS E + P+HQDGSCNGLQHYA L D G AAVNL+ E DVY
Sbjct: 749 IIKILDHCRSGGRIEDYKCRFPIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVY 808
Query: 766 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
+ + V I++D A+ L ++RKLVK+ VMT+VYGVT GA QI
Sbjct: 809 TKVLEIVKKKIEQDVVEQNLEIDKLETAEFFLPILNRKLVKRPVMTTVYGVTLAGASSQI 868
Query: 826 KRRLKE-----RGAPME-----------EAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
+ +KE R P + ++ + Y A+ L ++ E+F A+ I W
Sbjct: 869 LQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLSQTSYLARKILDSIDELFVHAKQIEKW 928
Query: 870 LGECAK-IIASENQ-------------------------PVRWTTPLGLPVVQPYRK--- 900
L + K I+ S N P+ W +P G PV+Q YRK
Sbjct: 929 LLQNTKRILTSYNIKTIDHLLANNSSLFESIFTTPVSFFPMSWISPCGFPVIQAYRKIPT 988
Query: 901 ------LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
+G+ T S ++ + R ++ PNF+HSLD +H+ MT + KA
Sbjct: 989 IRFHGAIGKTTWNNSSKLSPMDR-------RKHELGIAPNFIHSLDAAHLFMTCDSANKA 1041
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
GLTF+ +HDSYWTH +V+ ++RILRE+FVELY M + + F
Sbjct: 1042 GLTFSAIHDSYWTHPNNVENLSRILREQFVELYSMDYLQYVRQDF 1086
>gi|147865920|emb|CAN83054.1| hypothetical protein VITISV_027927 [Vitis vinifera]
Length = 1299
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 162/272 (59%), Positives = 180/272 (66%), Gaps = 66/272 (24%)
Query: 548 VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS---------------- 591
VPLPEKP TED +++ W+W R KK N+ERHS RCD E+KLS
Sbjct: 934 VPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSLMIKPGFEDSLAQMKY 993
Query: 592 ---------------------------------VARKMKDEEGFYYPHNVDFRGRAYPMH 618
VARKMKDEEGFYYPHN+DFRGRAYPMH
Sbjct: 994 WRGSVKSRLLWLPSLEELCSFVSFSAKQXHFEQVARKMKDEEGFYYPHNLDFRGRAYPMH 1053
Query: 619 PYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLD 678
P+LNHL SDLCRG+LEFAEGR LGKSGL WLKI LANLYAGGV+KLS++GRLAF +NHLD
Sbjct: 1054 PHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLD 1113
Query: 679 DIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQ 738
D+FDSAD PL G RWWL AEDPFQCLA CINL+EALRSSSP T ISH+P+HQ
Sbjct: 1114 DVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQ-------- 1165
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
L A+AVNLVA EKPADVYS IAA
Sbjct: 1166 ---------LEASAVNLVAGEKPADVYSEIAA 1188
>gi|224116192|ref|XP_002331984.1| predicted protein [Populus trichocarpa]
gi|222832108|gb|EEE70585.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/266 (62%), Positives = 185/266 (69%), Gaps = 36/266 (13%)
Query: 207 AANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFD 266
A EY+ELL DMCE KLAPNLPY KSLFLGWFEP DAIAKEQE RM K + YAPYFD
Sbjct: 2 ATKEYKELLKDMCEHKLAPNLPYTKSLFLGWFEPFTDAIAKEQELIRMGKSRKGYAPYFD 61
Query: 267 QLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNET 326
LPAD M+VI MH+L ++MTGGEHG ARVV AAC+IGDAIEQE+RIH LEKT+KK E
Sbjct: 62 LLPADKMSVIAMHQLGAMVMTGGEHGCARVVTAACMIGDAIEQEIRIHNILEKTRKKKEK 121
Query: 327 KN--KEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKV 384
N K EG ES V EQE LRKKV
Sbjct: 122 ANDSKNGVEG-ESPAVMKEQENLRKKV--------------------------------- 147
Query: 385 GSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVL 444
GSR+IELL QTAYIQ P+DQLAD+P + PAF H RTVS E K G+KKYGVI+C+PLVL
Sbjct: 148 GSRLIELLLQTAYIQPPSDQLADSPSEPRPAFVHTFRTVSYENKKGAKKYGVIQCDPLVL 207
Query: 445 KGLERTARHMVIPYMPMLVPPVKWTG 470
KGLE+TARHMVIPYMPMLVPP++W G
Sbjct: 208 KGLEKTARHMVIPYMPMLVPPLRWRG 233
>gi|405963522|gb|EKC29086.1| DNA-directed RNA polymerase, mitochondrial [Crassostrea gigas]
Length = 689
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 177/423 (41%), Positives = 247/423 (58%), Gaps = 26/423 (6%)
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV-LDRIWSCGGRLADL------VDRNDV 548
+++ P+ L PV ++L+ LG W++N ++L V L+ G DL + +
Sbjct: 200 LEKYPENSLHPVMDSLNILGTCGWKINTKMLDVVLELFRENAGAFLDLPPAKHTLQKPVF 259
Query: 549 PLPEKPETE-------DEAQLRKWQ-WKV-RNVKKENRERHSQRCDIELKLSVARKMKDE 599
PL E E E +E + RK W V N+KK+ E HS C + L++A ++DE
Sbjct: 260 PLQETKELEKQYAQEVEELKKRKADLWTVFYNLKKQRAETHSLWCHLHRTLTIADSLRDE 319
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
++PH++DFRGR YP P+LN+ G D+ R + +FA G+ LG+ GL WLKIHL NL G
Sbjct: 320 -VIWFPHSLDFRGRCYPFMPHLNYHGDDVRRSLFQFANGKPLGEKGLDWLKIHLINL-TG 377
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ S++ RL + DI DSAD PL+G +WW +++PFQ LA CI +T A+RS P
Sbjct: 378 FAKRSSNKERLHLANTLMSDIMDSADNPLKGGKWWQTSDEPFQTLAACIEVTAAMRSKDP 437
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
F+S+ P HQDGSCNGLQHYAALGRD GA +VNL P DVYS + V I QRD
Sbjct: 438 TQFVSYFPTHQDGSCNGLQHYAALGRDQAGAESVNLSPFTHPQDVYSDVVDLVEKIRQRD 497
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
A+ + A+ L + RK +KQTVMTSVYGVT GA+ QI +++ +
Sbjct: 498 AEEGLEI------AQKLDGLIKRKTIKQTVMTSVYGVTMYGAKLQIHKQISTLPQESLVS 551
Query: 840 EL-FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQP 897
+L AS Y A+ T AL EMF +AR I +W A+ +A + P +W P+G+PV+QP
Sbjct: 552 DLHLPASVYLARCTFKALEEMFSSARSIQNWFTLIAQGLAKDCKMPTQWVMPMGIPVIQP 611
Query: 898 YRK 900
Y K
Sbjct: 612 YMK 614
>gi|317487306|ref|ZP_07946101.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
gi|316921496|gb|EFV42787.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
Length = 882
Score = 319 bits (818), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 251/907 (27%), Positives = 417/907 (45%), Gaps = 119/907 (13%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
L RQ+++E E ++ + Y + E+ N Y K L EP+ AI++ E
Sbjct: 25 LFARQIELEKEMADRGRDRYYTTVARNTERNAEANTSYGKMLLKRGIEPMARAISEFMES 84
Query: 252 CRMA----KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
+ +HK + + ++A I + K++ + R ++ +
Sbjct: 85 AKQGGAGRRHKAV--GMLEGMDVQVVAFIALRKVLDTFSQSMPYQRVSIL---------V 133
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
+EV + K L + K+++ + + + ++ K R+ V + +
Sbjct: 134 GREVEMEKKLTELKEQDPDRYRMTQR----YIAGSKARKYRRTVLNYAFGKSTTV----- 184
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
+++PW + +G ++IEL ++ I H ++ S++
Sbjct: 185 ----EYEPWAEADCLHLGQKLIELAMESCGI------------------FHLVQVPSQKV 222
Query: 428 KGGS---KKYGVIECNPLVLKGLERTARH--MVIP-YMPMLVPPVKWTGYDKGAHF--FL 479
KG + + +E P + +ER H M+ P Y+P L+ P W G G ++ L
Sbjct: 223 KGKTMFQSTHYSLEPTPSCREWVERHKDHASMMYPDYLPTLIEPKPWEGAGGGGYYSDAL 282
Query: 480 PSYVMRTHGAKQQRDTV-KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS-CGG 537
P + G + + KR +++ V A++ L NT W +N V V +W G
Sbjct: 283 PRLSLVKTGNLGYLEALDKRIQAGEMDTVINAVNALQNTGWSINPTVFEVASYLWDETDG 342
Query: 538 RLADLVDRNDVPLPEKP----ETEDEAQLR---------------KWQWKVRNVKKENRE 578
+A L R+ LP P + D A R +W+ + +++ N
Sbjct: 343 GVAGLPPRDGYRLPPCPTCGADLTDTAAARVRHTCLDALPLEDFNEWKKEAFRIRELNIS 402
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
QR + L++A + KDE F++P+ +DFRGR Y + YL G+DL +G+L FAEG
Sbjct: 403 LFGQRIGVAKTLTMAARFKDEPRFFFPYQLDFRGRIYAVPSYLTPQGTDLAKGLLRFAEG 462
Query: 639 RTLGK-SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
+ LG + WL IH +N + G DK+S + R ++ H +I + A+ P WW +A
Sbjct: 463 KPLGTMQAVRWLAIHGSNCF--GNDKVSLDDRHSWVLQHQQEILECAEDPFS-HAWWHEA 519
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA 757
++PF LA C+ +R F+SHIPV DG+CNGLQ ++ + RD +G +AVNL+
Sbjct: 520 DEPFCFLAFCLEWAGYVREGL--DFVSHIPVAMDGTCNGLQIFSLILRDKVGGSAVNLLP 577
Query: 758 REKPADVYSGIAARVLVIIQRDAQRDP------------AVFPDALRAKLLLSQ-VDRKL 804
KP D+Y +A +V+ ++ DA DP A + A A +LL ++RK
Sbjct: 578 AAKPQDIYQIVADKVIGKLKTDAA-DPDKDAIVTTKEGKAFYNPAKSAAILLDMGINRKT 636
Query: 805 VKQTVMTSVYGVTYIGARDQIKRRLKER---GAPM--EEAELFGASCYAAKVTLTALGEM 859
K+ VM YG T R+ + +K++ G P E+ + G S Y + A+GE
Sbjct: 637 TKRQVMVLPYGGTKESCREYSEEWVKDKIRNGYPQLPEDVSIRGLSYYLSTHVWDAIGET 696
Query: 860 FQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT----SLQILTL 915
AAR M +L + A ++ + P++WTTP G PVVQ Y +KT S+ L +
Sbjct: 697 VIAARDAMKYLQDMAGVMNKLDLPIKWTTPAGFPVVQKYMDKKERRIKTKIGDSIVKLNI 756
Query: 916 QRETEKVMVK-RQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVD 973
E+ + K +Q++A PN+VHSLD + +M T C + FA +HDSY THA D
Sbjct: 757 SEESTTDLDKPKQKSAISPNYVHSLDAAALMKTVNGCLAQNIGNFAMIHDSYGTHAADSV 816
Query: 974 EMNRILREKFVELY-----------EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
+ LR FVE++ + + ++ + P L P LP GD D+ EV
Sbjct: 817 ALAATLRRTFVEMFGGEGVNPLEQWKNEVLASVPEPMLAELPDL--PILPATGDLDVGEV 874
Query: 1023 LGSPYFF 1029
SP+FF
Sbjct: 875 AHSPFFF 881
>gi|255731650|ref|XP_002550749.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131758|gb|EER31317.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 1205
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 215/642 (33%), Positives = 313/642 (48%), Gaps = 92/642 (14%)
Query: 413 FPAFTHALRTVSKE--TKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTG 470
+PAF ++KE ++ G Y I+ +P + LE Y+P+L PP WT
Sbjct: 476 YPAFF-----IAKEYDSRIGYAVY-TIDIHPYLESKLETFTTGTYFRYLPLLCPPKPWTN 529
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
G + + ++ T ++ K + QL+ + LD +GNT W +N ++L V +
Sbjct: 530 SQNGGYLNYQTRLIATTDTVHKKLLEKAGVRGQLDSAYNCLDQIGNTPWAINPQMLDVFN 589
Query: 531 RIWSC-GGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
++ + G L D LP K E RE + R IE+
Sbjct: 590 KVINYPNGFLEIPAIIPDSNLPSK---------------------ERRELKNLRTSIEIT 628
Query: 590 LSVARKM-KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
VA K+ + Y+ + +DFRGR Y P L H GSDL R + F + + LG++G +W
Sbjct: 629 NKVANAFGKNGDLLYHCYMLDFRGRVYTFSP-LTHYGSDLTRSLFLFWKSQPLGENGFYW 687
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
+K LA+L+ G+ F E + +I DSA PL+G RWW+KA+ PF L+VC
Sbjct: 688 VKYQLASLF--GIKNCEE-----FYEENKQNIIDSAMNPLDGSRWWMKADKPFCALSVCF 740
Query: 709 NLTEAL----RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR-EKPAD 763
+ L ++ E ++S +P+HQDGSCNGLQHYAAL D G AVNL+ + D
Sbjct: 741 EIKNILDFQESGNNIEDYLSRLPIHQDGSCNGLQHYAALAADENGGRAVNLIGVGDSKQD 800
Query: 764 VYSGIAARVLVIIQRDAQRDPAVFPDAL--RAKLLLSQVDRKLVKQTVMTSVYGVTYIGA 821
VY + V I++D + A P+ AK L + RKLVK+ VMT+VYGVT GA
Sbjct: 801 VYIEVMKVVRGKIEKDIK--DAKLPEETIDLAKFYLKILCRKLVKRPVMTTVYGVTLAGA 858
Query: 822 RDQIKRRLKE-----RGAP----MEEAEL-------FGASCYAAKVTLTALGEMFQAARG 865
QIK +KE R P ++ L + Y A+ L ++ E+F A+
Sbjct: 859 SAQIKSTIKEILDEHRTNPEINTFDQETLARLSTFKLNHTMYLARKVLESIDELFGHAKQ 918
Query: 866 IMSWLGECAKIIAS------------------EN--------QPVRWTTPLGLPVVQPYR 899
I +WL + K I + EN P+ WT P G PV+Q YR
Sbjct: 919 IETWLLQNTKRILTAYNVKLLDYVQEKDTKLYENIFKRSVSYTPMSWTAPSGFPVIQIYR 978
Query: 900 KLGRHTVKTSLQILTLQRETEKVMVKRQR--TAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
++ ++ LT++ + + R + A PNF+HSLD SHM MT K G+T
Sbjct: 979 QIKHKMSSGPMEELTIRNWNKLYPMDRYKHELAIAPNFIHSLDASHMFMTCEEANKQGIT 1038
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
F+ +HDSYWTH VD+++RILREKFVELY E + F
Sbjct: 1039 FSAIHDSYWTHPVHVDQLSRILREKFVELYSFDYLEYVKQEF 1080
>gi|321454096|gb|EFX65282.1| hypothetical protein DAPPUDRAFT_264936 [Daphnia pulex]
Length = 399
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 229/387 (59%), Gaps = 60/387 (15%)
Query: 611 RGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRL 670
RGR YP P+L HL D+ R +L FA+G+ LG G +WLK+H+ NL G + R
Sbjct: 52 RGRVYPCSPHLTHLSHDMARSLLFFAQGKPLGADGFNWLKLHVINL-TGTKKREPISERH 110
Query: 671 AFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS-SSPETFISHIPVH 729
A+ E + +I DSAD PL GR+WW+ +++P+Q LA C+ + ALR PE + H+P+H
Sbjct: 111 AYAEKIMPEILDSADNPLTGRQWWVNSDEPWQTLAACMEVANALRCPEGPEAYGCHLPIH 170
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPD 789
QDGSCNGLQHYAALGRDT+GA +VNL ++P DVYS +A +++R+ +D A +
Sbjct: 171 QDGSCNGLQHYAALGRDTVGAESVNLTPTDRPQDVYSNVAN----LVERERSKDAA--NN 224
Query: 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAA 849
A+LL ++RK++KQTV+T+VYGVT
Sbjct: 225 VEIAQLLAGLINRKIIKQTVITTVYGVT-------------------------------- 252
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIAS-ENQPVRWTTPLGLPVVQPYRKLGRHTVKT 908
F +A+ I W E AK+I++ + V W TP+GLPVVQ Y + +
Sbjct: 253 ---------RFTSAKDIQDWFTESAKLISTVAGESVEWITPIGLPVVQSYNNNPYEAINS 303
Query: 909 SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
++ +++ +K QR AFPPNF+HS D SHMM+TA+ C++ G+TFA +HD +WTH
Sbjct: 304 NI---------DRIAIK-QRNAFPPNFIHSSDSSHMMLTALYCQRKGITFASIHDCFWTH 353
Query: 969 ACDVDEMNRILREKFVELYEMPIFENL 995
C V EMN+I R++FV L+ PI E+L
Sbjct: 354 PCTVAEMNKICRQQFVSLHSQPILEDL 380
>gi|149234804|ref|XP_001523281.1| hypothetical protein LELG_05507 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146453070|gb|EDK47326.1| hypothetical protein LELG_05507 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1259
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 212/659 (32%), Positives = 312/659 (47%), Gaps = 84/659 (12%)
Query: 398 IQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIP 457
I+S + P ++ AFT L++ K K I NP + K ++ +
Sbjct: 506 IESMQKLKGNPAPGLYRAFTDILKSNKKHAK-----VRFILINPALSKSVKLGSTFGDQH 560
Query: 458 YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNT 517
+ P+L PP W G+ G + QR K + +L+ F LD +G T
Sbjct: 561 FFPLLCPPQPWLGHSTGGMMNSAINFVAGFDKLHQRFLQKAQLQGKLDRAFLCLDQMGKT 620
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENR 577
W VN +L V ++ L + D +P KP+ + +R Q K+ K
Sbjct: 621 GWCVNTDILDVFNKAMDLPSGLLKIPPPLDT-MPTKPKDQTARDVRN-QRKIYETIKAVA 678
Query: 578 ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE 637
+ DI ++ + DFRGRAY + +NH G D+ R + +F E
Sbjct: 679 NAYGVNGDI---------------LFHCYLFDFRGRAYALSQ-INHYGEDIMRSLFQFWE 722
Query: 638 GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG---RRWW 694
+ LG+ G +WLK LA+L+ G + E F E H ++I +A PL+ RRWW
Sbjct: 723 AKPLGERGFYWLKYQLASLFKPGKETSCEE----FFEKHKNNILQAASNPLDDEALRRWW 778
Query: 695 LKAEDPFQCLAVCINLTEALR----SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
L+A+ PFQ LA C+ + + L+ ++ TFI +P+HQDGSCNGLQHYA L RD LG
Sbjct: 779 LQADKPFQFLATCMEVAKVLKHLGNGNNVATFICRMPIHQDGSCNGLQHYAGLARDDLGG 838
Query: 751 AAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
+VNL+ E DVY + V I+ D A + +AKL+L +DRKLVK+ VM
Sbjct: 839 RSVNLLPLETKMDVYVEVRDLVEKKIRNDIGTQLAAPEEVAKAKLILQILDRKLVKRPVM 898
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA----------------SCYAAKVTLT 854
T+VYGVT GA +QI R+KE +E+ + + Y +
Sbjct: 899 TTVYGVTRYGASEQIYSRIKEMINGIEQNPAKSSADDVLLSRLKTFQQRDATYLVEKIFA 958
Query: 855 ALGEMFQAARGIMSWLGECA-KIIASEN-------------------------QPVRWTT 888
A+ ++F+ A+ I +WL A +I S N P+ W +
Sbjct: 959 AIDDLFKNAKRIETWLTHTANRINTSYNVKTLDYLYRLKRSLKDTYITNPVNLAPISWIS 1018
Query: 889 PLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV----KRQRTAFPPNFVHSLDGSHM 944
G PV+Q YR + + V+T + + R+ + K+ A PNF+HSLD SHM
Sbjct: 1019 VSGFPVIQVYRDMPK--VQTQGVLGSTSRDASENFAPMDRKKHELAIAPNFIHSLDASHM 1076
Query: 945 MMT--AVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
MT A A L FA +HDSYWTHACDVD ++ ILRE+FVE+Y E + F++
Sbjct: 1077 AMTCSAAAAENPSLVFASIHDSYWTHACDVDRLSVILREQFVEMYSFDYMEVVKRDFER 1135
>gi|355755256|gb|EHH59003.1| DNA-directed RNA polymerase, mitochondrial [Macaca fascicularis]
Length = 1119
Score = 315 bits (807), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 167/365 (45%), Positives = 225/365 (61%), Gaps = 32/365 (8%)
Query: 689 EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
+GR+WW+ AE+P+Q LA C+ + A+R S P ++SH+PVHQDGSCNGLQHYAALGRD++
Sbjct: 764 QGRKWWMGAEEPWQTLACCMEVANAVRCSDPAAYVSHLPVHQDGSCNGLQHYAALGRDSV 823
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808
GAA+VNL + P DVYSG+AA+V V ++DAQR V A++L + RK+VKQT
Sbjct: 824 GAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGTRV------AQMLEGFITRKVVKQT 877
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
VMT VYGVT G R QI++RL+E +E ++ AS Y + +L EMF R I
Sbjct: 878 VMTVVYGVTRYGGRLQIEKRLRELTDFPQEF-VWEASHYLVRQVFKSLQEMFSGTRAIQH 936
Query: 869 WLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT---SLQILTLQRE---TEKV 922
WL E A++I+ V W TPLG+P++QPYR H VK +Q +T ++K
Sbjct: 937 WLTESARLISHMGSVVEWVTPLGIPIIQPYRL--EHKVKQVRGGIQSITYTHNGDISQKP 994
Query: 923 MVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREK 982
++Q+ FPPNF+HSLD SHMM+TA+ C + GLTF VHD YWTHA DV MN++ RE+
Sbjct: 995 NTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVAVMNQVCREQ 1054
Query: 983 FVELYEMPIFENL-----------------LDSFQKSFPKLVFPPLPERGDFDLREVLGS 1025
FV L+ PI E+L ++ S K +P+ G FDL V S
Sbjct: 1055 FVRLHSEPILEDLSRFLVSRFCPNPTPRKISQCWEASQLKETLQAVPKPGAFDLERVKHS 1114
Query: 1026 PYFFN 1030
YFF+
Sbjct: 1115 TYFFS 1119
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G ++ E+L Q + S D + + P H + R V
Sbjct: 547 QPWPLPVQMELGKQLAEMLVQATRMPSSLDNRHGSS-RLVPVLYHVYSFRNV-------- 597
Query: 432 KKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT- 486
++ G+++ +P ++ LE TA + + +PML PP+ WT GA P+ +MRT
Sbjct: 598 QQIGILKPHPAYVQLLE-TAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTV 656
Query: 487 HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G
Sbjct: 657 EGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKG 707
>gi|83376020|gb|ABC17814.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 939
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 188/498 (37%), Positives = 277/498 (55%), Gaps = 56/498 (11%)
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY----MPMLVPPVKW 468
F AF LRT +G ++ ++ +P VL L + + + +PM+VPP W
Sbjct: 462 FQAFYKVLRT-----RGKGRELEEVKPHP-VLTSLFAIGKLSNLSFPVTELPMVVPPRPW 515
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVK---RTPKK--QLEPVFEALDTLGNTKWRVNN 523
G + H + R V+ TP+ +L P +AL+ LG+T W +N
Sbjct: 516 VSDSSGGYLL--------HEVEMTRRPVEEAVHTPRSANKLLPTLDALNQLGSTPWIINK 567
Query: 524 RVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET-EDEAQLRKWQWKVRNVKKEN------ 576
+L + ++ + + R V +P PE E A++R + K R++ ++
Sbjct: 568 PILECIVEVFRHPKKYGAYLKR--VGIPRHPENIEPPAEVRS-KAKFRDMTRDQYSAFQQ 624
Query: 577 ------------RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
E +S CD +LS+A+ +D Y+PHN+DFRGR YP+ PYLNH+
Sbjct: 625 GQAQRQAFIQLQAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYLNHM 683
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
G DL R +L FAEG+ LG GL WLK+H NL +G K S R+ + E++L DSA
Sbjct: 684 GCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGLXKKSSIRERMQYAEDNLSLFLDSA 742
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALG 744
P G++WWL++E+P+Q L CI L AL S+ P ++SH+P+HQDGSCNGLQHYAA+G
Sbjct: 743 SDPFGGKKWWLESEEPWQTLGACIELRNALSSADPANYVSHLPIHQDGSCNGLQHYAAMG 802
Query: 745 RDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP-AVFPDALRAKLLLSQVDRK 803
RD+LGA VNL+ E P DVY IA I++R D A P A+ LL + RK
Sbjct: 803 RDSLGAKFVNLIPSECPQDVYGEIA----FILERKRSEDAQAGHPIAI---LLNGAIQRK 855
Query: 804 LVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG-ASCYAAKVTLTALGEMFQA 862
++KQTVMT+VYGVT GA+ QI ++LK+ +P+ +E G AS Y A T +L EMF++
Sbjct: 856 VIKQTVMTTVYGVTKYGAKLQIAKQLKDIESPVIPSEKLGEASVYLAHRTFDSLNEMFES 915
Query: 863 ARGIMSWLGECAKIIASE 880
++ I +W CA +I+++
Sbjct: 916 SQKIQNWFISCADMISTD 933
>gi|426386358|ref|XP_004059652.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Gorilla
gorilla gorilla]
Length = 370
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 157/327 (48%), Positives = 213/327 (65%), Gaps = 13/327 (3%)
Query: 683 SADKPL--EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHY 740
+A PL +GR+WW+ AE+P+Q LA C+ + A+R+S P ++SH+PVHQDGSCNGLQHY
Sbjct: 48 TAPHPLSPQGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHY 107
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQV 800
AALGRD++GAA+VNL + P DVYSG+AA+V V ++DAQR V A++L +
Sbjct: 108 AALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGTRV------AQVLEGFI 161
Query: 801 DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMF 860
RK+VKQTVMT VYGVT G R QI++RL+E +E ++ AS Y + +L EMF
Sbjct: 162 TRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEASHYLVRQVFKSLQEMF 220
Query: 861 QAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR-HTVKTSLQILTLQRE- 918
R I WL E A++I+ V W TPLG+PV+QPYR + + +Q +T
Sbjct: 221 SGTRAIQHWLTESARLISHTGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNG 280
Query: 919 --TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMN 976
+ K ++Q+ FPPNF+HSLD SHMM+TA+ C + GLTF VHD YWTHA DV MN
Sbjct: 281 DISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMN 340
Query: 977 RILREKFVELYEMPIFENLLDSFQKSF 1003
++ RE+FV L+ PI ++L K F
Sbjct: 341 QVCREQFVRLHSEPILQDLSRFLVKRF 367
>gi|357516853|ref|XP_003628715.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522737|gb|AET03191.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 251
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 143/244 (58%), Positives = 183/244 (75%), Gaps = 12/244 (4%)
Query: 317 LEKTKKKNETKNKEDEE------------GDESNTVTTEQEKLRKKVTDLIKKQKLPAVR 364
+EKTK K T +K D + +E+ + E+++LR KV LIKKQK
Sbjct: 1 MEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQAL 60
Query: 365 RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVS 424
IVKG+D KPWGQ+A+ KVGSR+I+LL +TAY++ PA++ D PDIFPAF H L+T+S
Sbjct: 61 GIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTIS 120
Query: 425 KETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVM 484
++ GS++YGVIEC+P++ KGLE+TAR+MVIPYMPMLVPP W GYDKGA+ FLPSYVM
Sbjct: 121 NDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVM 180
Query: 485 RTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD 544
R HGAKQQRD +K PK QL+ +FEAL+TLGNTKWRVN VL V+D+IW+ GGR+ADLVD
Sbjct: 181 RIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVD 240
Query: 545 RNDV 548
R+DV
Sbjct: 241 RDDV 244
>gi|89148158|gb|ABD62822.1| mitochondrial single-subunit RNA polymerase [Heterolobosea sp. OSA]
Length = 310
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 156/316 (49%), Positives = 210/316 (66%), Gaps = 20/316 (6%)
Query: 624 LGSDLCRGILEFAEGRTLG-----------KSGLHWLKIHLANLYAGGVDKLSHEGRLAF 672
LGSDL RG+L+FA+ +G + G+ WLKIHLANL G DKLS + R+ +
Sbjct: 1 LGSDLNRGLLKFAKKVPIGAKYDFNYYINTRRGIFWLKIHLANL--CGQDKLSFDDRIKY 58
Query: 673 TENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDG 732
++++ +I DSAD PL G+RWWL +E+P+Q LA C LT +RS +PE F S IPV DG
Sbjct: 59 IDDNISNIMDSADHPLSGKRWWLDSENPWQSLASCFELTNVIRSPTPELFESQIPVQMDG 118
Query: 733 SCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR 792
SCNGLQHYAALGRD LGA VNL+ KP DVYSG+ V I+ DA+ + +
Sbjct: 119 SCNGLQHYAALGRDNLGALHVNLLPTIKPMDVYSGVLNVVKKNIEMDAKNEHPL------ 172
Query: 793 AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVT 852
A +L V R +KQTVMTSVYGVT++GAR+QI++RLKER ++E + +CY A VT
Sbjct: 173 ATILNGNVYRSTIKQTVMTSVYGVTWVGAREQIQKRLKER-KEIDEEMAYKCACYLATVT 231
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQI 912
L +LG++F +A+ IM WL E A +I+S ++PV W +PLGLPVVQPYR +HT+ T LQ
Sbjct: 232 LKSLGQVFSSAKAIMEWLNELAHLISSHDKPVMWVSPLGLPVVQPYRSKRKHTINTILQK 291
Query: 913 LTLQRETEKVMVKRQR 928
+T+ +K+ + R
Sbjct: 292 VTMIDNDDKLPIHLSR 307
>gi|323512084|gb|ADX87544.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_A]
Length = 883
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 236/828 (28%), Positives = 391/828 (47%), Gaps = 109/828 (13%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
YF + + A I + + +L + V + A IG IE E+R + ++ K
Sbjct: 104 YFAMIKPESAAFIIVKTTLNIL---AKEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 324 NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF----KPWGQD 379
+ + K + L K+ + KK + AV ++ + + + W +D
Sbjct: 161 FKERVKPN---------------LDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKD 205
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+ VG R IE+L + + + P A A V K T ++ + +
Sbjct: 206 VKFHVGIRAIEMLIEATGMVQLERKFKGIPDKDHEALHLAPEYVEKLT---NRAHALAGI 262
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTV 496
+P+ Y PM+V P +WTG G ++ P ++R G+K+ D
Sbjct: 263 SPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRALDRY 306
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG-RLADLVDRNDVPLPEKPE 555
++ + V++A++T+ T WR+N VL+V++ + + + D+ + + LPEKPE
Sbjct: 307 RQV---DMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPVEDVPSIDKLALPEKPE 363
Query: 556 TED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
D E L+KW+ + ++ + R S+R +E LS A K Y+P+N+D+RGR
Sbjct: 364 DIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDWRGR 423
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y + P N G+D+ +G+L FA+ +G G +WL +H AN GVDK+S E R+ +
Sbjct: 424 VYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRVKWV 480
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
++ +I SA+ PL+ WW + + PF LA C +++ +F S +P+ DG+
Sbjct: 481 NDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAFDGT 539
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDP--- 784
C+GLQH++A+ RD +G AAVNL+ +KP D+Y +A +V LVI + +
Sbjct: 540 CSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISGTEDEMQTLED 599
Query: 785 ----------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ L A+ L V R + K++VMT YG G DQ+
Sbjct: 600 KKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQVFEDTVMPAI 659
Query: 835 PMEEAELF---GASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------- 882
+ +F +C + AK+ A+ + AA M WL AK+++SE +
Sbjct: 660 DNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEVKDKKSGEIL 719
Query: 883 ----PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQR 928
PV WTTP G PV Y K LG H + ++ I R+ +++ +Q
Sbjct: 720 KHAMPVHWTTPNGFPVWSEYYKQEQKRIDCVILGTHRMALTINI----RDKKEIDAAKQT 775
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVEL 986
+ PNFVHS+D SH+ MT C K G+ +FA +HDS+ HA +M R +RE VE
Sbjct: 776 SGIAPNFVHSMDASHLQMTVNKCFKVYGIHSFAMIHDSFGCHAGFASKMFRAVRETMVET 835
Query: 987 Y-EMPIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFFN 1030
Y E + + + F++ + P LP +G+ +LRE+L S Y F+
Sbjct: 836 YEEHDVIQEFYNQFEQQLHESQIEKMPVLPRKGNLELREILKSLYTFS 883
>gi|441463239|gb|AGC35521.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph01]
Length = 858
Score = 305 bits (781), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 235/833 (28%), Positives = 382/833 (45%), Gaps = 128/833 (15%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
+ D+L D +A IT ++ + ++ + + + IG +E E KF E+ K
Sbjct: 86 FIDKLDVDTVANITARVILDEVTR-----KSNLTKTSLAIGSMLENEFNSRKFEEEMPKA 140
Query: 324 NETKNKEDEEGDESNTVTTEQEKL-RKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARA 382
++ K+ ++E L R+K + L+ +L V + + W + R
Sbjct: 141 HKKFLKK-----------AQKESLDRRKWSHLLYPARLLGV--------ELEEWSEKDRI 181
Query: 383 KVGSRVIELLTQ-TAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIE--- 438
VG +++++ Q T I+ Q S ++G +E
Sbjct: 182 LVGLKLVDIFIQSTGLIEREVVQ--------------------------SARFGTLELLT 215
Query: 439 CNPLVLKGLERT---ARHMVIPYMPMLVPPVKWTGYDKGAHF--FLPSYVMRTHGAKQQR 493
N ++ +E H+ YMP +VPP WT G ++ F +++TH +
Sbjct: 216 ANEATMRWMETENSRLEHLFPIYMPTIVPPKPWTSPFDGGYYTAFRRLKLVKTHNQQYLE 275
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
+ R L V+EA++ L +T W +N +VL V+ ++ G +A L + + +P +
Sbjct: 276 ELANR----DLSEVYEAINALQDTAWAINTQVLDVVRTLYETGAGVAGLPQADKLRMPAR 331
Query: 554 PE--------------TEDEAQ-LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
P TE++ + + W+ + EN +R L VA K KD
Sbjct: 332 PHWLPEGKEKMAVEDMTEEQVEEFKAWKAETHRTHVENAAISGRRASFLRTLGVAEKFKD 391
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL-GKSGLHWLKIHLANLY 657
EE F+YPH +D+RGRAYP+ YL G+DL RG+L F+ + + WL IH A +
Sbjct: 392 EEAFFYPHTLDWRGRAYPLPLYLTPQGNDLQRGLLTFSNAVPIHDQEAAEWLAIHGAGCW 451
Query: 658 AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWW--LKAEDPFQCLAVCINLTEALR 715
G DK+ E R+ + + + I SA+ P + R W K E +Q LA C R
Sbjct: 452 --GYDKVDMEERVQWVLRNEEQIIASAENPYDNRFWMDADKGEKKWQFLAFCFEWAGLKR 509
Query: 716 SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVI 775
++S +P+ DG+CNGLQ+++A+ D +G AAVNL+ ++P D+Y + V
Sbjct: 510 EGY--GYMSCLPIQMDGTCNGLQNFSAMLLDEVGGAAVNLIPADEPQDIYQKVCDIVCEQ 567
Query: 776 IQRD----------------AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYI 819
+ RD + + V A A L ++ RK+ K+ VMT YG
Sbjct: 568 LARDLNSSDMVMIKGKTDSGEEYEKVVCTVAEMASGWLPKMGRKVTKRPVMTLAYGARRF 627
Query: 820 GARDQIKR------RLKE-RGAPM------EEAELFG--ASCYAAKVTLTALGEMFQAAR 864
G Q+ R KE G P +A FG A+ Y + ++GE+ AR
Sbjct: 628 GFVSQVDEDTIKEWRTKEPEGYPFVSQGDDGKAIDFGYKAAQYMGGLIWDSVGEVVVKAR 687
Query: 865 GIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE---- 920
M WL +++ + E P+ W+TP+G V Q YR V T+ LQ +
Sbjct: 688 EAMDWLQAASQVASKEGLPINWSTPVGFLVQQAYRVPNMKRVDTTFNSQRLQIRYQHGVG 747
Query: 921 KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRIL 979
K+ +RQ + PN+VHSLD SH+M T ++ G+ +F+ +HDSY THA + + R L
Sbjct: 748 KIDSRRQASGISPNWVHSLDASHLMKTIGRSKREGINSFSMIHDSYGTHAGNAWALARYL 807
Query: 980 REKFVELYEMPIFENLLDSFQKSFPKLV---FPPLPERGDFDLREVLGSPYFF 1029
RE+FV++Y ++L F++ P LP RG+ DL++VL SP+FF
Sbjct: 808 REEFVQMYSQV---DVLTRFKEELEAQTGEKLPDLPARGNLDLQQVLDSPFFF 857
>gi|68299728|ref|YP_249577.1| RNA polymerase [Vibriophage VP4]
gi|66473267|gb|AAY46276.1| RNA polymerase [Vibriophage VP4]
Length = 883
Score = 305 bits (781), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 236/825 (28%), Positives = 390/825 (47%), Gaps = 103/825 (12%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
YF + + A I + + +L + V + A IG IE E+R + ++ K
Sbjct: 104 YFAMIKPESAAFIIVKTTLNIL---AKEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 324 NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF----KPWGQD 379
+ + K + L K+ + KK + AV ++ + + + W +D
Sbjct: 161 FKERVKPN---------------LDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKD 205
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+ VG R IE+L + + + P A A V K T ++ + +
Sbjct: 206 VKFHVGIRAIEMLIEATGMVQLERKFKGIPDKDHEALHLAPEYVEKLT---NRAHALAGI 262
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTV 496
+P+ Y PM+V P +WTG G ++ P ++R G+K+ D
Sbjct: 263 SPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRALDRY 306
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI--WSCGGRLADLVDRNDVPLPEKP 554
++ + V++A++T+ T WR+N VL+V++ + W+ + D+ + + LPEKP
Sbjct: 307 RQV---DMPEVYDAINTIQETAWRINKDVLAVVNNVVTWT-NCPVEDVPSIDKLALPEKP 362
Query: 555 ETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRG 612
E D E L+KW+ + ++ + R S+R +E LS A K Y+P+N+D+RG
Sbjct: 363 EDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDWRG 422
Query: 613 RAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAF 672
R Y + P N G+D+ +G+L FA+ +G G +WL +H AN GVDK+S E R+ +
Sbjct: 423 RVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRVKW 479
Query: 673 TENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDG 732
++ +I SA+ PL+ WW + + PF LA C +++ +F S +P+ DG
Sbjct: 480 VNDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAFDG 538
Query: 733 SCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDP-- 784
+C+GLQH++A+ RD +G AAVNL+ +KP D+Y +A +V LVI + +
Sbjct: 539 TCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISGTEDEMQTLE 598
Query: 785 -----------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 833
+ L A+ L V R + K++VMT YG G DQ+
Sbjct: 599 DKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQVFEDTVMPA 658
Query: 834 APMEEAELF---GASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ------- 882
+ +F +C + AK+ A+ + AA M WL AK+++SE +
Sbjct: 659 IDNGKGTMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEVKDKKSGEI 718
Query: 883 -----PVRWTTPLGLPVVQPYRKLGRHTV------KTSLQILTLQRETEKVMVKRQRTAF 931
PV WTTP G PV Y K + + LQ+ R+ +++ +Q +
Sbjct: 719 LKHAMPVHWTTPNGFPVWSEYCKQEQKVIDCVILGSMRLQLKLNMRDKKEIDTAKQASGI 778
Query: 932 PPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVELY-E 988
PNFVHS+D SH+ MT C K G+ +FA +HDS+ HA +M R +RE VE Y E
Sbjct: 779 APNFVHSMDASHLQMTVNKCFKVYGIHSFAMIHDSFGCHAGFASKMFRAVRETMVETYEE 838
Query: 989 MPIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFFN 1030
+ + + F+K + P LP +G+ +LRE+L S Y F+
Sbjct: 839 HDVIQEFYNQFEKQLHESQIEKMPALPRKGNLELREILKSLYTFS 883
>gi|383389390|gb|AFH14406.1| RNA polymerase [Vibrio phage VP3]
Length = 883
Score = 305 bits (781), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 235/824 (28%), Positives = 389/824 (47%), Gaps = 101/824 (12%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
YF + + A I + + +L + V + A IG IE E+R + ++ K
Sbjct: 104 YFAMIKPESAAFIIVKTTLNIL---AKEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 324 NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF----KPWGQD 379
+ + K + L K+ + KK + AV ++ + + + W +D
Sbjct: 161 FKERVKPN---------------LDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKD 205
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+ VG R IE+L + + + P A A V K T ++ + +
Sbjct: 206 VKFHVGIRAIEMLIEATGMVQLERKFKGIPDKDHEALHLAPEYVEKLT---NRAHALAGI 262
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTV 496
+P+ Y PM+V P +WTG G ++ P ++R G+K+ D
Sbjct: 263 SPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRALDRY 306
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG-RLADLVDRNDVPLPEKPE 555
++ + V++A++T+ T WR+N VL+V++ + + + D+ + + LPEKPE
Sbjct: 307 RQV---DMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPVEDVPSIDKLALPEKPE 363
Query: 556 TED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
D E L+KW+ + ++ + R S+R +E LS A K Y+P+N+D+RGR
Sbjct: 364 DIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDWRGR 423
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y + P N G+D+ +G+L FA+ +G G +WL +H AN GVDK+S E R+ +
Sbjct: 424 VYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRVKWV 480
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
++ +I SA+ PL+ WW + + PF LA C +++ +F S +P+ DG+
Sbjct: 481 NDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAFDGT 539
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDP--- 784
C+GLQH++A+ RD +G AAVNL+ +KP D+Y +A +V LVI + +
Sbjct: 540 CSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISGTEDEMQTLED 599
Query: 785 ----------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ L A+ L V R + K++VMT YG G DQ+
Sbjct: 600 KKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQVFEDTVMPAI 659
Query: 835 PMEEAELF---GASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------- 882
+ +F +C + AK+ A+ + AA M WL AK+++SE +
Sbjct: 660 DNGKGTMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEVKDKKSGEIL 719
Query: 883 ----PVRWTTPLGLPVVQPYRKLGRHTV------KTSLQILTLQRETEKVMVKRQRTAFP 932
PV WTTP G PV Y K + + LQ+ R+ +++ +Q +
Sbjct: 720 KHAMPVHWTTPNGFPVWSEYCKQEQKVIDCVILGSMRLQLKLNMRDKKEIDTAKQASGIA 779
Query: 933 PNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVELY-EM 989
PNFVHS+D SH+ MT C K G+ +FA +HDS+ HA +M R +RE VE Y E
Sbjct: 780 PNFVHSMDASHLQMTVNKCFKVYGIHSFAMIHDSFGCHAGFASKMFRAVRETMVETYEEH 839
Query: 990 PIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFFN 1030
+ + + F+K + P LP +G+ +LRE+L S Y F+
Sbjct: 840 DVIQEFYNQFEKQLHESQIEKMPALPRKGNLELREILKSLYTFS 883
>gi|323512181|gb|ADX87639.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2007_A]
Length = 883
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 237/828 (28%), Positives = 391/828 (47%), Gaps = 109/828 (13%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
YF + + A I + + +L + V + A IG IE E+R + ++ K
Sbjct: 104 YFAMIKPESAAFIIVKTTLNIL---AKEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 324 NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF----KPWGQD 379
+ + K + L K+ + KK + AV ++ + + + W +D
Sbjct: 161 FKERVKPN---------------LDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKD 205
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+ VG R IE+L + + + P A A V K T ++ + +
Sbjct: 206 VKFHVGIRAIEMLIEATGMVQLERKFKGIPDKDHEALHLAPEYVEKLT---NRAHALAGI 262
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTV 496
+P+ Y PM+V P +WTG G ++ P ++R G+K+ D
Sbjct: 263 SPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRALD-- 304
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG-RLADLVDRNDVPLPEKPE 555
R + + V++A++T+ T WR+N VL+V++ + + + D+ + + LPEKPE
Sbjct: 305 -RYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPVEDVPSIDKLALPEKPE 363
Query: 556 TED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
D E L+KW+ + ++ + R S+R +E LS A K Y+P+N+D+RGR
Sbjct: 364 DIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDWRGR 423
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y + P N G+D+ +G+L FA+ +G G +WL +H AN GVDK+S E R+ +
Sbjct: 424 VYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRVKWV 480
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
++ +I SA+ PL+ WW + + PF LA C +++ +F S +P+ DG+
Sbjct: 481 NDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAFDGT 539
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDP--- 784
C+GLQH++A+ RD +G AAVNL+ +KP D+Y +A +V LVI + +
Sbjct: 540 CSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISGTEDEMQTLED 599
Query: 785 ----------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ L A+ L V R + K++VMT YG G DQ+
Sbjct: 600 KKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQVFEDTVMPAI 659
Query: 835 PMEEAELF---GASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------- 882
+ +F +C + AK+ A+ + AA M WL AK+++SE +
Sbjct: 660 DNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEVKDKKSGEIL 719
Query: 883 ----PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQR 928
PV WTTP G PV Y K LG H + ++ I R+ +++ +Q
Sbjct: 720 KHAMPVHWTTPNGFPVWSEYCKQEQKRIDCVILGTHRMALTINI----RDKKEIDAAKQT 775
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVEL 986
+ PNFVHS+D SH+ MT C K G+ +FA +HDS+ HA +M R +RE VE
Sbjct: 776 SGIAPNFVHSMDASHLQMTVNKCFKVYGIHSFAMIHDSFGCHAGFASKMFRAVRETMVET 835
Query: 987 Y-EMPIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFFN 1030
Y E + + + F++ + P LP +G+ +LRE+L S Y F+
Sbjct: 836 YEEHDVIQEFYNQFEQQLHESQIEKMPVLPRKGNLELREILKSLYTFS 883
>gi|323512132|gb|ADX87591.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2008_A]
Length = 883
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 237/828 (28%), Positives = 391/828 (47%), Gaps = 109/828 (13%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
YF + + A I + + +L + V + A IG IE E+R + ++ K
Sbjct: 104 YFAMIKPESAAFIIVKTTLNIL---AKEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 324 NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF----KPWGQD 379
+ + K + L K+ + KK + AV ++ + + + W +D
Sbjct: 161 FKERVKPN---------------LDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKD 205
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+ VG R IE+L + + + P A A V K T ++ + +
Sbjct: 206 VKFHVGIRAIEMLIEATGMVQLERKFKGIPDKDHEALHLAPEYVEKLT---NRAHALAGI 262
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTV 496
+P+ Y PM+V P +WTG G ++ P ++R G+K+ D
Sbjct: 263 SPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRALD-- 304
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG-RLADLVDRNDVPLPEKPE 555
R + + V++A++T+ T WR+N VL+V++ + + + D+ + + LPEKPE
Sbjct: 305 -RYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPVEDVPSIDKLALPEKPE 363
Query: 556 TED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
D E L+KW+ + ++ + R S+R +E LS A K Y+P+N+D+RGR
Sbjct: 364 DIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDWRGR 423
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y + P N G+D+ +G+L FA+ +G G +WL +H AN GVDK+S E R+ +
Sbjct: 424 VYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRVKWV 480
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
++ +I SA+ PL+ WW + + PF LA C +++ +F S +P+ DG+
Sbjct: 481 NDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAFDGT 539
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDP--- 784
C+GLQH++A+ RD +G AAVNL+ +KP D+Y +A +V LVI + +
Sbjct: 540 CSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISGTEDEMQTLED 599
Query: 785 ----------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ L A+ L V R + K++VMT YG G DQ+
Sbjct: 600 KKTGEITERLVLGTRTLAAQWLEHGVTRSVTKRSVMTLAYGSKEYGFADQVFEDTVMPAI 659
Query: 835 PMEEAELF---GASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------- 882
+ +F +C + AK+ A+ + AA M WL AK+++SE +
Sbjct: 660 DNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEVKDKKSGEIL 719
Query: 883 ----PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQR 928
PV WTTP G PV Y K LG H + ++ I R+ +++ +Q
Sbjct: 720 KHAMPVHWTTPNGFPVWSEYCKQEQKRIDCVILGTHRMALTINI----RDKKEIDAAKQT 775
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVEL 986
+ PNFVHS+D SH+ MT C K G+ +FA +HDS+ HA +M R +RE VE
Sbjct: 776 SGIAPNFVHSMDASHLQMTVNKCFKVYGIHSFAMIHDSFGCHAGFASKMFRAVRETMVET 835
Query: 987 Y-EMPIFENLLDSFQKSFPKLV---FPPLPERGDFDLREVLGSPYFFN 1030
Y E + + + F++ + P LP +G+ +LRE+L S Y F+
Sbjct: 836 YEEHDVIQEFYNQFEQQLHESQIEKIPVLPRKGNLELREILKSLYTFS 883
>gi|281416168|ref|YP_003347903.1| RNA polymerase [Vibrio phage N4]
gi|237701475|gb|ACR16468.1| RNA polymerase [Vibrio phage N4]
Length = 883
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 237/828 (28%), Positives = 391/828 (47%), Gaps = 109/828 (13%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
YF + + A I + + +L + V + A IG IE E+R + ++ K
Sbjct: 104 YFAMIKPESAAFIIVKTTLNIL---AKEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 324 NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF----KPWGQD 379
+ + K + L K+ + KK + AV ++ + + + W +D
Sbjct: 161 FKERVKPN---------------LDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKD 205
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+ VG R IE+L + + + P A A V K T ++ + +
Sbjct: 206 VKFHVGIRAIEMLIEATGMVQLERKFKGIPDKDHEALHLAPEYVEKLT---NRAHALAGI 262
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTV 496
+P+ Y PM+V P +WTG G ++ P ++R G+K+ D
Sbjct: 263 SPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRALD-- 304
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG-RLADLVDRNDVPLPEKPE 555
R + + V++A++T+ T WR+N VL+V++ + + + D+ + + LPEKPE
Sbjct: 305 -RYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPVEDVPSIDKLALPEKPE 363
Query: 556 TED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
D E L+KW+ + ++ + R S+R +E LS A K Y+P+N+D+RGR
Sbjct: 364 DIDSNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDWRGR 423
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y + P N G+D+ +G+L FA+ +G G +WL +H AN GVDK+S E R+ +
Sbjct: 424 VYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRVKWV 480
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
++ +I SA+ PL+ WW + + PF LA C +++ +F S +P+ DG+
Sbjct: 481 NDNEANILASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAFDGT 539
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDP--- 784
C+GLQH++A+ RD +G AAVNL+ +KP D+Y +A +V LVI + +
Sbjct: 540 CSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISGTEDEMQTLED 599
Query: 785 ----------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ L A+ L V R + K++VMT YG G DQ+
Sbjct: 600 KKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQVFEDTVMPAI 659
Query: 835 PMEEAELF---GASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------- 882
+ +F +C + AK+ A+ + AA M WL AK+++SE +
Sbjct: 660 DNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEVKDKKSGEIL 719
Query: 883 ----PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQR 928
PV WTTP G PV Y K LG H + ++ I R+ +++ +Q
Sbjct: 720 KHAMPVHWTTPNGFPVWSEYCKQEQKRIDCVILGTHRMALTINI----RDKKEIDAAKQT 775
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVEL 986
+ PNFVHS+D SH+ MT C K G+ +FA +HDS+ HA +M R +RE VE
Sbjct: 776 SGIAPNFVHSMDASHLQMTVNKCFKVYGIHSFAMIHDSFGCHAGFASKMFRAVRETMVET 835
Query: 987 Y-EMPIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFFN 1030
Y E + + + F++ + P LP +G+ +LRE+L S Y F+
Sbjct: 836 YEEHDVIQEFYNQFEQQLHESQIEKMPVLPRKGNLELREILKSLYTFS 883
>gi|325171278|ref|YP_004251249.1| RNA polymerase [Vibrio phage ICP3]
gi|323511984|gb|ADX87446.1| RNA polymerase [Vibrio phage ICP3]
Length = 883
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 237/828 (28%), Positives = 391/828 (47%), Gaps = 109/828 (13%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
YF + + A I + + +L + V + A IG IE E+R + ++ K
Sbjct: 104 YFAMIKPESAAFIIVKTTLNIL---AKEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 324 NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF----KPWGQD 379
+ + K + L K+ + KK + AV ++ + + + W +D
Sbjct: 161 FKERVKPN---------------LDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKD 205
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+ VG R IE+L + + + P A A V K T ++ + +
Sbjct: 206 VKFHVGIRAIEMLIEATGMVQLERKFKGIPDKDHEALHLAPEYVEKLT---NRAHALAGI 262
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTV 496
+P+ Y PM+V P +WTG G ++ P ++R G+K+ D
Sbjct: 263 SPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRALD-- 304
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG-RLADLVDRNDVPLPEKPE 555
R + + V++A++T+ T WR+N VL+V++ + + + D+ + + LPEKPE
Sbjct: 305 -RYRQVDMPEVYDAINTIQETAWRINKDVLAVVNNVVTWANCPVEDVPSIDKLALPEKPE 363
Query: 556 TED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
D E L+KW+ + ++ + R S+R +E LS A K Y+P+N+D+RGR
Sbjct: 364 DIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDWRGR 423
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y + P N G+D+ +G+L FA+ +G G +WL +H AN GVDK+S E R+ +
Sbjct: 424 VYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRVKWV 480
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
++ +I SA+ PL+ WW + + PF LA C +++ +F S +P+ DG+
Sbjct: 481 NDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAFDGT 539
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDP--- 784
C+GLQH++A+ RD +G AAVNL+ +KP D+Y +A +V LVI + +
Sbjct: 540 CSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISGTEDEMQTLED 599
Query: 785 ----------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ L A+ L V R + K++VMT YG G DQ+
Sbjct: 600 KKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQVFEDTVMPAI 659
Query: 835 PMEEAELF---GASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------- 882
+ +F +C + AK+ A+ + AA M WL AK+++SE +
Sbjct: 660 DNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEVKDKKSGEIL 719
Query: 883 ----PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQR 928
PV WTTP G PV Y K LG H + ++ I R+ +++ +Q
Sbjct: 720 KHAMPVHWTTPNGFPVWSEYCKQEQKRIDCVILGTHRMALTINI----RDKKEIDAAKQT 775
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVEL 986
+ PNFVHS+D SH+ MT C K G+ +FA +HDS+ HA +M R +RE VE
Sbjct: 776 SGIAPNFVHSMDASHLQMTVNKCFKVYGIHSFAMIHDSFGCHAGFASKMFRAVRETMVET 835
Query: 987 Y-EMPIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFFN 1030
Y E + + + F++ + P LP +G+ +LRE+L S Y F+
Sbjct: 836 YEEHDVIQEFYNQFEQQLHESQIEKMPVLPRKGNLELREILKSLYTFS 883
>gi|385304972|gb|EIF48971.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 450
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 215/342 (62%), Gaps = 23/342 (6%)
Query: 677 LDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNG 736
+++I DS + P +G+++W++A+ P+Q LA + L +A+ P F+SH PVHQDG+CNG
Sbjct: 1 MNEIIDSVEHPFDGKKFWVEADHPWQFLATAMELKDAMELPDPTQFVSHQPVHQDGTCNG 60
Query: 737 LQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLL 796
LQHYAALG D GA VNLV +KP+D+Y+ ++ V ++ DA++ PDA R + +
Sbjct: 61 LQHYAALGGDXEGAEHVNLVPNDKPSDIYTRVSKIVQQMVDEDAEKG---VPDARRTQNI 117
Query: 797 LSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTAL 856
++ RKLVKQTVMTSVYGVTY+GAR QI +RLKE +E L S Y L A+
Sbjct: 118 IT---RKLVKQTVMTSVYGVTYVGARAQIVKRLKE--IDFDEDHLSDCSAYLTDKVLKAI 172
Query: 857 GEMFQAARGIMSWLGECAKIIASENQ-------------PVRWTTPLGLPVVQPYRKLGR 903
++F A I WL AK I+ + V WT+PLGLPVVQPYRK
Sbjct: 173 RKLFDGAHAIQDWLALAAKRISKSIRLDIDVNDXTEYISSVIWTSPLGLPVVQPYRKFKS 232
Query: 904 HTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGV 961
+ T+LQ + + E +KV ++Q FPPNFVHSLD +HM+M+ CR+ GL+F+ V
Sbjct: 233 RQIHTNLQTMVINDPYEIKKVDARKQAQGFPPNFVHSLDATHMLMSVNRCREHGLSFSSV 292
Query: 962 HDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
HDSYWTHA ++ MN+ILRE+FV+L++ + L F K +
Sbjct: 293 HDSYWTHAANITLMNKILREEFVKLHKNDLVSKLRSEFMKRY 334
>gi|344299821|gb|EGW30174.1| hypothetical protein SPAPADRAFT_57614 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1073
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 210/649 (32%), Positives = 311/649 (47%), Gaps = 87/649 (13%)
Query: 430 GSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
GS KY VI+ +P++ L + PM+VPP WT +G + V
Sbjct: 350 GSYKYPVIKIHPILENDLSNCRGK--VSRFPMVVPPKPWTNLFEGGYLVHKECVFMARFD 407
Query: 490 KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV 548
K + K+ L+ VF L+ LG+ W +N +L +L+R + +
Sbjct: 408 KTYLNYFKQVSYDGHLDSVFMTLNKLGSLAWAINPDMLKILNR----AANMPQGFLKIPR 463
Query: 549 PLPEK-PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM-KDEEGFYYPH 606
P+ +K P+ +D+ +K+ R + L +A K+ E Y P+
Sbjct: 464 PISDKVPKFKDKFAQQKY-----------ISSKGARITFNMLLDMANGFSKNGEMLYTPY 512
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
+DFRGR YP L+H+ SD R + F + LG G +WLK HL++++ G
Sbjct: 513 QLDFRGRVYP-SSNLSHILSDEFRCLFMFWHSKALGNDGFNWLKYHLSSMF--GNSGFHM 569
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL----RSSSPETF 722
E + F + H DI DSA P +G++WWLK++ P+Q L+ C+ LT+ + + E F
Sbjct: 570 EQAIGFCDKHKQDIIDSAKYPFDGKQWWLKSKTPYQTLSACMELTKVWEFEEQGGNIEEF 629
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
+ PVHQDGSCNGLQHYAAL RD G AVNL+ K D+Y +A V +Q A
Sbjct: 630 RTRFPVHQDGSCNGLQHYAALTRDERGGKAVNLLDEPKKQDIYMEVANIVESKLQ--ALI 687
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE----------- 831
D + L AKL L + RKLVK TVMT+VYGVT IGA Q++ R+K+
Sbjct: 688 DSPDETERLYAKLGLIVLSRKLVKTTVMTTVYGVTTIGAAGQVRNRIKDFVDDCNQNPQM 747
Query: 832 RGAPMEEA------ELFGASCYAAKVTLTALGEMFQAARGIMSWLG-ECAKIIASEN--- 881
+G EEA E F + A V L ++ +F A + WL ++++S N
Sbjct: 748 KGTISEEALEKIQSESFKLGMFLANVILGSISSLFAPATAVQQWLRVNIKRVLSSFNSKS 807
Query: 882 ----------------------QPVRWTTPLGLPVVQPYRKLGRH----TVKTSLQILTL 915
+P+ W P G PV+Q Y K + +V +S+
Sbjct: 808 VMYIKNMKPELFEKVFTQPQSLRPIIWKVPSGFPVIQYYVKSPNNQNFQSVLSSVVASQG 867
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+R + + PN++HSLD HMM T GL+FA VHDS+WTH CDV M
Sbjct: 868 KRTLSPMSKYKSVNGIAPNYIHSLDAVHMMWTCNNMYNEGLSFAAVHDSFWTHPCDVKRM 927
Query: 976 NRILREKFVELYE----MPIFENLLDSFQKSFPKLV------FPPLPER 1014
+ ILR++FV+L+ M + +L+ + S+ +LV FP L +R
Sbjct: 928 STILRQEFVKLHTPDLLMSLRNDLMQQVKGSY-QLVQFRSCDFPELAKR 975
>gi|89148150|gb|ABD62819.1| mitochondrial single-subunit RNA polymerase [Planoprotostelium sp.
ATCC 50597]
Length = 297
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/303 (51%), Positives = 197/303 (65%), Gaps = 12/303 (3%)
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALG D +GA VNLV + P DVYSG+A V + DA +
Sbjct: 1 CNGLQHYAALGGDEIGAKKVNLVPSDSPQDVYSGVATVVAKRVHDDALAGHEL------G 54
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM-EEAELFGASCYAAKVT 852
KLL +VDRK+VKQTVMTSVYGVTYIGAR QI L ++ ++ +L+ AS Y T
Sbjct: 55 KLLDGKVDRKVVKQTVMTSVYGVTYIGARLQIHNALSDKEIDWRDDDQLYHASAYIINHT 114
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQI 912
AL +MF AR IM WL +CA+IIA PV W TPLGLP+VQPY K TVKT +Q
Sbjct: 115 FEALNQMFLGARNIMKWLADCARIIAKNKDPVAWVTPLGLPIVQPYVKNQNFTVKTVVQH 174
Query: 913 LTLQ--RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHAC 970
+ L R+ V +QR+AFPPN+VHSLD HMM+TA+ C+K + +A VHDSYWTHAC
Sbjct: 175 VLLHDIRKDLPVNTIKQRSAFPPNYVHSLDSCHMMLTAIECKKHNIAYASVHDSYWTHAC 234
Query: 971 DVDEMNRILREKFVELYEMPIFENLLDSFQKSFPK---LVFPPLPERGDFDLREVLGSPY 1027
VD M++ILR++FVEL+ P+ L + F K + K + FPP+PERG DL+ V S Y
Sbjct: 235 TVDHMSKILRDQFVELHSQPLLHRLREWFIKRYGKDGRVEFPPVPERGPLDLQVVKQSKY 294
Query: 1028 FFN 1030
FF+
Sbjct: 295 FFH 297
>gi|189427200|ref|YP_001949750.1| gp1 [Salmonella phage phiSG-JL2]
gi|189085853|gb|ACD75668.1| gp1 [Salmonella phage phiSG-JL2]
Length = 884
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 261/927 (28%), Positives = 427/927 (46%), Gaps = 142/927 (15%)
Query: 172 GSGRNRRRVARGMGS---GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLP 228
GS R ++A S G+ R LKM ++ + +A E A N + L LA LP
Sbjct: 30 GSALAREQLALEHESYELGERRFLKM--LERQAKAGEIADNAAAKPL-------LATLLP 80
Query: 229 YMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG 288
+ + + W E + + + VAYAP L + A IT+ ++ L +
Sbjct: 81 KLTARIVEWLE---------EYASKKGRKPVAYAP-LQLLKPEASAFITLKVILASLTST 130
Query: 289 GEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLR 348
+ AA ++G AIE E R + + + K+ K+ E E+L
Sbjct: 131 N---MTTIQAAAGMLGKAIEDEARFGR-IRDLEAKHFKKHVE--------------EQLN 172
Query: 349 KKVTDLIKKQKLPAVR-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQ-TAYIQSPA 402
K+ + KK + V R + G + + W ++ VG R+IE+L + T ++
Sbjct: 173 KRHGQVYKKAFMQVVEADMIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQR 232
Query: 403 DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIE-CNPLVLKGLERTARHMVIPYMPM 461
+A D AL+ + +K+ G + +P+ + P
Sbjct: 233 HNAGNAGSD-----HEALQLAQEYVDVLAKRAGALAGISPM---------------FQPC 272
Query: 462 LVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+VPP W G ++ P ++RTH K + R + V++A++ NT
Sbjct: 273 VVPPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNIAQNTA 328
Query: 519 WRVNNRVLSVLDRI--W-SCGGRLADLVDRNDVPLPEKPETED--EAQLRKWQWKVRNVK 573
W++N +VL+V++ I W +C +AD+ LP KP+ D EA L++W+ V
Sbjct: 329 WKINKKVLAVVNEIVNWKNC--PVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGVY 386
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
+ ++ R S+R +E L A K ++ ++P+N+D+RGR Y + P N G+D+ +G+L
Sbjct: 387 RLDKARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLL 445
Query: 634 EFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
A+G+ +G+ G +WLKIH AN GVDK+ R+AF E H+DDI A P+ W
Sbjct: 446 TLAKGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPI-NNTW 502
Query: 694 WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
W + + PF LA C ++ +P+ DGSC+G+QH++A+ RD +G AV
Sbjct: 503 WAEQDSPFCFLAFCFEYAGVAHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 754 NLVAREKPADVYSGIAARVLVIIQRDA------------QRDPAVFPDALR-------AK 794
NL+ E D+Y +A +V I+++DA +D + L+ +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 795 LLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAK 850
L V R + K++VMT YG G R Q+ + + +F A+ Y AK
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAK 680
Query: 851 VTLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPY 898
+ A+ AA M+WL AK++A+E + V WTTP G PV Q Y
Sbjct: 681 LIWDAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEY 740
Query: 899 RK----------LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
RK LG+ ++ ++ L + + +Q + PNFVHS DGSH+ MT
Sbjct: 741 RKPLQKRLDMIFLGQFRLQPTINTL----KDSGIDAHKQESGIAPNFVHSQDGSHLRMTV 796
Query: 949 V-ACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPK 1005
V A K G+ +FA +HDS+ T D ++ + +RE V YE + + D F +
Sbjct: 797 VYAHEKYGIESFALIHDSFGTIPADAGKLFKAVRETMVLTYENNDVLADFYDQFADQLHE 856
Query: 1006 LVF---PPLPERGDFDLREVLGSPYFF 1029
PPLP++G +L+++L S + F
Sbjct: 857 TQLDKMPPLPKKGKLNLQDILKSDFAF 883
>gi|9633997|ref|NP_052071.1| RNA polymerase [Yersinia phage phiYeO3-12]
gi|6598988|emb|CAB63592.1| RNA polymerase [Yersinia phage phiYeO3-12]
Length = 884
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 262/929 (28%), Positives = 426/929 (45%), Gaps = 146/929 (15%)
Query: 172 GSGRNRRRVARGMGS---GKYRMLKM--RQVKIETEAWEKAANEYRELLMDMCEQKLAPN 226
GS R ++A S G+ R LKM RQ K A E A N + L LA
Sbjct: 30 GSALAREQLALEHESYELGERRFLKMLERQAK----AGEIADNAAAKPL-------LATL 78
Query: 227 LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLM 286
LP + + + W E + + + VAYAP L + A IT+ ++ L
Sbjct: 79 LPKLTTRIVEWLE---------EYATKKGRKPVAYAP-LQSLKPEASAFITLKVILASLT 128
Query: 287 TGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEK 346
+ + AA ++G AIE E R + + + K+ K+ E E+
Sbjct: 129 STN---MTTIQAAAGMLGKAIEDEARFGR-IRDLEAKHFKKHVE--------------EQ 170
Query: 347 LRKKVTDLIKKQKLPAVR-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQ-TAYIQS 400
L K+ + KK + V R + G + + W ++ VG R+IE+L + T ++
Sbjct: 171 LNKRHGQVYKKAFMQVVEADMIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVEL 230
Query: 401 PADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIE-CNPLVLKGLERTARHMVIPYM 459
+A D AL+ + +K+ G + +P+ +
Sbjct: 231 QRHNAGNAGSD-----HEALQLAQEYVDVLAKRAGALAGISPM---------------FQ 270
Query: 460 PMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGN 516
P +VPP W G ++ P ++RTH K + R + V++A++ N
Sbjct: 271 PCVVPPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNIAQN 326
Query: 517 TKWRVNNRVLSVLDRI--W-SCGGRLADLVDRNDVPLPEKPETED--EAQLRKWQWKVRN 571
T W++N +VL+V++ I W +C +AD+ LP KP+ D EA L++W+
Sbjct: 327 TAWKINKKVLAVVNEIVNWKNC--PVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAG 384
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+ + ++ R S+R +E L A K ++ ++P+N+D+RGR Y + P N G+D+ +G
Sbjct: 385 IYRLDKARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKG 443
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
+L A+G+ +G+ G +WLKIH AN GVDK+ R+AF E H+DDI A P+
Sbjct: 444 LLTLAKGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPIN-N 500
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
WW + + PF LA C ++ +P+ DGSC+G+QH++A+ RD +G
Sbjct: 501 TWWAEQDSPFCFLAFCFEYAGVAHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGR 558
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDA------------QRDPAVFPDALR------- 792
AVNL+ E D+Y +A +V I+++DA +D + L+
Sbjct: 559 AVNLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLA 618
Query: 793 AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYA 848
+ L V R + K++VMT YG G R Q+ + + +F A+ Y
Sbjct: 619 QQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYM 678
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQ 896
AK+ A+ AA M+WL AK++A+E + V WTTP G PV Q
Sbjct: 679 AKLIWDAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQ 738
Query: 897 PYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
YRK LG+ ++ ++ L + + +Q + PNFVHS DGSH+ M
Sbjct: 739 EYRKPLQKRLDMIFLGQFRLQPTINTL----KDSGIDAHKQESGIAPNFVHSQDGSHLRM 794
Query: 947 TAV-ACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSF 1003
T V A G+ +FA +HDS+ T D ++ + +RE V YE + + D F
Sbjct: 795 TVVYAHENYGIESFALIHDSFGTIPADAGKLFKAVRETMVITYENNDVLADFYDQFADQL 854
Query: 1004 PKLVF---PPLPERGDFDLREVLGSPYFF 1029
+ PPLP++G+ +L+++L S + F
Sbjct: 855 HETQLDKMPPLPKKGNLNLQDILKSDFAF 883
>gi|147779650|emb|CAN71736.1| hypothetical protein VITISV_011556 [Vitis vinifera]
Length = 168
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 140/167 (83%), Positives = 148/167 (88%), Gaps = 9/167 (5%)
Query: 873 CAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKV---------M 923
+IIASENQPVRWTTPLGLPVVQPYRKLGRH +KTSLQ+LTLQRETE V M
Sbjct: 2 VVQIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETVISTYLIFLIM 61
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKF 983
VKRQRTAFPPNFVHSLDGSHMMMTA+AC+KAGL FAGVHDSYWTHACDVDEMNRILREKF
Sbjct: 62 VKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKF 121
Query: 984 VELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
V+LYE PI ENLL+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 122 VQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 168
>gi|17570792|ref|NP_523301.1| RNA polymerase [Enterobacteria phage T3]
gi|133452|sp|P07659.1|RPOL_BPT3 RecName: Full=DNA-directed RNA polymerase
gi|15562|emb|CAA26719.1| unnamed protein product [Enterobacteria phage T3]
gi|15683|emb|CAA35121.1| 1 [Enterobacteria phage T3]
gi|17384276|emb|CAC86264.1| RNA polymerase [Enterobacteria phage T3]
Length = 884
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 258/914 (28%), Positives = 420/914 (45%), Gaps = 149/914 (16%)
Query: 187 GKYRMLKM--RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDA 244
G+ R LKM RQ K A E A N + L LA LP + + + W E
Sbjct: 48 GERRFLKMLERQAK----AGEIADNAAAKPL-------LATLLPKLTTRIVEWLE----- 91
Query: 245 IAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
+ + + AYAP L + A IT+ ++ L + + AA ++G
Sbjct: 92 ----EYASKKGRKPSAYAP-LQLLKPEASAFITLKVILASLTSTN---MTTIQAAAGMLG 143
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR 364
AIE E R + + + K+ K+ E E+L K+ + KK + V
Sbjct: 144 KAIEDEARFGR-IRDLEAKHFKKHVE--------------EQLNKRHGQVYKKAFMQVVE 188
Query: 365 -----RIVKGQDDFKPWGQDARAKVGSRVIELLTQ-TAYIQSPADQLADAPPDIFPAFTH 418
R + G + + W ++ VG R+IE+L + T ++ +A D
Sbjct: 189 ADMIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHNAGNAGSD-----HE 243
Query: 419 ALRTVSKETKGGSKKYGVIE-CNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHF 477
AL+ + +K+ G + +P+ + P +VPP W G ++
Sbjct: 244 ALQLAQEYVDVLAKRAGALAGISPM---------------FQPCVVPPKPWVAITGGGYW 288
Query: 478 F---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI-- 532
P ++RTH K + R + V++A++ NT W++N +VL+V++ I
Sbjct: 289 ANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNLAQNTAWKINKKVLAVVNEIVN 344
Query: 533 W-SCGGRLADLVDRNDVPLPEKPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
W +C +AD+ LP KP+ D EA L++W+ + + ++ R S+R +E
Sbjct: 345 WKNC--PVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLDKARVSRRISLEFM 402
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L A K ++ ++P+N+D+RGR Y + P N G+D+ +G+L A+G+ +G+ G +WL
Sbjct: 403 LEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGEEGFYWL 461
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIH AN GVDK+ R+AF E H+DDI A P+ WW + + PF LA C
Sbjct: 462 KIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPIN-NTWWAEQDSPFCFLAFCFE 518
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y +A
Sbjct: 519 YAGVTHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVA 576
Query: 770 ARVLVIIQRDA------------QRDPAVFPDALR-------AKLLLSQVDRKLVKQTVM 810
+V I+++DA +D + L+ + L V R + K++VM
Sbjct: 577 QKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQWLAYGVTRSVTKRSVM 636
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAARGI 866
T YG G R Q+ + + +F A+ Y AK+ A+ AA
Sbjct: 637 TLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWDAVSVTVVAAVEA 696
Query: 867 MSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRK----------LGRH 904
M+WL AK++A+E + V WTTP G PV Q YRK LG+
Sbjct: 697 MNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEYRKPLQKRLDMIFLGQF 756
Query: 905 TVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TFAGVH 962
++ ++ L + + +Q + PNFVHS DGSH+ MT V A K G+ +FA +H
Sbjct: 757 RLQPTINTL----KDSGIDAHKQESGIAPNFVHSQDGSHLRMTVVYAHEKYGIESFALIH 812
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV-------FPPLPERG 1015
DS+ T D ++ + +RE V YE ++L F F + PPLP++G
Sbjct: 813 DSFGTIPADAGKLFKAVRETMVITYEN---NDVLADFYSQFADQLHETQLDKMPPLPKKG 869
Query: 1016 DFDLREVLGSPYFF 1029
+ +L+++L S + F
Sbjct: 870 NLNLQDILKSDFAF 883
>gi|323512036|gb|ADX87497.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_B]
Length = 883
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 236/828 (28%), Positives = 391/828 (47%), Gaps = 109/828 (13%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
YF + + A I + + +L + V + A IG IE E+R + ++ K
Sbjct: 104 YFAMIKPESAAFIIVKTTLNIL---AKEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 324 NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF----KPWGQD 379
+ + K + L K+ + KK + AV ++ + + + W +D
Sbjct: 161 FKERVKPN---------------LDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKD 205
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+ VG R IE+L + + + P A A V K T ++ + +
Sbjct: 206 VKFHVGIRAIEMLIEATGMVQLERKFKGIPDKDHEALHLAPEYVEKLT---NRAHALAGI 262
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTV 496
+P+ Y PM+V P +WTG G ++ P ++R G+K+ D
Sbjct: 263 SPM---------------YQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRALDRY 306
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG-RLADLVDRNDVPLPEKPE 555
++ + V++A++T+ T WR+N VL+V++ + + + D+ + + LPEKPE
Sbjct: 307 RQV---GMPEVYDAINTIQETAWRINKDVLAVVNNVVTWVNCPVEDVPSIDKLALPEKPE 363
Query: 556 TED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
D E L+KW+ + ++ + R S+R +E LS A K Y+P+N+D+RGR
Sbjct: 364 DIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDWRGR 423
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y + P N G+D+ +G+L FA+ +G G +WL +H AN GVDK+S E R+ +
Sbjct: 424 VYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRVKWV 480
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
++ +I SA+ PL+ WW + + PF LA C +++ +F S +P+ DG+
Sbjct: 481 NDNEANIIASAEAPLD-FTWWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAFDGT 539
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDP--- 784
C+GLQH++A+ RD +G AAVNL+ +KP D+Y +A +V LVI + +
Sbjct: 540 CSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISGTEDEMQTLED 599
Query: 785 ----------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ L A+ L V R + K++VMT YG G DQ+
Sbjct: 600 KKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQVFEDTVMPAI 659
Query: 835 PMEEAELF---GASC-YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-------- 882
+ +F +C + AK+ A+ + AA M WL AK+++SE +
Sbjct: 660 DNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEVKDKKSGEIL 719
Query: 883 ----PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQR 928
PV WTTP G PV Y K LG H + ++ I R+ +++ +Q
Sbjct: 720 KHAMPVHWTTPNGFPVWSEYYKQEQKRIDCVILGTHRMALTINI----RDKKEIDAAKQT 775
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVEL 986
+ PNFVHS+D SH+ MT C K G+ +FA +HDS+ HA +M R +RE VE
Sbjct: 776 SGIAPNFVHSMDASHLQMTVNKCFKVYGIHSFAMIHDSFGCHAGFASKMFRAVRETMVET 835
Query: 987 Y-EMPIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFFN 1030
Y E + + + F++ + P LP +G+ +LRE+L S Y F+
Sbjct: 836 YEEHDVIQEFYNQFEQQLHESQIEKMPVLPRKGNLELREILKSLYTFS 883
>gi|325272855|ref|ZP_08139190.1| DNA-directed RNA polymerase [Pseudomonas sp. TJI-51]
gi|324102004|gb|EGB99515.1| DNA-directed RNA polymerase [Pseudomonas sp. TJI-51]
Length = 848
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 225/815 (27%), Positives = 373/815 (45%), Gaps = 115/815 (14%)
Query: 270 ADMMAVITM-HKLMGLLMTGGEHGRARVVQAACI-IGDAIEQEVRIHKFLEKTKKKNETK 327
AD++A +T+ H L G+ + R +Q + I ++E E+R+ +K +KK
Sbjct: 93 ADVLAYLTLKHTLAGI-------SQPRTLQHVSVSIAQSVEDEMRLSGIRDKERKKY--- 142
Query: 328 NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSR 387
D+ + +N +++ + K R+ D + W + R VG++
Sbjct: 143 ---DQLVERANKRSSQ-------------RHKHIYATRVASALDTWSNWSNNDRIHVGTK 186
Query: 388 VIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL 447
++ELL + L ++ +G K ++ L+ +
Sbjct: 187 LLELLMNSV----------------------GLIQIATNGEGTEKALKYVKPLESTLEWI 224
Query: 448 ER--TARHMVIP-YMPMLVPPVKWTGYDKGAHF---FLPSYVMRTHGAKQQRDTVKRTPK 501
R M+ P Y PM+VPP WT G + P +++T + R ++
Sbjct: 225 ARKNNVTAMLRPVYEPMVVPPRNWTSPTDGGYLSSSLKPLRMVKT----RNRAYLEELGN 280
Query: 502 KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQ 561
+ V+ AL+ + T W++N +L ++ +W G L R +P P KP D +
Sbjct: 281 VDMPMVYTALNAIQATAWQINTPILKIMTTLWEQGSTWCGLPPREGIPQPAKPFDIDTNE 340
Query: 562 LRKWQWK--VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
+ + W+ V +N E R ++ + L +A + Y+P+ +DFRGR Y + P
Sbjct: 341 VARAAWRKAAFKVHSDNLEIQGARINVSMSLDIANRYSPFRKIYFPYQLDFRGRIYAV-P 399
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDD 679
+LN G+D +G+L FA G+ LG+ G WL IH AN+ G DK S E R+ + +H +
Sbjct: 400 HLNPQGADHTKGLLRFAYGKPLGEHGAKWLAIHGANV--AGYDKASLEDRVKWVHDHQAE 457
Query: 680 IFDSADKPLEGRRW----WLKAED-PFQCLAVCINLTEALRSSSPETFISHIPVHQDGSC 734
I A P + R W +A D P+Q LA C+ + F+S +P+ DGSC
Sbjct: 458 ILAIAADPFQARGWADHVGAQAIDKPWQFLAFCLEWKGYCEHG--DRFVSKLPIAMDGSC 515
Query: 735 NGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR-- 792
+G+QH++A+ RD +G AAVNLV + PADVY +A +V+ DA+ D L+
Sbjct: 516 SGIQHFSAMLRDEVGGAAVNLVPSDLPADVYGLVAKKVIERAIHDAKHGT---EDVLKHD 572
Query: 793 ----------AKLLLSQ-----VDRKLVKQTVMTSVYGVTYIGARDQIKRRL----KERG 833
K L Q ++RK+ K++VMT YG G +DQ+ + +++
Sbjct: 573 ADGKAYVQEGTKNLAQQWTRFGINRKVTKRSVMTLAYGSKEYGFKDQVMEDILDPARKKA 632
Query: 834 APME----------EAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP 883
E + F A+ + AK A+ ++ A M WL + A + A E P
Sbjct: 633 TDAEGNVDARHFPFTGDGFRAAGWMAKAIWEAVNQVLVKAGEAMKWLQDAATLAAKEELP 692
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQ----ILTLQRETEKVMVKRQRTAFPPNFVHSL 939
V WTT +G PV+Q Y + VKT++ L + E + + ++Q PNFVHS
Sbjct: 693 VCWTTAVGFPVMQAYNSVVARRVKTAINGARVRLLMNEEQDSLDKRKQSQGISPNFVHSC 752
Query: 940 DGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLLD 997
D +H+M+T V ++GL +FA +HDS+ T A + + +R+ F+E+Y E + E D
Sbjct: 753 DAAHLMLTVVRGVESGLKSFAMIHDSFGTTAGETELFFMTVRKAFIEMYEETAVLERFRD 812
Query: 998 SFQKSF---PKLVFPPLPERGDFDLREVLGSPYFF 1029
+ LP+RG L V S + F
Sbjct: 813 ELAAQLSDKARAKLAELPKRGSLSLAAVAESRFCF 847
>gi|26988990|ref|NP_744415.1| DNA-directed RNA polymerase, bacteriophage and mitochondrial type
[Pseudomonas putida KT2440]
gi|24983810|gb|AAN67879.1|AE016420_1 DNA-directed RNA polymerase, bacteriophage and mitochondrial type
[Pseudomonas putida KT2440]
Length = 852
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 227/815 (27%), Positives = 375/815 (46%), Gaps = 115/815 (14%)
Query: 270 ADMMAVITM-HKLMGLLMTGGEHGRARVVQAACI-IGDAIEQEVRIHKFLEKTKKKNETK 327
AD++A +T+ H L G+ + R +Q + I ++E E+R+ +K +KK
Sbjct: 97 ADVLAYLTLKHTLAGI-------SQPRTLQHVSVSIAQSVEDEMRLSGIRDKERKKY--- 146
Query: 328 NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSR 387
D+ + +N +++ + K R+ D + W + R VG++
Sbjct: 147 ---DQLVERANKRSSQ-------------RHKHIYATRVASALDTWSNWSNNDRIHVGTK 190
Query: 388 VIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL 447
++ELL + L ++ +G K ++ L+ +
Sbjct: 191 LLELLMNSV----------------------GLIHIATNGEGTEKALKYVKPLESTLEWI 228
Query: 448 ER--TARHMVIP-YMPMLVPPVKWTGYDKGAHF---FLPSYVMRTHGAKQQRDTVKRTPK 501
R M+ P Y PM+VPP WT G + P +++T + R ++
Sbjct: 229 ARKNNVTAMLRPVYEPMVVPPRNWTSPTDGGYLSSSLKPLRMVKT----RNRAYLEELGN 284
Query: 502 KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQ 561
+ V+ AL+ + T W++N +L+++ +W G L R +P P KP D +
Sbjct: 285 VDMPMVYTALNAIQATAWQINTPILNIMTTLWEQGATWCGLPPREGIPQPVKPFDIDTNE 344
Query: 562 LRKWQWKVRNVK--KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
+ + W+ K +N E R ++ + L +A + Y+P+ +DFRGR Y + P
Sbjct: 345 VARAAWRKAAFKAHSDNLEIQGARINVSMSLDIANRYSPFRKIYFPYQLDFRGRIYAV-P 403
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDD 679
+LN G+D +G+L FA G+ LG+ G WL IH AN+ G DK S E R+ + +H +
Sbjct: 404 HLNPQGADHTKGLLRFAYGKPLGEHGAKWLAIHGANV--AGYDKASLEDRVKWVHDHQAE 461
Query: 680 IFDSADKPLEGRRW----WLKAED-PFQCLAVCINLTEALRSSSPETFISHIPVHQDGSC 734
I A P + R W +A D P+Q LA C+ + F+S +P+ DGSC
Sbjct: 462 ILAIAADPFQARGWADHVGAQAIDKPWQFLAFCLEWKGYCEHG--DRFVSKLPIAMDGSC 519
Query: 735 NGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR-- 792
+G+QH++A+ RD +G AAVNLV + PADVY +A +V+ DA+ D L+
Sbjct: 520 SGIQHFSAMLRDEVGGAAVNLVPSDLPADVYGLVAKKVIERAIHDAKHGT---EDVLKHD 576
Query: 793 ----------AKLLLSQ-----VDRKLVKQTVMTSVYGVTYIGARDQIKRRL----KERG 833
K L Q ++RK+ K++VMT YG G +DQ+ + +++
Sbjct: 577 ADGKAYVQEGTKNLAQQWTRFGINRKVTKRSVMTLAYGSKEYGFKDQVMEDILDPARKKA 636
Query: 834 APME----------EAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP 883
E + F A+ + AK A+ ++ A M WL + A + A E P
Sbjct: 637 TDAEGNVDARHFPFTGDGFRAAGWMAKAIWEAVNQVLVKAGEAMKWLQDAATLAAKEELP 696
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSL---QILTLQRETEKVMVKR-QRTAFPPNFVHSL 939
V WTT +G PV+Q Y + VKT++ ++ L E + + KR Q PNFVHS
Sbjct: 697 VCWTTAVGFPVMQAYNSVVARRVKTAINGARVRLLMNEEQDALDKRKQSQGISPNFVHSC 756
Query: 940 DGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLLD 997
D +H+M+T V ++GL +FA +HDS+ T A + + +R+ F+E+Y E + E D
Sbjct: 757 DAAHLMLTVVRGVESGLKSFAMIHDSFGTTAGETELFFMTVRKAFIEMYEETAVLERFRD 816
Query: 998 SFQKSF---PKLVFPPLPERGDFDLREVLGSPYFF 1029
+ LP+RG L V S + F
Sbjct: 817 ELAAQLSDKARAKLAELPKRGSLSLAAVAESRFCF 851
>gi|448537583|ref|XP_003871363.1| hypothetical protein CORT_0H01220 [Candida orthopsilosis Co 90-125]
gi|380355720|emb|CCG25238.1| hypothetical protein CORT_0H01220 [Candida orthopsilosis]
Length = 1236
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 203/646 (31%), Positives = 315/646 (48%), Gaps = 109/646 (16%)
Query: 431 SKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAK 490
+K VI+ N ++ + L + P+L PP W G +KGA +L G
Sbjct: 487 AKSKSVIKINTVLTQSLTSIPIGSDSHHFPLLCPPEPWLGVNKGA--YLERSTPFLSGFD 544
Query: 491 QQRDTVKRTPKKQ--LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC-GGRLADLVDRND 547
Q + T+ + Q L+ F+ LD +G T W +N +LSV +++ G L D
Sbjct: 545 QLQQTILQNAHLQGKLDSAFKCLDQMGKTAWSINPDLLSVFNKVMEIPQGFL-------D 597
Query: 548 VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM-KDEEGFYYPH 606
+P P+ E ++ K+E + R + E +A ++ + Y+ +
Sbjct: 598 IP-PKVIEVSSKS------------KQEIIDIKGLRSNFETVKMLANAFGRNGDMLYHCY 644
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
DFRGR YP+ P L H G DL R + +F G+ LG +G +W+K L +++ GG D
Sbjct: 645 VFDFRGRVYPLSP-LTHYGGDLTRSLFQFWHGQPLGANGFYWIKYQLMSVFGGGTD---- 699
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-----SSSPET 721
F +N ++ I DSA PL R WW+KA++PF L+VCI + + L+ S E
Sbjct: 700 -CEQFFNQNRVE-IIDSAVDPLHNR-WWMKADEPFSALSVCIEIRKILQFLEQGKGSIEE 756
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
++ +P+HQDGSCNGLQHYAAL D LG AVNLV + DVYS + V I D +
Sbjct: 757 YVCRLPIHQDGSCNGLQHYAALAADGLGGKAVNLVPMDTKQDVYSTVRDIVECKIIDDVE 816
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK----------- 830
+ + D A+ +L +DRKL+K+ VMT+VYGVT GA QI ++
Sbjct: 817 -NKLLEKDRDHAEFMLKILDRKLIKRPVMTTVYGVTLAGASRQILENIEKIVSDHDENPS 875
Query: 831 ERG----APMEEAELFG--ASCYAAKVTLTALGEMFQAARGIMSWLGECA-KIIASEN-- 881
+RG + +++ F ++ Y A+ L+++ ++F A+ + WL + +I+ S N
Sbjct: 876 KRGLYDDSTIDKLRQFNLKSTIYLARKILSSIDDLFYNAKQMERWLVDNTRRILTSHNVK 935
Query: 882 ----------------------------------QPVRWTTPLGLPVVQPYRKLGR-HTV 906
P+ W + G PV+Q YRK + H+V
Sbjct: 936 TLNYLQSKTFASASLTSTSATKALSNWYKTPISYTPISWISASGFPVIQTYRKKSQPHSV 995
Query: 907 KTSLQILTLQRETEKVMV---KRQRTAFPPNFVHSLDGSHMMMTAVACR----------K 953
+L + +QR + K ++ A PNF+HSLD SHM MT AC
Sbjct: 996 TGALGSI-MQRASSKYAPMDRRKHELAIAPNFIHSLDASHMFMTCDACAGKSENTSVDGP 1054
Query: 954 AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF 999
GLTFA +HDSYWTH +V+++++ILR FV+L+ ++ + F
Sbjct: 1055 TGLTFASIHDSYWTHPNEVEKLSQILRRTFVKLHSFDYMNHVRNDF 1100
>gi|414090089|ref|YP_006990207.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
gi|409995511|gb|AFV51444.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
Length = 883
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 250/911 (27%), Positives = 408/911 (44%), Gaps = 139/911 (15%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L +A LP M WFE +
Sbjct: 46 MGEARFRKIFERQLK----AGEVADNAAAKPL-------VATLLPKMIERIHAWFEEVS- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ ++G L + + V AA +
Sbjct: 94 --------AKRGKRPTAF-KFLQEVKPEAIAYITIKTVLGTLTSAEQ---TTVQAAASAV 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK L V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFLQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH 418
+ + G + + W ++ VG R IE+L + + Q A + A
Sbjct: 187 EADMLSKGLMGGEAWSSWHKEDSIHVGVRCIEMLIEATGLVVLERQNAG----VVGADAE 242
Query: 419 ALRTVSKETKGGSKKYGVIE-CNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHF 477
L S+ + + G + +P+ Y P +VPP WT G ++
Sbjct: 243 TLSLASEYADAIATRAGALAGISPM---------------YQPCVVPPKPWTTVTGGGYW 287
Query: 478 F---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI-- 532
P ++RTHG K + R + V++A++ +T W++N +VL+V + I
Sbjct: 288 ANGRRPLALVRTHGKK----ALMRYEDVYMPEVYKAVNLAQSTAWKINKKVLAVANEITK 343
Query: 533 WS-CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591
W C ++R ++P+ E+ L W+ V ++++ R S+R +E L
Sbjct: 344 WKHCPVEDIPAIEREELPVKPDDIDENPEALTNWKRAAAAVYRKDKARKSRRLSLEFMLE 403
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G +WLKI
Sbjct: 404 QANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKAIGKEGFYWLKI 462
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
H AN GVDK+ R+ F E++ + I SA PLE WW + + PF LA C
Sbjct: 463 HGAN--CAGVDKVPFPERIKFIEDNHEHIMASAKNPLE-YTWWAEQDSPFCFLAFCFEYA 519
Query: 712 EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAAR 771
+ ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y +A +
Sbjct: 520 GVMHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKK 577
Query: 772 VLVIIQRDA-------------------QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
V I+QRD + L + L +R + K++VMT
Sbjct: 578 VNEIMQRDVISGTDDELVTETDKTTGEITEKAVLGTRTLAGQWLAYGANRSVTKRSVMTL 637
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAARGIMS 868
YG G R Q+ + +F A+ Y AK+ ++ AA M
Sbjct: 638 AYGSKEFGFRQQVLEDTIRPAIDSGKGLMFTIPNQAAGYMAKLIWDSVSVTVVAAVEAMK 697
Query: 869 WLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ 916
WL AK++A+E + V W TP G PV Q YRK ++T L ++ L
Sbjct: 698 WLQSAAKLLAAEVKDKKTGEVLRNRCAVHWVTPDGFPVWQEYRK----PLQTRLNLMFLG 753
Query: 917 R----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TFAGVHDS 964
+ + + +Q + PNFVHS DGSH+ T V A K G+ +FA +HDS
Sbjct: 754 QFRLQPTINTNKDSGIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDS 813
Query: 965 YWTHACDVDEMNRILREKFVELYE-----MPIFENLLDSFQKS-FPKLVFPPLPERGDFD 1018
+ T D + + +RE V+ YE +E D +S K+ P LP++G+ +
Sbjct: 814 FGTIPADAGNLFKAVRETMVDTYENCDVLADFYEQFADQLHESQLDKM--PALPKKGNLN 871
Query: 1019 LREVLGSPYFF 1029
LR++L S + F
Sbjct: 872 LRDILESDFAF 882
>gi|88933964|sp|Q8L6J4.2|RPO1A_TOBAC RecName: Full=DNA-directed RNA polymerase 1A; AltName:
Full=NictaRpoT1-syl; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1A
Length = 155
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 134/155 (86%), Positives = 146/155 (94%)
Query: 876 IIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNF 935
IIA EN PVRWTTPLGLPVVQPYRKLGRH +KTSLQILTLQRET+KVMVKRQRTAFPPNF
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 60
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
VHSLDGSHMMMTA+AC+++GL+FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PI ENL
Sbjct: 61 VHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENL 120
Query: 996 LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
L+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 121 LESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 155
>gi|344170841|emb|CCA83277.1| DNA-directed RNA polymerase from phage [blood disease bacterium R229]
Length = 795
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 241/839 (28%), Positives = 382/839 (45%), Gaps = 92/839 (10%)
Query: 226 NLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQL-PADMMAVITMHKLMGL 284
N PY ++F W P+RD I + + A+ L PA + + L
Sbjct: 13 NNPYSSAVFRRWLVPVRDMIEESVAATGKPGRRAAHVMLLRSLDPAAIAFIAVRSALTHT 72
Query: 285 LMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQ 344
+ GG++ R IG + E+ + F E + + D + S +
Sbjct: 73 VSGGGDNAR----NLGNDIGKGVYGELVLATF-EHINPELYWEVSHDLDKRRSKSSRHRY 127
Query: 345 EKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQ 404
+ LR K + + W R +VG ++EL+ + ++
Sbjct: 128 QTLRHSAQ---------------KAEIEVPYWSPSDRTQVGLWLVELMREVGLLE----- 167
Query: 405 LADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT--ARHMVIPY-MPM 461
++ V + G K+ + + + ++R M +P+ P
Sbjct: 168 ---------------VQRVHETRYGKHKERLEVMLSEEAAQIVQRIRGVVEMTMPFHQPC 212
Query: 462 LVPPVKWTGYDKGAHFF------LPSYV-MRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
+ PP W + G + LP V MR + RD + K + V +A++ L
Sbjct: 213 IEPPKDWVSVNDGGYHTQEMRRQLPHCVNMRRQHLRTMRDQIA---KADMTNVLDAINHL 269
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE-----------TEDEA-QL 562
+W+VN +L V+ + G ++V + P PE TE +A Q
Sbjct: 270 QRVRWQVNTDILDVVLAL-GKGRDSGEVVGQTWEDKPAVPEWLTPGMKADDMTEAQAEQF 328
Query: 563 RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622
++W+ + +N+ R + A K +D ++ + DFRGR Y M ++
Sbjct: 329 KQWKRAMAQWHTDNKARGIKWGRFYSATQTALKYRDYPAIHFVYQADFRGRLYAMTTGVS 388
Query: 623 HLGSDLCRGILEFAEGRTLGKS-GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
GSD+ + +L FA+G+ L + + W KI+ AN Y G+DK++ E R+A+ + H I
Sbjct: 389 PQGSDMQKALLRFADGKPLEDTEAVRWFKINGANRY--GIDKVTFEERIAWVDAHEAMIL 446
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
AD P+ W + + P Q LA CI RS P TF+S IPV DGSCNGLQH++
Sbjct: 447 RIADDPVSRHDDWKEVDSPLQFLAWCIEYARWRRS--PGTFVSRIPVGFDGSCNGLQHFS 504
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR-DPAVFPDALR---AKLLL 797
A+ RD++G AVNLV KP D+Y +A ++QR Q DP + R +K L
Sbjct: 505 AMLRDSVGGRAVNLVPAGKPNDIYQQVAD----LVQRKLQAMDPETLAERDRPFLSKWLA 560
Query: 798 SQVDRKLVKQTVMTSVYGVT-YIGARDQIKRRL-KERGAPMEEAELFGASCYAAKVTLTA 855
++RKLVK++VMT YG T Y A + L K+ ++ E A+ + + V +
Sbjct: 561 HGMNRKLVKRSVMTLPYGSTRYSCAEFIVDDYLRKDEAKEFDKLEYSLAANFLSYVVWES 620
Query: 856 LGEMFQAARGIMSWLGECA-KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL---Q 911
+GE+ AA M WL A +I NQ + W TP G PVVQ Y++L ++ L
Sbjct: 621 IGEVVIAASQAMDWLQRSAHALIRGGNQQIEWVTPSGFPVVQVYQELEIIRARSLLLGGM 680
Query: 912 ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHAC 970
+ + E VKR + PNFVHS+D +H+++T +ACR AG+ + A +HD Y THA
Sbjct: 681 TVKVATTGEHPSVKRHKNGMAPNFVHSMDAAHLVLTTIACRDAGVESLAMIHDDYGTHAA 740
Query: 971 DVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
D ++ +++RE FV +YE N + F L PP P G+ DL+EVL S +FF
Sbjct: 741 DAGKLFKLIRETFVRMYEE---NNPILDFATGRDGL--PPAPAPGELDLQEVLESQFFF 794
>gi|238695622|ref|YP_002922649.1| P35 [Xanthomonas phage phiL7]
gi|190343989|gb|ACE75775.1| P35 [Xanthomonas phage phiL7]
Length = 804
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 238/832 (28%), Positives = 378/832 (45%), Gaps = 92/832 (11%)
Query: 228 PYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMT 287
PY ++++ + PL + I +Q ++ K A+ + + A + + + LM
Sbjct: 36 PYAQAVYRRFVLPLAEVIKADQNAVKIRGPKPAHRHLIAAVDPEPAAFVAVRAALVQLM- 94
Query: 288 GGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKL 347
G + RARV+ +G A+ E+ + F E E
Sbjct: 95 GAKADRARVLITE--VGKAVYHELLLTNF----------------ESLEPKLFHQLTLGF 136
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQDDFKP-WGQDARAKVGSRVIELLTQTAYIQSPADQLA 406
+++ D+ ++ +L A R + + P W +VG+ V+ L + LA
Sbjct: 137 ARRL-DMNERYRLNAYREEAESKGLALPEWEGLDIERVGAWVVSELATLGMLTIQTQSLA 195
Query: 407 DAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPV 466
+ A T T+ G ++ V+E +P ++P + PP+
Sbjct: 196 KKQRVLVSALTEETSTLIS----GIREM-VVENSPY---------------FLPCVEPPI 235
Query: 467 KWTGYDKGAHFF-----LPSYVMRTH-GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWR 520
WT +D+G L Y ++TH G + D T + L+ L TKWR
Sbjct: 236 PWTKHDEGGWHTDEMRRLMPYAIKTHAGVRHLLDLADLTKE------LACLNALQETKWR 289
Query: 521 VNNRVLSVLDRIWSCGGR--LADLVDRNDVPLPEKPE------------TEDEAQLRKWQ 566
+N +L L + GG+ L +++ + + P PE+PE + + R W+
Sbjct: 290 INRPILEALRLM---GGKIDLGEVLAQGEEPRPERPEWLGERMKVEAMDVDQAKEFRAWK 346
Query: 567 WKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGS 626
++ +ER + + VA K + + ++ + DFRGR Y M ++ GS
Sbjct: 347 RLTAKWHRKKKERAVKWGRYRHAMQVATKFVEYDALHFVYFCDFRGRKYAMTTGVSPQGS 406
Query: 627 DLCRGILEFAEGRTLGKSGLH-WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSAD 685
DL + +L FAEG+ L G W +I AN Y G DK+ +GR+ + H +DI +A
Sbjct: 407 DLQKALLHFAEGKPLHTQGAKDWFRITGANRY--GYDKVDLQGRIDWVREHHEDILAAAG 464
Query: 686 KPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGR 745
P+ WWLK P Q LA C E ++F+SH+ DGSCNGLQ+++A+ R
Sbjct: 465 DPV-ANGWWLKGSKPLQFLAWCFEYAEW--QVFGDSFLSHLSAGMDGSCNGLQNFSAMLR 521
Query: 746 DTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLV 805
D +G A NLV KP D+Y G V + + DP F + + L V+R LV
Sbjct: 522 DEVGGKATNLVPMPKPQDIY-GRVGEVTTTLLLEVPPDPLAFHN----RWLAHGVNRSLV 576
Query: 806 KQTVMTSVYGVTYIGARDQI-KRRLKERGAP-MEEAELFGASCYAAKVTLTALGEMFQAA 863
K++VMT YG T + I + L+E P +E E A+ Y +K A+G++ A
Sbjct: 577 KRSVMTLPYGSTRFSCAEFIMQDYLREGLIPEFDELEHAKAAQYLSKFVWKAIGDVVVKA 636
Query: 864 RGIMSWLGECA-KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL---QILTLQRET 919
RG M WL A ++I + + W TP G PVVQ Y + H ++T L L ++ E
Sbjct: 637 RGAMEWLQVSASELIDAGESRICWVTPTGFPVVQVYWEENVHNIRTKLCGRARLFVRTEA 696
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRI 978
+ +R R PNFVHSLD SH+ AC G+ VHD + H D + +
Sbjct: 697 DTPDKRRHRNGISPNFVHSLDASHLTSVTNACTALGIRDLHMVHDDFGCHCADAPALYTV 756
Query: 979 LREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+RE+FV++YE + L FQ +P+ PLP +G D+REVL SP+FF+
Sbjct: 757 IREEFVKMYEE---HHPLAEFQHRYPQCT-GPLPSQGTLDIREVLASPFFFS 804
>gi|216012|gb|AAA32569.1| RNA polymerase [Enterobacteria phage T7]
Length = 883
Score = 292 bits (747), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 253/915 (27%), Positives = 414/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V +++R R S+R
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKDRARKSRRIS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 457 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 514 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIY 571
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 572 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAHGVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGPMFTQPNQAAGYMAKLIWESVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 747
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 748 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 808 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 868 GNLNLRDILESDFAF 882
>gi|211939287|pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap And
7nt Of Rna
gi|211939296|pdb|3E3J|C Chain C, Crystal Structure Of An Intermediate Complex Of T7 Rnap And
8nt Of Rna
gi|211939297|pdb|3E3J|B Chain B, Crystal Structure Of An Intermediate Complex Of T7 Rnap And
8nt Of Rna
Length = 889
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 251/915 (27%), Positives = 413/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 52 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 99
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 100 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 147
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 148 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 192
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 193 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 252
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S + + P +VPP WTG
Sbjct: 253 APEYAEAIATRAGALAGIS------------------------LMFQPCVVPPKPWTGIT 288
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 289 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 344
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 345 NVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKDKARKSRRIS 403
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 404 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 462
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 463 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLA 519
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 520 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIY 577
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 578 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 637
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 638 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 697
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 698 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 753
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 754 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 813
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 814 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 873
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 874 GNLNLRDILESDFAF 888
>gi|150261381|pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps.
gi|150261384|pdb|2PI5|A Chain A, T7 Rna Polymerase Complexed With A Phi10 Promoter
Length = 878
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 252/915 (27%), Positives = 414/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 41 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 88
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 89 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 136
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 137 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 181
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 182 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 241
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 242 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 277
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 278 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 333
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 334 NVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKDKARKSRRIS 392
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 393 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 451
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 452 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLA 508
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 509 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIY 566
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 567 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 626
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 627 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 686
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 687 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 742
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 743 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 802
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 803 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 862
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 863 GNLNLRDILESDFAF 877
>gi|385663996|gb|AFI71020.1| T7* RNAP [Cloning vector SBa_000560]
Length = 885
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 252/915 (27%), Positives = 414/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 48 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 95
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 96 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 143
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 144 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 188
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 189 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 248
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 249 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 284
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 285 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 340
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 341 NVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKDKARKSRRIS 399
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 400 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 458
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 459 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLA 515
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 516 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIY 573
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 574 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 633
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 634 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 693
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 694 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 749
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 750 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 809
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 810 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 869
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 870 GNLNLRDILESDFAF 884
>gi|9627432|ref|NP_041960.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|251784243|ref|YP_002998547.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253774277|ref|YP_003037108.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254287609|ref|YP_003053357.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|12643995|sp|P00573.2|RPOL_BPT7 RecName: Full=DNA-directed RNA polymerase
gi|2781155|pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form, Low
Temperature Data, Alpha-Carbons Only
gi|2781156|pdb|4RNP|B Chain B, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form, Low
Temperature Data, Alpha-Carbons Only
gi|2781157|pdb|4RNP|C Chain C, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form, Low
Temperature Data, Alpha-Carbons Only
gi|5107544|pdb|1CEZ|A Chain A, Crystal Structure Of A T7 Rna Polymerase-T7 Promoter Complex
gi|7245970|pdb|1QLN|A Chain A, Structure Of A Transcribing T7 Rna Polymerase Initiation
Complex
gi|27065076|pdb|1H38|A Chain A, Structure Of A T7 Rna Polymerase Elongation Complex At 2.9a
Resolution
gi|27065077|pdb|1H38|B Chain B, Structure Of A T7 Rna Polymerase Elongation Complex At 2.9a
Resolution
gi|27065078|pdb|1H38|C Chain C, Structure Of A T7 Rna Polymerase Elongation Complex At 2.9a
Resolution
gi|27065079|pdb|1H38|D Chain D, Structure Of A T7 Rna Polymerase Elongation Complex At 2.9a
Resolution
gi|27065724|pdb|1MSW|D Chain D, Structural Basis For The Transition From Initiation To
Elongation Transcription In T7 Rna Polymerase
gi|46015618|pdb|1S0V|A Chain A, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015619|pdb|1S0V|B Chain B, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015620|pdb|1S0V|C Chain C, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015621|pdb|1S0V|D Chain D, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|47169080|pdb|1S76|D Chain D, T7 Rna Polymerase Alpha Beta Methylene Atp Elongation
Complex
gi|47169084|pdb|1S77|D Chain D, T7 Rnap Product Pyrophosphate Elongation Complex
gi|431189|emb|CAA24390.1| unnamed protein product [Enterobacteria phage T7]
gi|37956644|gb|AAP33914.1| gene 1 [Enterobacteria phage T7]
gi|45861229|gb|AAS78492.1| T7 RNA polymerase [Cloning vector pPRCG]
gi|45861242|gb|AAS78503.1| T7 RNA polymerase [Cloning vector pTCCR-Auto]
gi|71534851|gb|AAZ32820.1| protein 1 [Enterobacteria phage T7.1]
gi|125743113|gb|ABN54763.1| T7 RNA polymerase [Expression vector pR6K-lys-Gm]
gi|125743121|gb|ABN54770.1| T7 RNA polymerase [Expression vector pUC19-T7pol-lacI-lys]
gi|125743124|gb|ABN54772.1| T7 RNA polymerase [Expression vector pBT20-Dbla-T7pol]
gi|194021543|gb|ACF32352.1| T7 DNA-directed RNA polymerase [Enterobacteria phage DE3]
gi|226440714|gb|ACO57213.1| RNA polymerase [Enterobacteria phage T7]
gi|242376516|emb|CAQ31221.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253325321|gb|ACT29923.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253976916|gb|ACT42586.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|265524972|gb|ACY75835.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|283825308|gb|ADB43112.1| T7 RNA polymerase [Expression vector pCAGGS-T7]
gi|299008115|gb|ADJ00046.1| T7 RNA polymerase [T7RNA polymerase vector pGemT7cat]
gi|299008117|gb|ADJ00047.1| T7 RNA polymerase [Mariner mini-transposon delivery vector pMaT7cat]
Length = 883
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 252/915 (27%), Positives = 414/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKDKARKSRRIS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 457 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 514 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIY 571
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 572 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 747
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 748 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 808 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 868 GNLNLRDILESDFAF 882
>gi|70937775|ref|XP_739650.1| DNA-dependent RNA polymerase [Plasmodium chabaudi chabaudi]
gi|56516804|emb|CAH79196.1| DNA-dependent RNA polymerase, putative [Plasmodium chabaudi
chabaudi]
Length = 485
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 161/494 (32%), Positives = 267/494 (54%), Gaps = 27/494 (5%)
Query: 434 YGVI----ECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489
YGVI C +L + H+ + Y+PM+ P KW D+G L + +R +
Sbjct: 2 YGVIHMRESCANFLLSNAINS--HVPLNYLPMICKPKKWED-DQGGMLLLKNNFIRYNIK 58
Query: 490 KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP 549
V + + + +GN W+VN +L ++ + G + + +
Sbjct: 59 PLFNLNVCNMTR-----IKNIVSEIGNVGWKVNKEILHYIEYAYMNGKTIGKIPLNKNYN 113
Query: 550 LPE----KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYP 605
LP K + +++K+ + + N+ S+R KL+VA+ K+ E Y+P
Sbjct: 114 LPYNIDFKNNNNNNEEIKKYYLLKEEIARLNKCLISERPTFLQKLAVAKTFKENEKIYFP 173
Query: 606 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLS 665
HN+DFRGR YP+ P+L+H+G D+CR ++ F++ + +G +GL+WLKIHLAN + G DKL+
Sbjct: 174 HNIDFRGRMYPLSPHLHHMGDDICRSLIVFSDDKEIGPNGLYWLKIHLANNF--GKDKLN 231
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
+ R+ + +N++D+I D P + +W A++P+Q L+V I+L A+ S P + S+
Sbjct: 232 FKKRIEWVDNNIDNIKKLRDNPFDNLEFWGLADNPWQALSVSIDLINAINCSDPSKYKSN 291
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD-----A 780
IP+ QDG+CNGLQHYAALG+D G AVN++ ++P D+Y+ + V+ I+ D +
Sbjct: 292 IPIQQDGTCNGLQHYAALGKDKDGGRAVNILPSDEPQDIYTVVLDIVINKIKNDMDNGGS 351
Query: 781 QRDPAVF---PDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP-M 836
+ + + F P + + RK+VKQT+MT YGVT IGA++Q+K +++ A
Sbjct: 352 KNESSTFLSKPQLANYCFKYNLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQSMIAKDT 411
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
++ + S Y A ++ E+F+ A I W +K+ N P+ W +P+GLP Q
Sbjct: 412 DKNTINELSKYIANYIFESISEIFKRAMIIKKWFNHLSKVTNDLNIPITWISPIGLPCEQ 471
Query: 897 PYRKLGRHTVKTSL 910
PYR R V T L
Sbjct: 472 PYRLGTRILVNTPL 485
>gi|385867953|gb|AFI93668.1| T7 RNA polymerase [Binary vector pVCPGUS(I)23010]
gi|385867959|gb|AFI93673.1| T7 RNA polymerase [Binary vector pVCPGUS23010]
Length = 884
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 252/915 (27%), Positives = 414/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 47 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 94
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 95 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 142
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 143 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 187
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 188 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 247
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 248 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 283
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 284 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 339
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 340 NVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKDKARKSRRIS 398
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 399 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 457
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 458 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLA 514
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 515 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIY 572
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 573 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 632
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 633 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 692
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 693 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 748
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 749 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 808
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 809 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 868
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 869 GNLNLRDILESDFAF 883
>gi|37956858|gb|AAP34124.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 251/915 (27%), Positives = 410/915 (44%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L + V AA I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACLTSAD---NTTVQAAASAI 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +V P WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVLPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 339 NVITKWKHCPVEYIPAIEREELPMKPENIDMNPEA-LIAWKRAAAAVYRKDKARKSRRIS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 457 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIIACAKSPLE-NTWWAEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 514 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIY 571
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 572 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYSVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 747
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 748 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 808 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 868 GNLNLRDILESDFAF 882
>gi|147820783|emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
Length = 1312
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 139/245 (56%), Positives = 184/245 (75%), Gaps = 9/245 (3%)
Query: 305 DAIEQEVRIHKFLEKTKKKNETKN-KEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
+ ++VRIH FLEKTK K +EG E+E LRK+V I+K+K+ V
Sbjct: 584 STVNEKVRIHSFLEKTKNFERHKTVGHSQEG------LREKEILRKRVKSFIRKKKIIEV 637
Query: 364 RRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTV 423
+++VK ++ PWG+D +AK+GSR+IELLT+TAY+Q+P Q AD PPD+ PAF H +TV
Sbjct: 638 QKLVK-NEEITPWGRDTQAKLGSRLIELLTETAYVQTPVXQSADCPPDVRPAFRHTFKTV 696
Query: 424 SKET-KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
+KE+ + +KYGVIEC+PLVL GL+RTA+HMVIPY+PML+PP KW GYDKG + FLPSY
Sbjct: 697 TKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSY 756
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
VMRTHG+++Q+D VK P++QL+ VFEALDTLGNTKWR+N RVLSV++ IW+ GG L L
Sbjct: 757 VMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGL 816
Query: 543 VDRND 547
VDR +
Sbjct: 817 VDREN 821
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 101/140 (72%)
Query: 173 SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKS 232
+G+N + R Y +L+ RQVK ETEAWE+ EYRE+ +MCE+KLAPNLPY+K+
Sbjct: 127 TGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKA 186
Query: 233 LFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG 292
LFLGWFEPLR+AI KEQ R K K AYAP+ + LPAD MAVI MHK+MGL+M G E G
Sbjct: 187 LFLGWFEPLREAIEKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEG 246
Query: 293 RARVVQAACIIGDAIEQEVR 312
RVVQAA IG AIEQE +
Sbjct: 247 CVRVVQAAVQIGMAIEQEAK 266
>gi|3891671|pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme
Length = 883
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 252/916 (27%), Positives = 415/916 (45%), Gaps = 149/916 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WSCGGRLADL--VDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRC 584
+ I W + D+ ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 339 NVITKWK-HSPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKDKARKSRRI 396
Query: 585 DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS 644
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK
Sbjct: 397 SLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKE 455
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
G +WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF L
Sbjct: 456 GYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFL 512
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+
Sbjct: 513 AFCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDI 570
Query: 765 YSGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLV 805
Y +A +V I+Q DA + D AL + L V R +
Sbjct: 571 YGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVT 630
Query: 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQ 861
K++VMT YG G R Q+ + + +F A+ Y AK+ ++
Sbjct: 631 KRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVV 690
Query: 862 AARGIMSWLGECAKIIASE------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTS 909
AA M+WL AK++A+E V W TP G PV Q Y+K ++T
Sbjct: 691 AAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRSAVHWVTPDGFPVWQEYKK----PIQTR 746
Query: 910 LQILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-T 957
L ++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +
Sbjct: 747 LNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIES 806
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMP-IFENLLDSFQKSFPKLVF---PPLPE 1013
FA +HDS+ T D + + +RE V+ YE + + D F + P LP
Sbjct: 807 FALIHDSFGTIPADAANLFKAVRETMVDTYESSDVLADFYDQFADQLHESQLDKMPALPA 866
Query: 1014 RGDFDLREVLGSPYFF 1029
+G+ +LR++L S + F
Sbjct: 867 KGNLNLRDILESDFAF 882
>gi|194100364|ref|YP_002003938.1| gp1 [Enterobacteria phage 13a]
gi|193201411|gb|ACF15888.1| gp1 [Enterobacteria phage 13a]
Length = 883
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 251/915 (27%), Positives = 415/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSVDNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE +T +A L W+ V ++++ R S+R
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPEDIDTNPDA-LTAWKRAAAAVYRKDKARKSRRIS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E++ ++I A PLE WW + + PF LA
Sbjct: 457 YYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLE-NTWWAEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ D +G AVNL+ E D+Y
Sbjct: 514 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLLDEIGGRAVNLLPSETVQDIY 571
Query: 766 SGIAARVLVIIQRD----AQRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V VI+Q D + D AL + L V R + K
Sbjct: 572 GIVAKKVNVILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ A+ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWEAVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 747
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 748 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 808 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +L+++L S + F
Sbjct: 868 GNLNLQDILKSDFAF 882
>gi|338826814|ref|YP_004678728.1| RNA polymerase [Enterobacteria phage K30]
gi|335335277|gb|AEH41021.1| RNA polymerase [Enterobacteria phage K30]
Length = 906
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 230/838 (27%), Positives = 393/838 (46%), Gaps = 137/838 (16%)
Query: 268 LPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETK 327
+ ++ +A++T+ ++G L + +A + Q + +G A+E E R + E+ + K
Sbjct: 129 VSSEAIALLTIKVVLGTLT---DASKATIQQVSSQLGKALEDEARFGRIREQEASYFK-K 184
Query: 328 NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR-----RIVKGQDDFKPWGQDARA 382
N D+ L K+V + KK + V + + G D++ W D +
Sbjct: 185 NVADQ--------------LDKRVGHVYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQM 230
Query: 383 KVGSRVIELLTQ-TAYIQSPADQLADAPPDIF--------PAFTHALRTVSKETKGGSKK 433
VG++++ELL + T ++ +++AD D+ PAF L SK+
Sbjct: 231 HVGTKLLELLIEGTGLVEMTKNKMADGSDDVTSMQMVQLAPAFVELL----------SKR 280
Query: 434 YGVIE-CNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGA 489
G + +P+ Y P +VPP W G ++ + P ++RTH
Sbjct: 281 AGALAGISPM---------------YQPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSK 325
Query: 490 KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI--WS-CGGRLADLVDRN 546
K ++R + V++A++ NT W+VN +VL+V++ I W C ++R
Sbjct: 326 K----ALRRYEDVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEIINWKHCPVGDVPAIERE 381
Query: 547 DVPLPEKPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
+ LP +P+ D E + W+ + V ++++ R S+R +E ++ A K + + ++
Sbjct: 382 E--LPPRPDDIDTNEVARKAWRKEAAAVYRKDKARQSRRLSMEFMVAQANKFANHKAIWF 439
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
P+N+D+RGR Y + + N G+D+ +G+L A+G+ +G G +WLKIH AN GVDK+
Sbjct: 440 PYNMDWRGRVYAVSMF-NPQGNDMTKGMLTLAKGKPIGLDGFYWLKIHGAN--CAGVDKV 496
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
R+ F E + +I SA PL WW + + PF LA C +
Sbjct: 497 PFPERIKFIEENEANILASAADPL-NNTWWTQQDSPFCFLAFCFEYAGVKHHGL--NYNC 553
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------------ 772
+P+ DGSC+G+QH++A+ RD++G AVNL+ + D+Y +A +V
Sbjct: 554 SLPLAFDGSCSGIQHFSAMLRDSIGGRAVNLLPSDTVQDIYKIVADKVNEVLHQHVINGS 613
Query: 773 LVIIQRDAQRDPAVFPD-------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
++++ A ++ F + L A+ L V RK+ K++VMT YG G R Q+
Sbjct: 614 QTVVEQIADKETGEFREKVMLGESVLAAQWLQYGVTRKVTKRSVMTLAYGSKEFGFRQQV 673
Query: 826 KRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
+ E +F A+ Y AK+ A+ AA M+WL AK++A+E
Sbjct: 674 LEDTIQPAIDNGEGLMFTHPNQAAGYMAKLIWDAVTVTVVAAVEAMNWLKSAAKLLAAEV 733
Query: 882 Q------------PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRET 919
+ + W TP G PV Q YRK LG+ VK + +
Sbjct: 734 KDKKTKEVLRKRCAIHWVTPDGFPVWQEYRKQNQARLKLVFLGQANVKMTYNT----GKD 789
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNR 977
++ +Q + PNFVHS DGSH+ MT V + G+ +FA +HDS+ T D + +
Sbjct: 790 SEIDAHKQESGIAPNFVHSQDGSHLRMTVVHANEVYGIDSFALIHDSFGTIPADAGNLFK 849
Query: 978 ILREKFVELYE-----MPIFENLLDSFQKS-FPKLVFPPLPERGDFDLREVLGSPYFF 1029
+RE V+ YE + D +S K+ P +P +GD +LR++L S + F
Sbjct: 850 AVRETMVKTYEDNDVIADFYNQFADQLHESQLDKM--PAVPAKGDLNLRDILESDFAF 905
>gi|30387455|ref|NP_848264.1| RNA polymerase [Yersinia phage phiA1122]
gi|30314092|gb|AAP20500.1| RNA polymerase [Yersinia phage phiA1122]
gi|432142747|gb|AGB07325.1| RNA polymerase [Yersinia phage R]
Length = 883
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 250/915 (27%), Positives = 415/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + + Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 247 TPEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE +T EA L W+ V ++++ R S+R
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPEDIDTNPEA-LTAWKRAAAAVYRKDKARKSRRIS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E++ ++I A PLE WW + + PF LA
Sbjct: 457 YYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLE-NTWWAEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ D +G AVNL+ D+Y
Sbjct: 514 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIY 571
Query: 766 SGIAARVLVIIQRD------------AQRDPAVFPD-------ALRAKLLLSQVDRKLVK 806
+A +V VI+Q D + P+ AL + L V R + K
Sbjct: 572 GIVAKKVNVILQADVINGTDNEVVTVTDENTGEIPEKVKLGTKALAGQWLAYGVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ A+ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWEAVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 747
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 748 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 808 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +L+++L S + F
Sbjct: 868 GNLNLQDILKSDFAF 882
>gi|441463322|gb|AGC35603.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph02]
gi|441463383|gb|AGC35663.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph03]
Length = 812
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 221/795 (27%), Positives = 365/795 (45%), Gaps = 80/795 (10%)
Query: 268 LPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETK 327
+ +D +T+ + + A V A + G IE E+R KF ++ K +
Sbjct: 66 IASDKAIFLTLRCIFNAFQNSRQGKEATPVSIANVCGRLIEDEIRFSKFQQQFKAYYQ-- 123
Query: 328 NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSR 387
+ D + + + + +T +D +KPW R VG R
Sbjct: 124 ---EIAADFKRKGSKDYRYMHRVLTHSANSH-----------EDGWKPWSVSERVDVGMR 169
Query: 388 VIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL 447
+++L+ Q H E K + VI L+ +
Sbjct: 170 LLDLVVQ-----------------------HTDLIEKGEYKRNGQTIIVIRPTDATLEFI 206
Query: 448 ER--TARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-Q 503
++ ++ P MP ++ P WT D+G ++ P+ H + K+ ++
Sbjct: 207 QKYDEVAELIHPRQMPCIIKPDDWTAIDQGG-YYSPTLRSACHLVLTRHPKQKKILRRAD 265
Query: 504 LEPVFEALDTLGNTKWRVNNRVLSVLDRIWS----CGGRLADLVDRNDVPLPEKPE---T 556
L V +A++ + +W+VN +VL VL +W+ G ++ + ++ P+ +K + T
Sbjct: 266 LSSVMQAVNGAQSVEWKVNKKVLEVLKLVWAKNLQVGVPSSEKLVPSECPIKDKKKEEMT 325
Query: 557 EDEAQL-RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
+ EA + +W+ + V +ER + I L A + + F+Y +DFRGR Y
Sbjct: 326 DAEALVFMEWKRQASEVYTREKERIGKCFQITSILRAANEYSLYDRFWYVWQLDFRGRLY 385
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
+ G D+ +G+L FA G+ LG G++WLK+HLAN Y G DK ++ R+ + +
Sbjct: 386 TATSGFSPQGPDVAKGLLTFAGGKPLGSRGVYWLKVHLANRY--GFDKGHYDERVQWVDQ 443
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA----LRSSSPETFISHIPVHQD 731
+ +A P+ W A+ P+Q LA E L PE +IS++P+ D
Sbjct: 444 RHNAFIAAAADPIAHIDVWKDADKPYQFLAALFEYKEMHDGRLVGKRPEEYISYLPIGLD 503
Query: 732 GSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA- 790
GSCNGLQH++A+ RD +G AA NLVA E+P D+Y+ +A L +++++ V A
Sbjct: 504 GSCNGLQHFSAMLRDPVGGAATNLVAAERPNDIYAQVAQVCLDKVKKESIAGSDVSAVAT 563
Query: 791 ----LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
+ ++ RK+ K+ VMT YG T R + + E + A S
Sbjct: 564 EWVSFAVRYGDGKMPRKVAKRPVMTMPYGST----RQSCTQYIFEAVNELAPAHFTSLSA 619
Query: 847 YAAKVTLT-----ALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKL 901
+ A LT ++GE+ AAR M WL +CA +++ + + W T G V R++
Sbjct: 620 FLASSALTPYLWNSIGEVVVAARQGMDWLQKCASVMSKQGLGITWRTKDGFIVYMFEREM 679
Query: 902 GRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-T 957
+ T L R TE + QR PNFVHS DG+H+ T + ++AG+ +
Sbjct: 680 EVVRIDTVLGGRYQARVGNYTETLDKNGQRNGVAPNFVHSQDGAHLRATILKAQEAGIAS 739
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD--SFQKSFPKLVFPPLPERG 1015
A +HD Y THA D D ++R++RE FVE Y F+ L+ +Q+ K P LP+ G
Sbjct: 740 LALIHDDYGTHAADTDTLHRLIRESFVEQYTE--FDPLVSFRDWQEMIGKEKLPELPKYG 797
Query: 1016 DFDLREVLGSPYFFN 1030
D D+ EVL SP+FF
Sbjct: 798 DLDITEVLKSPFFFG 812
>gi|281416282|ref|YP_003347522.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
gi|262410401|gb|ACY66666.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
Length = 906
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 229/836 (27%), Positives = 390/836 (46%), Gaps = 133/836 (15%)
Query: 268 LPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETK 327
+ ++ +A++T+ ++G L + +A + Q + +G A+E E R + E+ + K
Sbjct: 129 VSSEAIALLTIKVVLGTLT---DASKATIQQVSSQLGKALEDEARFGRIREQEATYFK-K 184
Query: 328 NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR-----RIVKGQDDFKPWGQDARA 382
N D+ L K+V + KK + V + + G D++ W D +
Sbjct: 185 NVADQ--------------LDKRVGHVYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQM 230
Query: 383 KVGSRVIELLTQ-TAYIQSPADQLADAPPDIF--------PAFTHALRTVSKETKGGSKK 433
VG++++ELL + T ++ +++AD D+ PAF L SK+
Sbjct: 231 HVGTKLLELLIEGTGLVEMTKNKMADGSDDVTSMQMVQLAPAFVELL----------SKR 280
Query: 434 YGVIE-CNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGA 489
G + +P+ Y P +VPP W G ++ + P ++RTH
Sbjct: 281 AGALAGISPM---------------YQPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSK 325
Query: 490 KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI--WS-CGGRLADLVDRN 546
K ++R + V++A++ NT W+VN +VL+V++ I W C ++R
Sbjct: 326 K----ALRRYADVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEIINWKHCPVGDVPAIERE 381
Query: 547 DVPLPEKPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
+ LP +P+ D E + W+ + V ++++ R S+R +E ++ A K + + ++
Sbjct: 382 E--LPPRPDDIDTNEVARKAWRKEAAAVYRKDKARQSRRLSMEFMVAQANKFANHKAIWF 439
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
P+N+D+RGR Y + + N G+D+ +G+L A+G+ +G G +WLKIH AN GVDK+
Sbjct: 440 PYNMDWRGRVYAVSMF-NPQGNDMTKGMLTLAKGKPIGLDGFYWLKIHGAN--CAGVDKV 496
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
R+ F E + +I SA PL WW + PF LA C +
Sbjct: 497 PFPERIKFIEENEGNILASAADPL-NNTWWTTQDSPFCFLAFCFEYAGVKHHGL--NYNC 553
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------------ 772
+P+ DGSC+G+QH++A+ RD++G AVNL+ + D+Y +A +V
Sbjct: 554 SLPLAFDGSCSGIQHFSAMLRDSIGGRAVNLLPSDTVQDIYKIVADKVNEVLHQHAVNGS 613
Query: 773 LVIIQRDAQRDPAVFPD-------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
++++ A ++ F + L A+ L V RK+ K++VMT YG G R Q+
Sbjct: 614 QTVVEQIADKETGEFREKVTLGESVLAAQWLQYGVTRKVTKRSVMTLAYGSKEFGFRQQV 673
Query: 826 KRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
+ E +F A+ Y AK+ A+ AA M+WL AK++A+E
Sbjct: 674 LEDTIQPAIDNGEGLMFTHPNQAAGYMAKLIWDAVTVTVVAAVEAMNWLKSAAKLLAAEV 733
Query: 882 Q------------PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRET 919
+ + W TP G PV Q YRK LG+ VK + +
Sbjct: 734 KDKKTKEVLRKRCAIHWVTPDGFPVWQEYRKQNQARLKLVFLGQANVKMTYNT----GKD 789
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNR 977
++ +Q + PNFVHS DGSH+ MT V + G+ +FA +HDS+ T D + +
Sbjct: 790 SEIDAHKQESGIAPNFVHSQDGSHLRMTVVHANEVYGIDSFALIHDSFGTIPADAGNLFK 849
Query: 978 ILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFF 1029
+RE V+ YE + + D F + P P +GD +LR++L S + F
Sbjct: 850 AVRETMVKTYEDNDVIADFYDQFADQLHESQLDKMPAAPAKGDLNLRDILESDFAF 905
>gi|387941817|gb|AFK13398.1| DNA-directed RNA polymerase [Yersinia phage YpP-R]
Length = 883
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 250/915 (27%), Positives = 414/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + + Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 247 TPEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE +T EA L W+ V ++++ R S+R
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPEDIDTNPEA-LTAWKRAAAAVYRKDKARKSRRIS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E++ ++I A PLE WW + + PF LA
Sbjct: 457 YYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLE-NTWWAEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ D +G AVNL+ D+Y
Sbjct: 514 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIY 571
Query: 766 SGIAARVLVIIQRD----AQRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V VI+Q D + D AL + L V R + K
Sbjct: 572 GIVAKKVNVILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ A+ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWEAVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 747
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 748 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 808 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +L+++L S + F
Sbjct: 868 GNLNLQDILKSDFAF 882
>gi|422935529|ref|YP_007005430.1| RNA polymerase, partial [Erwinia phage vB_EamP-L1]
gi|339507913|gb|AEJ81474.1| RNA polymerase [Erwinia phage vB_EamP-L1]
Length = 900
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 246/896 (27%), Positives = 405/896 (45%), Gaps = 110/896 (12%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMA 255
Q+++E EA+ + + + + E + K L A + E R A
Sbjct: 52 QLQLEHEAYTEGEKRFIKAMNRQIEAGEFGDNAVAKPLMSALHPKFSTAYTEWHETARAA 111
Query: 256 KHKVAYAPYFDQ-LPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIH 314
K + A Q L A+ A IT L L T + + V Q A IG IE E+R
Sbjct: 112 KGRKPVAYNMTQGLSAESAAAIT---LKCALATLAKDVQCPVTQVANNIGMTIEDELRFG 168
Query: 315 KFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
+ ++ +K + E E + + +K +I+ + L + I+K +D +
Sbjct: 169 RIRDQEQKFYK-------ERVEKALNQRKGQVYKKAFMQVIEGKMLE--KGILKPEDTWT 219
Query: 375 PWGQDARAKVGSRVIELLTQ-TAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W + G R++ELL + T ++ +A D+ +R + SK+
Sbjct: 220 RWTKGETINTGIRMLELLIESTGLVELERLHAGNAAKDV-----ETVRLTKEYADALSKR 274
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGAK 490
G L G+ Y P +VPP WT G ++ P ++RT
Sbjct: 275 AGA-------LAGIAPM-------YQPCVVPPKPWTEAVGGGYWAAGRKPLQLVRTRSLA 320
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI--WS-CGGRLADLVDRND 547
++R + + V +A++ NT WRVN +VL V + I W C +DR +
Sbjct: 321 ----ALRRYEEVSMPEVIKAVNIAQNTAWRVNKKVLDVANAITQWQHCPVADVPAMDRGE 376
Query: 548 VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHN 607
+P +E L+ W+ + ++++ R S+R +E LS A K + + ++P N
Sbjct: 377 MPARPLDIDTNEIALKAWKKEASAFYRKDKARVSRRLSMEFMLSQANKFANYKAIWFPQN 436
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHE 667
+D+RGR Y + P N G+D+ +G+L FA+G+ +G+ G +WLKIH AN GVDK+
Sbjct: 437 MDWRGRVYAV-PMFNPQGNDMTKGLLTFAQGKPIGEDGFYWLKIHGAN--TAGVDKVPFP 493
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIP 727
R+ F E++ +I + A PLE WW + + PF LA C + ++ +P
Sbjct: 494 QRIKFVEDNHTNIMECAKAPLE-NTWWAEQDSPFCFLAFCFEYAGVINHGL--SYNCSLP 550
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF 787
+ DGSC+G+QH++A+ RD +G AVNL+ + D+Y ++ +V ++++D +
Sbjct: 551 LAFDGSCSGIQHFSAMLRDEIGGKAVNLLPSAEVQDIYRIVSDKVNEVLKQDLINGTSTT 610
Query: 788 PDALRAK-------------------LLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
+ + K L V+R + K++VMT YG G RDQ+
Sbjct: 611 LETVTDKKTGEITERTKYGTKVMAQWWLEHGVNRGVTKRSVMTLAYGSKEFGFRDQVLSD 670
Query: 829 LKERGAPMEEAELF----GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ-- 882
+ + ++F A+ Y AK+ A+ AA M+WL AK++A+E +
Sbjct: 671 TIQPAIDNGKGDMFLNPNQAAGYMAKLIWNAVSVTVVAAVEAMNWLKSAAKLLAAEVKDK 730
Query: 883 ----------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR----------ETEKV 922
V W TP G PV Q YR V+T L ++ L + +T +
Sbjct: 731 KTDTVLRGRCAVHWVTPDGFPVWQEYRV----PVQTRLNLMFLGQFRIQPTINTHKTSGI 786
Query: 923 MVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGLT-FAGVHDSYWTHACDVDEMNRILR 980
+Q + PNFVHS DGSH+ T V A K G+T FA +HDS+ T+ D + + +R
Sbjct: 787 DAHKQESGIAPNFVHSQDGSHLRKTVVHAYEKYGVTSFALIHDSFGTNPADAGALFKAVR 846
Query: 981 EKFVELYEMPIFENLLDSFQKSFPKLV-------FPPLPERGDFDLREVLGSPYFF 1029
E VE YE N+L+ F++ F + P +P G DL+E+L S + F
Sbjct: 847 ESIVETYEN---SNVLEEFREQFMDQLHESQLEKMPEIPAMGGLDLQEILKSDFAF 899
>gi|448937046|gb|AGE60589.1| RNA polymerase [Pelagibacter phage HTVC019P]
Length = 814
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 242/862 (28%), Positives = 395/862 (45%), Gaps = 89/862 (10%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMA 255
QV+ E + E N + + E++ Y K + PL AIA+ E
Sbjct: 13 QVQTEKMSAELGKNRTNKRRLSHIEREEESVTSYGKVIVANTIRPLAIAIAEWVELALPE 72
Query: 256 KH-KVAYA-PYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313
H K A Y Q+ ++A+IT ++ + + A +G IE E+ +
Sbjct: 73 VHSKTPIALKYISQVDPKIVALITAKHVINTIT-----NTKNLTACAITLGGRIETEISL 127
Query: 314 HKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF 373
F + ET K+ ++ S ++ KLR+ K V R +
Sbjct: 128 KNFKGLNPELYETVKKDLDK--RSWNYNYKRRKLRESA-------KRDEVMR-------W 171
Query: 374 KPWGQDARAKVGSRVIELLTQ-TAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSK 432
+ W R VG ++ LL + T I+ +Q H +TV +
Sbjct: 172 EEWTTTERLHVGMELVSLLIESTGLIEIATEQ-------------HKHKTVKVIKQTAKT 218
Query: 433 KYGVIECNPLVLKGLERTARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQ 491
K + N ++ P Y+ M++PP H + S + KQ
Sbjct: 219 KDWIDNRNKF---------NELLNPEYLMMVMPPKSVVDGKVTGHGYWTSEMPELDLVKQ 269
Query: 492 QRDTVKRTPKKQLEP-VFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPL 550
+ + + P V A++ + +T +++N +LSV+ W G + + ++ L
Sbjct: 270 KGKKFNKEMENCAMPEVTTAVNLMQSTAYKINPFILSVMQNAWDKGLSIGGMPPIKNLDL 329
Query: 551 PEKP---ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHN 607
P KP ET EA L+K++ V EN S+R + +A K KD Y+P
Sbjct: 330 PNKPHDIETNPEA-LKKFKKDSVIVHTENNRMVSKRLLYAKIIWLAEKFKDYATLYFPLQ 388
Query: 608 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS--GLHWLKIHLANLYAGGVDKLS 665
+DFRGRAY + +LN+ + + +L F++G+ + K G+ WL +H +N++ G DK+S
Sbjct: 389 LDFRGRAYCVPAFLNYQSINGAKALLNFSQGKAITKENRGVFWLAVHGSNMW--GNDKVS 446
Query: 666 HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISH 725
E R ++ ++L I + A+ P+ R+W A++PFQ LA C + + F+SH
Sbjct: 447 FEDREKWSYDNLQWITECAEDPIANRQW-EDADNPFQFLAFCDEWKR--YQETGDGFVSH 503
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
IPV+ DGSCNGLQ Y+ L +D + VN + E P D+Y +A V+ ++ A
Sbjct: 504 IPVNVDGSCNGLQIYSLLLKDKVAGKLVNCLPSEIPQDIYQLVANEVIKTLKVKASEG-- 561
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL---KERGAPMEEAELF 842
D L K L V R K+ +MT YG T D + L K++G ++F
Sbjct: 562 ---DPLAQKWLDYGVKRSTCKRPIMTICYGSTRYSCTDFVVEDLTKRKDKGEMHPFDDMF 618
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
+ Y +K+ ++GE ++AR M +L AK+I+ E P+ W TP+G PV Q Y ++
Sbjct: 619 KPATYLSKIIWASIGENLKSARVGMDYLQNNAKVISKEGIPIHWVTPVGFPVFQYYPEMK 678
Query: 903 RHTVKTSL-------QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
V++ L QI +ET+K+ R R A N+VHSLD + M+ T + G
Sbjct: 679 SKRVRSHLMGEVFAPQIKEETKETDKL---RSRNAVAANYVHSLDSACMIKTVNIAKAKG 735
Query: 956 L-TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV------- 1007
+ F VHDS+ THACDVD++N +RE FVE + ++LL F++ +L+
Sbjct: 736 IDNFCNVHDSFATHACDVDKLNVSIREAFVETFS----KDLLGKFKEDVGRLLDEETRGK 791
Query: 1008 FPPLPERGDFDLREVLGSPYFF 1029
P +P+ GD +L + S +FF
Sbjct: 792 LPTIPDSGDLELDLLYQSKFFF 813
>gi|441463685|gb|AGC35961.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph08]
gi|441463740|gb|AGC36015.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph09]
Length = 812
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 220/795 (27%), Positives = 365/795 (45%), Gaps = 80/795 (10%)
Query: 268 LPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETK 327
+ +D +T+ + + A V A + G +E E+R KF ++ K +
Sbjct: 66 IASDKAIFLTLRCIFNAFQNSRQGKEATPVSIANVCGRLVEDEIRFSKFQQQFKAYYQ-- 123
Query: 328 NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSR 387
+ D + + + + +T +D +KPW R VG R
Sbjct: 124 ---EIAADFKRKGSKDYRYMHRVLTHSANSH-----------EDGWKPWSVSERVDVGMR 169
Query: 388 VIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL 447
+++L+ Q H E K + VI L+ +
Sbjct: 170 LLDLVVQ-----------------------HTDLIEKGEYKRNGQTIIVIRPTDATLEFI 206
Query: 448 ER--TARHMVIP-YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-Q 503
++ ++ P MP ++ P WT D+G ++ P+ H + K+ ++
Sbjct: 207 QKYDEVAELIHPRQMPCIIKPDDWTAIDQGG-YYSPTLRSACHLVLTRHPKQKKILRRAD 265
Query: 504 LEPVFEALDTLGNTKWRVNNRVLSVLDRIWS----CGGRLADLVDRNDVPLPEKPE---T 556
L V +A++ + +W+VN +VL VL +W+ G ++ + ++ P+ +K + T
Sbjct: 266 LSSVMQAVNGAQSVEWKVNKKVLEVLKLVWAKNLQVGVPSSEKLVPSECPIKDKKKEEMT 325
Query: 557 EDEAQL-RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
+ EA + +W+ + V +ER + I L A + + F+Y +DFRGR Y
Sbjct: 326 DAEALVFMEWKRQASEVYTREKERIGKCFQITSILRAANEYSLYDRFWYVWQLDFRGRLY 385
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
+ G D+ +G+L FA G+ LG G++WLK+HLAN Y G DK ++ R+ + +
Sbjct: 386 TATSGFSPQGPDVAKGLLTFAGGKPLGSRGVYWLKVHLANRY--GFDKGHYDERVQWVDQ 443
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEA----LRSSSPETFISHIPVHQD 731
+ +A P+ W A+ P+Q LA E L PE ++S++P+ D
Sbjct: 444 RHNAFIAAAADPIAHIDIWKDADKPYQFLAALFEYKEMHDGRLVGKRPEEYLSYLPIGLD 503
Query: 732 GSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA- 790
GSCNGLQH++A+ RD +G AA NLVA E+P D+Y+ +A L +++++ V A
Sbjct: 504 GSCNGLQHFSAMLRDPVGGAATNLVAAERPNDIYAQVAQVCLDKVKKESIAGSDVSAVAT 563
Query: 791 ----LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASC 846
+ ++ RK+ K+ VMT YG T R + + E + A S
Sbjct: 564 EWVSFAVRYGDGKMPRKVAKRPVMTMPYGST----RQSCTQYIFEAVNELAPAHFTSLSA 619
Query: 847 YAAKVTLT-----ALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKL 901
+ A LT ++GE+ AAR M WL +CA +++ + + W T G V R++
Sbjct: 620 FLASSALTPYLWNSIGEVVVAARQGMDWLQKCAGVMSKQGLGITWRTKDGFIVYMFEREM 679
Query: 902 GRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT- 957
+ T L R TE + QR PNFVHS DG+H+ T + ++AG+T
Sbjct: 680 EVVRIDTVLGGRYQARVGNYTETLDKNGQRNGVAPNFVHSQDGAHLRATILKAQEAGITS 739
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD--SFQKSFPKLVFPPLPERG 1015
A +HD Y THA D D ++R++RE FVE Y F+ L+ +Q+ K P LP+ G
Sbjct: 740 LALIHDDYGTHAADTDTLHRLIRESFVEQYTE--FDPLVSFRDWQEMIGKEKLPELPKYG 797
Query: 1016 DFDLREVLGSPYFFN 1030
D D+ EVL SP+FF
Sbjct: 798 DLDITEVLKSPFFFG 812
>gi|194100420|ref|YP_002003793.1| gp1 [Klebsiella phage K11]
gi|193201359|gb|ACF15837.1| gp1 [Klebsiella phage K11]
Length = 906
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 228/836 (27%), Positives = 392/836 (46%), Gaps = 133/836 (15%)
Query: 268 LPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETK 327
+ ++ +A++T+ ++G L + +A + Q + +G A+E E R + E+ + K
Sbjct: 129 VSSEAIALLTIKVVLGTLT---DASKATIQQVSSQLGKALEDEARFGRIREQEAAYFK-K 184
Query: 328 NKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR-----RIVKGQDDFKPWGQDARA 382
N D+ L K+V + KK + V + + G D++ W D +
Sbjct: 185 NVADQ--------------LDKRVGHVYKKAFMQVVEADMISKGMLGGDNWASWKTDEQM 230
Query: 383 KVGSRVIELLTQ-TAYIQSPADQLADAPPDIF--------PAFTHALRTVSKETKGGSKK 433
VG++++ELL + T ++ +++AD D+ PAF L SK+
Sbjct: 231 HVGTKLLELLIEGTGLVEMTKNKMADGSDDVTSMQMVQLAPAFVELL----------SKR 280
Query: 434 YGVIE-CNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGA 489
G + +P+ + P +VPP W G ++ + P ++RTH
Sbjct: 281 AGALAGISPM---------------HQPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSK 325
Query: 490 KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI--WS-CGGRLADLVDRN 546
K ++R + V++A++ NT W+VN +VL+V++ I W C ++R
Sbjct: 326 K----ALRRYADVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEIVNWKHCPVGDVPAIERE 381
Query: 547 DVPLPEKPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
+ LP +P+ D E + W+ + V ++++ R S+R +E ++ A K + + ++
Sbjct: 382 E--LPPRPDDIDTNEVARKAWRKEAAAVYRKDKARQSRRLSMEFMVAQANKFANHKAIWF 439
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
P+N+D+RGR Y + + N G+D+ +G+L A+G+ +G G +WLKIH AN GVDK+
Sbjct: 440 PYNMDWRGRVYAVSMF-NPQGNDMTKGMLTLAKGKPIGLDGFYWLKIHGAN--CAGVDKV 496
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
R+ F E + +I SA PL WW + + PF LA C +
Sbjct: 497 PFPERIKFIEENEGNILASAADPL-NNTWWTQQDSPFCFLAFCFEYAGVKHHGL--NYNC 553
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV------------ 772
+P+ DGSC+G+QH++A+ RD++G AVNL+ + D+Y +A +V
Sbjct: 554 SLPLAFDGSCSGIQHFSAMLRDSIGGRAVNLLPSDTVQDIYKIVADKVNEVLHQHAVNGS 613
Query: 773 LVIIQRDAQRDPAVFPD-------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
++++ A ++ F + L A+ L V RK+ K++VMT YG G R Q+
Sbjct: 614 QTVVEQIADKETGEFHEKVTLGESVLAAQWLQYGVTRKVTKRSVMTLAYGSKEFGFRQQV 673
Query: 826 KRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
+ E +F A+ Y AK+ A+ AA M+WL AK++A+E
Sbjct: 674 LEDTIQPAIDNGEGLMFTHPNQAAGYMAKLIWDAVTVTVVAAVEAMNWLKSAAKLLAAEV 733
Query: 882 Q------------PVRWTTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRET 919
+ + W TP G PV Q YRK LG+ VK + +
Sbjct: 734 KDKKTKEVLRKRCAIHWVTPDGFPVWQEYRKQNQARLKLVFLGQANVKMTYNT----GKD 789
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNR 977
++ +Q + PNFVHS DGSH+ MT V + G+ +FA +HDS+ T D + +
Sbjct: 790 SEIDAHKQESGIAPNFVHSQDGSHLRMTVVHANEVYGIDSFALIHDSFGTIPADAGNLFK 849
Query: 978 ILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFF 1029
+RE V+ YE + + D F + P +P +GD +LR++L S + F
Sbjct: 850 AVRETMVKTYEDNDVIADFYDQFADQLHESQLDKMPAVPAKGDLNLRDILESDFAF 905
>gi|387941914|gb|AFK13493.1| DNA-directed RNA polymerase [Yersinia phage YpsP-G]
Length = 903
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 250/915 (27%), Positives = 416/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 66 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 113
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 114 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 161
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 162 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 206
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + + Q A ++
Sbjct: 207 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVVGQDSETIEL 266
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 267 TPEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 302
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 303 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 358
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE +T EA L W+ V ++++ R S+R
Sbjct: 359 NVITKWKHCPVEDIPAIEREELPMKPEDIDTNPEA-LTAWKRAAAAVYRKDKARKSRRIS 417
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 418 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 476
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E++ ++I A PLE WW + + PF LA
Sbjct: 477 YYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLE-NTWWAEQDSPFCFLA 533
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ D +G AVNL+ D+Y
Sbjct: 534 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIY 591
Query: 766 SGIAARVLVIIQRD----AQRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V VI+Q D + D AL + L V R + K
Sbjct: 592 GIVAKKVNVILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 651
Query: 807 QTVMTSVYGVTYIGARDQIK----RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + + G + + A+ Y AK+ A+ A
Sbjct: 652 RSVMTLAYGSKEFGFRQQVLEDTIQPVIDSGKGLMFTQPNQAAGYMAKLIWEAVSVTVVA 711
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 712 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 767
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 768 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 827
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 828 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 887
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +L+++L S + F
Sbjct: 888 GNLNLQDILKSDFAF 902
>gi|37956803|gb|AAP34070.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 251/915 (27%), Positives = 409/915 (44%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L + V AA I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACLTSAD---NTTVQAAASAI 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +V P WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVLPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 339 NVITKWKHCPVENIPAIEREELPMKPENIDMNPEA-LIAWKRAAAAVYRKDKARKSRRIS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 457 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIIACAKSPLE-NTWWAEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH +A+ RD +G AVNL+ E D+Y
Sbjct: 514 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHXSAMLRDEVGGRAVNLLPSETVXDIY 571
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 572 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYSVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 747
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 748 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 808 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 868 GNLNLRDILESDFAF 882
>gi|37956700|gb|AAP33969.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 247/914 (27%), Positives = 410/914 (44%), Gaps = 145/914 (15%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNITVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P ++P WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVIPSKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYENVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
+ I W C ++R ++P+ K + L W+ V ++++ R S+R ++
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPKDIDMNPEALTAWKRAAAAVYRKDKARKSRRINL 398
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 399 EFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEGY 457
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + PF LA
Sbjct: 458 YWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQNSPFCFLAF 514
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 515 CFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 767 GIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVKQ 807
+A +V I+Q DA + D AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKIKLGTKALAGQWLAYGVTRSVTKR 632
Query: 808 TVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAA 863
+VMT YG G R Q+ + + +F A+ Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 864 RGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRLN 748
Query: 912 ILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TFA 959
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +FA
Sbjct: 749 LMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFA 808
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPERG 1015
+HDS+ T D + + +RE V+ YE + + D F + P LP +G
Sbjct: 809 LIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKG 868
Query: 1016 DFDLREVLGSPYFF 1029
+ +LR++L S + F
Sbjct: 869 NLNLRDILESDFAF 882
>gi|37956752|gb|AAP34020.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 247/914 (27%), Positives = 410/914 (44%), Gaps = 145/914 (15%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNITVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P ++P WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVIPSKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYENVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
+ I W C ++R ++P+ K + L W+ V ++++ R S+R ++
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPKDIDMNPEALTAWKRAAAAVYRKDKARKSRRINL 398
Query: 587 ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 399 EFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEGY 457
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + PF LA
Sbjct: 458 YWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQNSPFCFLAF 514
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 515 CFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 767 GIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVKQ 807
+A +V I+Q DA + D AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKIKLGTKALAGQWLAYGVTRSVTKR 632
Query: 808 TVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAA 863
+VMT YG G R Q+ + + +F A+ Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 864 RGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRLN 748
Query: 912 ILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TFA 959
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +FA
Sbjct: 749 LMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFA 808
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPERG 1015
+HDS+ T D + + +RE V+ YE + + D F + P LP +G
Sbjct: 809 LIHDSFGTIPADAANLCKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKG 868
Query: 1016 DFDLREVLGSPYFF 1029
+ +LR++L S + F
Sbjct: 869 NLNLRDILESDFAF 882
>gi|315518929|dbj|BAJ51806.1| RNA polymerase-like protein [Ralstonia phage RSB2]
Length = 863
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 229/834 (27%), Positives = 382/834 (45%), Gaps = 110/834 (13%)
Query: 255 AKHKVAYAPYFDQLPADMMAVITMHKLM-GLLMTGGEHGRARV---VQAACIIGDAIEQE 310
A + A A + Q+ + A IT+ ++ + T G G ++V + IG +E E
Sbjct: 80 AGRRHAAAKFLSQVSVERAAFITLRCILNAMTQTSGGSGSSKVPTVISVTMAIGHDMEDE 139
Query: 311 VRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ 370
R + ++ +K + + + ++ D K+ AV ++
Sbjct: 140 ARFGRMRDENQKHFDARIAP---------------AIAQRSGDHFKRAYARAVEVAMQDA 184
Query: 371 ---DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
D++ W RA VG +++E++ Q+ L + +E
Sbjct: 185 GELDEWDGWSNQERAAVGLKLVEIVIQST----------------------GLIELKQEH 222
Query: 428 KGGSKKYGVI-ECNPLVLKGLER---TARHMVIPYMPMLVPPVKWTGYDKGAHFFL--PS 481
KG K++ V+ E + L + T M Y P +VPP W + G ++F +
Sbjct: 223 KGDPKRHRVVVEITDQYAEWLAKRTHTLADMTPAYAPCVVPPKPWINHRAGGYWFNEDKA 282
Query: 482 YVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD 541
+M G+ ++ +R L V +L+ + NT W +N RVL V +++
Sbjct: 283 PLMLVRGSPKRN---RRYRDVDLTKVLASLNAIQNTPWTINKRVLEVAEQVAQWENPPVK 339
Query: 542 LVDRNDVPLPEKPE-----TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKM 596
+ + V L EKPE EDEA L++W+ + ++ + R S+R +E L ARK
Sbjct: 340 KMPSH-VTL-EKPERLDEMDEDEAVLKQWKKQAALAYRKEKARRSRRYQLETSLFQARKY 397
Query: 597 KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
E ++P+++DFRGR Y + + G DL + +L FA+ +G G WL++HLAN
Sbjct: 398 AGFERLWFPYSLDFRGRIYAATKF-SPQGQDLDKALLLFADAPEIGVGGEFWLRMHLAN- 455
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
GG+DK + E R+ +T+++ + I A PL+ W A+ PF LA ++
Sbjct: 456 -TGGMDKATMEERIQWTKDNEEMILAVAANPLDCLWWATDADSPFCFLAAAFEYAN-WKA 513
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P ++ + + DGSC+G+QH++A+ RD +G AVNL+ EKP+D+Y ++ +V ++
Sbjct: 514 IGP-SYRCGLAIAFDGSCSGIQHFSAMLRDEIGGKAVNLIPSEKPSDIYRIVSDKVNKVL 572
Query: 777 QRDAQRDPAVFPDALRAK-------------------LLLSQVDRKLVKQTVMTSVYGVT 817
+D A + D + K + +V R + K++VMT YG
Sbjct: 573 LKDLADGTADYTDTITDKETGEITERPRRGTKTLARHWMDYKVTRSVTKRSVMTLPYGSK 632
Query: 818 YIGARDQIKRRLKERGAPMEEAELFGA---SC-YAAKVTLTALGEMFQAARGIMSWLGEC 873
G DQ+ + + A E + F A +C Y A + ALG AA M+WL +
Sbjct: 633 KYGFTDQLFEDIVQ-PANDERPDTFPAPSEACSYMAGLIWDALGTTVVAAVEAMAWLQKV 691
Query: 874 AKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL-----QILTLQRETEKVMVK--- 925
A I+ E P W TP G PV Q YRK H + T + +T+ + + K
Sbjct: 692 AVILVGEGMPCHWVTPAGFPVWQEYRKTDAHRIDTVICGNIRITMTVNKSESQGGQKPLD 751
Query: 926 --RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREK 982
+Q+ PNFVHS+D SHMM+T +A + G+ FA +HDS+ T M + +RE
Sbjct: 752 RHKQQNGISPNFVHSMDASHMMLTCLAASQNGVQHFATIHDSFGTAPGLAGVMFQTVREV 811
Query: 983 FVELYEMPIFENLLDSFQKSFPKLV-------FPPLPERGDFDLREVLGSPYFF 1029
VE Y +++ F +F L+ P P +G+ DL ++L S Y F
Sbjct: 812 MVETYSS---RDVIQDFYTTFDSLLSPDARDKIPAFPAKGNLDLSQILSSQYCF 862
>gi|431811028|ref|YP_007238103.1| putative RNA polymerase [Xanthomonas phage CP1]
gi|394556921|dbj|BAM29105.1| putative RNA polymerase [Xanthomonas phage CP1]
Length = 804
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 244/870 (28%), Positives = 388/870 (44%), Gaps = 100/870 (11%)
Query: 194 MRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253
+ QV++E +A+ + + E+ +A N PY ++++ + PL DA+ EQ+ R
Sbjct: 2 LSQVELELQAYSFGKERMEKAIARNEEKGVADNNPYAQAVYRRFVLPLADALKAEQQADR 61
Query: 254 MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313
K A+ + + + A + + + LM G A ++ + +G A+ E+ +
Sbjct: 62 GKGRKPAHLKLLEAVDPEPSAFVAVRAALVHLM-GNPADNALILLSR--VGSAVYHELLL 118
Query: 314 HKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDF 373
F K + G N E+ +L ++ K + A R +V
Sbjct: 119 RDFDTLDPKLFHSLAN----GAGRNMYAGERYRL-----EVFKAEG--ARRGVV-----L 162
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKK 433
W +VG+ + L + QLA +K + +
Sbjct: 163 PEWEMADIERVGAWFSDQLATLGMLSISTHQLA--------------------SKHSTME 202
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF-----LPSYVMRTHG 488
+ E ++ G+ ++P + P W YD+G L Y ++TH
Sbjct: 203 ATLSEEVTELIDGIRDEVVENAAYFLPCVEKPKDWESYDEGGWHTDQMRRLMPYAIKTHA 262
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR--LADLVDRN 546
+ L L+TL T+WR+N R+LSV+ R+ GG+ L +++ +
Sbjct: 263 GVRHL-----LGGADLSKELACLNTLQATRWRINRRILSVMSRL---GGKINLGEVLAQG 314
Query: 547 DVPLPEKP----ETEDEAQL--------RKWQ-----WKVRNVKKENR-ERHSQRCDIEL 588
+ P P++P E +E+Q+ R W+ W R K+ + R+ Q D
Sbjct: 315 EEPRPDRPAWLLEKMEESQMDEDQLQEFRTWKRLMALWHARKKKRVTKWGRYRQAMD--- 371
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLH- 647
VA + D E Y+ + DFRGR Y M ++ GSDL + +LEFAEG+ L G
Sbjct: 372 ---VATRFADYENLYFVYFCDFRGRKYAMTTGVSPQGSDLQKALLEFAEGKPLHTKGAKD 428
Query: 648 WLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC 707
W I AN Y G DK+ R+ + H + I +A P WWL+A P Q LA C
Sbjct: 429 WFCITGANRY--GYDKVDLGSRIEWVHTHHEFILSAARDPANSE-WWLQASKPLQFLAWC 485
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
+ + E+F SH+ DGSCNGLQ+++A+ RD +G A NLV +P D+Y
Sbjct: 486 MEYRDW--QEQGESFESHLSAGMDGSCNGLQNFSAMLRDEVGGEATNLVPLPQPQDIY-- 541
Query: 768 IAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI-K 826
RV + ++ + PA P+ R + L V+R +VK++VMT YG T D I K
Sbjct: 542 --GRVGKVTEQLLLQVPAD-PEGYRDRWLAHGVNRSVVKRSVMTLPYGSTRFSCADFILK 598
Query: 827 RRLKERGAP-MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA-KIIASENQPV 884
L E P E A+ Y +K A+G++ AR M WL A ++I S +
Sbjct: 599 DYLNEGLVPEFNTTEYAKAAQYLSKFVWKAIGDVVVKAREAMDWLQVSASELIKSGESHI 658
Query: 885 RWTTPLGLPVVQPYRKLGRHTVKTSL---QILTLQRETEKVMVKRQRTAFPPNFVHSLDG 941
WTTP G PV+Q Y + ++T L L + ++ R + PNFVHSLD
Sbjct: 659 FWTTPTGFPVMQVYWEEQARQIETKLCGRTKLWVWNAVDRPDKCRHKNGISPNFVHSLDA 718
Query: 942 SHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQ 1000
SH+ AC G+T VHD + TH D + ++RE+FV +Y N + FQ
Sbjct: 719 SHLTAVTNACTALGITDLHMVHDDFGTHCADAPALYSVIREEFVHMYTS---HNPMQEFQ 775
Query: 1001 KSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ +P PLP G D+++V+ SP+FF+
Sbjct: 776 QRYPHCT-GPLPSPGTLDIQDVMESPFFFS 804
>gi|21425671|emb|CAC95023.1| mitochondrial RNA polymerase [Nicotiana tabacum]
Length = 173
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/173 (77%), Positives = 146/173 (84%), Gaps = 18/173 (10%)
Query: 876 IIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKV------------- 922
IIA EN PVRWTTPLGLPVVQPYRKLGRH +KTSLQILTLQRET+KV
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVALHPLTCLLPFCF 60
Query: 923 -----MVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNR 977
MVKRQRTAFPPNFVHSLDGSHMMMTA+AC+++GL+FAGVHDSYWTHA DVD+MN+
Sbjct: 61 FFIDVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNK 120
Query: 978 ILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
ILREKFVELY+ PI ENLL+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 121 ILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 173
>gi|326633044|ref|YP_004306655.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
gi|301170517|emb|CBV65202.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
Length = 883
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 255/918 (27%), Positives = 412/918 (44%), Gaps = 153/918 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N+ + L+ LP M + WF+ +
Sbjct: 46 MGEVRFRKMFERQLK----AGEIADNDATKPLITTL-------LPKMIARINSWFKEV-- 92
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
Q +C K A+ + + + +A IT+ + L T ++ + V +A I
Sbjct: 93 -----QAKC--GKRPTAFQ-FLQGIKPEAIAYITIKTTLARL-TSMDNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + +
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVI 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGESWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WT
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTSIS 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT WR+N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYADVYMPEVYKAVNIAQNTAWRINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ + W C ++R ++P+ PE +T EA L W+ V ++++ R S+R
Sbjct: 339 NVVTKWKHCPVDYIPTIEREELPMKPEDIDTNPEA-LASWKRAAAAVYRKDKARKSRRMS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHRAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E++ ++I A PLE WW + + PF LA
Sbjct: 457 FYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENILACAKSPLENT-WWSEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC G+QH++ + RD +G AVNL+ E D+Y
Sbjct: 514 FCFEYAGGQHHGL--SYNCSLPLAFDGSCFGIQHFSVMLRDEVGGRAVNLLPSETVQDIY 571
Query: 766 SGIAARVLVIIQRD----AQRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q D + D L + L V R + K
Sbjct: 572 GIVAKKVNEILQVDMINGTDNEVVTVTDDKTGEIYEKIKLGTKELAGQWLAYGVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ A+ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTHPNQAAGYMAKLIWEAVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A E + V WTTP G PV Q Y+K V+T L
Sbjct: 692 AVEAMNWLKSAAKLLAVEVKDRKTGEILRKRCAVHWTTPDGFPVWQEYKK----PVQTRL 747
Query: 911 QILTL-----------QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-T 957
++ L R++E + +Q + PNFVHS DGSH+ T V A K G+ +
Sbjct: 748 NLIFLGQFRLQPTINTNRDSE-IDAYKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIDS 806
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYE-----MPIFENLLDSFQKS-FPKLVFPPL 1011
FA +HDS+ T D + + +RE V YE + D KS K+ P L
Sbjct: 807 FALIHDSFGTIPADAANLFKAVRETMVATYESCDVLADFYAQFADQLHKSQLDKM--PVL 864
Query: 1012 PERGDFDLREVLGSPYFF 1029
P +G+ +L+++L S + F
Sbjct: 865 PSKGNLNLQDILKSDFAF 882
>gi|197935879|ref|YP_002213715.1| DNA-directed RNA polymerase [Ralstonia phage RSB1]
gi|197927042|dbj|BAG70384.1| DNA-directed RNA polymerase [Ralstonia phage RSB1]
Length = 805
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 234/842 (27%), Positives = 385/842 (45%), Gaps = 94/842 (11%)
Query: 224 APNLPYMKSLFLGWFEPLRDAIAK--EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
A N PY +L+ + PLRD I E + + +H A+ Q+ + A I +
Sbjct: 21 ADNNPYATALYRQYVLPLRDLITSTIELHKTKAGRHG-AHVSLLKQVDPAVAAYIAVRTA 79
Query: 282 MGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVT 341
+ +L+ G + AR + + IG +I++EV + F E D V+
Sbjct: 80 ITVLLAGAANS-ARAL--SNHIGLSIQREVTLAGF-------------EISNPDLFWEVS 123
Query: 342 TEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSP 401
+ ++ K + + A R + + WG R ++GS ++E L ++
Sbjct: 124 HDLDRRHSKASQHRYAALMGAAR---NKEIELPMWGVGDREQIGSWMLETLRTLGMVE-- 178
Query: 402 ADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR--HMVIP-Y 458
H + +G ++ + + ++R + + +P +
Sbjct: 179 -------------VLHH-----KEWNRGKMRERIEASLSEDAMHTVQRISGLVELTMPLH 220
Query: 459 MPMLVPPVKWTGYDKGAH------FFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALD 512
MP + PP WT ++G + + +P V+ H + + V A++
Sbjct: 221 MPCIEPPKPWTSLNEGGYHSKEMRYIMPHCVVMRH--VKSPALLDELRAHNWGTVLTAIN 278
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP---------ETEDEAQLR 563
L T W++N +L + + + + ++V + + P P KP E DE QLR
Sbjct: 279 ALQQTAWQINGEMLQTILTV-AKHHNMDEIVSQAESPKPGKPDWLADDMKKEDMDEDQLR 337
Query: 564 KWQWKVRNVKKENRERHSQRCD---IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPY 620
++ R + + + +R Q VA +MKD E Y+ + DFRGR Y
Sbjct: 338 EFHMWKREMAQWHTDRKLQGTKWGRFYTATRVANEMKDYESIYFTYQADFRGRLYAQTTG 397
Query: 621 LNHLGSDLCRGILEFAEGRTLGK-SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDD 679
++ GSDL + +L FA+G LG + + W KI+ AN + GVDK+ + R+A+ + H
Sbjct: 398 VSPQGSDLQKSLLRFAKGLPLGTDAAVQWFKINGANRF--GVDKVPYAERIAWVDEHAAR 455
Query: 680 IFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQH 739
I AD P+ W +A+ P Q LA R P F+S I V DGSCNGLQH
Sbjct: 456 IIAMADDPVSNFGW-AEADSPLQFLAWAKEFARWKRD--PANFVSQIAVGMDGSCNGLQH 512
Query: 740 YAALGRDTLGAAAVNLVAREKPADVYSGIA----ARVLVIIQRDAQRDPAVFPDALRAKL 795
++A+ RD +G A NL+ KP D+Y+ +A AR+ +I D F +L
Sbjct: 513 FSAMLRDDVGGRATNLLPGAKPNDIYAQVATVTQARLAALILPDDDARGREF-----QRL 567
Query: 796 LLSQ-VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-AP-MEEAELFGASCYAAKVT 852
L ++RKLVK++VMT YG T D I + +G AP E+A+ A+ + +
Sbjct: 568 WLKHGINRKLVKRSVMTLPYGSTRFSCADFIVQDYLRKGLAPEFEQAQYASAASWLSHHV 627
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASENQP-VRWTTPLGLPVVQPYRKLGRHTVKTSL- 910
++G++ A+ M+WL +C+K+I ++ P +RWTTP G VVQ Y + + + L
Sbjct: 628 WASIGQVVVASAEAMAWLQKCSKVIMAKGHPQIRWTTPSGFSVVQVYNGYEEYRISSRLL 687
Query: 911 --QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHDSYWT 967
L ++ ++ + PNFVHS+D SHM + V C G+T FA +HD Y
Sbjct: 688 GGMRLKVRSAIDEPDSNLHKNGIAPNFVHSMDASHMALCIVDCVGKGITDFAMIHDDYGV 747
Query: 968 HACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPY 1027
HA + + +R+ FV +YE + + F S+ L P P+ G +REVL SPY
Sbjct: 748 HAANAPVLFESIRQTFVSMYEG---NDPISDFAGSYDGL--PAQPKAGKLAIREVLNSPY 802
Query: 1028 FF 1029
FF
Sbjct: 803 FF 804
>gi|282857708|ref|ZP_06266917.1| DNA-directed RNA polymerase [Pyramidobacter piscolens W5455]
gi|282584378|gb|EFB89737.1| DNA-directed RNA polymerase [Pyramidobacter piscolens W5455]
Length = 868
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 196/624 (31%), Positives = 305/624 (48%), Gaps = 65/624 (10%)
Query: 458 YMPMLVPPVKWTGYDKGAHFF-----LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALD 512
Y+P+ +PP WT G ++ LP R +++ + P+ Q VFEA++
Sbjct: 259 YLPLPIPPRHWTNTQNGGYWTVYGGQLPLVKNRNEAYQEE---ILNQPE-QFATVFEAVN 314
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET-------------EDE 559
+T WR+N RV +VL + G +A L + +PLP P+ +
Sbjct: 315 AAQDTAWRINQRVYTVLTELVHEGKAVAGLPSADKLPLPNCPKCGAKIVEGVKHECLQSP 374
Query: 560 AQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
L W+ R V ++N + QR + + + +A + ++E FYY + DFRGR YP+
Sbjct: 375 EVLDSWKGLARAVYRKNAKAIGQRLRLGMSMEIAALLLNDERFYYVYQTDFRGRLYPVGN 434
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDD 679
L G+D +GILEFA+G LG G WL +H+AN + G DK+ ++ R+ + +++
Sbjct: 435 -LTPQGTDWEKGILEFADGVPLGAHGAKWLAVHVANCW--GNDKVDYDERVQWAKDNTQW 491
Query: 680 IFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQH 739
I D A++PL R W +A+ PF LA CI R + ++SH PV DGSC+G+QH
Sbjct: 492 IRDCANEPLIHREW-TEADSPFMFLAACIEWDGYCREG--DGYLSHTPVGLDGSCSGIQH 548
Query: 740 YAALGRDTLGAAAVN---LVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLL 796
Y+A+ RD +GA A N L + K +D+Y +A + + DA A A A L
Sbjct: 549 YSAMLRDEVGAIATNVKCLPNQHKKSDIYGLVAEEAVKQFREDATGADA--DKAKYAMFL 606
Query: 797 LSQ--VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG--APMEEAELFGASCYAAKVT 852
L+ +DRK+ K+ VMT YG T+ AR+ + L ER + E+ YAA
Sbjct: 607 LAHNLMDRKITKRAVMTLPYGSTFQTAREYVCEALSERTEIEQYDTKEVKSLLMYAATTV 666
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ- 911
A+ ++ + AR M +L A ++A + PV W P G V Q Y +KT LQ
Sbjct: 667 WHAIPKVVKGAREGMKFLKTVANLVAKASTPVAWVAPSGFVVQQSYYLTDMKRIKTRLQG 726
Query: 912 ------------------ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRK 953
+L ++ + +Q + PNF+HSLD SH+M + A +K
Sbjct: 727 SIIVKNKMPCWVASGGAVLLKDSHDSPYINKAKQVSGIAPNFIHSLDASHLMFSVCAAKK 786
Query: 954 AGLT-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV----- 1007
+ +T FA VHDS HA +E +ILRE+F +LY + L D + P L+
Sbjct: 787 SRITSFALVHDSLGVHAGKTEEFAQILREQFWQLYTK--HKPLEDFVEHIKPLLISGDER 844
Query: 1008 -FPPLPERGDFDLREVLGSPYFFN 1030
P +P F ++L + + F+
Sbjct: 845 KLPKIPMINTFCPDDILKAKFLFS 868
>gi|345489940|ref|XP_001599095.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like, partial
[Nasonia vitripennis]
Length = 622
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 153/381 (40%), Positives = 220/381 (57%), Gaps = 22/381 (5%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMR-THGAKQQRDTVKRTPKKQLEPVFEALDTLGNT 517
+P L PP W G + + ++R TH QQ D + KQL P ++L+ LG+
Sbjct: 255 VPSLCPPRPWVSVHSGGYIVTKTDIVRVTHMGNQQWDRLINAQPKQLYPALDSLNQLGSI 314
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK--------PETEDEAQLRKWQWKV 569
W VN VL V +++ G + + +VP P P D + +K
Sbjct: 315 PWAVNTSVLDVAIKVFQNDGSV-----KLNVPQPPSVLAHILSVPIDADPKEKKKINKAK 369
Query: 570 RNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
+K++ E +S CD +LS+A ++E F+ PHN+DFRGR YP+ P+LNHLGSDL
Sbjct: 370 IELKRKKNEMYSLWCDALYRLSLANHFRNEI-FWLPHNMDFRGRVYPIPPHLNHLGSDLA 428
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
R +L FA + LG GL WLK+H NL G + S RL + + +++I DSA+ PL
Sbjct: 429 RSMLVFALKKPLGPKGLDWLKLHTINL-TGFKKRESISERLKYADKIIENILDSAENPLT 487
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
G+ WW +++P+Q LA C+ + +AL+SS+P +++ P+HQDGSCNGLQHYAALGRD +G
Sbjct: 488 GKMWWATSDEPWQTLAACMEIAKALKSSNPTHYMTGFPIHQDGSCNGLQHYAALGRDQIG 547
Query: 750 AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTV 809
A +VNL P DVYS +A V D +R L A +L + RK++KQT+
Sbjct: 548 AQSVNLFPSHFPQDVYSSVATMV------DERRREDASNGNLIANVLEGFIKRKVIKQTI 601
Query: 810 MTSVYGVTYIGARDQIKRRLK 830
MT+VYGVT+ GA+ QI R+LK
Sbjct: 602 MTTVYGVTWFGAKLQIARQLK 622
>gi|344229620|gb|EGV61505.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1100
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 191/665 (28%), Positives = 319/665 (47%), Gaps = 88/665 (13%)
Query: 382 AKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA--FTHALRTVSKETKGGSKKYGVIEC 439
K+ S +++LL +Q P Q + + F F H + + K KYG +
Sbjct: 360 VKLFSIIVKLLVGHCKVQVP--QEFEGETNWFGGNLFHHQIIRLPKS------KYGKLSL 411
Query: 440 NPLVLKGLERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVK 497
NP V ++ + + ++PMLVPP KW D+G + ++ +K
Sbjct: 412 NPYVFYEMKASELQIGFDRLFLPMLVPPKKWVSPDEGGYLNNIKSIISNLNEPAYLLYLK 471
Query: 498 RTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDR-IWSCGGRLA-----DLVDRNDVPL 550
R QL+ ++ L +G+ W ++ +L V + + GG L DL+ + D
Sbjct: 472 RANTSGQLDFLYRNLSYMGSVPWCLDQDMLKVFNTAMEKEGGILGIPPKIDLITKLD--- 528
Query: 551 PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDF 610
K R K + S+R L + +A KD Y PHNVDF
Sbjct: 529 -----------------KSRYSKLMYERQKSKRVKYNLIMKIANAFKDN-IMYLPHNVDF 570
Query: 611 RGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRL 670
RGR YPM L++ D+ R +L+F + LG +GL+WLK LA LY G DKL E R+
Sbjct: 571 RGRVYPMVSVLSYQDEDVTRSLLQFWDPHPLGSNGLNWLKYQLAGLY--GKDKLPMEDRI 628
Query: 671 AFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC---INLTEALRSSSPETFISHIP 727
F + + + + SA P++ + WW++A+ P+Q L +C + ++E S + S +P
Sbjct: 629 EFVDANYNFVLSSARDPMQNK-WWMEADSPWQVLRLCKEFLKISEF--SGDISEYKSRVP 685
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVF 787
+HQDGSCNGLQHYAAL +D+ G AVNL+ E D+Y+ + +L ++ D +
Sbjct: 686 IHQDGSCNGLQHYAALSQDSGGGKAVNLIPSETRQDIYNEVLETILTKVE-----DTPI- 739
Query: 788 PDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE----RGAPMEEAELFG 843
D++ K+ + RK++K+ +MT VYGVT G +Q++ L + +E E +
Sbjct: 740 -DSIIGKI----ITRKVIKRPIMTKVYGVTPHGVIEQLQEELLSHDLSKKLNKQELEFYN 794
Query: 844 AS-----CYAAKVTLTALGEMFQAARGIMSWLGECA-----------------KIIASEN 881
++ A++ +L +F+ + WL + ++ +N
Sbjct: 795 SNRREIVIRIARMIALSLSNVFKNLIVVEDWLYKNTYRVMNTIRLEEVKHKHMDLVKFQN 854
Query: 882 -QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHS 938
+P+ WT+ G P++Q Y K T+ T LQ ++ + + K+ + +Q A PNF+HS
Sbjct: 855 FKPMMWTSMSGFPIIQLYNKKSTKTLSTRLQTFSVSKFDDEGKINITKQLNAVSPNFIHS 914
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LD H+++T C + G+ F VHDS+WT D++ ILR+ F++L+ + L D
Sbjct: 915 LDALHLLLTCAKCEEQGIPFVAVHDSFWTSTEHTDKLAIILRQSFIDLHSSDALKCLYDD 974
Query: 999 FQKSF 1003
+
Sbjct: 975 MTNTL 979
>gi|354544408|emb|CCE41131.1| hypothetical protein CPAR2_301200 [Candida parapsilosis]
Length = 1239
Score = 276 bits (705), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 207/714 (28%), Positives = 321/714 (44%), Gaps = 110/714 (15%)
Query: 373 FKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGS- 431
FK D K+ S +++ + ++ I + +DA D+ FT+ +T S
Sbjct: 420 FKFISDDDFDKLSSILVKSVIESCMISRVNAEGSDAD-DVASGFTNEDFAFHLDTIYVSP 478
Query: 432 -KKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAK 490
K VI NP++ + + + P+L PP W G +KGA+ + +
Sbjct: 479 VKSETVINFNPVLKQKVTSIPVGSNSHHFPLLCPPEPWLGVNKGAYMERNTPFLSGFDQL 538
Query: 491 QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRN-DVP 549
Q R +L+ F+ LD +G T W +N VLSV +++ D+ ++ D
Sbjct: 539 QHRILQNAQHLGKLDSAFKCLDQMGQTAWAINPDVLSVFNQVMELPNGFLDIPPKHCDES 598
Query: 550 LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
K E D LR ++ N+ +R+ + Y+ + D
Sbjct: 599 TKSKQEIIDIKGLRS-NFETVNMLANTFDRNG------------------DMLYHCYVFD 639
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669
FRGR YP+ P L H G DL R + +F G+ LG +G +W+K L +++ D
Sbjct: 640 FRGRVYPLSP-LTHYGGDLTRSLFQFWYGQPLGVNGFYWVKYQLMSVFGNETDCEK---- 694
Query: 670 LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-----SSSPETFIS 724
F ++ + I SA PL WW+KA++PF L+VCI + + L+ S E +I
Sbjct: 695 --FYNHNKEQILASASDPLHNH-WWMKADEPFSALSVCIEIQKILQFVQHGKGSIEEYIC 751
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784
+P+HQDGSCNGLQHYAAL D G AVNLV + DVYS + V I D + +
Sbjct: 752 RLPIHQDGSCNGLQHYAALAADESGGKAVNLVPMDTKQDVYSTVKDIVEQKIIADVE-NR 810
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL--- 841
+ D A +L +DRKL+K+ VMT+VYGVT GA QI +++ + +E
Sbjct: 811 LMGEDRDHAAFMLKILDRKLIKRPVMTTVYGVTLAGASRQILENIEDVVSDYDENPTKRG 870
Query: 842 --------------FGASCYAAKVTLTALGEMFQAARGIMSWLGECA-KIIASEN----- 881
++ Y A+ L+++ E+F A+ + WL E +I+ S N
Sbjct: 871 LYDEVTIDRLRQFNLRSTMYLARKILSSIDELFFNAKQMEKWLVENTRRILTSYNVKTLD 930
Query: 882 -------------------------------QPVRWTTPLGLPVVQPYRKLGR-HTVKTS 909
P+ W + G PV+Q YRK + H+V +
Sbjct: 931 YLQSRTFTSASLTSSLASKALNNWYKTPISYSPISWISASGFPVIQTYRKRQQPHSVTGA 990
Query: 910 LQIL--TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMT-------------AVACRK- 953
L + + +T + ++ A PNF+HSLD SHM MT C
Sbjct: 991 LGSIMQSASNKTAPMDRRKHELAIAPNFIHSLDASHMFMTCDACAEASAEAEPGSECGTG 1050
Query: 954 --AGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPK 1005
AGL FA +HDSYWTH V++++RILR+ FV+L+ ++ + F K K
Sbjct: 1051 PGAGLIFASIHDSYWTHPNHVEKLSRILRQTFVKLHSFDYMTHVRNDFVKQVQK 1104
>gi|269838910|ref|YP_003324580.1| RNA polymerase [Morganella phage MmP1]
gi|265232571|gb|ACY74627.1| RNA polymerase [Morganella phage MmP1]
Length = 883
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 193/628 (30%), Positives = 306/628 (48%), Gaps = 69/628 (10%)
Query: 458 YMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
Y P +VPP W G ++ P+ ++RTH R + R + V++A++
Sbjct: 268 YQPCVVPPKPWVSITGGGYWANGRKPTALIRTH----TRKALYRYEDVYMPEVYKAINYA 323
Query: 515 GNTKWRVNNRVLSVLDRI--WSCGGRLADLVDRNDVPLPEKPETED--EAQLRKWQWKVR 570
T WR+N +VL+V++ + W + D+ + + LP++P+ D E LR W+ +
Sbjct: 324 QETPWRINRKVLAVVNELVKWK-NNPVKDMPSIDKLELPQRPDDIDTNEEALRSWKREAA 382
Query: 571 NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
V +++ +R S+ + L A K +++ Y+P+N+D+RGR Y + P N G+D+ +
Sbjct: 383 AVYRKDEQRKSRYLSMSFALEQANKFSNKKAIYFPYNMDWRGRVYAL-PMFNPQGNDMVK 441
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
G+L A+G+ +GK G +WLKIH AN GVDK++ R+ F E++ D+I A+ PL+
Sbjct: 442 GLLTLAKGKPIGKDGFYWLKIHGAN--TAGVDKVTFPERIKFIEDNHDNIMQCAESPLDN 499
Query: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
WW + + PF LA C + + ++ +P+ DGSC+G+QH++A+ RD +G
Sbjct: 500 L-WWTEQDSPFCFLAFCFEYAQVTKKGL--GWVCSLPIALDGSCSGIQHFSAMLRDDIGG 556
Query: 751 AAVNLVAREKPADVYSGIAARV------LVIIQRDAQRDPAVFPDA--------LRAKLL 796
AVNL+ E D+Y +A +V LVI D D L K L
Sbjct: 557 RAVNLLPSETVQDIYGIVADKVNEALKELVINGTDNYTDTVTDKSTGEIIERYRLGEKEL 616
Query: 797 LSQ-----VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCY 847
Q V R + K++VMT YG G RDQ+ + +F A+ +
Sbjct: 617 ARQWLEFGVTRSVTKRSVMTLAYGSKEYGFRDQVLEDTIRPAIDSGKGAMFTNPSQAASF 676
Query: 848 AAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVV 895
AK A+ AA G M WL AK++A+E + V W TP G PV
Sbjct: 677 MAKRIWEAVSVTVVAAVGAMKWLQSSAKLMAAEVKDKKTKEVLRKRCAVHWVTPDGFPVW 736
Query: 896 QPYRKLGR---HTVKTSLQILTLQRETE---KVMVKRQRTAFPPNFVHSLDGSHMMMTAV 949
Q YRK + H + +ET + +Q + PNFVHS DG+H+ MT V
Sbjct: 737 QEYRKPKQKRVHLMFLGSYYDARMKETSSDCSIDAHKQESGISPNFVHSQDGNHLRMTVV 796
Query: 950 ACRKAG--LTFAGVHDSYWTHACDVDEMNRILREKFVELYE-----MPIFENLLDSFQKS 1002
R+ +FA +HDS+ T DV + + +RE V +YE +E D +S
Sbjct: 797 YAREKYNVESFALIHDSFGTIPADVPNLFKAVRETMVNMYENNDVLADFYEQFADQLHES 856
Query: 1003 -FPKLVFPPLPERGDFDLREVLGSPYFF 1029
K+ P LP +G +L+++L S + F
Sbjct: 857 QLDKM--PALPPKGKLNLQDILKSDFAF 882
>gi|133450|sp|P18147.1|RPOL_BPK11 RecName: Full=DNA-directed RNA polymerase
gi|14985|emb|CAA37330.1| unnamed protein product [Enterobacteria phage K11]
Length = 906
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 213/759 (28%), Positives = 357/759 (47%), Gaps = 115/759 (15%)
Query: 345 EKLRKKVTDLIKKQKLPAVR-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQ-TAYI 398
++L K+V + KK + V + + G D++ W D + VG++++ELL + T +
Sbjct: 188 DQLDKRVGHVYKKAFMQVVEADMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLV 247
Query: 399 QSPADQLADAPPDIF--------PAFTHALRTVSKETKGGSKKYGVIE-CNPLVLKGLER 449
+ +++AD D+ PAF L SK+ G + +P+
Sbjct: 248 EMTKNKMADGSDDVTSMQMVQLAPAFVELL----------SKRAGALAGISPM------- 290
Query: 450 TARHMVIPYMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGAKQQRDTVKRTPKKQLEP 506
+ P +VPP W G ++ + P ++RTH K ++R +
Sbjct: 291 --------HQPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYADVHMPE 338
Query: 507 VFEALDTLGNTKWRVNNRVLSVLDRI--WS-CGGRLADLVDRNDVPLPEKPETED--EAQ 561
V++A++ NT W+VN +VL+V++ I W C ++R + LP +P+ D E
Sbjct: 339 VYKAVNLAQNTPWKVNKKVLAVVNEIVNWKHCPVGDVPAIEREE--LPPRPDDIDTNEVA 396
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
+ W+ + V ++++ R S+RC E ++ A K + + ++P+N+D+RGR Y + +
Sbjct: 397 RKAWRKEAAAVYRKDKARQSRRCRCEFMVAQANKFANHKAIWFPYNMDWRGRVYAVSMF- 455
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
N G+D+ +G L A+G+ +G G +WLKIH AN GVDK+ R+ F E + +I
Sbjct: 456 NPQGNDMTKGSLTLAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNIL 513
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
SA PL WW + + PF LA C + +P+ DGSC+G+QH++
Sbjct: 514 ASAADPL-NNTWWTQQDSPFCFLAFCFEYAGVKHHGL--NYNCSLPLAFDGSCSGIQHFS 570
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARV------------LVIIQRDAQRDPAVFPD 789
A+ RD++G AVNL+ + D+Y +A +V ++++ A ++ F +
Sbjct: 571 AMLRDSIGGRAVNLLPSDTVQDIYKIVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHE 630
Query: 790 -------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
L A+ L V RK+ K++VMT YG R Q+ + E +F
Sbjct: 631 KVTLGESVLAAQWLQYGVTRKVTKRSVMTLAYGSKESLVRQQVLEDTIQPAIDNGEGLMF 690
Query: 843 G----ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRW 886
A+ Y AK+ A+ AA M+WL AK++A+E + + W
Sbjct: 691 THPNQAAGYMAKLIWDAVTVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHW 750
Query: 887 TTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFV 936
TP G PV Q YRK LG+ VK + + ++ +Q + PNFV
Sbjct: 751 VTPDGFPVWQEYRKQNQARLKLVFLGQANVKMTYNT----GKDSEIDAHKQESGIAPNFV 806
Query: 937 HSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFE 993
HS DGSH+ MT V + G+ +FA +HDS T D + + +RE V+ YE +
Sbjct: 807 HSQDGSHLRMTVVHANEVYGIDSFALIHDSSGTIPADAGNLFKAVRETMVKTYEDNDVIA 866
Query: 994 NLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFF 1029
+ D F + P +P +GD +LR++L S + F
Sbjct: 867 DFYDQFADQLHESQLDKMPAVPAKGDLNLRDILESDFAF 905
>gi|448936997|gb|AGE60541.1| RNA polymerase [Pelagibacter phage HTVC011P]
Length = 880
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 193/611 (31%), Positives = 308/611 (50%), Gaps = 55/611 (9%)
Query: 458 YMPMLVPPVKWT-----GYDKGAHFF--LPSYV---MRTHGAKQQRDTVKRTPKKQLEPV 507
YMPM +PP KWT GY H F P + +++ +K +R + K PV
Sbjct: 283 YMPMKMPPRKWTSPFIGGYYGKKHNFENKPKDIINALQSSKSKYRRYLEELNNKVHEMPV 342
Query: 508 -FEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL-VDRNDVPLPEKP---ETEDEAQL 562
+E+++T+ T+W +N + ++ L L V+ + LP KP +T EA L
Sbjct: 343 VYESINTIQETEWVINKPIFDLIKTCMENDFNLGQLPVNPQSMELPPKPFDIKTNKEA-L 401
Query: 563 RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622
KW+ + ++V K + S+ + L + A +++ GF+YP+ DFR R YP L+
Sbjct: 402 IKWKREAQHVHKSIGQAMSKFIQVRLVMEEATVLQNIGGFFYPYQFDFRFRIYPKPALLS 461
Query: 623 HLGSDLCRGILEFAEGRTLGKSGLHWL-KIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
+D R +L+F G+ +G + + + I ANLY G VDK R + +++ D I
Sbjct: 462 PQSADYSRALLKFKFGKPMGNNDSYSVFAIAGANLY-GEVDKEELPIREQWVKDNTDRII 520
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
+A PLE WW A+ P+ LA I E + S FI+ +P+ D S +GLQHY+
Sbjct: 521 ATATNPLEDT-WWASADKPYCFLAWAIEFKEFVASGYSPDFITTLPIQADCSNSGLQHYS 579
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVD 801
A+ RD +G A NLV KP+DVY+ +A + L++ RD + +P L K + +D
Sbjct: 580 AMMRDEIGGKATNLVPSNKPSDVYNLVAQK-LIMKLRDMKDEP------LAKKWIDYGID 632
Query: 802 RKLVKQTVMTSVYGVTYIGAR----DQIKRRLKERGAPME-------EAELFGASCYAAK 850
RKL K+ VM Y +T R + +K++L E+G E E +F A+ +
Sbjct: 633 RKLCKKPVMCLPYSLTKFSCRKYIEEHMKKQLNEKGVSAETFRVSEKEDGIFKATNWLTP 692
Query: 851 VTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT-- 908
+ ++ E+ A+ IM +L + AK++ASEN PV WT+PL P+ + VKT
Sbjct: 693 ILWESINEIIVGAKEIMKYLKDIAKLVASENLPVTWTSPLNAPIQMLCYEKESKRVKTQM 752
Query: 909 --SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSY 965
S+ L++ +T ++ + PNF+H+ DG+ + + V +K G+ F+ +HDS+
Sbjct: 753 GDSIVKLSIAHDTNRISRRATSLGVCPNFIHANDGAVLQLAVVKAKKLGVDNFSMIHDSF 812
Query: 966 WTHACDVDEMNRILREKFVELYEMPIFENLLDSF--------QKSFPKLVFPPLPERGDF 1017
A D M + LRE F E+YE + +N D QK FPK +P++G
Sbjct: 813 GCVASDSHLMGKALREAFCEVYEQDVLQNFADEMYAMLSEKNQKKFPK-----MPKKGTL 867
Query: 1018 DLREVLGSPYF 1028
DL V S +F
Sbjct: 868 DLDLVKQSTFF 878
>gi|158425231|ref|YP_001526523.1| DNA-directed RNA polymerase [Azorhizobium caulinodans ORS 571]
gi|158332120|dbj|BAF89605.1| DNA-directed RNA polymerase [Azorhizobium caulinodans ORS 571]
Length = 841
Score = 272 bits (695), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 234/851 (27%), Positives = 377/851 (44%), Gaps = 103/851 (12%)
Query: 228 PYMKSLFLGWFEPLRDAIAK--EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLL 285
PY L P+ DA+ E+ R A + Y + + ++ A + + ++ +
Sbjct: 44 PYGMRLLKNLVLPVSDALEAFIEKARSGGAGRRHTALKYVEMVEPEVAAYLALKTVLDSI 103
Query: 286 MTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQE 345
R + + A + A++ EVR+ F E+ ++ + + E TT
Sbjct: 104 TR-----RETLQRCAIRVASALQDEVRMRAFRERHPERFKVTMSKIERATSRRYKTT--- 155
Query: 346 KLRKKVTDLIKKQKLPAVRRIVKGQDDF-KPWGQDARAKVGSRVIELLTQTAYIQSPADQ 404
V R++ G+ + W + VG ++IE+L +
Sbjct: 156 -----------------VARLMAGRVGIDEDWPTSDKLHVGIKLIEVLREAT-------- 190
Query: 405 LADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI---PYMPM 461
+ + ++T G + + L+ + + M ++P
Sbjct: 191 --------------GMVDIQRDTMGINDTQVFVVATEATLQWIADANQRMEFLSPAFLPT 236
Query: 462 LVPPVKWTG-YDKGAHFFLPSYVMRTHGAK-QQRDTVKRTPKKQLEPVFEALDTLGNTKW 519
++PP +WT +D G H L V R K + R+ ++ + L V+ A++ + T W
Sbjct: 237 IIPPKRWTTPFDGGYHSGL---VQRLPFVKTRNRNYLEELAGRDLSAVYAAVNAMQETPW 293
Query: 520 RVNNRVLSVLDRIWSCGGRLADL--VDRNDVPLPEKPE--TEDEAQLRKWQWKVRNVKKE 575
+VN VL VL W + L R+ + LP KP +E ++W+ +
Sbjct: 294 QVNRDVLRVLKEAWDRDLKSPKLKLPPRDPLDLPPKPADIATNEVSRKEWKKAASLIHAA 353
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
N + S+R I + +A + + Y+P+ +DFRGR Y + +LN G D + +L F
Sbjct: 354 NAKLKSKRVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAVPMFLNPQGPDHAKALLTF 413
Query: 636 AEGRTLGKS-GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL-EGRRW 693
A G+ +G WL IH AN+Y G DK S E R+++ E I A P EG +
Sbjct: 414 ARGKPIGDGVAAGWLAIHGANVY--GYDKASLEDRISWVEERNALIASVAADPWGEGFEF 471
Query: 694 WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
W +A+ P+Q LA C LR ++S +PV DGSCNGLQHY+A RD +G AAV
Sbjct: 472 WTEADKPWQFLAFCFEWAGFLREGF--DYVSTLPVALDGSCNGLQHYSAALRDPVGGAAV 529
Query: 754 NLVAREKPADVYSGIAARVLVIIQ-------------------RDAQRDPAVFPDALRAK 794
NLV KP D+Y+ +A L ++ R + + + +
Sbjct: 530 NLVPSGKPQDIYARVAEVALGLVTAFVCPNGSTTGTIPNLSRLRKTWAEHGIDELDMANR 589
Query: 795 LLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER---GAPM-----EEAELFGASC 846
L +DRK+ K+ VMT YG T R+ I+ ++E+ G P + +F A+
Sbjct: 590 WLAFGIDRKVTKRAVMTLPYGSTQYSCREFIEEAVREKVEEGKPNPFAVGDSDGIFKATL 649
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
+ + A+GE+ +AAR M WL ECA++ A+E PV W TP G V Q YR +
Sbjct: 650 WLQPLVWQAIGEVVKAARVGMDWLKECARLAAAEGLPVIWQTPDGFLVQQSYRNSSARRI 709
Query: 907 KTSLQ---ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHM-MMTAVACRKAGLTFAGVH 962
T L L ++ E + + +RQ+ PN+VHS+D + M M +A FA VH
Sbjct: 710 DTHLDGRVRLIIREELDTIDKRRQQQGVAPNWVHSMDATAMRMFINLALTNGMQHFALVH 769
Query: 963 DSYWTHACDVDEMNRILREKFVELYE--MPIFENLLDSFQKSFPKLV--FPPLPERGDFD 1018
DSY T A DV+ M LR+ FV+LY P+ E +D + P +P +G D
Sbjct: 770 DSYGTVAADVELMGACLRKAFVQLYTDCDPLAEFRVDIAGMLSDDALGDLPEVPAKGTLD 829
Query: 1019 LREVLGSPYFF 1029
+ V S +FF
Sbjct: 830 VSLVEESDFFF 840
>gi|167841470|ref|ZP_02468154.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
gi|424904041|ref|ZP_18327551.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
gi|390930019|gb|EIP87421.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
Length = 818
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 193/619 (31%), Positives = 296/619 (47%), Gaps = 51/619 (8%)
Query: 443 VLKGLERTARHMVIPYMPMLVPPVKWTG-YDKGAHFFL-----PSYVMRTHGAKQQRDTV 496
V+ + T H + +P + P W +D G H + PSYV T + R T+
Sbjct: 218 VVSSIRGTVEHTMPYSLPFIEQPKDWISMFDGGYHTGMMRRQTPSYVNLT----KNRRTL 273
Query: 497 KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE- 555
+ V A++ L KWRVN RVL + G + +++ + + P P +PE
Sbjct: 274 DAMRDLDMPDVRSAINHLQAVKWRVNQRVLDAVKDCARHGIDMDEIISQAEQPKPPRPEW 333
Query: 556 ----------TEDE-AQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
T DE + W+ ++ + + R ++ + +A K K+ Y+
Sbjct: 334 LTDDMRKEDMTGDELVEFSGWKRRMAEWHTDRKLRGTRWGRFYMATRMADKFKEYPAIYF 393
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGK-SGLHWLKIHLANLYAGGVDK 663
+ DFRGR Y ++ GSDL + +L+FAEG+ L + W KI AN + GVDK
Sbjct: 394 LYQADFRGRLYAQTTGISPQGSDLQKSLLQFAEGKRLDTPEAVRWFKIAGANRF--GVDK 451
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
+ E R+A+ I A P+ R W A+ P Q LA C + SP+TF
Sbjct: 452 VPFEDRIAWVNQREQFILQFAADPVSHREW-QDADSPLQFLAWCFEYADW--RQSPDTFE 508
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD 783
S I V DGSCNGLQH++A+ RD++G AVNLV ++P D+Y +A V + + D
Sbjct: 509 SRIAVGLDGSCNGLQHFSAMLRDSVGGRAVNLVPGDRPNDIYQQVADVVALKLA-----D 563
Query: 784 PAV-----FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP--M 836
P + + K ++R +VK++VMT YG T + I ++GA
Sbjct: 564 PNLPLRHERDSVFKGKWKAHGMNRSIVKRSVMTLPYGSTRFSCAEFIVEDYLKKGAATEF 623
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVV 895
E E A+ + + + A+GE+ AA M+WL A +I Q + WTTP G V
Sbjct: 624 ETTEYRFAAEFLSHLVWDAIGEVVIAASAAMAWLQRAAGLILKRGGQQIGWTTPSGFLVE 683
Query: 896 QPYRKLGRHTVKTSLQ----ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 951
Q Y ++ V T L I + + + + PNFVHS+D +H+ +T C
Sbjct: 684 QAYNEIDIVRVNTKLLGHTVIKVFGSMADTPSISKHKNGIAPNFVHSMDAAHLALTVKEC 743
Query: 952 RKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
++ G+ + A +HD Y THA D +++ R +R+ FVE+YE + L F+ F L P
Sbjct: 744 KRLGIDSLAMIHDDYGTHAADTEKLYRAIRKTFVEMYET---NDPLAHFRDQFEDL--PA 798
Query: 1011 LPERGDFDLREVLGSPYFF 1029
LP RGD DL +V S +FF
Sbjct: 799 LPSRGDLDLSQVEQSQFFF 817
>gi|77118172|ref|YP_338094.1| RNA polymerase [Enterobacteria phage K1F]
gi|72527916|gb|AAZ72968.1| RNA polymerase [Enterobacteria phage K1F]
gi|83308114|emb|CAJ29347.1| gp1 protein [Enterobacteria phage K1F]
Length = 893
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 191/624 (30%), Positives = 306/624 (49%), Gaps = 63/624 (10%)
Query: 458 YMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
Y P +VPP WTG G ++ P ++R G+K V R + V+EA++ +
Sbjct: 280 YQPCVVPPKPWTGVVGGGYWAKGRRPLPLIRL-GSKS---AVARYEDVYMPEVYEAVNII 335
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKK 574
NT W+VN +VL V++ + D + + + PE E E +L+ W+ + +
Sbjct: 336 QNTPWKVNKKVLDVVNMVEKLNNTPIDDIPQMEPLKPEAYAGETEEELKAWKKAAAGIYR 395
Query: 575 ENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILE 634
+ R S+R + ++ A K + ++P+N+D+RGR Y + P N G+D+ +G+L
Sbjct: 396 REKARQSRRLSLSFIVNQANKFSQFKAIWFPYNMDWRGRVYAV-PMFNPQGNDMQKGLLT 454
Query: 635 FAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWW 694
A G+ +G G WLK+H AN GVDK++ E R+ + E++ D+I +A P++ WW
Sbjct: 455 LAVGKPIGADGFKWLKVHGAN--CAGVDKVTFEERIKWVEDNHDNIMAAAKAPMDSIEWW 512
Query: 695 LKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVN 754
K + PF LA C + ++ +P+ DGSC+G+QH++A+ RD +G AVN
Sbjct: 513 GKLDSPFCFLAFCFEYAGVMHHGL--SYSCSLPIAFDGSCSGIQHFSAMLRDHIGGHAVN 570
Query: 755 LVAREKPADVYSGIAAR------VLVIIQRD----AQRDPAVFPDALRAKL--------- 795
L K D+Y ++ R VL++ D D R KL
Sbjct: 571 LTPSGKVQDIYRIVSDRIEEELKVLLVNGTDNEMVTHEDKKTGEITERLKLGTRELARQW 630
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK----ERGAPMEEAELFGASCYAAKV 851
L + RK+ K++VMT YG G DQ+ + + G+ E AS + AK+
Sbjct: 631 LTYGMSRKVTKRSVMTLAYGSKEYGFADQVYEDIVMPAIDSGSGAMFTEPSQASRFMAKM 690
Query: 852 TLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYR 899
A+ AA M WL AK++A+E + PV W TP G PV Q YR
Sbjct: 691 IWEAVSVTVVAAVDAMKWLQGAAKLLAAEVKDKKTGEILKPCLPVHWVTPDGFPVWQEYR 750
Query: 900 KLGRHTVKTSLQIL-------TLQRETEKVMVK-RQRTAFPPNFVHSLDGSHMMMTAVAC 951
K + T + +L L T+ + T+K + K +Q + PNFVHS DGSH+ T V
Sbjct: 751 K--KDTTRLNLMFLGSFNLQPTVNKGTKKELDKHKQESGISPNFVHSQDGSHLRKTVVHT 808
Query: 952 -RKAG-LTFAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLLDSFQKSF---PK 1005
RK G ++FA +HDS+ T D + + R +RE VE Y + + + + F+ +
Sbjct: 809 HRKYGVMSFAVIHDSFGTIPADAEYLFRGVRETMVETYRDNDVLLDFYEQFEYQLHESQR 868
Query: 1006 LVFPPLPERGDFDLREVLGSPYFF 1029
P LP++G ++ ++L S + F
Sbjct: 869 DKLPELPKKGKLNIEDILSSDFAF 892
>gi|326536115|ref|YP_004300538.1| gp1 [Enterobacteria phage 285P]
gi|256861504|gb|ACV32460.1| gp1 [Enterobacteria phage 285P]
Length = 883
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 228/798 (28%), Positives = 373/798 (46%), Gaps = 122/798 (15%)
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
A IG +IE E+R + +++E N V QE L K+V + KK
Sbjct: 139 ATKIGRSIEDELRFGRI------------RDEEAKHFKNHV---QEALNKRVGIVYKKAF 183
Query: 360 LPAV--RRIVKGQ--DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
+ AV + + GQ + W + VG R++ELL +
Sbjct: 184 MQAVEGKMLDAGQLQTKWTTWTPEESIHVGVRMLELLIGST------------------- 224
Query: 416 FTHALRTVSKETKGGSKKYG-VIECNPLVLKGLERTARHM--VIP-YMPMLVPPVKWTGY 471
L + + G +K G I+ + L + A + + P Y P +VPP WT
Sbjct: 225 ---GLVELHRPFAGNVEKDGEYIQLTEQYVDLLSKRAGALAAIAPMYQPCVVPPKPWTSP 281
Query: 472 DKGAHFFL---PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G ++ P ++RT G+K+ ++R + V++A++ NT W++N +VL+V
Sbjct: 282 VGGGYWAAGRKPLSLVRT-GSKK---GLERYNDVYMPEVYKAVNIAQNTPWKINKKVLAV 337
Query: 529 LDRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRC 584
++ I W C ++R ++P+ PE +T +EA L+ W+ + ++ + R S+R
Sbjct: 338 VNEIVNWKHCPVEDVPALERGELPVKPEDIDT-NEASLKAWKKAASAIYRKEKARVSRRM 396
Query: 585 DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS 644
+E L A K + ++P N+D+RGR Y + P N G+D+ +G+L A+G+ +G
Sbjct: 397 SMEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVD 455
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
G +WLKIH AN GVDK+ R+ F +++ ++I A P+ WW + + PF L
Sbjct: 456 GYYWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFL 512
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A C + +P+ DGSC+G+QH++A+ RD +G AVNL+ ++ D+
Sbjct: 513 AFCFEYAGVQHHGM--NYNCSLPLAFDGSCSGIQHFSAMLRDEIGGRAVNLLPSKEVQDI 570
Query: 765 YSGIAARVLVIIQRD------------AQRDPAVFPDALR-------AKLLLSQVDRKLV 805
Y +A RV I+ +D +D + L+ + L V RK+
Sbjct: 571 YRIVAERVNEILNQDVINGTDNEVETVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVT 630
Query: 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQ 861
K++VMT YG G RDQ+ + + +F A+ Y AK+ A+
Sbjct: 631 KRSVMTLAYGSKEYGFRDQVLEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWNAVTVTVV 690
Query: 862 AARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTS 909
AA M+WL AK++A+E + V W TP G PV Q Y+K V+T
Sbjct: 691 AAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAVHWVTPDGFPVWQEYKK----PVQTR 746
Query: 910 LQILTLQR-------ETEK---VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GL-T 957
L ++ L + T K + ++Q + PNFVHS+DGSH+ MT V + G+ +
Sbjct: 747 LNLMFLGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVVRSNEVYGVES 806
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYE-----MPIFENLLDSFQKS-FPKLVFPPL 1011
FA +HDS+ T D + + +RE V YE +E D +S K+ P +
Sbjct: 807 FALIHDSFGTIPADAGNLFKAVRETMVNTYEENDVLADFYEQFADQLHESQLDKM--PEM 864
Query: 1012 PERGDFDLREVLGSPYFF 1029
P +G DL+E+L S + F
Sbjct: 865 PAKGSLDLQEILKSDFAF 882
>gi|402588219|gb|EJW82153.1| DNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 319
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 197/331 (59%), Gaps = 30/331 (9%)
Query: 718 SPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQ 777
+P TF+SH+P++QDGSCNGLQHYAALGRD G VNLV EKP+DVYS +AARV
Sbjct: 1 NPTTFVSHLPIYQDGSCNGLQHYAALGRDQEGGKEVNLVPAEKPSDVYSSVAARVEQKRL 60
Query: 778 RDAQRDPAVFPD-ALRAKLLL-SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP 835
D Q + D AL + ++ V RK++KQTVMT+VYGVT GAR QI+R+LK
Sbjct: 61 EDEQSPESEVHDLALSLRTVMPGPVSRKVIKQTVMTTVYGVTMNGARRQIERQLK--AME 118
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
++ E + Y A T +L + F ++ + W +CA+ I V W TPLGLPV
Sbjct: 119 IDSNERMKYATYLADRTFRSLNDAFTSSMKMKDWFRDCAEAIVKLMHTVEWITPLGLPVY 178
Query: 896 QPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
QPY ++T ++ + R + + +Q AFPPNFVHSLD +HMM+TA+ CR+ G
Sbjct: 179 QPY-------LETKMEENKVYRLPKTI---KQINAFPPNFVHSLDSTHMMLTALNCRRLG 228
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF-QKSFPKLV------- 1007
+TFA VHD YWTHAC+VDEMN+I RE+FV L+ P+ + + F QK P +
Sbjct: 229 ITFAAVHDCYWTHACEVDEMNKICREQFVHLHSEPLVKQCAEFFRQKYLPNWLRTVMLTE 288
Query: 1008 --------FPPLPERGDFDLREVLGSPYFFN 1030
F P +G DL V S YFF+
Sbjct: 289 EFQEIRKKFTPKVRQGMLDLDAVRHSTYFFS 319
>gi|194100311|ref|YP_002003741.1| gp1 [Enterobacteria phage EcoDS1]
gi|193201306|gb|ACF15785.1| gp1 [Enterobacteria phage EcoDS1]
Length = 893
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 189/624 (30%), Positives = 306/624 (49%), Gaps = 63/624 (10%)
Query: 458 YMPMLVPPVKWTGYDKGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
Y P +VPP WTG G ++ P ++R G+K V R + V++A++ +
Sbjct: 280 YQPCVVPPKPWTGVVGGGYWAKGRRPLPLIRL-GSKS---AVARYEDVYMPEVYDAVNII 335
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKK 574
NT W+VN +VL V++ + D + + + PE E E +L+ W+ + +
Sbjct: 336 QNTPWKVNKKVLEVVNMVEKLNNTPIDDIPQMEPLKPEDYAGETEEELKAWKKAAAGIYR 395
Query: 575 ENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILE 634
+ R S+R + ++ A K + ++P+N+D+RGR Y + P N G+D+ +G+L
Sbjct: 396 REKARQSRRLSLSFIVNQANKFSQFKAIWFPYNMDWRGRVYAV-PMFNPQGNDMQKGLLT 454
Query: 635 FAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWW 694
A G+ +G G WLK+H AN G+DK++ E R+ + E++ D+I +A P++ WW
Sbjct: 455 LAVGKPIGADGFKWLKVHGAN--CAGIDKVTFEERIKWVEDNHDNIMATAKAPMDSIEWW 512
Query: 695 LKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVN 754
K + PF LA C + ++ +P+ DGSC+G+QH++A+ RD +G AVN
Sbjct: 513 GKLDSPFCFLAFCFEYAGVMHHGL--SYSCSLPIAFDGSCSGIQHFSAMLRDHIGGHAVN 570
Query: 755 LVAREKPADVYSGIAAR------VLVIIQRD----AQRDPAVFPDALRAKL--------- 795
L K D+Y ++ R VL++ D D R KL
Sbjct: 571 LTPSGKVQDIYRIVSDRIEEELKVLLVNGTDNEMVTHEDKKTGEITERLKLGTRELARQW 630
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK----ERGAPMEEAELFGASCYAAKV 851
L + RK+ K++VMT YG G DQ+ + + G+ E AS + AK+
Sbjct: 631 LTYGMSRKVTKRSVMTLAYGSKEYGFADQVYEDIVMPAIDSGSGAMFTEPSQASRFMAKM 690
Query: 852 TLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYR 899
A+ AA M WL AK++A+E + PV W TP G PV Q YR
Sbjct: 691 IWEAVSVTVVAAVDAMKWLQGAAKLLAAEVKDKKTGEILKPCLPVHWVTPDGFPVWQEYR 750
Query: 900 KLGRHTVKTSLQIL-------TLQRETEKVMVK-RQRTAFPPNFVHSLDGSHMMMTAVAC 951
K + T + +L L T+ + T+K + K +Q + PNFVHS DGSH+ T V
Sbjct: 751 K--KDTTRLNLMFLGSFNLQPTVNKGTKKELDKHKQESGISPNFVHSQDGSHLRKTVVHT 808
Query: 952 -RKAG-LTFAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLLDSFQKSF---PK 1005
RK G ++FA +HDS+ T D + + R +RE VE Y + + + + F+ +
Sbjct: 809 HRKYGVMSFAVIHDSFGTIPADAEYLFRGVRETMVETYRDNDVLLDFYEQFEYQLHESQR 868
Query: 1006 LVFPPLPERGDFDLREVLGSPYFF 1029
P LP++G ++ ++L S + F
Sbjct: 869 DKLPELPKKGKLNIEDILSSDFAF 892
>gi|119637750|ref|YP_918986.1| RNA polymerase [Yersinia phage Berlin]
gi|119391781|emb|CAJ70654.1| hypothetical protein [Yersinia phage Berlin]
gi|312436348|gb|ADQ83157.1| RNA polymerase [Yersinia phage Yep-phi]
Length = 883
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 224/795 (28%), Positives = 367/795 (46%), Gaps = 116/795 (14%)
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
A IG +IE E+R + +++E N V QE L K+V + KK
Sbjct: 139 ATKIGRSIEDELRFGRI------------RDEEAKHFKNHV---QEALNKRVGIVYKKAF 183
Query: 360 LPAV--RRIVKGQ--DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
+ AV + + GQ + W + VG R++ELL +
Sbjct: 184 MQAVEGKMLDAGQLQTKWTTWTPEEVIHVGVRMLELLIGST------------------- 224
Query: 416 FTHALRTVSKETKGGSKKYG-VIECNPLVLKGLERTARHM--VIP-YMPMLVPPVKWTGY 471
L + + G +K G I+ + L + A + + P Y P +VPP WT
Sbjct: 225 ---GLVELHRPFAGNIEKDGEYIQLTEQYVDLLSKRAGALAAIAPMYQPCVVPPKPWTSP 281
Query: 472 DKGAHFFL---PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G ++ P ++RT G+K+ ++R + V++A++ NT W++N +VL+V
Sbjct: 282 VGGGYWAAGRKPLSMVRT-GSKK---GLERYNDVYMPEVYKAVNIAQNTPWKINKKVLAV 337
Query: 529 LDRI--WS-CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
++ I W C ++R ++P+ +EA L+ W+ + ++ + R S+R
Sbjct: 338 VNEIVNWKHCPVADVPAMERGELPVKPVDIDTNEASLKAWKKAASAIYRKEKARVSRRMS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + ++P N+D+RGR Y + P N G+D+ +G+L A+G+ +G G
Sbjct: 398 MEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E++ ++I A P+ WW + + PF LA
Sbjct: 457 FYWLKIHGAN--TAGVDKVDFAERIKFIEDNHENIMSVAADPI-ANTWWTEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C + +P+ DGSC+G+QH++A+ RD +G AVNL+ ++ D+Y
Sbjct: 514 FCFEYAGVQHHGM--NYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDIY 571
Query: 766 SGIAARVLVIIQRD------------AQRDPAVFPDALR-------AKLLLSQVDRKLVK 806
+A RV I+ +D +D + L+ + L V RK+ K
Sbjct: 572 RIVAERVNEILNQDVINGTDNEVETLTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G RDQ+ + + +F A+ Y AK+ A+ A
Sbjct: 632 RSVMTLAYGSKEYGFRDQVLEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWNAVTVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q YRK V+T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTKEVLRNRCAVYWVTPDGFPVWQEYRK----PVQTRL 747
Query: 911 QILTLQR-------ETEK---VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GL-TF 958
++ L + T K + ++Q + PNFVHS+DGSH+ MT V + G+ +F
Sbjct: 748 NLMFLGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVVRSYEVYGVESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V Y E + + D F + P +P +
Sbjct: 808 ALIHDSFGTIPADAGNLFKAVRETMVNTYEENDVLADFYDQFADQLHESQLDKMPEMPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G D++E+L S + F
Sbjct: 868 GSLDIQEILKSDFAF 882
>gi|159487225|ref|XP_001701634.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280853|gb|EDP06609.1| predicted protein [Chlamydomonas reinhardtii]
Length = 311
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/314 (45%), Positives = 189/314 (60%), Gaps = 13/314 (4%)
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
P QDG+CNGLQHYAALGRD G AVNLV ++P DVY + R + + P+
Sbjct: 1 PRTQDGTCNGLQHYAALGRDLRGGTAVNLVPADRPQDVYQRVRIRPVAVWVLRHVHVPSS 60
Query: 787 FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG--APMEEAELFGA 844
F R + VDRKLVKQ+VMT VYGVT++GARDQI+ L+ERG P E ++
Sbjct: 61 FSTCSRPPWIHGHVDRKLVKQSVMTYVYGVTFVGARDQIESPLEERGWGNPKERRKV--- 117
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRH 904
+ Y A + ++ ++F A + SWL +CAK S PV WT+PLG PV QPYRK+
Sbjct: 118 ATYVAGIVFESMSDVFGPAVRVRSWLEDCAKYAVSAGAPVVWTSPLGFPVEQPYRKVPTL 177
Query: 905 TVKTSLQILTLQRETEKVM----VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG 960
+V TSLQ +++ + + V++Q + FPPN+VH LDG+HMMMTA A R+AG FA
Sbjct: 178 SVHTSLQTFSIRDNSRDAVSPLDVRKQCSGFPPNYVHCLDGAHMMMTARAVREAGACFAA 237
Query: 961 VHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSF----QKSFPKLVFPPLPERGD 1016
VHDSYWTHA VD MN+ +R+ FV+L+E P+ L + S P +P G
Sbjct: 238 VHDSYWTHAASVDLMNKAIRDTFVQLHERPLLHELRRELLRNPEYSGATAALPRVPAPGQ 297
Query: 1017 FDLREVLGSPYFFN 1030
DL V S YFF+
Sbjct: 298 LDLSVVRQSTYFFS 311
>gi|378406358|gb|AFB82771.1| RNA polymerase [Vibrio phage phi-A318]
Length = 928
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 224/844 (26%), Positives = 383/844 (45%), Gaps = 146/844 (17%)
Query: 303 IGDAIEQEVRIHK-------FLEKTKKKNETKNKEDEEGDESNTVTTEQE-KLRKKVTDL 354
IG IE EVR K +++ K+ + +N + D V E+E KL L
Sbjct: 113 IGRRIEDEVRFTKLNNAAPKYIQAIKESLKKRNSNSYKFDHDVMVHAEKELKLLADFQAL 172
Query: 355 IK--KQKLPAVRRIVKGQDDFK----------------PWGQDARAKVGSRVIELLTQTA 396
+ ++KL +R + D ++ PW + ++G+++IE+ +
Sbjct: 173 LGAGEEKLEIMRLLSIDNDKYQHLLDKAEFAIDIDRWIPWSDNDVIQLGAKLIEIFGK-- 230
Query: 397 YIQSPADQLADAPPDIFPAFTHALRTVSKETKG---GSKKYGVIECNPLV--LKGLERTA 451
+ L D P ++K+ G G ++ + L ++G +
Sbjct: 231 ------NMLMDGQP-----------LIAKQVNGQGRGKTTAKIVATDALETWIQGYKEVV 273
Query: 452 RHMVIPYMPMLVPPVKWTG-YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 510
+M Y P +VPP +W ++ G H S + + ++ ++R +KQ+ V++A
Sbjct: 274 GNMSPAYEPCVVPPKEWKSPFNGGYHSKEVSSNLPIAKVRDKKH-LRRLTRKQMPKVYQA 332
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL---------VDRNDVPLP---------- 551
L+ L N KW++N + ++ + I RL +L ++ P+P
Sbjct: 333 LNALQNVKWQINPSIYAIANEI-----RLRELPLGMPEFKKYNKPACPVPAIYSDLRGED 387
Query: 552 --EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
+ + + +A + W+ ++ ++ + +R S ++ L A K KD E ++ + +D
Sbjct: 388 LMQVLDDDQKAAFKNWKRQIASIYAKENKRKSDVREVVATLDQANKFKDFENLHFVYTLD 447
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669
FRGR Y ++ G DL + ++ FA+ LG +G +W K+H AN++ G DK + R
Sbjct: 448 FRGRVYCHSSLVSPQGGDLQKALIRFADSMPLGSTGAYWFKVHGANVW--GWDKETFAER 505
Query: 670 LAF--TENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL----RSSSPETFI 723
++ TE + D A P+ W KA+ P+Q LA C L ++ + F
Sbjct: 506 VSRCETEEFKEMCLDIAADPITFTD-WTKADKPWQFLAWCYEYAALLEWIDEGNNEQDFP 564
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV----IIQRD 779
SHI V DGSC+G+QHY+A+ RD++G VNL+ EKP D+Y G ++V+V I +
Sbjct: 565 SHIAVAMDGSCSGIQHYSAMLRDSVGGKEVNLLPSEKPQDIY-GAVSKVVVEWMEAITNN 623
Query: 780 AQRDPAVFP---DALRAKL------------------------LLSQVDRKLVKQTVMTS 812
+RD ++ D+L AK L V R + K+ VMT
Sbjct: 624 DERDCPIYDKLIDSLVAKFEKAKLTGDLESKARIMAYKFCEEWLRIGVTRSMTKKPVMTL 683
Query: 813 VYGVTYIGARDQIKRRLKE-----------RGAPMEEAELFGAS----------CYAAKV 851
YG + + RD I LK+ RG F S +A+ +
Sbjct: 684 PYGSSQLTCRDSIADYLKDLQEKADNKARARGMKAGSIHAFTDSDGDLPLRDAISFASML 743
Query: 852 TLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQP-YRKLGRHTVKTSL 910
T A+GE+ AAR M ++ E IA +N+P+ W TP G V Q Y +KT +
Sbjct: 744 TWAAIGEVVVAARAGMKYIKEVCSAIAKDNKPLEWMTPTGFIVKQAVYEVKEDKRIKTQM 803
Query: 911 QILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHDSYW 966
T R T+K+ +R ++ PNFVHS+D SH+++ A G+T A +HDS+
Sbjct: 804 LGETFFRTSVRTDKIDPRRMASSAAPNFVHSMDASHLVLAVCAFEDNGITSIAVIHDSFG 863
Query: 967 THACDVDEMNRILREKFVELY-EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGS 1025
THA + + + L FV++Y E + ++ ++ + + +PE+G+ DL+EVL S
Sbjct: 864 THAGNTELLRLHLSGSFVQMYEENDVIKDFIEYNEALILTEIEATVPEKGELDLQEVLKS 923
Query: 1026 PYFF 1029
Y F
Sbjct: 924 LYCF 927
>gi|194100470|ref|YP_002003315.1| gp1 [Yersinia phage Yepe2]
gi|193201203|gb|ACF15684.1| gp1 [Yersinia phage Yepe2]
gi|387941867|gb|AFK13447.1| DNA-directed RNA polymerase [Yersinia phage YpP-G]
Length = 883
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 222/795 (27%), Positives = 366/795 (46%), Gaps = 116/795 (14%)
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
A IG +IE E+R + +++E N V QE L K+V + KK
Sbjct: 139 ATKIGRSIEDELRFGRI------------RDEEAKHFKNHV---QEALNKRVGIVYKKAF 183
Query: 360 LPAV--RRIVKGQ--DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
+ AV + + GQ + W + VG R++ELL +
Sbjct: 184 MQAVEGKMLEAGQLHTKWTTWTPEEVIHVGVRMLELLIGST------------------- 224
Query: 416 FTHALRTVSKETKGGSKKYG-VIECNPLVLKGLERTARHM--VIP-YMPMLVPPVKWTGY 471
L + + G +K G I+ + L + A + + P Y P +VPP WT
Sbjct: 225 ---GLVELHRPFAGNIEKDGEYIQLTEQYVDLLSKRAGALAAIAPMYQPCVVPPKPWTSP 281
Query: 472 DKGAHFFL---PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G ++ P ++RT G+K+ ++R + V++A++ NT W++N +VL+V
Sbjct: 282 VGGGYWAAGRKPLSMVRT-GSKK---GLERYNDVYMPEVYKAVNIAQNTPWKINKKVLAV 337
Query: 529 LDRIWS---CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
++ I S C ++R ++P+ +E L+ W+ + ++ + R S+R
Sbjct: 338 VNEIVSWKHCPVADVPAMERGELPVKPVDIDTNEVALKAWKKAASAIYRKEKARVSRRMS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + ++P N+D+RGR Y + P N G+D+ +G+L A+G+ +G G
Sbjct: 398 MEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F +++ ++I A P+ WW + + PF LA
Sbjct: 457 FYWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWTEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C + +P+ DGSC+G+QH++A+ RD +G AVNL+ ++ D+Y
Sbjct: 514 FCFEYAGVQHHGM--NYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDIY 571
Query: 766 SGIAARVLVIIQRD------------AQRDPAVFPDALR-------AKLLLSQVDRKLVK 806
+A RV I+ +D +D + L+ + L V RK+ K
Sbjct: 572 RIVAERVNEILNQDVINGTDNEVETLTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G RDQ+ + + +F A+ Y AK+ A+ A
Sbjct: 632 RSVMTLAYGSKEYGFRDQVLEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWNAVTVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q YRK V+T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTKEVLRNRCAVYWVTPDGFPVWQEYRK----PVQTRL 747
Query: 911 QILTLQR-------ETEK---VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GL-TF 958
++ L + T K + ++Q + PNFVHS+DGSH+ MT V + G+ +F
Sbjct: 748 NLMFLGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVVRSYEVYGVESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V Y E + + D F + P +P +
Sbjct: 808 ALIHDSFGTIPADAGNLFKAVRETMVNTYEENDVLADFYDQFADQLHESQLDKMPEMPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G D++E+L S + F
Sbjct: 868 GSLDIQEILKSDFAF 882
>gi|326536914|ref|YP_004306321.1| RNA polymerase [Pseudomonas phage phiIBB-PF7A]
gi|318054490|gb|ADV35666.1| RNA polymerase [Pseudomonas phage phiIBB-PF7A]
Length = 891
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 225/853 (26%), Positives = 376/853 (44%), Gaps = 122/853 (14%)
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
E + ++ + VA Y + + + +A +T+ L++T R +V IG I
Sbjct: 89 EHQMTKVRRKSVAL-KYLNMVRPERVAALTIK----LVITEMARQRQDLVSVTTRIGRTI 143
Query: 308 EQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
E+E R + ++ K + K+ +T +K + ++ + L A +
Sbjct: 144 EEEARFGRIRDEEAKHFQKHIKDALNKRNGHT-------YKKAFMEAVESKMLEA-GELN 195
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
D+ D +G+R +E+L ++ AL + ++
Sbjct: 196 GAWADWANSDSDVMHHIGARCLEILIKST----------------------ALVEIVRKN 233
Query: 428 KGGSKKYGVIECNPLVLKGLERTARHMV---IPYMPMLVPPVKWTGYDKGAHFF---LPS 481
G V++ + L+ L + A + PM+VPP WT G ++ P+
Sbjct: 234 AGTKDDQNVVQLSGPWLEQLSKRAFSLAGINTINQPMVVPPRPWTRPVGGGYWGKGRRPT 293
Query: 482 YVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD 541
+ +RTH + +++R + V++A++ NT W +N VL+V + + +
Sbjct: 294 HFIRTH----TKASLERYRDVDMAEVYKAVNIAQNTAWAINKPVLAVAEALLAWPNVPVK 349
Query: 542 LVDRNDVP-LPEKPETEDE--AQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
V LP KP+ DE L+ W+ + V + R S+R +E+ + ARK D
Sbjct: 350 KWPSAAVSELPTKPDDIDENPESLKAWKKEAAGVYRGEAARISRRLSLEMNVETARKFAD 409
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658
E Y+PHN+D+RGR Y + + + G+D+ +GIL+ ++G +G G+ WL IH AN
Sbjct: 410 YEAIYFPHNLDWRGRVYSLTSF-SPQGNDITKGILQASKGEPVGAEGIEWLMIHGAN--T 466
Query: 659 GGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSS 718
GVDK+ + R + ++ D I A PL+ W+ + PF LA C R
Sbjct: 467 AGVDKVPFDERKQWVRDNEDCILRCARDPLQNTE-WMSMDSPFCFLAFCFEWAGVKRDG- 524
Query: 719 PETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQR 778
E +S +P+ DGSC+G+QH++A+ RD +G AVNL+ D+Y ++ V I++
Sbjct: 525 -ENHVSALPIAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSPTVQDIYRLVSDGVNNILRD 583
Query: 779 DAQRDP-------------------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYI 819
D + L A L VDR + K++VMT YG
Sbjct: 584 DVDNGTDDSSETIVDKKTGEIRERRIIGTRTLAAMWLAYGVDRSVTKRSVMTLAYGSKEF 643
Query: 820 GARDQIKRRLKERGAPMEEA--ELFG----ASCYAAKVTLTALGEMFQAARGIMSWLGEC 873
G DQ++ + + P +A +F AS Y A + ++G+ AA MSWL
Sbjct: 644 GFCDQVRDDIVQ---PAIDAGKTMFTDAQQASRYMAHLIWVSVGKTVVAAVEAMSWLQTS 700
Query: 874 AKIIASENQ--------------------PVRWTTPLGLPVVQPYRKLGR--------HT 905
AK+++SE + PV W TP G PV Q Y+ +
Sbjct: 701 AKLLSSEVKAKKDDPTKDVKKGDILKPAMPVYWVTPDGFPVWQEYKVADKVRVDLIFMGD 760
Query: 906 VKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GLT-FAGVHD 963
V+ +L R K+ ++Q + PNFVHSLDGSH+ MT V + G+ FA +HD
Sbjct: 761 VRLQTTVLQTDRGDNKIDARKQESGISPNFVHSLDGSHLRMTVVKGHEGYGINFFALIHD 820
Query: 964 SYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV-------FPPLPERGD 1016
S+ T + + +RE V+ YE ++L F+ F + P LP +G
Sbjct: 821 SFGTIPARAGSLFKAVRETMVDTYEN---HDVLADFRDQFIDQLHETQMEKMPSLPTKGA 877
Query: 1017 FDLREVLGSPYFF 1029
+RE+L S + F
Sbjct: 878 LQIREILKSQFAF 890
>gi|29366702|ref|NP_813747.1| T3/T7-like RNA polymerase [Pseudomonas phage gh-1]
gi|29243561|gb|AAO73140.1|AF493143_1 putative RNA-polymerase [Pseudomonas phage gh-1]
Length = 885
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 250/927 (26%), Positives = 398/927 (42%), Gaps = 162/927 (17%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEP-LRDAIAK--E 248
L Q+++E EA+ + + + E+ N K L LG P L AI E
Sbjct: 31 LAAEQLQLEHEAYTLGEERFHKAMERQMERGEFSNSQVAKPL-LGHLVPMLSKAITDWIE 89
Query: 249 QERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIE 308
+ ++ + VA F Q+ + MA I + + + G + + A IG A+E
Sbjct: 90 HQTTKVRRKHVALGA-FQQMNPETMASIVIRWTINRI--AQRSGAPTITEMAVSIGGALE 146
Query: 309 QEVRIHKF--LEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRI 366
+E R + LE+ + K + N +T + + K +I+ +L
Sbjct: 147 EEARFGRIRVLEQQHYQKHIKKALAQR----NGMTYKVAYMEKVEAHMIEAGQLN----- 197
Query: 367 VKGQDDFKPW------GQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHAL 420
+PW G D R +G R++ELL ++ L
Sbjct: 198 -------EPWTEWDQSGADVRYHMGIRMLELLIEST----------------------QL 228
Query: 421 RTVSKETKGGSKKYG-----------VIECNPLVLKGLERTARHMVIP-YMPMLVPPVKW 468
V +E KG K G ++ +L G V P Y PM+VPP W
Sbjct: 229 IEVVREHKGNKKLDGEYVYLKAEWADKLQSRAYILSG--------VFPRYQPMVVPPKPW 280
Query: 469 TGYDKGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRV 525
G G ++ P +R + + R + V++A++ T W +N +V
Sbjct: 281 NGVRGGGYWAKGRKPVTFIRV----PTKRALNRYRDVHMPEVYKAVNLAQATPWAINQKV 336
Query: 526 LSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEA-------------QLRKWQWKVRNV 572
L+V + + S +VP+ E P TE EA L+ W+ V
Sbjct: 337 LAVANAVMSW----------ENVPIKEFPSTEREALPIKPGDIETNEEALKAWKKAAAGV 386
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
+++ R S+R E L A K + + Y+P+N+D+RGR Y + P N +D+ +GI
Sbjct: 387 YRKDAARVSRRLSYEFSLEQANKFAEYDAIYFPYNLDWRGRVYAI-PAFNPQSNDMTKGI 445
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
L+ A+G +GK G+ WL IH AN GVDK+ R + +++ + I A PL
Sbjct: 446 LQAAKGEPVGKDGIEWLMIHGAN--CAGVDKVDFSQRKQWIKDNEEMILRCAHDPLINTD 503
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
W+ + PF LA C E +S +P+ DGSC+G+QH++A+ RD G A
Sbjct: 504 -WMDMDSPFCFLAFCFEWQGVKLHG--EAHVSALPIAFDGSCSGIQHFSAMLRDERGGRA 560
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRD---AQRDPAVF----------------PDALRA 793
VNL+ + D+Y ++ V + +Q D D V L
Sbjct: 561 VNLLQSDDVQDIYKLVSDEVEIALQWDLKYGTEDSTVLDTNEDTGEITERRVLGTKTLAM 620
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAA 849
L + RK+ K++VMT YG G DQ++ + ++ + E+F AS Y A
Sbjct: 621 AWLTYGMSRKVTKRSVMTLAYGSKAYGFADQVREDIVKKAIDNGDGEMFTSPGEASRYMA 680
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQP 897
++ + AA M+WL + AK++ASE + PV W TP G PV Q
Sbjct: 681 GKIWDSVSVVVVAAVEAMNWLQKAAKLLASEVKCKKTKQVLKPAMPVYWVTPDGFPVWQE 740
Query: 898 Y-----RKLGRHTV-KTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-A 950
Y R++ + +Q R+++K+ ++Q + PNFVHS DGSH+ T V A
Sbjct: 741 YMIPETRRIDLMFLGDVRIQATVTVRDSDKIDARKQESGISPNFVHSQDGSHLRKTVVHA 800
Query: 951 CRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV-- 1007
+ G+ FA +HDS+ T M + +RE VE YE N+L+ F++ F +
Sbjct: 801 AERYGIEFFALIHDSFGTIPAHAGAMFKAVRETMVETYES---NNVLEDFREQFMDQLHE 857
Query: 1008 -----FPPLPERGDFDLREVLGSPYFF 1029
PP+PE G D+RE+L S + F
Sbjct: 858 SQLDKMPPIPEMGTLDIREILKSQFAF 884
>gi|289976616|gb|ADD21661.1| DNA-dependent RNA polymerase [Caulobacter phage Cd1]
Length = 817
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 231/872 (26%), Positives = 388/872 (44%), Gaps = 88/872 (10%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
+ + Q+++E + ++ + ++ E A + PY +++ + PL I + +
Sbjct: 1 MTVTQIELERQMYDFGRSRAERMMSKNEEAGRASSNPYAAAIYRRFVLPLAAMIQDDLDN 60
Query: 252 CRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE----------HGRARVVQAAC 301
+ + K A+A + + A+ ++ +T+ +G L+ GG H AR Q A
Sbjct: 61 RKPGRRK-AHAVLLEGMDAEALSYLTVRSALGALLGGGTNMSGGRFGDYHPTAR--QLAL 117
Query: 302 IIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLP 361
+G +I E + F E T V +L K + K+
Sbjct: 118 DLGKSIYHEKCLALFAEADPALFYT------------LVNDLDRRLSKSERHRMTVFKMQ 165
Query: 362 AVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALR 421
A + V D WG + +VG+ +++LL +++ + A + A
Sbjct: 166 AEKNGVPVPD----WGTAGKTQVGAYLLDLLEALGMVETQQSLIPSARKEKIRASIEVKM 221
Query: 422 TVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGY-DKGAHF--- 477
T K V P Y+P + P+ W D G H
Sbjct: 222 TTDTLELVSRIKDHVSATTPY---------------YLPCVEKPMDWVSIRDGGFHTKEM 266
Query: 478 -FLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG 536
L + +++ G + + D + + V A++ +T W+VN +L + ++ +
Sbjct: 267 RRLQPFAIKSAGLRSEEDF----EEGDVSTVLGAINACQSTAWQVNGVMLDTIRQV-AKH 321
Query: 537 GRLADLVDRNDVPLPEKPE-----------TEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ +++ + + P P KP+ + + W+ + E + R ++
Sbjct: 322 FDMEEILSQAEFPAPPKPDWLSDQKFDHMTPPQQEEFIHWKREKAQWFTEMKLRGTKYGR 381
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGK-S 644
SVA K +D + Y+ + DFRGR Y ++ GSD+ + ++ FA+G+ L
Sbjct: 382 FFTATSVADKFRDFDEIYFVYFADFRGRLYAQTTGISPQGSDMQKALIRFAKGKALDTVE 441
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
W IH AN + G DK S + R+ +T+ + + I A+ P+ +W +A+ P Q L
Sbjct: 442 AERWFCIHGANKF--GFDKASLDDRVQWTKTNHNIIMACAEDPISNE-FWQEADTPLQFL 498
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A C E +P TF S +P+ DG+CNGLQ+++A+ RD +G A NLV P D+
Sbjct: 499 AWCFEYAEW--RYNPHTFESRLPIGMDGTCNGLQNFSAMLRDEVGGKATNLVPGALPNDI 556
Query: 765 YSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQ 824
Y + A + + R ++ D A + R K L ++R LVK++VMT YG T D
Sbjct: 557 YK-MVAELTEHLLRLSEPDDAGY----RDKWLAHGINRTLVKRSVMTLPYGSTRFSCADF 611
Query: 825 IKRRLKERG-APMEEAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAK-IIASEN 881
I + G P E +G A+ + + A+G++ AR M+WL +CAK II
Sbjct: 612 IVGDYMKMGKCPEFAKEEYGKAAQFLSHFVWDAIGDVVVKAREAMNWLQQCAKTIIKDGE 671
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSL---QILTLQRETEKVMVKRQRTAFPPNFVHS 938
+ VRW +P G PVVQ Y H ++T L L L+ +T+ R + PNFVHS
Sbjct: 672 ETVRWVSPSGFPVVQLYAARQEHRIRTHLCGSAFLRLEVDTDIPDRNRHKNGVAPNFVHS 731
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
D +H+ + AVA G+ A +HD Y THA D RI+RE FV +YE D
Sbjct: 732 CDAAHLHLVAVAAAAEGMDLALIHDDYGTHAADAARFYRIIREVFVAMYEG------CDP 785
Query: 999 FQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
++ + PP PE G +LR+VL S YFF+
Sbjct: 786 LKEFAARYDMPPPPEMGTLNLRDVLNSAYFFS 817
>gi|1236334|gb|AAB01079.1| T3/T7-like RNA polymerase, partial [Oryza sativa Japonica Group]
Length = 167
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 114/167 (68%), Positives = 142/167 (85%)
Query: 805 VKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAAR 864
VKQTVMTSVYGVTYIGAR QI +RL+E+G ++ L+ SCYA +VTL ALG+MFQ+AR
Sbjct: 1 VKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSAR 60
Query: 865 GIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV 924
GIM+WLG+CAK+IASEN PV+WT+P+GLPVVQPY+K + ++TSLQ L L+RE + + +
Sbjct: 61 GIMAWLGDCAKMIASENHPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIAL 120
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACD 971
+RQ+ AFPPNFVHSLD SHMMMTA+AC+KAGL FAGVHDS+W HACD
Sbjct: 121 QRQKAAFPPNFVHSLDSSHMMMTAIACKKAGLHFAGVHDSFWVHACD 167
>gi|194100256|ref|YP_002003454.1| gp1 [Enterobacteria phage BA14]
gi|193201251|gb|ACF15731.1| gp1 [Enterobacteria phage BA14]
Length = 883
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 228/798 (28%), Positives = 374/798 (46%), Gaps = 122/798 (15%)
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
A IG +IE E+R + +++E N V QE L K+V + KK
Sbjct: 139 ATKIGRSIEDELRFGRI------------RDEEAKHFKNHV---QEALNKRVGIVYKKAF 183
Query: 360 LPAV--RRIVKGQ--DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
+ AV + + GQ + W + VG R++ELL +
Sbjct: 184 MQAVEGKMLDAGQLQTKWTTWTPEESIHVGVRMLELLIGST------------------- 224
Query: 416 FTHALRTVSKETKGGSKKYG-VIECNPLVLKGLERTARHM--VIP-YMPMLVPPVKWTGY 471
L + + G +K G I+ + L + A + + P Y P +VPP WT
Sbjct: 225 ---GLVELHRPFAGNVEKDGEYIQLTEQYVDLLSKRAGALAAIAPMYQPCVVPPKPWTSP 281
Query: 472 DKGAHFFL---PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G ++ P ++RT G+K+ ++R + V++A++ NT W++N +VL+V
Sbjct: 282 VGGGYWAAGRKPLSLVRT-GSKK---GLERYNDVYMPEVYKAVNIAQNTPWKINKKVLAV 337
Query: 529 LDRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRC 584
++ I W C ++R ++P+ PE +T +EA L+ W+ + ++ + R S+R
Sbjct: 338 VNEIVNWKHCPVDDVPALERGELPIKPEDIDT-NEAALKAWKKAASAIYRKEKARVSRRM 396
Query: 585 DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS 644
+E L A K + ++P N+D+RGR Y + P N G+D+ +G+L A+G+ +G
Sbjct: 397 SMEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVD 455
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
G +WLKIH AN GVDK+ R+ F +++ ++I A P+ WW + + PF L
Sbjct: 456 GYYWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFL 512
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A C + +P+ DGSC+G+QH++A+ RD +G AVNL+ ++ D+
Sbjct: 513 AFCFEYAGVQHHGM--KYNCSLPLAFDGSCSGIQHFSAMLRDEIGGRAVNLLPSKEVQDI 570
Query: 765 YSGIAARVLVIIQRD------------AQRDPAVFPDALR-------AKLLLSQVDRKLV 805
Y +A RV I+++D +D + L+ + L V RK+
Sbjct: 571 YRIVAERVNEILKQDVINGTDNEVEIVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVT 630
Query: 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQ 861
K++VMT YG G RDQ+ + + +F A+ Y AK+ A+
Sbjct: 631 KRSVMTLAYGSKEYGFRDQVLEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWNAVTVTVV 690
Query: 862 AARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTS 909
AA M+WL AK++A+E + V W TP G PV Q Y+K V+T
Sbjct: 691 AAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAVHWVTPDGFPVWQEYKK----PVQTR 746
Query: 910 LQILTLQR-------ETEK---VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GL-T 957
L ++ L + T K + ++Q + PNFVHS+DGSH+ MT V + G+ +
Sbjct: 747 LNLMFLGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVVRSYEVYGVES 806
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYE-----MPIFENLLDSFQKS-FPKLVFPPL 1011
FA +HDS+ T D + + +RE V YE +E D +S K+ P +
Sbjct: 807 FALIHDSFGTIPADAGNLFKAVRETMVNTYEENDVLADFYEQFADQLHESQLDKM--PEM 864
Query: 1012 PERGDFDLREVLGSPYFF 1029
P +G DL+E+L S + F
Sbjct: 865 PAKGSLDLQEILKSDFAF 882
>gi|225626353|ref|YP_002727849.1| putative phage-specific RNA polymerase [Pseudomonas phage phikF77]
gi|225594862|emb|CAX63147.1| putative phage-specific RNA polymerase [Pseudomonas phage phikF77]
Length = 816
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 188/595 (31%), Positives = 290/595 (48%), Gaps = 38/595 (6%)
Query: 461 MLVPPVKWTGYDKGAHFFLPS-----YVMRT-HGAKQQRDT-VKRTPKKQLEPVFEALDT 513
ML PP W + G ++ + V RT H K+ R ++ + ++ V+EA++
Sbjct: 233 MLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNV 292
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP-------ETEDEAQLRKW- 565
L + + +N+ V +++R+++ GG + + R PE P E E +L +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 566 QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG--FYYPHNVDFRGRAYPMHPYLNH 623
+WK R+V + + ++ R +++ G Y+P +VD RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
GSD+ + L F E R LGK GL+WLK+H+AN + G DK+ + R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHEKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 684 ADK-PLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
D+ P + +AE P +A + L A S +PE + S VH D +C+GLQHY+A
Sbjct: 469 LDEGPENYPSLFPEAESPLCAIAGLLELRAAYASGNPEGYASGFIVHMDATCSGLQHYSA 528
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA-LRAKLLL---S 798
+ RD +G A VNL+ P + I +RVL ++ +RD A D R LL +
Sbjct: 529 ILRDEIGGAYVNLL---PPGLAKADIYSRVLGLVNEALERDRAEGADGEARGYALLWDKA 585
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA-ELFGASCYAAKVTLTALG 857
+ R L K+ MT VYG T+ G D L E G + E + Y A + L A+
Sbjct: 586 GLTRNLTKKPCMTLVYGTTFKGVVDHCLDYLDESGVEIPEGVPSYRLGSYMATLILDAIR 645
Query: 858 EMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT---SLQILT 914
E +A M WL AK + ++ + WTTPLG+ V Q Y K V+ +++ +T
Sbjct: 646 ETVPSAVFAMEWLQRLAKALPDASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVT 705
Query: 915 LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
L +++ R PNFVH LD SH+ +TA+AC G+ +HDS T+A DVD
Sbjct: 706 LYEAKDELDPLRNANGIAPNFVHGLDSSHLGLTALACAAEGIPIQAIHDSMGTYAGDVDR 765
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
M+ +RE+FV +Y P +L + P P RG +L V S FF
Sbjct: 766 MHVHIREQFVTMYSGPC---VLVELARQLGVEATP--PRRGSLNLEAVRDSWAFF 815
>gi|212671387|ref|YP_002308386.1| RNA polymerase [Kluyvera phage Kvp1]
gi|211997231|gb|ACJ14548.1| RNA polymerase [Kluyvera phage Kvp1]
Length = 882
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 228/798 (28%), Positives = 371/798 (46%), Gaps = 122/798 (15%)
Query: 300 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 359
A IG +IE E+R + +++E N V QE L K+V + KK
Sbjct: 138 ATKIGRSIEDELRFGRI------------RDEEAKHFKNHV---QEALNKRVGIVYKKAF 182
Query: 360 LPAV--RRIVKGQ--DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPA 415
+ AV + + GQ + W + VG R++ELL +
Sbjct: 183 MQAVEGKMLDAGQLQTKWTTWTPEESIHVGVRMLELLIGST------------------- 223
Query: 416 FTHALRTVSKETKGGSKKYG-VIECNPLVLKGLERTARHM--VIP-YMPMLVPPVKWTGY 471
L + + G +K G I+ + L + A + + P Y P +VPP WT
Sbjct: 224 ---GLVELHRPFAGNVEKDGEYIQLTEQYVDLLSKRAGALAAIAPMYQPCVVPPKPWTSP 280
Query: 472 DKGAHFFL---PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
G ++ P ++RT G+K+ ++R + V++A++ NT W++N +VL+V
Sbjct: 281 VGGGYWAAGRKPLSLVRT-GSKK---GLERYNDVYMPEVYKAVNIAQNTPWKINKKVLAV 336
Query: 529 LDRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRC 584
++ I W C ++R ++P+ PE +T +EA L+ W+ + ++ + R S+R
Sbjct: 337 VNEIVNWKHCPVEDVPALERGELPVKPEDIDT-NEAALKAWKKAASAIYRKEKARVSRRM 395
Query: 585 DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS 644
+E L A K + ++P N+D+RGR Y + P N G+D+ +G+L A+G+ +G
Sbjct: 396 SMEFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVD 454
Query: 645 GLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704
G +WLKIH AN GVDK+ R+ F +++ ++I A P+ WW + + PF L
Sbjct: 455 GYYWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFL 511
Query: 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADV 764
A C + +P+ DGSC+G+QH++A+ RD +G AVNL+ ++ D+
Sbjct: 512 AFCFEYAGVQHHGM--NYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDI 569
Query: 765 YSGIAARV------LVIIQRDAQRDPAVFPDA-------------LRAKLLLSQVDRKLV 805
Y +A RV VI D + + D L + L V RK+
Sbjct: 570 YRIVAERVNEMLREAVINGTDNEVETVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVT 629
Query: 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQ 861
K++VMT YG G RDQ+ + + +F A+ Y AK+ ++
Sbjct: 630 KRSVMTLAYGSKEYGFRDQVLEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWESVTVTVV 689
Query: 862 AARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTS 909
AA M+WL AK++A+E + V W TP G PV Q Y+K V+T
Sbjct: 690 AAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAVHWVTPDGFPVWQEYKK----PVQTR 745
Query: 910 LQILTLQR-------ETEK---VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GL-T 957
L ++ L + T K + ++Q + PNFVHS+DGSH+ MT V + G+ +
Sbjct: 746 LNLMFLGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVVRSNEVYGVES 805
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYE-----MPIFENLLDSFQKS-FPKLVFPPL 1011
FA +HDS+ T D + + +RE V YE +E D +S K+ P +
Sbjct: 806 FALIHDSFGTIPADAGNLFKAVRETMVNTYEENDVLADFYEQFADQLHESQLDKM--PEM 863
Query: 1012 PERGDFDLREVLGSPYFF 1029
P +G DL+E+L S + F
Sbjct: 864 PAKGSLDLQEILKSDFAF 881
>gi|158345053|ref|YP_001522818.1| putative DNA-dependent RNA polymerase [Pseudomonas phage LKD16]
gi|114796406|emb|CAK25962.1| putative DNA-dependent RNA polymerase [Pseudomonas phage LKD16]
Length = 816
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 188/597 (31%), Positives = 292/597 (48%), Gaps = 42/597 (7%)
Query: 461 MLVPPVKWTGYDKGAHFFLPS-----YVMRT-HGAKQQRDT-VKRTPKKQLEPVFEALDT 513
ML PP W + G ++ + V RT H K+ R ++ + ++ V+EA++T
Sbjct: 233 MLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQIQLRHLGRDKMPRVYEAVNT 292
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP-------ETEDEAQLRKW- 565
L + + +N+ V ++DR+++ GG + + R PE P E E +L +
Sbjct: 293 LQSVAYEINHDVYEIIDRVFTSGGGVLGIPKRTYPDKPEFPLGDEWSKENASEQELESFN 352
Query: 566 QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG--FYYPHNVDFRGRAYPMHPYLNH 623
+WK R+V + + ++ R +++ G Y+P +VD RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
GSD+ + L F E R LGK GL+WLK+H+AN + G DK+ + R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHEKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 684 ADK-PLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
++ P + + E P +A + L A S +PE + S VH D +C+GLQHY+A
Sbjct: 469 LEEGPENYPNLFPEDESPLCAIAGLLELRAAYASGNPEGYASGFIVHMDATCSGLQHYSA 528
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA-LRAKLLL---S 798
+ RD +G A VNL+ P + I +RVL ++ +RD A D R LL +
Sbjct: 529 ILRDEIGGAYVNLL---PPGLAKADIYSRVLGLVSESLERDRAEGTDGEARGYALLWDKA 585
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE---AELFGASCYAAKVTLTA 855
+ R L K+ MT VYG T+ G D L E G + E + L G+ Y A + L A
Sbjct: 586 GLTRSLTKKPCMTLVYGTTFKGVVDHCLDYLDESGVEIPEGVPSYLLGS--YMATLILDA 643
Query: 856 LGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT---SLQI 912
+ E +A M WL AK + ++ + WTTPLG+ V Q Y K V+ +++
Sbjct: 644 IRETVPSAVFAMEWLQRLAKALPDASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEY 703
Query: 913 LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
+TL +++ R PNFVH LD SH+ + A+AC G+ +HDS T+A DV
Sbjct: 704 VTLYEAKDELDPLRNANGIAPNFVHGLDSSHLGLVALACAAEGIHIQAIHDSMGTYASDV 763
Query: 973 DEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
D M+ +RE+F+ +Y P +L + P P RG +L V S FF
Sbjct: 764 DRMHVHIREQFITMYSGPC---VLVELARQLGVEATP--PRRGSLNLEAVRDSWAFF 815
>gi|223304|prf||0706231A polymerase,RNA
Length = 883
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 248/914 (27%), Positives = 404/914 (44%), Gaps = 145/914 (15%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH 418
+ G + + W ++ VG R IE+L ++ + S Q A
Sbjct: 187 EADMLSEGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSSHRQNAG----------- 235
Query: 419 ALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHM--VIP-YMPMLVPPVKWTGYDKGA 475
V ++++ IE P + + A + + P + P +VPP WTG G
Sbjct: 236 ---VVGQDSE-------TIELAPEYAEAIAIRAGALAGISPMFQPCVVPPKPWTGITGGG 285
Query: 476 HFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
++ P ++RTH K + R + V++A++ NT W++N +VL+V + I
Sbjct: 286 YWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINRKVLAVANVI 341
Query: 533 --WSCGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
W + D+ ++R ++P+ KPE D WK + R + L
Sbjct: 342 ARWK-HYPVEDIPAIEREELPM--KPEDIDMNPEALTAWKRLPLLCTARTGLASLAVSAL 398
Query: 589 K--LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646
LS + P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 399 SSCLSKPISLLTIRPPGSPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEGY 457
Query: 647 HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 458 YWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAF 514
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 515 CFEYAGVRHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 767 GIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVKQ 807
+A +V I+Q DA + D AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAHGVTRSVTKR 632
Query: 808 TVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAA 863
+VMT YG G R Q+ + + +F A+ Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPATDSGKGPMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 864 RGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGESSRKRCAVHWVTPDGFPVWQEYQK----PIQTRLN 748
Query: 912 ILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TFA 959
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +FA
Sbjct: 749 LMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFA 808
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPERG 1015
+HDS+ T D + + +RE V+ YE + + D F + P LP +G
Sbjct: 809 LIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKG 868
Query: 1016 DFDLREVLGSPYFF 1029
+ +LR++L S + F
Sbjct: 869 NLNLRDILESDFAF 882
>gi|32128444|ref|NP_858979.1| DNA-dependent RNA polymerase; phage monosubunit type [Xanthomonas
phage Xp10]
gi|31788507|gb|AAP58699.1| 32L [Xanthomonas phage Xp10]
Length = 746
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 189/599 (31%), Positives = 284/599 (47%), Gaps = 50/599 (8%)
Query: 440 NPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRT 499
+ + K +ER A Y+P + P+ WT Y G + + K + + K
Sbjct: 190 DDITAKTIERAAY-----YLPCVEQPMPWTSYASGGWHTAEMRRLMPYVIKGKGEYHKAL 244
Query: 500 PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDE 559
L +++L T WRVN R+L LD+I G+++ +D + P+ +
Sbjct: 245 QAADLSQELACINSLQRTAWRVNARMLDALDQI---AGKIS--IDE----IVAVPDADAP 295
Query: 560 AQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
L++ K +N K+ R +VA K Y+ + DFRGR Y M
Sbjct: 296 RWLKEEHRKTKNRYKQVR-------------TVANKFLAYPAIYFVYFCDFRGRKYAMGS 342
Query: 620 YLNHLGSDLCRGILEFAEGRTL-GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLD 678
+N GSDL + +LEFA+G L + + W I +N Y G DK S R+ + ++ +
Sbjct: 343 GINPQGSDLQKCLLEFAKGMPLKDQQAVDWFMITGSNRY--GFDKCSLADRVQWCHDNHN 400
Query: 679 DIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQ 738
+I A+ PL G +W A P Q LA C A P F+S + DG+CNGLQ
Sbjct: 401 EIIACAEDPLTGL-FWKGASKPLQFLAWCFEYA-AFIEQGP-AFVSRVSADMDGTCNGLQ 457
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS 798
H++A+ RD +GAAA NLV + P+D+Y+ +A + +Q DA+RD PD L K L
Sbjct: 458 HFSAMLRDEIGAAATNLVPADLPSDIYAIVARKTQERLQ-DAERD----PDGLVEKWLQH 512
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRR--LKERGAPMEEAELFGASCYAAKVTLTAL 856
++R + K++ MT YG T + ++ LK + + +E A+ + A+
Sbjct: 513 GINRSITKRSTMTLPYGSTRFSSAGFVRDDYLLKGKAPEFDSSEHNKAAQLLSTFIWPAI 572
Query: 857 GEMFQAARGIMSWLGECAKIIASENQP-VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
GE AR M WL AK + P + WTTP G PV Q Y + V+T L
Sbjct: 573 GETVVKAREGMDWLQTAAKQAIKQGAPALSWTTPTGFPVHQVYNVMEIKKVRTKLAGAAQ 632
Query: 916 QR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACD 971
R + K+ PNFVHS+D SH+ T AC G+ FA +HDSY H C
Sbjct: 633 IRVYLPGDVADPKKHAAGAAPNFVHSMDASHLTATVNACAAVGIKDFAMIHDSYAVHCCH 692
Query: 972 VDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ R+LRE+FV++Y ++L F S V P PE G DL +V+ + +FF+
Sbjct: 693 ATTLARVLREEFVKMY---TGHDVLAEFAASTG--VDLPRPEPGSLDLGQVMEAEFFFS 746
>gi|241568699|ref|XP_002402558.1| DNA-directed RNA polymerase 2A, putative [Ixodes scapularis]
gi|215500047|gb|EEC09541.1| DNA-directed RNA polymerase 2A, putative [Ixodes scapularis]
Length = 389
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 159/388 (40%), Positives = 211/388 (54%), Gaps = 20/388 (5%)
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+K++ E +S CD KLS+A + + F + R P + +G D+ RG
Sbjct: 16 LKRKRAEMYSLWCDALYKLSIANHVTINKAFL--PKLPCSRRHLLCSPGESAVGRDVVRG 73
Query: 632 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
IL FA G LG+ GL WLK+HL NL G + RL F L +I DSAD P+ GR
Sbjct: 74 ILLFARGEPLGEKGLDWLKVHLINL-TGLKKREPASERLKFANKMLPEILDSADNPMTGR 132
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
RWW +E+P+Q LA C + A+RS P ++ H+PVHQDGSCNGLQHYAALGRD GA
Sbjct: 133 RWWASSEEPWQTLACCREVAAAVRSPDPRRYVCHLPVHQDGSCNGLQHYAALGRDAHGAR 192
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNL+ ++P DVYSG+AA V +DA A+ A++L + RK+VKQTVMT
Sbjct: 193 QVNLLPEDRPQDVYSGVAAMVERERTKDAANGVAI------AQVLEGFIKRKVVKQTVMT 246
Query: 812 SVYGVTYIGARDQIKRRLKE-RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
VYGVT GA QI ++LK+ P E + AS Y + T +L EMF A R I
Sbjct: 247 VVYGVTRFGAHLQIMKQLKDLEDFPQEHC--WAASHYLVQRTFLSLQEMFTATREIQVRA 304
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKL--GRHTVKTSLQILTLQRETEKVM---VK 925
E +I ++ T+ L L G + + +R M V
Sbjct: 305 TESPRITGPA---LKCTSEYVLSSWALEECLFPGSWDQMVHSLLASYKRSLNFFMWPNVM 361
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRK 953
+Q+ AFPPNF+HSLD SHMM+TA+ C K
Sbjct: 362 KQKNAFPPNFIHSLDSSHMMLTALFCHK 389
>gi|148727210|ref|YP_001285702.1| p32 [Xanthomonas phage Xop411]
gi|116583510|gb|ABK00180.1| p32 [Xanthomonas phage Xop411]
Length = 746
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 193/620 (31%), Positives = 302/620 (48%), Gaps = 53/620 (8%)
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFL 479
+ TV+ +T G S++ + + + K +ER A Y+P + P+ WT Y G
Sbjct: 171 VSTVNDDTLGLSEEAHSL-IDDITTKTIERAAY-----YLPCVEQPMPWTSYSNGGWHTA 224
Query: 480 PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL 539
+ + K + D + L ++ L T WRVN+R+L LD+I G++
Sbjct: 225 EMRRLMPYLIKGKGDYHRALQAADLSQELACINALQRTAWRVNSRMLDALDQI---AGKI 281
Query: 540 ADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
+ + + VP + P +W ++ ++ R R+ Q SVA K
Sbjct: 282 S-IDEIVAVPDADAP---------RW---LKEEHRKTRNRYKQVS------SVANKFLAY 322
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL-GKSGLHWLKIHLANLYA 658
Y+ + DFRGR Y M +N GSDL + +LEFA+G L + + W I AN Y
Sbjct: 323 PAIYFVYFCDFRGRKYAMGSGINPQGSDLQKCLLEFAKGMPLKDQHAVDWFMITGANRY- 381
Query: 659 GGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSS 718
G DK S R+ + ++ ++I A+ PL G +W A P Q LA C+ + +
Sbjct: 382 -GFDKCSLADRVQWCHDNHNEIIACAEDPLTGL-FWKGASKPLQFLAWCLEYRDFIEQGP 439
Query: 719 PETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQR 778
F+S + DG+CNGLQH++A+ RD +G AA NL+ + P+D+Y+ +A R V +++
Sbjct: 440 --AFVSRVSADMDGTCNGLQHFSAMLRDEVGGAATNLLPADLPSDIYAIVAKRTQVRLEQ 497
Query: 779 DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-APME 837
A++D D L K L ++R + K++ MT YG T + ++ +G AP
Sbjct: 498 -AEKD----EDGLIDKWLSHGINRSVTKRSTMTLPYGSTRFSSAGFVRDDYLRKGKAPEF 552
Query: 838 EAELFG-ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP-VRWTTPLGLPVV 895
+A L A+ + A+GE AR M WL AK + P + WTTP G PV
Sbjct: 553 DAALHNKAAQLLSTFIWPAIGETVVKAREGMDWLQTAAKQAIKQGAPALSWTTPTGFPVW 612
Query: 896 QPYRKLGRHTVKT----SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 951
Q Y ++ V+T S QI + + K+ PNFVHS+D +H+ T AC
Sbjct: 613 QVYNQVVVKKVRTKMAGSAQI-RVYVPGDVPDAKKHAAGAAPNFVHSMDAAHLTATVNAC 671
Query: 952 RKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
+AG+ FA +HDSY H C + R+LR++FV++Y ++L F S V P
Sbjct: 672 AEAGIKDFAMIHDSYAVHCCHAATLARVLRDEFVKMYTG---HDVLAEFAASTG--VDLP 726
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
PE G DL +VL + +FF+
Sbjct: 727 RPEPGSLDLDQVLEADFFFS 746
>gi|195546732|ref|YP_002117810.1| putative DNA-dependent RNA polymerase [Pseudomonas phage PT2]
gi|165880741|gb|ABY70996.1| putative DNA-dependent RNA polymerase [Pseudomonas phage PT2]
Length = 815
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 184/594 (30%), Positives = 285/594 (47%), Gaps = 37/594 (6%)
Query: 461 MLVPPVKWTGYDKGAHFFLPS-----YVMRT-HGAKQQRDT-VKRTPKKQLEPVFEALDT 513
ML PP W + G ++ + V RT H K+ R ++ + ++ V+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNA 292
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP-------ETEDEAQLRKW- 565
L + + +N+ V +++R+++ GG + + R PE P E E +L +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 566 QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG--FYYPHNVDFRGRAYPMHPYLNH 623
+WK R+V + + ++ R +++ G Y+P +VD RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
GSD+ + L F E R LGK GL+WLK+H+AN + G DK+ + R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHEKRALGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 684 ADK-PLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
D+ P + + E P +A + L A S PE + S VH D +C+GLQHY+A
Sbjct: 469 LDEGPENYPGLFPEDESPLCAIAGLLELRAAYASGQPERYQSGFIVHMDATCSGLQHYSA 528
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLL---SQ 799
+ RD +G A VNL+ P + I +RVL ++ RD R +L +
Sbjct: 529 ILRDEVGGAYVNLL---PPGLTKADIYSRVLALVAGSLARDREGAEGEARGYAVLWDKAG 585
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA-ELFGASCYAAKVTLTALGE 858
+ R L K+ MT VYG T+ G D L E G + E + Y A + L A+ E
Sbjct: 586 LSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDEAGLEIPEGIPSYRLGSYMATLILDAIRE 645
Query: 859 MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT---SLQILTL 915
+A M WL AK + ++ + WTTPLG+ V Q Y K V+ +++ +TL
Sbjct: 646 TVPSAVFAMEWLQRLAKALPDASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVTL 705
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+++ R PNFVH LD SH+ +TA+AC G+ +HDS T+A DVD M
Sbjct: 706 YEAKDELDPVRNANGIAPNFVHGLDSSHLGLTALACAAEGIPIQAIHDSMGTYAADVDRM 765
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ +RE+F+ +Y P +L K P P RG +L V S FF
Sbjct: 766 HVHIREQFIAMYSGPC---VLVELAKQLGIEATP--PRRGSLNLEAVRDSWAFF 814
>gi|167600472|ref|YP_001671971.1| phage-specific RNA polymerase [Pseudomonas phage LUZ19]
gi|161168335|emb|CAP45499.1| phage-specific RNA polymerase [Pseudomonas phage LUZ19]
Length = 815
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 183/594 (30%), Positives = 285/594 (47%), Gaps = 37/594 (6%)
Query: 461 MLVPPVKWTGYDKGAHFFLPS-----YVMRT-HGAKQQRDT-VKRTPKKQLEPVFEALDT 513
ML PP W + G ++ + V RT H K+ R ++ + ++ V+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNA 292
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP-------ETEDEAQLRKW- 565
L + + +N+ V +++R+++ GG + + R PE P E E +L +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 566 QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG--FYYPHNVDFRGRAYPMHPYLNH 623
+WK R+V + + ++ R +++ G Y+P +VD RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
GSD+ + L F E R LGK GL+WLK+H+AN + G DK+ + R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHEKRALGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 684 ADK-PLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
D+ P + + E P +A + L A S PE + S VH D +C+GLQHY+A
Sbjct: 469 LDEGPENYPGLFPEDESPLCAIAGLLELRAAYASGQPERYQSGFIVHMDATCSGLQHYSA 528
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLL---SQ 799
+ RD +G A VNL+ P + I +RVL ++ RD R +L +
Sbjct: 529 ILRDEVGGAYVNLL---PPGLAKADIYSRVLALVAESLARDREGAEGEARGYAVLWDKAG 585
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA-ELFGASCYAAKVTLTALGE 858
+ R L K+ MT VYG T+ G D L E G + E + Y A + L A+ E
Sbjct: 586 LSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDEAGLEIPEGIPSYRLGSYMATLILDAIRE 645
Query: 859 MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT---SLQILTL 915
+A M WL A+ + ++ + WTTPLG+ V Q Y K V+ +++ +TL
Sbjct: 646 TVPSAVFAMEWLQRLARALPDASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVTL 705
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+++ R PNFVH LD SH+ +TA+AC G+ +HDS T+A DVD M
Sbjct: 706 YEAKDELDPVRNANGIAPNFVHGLDSSHLGLTALACAAEGIPIQAIHDSMGTYAADVDRM 765
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ +RE+F+ +Y P +L K P P RG +L V S FF
Sbjct: 766 HVHIREQFIAMYSGPC---VLVELAKQLGIEATP--PRRGSLNLEAVRDSWAFF 814
>gi|33300837|ref|NP_877465.1| putative DNA-dependent RNA polymerase [Pseudomonas phage phiKMV]
gi|195546670|ref|YP_002117751.1| DNA-dependent RNA polymerase [Pseudomonas phage PT5]
gi|387935474|ref|YP_006299950.1| RNA polymerase [Pseudomonas phage vB_Pae-TbilisiM32]
gi|33284808|emb|CAD44217.1| putative DNA-dependent RNA polymerase [Enterobacteria phage phiKMV]
gi|158187631|gb|ABW23108.1| DNA-dependent RNA polymerase [Pseudomonas phage PT5]
gi|378407720|gb|AFB83282.1| RNA polymerase [Pseudomonas phage vB_Pae-TbilisiM32]
Length = 816
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 184/595 (30%), Positives = 287/595 (48%), Gaps = 38/595 (6%)
Query: 461 MLVPPVKWTGYDKGAHFFLPS-----YVMRT-HGAKQQRDT-VKRTPKKQLEPVFEALDT 513
ML PP W + G ++ + V RT H K+ R ++ + ++ V+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQAQLRHLGQDKMPKVYEAVNV 292
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP-------ETEDEAQLRKW- 565
L + + +N V +++R+++ GG + + R PE P E E +L +
Sbjct: 293 LQSVAYEINRDVYEIIERVFNSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 566 QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEG--FYYPHNVDFRGRAYPMHPYLNH 623
+WK R+V + + ++ R +++ G Y+P +VD RGR Y N
Sbjct: 353 RWK-RSVHRWYTGEREHTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
GSD+ + L F + R LGK GL+WLK+H+AN + G DK+ + R A+ + DD +
Sbjct: 411 QGSDIAKACLRFHDKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDERWDDFQRA 468
Query: 684 -ADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
A+ P + +AE P +A + L A S +PE + S VH D +C+GLQHY+A
Sbjct: 469 LAEGPENYPGLFPEAESPLCAIAGLLELRAAYASGNPEGYRSGFIVHMDATCSGLQHYSA 528
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD--PAVFPDALRAKLLLSQ- 799
+ RD +G A VNL+ P + I +RVL ++ +RD P +A LL +
Sbjct: 529 ILRDEIGGAYVNLL---PPGLAKADIYSRVLGLVNESLERDRAPGAEGEARGYALLWDKA 585
Query: 800 -VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA-ELFGASCYAAKVTLTALG 857
+ R L K+ MT VYG T+ G D L E G + E + Y A + L A+
Sbjct: 586 GLSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDESGVEIPEGVPSYRLGSYMATLILDAIR 645
Query: 858 EMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT---SLQILT 914
E +A M WL AK + ++ + W TPLG+ V Q Y K V+ +++ +T
Sbjct: 646 ETVPSAVFAMEWLQRLAKALPDASKDLHWITPLGMQVFQSYPKTEEVRVRLRAEAVEYVT 705
Query: 915 LQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDE 974
L +++ R PNFVH LD SH+ +TA+AC + +HDS T+A DVD
Sbjct: 706 LYEAKDELDPMRNANGIAPNFVHGLDSSHLGLTALACAAEDIPIQAIHDSMGTYASDVDR 765
Query: 975 MNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
M+ +RE+F+ +Y P +L K P P RG +L V S FF
Sbjct: 766 MHVHIREQFIAMYSGPC---VLVELAKQLGVEATP--PRRGSLNLEAVRDSWAFF 815
>gi|224108381|ref|XP_002333403.1| predicted protein [Populus trichocarpa]
gi|222836443|gb|EEE74850.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 128/206 (62%), Positives = 150/206 (72%), Gaps = 13/206 (6%)
Query: 113 MGRTSFGVLKNDNF--------WCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKE 164
MG+ SF L+N +CPRGY +VAEA+SSTDVE++VS +E+QEL EM+KE
Sbjct: 1 MGKPSFIFLRNSGSTNGNRCGGFCPRGYVSVAEALSSTDVEDNVSGADEVQELQPEMRKE 60
Query: 165 EQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLA 224
E+ R R R G+GS K+R+L+ RQVKIE EAWE A EY+ELL DMCE KLA
Sbjct: 61 EEH-----FSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLA 115
Query: 225 PNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGL 284
PNLPYMKSLFLGWFEP DAIAKEQE RM K + YAPYFD LPAD M+VI MH+L +
Sbjct: 116 PNLPYMKSLFLGWFEPFTDAIAKEQELIRMGKSRQGYAPYFDLLPADKMSVIAMHQLAAM 175
Query: 285 LMTGGEHGRARVVQAACIIGDAIEQE 310
+MTGGEHG ARVV AAC+IGDAIE E
Sbjct: 176 VMTGGEHGCARVVTAACMIGDAIELE 201
>gi|15505|emb|CAA24333.1| unnamed protein product [Enterobacteria phage T7]
Length = 883
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 246/917 (26%), Positives = 397/917 (43%), Gaps = 151/917 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++ R
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKTRLASLAVSA 397
Query: 586 IELKLS--VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGK 643
+ LS ++ G R A M N G+D+ +G L A+G+ +GK
Sbjct: 398 LSSCLSKPISLLTIRPSGSLTTWTGAVRVYAVSM---FNPQGNDMTKGRLTLAKGKPIGK 454
Query: 644 SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQC 703
G +WLKIH AN GVDK+S R+ F E + ++I A PLE WW + + PF
Sbjct: 455 EGYYWLKIHGAN--CAGVDKVSFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCF 511
Query: 704 LAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPAD 763
LA C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D
Sbjct: 512 LAFCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQD 569
Query: 764 VYSGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKL 804
+Y +A +V I+Q DA + D AL + L V R +
Sbjct: 570 IYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSV 629
Query: 805 VKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMF 860
K++VMT YG G R Q+ + + +F A+ Y AK+ ++
Sbjct: 630 TKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTV 689
Query: 861 QAARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKT 908
AA M+WL AK++A+E + V W TP G PV Q Y+K ++T
Sbjct: 690 VAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQT 745
Query: 909 SLQILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL- 956
L ++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+
Sbjct: 746 RLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIE 805
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLP 1012
+FA +HDS+ T D + + +RE V+ YE + + D F + P LP
Sbjct: 806 SFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALP 865
Query: 1013 ERGDFDLREVLGSPYFF 1029
+G+ +LR++L S + F
Sbjct: 866 AKGNLNLRDILESDFAF 882
>gi|326424965|ref|YP_004286187.1| putative RNA polymerase [Pseudomonas phage phi15]
gi|325048369|emb|CBZ41982.1| putative RNA polymerase [Pseudomonas phage phi15]
Length = 882
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 194/678 (28%), Positives = 313/678 (46%), Gaps = 82/678 (12%)
Query: 417 THALRTVSKETKGGSKK-YGVIECNPLVLKGLERTARHMV---IPYMPMLVPPVKWTGYD 472
+ L +++ + G K+ V+E P ++ L + A + + P +VPP WT
Sbjct: 221 SSGLVRITRRSAGNVKEDCNVLELEPQWVEMLNQRAFTLAGVNTYHQPCVVPPRPWTRPV 280
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P+ +R H K ++R +E V++A++ NT W +N R+L V
Sbjct: 281 GGGYWGKGRRPTRFIRVHNKK----ALERYRDVDMEAVYKAVNIAQNTAWSINKRILEVA 336
Query: 530 DRIWSCGGR-LADLVDRNDVPLPEKP---ETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ + S ++ LP KP ET +EA+ W+ + V + R S+R
Sbjct: 337 EALASWTNVPISKWPKAETQELPVKPHDIETNEEAR-NAWKKQASGVYRSESSRVSRRMS 395
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L ARK D E Y+PHN+D+RGR Y + P N DL +G+L+ ++G +G+ G
Sbjct: 396 LETTLETARKFADFEAIYFPHNLDWRGRVYAL-PVFNPQRDDLTKGLLQASKGEPVGEDG 454
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+ WL IH AN GVDK+ + R + ++ I A+ PL W + + PF LA
Sbjct: 455 IKWLMIHGAN--TAGVDKVPFDERQQWVRDNERTILQCAEDPLTHTEW-MSMDSPFCFLA 511
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +S +P+ DGSC+G+QH++A+ RD G AVNL+ E+ D+Y
Sbjct: 512 FCFEWAGVVKDGP--NHVSALPIAFDGSCSGIQHFSAMLRDETGGRAVNLLPSERVQDIY 569
Query: 766 SGIAARVLVIIQRDAQRDPAVFPD-------------------ALRAKLLLSQVDRKLVK 806
++ V ++ DA D L A L VDR + K
Sbjct: 570 RLVSDGVNAALRDDAVHGTDDSTDVHVDEKTGEITERRVLGTRTLAAAWLAHGVDRSVTK 629
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG------ASCYAAKVTLTALGEMF 860
++VMT YG G DQ++ + P +A A+ Y A + ++G+
Sbjct: 630 RSVMTLAYGSKEFGFTDQVRDDII---TPAVDAGSLNFPQPQQAARYMAHLIWVSVGKTV 686
Query: 861 QAARGIMSWLGECAKIIAS---------------ENQPVRWTTPLGLPVVQPYRKLGRHT 905
AA M WL + AK++A+ PV W TP G PV Q YR
Sbjct: 687 VAAVEAMEWLQKSAKLLAAIVKEKKGPEKGKILKPAMPVYWVTPDGFPVWQEYRVQQAKR 746
Query: 906 VKTSLQ-----ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA-GLT-F 958
+ L T+ + +++ ++Q + PNFVHS+DG+H+ T V A +T F
Sbjct: 747 IDMILMGDVRLTATVLHQQDQIDARKQESGISPNFVHSMDGNHLRQTVVHAHDAYDITFF 806
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV-------FPPL 1011
A +HDS+ T ++ + +RE V YE ++L F++ F + P L
Sbjct: 807 ALIHDSFGTIPAKAGQLFKAVRETMVTAYE---HNDVLADFREQFIDQLHETQMDKMPEL 863
Query: 1012 PERGDFDLREVLGSPYFF 1029
P++G D+RE+L S + F
Sbjct: 864 PKKGTLDIREILKSQFAF 881
>gi|313211715|emb|CBY40657.1| unnamed protein product [Oikopleura dioica]
Length = 1238
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 176/647 (27%), Positives = 293/647 (45%), Gaps = 86/647 (13%)
Query: 459 MPMLVPPVKWTGYD---KGAHFFLPSYVMRTHGAK-------QQRDTVKRTPKKQLEPVF 508
MPML PP + +D KG P +++ + ++ ++ PK+++ +
Sbjct: 601 MPMLCPPRPYKIFDNQIKGQFLTSPRLLVKKKKMRNPKPFHIEESPGWRQYPKEKINHML 660
Query: 509 EALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRND-------VPLPEKPETEDEAQ 561
A + + W +N ++ VL+ + GG + D + T D
Sbjct: 661 TACNAISQQSWSINKEIVKVLEEVTKEGGMYTLKIPMRDCWDISHGIKSIVTTSTSDPLY 720
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
R Q + R ++ E + + + L + + + F+ P ++D+RGR YP +
Sbjct: 721 NRHKQVETR-LRVEEKGLY---VTFQSHLGLVKYFSQFDEFWLPLDLDYRGRIYPTTAIM 776
Query: 622 NHLGSDLCRGILEFAEGRTLGK------SGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
N L SD R F + + LG +G WL I +L + K +H L +
Sbjct: 777 NPLSSDPYRASFLFGKAKKLGGRQKNGFTGFDWLLIQCISL-SDKKKKATHGEMLHYAWQ 835
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCN 735
+ I DS PL G RWW E PFQ LA C+ + +A + P + + I VH DG+CN
Sbjct: 836 NFHAICDSGRDPLTGYRWWETCEKPFQVLAACMEIWKATQLDDPSQYETKISVHMDGTCN 895
Query: 736 GLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKL 795
G QHY+A+GRDT+GA N++ E+P+D Y I L ++ D + A F AK+
Sbjct: 896 GFQHYSAMGRDTIGAIFTNVLPTERPSDFYQSILDSALKLMDEDIAAEGANFEKLRVAKI 955
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTA 855
V R +VK+ VM YG++ GA D + L + + A+L + Y + ++
Sbjct: 956 ARKVVTRSIVKRPVMAIPYGLSVRGAVDICRNNLHGK---ISSADLTPVAQYIIRNLFSS 1012
Query: 856 LGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQ-PYRKLGRHTVKTSLQIL 913
+ F+ + I WL + +S+ P+ + +P+G PV Q Y+ + + KTS+++L
Sbjct: 1013 INSTFRNSMAIKQWLAGYNRYCSSKLGVPIEYISPMGFPVSQIGYKSMLQR--KTSMEVL 1070
Query: 914 TLQRETEKVMVKR------------QRT--AFPPNFVHSLDGSHMMMTAVACRKAG---- 955
+ ++ +R QR+ + PNFVH++D SH++M+ KA
Sbjct: 1071 VAAVDENRIKNERDNCYGVFPAADGQRSGNSLSPNFVHAIDASHLLMSYTMFAKAAKEER 1130
Query: 956 ---LTFAGVHDSYWTHACDVDEMNRILREKFVELYEM--PI------------------- 991
F +HDS+W H VD +N LRE F+++YE PI
Sbjct: 1131 GDEADFGSIHDSFWCHPSQVDLLNENLREAFIDMYEHFDPITTFAEHMENWVIPERFWPK 1190
Query: 992 -FENLLDSFQKSFPKL--------VFPPLPERGDFDLREVLGSPYFF 1029
FENL ++ KL ++ PE+G+ D+++V S YFF
Sbjct: 1191 RFENLPENVTTLENKLSHLERRNALYYNRPEKGEMDIQKVRDSKYFF 1237
>gi|18250966|dbj|BAB83932.1| T7 phage-type RNA polymerase [Adiantum capillus-veneris]
Length = 164
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/164 (70%), Positives = 133/164 (81%), Gaps = 1/164 (0%)
Query: 805 VKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAAR 864
VKQTVMTSVYGVTY+GAR QI RL+ER + ++ + F SCYAAK TL ALGEMF AAR
Sbjct: 1 VKQTVMTSVYGVTYVGARAQIMNRLQERPSINDDKQAFNLSCYAAKTTLEALGEMFTAAR 60
Query: 865 GIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETE-KVM 923
IM WLG+CAKI+AS+NQ V+WTTPLGLPVVQPYRK R V+TSLQIL L + +M
Sbjct: 61 IIMGWLGDCAKIVASQNQSVKWTTPLGLPVVQPYRKPQRILVRTSLQILALTDSNDTNIM 120
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWT 967
V+RQ+ AFPPNFVHSLD +HMMM A+AC KAGLTFAGVHDSYWT
Sbjct: 121 VRRQKYAFPPNFVHSLDSTHMMMAAIACSKAGLTFAGVHDSYWT 164
>gi|313892513|ref|ZP_07826102.1| DNA-directed RNA polymerase [Dialister microaerophilus UPII 345-E]
gi|313119092|gb|EFR42295.1| DNA-directed RNA polymerase [Dialister microaerophilus UPII 345-E]
Length = 861
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 204/814 (25%), Positives = 360/814 (44%), Gaps = 82/814 (10%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMT-GGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKK 322
Y D D I + ++ L + G H A IG+ I +E +F+
Sbjct: 83 YNDVYAEDHTMCIVLLSMITLSASINGVHADNIFTNIAKYIGNEILKEAHTQEFI----- 137
Query: 323 KNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARA 382
N T KE + + + + ++ L+ + +D + + I K D +
Sbjct: 138 -NHTVEKESDAVKQGKILYSIKKGLKNRKSDYYRAYYTEHLMDIYKF--DKTEFNSKEVI 194
Query: 383 KVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPL 442
+G+++IE+L + D+F + K + + N L
Sbjct: 195 LLGAKLIEILLNSC--------------DLFEIYKPKRMDEIDRLIPTEKFWKIWNTNEL 240
Query: 443 VLKGLERTARHMVIPYMPMLVPPVKWTGYDKGA--------HFFLPS--YVMRTHGAKQQ 492
L + V PM+VPP+ W KG H F+ + + ++
Sbjct: 241 YL-------INKVHANCPMVVPPLPWKNRHKGGYHGELKRFHSFIRTAKFTWKSCKNYYY 293
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE 552
K+ + L VFE ++ + T W++N V+ +L+++ GG LA L P
Sbjct: 294 DKYKKQLDQTNLTRVFEVVNHIQATPWKINKDVMHILEKVIDRGGELAGLPRLQPFEHPP 353
Query: 553 KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRG 612
+ + QL++ + K+ + K R + + A+ + Y+PHN+DFRG
Sbjct: 354 MLKNPTQEQLQEHKKKLHTLYKHEASRSGKAIRTFMNFDTAKTYAKYDKIYFPHNIDFRG 413
Query: 613 RAYPMHPYLNHLGSDLCRGILEFAEGRTLGK-SGLHWLKIHLANLYAGGVDKLSHEGRLA 671
R YP+ P + G+DL +G+L A+ + L K L W I A L G+DK+ E +
Sbjct: 414 RIYPI-PTFSPQGNDLNKGLLLLADPQPLKKEEDLKWFFIAGAEL--AGIDKVPFEECIK 470
Query: 672 FTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS----SSPETFISHIP 727
+ ++H I +A P++ WW + + P+Q L C + + +P F++ +
Sbjct: 471 WVQDHEKQIMATAQDPMKNISWWGELDSPWQFLGFCYEYKKYKKYIEEHKTPIGFMTGLV 530
Query: 728 VHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ---RDP 784
+ DG+C+GLQH++AL RD +GAAAVNL KP D+Y +A V+ ++++AQ +D
Sbjct: 531 IPFDGTCSGLQHFSALLRDEVGAAAVNLKPDTKPHDIYQEVADVVIEEVEKEAQTGTQDA 590
Query: 785 AV------------FPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR--LK 830
V L L + RK+ K+ VMT YG G +Q+ + +
Sbjct: 591 YVKNKKTGKEKLKYGTRTLAQGWLAYGITRKVTKRNVMTLAYGSKQFGFTEQLLQDIIIP 650
Query: 831 ERGAPM-EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTP 889
GA + E F + Y +K A+ ++ A M WL + ++++ + + W TP
Sbjct: 651 NIGAGIFTEDNSFAYAQYMSKHVWQAVRKVVVKAVEGMKWLQDISRLVCDNDHVITWVTP 710
Query: 890 LGLPVVQPYR----KLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMM 945
+G P+ QPY ++ + ++ ++ + T + ++Q +A PNF+HS+D SH+
Sbjct: 711 MGFPIQQPYMVYDIEVYQMRIRNKIKRFYDPKMTGDIDKRKQTSAIAPNFIHSMDASHLQ 770
Query: 946 MTAV-ACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
MT A + +A +HDSY T + D + + +RE FVE+Y ++L F+K
Sbjct: 771 MTVEHAFNDYSIKNYAMIHDSYGTSLGEADNLFKAVREAFVEMYTN---FDVLTLFEKDI 827
Query: 1004 PKLV-------FPPLPERGDFDLREVLGSPYFFN 1030
+ P P +G F +++VL S Y F+
Sbjct: 828 TPNIDPTKIDRLPQQPSKGKFKIKQVLDSLYAFH 861
>gi|84662626|ref|YP_453591.1| putative DNA-directed RNA polymerase [Xanthomonas phage OP1]
gi|84570675|dbj|BAE72738.1| putative DNA-directed RNA polymerase [Xanthomonas oryzae phage OP1]
Length = 774
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 191/621 (30%), Positives = 297/621 (47%), Gaps = 51/621 (8%)
Query: 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHF 477
+ + TV+ +T G S+ + + + K +ER A Y+P + P+ WT Y G
Sbjct: 197 NVVSTVNDDTLGLSEDAHSL-IDDITAKTIERAAY-----YLPCVEQPMPWTSYANGGWH 250
Query: 478 FLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
+ + K + + K L +++L T WRVN R+L+ +++I G
Sbjct: 251 TAEMRRLMPYVIKGKGEYHKALQAADLSQELACINSLQGTAWRVNTRMLAAMEKI---AG 307
Query: 538 RLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMK 597
+++ + + VP + P E E + RK + + + V +VA+K +
Sbjct: 308 KIS-IDEIVAVPDADAPRWEKE-EYRKTKNRYKQVS-----------------NVAKKFE 348
Query: 598 DEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS-GLHWLKIHLANL 656
Y+ + DFRGR Y M +N GSDL + +LEF+ G L + + W I AN
Sbjct: 349 AYPAIYFVYFCDFRGRKYAMGSGINPQGSDLQKCLLEFSTGLPLTDANAVDWFLITGANR 408
Query: 657 YAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
Y G DK S + R+ + ++ +I +A PL G W A P Q LA C EA
Sbjct: 409 Y--GYDKCSLQDRVQWCHDNHGEILAAAQDPLTGLLW-KGASKPLQFLAWCFEY-EAFVE 464
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVII 776
P F+S + DG+CNGLQH++A+ RD +G AA NL+ + P+D+Y+ +A R +
Sbjct: 465 QGP-GFVSRLSADMDGTCNGLQHFSAMLRDDVGGAATNLLPADLPSDIYAIVAKRTQKRL 523
Query: 777 QRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVT-YIGARDQIKRRLKERGAP 835
++ A++D D L K L ++R + K++ MT YG T + A I+ L++ AP
Sbjct: 524 EQ-AEKD----EDGLIDKWLSHGINRSVTKRSTMTLPYGSTRFSSAGFVIEDYLRKGKAP 578
Query: 836 -MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQP-VRWTTPLGLP 893
+ +E A +K A+GE AR M WL AK + P + WTTP G P
Sbjct: 579 EFDPSEHNKAGQLLSKFIWPAIGETVIKAREGMDWLQAAAKQAIKQGAPALSWTTPTGFP 638
Query: 894 VVQPYRKLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
V Q Y ++ V+T + R + K+ PNFVHS+D SH+ T
Sbjct: 639 VWQVYNQIQVKKVRTKMAGAAQIRVYVPGDVADAKKHAAGCAPNFVHSMDASHLTATVTK 698
Query: 951 CRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
C +AG+ F VHDSY H C + R+LR++FV++Y ++L F S V
Sbjct: 699 CAEAGIKDFLMVHDSYGVHCCHAATLARVLRDEFVKMYGA---HDVLAEFATS--NGVDL 753
Query: 1010 PLPERGDFDLREVLGSPYFFN 1030
P P G L +VL S +FF+
Sbjct: 754 PRPAPGSLKLEQVLASDFFFS 774
>gi|397622165|gb|EJK66592.1| hypothetical protein THAOC_12479 [Thalassiosira oceanica]
Length = 229
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 162/229 (70%), Gaps = 8/229 (3%)
Query: 810 MTSVYGVTYIGARDQIKRRLKE----RGAPMEE-AELFGASC-YAAKVTLTALGEMFQAA 863
MTSVYGVT+IGAR+QI+ ++ E RG ++E AE +C Y A +T+ +GE F+ A
Sbjct: 1 MTSVYGVTFIGARNQIEEKINEKLSSRGYDIDEIAEDINVACGYLASLTMEVIGEKFKGA 60
Query: 864 RGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVM 923
R M+WL ECA++I S+ QPV + +P+G+PVVQPYR+ V T LQ +TL +++K+
Sbjct: 61 RQTMTWLAECARLIGSQGQPVSFISPIGVPVVQPYRQKRPFQVITLLQNITLTNDSDKLP 120
Query: 924 VKRQR--TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
+ RQR +AFPPN+VHSLD SHM+MTA+ K GL F+ VHDS+WTH CDV+ +N +LR+
Sbjct: 121 LHRQRQVSAFPPNYVHSLDSSHMLMTAIEMEKRGLHFSAVHDSFWTHPCDVEALNSVLRD 180
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
F+ELY+ P+ E+L S++ +P + FP LP+ GD DL EV +PYFF
Sbjct: 181 TFIELYKEPLLEDLKQSWELRYPYITFPDLPQPGDLDLEEVRSAPYFFQ 229
>gi|260943574|ref|XP_002616085.1| hypothetical protein CLUG_03326 [Clavispora lusitaniae ATCC 42720]
gi|238849734|gb|EEQ39198.1| hypothetical protein CLUG_03326 [Clavispora lusitaniae ATCC 42720]
Length = 995
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 163/477 (34%), Positives = 244/477 (51%), Gaps = 37/477 (7%)
Query: 430 GSKKYGVIECNPLVLKGLERTARHMVIP---YMPMLVPPVKWTGYDKGAHFFLPSYVMRT 486
G K+ GV++ +P + K E T + +PML PP +W + G F V
Sbjct: 462 GYKRVGVVKVHPFLPKQFE-TCLELFSSGSYLLPMLHPPKEWVSPENGG--FFDDLVPLV 518
Query: 487 HGAKQQRDTVKRTPKK---QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG---RLA 540
Q+ + QL+ ++E+L+ LG+ W +N +L V + S G +
Sbjct: 519 KSIDQESTSFYMAQAHRTGQLDSIYESLNALGSVSWAINPSMLGVFNDAMSDKGGFMHIP 578
Query: 541 DLVDRNDVPLPEKPETED--------EAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
+ + + EKP+ D A R + +KK+ +E HS R EL ++
Sbjct: 579 GIKAPDSCEMLEKPQRCDFKAEKDYLSALARHRSTREARLKKK-KEAHSLRVYYELVNTL 637
Query: 593 ARKM-KDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
AR + K+ + +YP N+DFRGR YP +L+H DL R +L F E + LG G WL+
Sbjct: 638 ARSLEKNGDSIFYPQNIDFRGRVYPCVSFLSHHSEDLVRSLLMFWEAKPLGPKGYDWLQY 697
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT 711
LANL++ LS E AF N+ + I +SA P+ + WW K + P+QCLA+C+ L
Sbjct: 698 QLANLHSDHF--LSMEKSKAFVANNKEAIIESAKSPMSPQSWWRKGDSPWQCLAMCMELK 755
Query: 712 EALR-SSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
E ++S IP+H DG+CNGLQHYAALG D A +VNL+ K DVY +
Sbjct: 756 NVWEYEGKKEEYLSRIPIHMDGTCNGLQHYAALGADKDAAVSVNLIPDTKKHDVYVTVLN 815
Query: 771 RV--LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
RV V+ ++ D A A+ +L + RK+VKQTVMT+VYGVT GA QI+ +
Sbjct: 816 RVRERVVSDLESVSDET----AETARQVLPLLSRKIVKQTVMTTVYGVTLYGAFRQIREK 871
Query: 829 LKE---RGAPMEE--AELFGASCYAAKVTLTALGEMFQAARGIMSWLGE-CAKIIAS 879
L E G+ + E + + Y AK L A+ ++F A+ I +WL E C + I++
Sbjct: 872 LDEVFQEGSSVGEYNPQTAKMATYVAKHVLDAISDLFAGAKKIQNWLLENCRRCISA 928
>gi|395750053|ref|XP_003779053.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Pongo abelii]
Length = 1169
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 208/368 (56%), Gaps = 22/368 (5%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A +I +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLIFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
++ P P + P + A+ + + + + +K RE HS R + +LS+A+ ++D F
Sbjct: 736 SEAPQPAEAHLPHSAAPARKAEVRRGLAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-F 794
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 795 WLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPRGLDWLKIHLVNL-TGLKK 853
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + +A+R+S P +
Sbjct: 854 REPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVAKAVRASDPAAY 913
Query: 723 ISHIPVHQ 730
+SH+PVHQ
Sbjct: 914 VSHLPVHQ 921
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 142/265 (53%), Gaps = 21/265 (7%)
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DPA + L + SQ+ R L + V VT G R QI++RL+E +E ++
Sbjct: 909 DPAAYVSHLPVHQV-SQLGRAL--EAVPYRGIWVTRYGGRLQIEKRLRELSDFPQEF-VW 964
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 965 EASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHTGFVVEWVTPLGVPVIQPYRLES 1024
Query: 903 R-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTF 958
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + GLTF
Sbjct: 1025 KVKQIGGGIQSITYTHNGDNSRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTF 1084
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLL-------------DSFQKSFPK 1005
VHD YWTHA DV MN++ R++FV L+ PI ++L DS + S K
Sbjct: 1085 VSVHDCYWTHAADVSVMNQVCRDQFVRLHSEPILQDLSRFLVKRFCSEPQEDSGRGSQLK 1144
Query: 1006 LVFPPLPERGDFDLREVLGSPYFFN 1030
+P+ G FDL V S YFF+
Sbjct: 1145 ETLQAVPKPGAFDLERVKHSTYFFS 1169
>gi|19547987|gb|AAL87357.1| At1g68990/T6L1_17 [Arabidopsis thaliana]
Length = 305
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/320 (46%), Positives = 193/320 (60%), Gaps = 26/320 (8%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHE---VGSGRI 103
MWRN+ L + R FL S S V V RGI + R
Sbjct: 1 MWRNI--------LGRASLRKVKFLSDSSSSGTHYPVNRV------RGILSSVNLSGVRN 46
Query: 104 GEILNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKK 163
G +N + MG ++ + GYAT A+A+ STD E++ S +E+ EL+ EM+K
Sbjct: 47 GLSINPVNEMG--GLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEVNELITEMEK 104
Query: 164 EEQREGENG--SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQ 221
E +R + + +RV GMG+ K+ MLK RQVK+ETE WE+AA E RE+L DMCEQ
Sbjct: 105 ETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQ 164
Query: 222 KLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
KLAPNLPYMKSLFLGWFEP+R+AI + + ++ K K+ YAP+ +QLPAD MAVITMHK+
Sbjct: 165 KLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKM 224
Query: 282 MGLLMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETK---NKEDEEGDES 337
MGLLMT E G ++V AA IG+A+EQEVRI+ FL+K KKN T N E E E
Sbjct: 225 MGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEE 284
Query: 338 NTVTTEQEKLRKKVTDLIKK 357
V E EK RK+VT L++K
Sbjct: 285 -IVAKETEKARKQVTVLMEK 303
>gi|282554612|ref|YP_003347629.1| DNA-dependent RNA polymerase [Klebsiella phage KP34]
gi|262410445|gb|ACY66709.1| DNA-dependent RNA polymerase [Klebsiella phage KP34]
Length = 822
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 188/598 (31%), Positives = 288/598 (48%), Gaps = 48/598 (8%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK--KQLEPVFEALDTLGNT 517
PMLVPPV+ T G + H + R ++ + K + + +AL+ T
Sbjct: 244 PMLVPPVQHTTMWDGGYLTPIDNRGTYHNSHIDRTRLREVAEAFKSADGIKKALNKAQET 303
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE-----------TEDEAQLRKWQ 566
+R+N R+L ++ + G + + R+ VP P KPE TE+E R +
Sbjct: 304 PYRINKRILELVQEARALGIGVG--MPRS-VPEP-KPEWYLDGVPKENYTEEELD-RFGE 358
Query: 567 WKVRNV--KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY---PMHPYL 621
WK R +R+R SQ + L +A + KDE+ Y+P VD+R R Y +HP
Sbjct: 359 WKTRMSLWYSADRKRVSQLRSLLTTLEMAEEFKDEKALYFPTCVDWRYRLYFKSSLHPQ- 417
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
GSDL + +LEF G+ LG GL WLK+H+A + G DK E R A+ + + +I
Sbjct: 418 ---GSDLQKALLEFGRGKPLGDRGLFWLKVHVATCF--GYDKTLFEDRAAWVDANFAEIE 472
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
P + + A+ P+ LA I+L A+RS PE IS IPV D + +G QH +
Sbjct: 473 QLTVSPFDCPAF-TSADSPWCLLAAAIDLVNAVRSGCPEEHISRIPVAMDATNSGGQHLS 531
Query: 742 ALGRDTLGAAAVNLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ 799
AL RD +G NL +K AD+Y + R + D ++ + + ++
Sbjct: 532 ALLRDPVGGRLTNLYWEGNDKKADLYMDVKRRTDEKVILDLDKEDFIIQSTYWRE---NE 588
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAP-MEEAELFGASCYAAKVTLTALGE 858
+ R + K+ MT Y T D I G + L+ SCY A A+ E
Sbjct: 589 ITRSMTKRPSMTYFYSATVRSCSDYIFEGACAEGYEGTDTNSLWNLSCYLAPRMRAAIEE 648
Query: 859 MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL--- 915
AA +M +L A+ + + +Q ++W TPLG V+ Y + R V+ + + L
Sbjct: 649 ANPAAAAVMGYLQNLARRVPA-SQHLQWYTPLGGLVMNRYTQ--REEVRVRIDCMNLSAV 705
Query: 916 ---QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
R+ + ++ + PNFVHSLD +H+MM V C GL +HDS THA DV
Sbjct: 706 LVHNRDFKTCNKRKAASGIAPNFVHSLDSTHLMM--VLCAAEGLDIVPIHDSLATHAADV 763
Query: 973 DEMNRILREKFVELY-EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
D+M+R +RE+FV LY E + ++ + + L +PE G D+R+VL SP+FF
Sbjct: 764 DDMHRHIREQFVRLYEENDLLGDITRAAAAAGADLTDLDMPEVGTLDIRQVLESPFFF 821
>gi|125999968|ref|YP_001039639.1| DNA-dependent RNA polymerase-like protein [Erwinia amylovora phage
Era103]
gi|431810449|ref|YP_007237531.1| DNA-directed RNA polymerase [Erwinia phage phiEa100]
gi|121621824|gb|ABM63398.1| DNA-dependent RNA polymerase-like protein [Enterobacteria phage
Era103]
gi|311875209|emb|CBX44468.1| DNA-directed RNA polymerase [Erwinia phage phiEa1H]
gi|311875330|emb|CBX45071.1| DNA-directed RNA polymerase [Erwinia phage phiEa100]
Length = 885
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 228/853 (26%), Positives = 361/853 (42%), Gaps = 133/853 (15%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKK 323
Y + ++ + ITM + +L +G + A I IE + R K LE +K
Sbjct: 78 YLQCVGNEVASYITMKVALDMLASGVSY-----TAIAMTIATRIEDQARFTK-LEGAAEK 131
Query: 324 -------NETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPW 376
N +N + N + + KL + + + P+V R + W
Sbjct: 132 YVAKVLDNLKRNSSKQYQHGHNVMVAAERKLSEG-----RPGQEPSVTRWI-------AW 179
Query: 377 GQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKY-- 434
QD +G +++++ ++ + + P F R + GG K
Sbjct: 180 PQDDLLAIGMTLLQIMEKSVFFEGE------------PVF---FRYNKNDNGGGKVKLIP 224
Query: 435 --GVIECNPLVLKGLERTARHMVIPYMPMLVPPVKW-TGYDKGAHFFLPSYVMRTHGAKQ 491
GV + ++ + M Y P +VPP W T ++ G H + R K
Sbjct: 225 VLGVADNVNAWIEAFKEHVSVMSPAYGPCVVPPRDWKTPFNGGFH--TEAVASRVRFVKG 282
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL-----ADLVDRN 546
+ D V++ +KQ+ V++A++ L + KW +N L I + L A ++ R+
Sbjct: 283 RTDHVRKLTQKQMPKVYKAINFLQSVKWSINTDTLETAQEILAKNLGLGMPSFAPIITRD 342
Query: 547 D---VPLPEKPETEDEAQLRK------------WQWKVRNVKKENRERHSQRCDIELKLS 591
+ PLP + + +LR+ W+ + +R S+ + L+
Sbjct: 343 NKPACPLPLEFQHLRGEELRQSLTPTQWDSFLAWKGDCSKLYTMETKRTSKASAVARMLN 402
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS-GLHWLK 650
A + E Y+ + +D RGR Y ++ DL + +L +G+TL S LHW
Sbjct: 403 QASDLAKFESIYFVYAMDSRGRVYVQSSGVSPQSDDLGKSLLRSTKGKTLDSSEALHWFL 462
Query: 651 IHLANLYAGGVDKLSHEGRLA--FTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC- 707
+ NL+ G DK + R++ E+ D + D A PL R W L A++P+Q LA
Sbjct: 463 VLGGNLW--GWDKKPFDVRVSHVLDEDFADMVRDVATDPLTFRNW-LSADEPWQFLAWAK 519
Query: 708 --INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
+A+ + F++++PVHQDGSC+G+QHY+A+ RD GA AVNL+ + P D+Y
Sbjct: 520 EYARYLDAVDDGTSAEFVTYLPVHQDGSCSGIQHYSAMLRDKTGAKAVNLMPSDTPQDIY 579
Query: 766 SGIAARVL-----VIIQRDAQRD---------PAVFPDALRAKLLLSQVDRKLVKQTVMT 811
+A V+ + D++++ A+ + R L K+ VMT
Sbjct: 580 GEVAKVVIRKNKAIADMADSEQEGYSIGKMKLSVAVSKAMAESWDAIGITRSLTKKPVMT 639
Query: 812 SVYGVTYIGARDQIKRRL---------------KERGA--PMEEAELFGASC-----YAA 849
YG T I R+ I L +ER A P E EL G S Y
Sbjct: 640 LPYGSTRITCRESIDDYLVSLEEDELRKAKAEGRERNAVHPFESEELEGLSYKNALNYMT 699
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS 909
+ ++ E+ +A M + + A+ + N+ + WTTP G V Q V +
Sbjct: 700 SLVWPSISEVVRAPVVAMKAIRQLARAVTKLNEGLYWTTPTGFIVEQRIYATDNLRVSSY 759
Query: 910 LQ---ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGV-HDSY 965
L ++L ETE + A PNFVHSLD +H++ A AGL F V HDS+
Sbjct: 760 LMGRVRMSLTVETETIDEAAMMGAAAPNFVHSLDAAHLISAVCAMADAGLEFVAVIHDSF 819
Query: 966 WTHACDVDEMNRILREKFVELY------EMPIFEN---LLDSFQKSFPKLVFPPLPERGD 1016
T ACD + LR + V Y EM + EN LL F S LPE GD
Sbjct: 820 GTLACDTQVLRDSLRSEMVAQYADVNRLEMLVQENEGRLLQDFGIS--------LPEMGD 871
Query: 1017 FDLREVLGSPYFF 1029
FDL E+L S Y F
Sbjct: 872 FDLTEILKSDYCF 884
>gi|89148148|gb|ABD62817.1| mitochondrial single-subunit RNA polymerase [Rosculus sp. ATCC 50888]
Length = 1285
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 138/196 (70%), Gaps = 2/196 (1%)
Query: 837 EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
+EA + +S Y A++TLT+LG +F AA IMSWL ECA II+ + QPV W TP+ LPVVQ
Sbjct: 1090 QEAAMRASSIYLARLTLTSLGTVFSAATRIMSWLTECAGIISKQEQPVSWITPMQLPVVQ 1149
Query: 897 PYRKLGRHTVKTSLQILTLQRETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
YR + + VKT Q +TL + + + V +RQR AFPPNFVHSLD +HMM+TA C
Sbjct: 1150 HYRMISKFQVKTLNQTVTLHHDNDTLPVSPQRQRAAFPPNFVHSLDATHMMLTATQCAHH 1209
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPER 1014
G+ F+ VHDSYWTH DVD+MN +LR++F+ LY P+ E+L +SF +P FPPLPER
Sbjct: 1210 GIVFSSVHDSYWTHPGDVDKMNALLRDRFIHLYSGPVLEDLRESFVLRYPTAEFPPLPER 1269
Query: 1015 GDFDLREVLGSPYFFN 1030
G+ DL EV SPYFFN
Sbjct: 1270 GNLDLEEVRKSPYFFN 1285
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 164/322 (50%), Gaps = 59/322 (18%)
Query: 414 PAFTHALRTVSKETKGGSKKYGVIECNP---LVLKGLERTARHMVIPYMPMLVPPVKWTG 470
PAFT+ R+V G+ G I C+ VL + + +PM++PP W
Sbjct: 420 PAFTYEHRSV------GNHYVGYITCHHDVRNVLNSAHTDVSTLAVRLLPMVIPPRPWRS 473
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
G + +PS ++R+ G+++Q D V + K ++ E+L+ LG W +NN VLSV+D
Sbjct: 474 VRDGGYLSVPSSIIRSKGSRKQIDAVVASDIKTVQ---ESLNYLGRVAWSINNHVLSVID 530
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETE----DEAQLRKWQWKVRNVK------------- 573
+ W GG LA + R D+PLP++P DE + R + +K
Sbjct: 531 QAWDEGGGLASMPTRRDIPLPQQPVLNLLQYDEKKNRYFAPSAATIKAMTKNEGDVDTSD 590
Query: 574 ---------------------------KENRERHSQRCDIELKLSVARKMKDEEGFYYPH 606
+ N + HS RCD+ L+L+ A+++ Y+P
Sbjct: 591 GQLSTSDQLVQQTQQWRQYQRDMQRISQHNADLHSLRCDLSLRLNQAKQLTGNP-VYFPL 649
Query: 607 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSH 666
N+DFRGRAYP+ P+LNHLGSDL R +L F + LG+ GL+WL+ HLA + GVDK+S
Sbjct: 650 NMDFRGRAYPIPPHLNHLGSDLARALLLFHHKKPLGEKGLYWLQAHLAAQF--GVDKVSF 707
Query: 667 EGRLAFTENHLDDIFDSADKPL 688
+ R+ + E H+ + D+A +P+
Sbjct: 708 DDRVKYIEQHMHLVRDTAKRPM 729
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 108/161 (67%), Gaps = 13/161 (8%)
Query: 687 PLEGRR-------WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQH 739
PL+G R WW A++P+Q L+ C + A+ S +P T+ + +PVHQDGSCNGLQH
Sbjct: 809 PLDGERDVRAKLPWWQLADNPWQALSTCHEIINAIDSGNPATYETGLPVHQDGSCNGLQH 868
Query: 740 YAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ 799
YAALGRD G + VNL +KP DVYS VL ++R ++D + L AK+LL
Sbjct: 869 YAALGRDYQGGSRVNLTKSDKPQDVYS----HVLNEVKRRMEQDIKETNNPL-AKMLLPH 923
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-RGAPMEEA 839
+ RK+VKQTVMTSVYGVT+IGARDQI ++L++ + P EEA
Sbjct: 924 MARKVVKQTVMTSVYGVTFIGARDQILKQLRDLKDVPWEEA 964
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 194 MRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253
+ Q+ +E + KA +EY EL M + A +L ++ L WF+PL ++I KE CR
Sbjct: 107 VEQLNLEHTSITKAVDEYTELTEQMTKMGRASHLSPLQDHVLRWFKPLAESIEKEILDCR 166
>gi|207345728|gb|EDZ72452.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 236
Score = 235 bits (600), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/247 (50%), Positives = 162/247 (65%), Gaps = 14/247 (5%)
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
NHLG+D+ RG+L F G+ LG SGL WLKIHL+NL+ G DKL + R+AFTE+HL DI
Sbjct: 1 NHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIK 58
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
DSA+ PL G RWW A+ P+Q LA C L E ++ +PE FISH PVHQDG+CNGLQHYA
Sbjct: 59 DSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYA 118
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVD 801
ALG D GA VNLV +KP DVY+ +A V ++ A++ AK+L ++
Sbjct: 119 ALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKGDE------NAKILKDKIT 172
Query: 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM--EEAELFGASCYAAKVTLTALGEM 859
RK+VKQTVMT+VYGVTY+GA QI ++L +P+ + E S Y K +A+ E+
Sbjct: 173 RKVVKQTVMTNVYGVTYVGATFQIAKQL----SPIFDDRKESLDFSKYLTKHVFSAIREL 228
Query: 860 FQAARGI 866
F +A I
Sbjct: 229 FHSAHLI 235
>gi|418488977|ref|YP_007002889.1| putative DNA-dependent RNA polymerase [Pantoea phage LIMElight]
gi|308071873|emb|CBW54794.1| putative DNA-dependent RNA polymerase [Pantoea phage LIMElight]
Length = 818
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 183/600 (30%), Positives = 283/600 (47%), Gaps = 41/600 (6%)
Query: 454 MVIPYMPMLVPPVKWTGYDKGAHFF----LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFE 509
M+ P PM+VPP T G + +Y R KQ+RD K+ + +P+
Sbjct: 235 MIAP--PMIVPPQDHTTIHDGGYMTDIDRRGTYKNRHITNKQRRDVAKQFASDEAQPLRA 292
Query: 510 ALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE-----KPETEDEAQ--- 561
A++ N +RVN VL + + G + + P PE P+ + +A+
Sbjct: 293 AMNKAQNVPYRVNRSVLGWVQAARAQGIGIG-MPSTKGRPKPEWRLDGIPKEQYDARELE 351
Query: 562 -LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPY 620
+W+ R E R+R SQ + + + + + KDE+ Y+P VD+R R Y
Sbjct: 352 DFEEWKAVTRQWYTEERKRVSQLRGMAMTIDMCEEYKDEQVLYFPTCVDWRYRLY-FKSA 410
Query: 621 LNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDI 680
LN GSDL + +LEF GR LG GLHWLK+++A + G DK E R A+ + H +I
Sbjct: 411 LNPQGSDLQKALLEFGTGRPLGDRGLHWLKVNVATTF--GYDKPLFEERAAWVDLHYAEI 468
Query: 681 FDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHY 740
AD P E + A+ P+ LA CI L A+RS P ++SH PV D + +G QH+
Sbjct: 469 ERVADAPFETDSF-KNADSPWCFLAACIELVNAVRSGCPAEYVSHAPVAMDATNSGGQHF 527
Query: 741 AALGRDTLGAAAVNLV--AREKPADVYSGIAARV---LVIIQRDAQRDPAVFPDALRAKL 795
+A+ RD +G NL + AD+Y + R +++ QR+A D V R
Sbjct: 528 SAMLRDEIGGRLTNLFWNGNTEKADLYMNVKERTDSKVIVAQRNA--DTVVQATYWRE-- 583
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR-RLKERGAPMEEAELFGASCYAAKVTLT 854
+++ R + K+ MT Y T D I L E P+++ + S + A +
Sbjct: 584 --NEITRSMTKRPAMTFFYSATVRSCSDYIMLGALDEGYQPLQDFSMMKLSGFLAPLMRE 641
Query: 855 ALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS----L 910
++ E AA M + + + I EN ++W TPLG ++ Y V
Sbjct: 642 SIEEAMPAAAKAMKFAQQVCRTIPLENH-LQWNTPLGGLIINRYTTTEEKRVNIRSMGLT 700
Query: 911 QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHAC 970
Q++ R + ++ + PNFVH D +H+MM V R +G +HDS THAC
Sbjct: 701 QVVAYNRNYDLNNRRKAASGIAPNFVHGQDSTHLMM--VILRHSGY-IVPIHDSVATHAC 757
Query: 971 DVDEMNRILREKFVELY-EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
DVDEM++ LRE F +LY + L ++ + + +PE G +L V SP+FF
Sbjct: 758 DVDEMHKHLREAFCDLYTSTDPLQTLKEAAEAAGGDCSEIDMPEHGTLNLELVKDSPFFF 817
>gi|31711650|ref|NP_853568.1| DNA-directed RNA polymerase [Enterobacteria phage SP6]
gi|31505654|gb|AAP48747.1| gp8 [Enterobacteria phage SP6]
gi|40787026|gb|AAR90000.1| 7 [Enterobacteria phage SP6]
Length = 874
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 223/873 (25%), Positives = 375/873 (42%), Gaps = 134/873 (15%)
Query: 240 PLRDAIAKEQERCRMAKHKVAYAPYFDQ-LPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298
P+ + I +E K + A F Q + ++ A ITM +M +L T A +
Sbjct: 52 PMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDMLNTD-----ATLQA 106
Query: 299 AACIIGDAIEQEVRIHK-------FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKV 351
A + + IE +VR K + EK KK + + N ++ + +K
Sbjct: 107 IAMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLKASRTKSYR-HAHNVAVVAEKSVAEKD 165
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
D D ++ W ++ + ++G+ ++E+L + +
Sbjct: 166 ADF----------------DRWEAWPKETQLQIGTTLLEILEGSVFYNGE---------- 199
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKW 468
P F A+RT G K ++ + V + + H+ Y P ++PP W
Sbjct: 200 --PVFMRAMRTY------GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPW 251
Query: 469 -TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLS 527
T ++ G H R K R+ V++ +KQ+ V++A++ L NT+W++N VL+
Sbjct: 252 RTPFNGGFH--TEKVASRIRLVKGNREHVRKLTQKQMPKVYKAINALQNTQWQINKDVLA 309
Query: 528 VLDRIWSCG-----GRLADLVDRNDVP---------------LPEKPETEDEAQLRKWQW 567
V++ + L+D+ + P L E E Q W+
Sbjct: 310 VIEEVIRLDLGYGVPSFKPLIDKENKPANPVPVEFQHLRGRELKEMLSPEQWQQFINWKG 369
Query: 568 KVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSD 627
+ + +R S+ + + ARK E Y+ + +D R R Y L+ +D
Sbjct: 370 ECARLYTAETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSND 429
Query: 628 LCRGILEFAEGRTL-GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF----- 681
L + +L F EGR + G L W I+ ANL+ G DK + + R++ N LD+ F
Sbjct: 430 LGKALLRFTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVS---NVLDEEFQDMCR 484
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR---SSSPETFISHIPVHQDGSCNGLQ 738
D A PL +W KA+ P++ LA C + L + F +H+PVHQDGSC+G+Q
Sbjct: 485 DIAADPLTFTQW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQ 543
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA----QRDPAVFPD----- 789
HY+A+ RD +GA AVNL + P D+Y +A V+I+++A D F
Sbjct: 544 HYSAMLRDEVGAKAVNLKPSDAPQDIYGAVAQ---VVIKKNALYMDADDATTFTSGSVTL 600
Query: 790 ------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI-----------------K 826
A+ + + R L K+ VMT YG T + R+ + +
Sbjct: 601 SGTELRAMASAWDSIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAE 660
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTAL-----GEMFQAARGIMSWLGECAKIIASEN 881
R + P E+ + AA +TAL E+ +A M + + A+ A N
Sbjct: 661 GRTANKVHPFEDDRQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRN 720
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRETEKVMVKRQRTAFPPNFVHS 938
+ + +T P G + Q V+T L ++LQ ET+ V A PNFVH
Sbjct: 721 EGLMYTLPTGFILEQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHG 780
Query: 939 LDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLL 996
D SH+++T G+T A +HDS+ THA + + L+ + V +Y + + LL
Sbjct: 781 HDASHLILTVCELVDKGVTSIAVIHDSFGTHADNTLTLRVALKGQMVAMYIDGNALQKLL 840
Query: 997 DSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ ++ + +PE+G+FDL E++ S Y F
Sbjct: 841 EEHEERWMVDTGIEVPEQGEFDLNEIMDSEYVF 873
>gi|456351031|ref|YP_007500985.1| RNA polymerase [Enterobacteria phage UAB_Phi78]
gi|322227505|gb|ADW95214.1| RNA polymerase [Enterobacteria phage UAB_Phi78]
Length = 874
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 227/874 (25%), Positives = 375/874 (42%), Gaps = 136/874 (15%)
Query: 240 PLRDAIAKEQERCRMAKHKVAYAPYFDQ-LPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298
P+ + I +E K + A F Q + ++ A ITM +M +L T +Q
Sbjct: 52 PMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDMLNTD------VTLQ 105
Query: 299 A-ACIIGDAIEQEVRIHK-------FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK 350
A A + + IE +VR K + EK KK + + + V E+ + +K
Sbjct: 106 AIAMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLKASRTKSYRHAHNVAVVAEK-SVAEK 164
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
D D ++ W ++A+ ++G+ ++E+L + +
Sbjct: 165 DADF----------------DRWEAWPKEAQLQIGTTLLEILEGSVFYNGE--------- 199
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVK 467
P F A+RT G K ++ + V + + H+ Y P +VPP
Sbjct: 200 ---PVFMRAMRTY------GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVVPPRP 250
Query: 468 W-TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526
W T ++ G H R K R+ V++ +KQ+ V++A++ L NT+W++N VL
Sbjct: 251 WKTPFNGGFH--TEKVASRIRLVKGNREHVRKLTQKQMPKVYKAINALQNTQWQINKDVL 308
Query: 527 SVLDRIWSCG-----GRLADLVDRNDVP---------------LPEKPETEDEAQLRKWQ 566
+V++ + L+D+ + P L E E Q W+
Sbjct: 309 AVIEEVIRLDLGYGVPSFKPLIDKENKPANPVPVEFQHLRGRELKEMLSPEQWQQFINWK 368
Query: 567 WKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGS 626
+ + +R S+ + + ARK E Y+ + +D R R Y L+ +
Sbjct: 369 GECARLYTAETKRGSKSAAVVRMVGQARKYSTFESIYFVYAMDSRSRVYAQSSTLSPQSN 428
Query: 627 DLCRGILEFAEGRTLGK-SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF---- 681
DL + +L F EGR + L W ++ ANL+ G DK + R++ N LD+ F
Sbjct: 429 DLGKALLRFTEGRPVDSVEALKWFCVNGANLW--GWDKKIFDVRVS---NVLDEEFQDMC 483
Query: 682 -DSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL---RSSSPETFISHIPVHQDGSCNGL 737
D A PL +W KA+ P++ LA C + L + F +H+PVHQDGSC+G+
Sbjct: 484 RDIAADPLTFTQW-AKADAPYEFLAWCFEYAQYLDLVEEGRADEFRTHLPVHQDGSCSGI 542
Query: 738 QHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA----QRDPAVFPD---- 789
QHY+A+ RD +GA AVNL + P D+Y +A V+I+++A D F
Sbjct: 543 QHYSAMLRDEVGAKAVNLKPSDTPQDIYGAVAQ---VVIKKNALYMDADDATTFTSGSVT 599
Query: 790 -------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI----------------- 825
A+ + + R L K+ VMT YG T + R+ +
Sbjct: 600 LSGAELRAMASAWDSIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVA 659
Query: 826 KRRLKERGAPMEEAELFGASCYAAKVTLTAL-----GEMFQAARGIMSWLGECAKIIASE 880
+ R + P E+ + AA +TAL E+ +A M + + A+ A
Sbjct: 660 EGRTANKVHPFEDDRQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKR 719
Query: 881 NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRETEKVMVKRQRTAFPPNFVH 937
N+ + +T P G + Q V+T L ++LQ ET+ V A PNFVH
Sbjct: 720 NEGLMYTLPTGFILEQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVH 779
Query: 938 SLDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENL 995
D SH+++T G+T A +HDS+ THA + + L+ + V +Y E + L
Sbjct: 780 GHDASHLILTVCELVDKGVTSIAVIHDSFGTHADNTLTLRVALKGQMVAMYSEGHALQKL 839
Query: 996 LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
LD + + +PE+G+FDL E++ S Y F
Sbjct: 840 LDEHEDRWMVDTGIEVPEQGEFDLNEIMESEYVF 873
>gi|423262052|ref|YP_007010652.1| putative DNA-directed RNA polymerase [Pectobacterium phage PP1]
gi|399220984|gb|AFP33672.1| putative DNA-directed RNA polymerase [Pectobacterium phage PP1]
Length = 859
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 229/869 (26%), Positives = 374/869 (43%), Gaps = 127/869 (14%)
Query: 240 PLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMA-VITMHKLMGLLMTGGEHGRARVVQ 298
P+ + I +E K K A F Q + +A ITM +M +L T +
Sbjct: 38 PMAEGIQTYKEHYTGRKGKPVRALAFLQCVENEVAGYITMKVVMDMLNTD-----VTLQA 92
Query: 299 AACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQ 358
A I + IE +VR K LE K K K + S ++ R ++ +
Sbjct: 93 VAMTIAERIEDQVRFSK-LEGVAAKYFEKVKASLQASRS-------KQYRHGHRVMVSAE 144
Query: 359 KLPAVRRIVKGQD--DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAF 416
K R G+D ++ W ++ ++G ++++L + + + P F
Sbjct: 145 KSLTER----GEDVERWEAWPKEVCLQIGMTLLDILETSVFFEGE------------PVF 188
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH---MVIPYMPMLVPPVKWTGYDK 473
A+R + G + ++ + V + H + Y P ++PP W
Sbjct: 189 FRAIR------QNGVRSTYYLQTSETVGNWISEFREHVSQLAPAYAPCVIPPRPWKSPFN 242
Query: 474 GAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIW 533
G F R K +R+ V+R KQ+ V++A++ L T+W+VN VL+V D +
Sbjct: 243 GG-FHSEKVASRVRLVKGKREHVRRLTPKQMPNVYKAINALQETQWQVNTDVLAVADDVV 301
Query: 534 SCG-----GRLADLVDRNDVP---------------LPEKPETEDEAQLRKWQWKVRNVK 573
+ L+DR++ P L E + + W+ + +
Sbjct: 302 RLNLGYGMPSFSPLIDRDNKPNNPVPVEFQHLRGRELKEMLNDDQWSTFIAWKGECARLY 361
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
+R S+ + + ARK + ++ + +D R R Y L+ +DL + +L
Sbjct: 362 TAETKRGSKSAAVVRMIGQARKYSKFDAIHFVYAMDSRSRVYAQSSTLSPQSNDLGKALL 421
Query: 634 EFAEGRTLGK-SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF-----DSADKP 687
+FAEGR++ L W + ANL+ G DK + R++ N LDD F D A P
Sbjct: 422 KFAEGRSIATVEDLRWFCVCGANLW--GWDKKIFDTRVS---NVLDDDFKEMCRDIAADP 476
Query: 688 LEGRRWWLKAEDPFQCLAVCINLTEAL------RSSSPETFISHIPVHQDGSCNGLQHYA 741
L +W A++P+Q LA I L RSS F++H+PVHQDGSC+G+QHY+
Sbjct: 477 LTFTQW-AGADEPYQFLAWAIEYASYLDHVEDGRSSE---FLTHLPVHQDGSCSGIQHYS 532
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA----QRDPAVFPDA---LRAK 794
A+ RD +GAAAVNL +P D+Y +A V+I+++ R+ VF L+
Sbjct: 533 AMLRDKVGAAAVNLSPSNEPQDIYGRVAQ---VVIEKNTANMDAREEDVFTSGSLTLQGS 589
Query: 795 LLLSQ--------VDRKLVKQTVMTSVYGVTYIGARDQI-----------KRRLKERGAP 835
+L + + R L K+ VMT YG T + RD + ++ G
Sbjct: 590 VLRAMASAWDCIGITRNLTKKPVMTLPYGSTRLTCRDAVADYLVGLEESEAKKAAAEGRG 649
Query: 836 MEEAELFG----------ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR 885
+ FG A Y + ++ E+ +A M + + A+ A N+ +
Sbjct: 650 INAVHPFGNDEGQTREGSALNYMTALIWPSISEVVKAPVVAMKMIRQLARYAARRNEGLE 709
Query: 886 WTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRETEKVMVKRQRTAFPPNFVHSLDGS 942
T P G + Q VKT L ++LQ ET+ V A PNFVH D S
Sbjct: 710 VTLPTGFILQQKIMATQALVVKTQLMGRIEMSLQVETDIVDEAAMMGAAAPNFVHGHDAS 769
Query: 943 HMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLLDSFQ 1000
H++ T A AG+ + A +HDS+ THA + L+ +FV +Y + + L+ +
Sbjct: 770 HLINTVCALVDAGVKSIAVIHDSFGTHAPKTAVLRHALKSEFVAMYADTNVLAALVAEQE 829
Query: 1001 KSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ +PE+GDFD+REV+ S Y F
Sbjct: 830 DRWSVDTGIEVPEQGDFDVREVMNSEYCF 858
>gi|422936620|ref|YP_007006595.1| RNA polymerase [Escherichia phage phiKT]
gi|374713664|gb|AEZ65095.1| RNA polymerase [Escherichia phage phiKT]
Length = 823
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 184/645 (28%), Positives = 298/645 (46%), Gaps = 50/645 (7%)
Query: 422 TVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVP----PVKWTGYDKGAHF 477
T ++ ++G +K Y +E + L +E T R +V + P +P P+ WTG G +
Sbjct: 191 THTEVSRGKAKMY--VELSDEALGMIEDTKR-LVSFFRPQRLPFVEKPLDWTGIVGGGYH 247
Query: 478 F--LPSYVMRTHGAK-QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+ S + R A Q D + + V ++TL + +WR+N R+L V +++
Sbjct: 248 TARMQSTMPRCIKASPTQMDVLIKHRDDYKGTVVACINTLQSVEWRINKRILEVQQQMF- 306
Query: 535 CGGRLADLVDRNDVPLPEKPETEDEAQLRK-----WQWKVRNVKKENRERHSQRCDIELK 589
R + ++ D + ED + K W+ ++ E R
Sbjct: 307 ---RGFEPKNKPDALECHSKDVEDWTEADKSLHSHWKKEMARWYTEQRAERYAASRHAYT 363
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
LSVAR+ D ++ + D+RGR YP ++ G+D+ + +LEFA G+ +
Sbjct: 364 LSVAREFADYPRIWFMYFADWRGRYYPATTGISPQGTDISKSMLEFANGKPISDPIAEQF 423
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDP---FQCLAV 706
L + G DK S R+ + + + I AD+PL +W + D +Q LA
Sbjct: 424 FFLLGST-KFGFDKGSISERVQWVHENHELIMACADEPLLHTDFWYREADKKTRYQFLAW 482
Query: 707 CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766
C E R P F+S +PV DG+CNGLQHY+A+ RD++GA A NL+ +P D+Y+
Sbjct: 483 CFEYAEYKRF--PAGFVSRLPVSLDGTCNGLQHYSAMLRDSVGAKATNLLPANRPNDIYA 540
Query: 767 GIAARVLVIIQRDAQRDPAVFP--------------DALRAKLLLSQVDRKLVKQTVMTS 812
+A V +++ PA FP D R L + R LVK+ VMT
Sbjct: 541 QVAGVVTNLLE---SMSPADFPALTRESKPLSIYEVDFFRRGWLHHGISRSLVKRCVMTL 597
Query: 813 VYGVTYIGARDQIK--RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
YG IK L + + A+ + + A+G + + A G MS+
Sbjct: 598 PYGSKKFSMGRFIKGDYMLDIHPEEFDTDDYTDAANFLGDIVWKAIGMVVEKAVGGMSYF 657
Query: 871 GECAKIIASEN--QPVRWTTPLGLPVVQPYRK---LGRHTVKTSLQILTLQRETEKVMVK 925
++ I + + ++W + GLP+VQ Y K + +V+ L ET+K+
Sbjct: 658 QGTSRAITRKKDVEVIQWPSMTGLPIVQDYWKTEYVQFRSVRGGGARLKCLVETDKIDKL 717
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFV 984
PN VHSLD +H+ +A KAG+ +FA +HD Y THA D + +++RE+FV
Sbjct: 718 GHANGIAPNIVHSLDAAHLTFVTLAAAKAGIDSFAMIHDDYGTHAADTALLFKLIREEFV 777
Query: 985 ELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
++YE F + ++ + P PE GD DL++V S YFF
Sbjct: 778 KMYEQDPFTMIAEALEAQAISKYVPARPEFGDLDLQQVNHSEYFF 822
>gi|133451|sp|P06221.1|RPOL_BPSP6 RecName: Full=DNA-directed RNA polymerase
gi|15463|emb|CAA68288.1| unnamed protein product [Shigella phage Sf6]
Length = 874
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 223/873 (25%), Positives = 374/873 (42%), Gaps = 134/873 (15%)
Query: 240 PLRDAIAKEQERCRMAKHKVAYAPYFDQ-LPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298
P+ + I +E K + A F Q + ++ A ITM +M +L T A +
Sbjct: 52 PMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDMLNTD-----ATLQA 106
Query: 299 AACIIGDAIEQEVRIHK-------FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKV 351
A + + IE +VR K + EK KK + + N ++ + +K
Sbjct: 107 IAMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLKASRTKSYR-HAHNVAVVAEKSVAEKD 165
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
D D ++ W ++ + ++G+ ++E+L + +
Sbjct: 166 ADF----------------DRWEAWPKETQLQIGTTLLEILEGSVFYNGE---------- 199
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKW 468
P F A+RT G K ++ + V + + H+ Y P ++PP W
Sbjct: 200 --PVFMRAMRTY------GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPW 251
Query: 469 -TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLS 527
T ++ G H R K R+ V++ +KQ+ V++A++ L NT+W++N VL+
Sbjct: 252 RTPFNGGFH--TEKVASRIRLVKGNREHVRKLTQKQMPKVYKAINALQNTQWQINKDVLA 309
Query: 528 VLDRIWSCG-----GRLADLVDRNDVP---------------LPEKPETEDEAQLRKWQW 567
V++ + L+D+ + P L E E Q W+
Sbjct: 310 VIEEVIRLDLGYGVPSFKPLIDKENKPANPVPVEFQHLRGRELKEMLSPEQWQQFINWKG 369
Query: 568 KVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSD 627
+ + +R S+ + + ARK E Y+ + +D R R Y L+ +D
Sbjct: 370 ECARLYTAETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSND 429
Query: 628 LCRGILEFAEGRTL-GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF----- 681
L + +L F EGR + G L W I+ ANL+ G DK + + R++ N LD+ F
Sbjct: 430 LGKALLRFTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVS---NVLDEEFQDMCR 484
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR---SSSPETFISHIPVHQDGSCNGLQ 738
D A PL +W KA+ P++ LA C + L + F +H+PVHQDGSC+G+Q
Sbjct: 485 DIAADPLTFTQW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQ 543
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA----QRDPAVFPD----- 789
HY+A+ RD +GA AVNL + P D+Y +A V+I+++A D F
Sbjct: 544 HYSAMLRDEVGAKAVNLKPSDAPQDIYGAVAQ---VVIKKNALYMDADDATTFTSGSVTL 600
Query: 790 ------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI-----------------K 826
A+ + + R L K+ VMT YG T + R+ + +
Sbjct: 601 SGTELRAMASAWDSIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAE 660
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTAL-----GEMFQAARGIMSWLGECAKIIASEN 881
R + P E+ + AA +TAL E+ +A M + + A+ A N
Sbjct: 661 GRTANKVHPFEDDRQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRN 720
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRETEKVMVKRQRTAFPPNFVHS 938
+ + +T P G + Q V+T L ++LQ ET+ V A PNFVH
Sbjct: 721 EGLMYTLPTGFILEQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHG 780
Query: 939 LDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLL 996
D SH+++T G+T A +HDS+ THA + + L+ + V +Y + + LL
Sbjct: 781 HDASHLILTVCELVDKGVTSIAVIHDSFGTHADNTLTLRVALKGQMVAMYIDGNALQKLL 840
Query: 997 DSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ + + +PE+G+FDL E++ S Y F
Sbjct: 841 EEHEVRWMVDTGIEVPEQGEFDLNEIMDSEYVF 873
>gi|83571724|ref|YP_424976.1| putative RNA polymerase [Enterobacteria phage K1E]
gi|83308175|emb|CAJ29407.1| gp7 protein [Enterobacteria phage K1E]
Length = 875
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 223/841 (26%), Positives = 358/841 (42%), Gaps = 132/841 (15%)
Query: 271 DMMAVITMHKLMGLLMTGGEHGRARVVQAACI-IGDAIEQEVRIHK-------FLEKTKK 322
++ A ITM +M +L T +QA + + D IE +VR K + EK KK
Sbjct: 84 EVAAYITMKIVMDMLNTD------VTLQAIAMNVADRIEDQVRFSKLEGHAAKYFEKVKK 137
Query: 323 KNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARA 382
+ +K N ++ + + D + ++ W +D
Sbjct: 138 SLKA-SKTKSYRHAHNVAVVAEKSVADRDADFSR----------------WEAWPKDTLL 180
Query: 383 KVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPL 442
++G ++E+L + + P F LRT GG ++ +
Sbjct: 181 QIGMTLLEILENSVFFNGQ------------PVFLRTLRT-----NGGKHGVYYLQTSEH 223
Query: 443 V---LKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRT 499
V + + + Y P ++PP W G F R K R+ V++
Sbjct: 224 VGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNGG-FHTEKVASRIRLVKGNREHVRKL 282
Query: 500 PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG-----GRLADLVDRNDVPLPEKP 554
KKQ+ V++A++ L TKW+VN VL V++ + L+DR + P P
Sbjct: 283 TKKQMPAVYKAVNALQATKWQVNKEVLQVVEDVIRLDLGYGVPSFKPLIDRENKPANPVP 342
Query: 555 ---------ETEDEAQLRKWQ----WKVRNVKKENRE--RHSQRCDIELKLSVARKMKDE 599
E ++ +WQ WK K E R S+ + ARK
Sbjct: 343 LEFQHLRGRELKEMLTPEQWQAFINWKGECTKLYTAETKRGSKSAATVRMVGQARKYSQF 402
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS-GLHWLKIHLANLYA 658
+ Y+ + +D R R Y L+ +DL + +L F EG+ L + L W ++ AN +
Sbjct: 403 DAIYFVYALDSRSRVYAQSSTLSPQSNDLGKALLRFTEGQRLDSAEALKWFLVNGANNW- 461
Query: 659 GGVDKLSHEGRLAFTENHLDDIF-----DSADKPLEGRRWWLKAEDPFQCLAVCINLT-- 711
G DK + + R T N LD F D A PL +W + A+ P+ LA C
Sbjct: 462 -GWDKKTFDVR---TANVLDSEFQDMCRDIAADPLTFTQW-VNADSPYGFLAWCFEYARY 516
Query: 712 -EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
+AL + + F++H+PVHQDGSC+G+QHY+A+ RD +GA AVNL + P D+Y +A
Sbjct: 517 LDALDEGTQDQFMTHLPVHQDGSCSGIQHYSAMLRDAVGAKAVNLKPSDSPQDIYGAVAQ 576
Query: 771 RVLVIIQRD----AQRDPAVFPD-----------ALRAKLLLSQVDRKLVKQTVMTSVYG 815
V+IQ++ D F ++ + + + R L K+ VMT YG
Sbjct: 577 ---VVIQKNYAYMNAEDAETFTSGSVTLTGAELRSMASAWDMIGITRGLTKKPVMTLPYG 633
Query: 816 VTYIGARDQI------------KRRLKE-RGA----PMEEAELFGASCYAAKVTLTAL-- 856
T + R+ + +R + E R A P + + AA +TAL
Sbjct: 634 STRLTCRESVIDYIVDLEEKEAQRAIAEGRTANPVHPFDNDRKDSLTPSAAYNYMTALIW 693
Query: 857 ---GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-- 911
E+ +A M + + A+ A N+ + + P G + Q V T L
Sbjct: 694 PSISEVVKAPIVAMKMIRQLARFAAKRNEGLEYPLPTGFILQQKIMATDMLRVSTCLMGE 753
Query: 912 -ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHDSYWTHA 969
++LQ ET+ V A PNFVH D SH+++T G+T A +HDS+ THA
Sbjct: 754 IKMSLQIETDVVDETAMMGAAAPNFVHGHDASHLILTVCDLVDKGITSVAVIHDSFGTHA 813
Query: 970 CDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYF 1028
++ LRE+ V++Y+ +NLLD ++ + +PE+G+FDL E+L S Y
Sbjct: 814 GRTADLRDSLREEMVKMYQNHNALQNLLDVHEERWLVDTGIQVPEQGEFDLNEILVSDYC 873
Query: 1029 F 1029
F
Sbjct: 874 F 874
>gi|328786720|ref|XP_001121402.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Apis
mellifera]
Length = 664
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 208/383 (54%), Gaps = 23/383 (6%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W D +G + +++ +Q + D I PAF R G+
Sbjct: 294 WPMDVITNIGKFLYKIILNDIMLQPEMLKGQDIKHSI-PAFYTLFRN------KGNYLSE 346
Query: 436 VIECNPLV---LKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQ 492
I+ +P + K L + +P PP+ WT G + + +R+ + Q
Sbjct: 347 QIKPHPFLSKLYKKLHMETLTFDVRLLPSYSPPLPWTSIHSGGYLITKTNFIRS-PIEHQ 405
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE 552
+K KQL PVF++L+ + + W++N +L ++ +I+ GG + V ++ L
Sbjct: 406 FQNIKS---KQLFPVFDSLNQISSIPWKINTAILDIVIKIFQDGGSVELNVPQSVSVLSP 462
Query: 553 KPETEDEAQLRKWQ---WKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609
A + + Q + K++ ++ ++ CD KLS+A +++ F+ P+N+D
Sbjct: 463 PCSLNKNATIEEKQQIAIAIAQYKQKKKDMYALWCDTLYKLSIANHFRNK-IFWLPYNLD 521
Query: 610 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL--YAGGVDKLSHE 667
FRGR YP+ PYLNHL SDL R +L FA+G+ LG +G++WLK+H+ NL + G S +
Sbjct: 522 FRGRVYPIPPYLNHLSSDLGRSLLLFAKGKPLGPNGINWLKLHVINLTNFKKGS---SLK 578
Query: 668 GRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIP 727
RL + + ++D+I DSA KPL G+ WW ++E+P+Q LA CI + AL+S + E +I+ P
Sbjct: 579 ERLEYADQNMDNIIDSATKPLTGKMWWKQSEEPWQTLAGCIEIANALKSPNIEKYITSFP 638
Query: 728 VHQDGSCNGLQHYAALGRDTLGA 750
VHQDGSCNGLQHYAALG+D +GA
Sbjct: 639 VHQDGSCNGLQHYAALGKDQIGA 661
>gi|108862033|ref|YP_654105.1| putative RNA polymerase [Enterobacteria phage K1-5]
gi|19338936|gb|AAL86891.1|AF478466_1 putative RNA polymerase [Enterobacteria phage K1-5]
Length = 875
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 222/848 (26%), Positives = 361/848 (42%), Gaps = 132/848 (15%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI-IGDAIEQEVRIHK------- 315
+ + + ++ A ITM +M +L T +QA + + D IE +VR K
Sbjct: 77 FINCVENEVAAYITMKIVMDMLNTD------VTLQAIAMNVADRIEDQVRFSKLEGHAAK 130
Query: 316 FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
+ EK KK + +K N ++ + + D + ++
Sbjct: 131 YFEKVKKSLKA-SKTKSYRHAHNVAVVAEKSVADRDADFSR----------------WEA 173
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W +D ++G ++E+L + + P F LRT GG
Sbjct: 174 WPKDTLLQIGMTLLEILENSVFFNGQ------------PVFLRTLRT-----NGGKHGVY 216
Query: 436 VIECNPLV---LKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQ 492
++ + V + + + Y P ++PP W G F R K
Sbjct: 217 YLQTSEHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNGG-FHTEKVASRIRLVKGN 275
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG-----GRLADLVDRND 547
R+ V++ KKQ+ V++A++ L TKW+VN VL V++ + L+DR +
Sbjct: 276 REHVRKLTKKQMPEVYKAVNALQATKWQVNKEVLQVVEDVIRLDLGYGVPSFKPLIDREN 335
Query: 548 VPLPEKP---------ETEDEAQLRKWQ----WKVRNVKKENRE--RHSQRCDIELKLSV 592
P P E ++ +WQ WK K E R S+ +
Sbjct: 336 KPANPVPLEFQHLRGRELKEMLTPEQWQAFINWKGECTKLYTAETKRGSKSAATVRMVGQ 395
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS-GLHWLKI 651
ARK + Y+ + +D R R Y L+ +DL + +L F EG+ L + L W +
Sbjct: 396 ARKYSQFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGKALLRFTEGQRLDSAEALKWFLV 455
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIF-----DSADKPLEGRRWWLKAEDPFQCLAV 706
+ AN + G DK + + R T N LD F D A PL +W + A+ P+ LA
Sbjct: 456 NGANNW--GWDKKTFDVR---TANVLDSEFQDMCRDIAADPLTFTQW-VNADSPYGFLAW 509
Query: 707 CINLT---EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPAD 763
C +AL + + F++H+PVHQDGSC+G+QHY+A+ RD +GA AVNL + P D
Sbjct: 510 CFEYARYLDALDEGTQDQFMTHLPVHQDGSCSGIQHYSAMLRDAVGAKAVNLKPSDSPQD 569
Query: 764 VYSGIAARVLVIIQRD----AQRDPAVFPD-----------ALRAKLLLSQVDRKLVKQT 808
+Y +A V+IQ++ D F ++ + + + R L K+
Sbjct: 570 IYGAVAQ---VVIQKNYAYMNAEDAETFTSGSVTLTGAELRSMASAWDMIGITRGLTKKP 626
Query: 809 VMTSVYGVTYIGARDQI------------KRRLKE-RGA----PMEEAELFGASCYAAKV 851
VMT YG T + R+ + +R + E R A P + + AA
Sbjct: 627 VMTLPYGSTRLTCRESVIDYIVDLEEKEAQRAIAEGRTANPVHPFDNDRKDSLTPSAAYN 686
Query: 852 TLTAL-----GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
+TAL E+ +A M + + A+ A N+ + +T P G + Q V
Sbjct: 687 YMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLEYTLPTGFILQQKIMATDMLRV 746
Query: 907 KTSLQ---ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVH 962
T L ++LQ ET+ V A PNFVH D SH+++T G+T A +H
Sbjct: 747 STCLMGEIKMSLQIETDVVDETAMMGAAAPNFVHGHDASHLILTVCDLVDKGITSIAVIH 806
Query: 963 DSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVFPPLPERGDFDLRE 1021
DS+ THA ++ LR + V++Y+ ++LLD ++ + +PE+G+FDL E
Sbjct: 807 DSFGTHAGRTADLRDSLRAEMVKMYQGRNALQSLLDEHEERWLVDTGIQVPEQGEFDLNE 866
Query: 1022 VLGSPYFF 1029
+L S Y F
Sbjct: 867 ILVSDYCF 874
>gi|414087588|ref|YP_006987773.1| putative RNA polymerase [Enterobacteria phage vB_EcoP_ACG-C91]
gi|383396018|gb|AFH19836.1| putative RNA polymerase [Enterobacteria phage vB_EcoP_ACG-C91]
Length = 875
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 222/848 (26%), Positives = 361/848 (42%), Gaps = 132/848 (15%)
Query: 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI-IGDAIEQEVRIHK------- 315
+ + + ++ A ITM +M +L T +QA + + D IE +VR K
Sbjct: 77 FINCVENEVAAYITMKIVMDMLNTD------VTLQAIAMNVADRIEDQVRFSKLEGHAAK 130
Query: 316 FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
+ EK KK + +K N ++ + + D + ++
Sbjct: 131 YFEKVKKSLKA-SKTKSYRHAHNVAVVAEKSVADRDADFSR----------------WEA 173
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W +D ++G ++E+L + + P F LRT GG
Sbjct: 174 WPKDTLLQIGMTLLEILENSVFFNGQ------------PVFLRTLRT-----NGGKHGVY 216
Query: 436 VIECNPLV---LKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQ 492
++ + V + + + Y P ++PP W G F R K
Sbjct: 217 YLQTSEHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNGG-FHTEKVASRIRLVKGS 275
Query: 493 RDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG-----GRLADLVDRND 547
R+ V++ KKQ+ V++A++ L TKW+VN VL V++ + L+DR +
Sbjct: 276 REHVRKLTKKQMPAVYKAVNALQATKWQVNKEVLQVVEDVIRLDLGYGVPSFKPLIDREN 335
Query: 548 VPLPEKP---------ETEDEAQLRKWQ----WKVRNVKKENRE--RHSQRCDIELKLSV 592
P P E ++ +WQ WK K E R S+ +
Sbjct: 336 KPANPVPLEFQHLRGRELKEMLTPEQWQAFINWKGECTKLYTAETKRGSKSAATVRMVGQ 395
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS-GLHWLKI 651
ARK + Y+ + +D R R Y L+ +DL + +L F EG+ L + L W +
Sbjct: 396 ARKYSQFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGKALLRFTEGQRLDSTEALKWFLV 455
Query: 652 HLANLYAGGVDKLSHEGRLAFTENHLDDIF-----DSADKPLEGRRWWLKAEDPFQCLAV 706
+ AN + G DK + + R T N LD F D A PL +W + A+ P+ LA
Sbjct: 456 NGANNW--GWDKKTFDVR---TANVLDGEFQDMCRDIAADPLTFTQW-VNADSPYGFLAW 509
Query: 707 CINLT---EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPAD 763
C +AL + + F++H+PVHQDGSC+G+QHY+A+ RD +GA AVNL + P D
Sbjct: 510 CFEYARYLDALDEGTQDQFMTHLPVHQDGSCSGIQHYSAMLRDEVGAKAVNLKPSDSPQD 569
Query: 764 VYSGIAARVLVIIQRD----AQRDPAVFPD-----------ALRAKLLLSQVDRKLVKQT 808
+Y +A V+IQ++ D F ++ + + + R L K+
Sbjct: 570 IYGAVAQ---VVIQKNYAYMNAEDAETFTSGSVTLTGAELRSMASAWDMIGITRGLTKKP 626
Query: 809 VMTSVYGVTYIGARDQI------------KRRLKE-RGA----PMEEAELFGASCYAAKV 851
VMT YG T + R+ + +R + E R A P + G + AA
Sbjct: 627 VMTLPYGSTRLTCRESVIDYIVDLEEKEAQRAIAEGRTANPVHPFDNDRKDGLTPSAAYN 686
Query: 852 TLTAL-----GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
+TAL E+ +A M + + A+ A N+ + + P G + Q V
Sbjct: 687 YMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLEYPLPTGFILQQKIMATDMLRV 746
Query: 907 KTSLQ---ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVH 962
T L ++LQ ET+ V A PNFVH D SH+++T G+T A +H
Sbjct: 747 STCLMGEIKMSLQIETDVVDETAMMGAAAPNFVHGHDASHLILTVCDLVDKGITSIAVIH 806
Query: 963 DSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVFPPLPERGDFDLRE 1021
DS+ THA ++ LR + V++Y+ ++LLD ++ + +PE+G+FDL E
Sbjct: 807 DSFGTHAGRTADLRDSLRAEMVKMYQGRNALQSLLDEHEERWLVDTGIQVPEQGEFDLNE 866
Query: 1022 VLGSPYFF 1029
+L S Y F
Sbjct: 867 ILVSDYCF 874
>gi|338827175|ref|YP_004539106.1| hypothetical protein LIMEzero_ORF33 [Pantoea phage LIMEzero]
gi|332800724|emb|CBY88564.1| hypothetical protein [Pantoea phage LIMEzero]
Length = 810
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 173/605 (28%), Positives = 271/605 (44%), Gaps = 60/605 (9%)
Query: 458 YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLE-------PVFEA 510
Y PMLVPPV+ + + P G + Q + R +++ PV E
Sbjct: 232 YPPMLVPPVQIAEDGRSGMWQSP-------GQRDQYRVISRMNRREYRALKIDPTPVIEP 284
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWS-------------------CGGRLADLVDRNDVPLP 551
L + +R+N VL +L R + G A + + P
Sbjct: 285 CMALSSVPYRINPLVLELLQRSRTDVMGLPVMPVEPKLPFQIPAGVTFAQYISK----FP 340
Query: 552 EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFR 611
E + + +A+ +++ + R R+ SQ + ++ A++ + + Y P D R
Sbjct: 341 EPMQQQMDAEAHEFKVRTRIYHTNMRKFMSQMMALNAAVAEAQRYAEFDKVYLPTYADTR 400
Query: 612 GRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLA 671
GR Y LN G D R +LE AE LG GL+WLK+H+AN + G D + R
Sbjct: 401 GRIY-YSSTLNPQGIDGVRALLELAEPVALGDDGLYWLKVHIANSF--GYDATDFDDRAK 457
Query: 672 FTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQD 731
+T+ L + ++ P +W +A+ P A + L A+ S +P T++ + D
Sbjct: 458 WTDKALPRLREACRIPEAYDSFWSEADSPITAWAAAVELLRAIDSGNPATYMCRVVTQWD 517
Query: 732 GSCNGLQHYAALGRDTLGAAAVNLV-AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
+C+GLQH +A+ RD++G AAVNL+ + + AD+Y +A L +R V
Sbjct: 518 ATCSGLQHLSAMLRDSVGGAAVNLLDSPGRKADIYLKVADSAL----EGLRRSELVSSSP 573
Query: 791 LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA-ELFGASCYAA 849
L LL V R K+ VMT VYG T G D L+E P+ E L + + A
Sbjct: 574 LGQWLLRVGVPRAWAKKPVMTYVYGATKHGMIDYYCLMLRESKTPLPEGFRLMQCATFIA 633
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV---VQPYRKLGRHTV 906
+ A+ + AA +M+WL E A E + V +T P GL V Q YR+
Sbjct: 634 NLMWDAIPRVVPAAARLMAWLQEIANTTGKEGEYVTFTAPSGLRVPNQYQMYRETSMRLN 693
Query: 907 KTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYW 966
+ + L+ ++ ++ AF PNFVH++D SHMM G+ +HDS+
Sbjct: 694 LLGVHAIQLREAQDRPDPRKCEAAFAPNFVHAMDASHMMRVLHQLWNNGIYMVSIHDSFG 753
Query: 967 THACDVDEMNRILREKFVELYEM--PIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLG 1024
A ++RI+RE+FV +Y+ PI E L + ++ PE GD D+ VL
Sbjct: 754 CAAAHAGTLHRIIREEFVRMYQQYNPIAE-LAREYNRT--------CPEPGDLDISNVLK 804
Query: 1025 SPYFF 1029
S FF
Sbjct: 805 SSKFF 809
>gi|148699723|gb|EDL31670.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_e [Mus
musculus]
Length = 935
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 200/373 (53%), Gaps = 26/373 (6%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A P H S +
Sbjct: 543 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARQGAQRSIPVLYHVYSFRS------YR 594
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 595 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 654
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD--RN 546
Q + +++ P QL +AL LGN WRVN +L ++ +I+ G + V R+
Sbjct: 655 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 714
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +++LRK ++ K RE HS R + +LS+A+ ++
Sbjct: 715 EAPRPARYQLPPGSTPVHKSELRK---ELARCLKVAREMHSLRSEALYRLSLAQHLR-HR 770
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 771 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 829
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+ + A+RS P
Sbjct: 830 KKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPA 889
Query: 721 TFISHIPVHQDGS 733
+ISH+PVHQ G+
Sbjct: 890 AYISHLPVHQVGT 902
>gi|304274392|gb|ADM18943.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274394|gb|ADM18944.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274400|gb|ADM18947.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274402|gb|ADM18948.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
Length = 165
Score = 224 bits (572), Expect = 1e-55, Method: Composition-based stats.
Identities = 102/168 (60%), Positives = 125/168 (74%), Gaps = 3/168 (1%)
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+ KL +AR DE+ FY+PHN+DFRGRAYP+ P L+H+G D+CRG+L F E + LG+ G
Sbjct: 1 LNYKLEIARAFIDEK-FYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERG 59
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
L WLKIHL+NL G DK S + R AF HLDDIFDSAD+PL+G+RWWLKA+DP+QCLA
Sbjct: 60 LRWLKIHLSNL--TGFDKASFDEREAFAMEHLDDIFDSADQPLDGKRWWLKADDPWQCLA 117
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
CI L ALRS P + +P+HQDG+CNGLQHYAALG D GA V
Sbjct: 118 TCIELAAALRSPIPTEYACALPIHQDGTCNGLQHYAALGGDLRGAHQV 165
>gi|304274396|gb|ADM18945.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274398|gb|ADM18946.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
Length = 165
Score = 224 bits (571), Expect = 2e-55, Method: Composition-based stats.
Identities = 101/168 (60%), Positives = 125/168 (74%), Gaps = 3/168 (1%)
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+ KL +AR DE+ FY+PHN+DFRGRAYP+ P L+H+G D+CRG+L F E + LG+ G
Sbjct: 1 LNYKLEIARAFIDEK-FYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERG 59
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
L WLKIHL+NL G DK S + R AF HLDD+FDSAD+PL+G+RWWLKA+DP+QCLA
Sbjct: 60 LRWLKIHLSNL--TGFDKASFDEREAFAMEHLDDVFDSADQPLDGKRWWLKADDPWQCLA 117
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
CI L ALRS P + +P+HQDG+CNGLQHYAALG D GA V
Sbjct: 118 TCIELAAALRSPVPTEYACALPIHQDGTCNGLQHYAALGGDLRGAHQV 165
>gi|422937609|ref|YP_007007815.1| putative DNA-dependent RNA polymerase [Aeromonas phage phiAS7]
gi|374713597|gb|AEZ65066.1| putative DNA-dependent RNA polymerase [Aeromonas phage phiAS7]
Length = 816
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 211/800 (26%), Positives = 352/800 (44%), Gaps = 86/800 (10%)
Query: 260 AYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEK 319
AY+P L D ++++ + L+ + + E G + A IG + E+ + F +
Sbjct: 72 AYSPLLHALDPDAVSLLAITTLVESVCSRKE-GYIHLGFLASEIGRRVYGELALASFRDI 130
Query: 320 TKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQD 379
N E E + + + LR K+T + + K + W
Sbjct: 131 --------NPELYEALTKDLQSKMSQDLRHKLTVFRMQAQ--------KAGIELPEWTPS 174
Query: 380 ARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIEC 439
+A+VGS ++ L+ + Q D P + L TV+ G K V+
Sbjct: 175 QKAQVGSYLVSLMEK---------QSGD------PKYLCELDTVAT----GHKSAYVVYL 215
Query: 440 NPLVLKGLERTARHMVIPY---MPMLVPPVKWT--GYDKGAHFFLPSYVMRTHGAKQQRD 494
+ V + + M++ P L+PP W G G + L +R ++
Sbjct: 216 SKHVHELMAEIEDRMMLKAGFAAPCLIPPQPWDADGTQGGFYGDLKVRAVRFFKGSSEQW 275
Query: 495 TVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP 554
+ R+ V L+ + N W+VN +L ++ ++ + G + +P PE+P
Sbjct: 276 EIMRSEGHDPAIVLGMLNAVQNVAWKVNPFILDLIKQMRAKGLETKTVRTTAALPKPERP 335
Query: 555 ----------ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
E E + ++W+ K+R+ E R+ + + ++ A +M + FY+
Sbjct: 336 LFLDLQDGALTPEQEEEKKRWKRKMRDWHTEVRKVSRIEARLAVAIAAAEEMLKHDRFYF 395
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL-GKSGLHWLKIHLANLYAGGVDK 663
H V R R YP+ L+ G+D + +L A+G + L+W K+++A + G+DK
Sbjct: 396 THQVCDRFRMYPVSGPLSPQGADNQKALLHSADGGPIDSDEALYWFKLNIAAKF--GIDK 453
Query: 664 LSHEGRLAFTENHLDDIFDSADKPL--EGRRWWLKAEDPFQCLAVCINLTEALRSS-SPE 720
LS E + + +++ +I +A P + WW +A+ P Q +AVC E R P
Sbjct: 454 LSPEDCVKWVDDNETNIIRAASDPAGRDAFHWWSQADKPLQFIAVC---DEYRRYKLDPS 510
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK--PADVYSGIAARVLVIIQR 778
F++ I DG+CNGLQ+Y+AL RD +G A NL++ E PAD+Y +A V +
Sbjct: 511 GFVARIACAMDGTCNGLQNYSALLRDEVGGRATNLISAEDRVPADIYGDVARASWVRLLE 570
Query: 779 DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE 838
+ R + +RKL K +VMT VYG TY R I E + E
Sbjct: 571 SVEC-------PFRTAWMAHGFNRKLTKPSVMTQVYGSTYGTCRKSILSYCIEN--ELFE 621
Query: 839 AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN-QPVRWTTPLGLPVVQP 897
E + + +A K+ + ++ A+ M WL E A + E + W P G VVQ
Sbjct: 622 DEEYEHADFAGKLVWAGIDDVVVKAKEAMKWLRESAGAVMREGANYITWLAPSGARVVQI 681
Query: 898 YRKLGRHTVKTSL-QILTLQ----RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
Y K V T + + LQ +K R R AFPPNF+HS+D SHM M AV
Sbjct: 682 YNKYDELRVWTHVGNKIRLQLRGPEHPDKPDKMRHRNAFPPNFIHSVDASHMAMVAVRMV 741
Query: 953 KA---GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFP 1009
K G+ +HD + + R++RE+F+ ++E E + ++ +P L
Sbjct: 742 KEFGLGVFLHLIHDDFGALPHQAGTLARVIREEFIAMHEGYSLERI----REQYPFLA-- 795
Query: 1010 PLPERGDFDLREVLGSPYFF 1029
P+P+RG+ D+ VL S FF
Sbjct: 796 PVPQRGNLDINCVLDSVNFF 815
>gi|431809442|ref|YP_007236337.1| DNA-directed RNA polymerase [Yersinia phage phi80-18]
gi|398313522|emb|CCI88870.1| DNA-directed RNA polymerase [Yersinia phage phi80-18]
Length = 817
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 203/801 (25%), Positives = 356/801 (44%), Gaps = 87/801 (10%)
Query: 260 AYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEK 319
AY+P L D +A+IT++ L+G G ++ A IG + E+ + F
Sbjct: 72 AYSPLLHSLDPDAVALITINTLLGSFQ--ARDGEIQLSTLAYSIGRNVYGELALAHF--- 126
Query: 320 TKKKNETKNKEDEEGDESNTVTTE-QEKLRKKVTDLIKKQKLPAVRRIVKGQD-DFKPWG 377
D + D T+T++ Q+K+ + + + KL R K + + W
Sbjct: 127 ----------RDMKPDLYETLTSDLQQKMSRDL-----RHKLTIFRMQAKENNIELPEWT 171
Query: 378 QDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVI 437
+ +VG ++ L+ T+ D+F L ++ G KY +
Sbjct: 172 PSQKLQVGVYLLSLIDGTS------------GHDVF------LCNMNLRQSGNKTKYMIS 213
Query: 438 ECNPL--VLKGLERTARHMVIPYMPMLVPPVKWTGYDK--GAHFFLPSYVMRTHGAKQQR 493
+ ++ LE + + P + PP WTG D G H L +R +
Sbjct: 214 LSENIQHIMGDLEYSLINKSGFAAPCIYPPQDWTGEDGVGGFHGDLKIRAVRFFKGSSYQ 273
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
+ T L+ T W+VN +L+++ + G + P +
Sbjct: 274 WEIMNTLGCDNTKTLAMLNAHQRTAWKVNPFILNLVTEMRKRGRETKTVATLAAHKKPTR 333
Query: 554 PETED--------EAQLRKW-QWKVRNVKKENRERHSQRCDIELKLSV--ARKMKDEEGF 602
P+ D A+ +++ QWK + + R ++ L L+V A++M + F
Sbjct: 334 PDFLDLKDTKDFTHAEFKEFAQWKAETRDWHTKTKKVTRVELRLHLAVEAAKEMLGYDEF 393
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGK-SGLHWLKIHLANLYAGGV 661
++ + VD R RAYP+ LN GSD+ + +L A G + L+W K+ +A+ + G+
Sbjct: 394 FFVYQVDSRVRAYPVSGPLNPQGSDVQKALLHAAHGEPIDTPEALYWFKLTIASKF--GI 451
Query: 662 DKLSHEGRLAFTENHLDDIFDSADKPLE--GRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
DKL+ + + +++ D+I + P + WW A+ P Q +A+C + ++ ++
Sbjct: 452 DKLAPLECIKWVDDNHDNILKAVCDPCDRDAYLWWSAADKPMQFIALCDEYSRFIKDTA- 510
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYSGIAARVLVIIQ 777
F S I DG+CNGLQ+Y+A+ RD +G A NL+ A P D+Y +A +
Sbjct: 511 -GFRSRIAAAMDGTCNGLQNYSAMLRDEVGGRATNLISDASGVPNDIYGDVA-------K 562
Query: 778 RDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPME 837
+R ++ R +R L K++VMT VYG T+ R + +++ ++
Sbjct: 563 ASYKRLCSMVVSDERLAWQEHGFNRSLTKKSVMTQVYGSTFGTCRKSVIEYCQDKDLFLK 622
Query: 838 EAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN-QPVRWTTPLGLPVVQ 896
E FG S YAA++ +G++ A+ M WL + A +I E + + W TP G VVQ
Sbjct: 623 ELR-FGYSDYAARLIWDGIGDVVVKAKEAMDWLRKSAGLIMKEGAEYISWPTPTGYRVVQ 681
Query: 897 PYRKLGRHTVKTSL-QILTLQRETEKVMVK----RQRTAFPPNFVHSLDGSHMMMTAVAC 951
Y K V+ + Q + L+ + R R AFPPNF+HS+DGSHM +T +
Sbjct: 682 IYDKCEMIRVQAHIGQKIALKVHNHDKPIGPDKMRHRNAFPPNFIHSVDGSHMGLTTIDI 741
Query: 952 RKA---GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
+ G +HD + ++ + +R+ FV+++ L+S ++ +P L
Sbjct: 742 EEKCGRGTFMHFIHDDFGVLPKHAAQLAKSIRQCFVDMHS----GYDLESIREEYPFLTE 797
Query: 1009 PPLPERGDFDLREVLGSPYFF 1029
P P +G+ D+ VL S FF
Sbjct: 798 P--PSKGNLDINCVLNSINFF 816
>gi|281306683|ref|YP_003345489.1| predicted phage RNA Polymerase [Pseudomonas phage phi-2]
gi|271277988|emb|CBH51594.1| predicted phage RNA Polymerase [Pseudomonas phage phi-2]
Length = 814
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 223/837 (26%), Positives = 357/837 (42%), Gaps = 93/837 (11%)
Query: 227 LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHK---VAYAPYFDQLPADMMAVITMHKLMG 283
LP K++ F +R +I EQE+ KH+ A + +L AD+ AV+ + MG
Sbjct: 36 LPRGKAVIARMFGDVRASIVAEQEK----KHRGVGAALRGWLRELEADVAAVLALRVTMG 91
Query: 284 -LLMTGGEHGRA--RVVQAACIIGD--AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESN 338
+L T G H + A IG A+E +VR + + +D
Sbjct: 92 CVLQTFGTHSCTPPTFQRIATAIGREWAMELKVRAAARINPVYYDGAVQRLKDSN----- 146
Query: 339 TVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398
TT Q+ +R ++ +++ L V D P KVG +
Sbjct: 147 --TTSQKHVRMAMSRVVE-NSLDGVY-----DSDLTPTEYMHLGKVG------------L 186
Query: 399 QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY 458
Q+ D D+ T + V E + + + E K E A+ +
Sbjct: 187 QACMDA---GLVDVVRTTTRSGHHVEYELTAPIRDFLLDE------KASEWLAQPIS--- 234
Query: 459 MPMLVPPVKWTGYDKGAHFF----LPSYVMRTHG---AKQQRDTVKRTPKKQLEPVFEAL 511
+ M+ PP++W G L ++R G K R+ K + + FE +
Sbjct: 235 LSMISPPLRWDRIVGGGFHTEKRQLKFPLIRVGGRIRHKHIREYRKAMSAETMPNFFEPI 294
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETE----------DEAQ 561
+ L + + ++ + + IW GG + + + P P E D
Sbjct: 295 NYLQSIPYSMSEDMYDTVKNIWQEGGGVLKVPKKAPPVKPVFPHAEGWNKEGASEADMEV 354
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
+W+ + N + RE S ++ + M + + D RGR Y
Sbjct: 355 FNRWKRQTFNWHNDLREHKSMAWEMH-SFNKVVGMARGKPVWNAMFADTRGRLY-YRGAC 412
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
+ GSD + ++ FA + LG G++WLK+H+AN + G DK + R A+T+ H + +
Sbjct: 413 SPQGSDATKAVVHFARKKPLGHRGVYWLKVHIANCF--GFDKKKFKERAAWTDQHWEHLL 470
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
P + + P +A L A S +PETF S I VH D +C+GLQH +
Sbjct: 471 HGVTDPSNSDVYRANNDAPLMAVAAVRELAAAYASGNPETFESGIIVHMDATCSGLQHLS 530
Query: 742 ALGRDTLGAAAVNLV-AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ- 799
A+ RD +G VNLV ++ AD+Y+ +A ++ I+RDA+ A +L Q
Sbjct: 531 AMLRDPVGGRYVNLVPGGDEKADIYARVAHLAMMQIERDAEGGHACG--------MLWQA 582
Query: 800 --VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL-FGASC-YAAKVTLTA 855
V RKL K VMT VYG T D I L E+G ++ + F C Y AK+ A
Sbjct: 583 LGVSRKLAKGPVMTYVYGATLRSVADGIGDFLDEQGYSAKDTGVPFMKMCMYLAKLLFKA 642
Query: 856 LGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT---SLQI 912
+ + AA +M WL + + QPV +TTP GL V Y + V+ ++
Sbjct: 643 IEDTVPAAAALMRWLKDVVRH-HDRTQPVVFTTPHGLRVHHDYPDEEQTRVRVRSCGVEY 701
Query: 913 LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDV 972
+ + ++ E R + A PNFVH++D H+ MT + L A +HDS+ TH CDV
Sbjct: 702 VVMYQQLETSKTTRMQNAIAPNFVHAMDACHLSMTTQRMAELDLDMAVIHDSFGTHPCDV 761
Query: 973 DEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
D M+ +R F+ELY ++L +F + P +GD DL ++ S +FF
Sbjct: 762 DAMHECIRAAFIELYS---DNDVLLNFAIDTGTSILA--PAKGDLDLSTLMDSEFFF 813
>gi|167564987|ref|ZP_02357903.1| DNA-directed RNA polymerase [Burkholderia oklahomensis EO147]
Length = 565
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 156/537 (29%), Positives = 250/537 (46%), Gaps = 23/537 (4%)
Query: 508 FEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEA--QLRKW 565
EAL+ + T+WR+N VL V G ++ ++PLPE P D+ + +
Sbjct: 38 LEALNHIQKTRWRINRDVLDVAMGCKVRGLEVSGFPSAEEIPLPEYPAHLDKTSPEFKTH 97
Query: 566 QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLG 625
+ + EN R + L +A ++ D ++PH DFRGR YP L+ G
Sbjct: 98 IRERERIHTENARNAGMRLKLWGLLQMAEELADFPALWFPHYADFRGRFYPRPQDLHTQG 157
Query: 626 SDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSAD 685
L +G+LEF+E + G +W+++++AN + G DKL + R +T +HL+ I A
Sbjct: 158 DSLVKGLLEFSEPVAITDRGWYWMRVNVANYF--GQDKLPLDERAQWTLDHLEGILAVAT 215
Query: 686 KPLEGRR---WWLKAEDPFQCLAVCINLTEA----LRSSSPETFISHIPVHQDGSCNGLQ 738
PL+ + +W + P++ LA C + L + + E S + D +C+G+Q
Sbjct: 216 DPLDDHKAFEFWSTCDSPWEFLAACSEVKRVCDFMLANGTCEGHESRMVCRYDATCSGIQ 275
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS 798
H AAL +D A VN++ D+Y +A ++ D QRD A A
Sbjct: 276 HLAALMKDEKSAVRVNVLPTGNREDIYKDVAE----VVMADVQRDTVNSATAATASQWAG 331
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE--AELFGASCYAAKVTLTAL 856
+V+RK VK+ VMT+ YGV+ G Q+ +++ A E E + A+ Y + + AL
Sbjct: 332 KVERKTVKRAVMTTPYGVSERGILTQL---IQDGFADHIENGKERYAAADYLTQKIVGAL 388
Query: 857 GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ 916
E +A R M + A + P+ W TP G Q Y K + T + L+
Sbjct: 389 DESIEAPRRAMDYFRSVAVFLEERGLPLVWDTPSGFTGKQAYYKTAEKRIDTLHGKVMLR 448
Query: 917 RETEKVMVK--RQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVD 973
E K +Q+ PN VHS D +H+ + V ++ G+ A VHDS+ HA + D
Sbjct: 449 YEEPVAGFKPGKQKLGAAPNVVHSFDAAHLALVCVEMKRRGVRDLAFVHDSFGCHAENSD 508
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+ +++FV LY E S K P +P G+ D+ VL S +FF+
Sbjct: 509 VLLEATKQQFVALYNSDTLEQWRQSVIKHSGCPDVPEVPPLGNLDVERVLESEFFFS 565
>gi|448260253|ref|YP_007348349.1| DNA-dependent RNA polymerase [Cronobacter phage vB_CskP_GAP227]
gi|428231494|gb|AFY63147.1| DNA-dependent RNA polymerase [Cronobacter phage vB_CskP_GAP227]
Length = 816
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 203/807 (25%), Positives = 352/807 (43%), Gaps = 100/807 (12%)
Query: 260 AYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACI---IGDAIEQEVRIHKF 316
AY+P L D +A++ + + + L + G VQA + IG + E+ + F
Sbjct: 72 AYSPLLFSLDMDAVALLAISEALKLCVAGP-------VQATTLGFAIGKVLYGELALAAF 124
Query: 317 LEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPW 376
+ +N E L++K++ ++ + + K + W
Sbjct: 125 RDMN----------------ANLYEVLTEDLQRKMSKDLRHRMTIFRMQAQKNGIELPEW 168
Query: 377 GQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGV 436
+ +VG V+ L++ +P + D + L++ K+TK +
Sbjct: 169 TPTQKLQVGMYVMGLMS------TPNE-------DGEVLLENTLKSYGKKTKY------M 209
Query: 437 IECNPLV---LKGLERTARHMVIPYMPMLVPPVKWTGYDK--GAHFFLPSYVMRTHGAKQ 491
++ P + ++G+E + P L+PP WTG + G H L +R
Sbjct: 210 VDLAPEIHKLMQGIEGSIIGRSGFAAPCLIPPQDWTGEEGVGGFHGDLKIRAVRFFKGST 269
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
+ V + E L+ W+VN +L +L + G + V+ +
Sbjct: 270 YQWEVMNSEGHNPEVTLAMLNAHQKVAWKVNPFILDLLKGMRYHGYGIRKKVEFSSAHEK 329
Query: 552 EKPETED--------------EAQLRKWQWKVRNVKKENRE--RHSQRCDIELKLSVARK 595
KPE + + W+ K+R+ E + R RC+ + +S A++
Sbjct: 330 IKPERLEWLDTVKEGDFTDVQQYNFETWKRKMRDWHTEAKRIGRVELRCN--MAISAAQE 387
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGK-SGLHWLKIHLA 654
+ + FYY + VD RGR YP+ LN GSD+ + +L A+G + L W K+ +A
Sbjct: 388 VSTLDRFYYVYQVDNRGRMYPVSGLLNPQGSDVQKSLLHAADGEPIDTPEALWWFKMGIA 447
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE--GRRWWLKAEDPFQCLAVCINLTE 712
+ + G+DKL+ E + + +++ +I +A PL+ WW A+ P Q +A+C
Sbjct: 448 SKF--GIDKLAPEDCVKWVDDNHANIIRAAGDPLDRDAFNWWTGADKPLQFIALCDEYRR 505
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK--PADVYSGIAA 770
+ P F+S I V DG+CNGLQ+Y+A+ RD++G A NL++ + P D+Y +A
Sbjct: 506 --YNEDPAGFVSRIAVAMDGTCNGLQNYSAMLRDSVGGRATNLISADNGIPNDIYGDVAK 563
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
+ R + LR + DR L K++VMT VYG T+ R I
Sbjct: 564 ASFKRLGRMEASN-------LRTDWVNYGFDRSLTKKSVMTQVYGSTFGTCRKSIIEYCY 616
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN-QPVRWTTP 889
++ + E + + YAA++ +G++ A+ M WL + A + E + + W P
Sbjct: 617 DK--QIFEGTEYDHADYAARLVWDGIGDVVVKAKEAMDWLRKSAGAVMKEGAEYITWLAP 674
Query: 890 LGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK-----RQRTAFPPNFVHSLDGSHM 944
G VVQ Y K V+ + R + + R R A PPNF+HS+D SHM
Sbjct: 675 TGFRVVQVYNKHKTMQVRAHIGKNVRLRVPDPENIDGPDKMRHRNALPPNFIHSIDSSHM 734
Query: 945 MMTAV--ACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKS 1002
+V A G+ +HD + ++R++RE+FV+++E L+ F+
Sbjct: 735 AFVSVRLAAELDGMFMHFIHDDFGVLPKHAALLSRVIREEFVKMHE----NYSLEDFKAG 790
Query: 1003 FPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ L P P +GD D+ VL S FF
Sbjct: 791 YEFLDEP--PAKGDLDINCVLTSVNFF 815
>gi|291334905|gb|ADD94542.1| DNA directed RNA polymerase [uncultured phage MedDCM-OCT-S08-C159]
Length = 584
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 167/598 (27%), Positives = 284/598 (47%), Gaps = 34/598 (5%)
Query: 449 RTARHMVIPYMPMLVP----PVKWTGYDKGAHFFLPSYVMRTHGAKQ-QRDTVKRTPKKQ 503
R R I P+L P P WT + G ++ + ++T K RD++KR ++
Sbjct: 3 RKGRSNRIAAYPLLQPCFDKPRPWTSINDGGYY---TKRLQTRAIKTTDRDSIKRLQEEN 59
Query: 504 LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP---ETEDEA 560
L +AL T W VN VL +L W + L+DR LP KP +T ++
Sbjct: 60 LSTSLKALTLASQTAWTVNKFVLEILVYCWEERIEVGSLIDRELAELPTKPLDIDTNPDS 119
Query: 561 QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPY 620
+ ++W++ + N S+R I + A+K DE+ F++ + D+ GR YP+ +
Sbjct: 120 R-KEWRYLASLIHDMNAHNKSKRYQILSMIDTAQKYSDEK-FFHVYQFDWTGRMYPVTAH 177
Query: 621 LNHLGSDLCRGILEFAEGRTL-GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDD 679
+ G+D+ RG+ F +G + K L+WL I AN + G++K S+E RL + D
Sbjct: 178 FHPQGNDIARGLHIFHKGAAINNKKQLNWLAIAGANHW--GLNKESYEERLEWAYIAGTD 235
Query: 680 I-FDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQ 738
+ D P+ W KA++P+Q L C E R ++SH DG+ NG Q
Sbjct: 236 LALQIYDDPIAHVDIWGKAKEPWQFLGWCKEWAEYQRDGW--GYVSHHVCCLDGTNNGYQ 293
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS 798
H A L + A VNL KP D+Y+ I +L +++D + P+A +
Sbjct: 294 HIAGLTGNQHLANKVNLQNVNKPQDLYAQILEVLLQELEKDDK------PEAKEWLEIKD 347
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGE 858
++ RK +K+ V+ Y T G + I++ M A+ F + Y A + ++
Sbjct: 348 KLTRKFIKKPVLMVPYNSTTFGIANYIEKYFVNENISM--AKNFQNNFYLAHMIEHSVKS 405
Query: 859 MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ-- 916
+ + ++ L A+ EN+P+RW +P G + Q Y +K+ + T+
Sbjct: 406 VTPESPLLLKHLATIARCFNKENKPIRWHSPSGFLIEQNYYVNQSKRIKSKISNSTIYLN 465
Query: 917 -RETEKVMV--KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDV 972
ET+K V ++Q FP N++HSLD +H ++ VA K GL F +HD Y + A ++
Sbjct: 466 LAETDKTKVDKRKQHQGFPSNYIHSLDAAHCHLSLVAASKKGLDQFCIIHDCYGSPASEL 525
Query: 973 DEMNRILREKFVELYEMPIFENLL-DSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ + + +++ F ++Y +NL + Q+ P G+FD+ +VL +PY F
Sbjct: 526 ETLIQCVKQSFYDIYSDNNLDNLYHQAVQQLSETKDLPKALRMGEFDITDVLNAPYIF 583
>gi|158345171|ref|YP_001522878.1| putative RNA polymerase [Enterobacteria phage LKA1]
gi|114796467|emb|CAK25005.1| putative RNA polymerase [Pseudomonas phage LKA1]
Length = 811
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 169/594 (28%), Positives = 277/594 (46%), Gaps = 42/594 (7%)
Query: 461 MLVPPVKWTGYDKGAHFF------LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTL 514
M P W G G ++ P + K R ++ K + V + L
Sbjct: 234 MFAEPTPWDGAAGGGYYTERMKIDFPLRRVNRRTRKPLRRVIRDNVGKCTD-VLACANYL 292
Query: 515 GNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK-------PETEDEAQLRKW-Q 566
+ ++ L ++ ++W+ GG + R P P ++ EA+L ++
Sbjct: 293 QAQAFSIHTPTLELIKQVWNSGGGALGIPKREAPPEPAFPFPETWDKDSATEAELERFAS 352
Query: 567 WKVR----NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622
WK R ++ K+ + Q L++S + ++P +D RGR Y LN
Sbjct: 353 WKRRMHAWHMGKKELRKAQQGIGQALRVSAGAAAR----VWFPTFIDSRGRYY-YRGVLN 407
Query: 623 HLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFD 682
G ++C+ +L FA+ R LG+ GL+W+++H+AN + G DK + R A+ ++F
Sbjct: 408 PQGDEMCKALLHFADKRPLGERGLYWIQVHVANCF--GEDKARFDARAAWAVERKAELFA 465
Query: 683 SADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
+ + P + + +A+ P A EA RS +P + + +P+H D +C+GLQH++A
Sbjct: 466 ALEAPADS--CFAEADTPLGAFAAVWEWREAERSGNPAAYCTGLPIHMDATCSGLQHFSA 523
Query: 743 LGRDTLGAAAVNLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS-Q 799
+ RD +G VNL + AD+Y +A I RDA +PA D AKL +
Sbjct: 524 MLRDPVGGQYVNLYDSGGDSKADIYRKVAEVAQTRINRDAA-NPAS-KDWHLAKLWTQWE 581
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA-ELFGASCYAAKVTLTALGE 858
+ R L K VMT VYG T G + I L+E+ A + + +F + Y +V +A+ +
Sbjct: 582 IPRTLAKGPVMTYVYGATLRGVAEGIADWLEEQQAIVPDGVRIFDLAYYLGRVLFSAIED 641
Query: 859 MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT---SLQILTL 915
+ AA M WL E A+ A + P+ W +P GL V YR H VK + + +
Sbjct: 642 VVPAAAAAMRWLRERARSAAGDT-PMLWFSPTGLLVEHDYRDFVEHRVKIRSCGITDIVV 700
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+ + ++ R + A PNFVH+LD +H+ TA G +HDS+ TH VDEM
Sbjct: 701 REDLDQTRGNRMQNAVAPNFVHALDAAHLTFTARLLEDGGHAMVAIHDSFGTHPSSVDEM 760
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ +RE FV LY F+ + + + V P P +G+ DL S + F
Sbjct: 761 HTAIREAFVRLYSE--FDPITLFLRGIGQEEVAP--PPKGNLDLTLFRSSEFGF 810
>gi|156402875|ref|XP_001639815.1| predicted protein [Nematostella vectensis]
gi|156226946|gb|EDO47752.1| predicted protein [Nematostella vectensis]
Length = 686
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 153/257 (59%), Gaps = 22/257 (8%)
Query: 793 AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVT 852
A LL +V R++VKQTVMT VYGVT++G R QI+R+LK+ ++E LF AS Y
Sbjct: 431 ATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD--LDERVLFEASAYLVHKV 488
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQI 912
++G+MF A+ I W A IA V W TPL L V QPY K T+KT LQ
Sbjct: 489 FASIGQMFTRAKAIQDWFALSATHIAYTGHCVDWYTPLSLYVCQPYCKKAVKTIKTRLQG 548
Query: 913 LTLQRETEKVMV---KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
+ + + + V ++QR AFPPNFVHSLD +HMM+TAV C++AG+ FA VHDS+WTHA
Sbjct: 549 IEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMMLTAVHCQRAGINFASVHDSFWTHA 608
Query: 970 CDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL-----------------VFPPLP 1012
+D MNR+ RE+FV L+ PI ++L F ++ L F LP
Sbjct: 609 AHIDIMNRLCREQFVSLHTQPILQDLQTHFVDNYGGLKFMRPLKKKDHAPIHNATFEGLP 668
Query: 1013 ERGDFDLREVLGSPYFF 1029
E GDFD+ EVL S YFF
Sbjct: 669 EIGDFDVSEVLDSTYFF 685
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 18/268 (6%)
Query: 367 VKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKE 426
+K + D PW + G +I+ L Q+ I A+ + P F H+ +
Sbjct: 169 LKQEIDDLPWA--TKLLCGCTLIDFLIQSVKID--ANLFNAKSESLLPGFYHSYEFRERR 224
Query: 427 TKGGSKKYGVIECNPLVLKGLERTARHMVIPY--MPMLVPPVKWTGYDKGAHFFLPSYVM 484
G K + V+ C + KG + +P +PMLVPP W G P +M
Sbjct: 225 KIGVIKPHSVV-CK--LFKGYLADHGDIAMPTTSLPMLVPPRPWRDIRDGGFLIQPVQLM 281
Query: 485 R-THGAKQQRDTVKR--TPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD 541
R T D + R ++L V ++L+ LG W+ NNR+L + ++++ G
Sbjct: 282 RSTQEMDDNHDHMLRYKCDSRELSAVLDSLNYLGTCAWKTNNRILDLAIQVFNDQGDDTL 341
Query: 542 LVDRNDVPLP----EKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMK 597
+ VPL EK E EA++++ Q + R +K RE +S R KLSVA +
Sbjct: 342 AIPGPVVPLELEPLEKSVKEPEARMKQIQ-EHRRARKLAREHYSLRMTALYKLSVANHFR 400
Query: 598 DEEGFYYPHNVDFRGRAYPMHPYLNHLG 625
D F+ P N+DFRGR YP+ P+ H+G
Sbjct: 401 DRV-FWLPLNMDFRGRVYPIPPHCCHVG 427
>gi|398313069|emb|CCI88420.1| mitochondrial single-subunit RNA polymerase [Yersinia phage phiR8-01]
Length = 810
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 177/602 (29%), Positives = 276/602 (45%), Gaps = 56/602 (9%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRT----HGAKQQRDTVKRTPKKQLEPVFEALDTLG 515
P L+ P W G G F +R G Q + +K+ L V L+
Sbjct: 232 PCLIQPQDWDG--DGVGGFYGDLKIRAPRFFKGDSYQMEVMKKL-GCDLRVVLGMLNAHQ 288
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETED-----------EAQLRK 564
+ W+VN +L ++ + G D++ + P P +P D E + ++
Sbjct: 289 SVAWKVNPFILDLVKGMRLRGYETDDVMFTSAHPEPPRPLFLDLADKIGMTVPQEVEFKQ 348
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
W+ R+ + R + + A+ M + F++ D RGR YP+ LN
Sbjct: 349 WKQTKRDWHTKIRLVSRAEAKLSRVIYAAQDMLEYSEFFFVFQTDDRGRMYPVSGPLNPQ 408
Query: 625 GSDLCRGILEFAEGRTLG-KSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
GSD+ + +L A G + K W K++LA Y GVDKL+ + + +T ++ D+I +
Sbjct: 409 GSDMQKAMLHAAHGEPIADKVAEKWFKLNLATKY--GVDKLNIDQCVQWTIDNHDNIMRA 466
Query: 684 ADKPL--EGRRWWLKAEDPFQCLAVCINLTEALRSS-SPETFISHIPVHQDGSCNGLQHY 740
A+ PL + WW +A+ P Q +A+C E R P F++ I V DG+CNGLQ+Y
Sbjct: 467 AEDPLNRDAFYWWSEADKPLQFIALC---DEYRRYHLDPVNFVARIAVAMDGTCNGLQNY 523
Query: 741 AALGRDTLGAAAVNLVAR--EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKL--L 796
+AL RD +G A NL+ + P D+Y +A +Q + + AKL L
Sbjct: 524 SALLRDEVGGRATNLIGEDGDAPNDIYGDVAVAAEKRLQ---------YAEECAAKLAWL 574
Query: 797 LSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTAL 856
+R L K++VMT VYG T+ R I E+ A E+ E + + +A+ + +
Sbjct: 575 KEGFNRGLTKKSVMTQVYGSTFGTCRKSIVAYCVEK-ALFEDKERWEFADFASHLVWEGI 633
Query: 857 GEMFQAARGIMSWL---GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ-- 911
G++ + M WL CA + + + + W P G VVQ YRK V+ +
Sbjct: 634 GDVVVKGKEAMDWLRKVSGCA--MKTGDDYISWPAPSGFRVVQVYRKSEVKRVQAQVGNK 691
Query: 912 -ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA--GLTFAGVHDSYWTH 968
L L+ ET+ R R A PPNF+HS+D SHM +V GL +HD +
Sbjct: 692 ITLRLREETDLPDKIRHRNATPPNFIHSVDASHMAFVSVRMYLMFPGLFMHMIHDDFGAL 751
Query: 969 ACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV-FPPLPERGDFDLREVLGSPY 1027
+ +R +FV+++E LD F + V PP+PERG D+R VL SP
Sbjct: 752 PSKAQALYDTIRSEFVQMHE----NYSLDCFVSEYGHRVKLPPVPERGSLDIRCVLTSPN 807
Query: 1028 FF 1029
FF
Sbjct: 808 FF 809
>gi|374531627|ref|YP_005098186.1| T3/T7-like RNA polymerase [Pseudomonas phage Bf7]
gi|372001329|gb|AEX65868.1| T3/T7-like RNA polymerase [Pseudomonas phage Bf7]
Length = 803
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 188/649 (28%), Positives = 290/649 (44%), Gaps = 71/649 (10%)
Query: 429 GGSKKYGVIECNPLVLKGLERTARHMVI-------------------PY-MPMLVPPVKW 468
G S G+IE L LKG +T +H+ + P+ +P + PP W
Sbjct: 177 GASLDIGLIETFDLRLKG--KTTKHLRLHPDLLALVEQIKGFVAGASPFNLPCVEPPKPW 234
Query: 469 -TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLS 527
T D G H + MR R T + V +AL+ + + W VN R+L
Sbjct: 235 VTPTDGGWH----TMAMRRTLPCMVRGQATATVEDVGPRVLKALNKVQSVAWEVNERILE 290
Query: 528 VLDRIWSCGGRLADLVDRNDVPLPEKP--------------ETEDEAQLRKWQWKVRNVK 573
V + LV +P+KP + AQ +W+ + R
Sbjct: 291 VAEFAREHFDVQDVLVSDKRGGMPDKPLFMQADPVLKIVDMNEFELAQFTEWRQEAREWH 350
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
+ + R + + VA K K + ++ ++VD+R R Y L+ G+DL + ++
Sbjct: 351 TQQKVRGAHAGSTNEAIRVANKYKGKP-LWFVYSVDYRSRFYASGQGLSPQGNDLSKALI 409
Query: 634 EFAEGRTLGKS-GLHWLKIHLANLYA-GGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
FA + S GL W ++ AN +A +DK + R + ++ D I AD P+ R
Sbjct: 410 HFARSAPIRTSAGLFWFRVAGANKWAVNKLDKQPLDVRAQWVIDNADFICRIADDPISHR 469
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
W A+ PFQ LA C +R+ PE+F + IP+ QDGSCNGLQH++A+ RD +G
Sbjct: 470 EW-TDADVPFQFLAWCFEYAAWVRN--PESFRTRIPLGQDGSCNGLQHFSAMLRDRVGGR 526
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
A NL+ D+Y +A I+Q D + + ++ R LVK++VMT
Sbjct: 527 ATNLIPDRVQHDIYGLVATATAGIVQSDIDECD------IAKRWKSHELSRSLVKRSVMT 580
Query: 812 SVYGVTYIGARDQIKRRLKERG-AP-MEEAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
YG T RD I + ++G AP ++ E A+ + + +G++ R M W
Sbjct: 581 LPYGSTRHSCRDFIMKEYMDKGSAPEFDKRENEPAARWLSYRVWDGIGKVVVKGRQAMEW 640
Query: 870 LGECAKIIASENQP-VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV---- 924
L + I+ + N P + W P G V Q Y R ++ S L+ +R V
Sbjct: 641 LQAASAIMCAGNAPHIEWRNPAGFLVRQRYH--AREMLRVSCHSLSGKRIRINVQTFKDE 698
Query: 925 ---KRQRTAFPPNFVHSLDGSHM-MMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILR 980
+R R PNFVHS D +H+ T + G A VHD Y A +V +++RILR
Sbjct: 699 GDPRRHRNGIAPNFVHSCDAAHLTFFTNDWEDEDGGDLALVHDDYGALADEVPKLHRILR 758
Query: 981 EKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
FV++Y ++ + L + L P LPE GD +L +V S YFF
Sbjct: 759 RSFVDMY---LYHDPLKALAAQVEGL--PELPEAGDLNLEDVTRSVYFF 802
>gi|224105535|ref|XP_002333804.1| predicted protein [Populus trichocarpa]
gi|222838549|gb|EEE76914.1| predicted protein [Populus trichocarpa]
Length = 177
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 133/215 (61%), Gaps = 51/215 (23%)
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPA 402
EQE LRKKVTDLIKKQKLPAVR+IVK +DD KP DARAKVGSR+IELL QTAYIQ P
Sbjct: 3 EQENLRKKVTDLIKKQKLPAVRKIVKWKDDSKPCNADARAKVGSRLIELLLQTAYIQPPC 62
Query: 403 DQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPML 462
DQLAD+P + PAF H R VS K G KKY VI+C+PLVLKGLE+T
Sbjct: 63 DQLADSPSEPRPAFVHTFRNVSYVNKKGVKKYVVIQCDPLVLKGLEKTVF---------- 112
Query: 463 VPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVN 522
+E + ALDTLGNT+WRVN
Sbjct: 113 -----------------------------------------IENMVNALDTLGNTRWRVN 131
Query: 523 NRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETE 557
RVLSV+DRIWS GG LADLVD +DVPLPE+PETE
Sbjct: 132 KRVLSVVDRIWSNGGCLADLVDHSDVPLPERPETE 166
>gi|316934324|ref|YP_004109306.1| DNA-directed RNA polymerase [Rhodopseudomonas palustris DX-1]
gi|315602038|gb|ADU44573.1| DNA-directed RNA polymerase [Rhodopseudomonas palustris DX-1]
Length = 842
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 196/726 (26%), Positives = 312/726 (42%), Gaps = 91/726 (12%)
Query: 357 KQKLPAVRRIVK--GQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 414
KQ+L A R I K G W R VG I++L + A PD+F
Sbjct: 154 KQRLQAARSIAKKEGFSQSAQWTPTQRIAVGHFAIDILLR-------------ALPDLFE 200
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
A + V + T+ + N L+ R + ++P PPV W+ + G
Sbjct: 201 APIEGDKRVFRVTE---------DANKAAEAALQEHIRRYPV-FLPSEEPPVPWSDFKGG 250
Query: 475 AHFFLPSYVMRTHGAKQQRDTV----KRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
+ + T + ++TV + ++P +A+ + WR+N +L+V+
Sbjct: 251 GPVDPAARKLVTLVRTRHKETVAAVRRAIADGSMQPALDAVSAVQAVPWRINTAILNVMR 310
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNV-----KKENRERHSQRCD 585
G + L +++P+P P ED L + K+ V K N R
Sbjct: 311 ECRRRGIDVEGLPPLHNLPMP--PPVEDYDSLSDEEKKLVRVERAAIKTANNSFVVDRMR 368
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
E + A + E FY PHN+D+RGR YP+ + N D R + F + + +G+ G
Sbjct: 369 FEGDMETAEALSRLEQFYIPHNLDWRGREYPLCTF-NFQRGDYVRSLFLFKDAKPIGEEG 427
Query: 646 LHWLKIHLANLYA-GGVDKLSHEGRLAFTENHLDDIFDSADK------PL--EGRRWWLK 696
+ WLK+HLAN G V K + + R+ +T+++L+ I D A K PL E +W +
Sbjct: 428 IEWLKVHLANCGDFGKVSKKTFDKRIKWTDDNLERIKDCATKDWDCGGPLTPEALSFWTQ 487
Query: 697 AEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV 756
A+ PF LA CI LT AL + P ++ +P DGSC+G QH A R + A VNL+
Sbjct: 488 ADKPFLFLAACIELTNAL-AYGP-GYVCGLPCSWDGSCSGAQHLCAATR-SEDAWKVNLI 544
Query: 757 AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVD-RKLVKQTVMTSVYG 815
++ D+Y+ I+ A++ A D + + +L D RK+ K+ MT+ YG
Sbjct: 545 GNDEVHDLYT--------IVGNAAKQSMARAKDPMVSTILAYDGDWRKVFKRNTMTTFYG 596
Query: 816 VTYIGARDQ--------------IKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQ 861
G Q K+R K + + AA GE+
Sbjct: 597 SKGFGMAQQHMDDLMEPLSREVMQKKRAKHPFGQTRKEHHAASRLLAAHAAAAIKGEIPL 656
Query: 862 AARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEK 921
A + M ++ + + ++A E +P+ WTTP+GLP Y V + ++R
Sbjct: 657 AIKA-MEFIQKLSAMMAHEGKPLEWTTPIGLPWSNRYHDPVTERVNLWMHDNGVRRPFRP 715
Query: 922 VMVKRQRTAF---------PPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACD 971
V+ + PNFVH+ D +H++ T A R G+T FA VHDS+ +
Sbjct: 716 VVADGYKKTINKNHSVNGSAPNFVHACDAAHLLRTVNAARAEGITQFALVHDSFGSIPSH 775
Query: 972 VDEMNRILREKFVELYE-----MPIFENL---LDSFQKSFPKLVFPPLPERGDFDLREVL 1023
+I+RE+FV +YE + E LD LV G +++EVL
Sbjct: 776 AARFRQIIREEFVRMYEEHDVLTEVLEQAKCDLDEHNDKLSALVDMRADLTGKLNIKEVL 835
Query: 1024 GSPYFF 1029
+ Y F
Sbjct: 836 SAEYAF 841
>gi|229604949|ref|YP_002875649.1| putative RNA polymerase [Vibrio phage VP93]
gi|227976994|gb|ACP44096.1| putative RNA polymerase [Vibrio phage VP93]
Length = 816
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 222/896 (24%), Positives = 377/896 (42%), Gaps = 157/896 (17%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRM 254
RQ +IE +A R+ ++D E A L ++ L + D ++ + +
Sbjct: 16 RQERIEETFKTEAIERSRKAVLDALENGRATELTPVQRLLNAAY----DGVSARIDELKA 71
Query: 255 AKHK---VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEV 311
+K + Y Y + +D++ V+T++ L+ + + E G + + +G +++ E+
Sbjct: 72 SKTRGVGAKYRGYIRLVSSDVLTVMTLNTLLNNIAST-ELGMSSIQSLGTSLGRSVQSEI 130
Query: 312 --------------RIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKK 357
R++++L++ K ++++ +N
Sbjct: 131 IAQNAEVVAPAYMNRVYEYLKEHKTRSQSHILRTFRAASAN------------------- 171
Query: 358 QKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTA---YIQSPADQLADAPPDIFP 414
VK + D PW VG +++ + T ++Q P L P
Sbjct: 172 ---------VKLETD--PWDNTTCFNVGRLLLQCVHDTGIFEWVQGPKGLLYAEP----- 215
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
++E +G V + A MV Y PM+VPPV+ G
Sbjct: 216 ---------AEELQG-------------VFSDVLEHADTMV-HYPPMIVPPVRHEDIYNG 252
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVF-------EALDTLGNTKWRVNNRVLS 527
+ + + R H + +KR+ +++ F +AL+ + VN +
Sbjct: 253 GYL---TDLSRRHTYSNRH--IKRSRLREVNEAFKQANGIRQALNKAQEVPYVVNQSIYD 307
Query: 528 VLDRIWSCGGRLADLVDRNDVPLP---EKPE--------------TEDEAQLRKWQWKVR 570
++ + + G DV +P +KP+ +D+ W+ ++R
Sbjct: 308 LVLQAKATGF---------DVGIPSHHQKPQPKFHLHGTDKADWSEDDQEAFEVWKTQMR 358
Query: 571 NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
+ R+R SQ + + L + R+ DE+ Y+P VD+R R Y +LN GSD+ +
Sbjct: 359 QWYTKERKRVSQIRQLAITLDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQK 417
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
+L + LGK GL WLK H+A + G DK E R +TE +D I + PL
Sbjct: 418 ALLLLGRKKPLGKRGLFWLKSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNN 475
Query: 691 RRWWLKAEDPFQC-LAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
+ K D F C LA I L EAL S PE + S+I V D + +G QH++A+ RD +G
Sbjct: 476 EDF--KDADEFWCMLAASIQLIEALDSPDPEKYESNIAVALDATNSGGQHFSAMLRDPIG 533
Query: 750 AAAVNLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQ 807
NL AD+Y + R I + A RDP A L+ + R + K+
Sbjct: 534 GKLTNLFWDGNLTKADLYMDVKQRTDSKI-KVALRDPETIVQA--HYWTLNPITRSMTKR 590
Query: 808 TVMTSVYGVTYIGARDQIKRRLKERGAP-MEEAELFGASCYAAKVTLTALGEMFQAARGI 866
MT Y T D I + G +E LF + + + ++ E AA
Sbjct: 591 PTMTYFYSATLRSCTDYIFLGAADEGYEGTDEYTLFKLCSFVSPLMRDSINEAMPAAARG 650
Query: 867 MSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL------QILTLQRETE 920
M +L + + E+ ++W T LG V+ Y RH + + Q++ + E
Sbjct: 651 MDYLKAVCQRVPMEHH-LQWKTVLGGLVINRY--CNRHETRVKVRSMGINQVVLYNFDYE 707
Query: 921 KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG----VHDSYWTHACDVDEMN 976
+ ++ + PNF+H D SH+MMT L F G +HDS THACDVD+++
Sbjct: 708 RNHRQKAVSGISPNFIHQGDSSHLMMTI-------LNFDGDIIPIHDSVATHACDVDDLH 760
Query: 977 RILREKFVELY---EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
R+LRE+FV LY + P+ E + D+ ++ L +P G +L V SP+FF
Sbjct: 761 RVLREQFVILYTEHQNPL-EVIRDAALEAGADLEGIEMPPMGTLNLELVKDSPFFF 815
>gi|147770014|emb|CAN63269.1| hypothetical protein VITISV_026360 [Vitis vinifera]
Length = 798
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 102/118 (86%)
Query: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
ILEF EGR LGKS LHWL IHL NLYAGG+DKLS+EG +AF ENHL+DIFDS D+PLEG
Sbjct: 674 SILEFVEGRLLGKSSLHWLNIHLENLYAGGLDKLSYEGWVAFIENHLEDIFDSTDRPLEG 733
Query: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
R WL AEDPFQCLA CINL+EALRSSSPET ISH+PVHQDGSCN LQH AALGRDT+
Sbjct: 734 RHGWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNDLQHSAALGRDTV 791
>gi|357516855|ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522738|gb|AET03192.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 259
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/271 (47%), Positives = 170/271 (62%), Gaps = 18/271 (6%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKV---KFVCLDMVPRGIHEVGSGRI 103
MW +AK+A S P S++ + L S +K+ F V E GR
Sbjct: 1 MWSKLAKRASSRRFILP-SQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRS 59
Query: 104 GEILNHEDYMGRTSFGVLKNDNFWCPRGYATVA-EAVSSTDVEEDVSIVEEI-QELLQEM 161
+ + SF + ++F R Y +VA EA+ STD E+D S EE+ Q+LL +M
Sbjct: 60 NFSFSEHPF----SFSSISLNHF---RTYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQM 112
Query: 162 KKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQ 221
EE+++ + + S KY+ML+ RQ+KIETEAWE+AA EY+ELL DM EQ
Sbjct: 113 VIEEEKKN----PQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQ 168
Query: 222 KLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
KLAPNLPYMKSLFLGWFEPL++AIA +QE C+ K ++++APYF++LP DMMAVITMHKL
Sbjct: 169 KLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKL 228
Query: 282 MGLLMTGGEH-GRARVVQAACIIGDAIEQEV 311
MGLLMT G ARV+QAAC IG+AIE EV
Sbjct: 229 MGLLMTNSNGVGSARVIQAACQIGEAIEHEV 259
>gi|312062870|gb|ADQ12732.1| putative RNA polymerase [Acinetobacter phage phiAB1]
Length = 805
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 170/618 (27%), Positives = 291/618 (47%), Gaps = 69/618 (11%)
Query: 450 TARHMVIPYMPMLVPPVKWTGYDKGAHFF------LPSYVMRTHGAKQQRDTVKRTPKKQ 503
+A V+ Y PML+ P+ W G G + P +R K+ + V
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIR-FIKKEHKHWVIDNLNNG 276
Query: 504 LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETED----E 559
E V A++ + +R+N +L++L + + + L P P P T+D E
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPKPAFPFTDDWLKSE 336
Query: 560 A------QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
A Q + W+ + + + +R ++ I ++ K +DEE Y+P +D+RGR
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELVKYQDEERLYFPTFIDWRGR 396
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y +N +D +G LEFAEG+ LGK+GL WLKIH+AN G DK + + +
Sbjct: 397 LY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDLKEKWC 453
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDP---FQCLAVCINLTEALRSSSPETFISHIPVHQ 730
+++ + I + + P + ++A +P F L + L AL +PE++I H+PV
Sbjct: 454 DDNWNYIQNFINNPFD-----VEAPEPDTAFTLLQAGLALQSALELETPESYICHVPVAM 508
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
D +C+GLQH +AL RD +G NL+ ++ +D+Y +A I +++ + A P
Sbjct: 509 DATCSGLQHLSALTRDEVGGLYTNLLDNGEDQKSDIYMRVAH-----IADESKLELADSP 563
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYA 848
A+R + + R + K+ VMT VYG + + + E G M+E +L G + +
Sbjct: 564 -AVRQYWVDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQLDGKTVFT 620
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKII--------ASENQPVRWTTPLGLPVVQPYRK 900
+G+ + +G+ + + A+++ ++ +RW +P+G+PVV
Sbjct: 621 YNRLAKPVGKALR--KGVEDTVPKSAEMMNYLQNVVRKNKADAMRWFSPVGVPVVNWAE- 677
Query: 901 LGRHTVKTSLQILTLQR-----ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
G T +++ + + R + R PNFVHS+D SH+ +T
Sbjct: 678 -GMVTKLVAIRSMGISRIAYSYPDNQYNTLRAANGIVPNFVHSMDSSHLCLTI------- 729
Query: 956 LTFAG----VHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPL 1011
L F G +HDS+ TH DV+ M+ LR+ F+E+Y E+ L F + PPL
Sbjct: 730 LDFDGQVLPIHDSFATHPSDVEAMHVSLRKTFIEMYTQFSIEDFL-KFNNIDLEEYTPPL 788
Query: 1012 PERGDFDLREVLGSPYFF 1029
G+ +L E+ S Y F
Sbjct: 789 --TGNLELSEISKSRYMF 804
>gi|266634771|gb|ACY78114.1| putative DNA-dependent RNA polymerase [Acinetobacter phage phiAB1]
Length = 804
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 170/618 (27%), Positives = 291/618 (47%), Gaps = 69/618 (11%)
Query: 450 TARHMVIPYMPMLVPPVKWTGYDKGAHFF------LPSYVMRTHGAKQQRDTVKRTPKKQ 503
+A V+ Y PML+ P+ W G G + P +R K+ + V
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIR-FIKKEHKHWVIDNLNNG 276
Query: 504 LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETED----E 559
E V A++ + +R+N +L++L + + + L P P P T+D E
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPKPAFPFTDDWLKSE 336
Query: 560 A------QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
A Q + W+ + + + +R ++ I ++ K +DEE Y+P +D+RGR
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELVKYQDEERLYFPTFIDWRGR 396
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y +N +D +G LEFAEG+ LGK+GL WLKIH+AN G DK + + +
Sbjct: 397 LY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDLKEKWC 453
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDP---FQCLAVCINLTEALRSSSPETFISHIPVHQ 730
+++ + I + + P + ++A +P F L + L AL +PE++I H+PV
Sbjct: 454 DDNWNYIQNFINNPFD-----VEAPEPDTAFTLLQAGLALQSALELETPESYICHVPVAM 508
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
D +C+GLQH +AL RD +G NL+ ++ +D+Y +A I +++ + A P
Sbjct: 509 DATCSGLQHLSALTRDEVGGLYTNLLDNGEDQKSDIYMRVAH-----IADESKLELADSP 563
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYA 848
A+R + + R + K+ VMT VYG + + + E G M+E +L G + +
Sbjct: 564 -AVRQYWVDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQLDGKTVFT 620
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKII--------ASENQPVRWTTPLGLPVVQPYRK 900
+G+ + +G+ + + A+++ ++ +RW +P+G+PVV
Sbjct: 621 YNRLAKPVGKALR--KGVEDTVPKSAEMMNYLQNVVRKNKADAMRWFSPVGVPVVNWAE- 677
Query: 901 LGRHTVKTSLQILTLQR-----ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
G T +++ + + R + R PNFVHS+D SH+ +T
Sbjct: 678 -GMVTKLVAIRSMGISRIAYSYPDNQYNTLRAANGIVPNFVHSMDSSHLCLTI------- 729
Query: 956 LTFAG----VHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPL 1011
L F G +HDS+ TH DV+ M+ LR+ F+E+Y E+ L F + PPL
Sbjct: 730 LDFDGQVLPIHDSFATHPSDVEAMHVSLRKTFIEMYTQFSIEDFL-KFNNIDLEEYTPPL 788
Query: 1012 PERGDFDLREVLGSPYFF 1029
G+ +L E+ S Y F
Sbjct: 789 --TGNLELSEISKSRYMF 804
>gi|441463031|gb|AGC35317.1| putative RNA polymerase [Acinetobacter phage AB3]
Length = 805
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 167/616 (27%), Positives = 279/616 (45%), Gaps = 65/616 (10%)
Query: 450 TARHMVIPYMPMLVPPVKWTGYDKGAHFF------LPSYVMRTHGAKQQRDTVKRTPKKQ 503
+A V+ Y PML+ P+ W G G + P +R K+ + V
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIR-FIKKEHKQWVIDKLNNG 276
Query: 504 LEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETED----E 559
E V A++ + +R+N +L++L + + + L P P P TED E
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPQPAFPFTEDWLKSE 336
Query: 560 A------QLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
A Q + W+ + + + +R ++ I ++ K +DEE Y+P +D+RGR
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELVKYQDEERLYFPTFIDWRGR 396
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
Y +N +D +G LEFAEG+ LGK+GL WLKIH+AN G DK + + +
Sbjct: 397 LY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDLKEKWC 453
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDP---FQCLAVCINLTEALRSSSPETFISHIPVHQ 730
+++ + I + + P + + A +P F L + L AL P T++ H+PV
Sbjct: 454 DDNWNYIKNFINNPFD-----VDAPEPDTAFTLLQAGLALQSALALPDPTTYVCHVPVAM 508
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788
D +C+GLQH +AL RD +G NL+ E+ +D+Y +A DA +
Sbjct: 509 DATCSGLQHLSALTRDEVGGLYTNLLDNGEEQKSDIYMRVAHVA------DASKLELADS 562
Query: 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYA 848
A+R + R + K+ VMT VYG + + + E G M+E +L G + +
Sbjct: 563 PAVRQYWSDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQLDGKTVFT 620
Query: 849 AKVTLTALGEMFQAARGIMSWLGECAKII--------ASENQPVRWTTPLGLPVVQPYRK 900
+G+ + +G+ + + A+++ ++ +RW +P+G+PVV
Sbjct: 621 YNRLAKPVGKALR--KGVEDTVPKSAEMMNYLQNVVRKNKADAMRWFSPVGVPVVNWAEG 678
Query: 901 LGRHTV---KTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+ TV + + + + R PNFVHS+D SH+ +T L
Sbjct: 679 MVTKTVAIRSMGINNIAYRYPDNQYNTVRAANGIVPNFVHSMDSSHLCLTI-------LD 731
Query: 958 FAG----VHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPE 1013
F G +HDS+ TH DV+ M+ LR+ F+E+Y E+ L + LP
Sbjct: 732 FDGQVLPIHDSFATHPSDVEAMHISLRKTFIEMYTQFSIEDFLKFNNIDLEEYT---LPL 788
Query: 1014 RGDFDLREVLGSPYFF 1029
G+ +L E+ S Y F
Sbjct: 789 TGNLELSEISKSRYMF 804
>gi|71654288|ref|XP_815767.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70880845|gb|EAN93916.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1022
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 177/346 (51%), Gaps = 41/346 (11%)
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
+K + LPS ++ G+ Q + + P + +ALD + WR++ +L V +
Sbjct: 684 EKSVYNVLPSVAVK--GSTNQAMIISQAP------MMKALDAISRVPWRISKYMLHVQEA 735
Query: 532 IWSCGGRLADL-----------VDRNDVPLPEKP-------------------ETEDEAQ 561
I G + R D+ E + Q
Sbjct: 736 IVREGYGFGKIRPAFYPLHYCAKSRGDISYDVADNADAAAAAAADAYDDGDDCEVYNLQQ 795
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
R++ + K E+ S R L AR + Y+P+++DFRGR YP+ L
Sbjct: 796 RREYDTQQDEDWKSLSEQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRL 855
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
NH GSD R +LE+AE + LG++GL+WLK+HLAN G+ KLS + R+ + H++D+
Sbjct: 856 NHTGSDPFRALLEYAEPKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVV 913
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGSCNGLQHY 740
SA+ PL G +WW +A +P QCL C LT+AL+ S E ++S IPV DGS NGLQHY
Sbjct: 914 RSAESPLHGDKWWQEAAEPMQCLMACKELTDALKCSQGAENYLSRIPVAVDGSYNGLQHY 973
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV 786
+A+GRD GA VNLV E+PAD Y+GI ++ I DA++D V
Sbjct: 974 SAIGRDAFGAQLVNLVPSERPADAYTGILKEMMRSIMADAEKDNPV 1019
>gi|313244255|emb|CBY15079.1| unnamed protein product [Oikopleura dioica]
Length = 410
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 198/413 (47%), Gaps = 58/413 (14%)
Query: 670 LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
L + + I DS PL G RWW E PFQ LA C+ + +A + P + + I VH
Sbjct: 2 LHYAWQNFHAICDSGRDPLTGYRWWETCEKPFQVLAACMEIWKATQLDDPSQYETKISVH 61
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPD 789
DG+CNG QHY+A+GRDT+GA N++ E+P+D Y I L ++ D + A F
Sbjct: 62 MDGTCNGFQHYSAMGRDTIGAIFTNVLPTERPSDFYQSILDSALKLMDEDIAAEGANFEK 121
Query: 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAA 849
AK+ V R +VK+ VM YG++ GA D + L + + A+L + Y
Sbjct: 122 LRVAKIARKVVTRSIVKRPVMAIPYGLSVRGAVDICRNNLHGK---ISSADLTPVAQYII 178
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQ-PYRKLGRHTVK 907
+ +++ F+ + I WL + +S+ P+ + +P+G PV Q Y+ + + K
Sbjct: 179 RNLFSSINSTFRNSMAIKQWLAGYNRYCSSKLGVPIEYISPMGFPVSQIGYKSMLQR--K 236
Query: 908 TSLQILTLQRETEKVMVKRQRT--AFP------------PNFVHSLDGSHMMMTAVACRK 953
TS+++L + ++ +R FP PNFVH++D SH++M+ K
Sbjct: 237 TSMEVLVAAVDENRIKNERDNCYGVFPAADGQRSGNSLSPNFVHAIDASHLLMSYTMFAK 296
Query: 954 AG-------LTFAGVHDSYWTHACDVDEMNRILREKFVELYEM--PI------------- 991
A F +HDS+W H VD +N LRE F+++YE PI
Sbjct: 297 AAKEERGDEADFGSIHDSFWCHPSQVDLLNENLREAFIDMYEHFDPITTFAEHMENWVIP 356
Query: 992 -------FENLLDSFQKSFPKL--------VFPPLPERGDFDLREVLGSPYFF 1029
FENL ++ KL ++ PE+G+ D+++V S YFF
Sbjct: 357 ERFWPKRFENLPENVTTLENKLSHLERRNALYYNRPEKGEMDIQKVRDSKYFF 409
>gi|429864712|gb|AGA17876.1| RNA polymerase [Synechococcus phage P60]
Length = 780
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 194/748 (25%), Positives = 323/748 (43%), Gaps = 96/748 (12%)
Query: 298 QAACIIGDAIEQEVRIHKFLEKTKK--KNETKNKEDEEGDESNTVTTEQEKLRKKVTDLI 355
+ A IG AIE E+++ + ++ K +N T G + + V +L
Sbjct: 112 EVAASIGSAIEVELKLQWYQQQDKDLFRNVTNGFHHSTG----------TRQKATVYNL- 160
Query: 356 KKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQT-AYIQSPADQLADAPPDIFP 414
R K +K WG+ KVGS + +T+T +I ++ P
Sbjct: 161 ---------RFNKAGIQWKGWGRTVHFKVGSWALRSITETTGWIIKETIKM--------P 203
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
+ S+E G + L + A + PM+ PP WT D+G
Sbjct: 204 RSQKCILRFSREFIG-------------LRDALMQRALELSFCLWPMVCPPNDWT--DEG 248
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+L + T ++ K+ PV E L+ L +R+N +L+V + +
Sbjct: 249 RGGYLTEEIRGTAPMIRKVGKPIGDSKQGTIPV-EFLNNLQRQSYRINAAILAVANWCYD 307
Query: 535 CGGRLADLVDRNDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+ + +D P P+ E E + ++W+ R++ N + +
Sbjct: 308 NSRTVGKFI--HDQPRERLDSFNGDPKAEPE-RFKEWKRMQRSIDDFNAQLFQRNWRATE 364
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+ VA + D+E F+ P + D+RGR YP + LN G+D + +L FAE G+ +W
Sbjct: 365 TMFVANQY-DDEVFWIPWSFDYRGRVYPQNTQLNPQGTDFDKSLLLFAEE---GEVDEYW 420
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
L H+ Y G DKLSH R+A+T+ + + I A+ P+ W A +P+ LA CI
Sbjct: 421 LAWHVCTTY--GNDKLSHNDRVAWTQENHELITIIAEDPIGAISLWEGAGEPWMFLAACI 478
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYS 766
+ + + +T S +P+ D +C+GLQH +++ RD + A VN++ ++ P+D Y
Sbjct: 479 EYHACVITGAKQT--SGLPIGIDATCSGLQHLSSMTRDAVAAKQVNVIRGDQDGPSDGYK 536
Query: 767 GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826
+A + I+ D ++ P ++RK+ K+TVMT YGV+ AR I+
Sbjct: 537 TVAEAAIKYIE-----DESIHP----------YMNRKITKRTVMTVPYGVSRDSARAYIR 581
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECA-KIIASENQPVR 885
L + G + G A V A+ E+F +M+WL + A ++ + + +
Sbjct: 582 EALHDAGFDLSIKGRLGQVTDA--VYRKAVPEVFAGPVDVMNWLQQTAMDLLDAGAEQIE 639
Query: 886 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV----KRQRTAFPPNFVHSLDG 941
WTTP G VVQ RK +KT+L Q +R + A PN VHSLD
Sbjct: 640 WTTPSGFRVVQDIRKPRTKLIKTTLMGSVQQIRVADGFAGPDRQRHKGAIAPNLVHSLDA 699
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
S + + K F +HD +CD++EM +R E+Y+ E+ +
Sbjct: 700 SLLHLMFYEYDKP---FTVIHDCILGRSCDMNEMMAGIRLHHAEIYKGKPLEDWAEQQDV 756
Query: 1002 SFPKLVFPPLPERGDFDLREVLGSPYFF 1029
P + + DL V SPYFF
Sbjct: 757 EIPDGLI-----KDTLDLDLVNESPYFF 779
>gi|268570220|ref|XP_002640721.1| Hypothetical protein CBG19789 [Caenorhabditis briggsae]
Length = 1030
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/444 (31%), Positives = 217/444 (48%), Gaps = 58/444 (13%)
Query: 459 MPMLVPPVKW----TG---YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEAL 511
+PM VPP W TG Y G + ++ + ++P Q PVF+AL
Sbjct: 519 LPMTVPPRPWIDRGTGGPLYTAGQDIIRNMFEFKSVRLNDEMRQRIQSPA-QGRPVFDAL 577
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDRNDVPL-------PE--------KP 554
+ LG+T W +N +L L ++ G L+++ +P+ P+ K
Sbjct: 578 NQLGSTPWVINESMLDTLKTVFGQSGCKESEPLLEKLGIPMRHDTFDVPDFVREFGNVKK 637
Query: 555 ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRA 614
E D + R++ K K E +S C ++ ++ +A + + ++PHN+DFRGR
Sbjct: 638 EDVDVEKFRRYAKKKAEAVKMRNESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGRV 696
Query: 615 YPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE 674
YP+ PYL+H+G D+ R IL+FA+ + LG G WLK+H NL G + + S R+ E
Sbjct: 697 YPLSPYLSHMGDDVNRCILKFAKSQPLGSHGFDWLKLHCVNL-TGTMKRASVADRMVEAE 755
Query: 675 NHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR-SSSPETFISHIPVHQDGS 733
+ I DSA PL G +WW+ +++P+Q LA C+ + A++ S +F S +PVHQDGS
Sbjct: 756 RLIPSILDSARNPLNGEKWWMSSDEPWQTLAACVEIENAMKYGSDVASFPSQLPVHQDGS 815
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD G V + I AR L A++ A DA +
Sbjct: 816 CNGLQHYAALGRDNEGG-------------VQAAIFARYL------ARKTFASLNDAFTS 856
Query: 794 KLLLSQVDRKLVK--QTVMTSVYGVTYIG-ARDQIKRRLKERGA-------PMEEAELFG 843
+ L R + K +M +V VT +G Q RL ER + PM++ + F
Sbjct: 857 SMALKDWFRLIAKGASDLMKTVEWVTPLGLPVVQPYCRLLERKSKLVLVPIPMKQVDAFP 916
Query: 844 AS-CYAAKVTLTALGEMFQAARGI 866
+ ++ T L + A RGI
Sbjct: 917 PNFVHSLDSTHMMLTSLNCANRGI 940
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 32/203 (15%)
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
Y A+ T +L + F ++ + W AK + + V W TPLGLPVVQPY +L
Sbjct: 841 YLARKTFASLNDAFTSSMALKDWFRLIAKGASDLMKTVEWVTPLGLPVVQPYCRL----- 895
Query: 907 KTSLQILTLQRETEKVMV---KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHD 963
L+R+++ V+V +Q AFPPNFVHSLD +HMM+T++ C G+TFA VHD
Sbjct: 896 --------LERKSKLVLVPIPMKQVDAFPPNFVHSLDSTHMMLTSLNCANRGITFAAVHD 947
Query: 964 SYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF--PKL--VFPPLP------- 1012
+WTHA VDEMN+I R++FV L+ PI E + F+ ++ P++ + PP
Sbjct: 948 CFWTHANSVDEMNQICRQQFVSLHSQPIVEQCSEWFKTTYLTPRIQKILPPSEVDRFADI 1007
Query: 1013 -----ERGDFDLREVLGSPYFFN 1030
++G+ D+ +V S YFF+
Sbjct: 1008 FTVKVKQGELDIEKVKDSVYFFS 1030
>gi|148724458|ref|YP_001285424.1| RNA polymerase [Cyanophage Syn5]
gi|145588103|gb|ABP87922.1| RNA polymerase [Synechococcus phage Syn5]
Length = 779
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 208/854 (24%), Positives = 355/854 (41%), Gaps = 94/854 (11%)
Query: 192 LKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQER 251
L RQ++ ETEA E A ++ + E+ A + + + +P+ I +
Sbjct: 5 LIARQLQRETEAAELARKRLQDARREANERSYASSNIESRKAIATFLDPIAQRIGERLFT 64
Query: 252 CRMAKHKVAYAPYFDQLP-ADM--MAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIE 308
R V A + L AD +A+ITM + +L G+ ++ Q IG I+
Sbjct: 65 LRRGTGAVDAAEVYKHLKNADHHHLALITMKTALDVL---GKDPEPQIQQLTTAIGRNIQ 121
Query: 309 QEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK 368
E+R+ + E+ + + ++ G + R+K T + KL R +
Sbjct: 122 LELRLTYYAEENPELYKQASRFFHAGTGT----------RQKATVI----KLKFNREGI- 166
Query: 369 GQDDFKPWGQDARAKVGSRVIELLTQ-TAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
++ W + KVG ++ + T +I+ D+ T
Sbjct: 167 ---EWDQWSRVTCHKVGQWLMLAMADVTGWIERATDR----------------------T 201
Query: 428 KGGSKKYGVIECNPLVLK---GLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVM 484
GG K I + L+ + A + PML PP++W+ G +L +
Sbjct: 202 SGGRKTKTRICYSREFLQHRDTILAAAEQLAFCQWPMLCPPIEWSNDHNGG--YLSEQIR 259
Query: 485 RTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD 544
R + R T +KQ + L+ L ++VN VL + + + + +
Sbjct: 260 RVNPLI--RKTGPLGTRKQGDIPLAMLNNLQGQAYKVNPEVLDIANHCYESNVTVGKFIR 317
Query: 545 RNDVPLPEKP-ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
+P+P P E E QL ++ R + N + + + VARK DE F+
Sbjct: 318 HAPLPVPPSPGEDCTEDQLTAYKRARREAEDFNAQISQKNWRTTEVMYVARKYADEASFW 377
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
P + D+RGR Y ++ LN G+D + +L FAE G WL H+A Y G+DK
Sbjct: 378 MPASFDYRGRVYFLNTALNPQGTDFDKALLYFAEE---GPVNEWWLSFHVATTY--GLDK 432
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFI 723
+ R+ + ++ + I A P+ W A++P+ LA C+ + + +T
Sbjct: 433 ETMVNRVQWARDNHELIDRIASDPVRHTE-WHDADEPWCFLAACLEYKACVIDGTKQT-- 489
Query: 724 SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRD 783
S +P+ D +C+GLQH AA+ R AA VN+ +KPAD Y +A L + ++
Sbjct: 490 SGLPIGIDATCSGLQHLAAMTRCGRTAALVNVTPTDKPADAYKTVAQASLKHLPKEQH-- 547
Query: 784 PAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG 843
+ RK+ K+ VM + YGVT AR I+ +L + G +
Sbjct: 548 --------------EWITRKVTKRPVMCTPYGVTMSSARGYIRDQLVKDGHKEDLRSPGV 593
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECA-KIIASENQPVRWTTPLGLPVVQPYRKLG 902
+ + A+ E+ +M+WL A +II + + WTTP G VVQ +K
Sbjct: 594 LNGIVKAIFNEAIPEVIPGPVQVMAWLKRSAGQIIDRGDSTITWTTPSGFEVVQDLKKSK 653
Query: 903 RHTVKT------SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
+ VKT +++ T++ ++A PN VHS D S + +T K
Sbjct: 654 TYEVKTRIMGGARIKLQVGDGFTDEPDRDHHKSALAPNVVHSNDASLLHLTFAFWDKP-- 711
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGD 1016
F +HD +CD+D+M +R F E+Y+ + ++ D P + +
Sbjct: 712 -FTVIHDCVLGRSCDMDQMGSDIRLHFAEMYKADVMQDWADQVGVELPVDLI-----KNT 765
Query: 1017 FDLREVLGSPYFFN 1030
D+ V S YFF+
Sbjct: 766 LDIDSVNQSLYFFS 779
>gi|294083965|ref|YP_003550722.1| DNA-directed RNA polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663537|gb|ADE38638.1| DNA-directed RNA polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 871
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 215/848 (25%), Positives = 362/848 (42%), Gaps = 126/848 (14%)
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR-------ARVVQAACIIGDAIE 308
K+ + P+ +L +M+A I + + + + G H R R+V+A ++G+ I
Sbjct: 75 KNPTNWYPFIYELDTEMLANIAIRQCVKAV--GSRHSRPAVGKLIGRMVEAN-VMGEVIR 131
Query: 309 QEVRIHKFLEKTKKKNET-KNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIV 367
Q + F + KK+ ++ N+ + D+ E+ V + + K+++
Sbjct: 132 QAFK--DFHPRGKKEYKSIYNRAVKRSDDF-------ERRLHYVKNQVAKEEITM----- 177
Query: 368 KGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET 427
DF W + +VG +I+ +TQ+ + D T+ ++ +S
Sbjct: 178 ----DFLDWTEKQCMEVGFHLIKCVTQSTEVVEVYDYWD----------TNKIKDMSHRF 223
Query: 428 KGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTH 487
+ ++ I+ L L A + PM+VPP+ W + ++ +R
Sbjct: 224 RYTAEIQNRIDEADLEF-DLSSPA------FRPMVVPPINWGTANHVGPYYDTETAIRAP 276
Query: 488 GAK-----QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
K Q++ VK ++ +A++TL + +N L+ + W +L
Sbjct: 277 LVKNVNPNQRKKIVKALKTGSMKECLDAVNTLQQVPYTINRYTLAAIK--WVVESKLDVE 334
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRER---HSQRCDIELKLSVARKM--K 597
++ +P P DE +V+ + R++ ++ + L+ A + K
Sbjct: 335 IEEF---VPVTPPIIDENDKDGTPSQVKRYYRAQRKKSIANANLVQFQTDLNEAESLCDK 391
Query: 598 DEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY 657
D+ F+ PHN DFRGR Y + P H D RG+ FA+ + + K L L +A +
Sbjct: 392 DDRRFWLPHNFDFRGRVYHI-PAFGHHRQDHIRGLFMFADKKPITKDNLKHLYFQIATTW 450
Query: 658 AGGV--------DKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
V DK++ + R + E++ + I + + G W KA+ P Q LA C
Sbjct: 451 GNQVSETDERKTDKITLDERYKWVEDNYEAILLAGKDYVAGFEHWSKADAPIQHLAACRE 510
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L L E ++ +P+ DGS +GLQHY+ L + A VNLV P D YS IA
Sbjct: 511 LY--LADQHGEGYLCGLPIGFDGSNSGLQHYSMLMKWKEDAFKVNLVPNHPPQDCYSFIA 568
Query: 770 ARVLVIIQR--DAQRDP--------AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYI 819
+ + QR D + D A+ D L + RK K+ +MT Y VT I
Sbjct: 569 EADMNLAQRIVDGECDELNENEITNAIMDDC--HNWLKHGITRKQTKKNIMTWPYSVTLI 626
Query: 820 GARDQ-------IKRRLKERGAPMEEAELFGASCYAAKVTLTALGE------MFQAARGI 866
G DQ I + +E AP E G+S A +TL L + ARG
Sbjct: 627 GMADQNRDDMEIITDKAEEEDAPHPFGEDRGSS---ASMTLAKLNSDSIKAVVASGARG- 682
Query: 867 MSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV-------KTSLQIL---TLQ 916
M +L + A I+AS N WT+ LG PV Q YR + + T+ KT+ ++ TL+
Sbjct: 683 MEFLRDLAGILASRNVHAEWTSILGFPVGQDYRDMKKVTINTEYIDRKTTRKVRYRGTLR 742
Query: 917 RETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEM 975
+ K + PNFVH +D +H+MM+ + G + VHDS+ T M
Sbjct: 743 AKQPTCETKGSKNGIAPNFVHHMDSTHLMMSVNKSNEYGASNLMCVHDSFSTDIESASVM 802
Query: 976 NRILREKFVELY-EMPIFENLLD--------SFQKSFPKLV-FPPLPERGD----FDLRE 1021
++ +ELY E+ + NLL+ S P + +P +PE+G+ D+R
Sbjct: 803 LDCIKVTLIELYEEVCHYSNLLEDCKSLVEYSDNPDDPDYIEWPEVPEKGEGDNALDVRA 862
Query: 1022 VLGSPYFF 1029
+L Y F
Sbjct: 863 ILDCDYAF 870
>gi|464683|sp|P33540.1|RPOP_NEUCS RecName: Full=Probable DNA-directed RNA polymerase
Length = 896
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 157/580 (27%), Positives = 256/580 (44%), Gaps = 62/580 (10%)
Query: 444 LKGLERTARHMVIPYMPMLVPPVKWTGYDK------GAHFFLPSYVMRTHGAK--QQRDT 495
LK L M +PM++PP++W D G + +R K + D
Sbjct: 269 LKTLINNITLMDTIELPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDA 328
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE 555
T K+L +A++ + +N ++L + R D+ D + K
Sbjct: 329 NDMTYNKEL---VDAVNFKSKIPYTINLKILDFITRDEFINR------DKKDNVIIYKHI 379
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL-SVARKMKDEEGFYYPHNVDFRGRA 614
D A L ++ +N K H+ + + S+A+ MKD + FY +D+RGR
Sbjct: 380 HPDSALLGEYMKDRKNPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRF 439
Query: 615 YPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE 674
Y LN G +L R +L F EG+ L GL LKI+ AN A G+DK S E RL + E
Sbjct: 440 YTSSCALNIQGGELARSLLLFKEGQKLNDIGLKALKIYTAN--AFGLDKRSKEERLDWVE 497
Query: 675 NHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSC 734
+L I D ++ W +A++P LA + L + FISH+P+ D +C
Sbjct: 498 QNLHKIID-----IDNYEIWREADEPLLFLACALELKGY---NEDPNFISHLPILMDATC 549
Query: 735 NGLQHYAALGRDTLGAAAVNLVA---REKPADVYSGIAARVLVIIQRDAQRDPAVFPDAL 791
NGLQH +A+ D + A VNL+ + P D+YS + + Q
Sbjct: 550 NGLQHLSAMVNDFVLAEKVNLLKSTENDNPRDLYSEVIPHI-------KQEILEASKSYE 602
Query: 792 RAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-----------------A 834
L V+R LVK+ +MT YG T G DQI + ++ A
Sbjct: 603 HTNLERINVERCLVKRGLMTITYGATERGIYDQIVSKFFQKDEWNKTVGLHFVCIDSDIA 662
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
P + +K+ +L ++ +M + K++ + PV W TP GL +
Sbjct: 663 PKDVVFTQKNILLLSKIIYNSLFKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVI 722
Query: 895 VQPYRKLGRHTVKTSL-----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV 949
Q Y K ++ T + +++ + +T + ++Q AF PNFVHS+DGS++++
Sbjct: 723 QQKYNKFTKYNETTYVASKRYKLVLRKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLIN 782
Query: 950 ACRKAG--LTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
R G + FA +HD + THA D ++ +++ F+ +Y
Sbjct: 783 TIRDEGRKINFASIHDCFATHANDTAWLSWYVKQSFIRIY 822
>gi|224116184|ref|XP_002331982.1| predicted protein [Populus trichocarpa]
gi|222832106|gb|EEE70583.1| predicted protein [Populus trichocarpa]
Length = 135
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 104/127 (81%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
+GSGKYR+L+ RQVKIE EAWE+A EY+ELL DMCE KLAPNLPYMKSLFLGWFEP D
Sbjct: 5 LGSGKYRVLRRRQVKIEAEAWEQATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTD 64
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
AIAKEQE R K + YA YFD LPAD M+VI MH+L +++TGGEHG ARVV AAC+I
Sbjct: 65 AIAKEQELIRTGKSRQGYASYFDLLPADKMSVIAMHQLAAMVVTGGEHGCARVVTAACMI 124
Query: 304 GDAIEQE 310
GDAIEQ+
Sbjct: 125 GDAIEQD 131
>gi|2239138|emb|CAA72337.1| putative T7/T3-like RNA polymerase [Hordeum vulgare subsp. vulgare]
Length = 129
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 104/127 (81%)
Query: 904 HTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHD 963
+ ++TSLQ L L+RE + + +RQ+ AFPPNFVHSLD SHMMMTA+ C++AGL FAGVHD
Sbjct: 3 YMIRTSLQCLALRREGDAIATQRQKAAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGVHD 62
Query: 964 SYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVL 1023
S+W HACDVD+MN+ILRE+FVELY MPI ENLL+ FQ FP + FPP P +G+FD+REVL
Sbjct: 63 SFWVHACDVDKMNQILREQFVELYSMPILENLLEEFQTLFPTVEFPPCPAQGNFDVREVL 122
Query: 1024 GSPYFFN 1030
S YFFN
Sbjct: 123 TSTYFFN 129
>gi|1449393|emb|CAA39045.1| putative RNA polymerase (mitochondrion) [Neurospora crassa]
Length = 896
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 157/580 (27%), Positives = 256/580 (44%), Gaps = 62/580 (10%)
Query: 444 LKGLERTARHMVIPYMPMLVPPVKWTGYDK------GAHFFLPSYVMRTHGAK--QQRDT 495
LK L M +PM++PP++W D G + +R K + D
Sbjct: 269 LKTLINNITLMDTIELPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDA 328
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE 555
T K+L +A++ + +N ++L + R D+ D + K
Sbjct: 329 NDMTYNKEL---VDAVNFKSKIPYTINLKLLDFITRDEFINR------DKKDNVIIYKHI 379
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL-SVARKMKDEEGFYYPHNVDFRGRA 614
D A L ++ +N K H+ + + S+A+ MKD + FY +D+RGR
Sbjct: 380 HPDSALLGEYMKDRKNPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRF 439
Query: 615 YPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE 674
Y LN G +L R +L F EG+ L GL LKI+ AN A G+DK S E RL + E
Sbjct: 440 YTSSCALNIQGGELARSLLLFKEGQKLNDIGLKALKIYTAN--AFGLDKRSKEERLDWVE 497
Query: 675 NHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSC 734
+L I D ++ W +A++P LA + L + FISH+P+ D +C
Sbjct: 498 QNLHKIID-----IDNYEIWREADEPLLFLACALELKGY---NEDPNFISHLPILMDATC 549
Query: 735 NGLQHYAALGRDTLGAAAVNLVA---REKPADVYSGIAARVLVIIQRDAQRDPAVFPDAL 791
NGLQH +A+ D + A VNL+ + P D+YS + + Q
Sbjct: 550 NGLQHLSAMVNDFVLAEKVNLLKSTENDNPRDLYSEVIPHI-------KQEILEASKSYE 602
Query: 792 RAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-----------------A 834
L V+R LVK+ +MT YG T G DQI + ++ A
Sbjct: 603 HTNLERINVERCLVKRGLMTITYGATERGIYDQIVSKFFQKDEWNKTVGLHFVCIDSDIA 662
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
P + +K+ +L ++ +M + K++ + PV W TP GL +
Sbjct: 663 PKDVVFTQKNILLLSKIIYNSLFKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVI 722
Query: 895 VQPYRKLGRHTVKTSL-----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV 949
Q Y K ++ T + +++ + +T + ++Q AF PNFVHS+DGS++++
Sbjct: 723 QQKYNKFTKYNETTYVASKRYKLVLRKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLIN 782
Query: 950 ACRKAG--LTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
R G + FA +HD + THA D ++ +++ F+ +Y
Sbjct: 783 TIRDEGRKINFASIHDCFATHANDTAWLSWYVKQSFIRIY 822
>gi|426387670|ref|XP_004060286.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Gorilla
gorilla gorilla]
Length = 266
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 167/315 (53%), Gaps = 71/315 (22%)
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V +++AQR V A
Sbjct: 5 CNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQNAQRRTRV------A 58
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 59 QVLEGFITRKVVKQTVMTVVYGVTCYGGRLQIEKRLRE---------------------- 96
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS---L 910
L + Q G + PLG+P++QPYR + VK S +
Sbjct: 97 --LNDFPQEFVG---------------------SPPLGVPIIQPYRLESK--VKQSGGGI 131
Query: 911 QILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWT 967
Q +T + K +Q+ FPPNF+HSLD SHMM+TA+ C + GL F VHD YWT
Sbjct: 132 QSITYTHNRDISRKPNTPKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCYWT 191
Query: 968 HACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF---PKLVFPP---------LPERG 1015
HA DV MN++ RE+FV L+ I ++L + F P+ + +P+ G
Sbjct: 192 HAADVSVMNQVCREQFVCLHSESILQDLSRFLVRRFCSEPQKILEASQMKETLQVVPKPG 251
Query: 1016 DFDLREVLGSPYFFN 1030
FDL V S YFF+
Sbjct: 252 AFDLELVKPSTYFFS 266
>gi|11466088|ref|NP_049543.1| RNA polymerase [Neurospora intermedia]
gi|4877818|gb|AAD31445.1| RNA polymerase [Neurospora intermedia]
Length = 896
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/565 (27%), Positives = 251/565 (44%), Gaps = 62/565 (10%)
Query: 459 MPMLVPPVKWTGYDK------GAHFFLPSYVMRTHGAK--QQRDTVKRTPKKQLEPVFEA 510
+PM++PP++W D G + +R K + D T K+L +A
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYNKEL---VDA 340
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVR 570
++ + +N ++L + R D+ D + K D A L ++ +
Sbjct: 341 VNFKSKIPYIINLKLLDFITRDEFINR------DKKDNVIIYKHIHPDSALLGEYMKDRK 394
Query: 571 NVKKENRERHSQRCDIELKL-SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
N K H+ + + S+A+ MKD + FY +D+RGR Y LN G +L
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
R +L F EG+ L GL LKI+ AN A G+DK S E RL + E +L I D ++
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTAN--AFGLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 690 GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 749
W +A++P LA + L FISH+P+ D +CNGLQH +A+ D +
Sbjct: 508 NYEIWREADEPLLFLACALELKGY---KEDPNFISHLPILMDATCNGLQHLSAMVNDFVL 564
Query: 750 AAAVNLVA---REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVK 806
A VNL+ + P D+YS + + Q L V+R LVK
Sbjct: 565 AEKVNLLKSTENDNPRDLYSEVIPHI-------KQEILEASKSYEHTNLERINVERCLVK 617
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERG-----------------APMEEAELFGASCYAA 849
+ +MT YG T G DQI + ++ AP + +
Sbjct: 618 RGLMTITYGATERGIYDQIVSKFFQKDEWNKTAGLHFVCIDSDIAPKDVVFTQKNILLWS 677
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS 909
K+ +L ++ +M + K++ + PV W TP GL + Q Y K ++ T
Sbjct: 678 KIIYNSLFKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVIQQKYNKFTKYNETTY 737
Query: 910 L-----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG--LTFAGVH 962
+ +++ + +T + ++Q AF PNFVHS+DGS++++ R G + FA +H
Sbjct: 738 VASKRYKLVLRKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLIKTIRDEGRKINFASIH 797
Query: 963 DSYWTHACDVDEMNRILREKFVELY 987
D + THA D ++ +++ F+ +Y
Sbjct: 798 DCFATHANDTAWLSWYVKQSFIRIY 822
>gi|291335757|gb|ADD95360.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S05-C243]
Length = 769
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 178/723 (24%), Positives = 305/723 (42%), Gaps = 119/723 (16%)
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNK---EDEEGDESNTVTTEQEKLRK 349
+ R+ A IG A+E E ++H + + K T K G ES RK
Sbjct: 109 KHRLTPIAEAIGKALEAEAQMHYYENEAKGLFITLKKNYWHQARGTESK---------RK 159
Query: 350 KVTDLIKKQKLPAVRRIVKGQDDFKPW----GQDARAKVGSRVIELLTQTAYIQSPADQL 405
+ + KQ + PW G+ AKVG +E L + +
Sbjct: 160 CIQTTMHKQHI-------------TPWVSWTGEKTHAKVGIFFLECLCEVSGW------- 199
Query: 406 ADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKG---LERTARHMVIPYMPML 462
+ + + G K Y +I + ++ + R A+ PML
Sbjct: 200 ----------------FIREYERKGRKTYTIISPSEKLMNHHDEIMRMAKLFSPLAKPML 243
Query: 463 VPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK--QLEPVFEALDTLGNTKWR 520
+PP W G ++ + + R H D ++R+ Q E + ++ + ++
Sbjct: 244 IPPRNWHSLQDGGYYL--NDLTRCH------DFIRRSNHAPIQGEIPYLFINKIQQVSYK 295
Query: 521 VNNRVLSVLDRIWSCG---GRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENR 577
+N ++ V + G G+ +++ P P PE + R+W+ + V +
Sbjct: 296 LNPFIVEVAKELEERGISVGKFRPVIEYEMPPKP--PEEASKDTWREWRRQAAIVHTARK 353
Query: 578 ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE 637
+ C + + V R+ +D+ +Y P + D+RGR YP+ L +D + ++ F E
Sbjct: 354 NETRKACRTRMTMDVVREFEDK-VYYIPWSFDYRGRVYPIPNLLTPQDTDFGKSLIIFNE 412
Query: 638 GRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW---- 693
G + K G+ W+K L+ Y G+ K + E R+A+ I D ++ L R W
Sbjct: 413 GTKITKKGMEWIKFQLSTSY--GLSKATMEERIAW-------IDDYENRALVERVWRDPV 463
Query: 694 -----WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
W A+DP+ LA C E F +H+PV D +C+GLQ A L +D
Sbjct: 464 GNVADWEHADDPWLFLAAC---NEWYELHYEHRFHTHLPVAVDATCSGLQILAGLAKDAS 520
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808
A VN++ +KP D Y+ IA+R + I P+ LR DRK K+
Sbjct: 521 TARMVNVLGSDKPQDAYATIASRSMEAI-----------PERLRPYW-----DRKATKRC 564
Query: 809 VMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868
VMT Y R I+ K++ +++ EL SC +A A+ E+ A +M
Sbjct: 565 VMTIPYNAKPFSNRSYIREAFKDKDVDVDKEEL--TSCVSA--VRAAMDEVVPGAMRVMK 620
Query: 869 WL-GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRETEKVMV 924
W+ E A+ I + Q ++WTTP G V Q K+ R ++ L +++ + V +
Sbjct: 621 WIETEVARAIKAGAQEIKWTTPSGFVVKQRLMKVAREKIQCQLMGRISISVAGAEKGVDL 680
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFV 984
K + A PN +HSLD S + +A A +HDS A D+ +++ ++R+ ++
Sbjct: 681 KHHKNATAPNLIHSLDAS---LLHLAVMDVNFPIALIHDSVLCRATDMCKLSTLVRKTYM 737
Query: 985 ELY 987
L+
Sbjct: 738 TLF 740
>gi|451988638|gb|AGF91115.1| RNA polymerase [Synechococcus phage S-CBP2]
Length = 793
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 158/598 (26%), Positives = 264/598 (44%), Gaps = 61/598 (10%)
Query: 447 LERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK---- 502
LER A + PML PV W+ G + A+ + D + RT K
Sbjct: 241 LER-ASELASCSWPMLCQPVDWSNDQIGGYL----------TAEGRFDRLVRTYSKVGSS 289
Query: 503 --QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP-ETEDE 559
Q + + L+ L + +R+N +V V + ++ + P +P E E
Sbjct: 290 LPQGDLPLQMLNNLQHQAYRLNRQVFEVAEHCFANFITVGQFRRDEHQDPPSRPAEGASE 349
Query: 560 AQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
++ ++ R ++ N + ++ + VARK DE+ + P + D+RGR YP+
Sbjct: 350 ETIKAYKVARRELEDVNAQLEAKNWRTTETMFVARKFIDEDRIWIPWSCDYRGRIYPITH 409
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDD 679
L G+D + + FA+ G +WL +A Y G+DK + + R+ + + +
Sbjct: 410 CLTPQGTDFDKAMFYFADE---GPINEYWLAFQVATTY--GLDKATMDERVEWVRANTEL 464
Query: 680 IFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQH 739
I A P++ W E+P+ LA C + + + T S +P D +C+GLQH
Sbjct: 465 ISTIAQNPIDTISLWRDVEEPWCFLAACFEYFDCCIACTRAT--SGLPCGIDATCSGLQH 522
Query: 740 YAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ 799
+A+ D + AA VN++ +KPAD Y +A + Q P + L
Sbjct: 523 LSAMTGDAVAAALVNVLPTDKPADGYKTVA-------EAAKQWLPEEYHQWL-------- 567
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEM 859
RK+ K+TVMT+ YGVT AR I L E G + L A + + A+ ++
Sbjct: 568 -TRKVTKRTVMTTPYGVTRHSARGYIMGALAEAGCDTRQEGLLTA--FTTAIYEKAMNKV 624
Query: 860 FQAARGIMSWLGECA-KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE 918
FQ +MS+L + A +++ + ++WTTP G V Q RK V+T Q++ + +
Sbjct: 625 FQGPVNVMSFLQQSALRLMKEGREALQWTTPSGFVVYQDCRKPLTERVQT--QLMGVGKI 682
Query: 919 TEKVM-------VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACD 971
T + V + + PN VHSLD S + K F +HD +CD
Sbjct: 683 TSAIYTGPGPVNVDKHKACTAPNLVHSLDASLLHFVFSEWDKP---FTVIHDCALGRSCD 739
Query: 972 VDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+DEM + +R F E+Y+ + ++ P + +G D+ +V S YFF
Sbjct: 740 MDEMGQQIRLHFAEMYKGDVLQDWAAQVGAFIPDDLI-----KGTLDIDQVNKSTYFF 792
>gi|21428972|gb|AAM50205.1| GH27547p [Drosophila melanogaster]
Length = 244
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 143/245 (58%), Gaps = 25/245 (10%)
Query: 810 MTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
MT+VYGVT GAR QI R+LK+ + ++ AS Y T +L EMF + R I W
Sbjct: 1 MTTVYGVTRYGARLQIARQLKDIDD-FPKDWVWPASTYLTTKTFESLREMFTSTREIQDW 59
Query: 870 LGECAKIIASE-NQPVRWTTPLGLPVVQPY-RKLGRHTVKTSLQILT--LQRETEKVMVK 925
ECA++I+ +Q V W TPLGLPVVQPY R+ +H+ ++ ++ E+ +
Sbjct: 60 FTECARLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNIL 119
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
+Q+ AFPPNF+HSLD SHMM+T++ C + G+TF VHD +WTHA V E+NR+ RE+FV
Sbjct: 120 KQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRMCREQFVA 179
Query: 986 LYEMPIFENLLDSFQKSFP--------------------KLVFPPLPERGDFDLREVLGS 1025
L+ PI E L + + ++ + +P++GDFDLR VL S
Sbjct: 180 LHSQPILEQLSEFMRHTYSFKDSDFINDGSVEDLSKRQLNRILKQMPQKGDFDLRNVLDS 239
Query: 1026 PYFFN 1030
YFF+
Sbjct: 240 VYFFS 244
>gi|167821777|ref|ZP_02453457.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 91]
Length = 769
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 192/660 (29%), Positives = 272/660 (41%), Gaps = 108/660 (16%)
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL---ERTARHMVIPYM---PMLVP 464
D F A T L + ETK SK V + N L G E A +V + PMLVP
Sbjct: 172 DHFCAATGWLEERTGETKMMSK---VRKPNTYHLTGKFLDEVAAGGLVADFAERRPMLVP 228
Query: 465 PVKWTGYDKGAHFFLPSYVMRTHGA--KQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRV 521
PV WT + THG Q V+ T + + E + AL+ L T++RV
Sbjct: 229 PVPWTTFS-------------THGGYLHDQIPAVRGTRRPIESEVIVSALNALQATRFRV 275
Query: 522 NNRVLSVLDRIWS----CGGRLAD---LVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKK 574
N RVL V + GG + + + R+D P
Sbjct: 276 NRRVLEVAQTFRTNAEDMGGAVINGRYIETRHDTP------------------------- 310
Query: 575 ENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILE 634
R ++ L LS ++ DE+ FY+P N+D+RGR YP ++ G+DLC+G LE
Sbjct: 311 -ESMRRAKTIRSALTLSAFVELVDEDAFYFPWNLDWRGRMYPATSLISPQGADLCKGCLE 369
Query: 635 FAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG---------RLAFTENHLDDIFDSAD 685
FA+G LG+ G WL IHL NL G DK++ G R A+T + I A
Sbjct: 370 FADGTPLGRDGGKWLAIHLCNL--AGEDKVTVGGKKVHRTPDEREAWTLSQESTILRVAA 427
Query: 686 KPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGR 745
P W+KA+ P+Q LA C R + F S + DGSC+G+Q A + R
Sbjct: 428 DPRNNME-WMKADKPWQFLAACFEWV-GYREEG-DAFRSRLAGALDGSCSGVQMLAGMTR 484
Query: 746 DTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ------ 799
D A VNLV E+ D Y +A + ++R + A A + Q
Sbjct: 485 DASAGAMVNLVPSERGDDYYGRMAEAL-------SKRLCGLVDHADTATMARLQFWAEKS 537
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEM 859
+DR L+K MT VY +Q++ + GAP E+ A A + A G M
Sbjct: 538 IDRDLLKAPSMTKVYSAGTYTFGEQVQNKT---GAPEAESMWLAAQINAC-FSDVAPG-M 592
Query: 860 FQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQI------- 912
+A MS+L + ++ + P+ W TP GL V Q + +V QI
Sbjct: 593 LRA----MSYLQAVSDVMTAAGLPLVWRTPAGLRVEQA--RTCTRSVPLETQIGGPESRK 646
Query: 913 -LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHAC 970
+T + QR PNFVH +D SHM G+ F +HDS+
Sbjct: 647 QRRFTVDTGDLSKNDQRAGVAPNFVHGVDASHMAYVVNDLYARGVRNFWMIHDSFGAPFA 706
Query: 971 DVDEMNRILREKFVELYEMPIFENLLDSFQKSFP---KLVFPPLPERGDFDLREVLGSPY 1027
E+ R RE+F+ L + D + + P P G D+ V S Y
Sbjct: 707 QCGEVFRSTREQFIALMSPDLLRRWADDVTAALTDAQRAGLPEFPSYGSLDIGVVRESVY 766
>gi|18640475|ref|NP_570316.1| RNA polymerase [Synechococcus phage P60]
Length = 574
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/529 (28%), Positives = 248/529 (46%), Gaps = 47/529 (8%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKW 519
PM+ PP WT D+G +L + T ++ K+ PV E L+ L +
Sbjct: 35 PMVCPPNDWT--DEGRGGYLTEEIRGTAPMIRKVGKPIGDSKQGTIPV-EFLNNLQRQSY 91
Query: 520 RVNNRVLSVLDRIWSCGGRLADLVDRNDVP------LPEKPETEDEAQLRKWQWKVRNVK 573
R+N +L+V + + + + +D P P+ E E + ++W+ R++
Sbjct: 92 RINAAILAVANWCYDNSRTVGKFI--HDQPRERLDSFNGDPKAEPE-RFKEWKRMQRSID 148
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
N + + + VA + D+E F+ P + D+RGR YP + LN G+D + +L
Sbjct: 149 DFNAQLFQRNWRATETMFVANQY-DDEVFWIPWSFDYRGRVYPQNTQLNPQGTDFDKSLL 207
Query: 634 EFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
FAE G+ +WL H+ Y G DKLSH R+A+T+ + + I A+ P+
Sbjct: 208 LFAEE---GEVDEYWLAWHVCTTY--GNDKLSHNDRVAWTQENHELITIIAEDPIGAISL 262
Query: 694 WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
W A +P+ LA CI + + + +T S +P+ D +C+GLQH +++ RD + A V
Sbjct: 263 WEGAGEPWMFLAACIEYHACVITGAKQT--SGLPIGIDATCSGLQHLSSMTRDAVAAKQV 320
Query: 754 NLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
N++ ++ P+D Y +A + I+ D ++ P ++RK+ K+TVMT
Sbjct: 321 NVIRGDQDGPSDGYKTVAEAAIKYIE-----DESIHP----------YMNRKITKRTVMT 365
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
YGV+ AR I+ L + G + G A V A+ E+F +M+WL
Sbjct: 366 VPYGVSRDSARAYIREALHDAGFDLSTKGRLGQVTDA--VYRKAVPEVFAGPVDVMNWLQ 423
Query: 872 ECA-KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMV----KR 926
+ A ++ + + + WTTP G VVQ RK +KT+L Q +R
Sbjct: 424 QTAMDLLDAGAEQIEWTTPSGFRVVQDIRKPRTKLIKTTLMGSVQQIRVADGFAGPDRQR 483
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+ A PN VHSLD S + + K F +HD +CD++EM
Sbjct: 484 HKGAIAPNLVHSLDASLLHLMFYEYDKP---FTVIHDCILGRSCDMNEM 529
>gi|388549265|gb|AFK66464.1| DNA-directed RNA polymerase [Synechococcus phage S-CBP3]
Length = 776
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 171/686 (24%), Positives = 293/686 (42%), Gaps = 74/686 (10%)
Query: 357 KQKLPAVRRIVKGQ--DDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 414
+Q+L V+ ++ D ++PWG+ R K+G L DA ++
Sbjct: 151 QQRLTVVKTMMNRHEVDPWEPWGRHNRVKLGG-----------------WLLDAIAEVSQ 193
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKG-LERTARHMVIPYMPMLVPPVKWTGYDK 473
F + TV + K + Y V + ++ + R A PMLVPP W+
Sbjct: 194 WFEKS--TVQEGQK--TVNYVVPTAEFMAVRDQIMRDAELFAPIAWPMLVPPNDWSNERA 249
Query: 474 GAHFFLPSYVMRTHGAKQQRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
G + + VM HG D V+R P+ Q + + L+ + + +N ++ V + +
Sbjct: 250 GGYIL--NEVM--HG----YDLVRRGGPRIQGKAPIDFLNKIQRVAYTLNPFIVEVAETL 301
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQR--CDIELKL 590
++ V + LP KP E + ++ R + N H+ R C + +
Sbjct: 302 QERQTQVGKFVPIVSLDLPPKPVDIAENYEARKDYRRRAAETMNTNAHAFRRSCRTRMTM 361
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+ K+ + FY P + D+RGRAYP+ +L +D + +L FA+ + WL+
Sbjct: 362 EAVARFKNVDRFYVPWSFDYRGRAYPIPSFLTPQDTDFGKSLLRFADESYMTHEAEDWLR 421
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
A Y G+DK RLA+ + + I A P++ W A++P+Q LA C L
Sbjct: 422 FQCATTY--GLDKAPMSERLAWAHENEELIKRIAKHPIDCLSEWEVADEPWQFLAACDEL 479
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
+ + + + +PV D +C+GLQ A L RD A VN++ ++P D Y +
Sbjct: 480 YHCVLIADRQ--YTGLPVATDATCSGLQILAGLARDKSTAQLVNVLPGDRPQDAYKVV-- 535
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
A+ P++++ + DRK VK+ VMT Y R I+ LK
Sbjct: 536 ---------AETAKPHCPESIQPYM-----DRKTVKRVVMTVPYNAKPYSNRGYIREALK 581
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL-GECAKIIASENQPVRWTTP 889
E+ + + +L K A+ + +MSW+ E I + + WTTP
Sbjct: 582 EKKVEISKEDLTA----TVKAVRNAMDVVVPGPMAVMSWIESEVRNAIKGGAEFLEWTTP 637
Query: 890 LGLPVVQPYRKLGRHTVKTSL------QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSH 943
G V Q K ++ L ++L + E KV + + A PN +HSLD S
Sbjct: 638 SGFVVHQRLDKYDSQGIRLQLLGQARCKVLVKKEEGGKVDINHHKNATAPNLIHSLDASL 697
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
+ ++ + + A +HDS A D+ ++ ++RE ++ L+ + L F +
Sbjct: 698 LHLSTL---RFDAPIALIHDSVLCRATDMSVLSTLVRETYMHLFAE---HDYLRDFARQI 751
Query: 1004 PKLVFPPLPERGDFDLREVLGSPYFF 1029
PP+ GD + V+ S YFF
Sbjct: 752 GAESEPPII--GDLEPESVIESTYFF 775
>gi|61806414|ref|YP_214191.1| T7-like RNA polymerase [Prochlorococcus phage P-SSP7]
gi|61374339|gb|AAX44193.1| T7-like RNA polymerase [Prochlorococcus phage P-SSP7]
Length = 778
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 153/582 (26%), Positives = 258/582 (44%), Gaps = 56/582 (9%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTP--KKQLEPVFEALDTLGNT 517
PML+ P W+ G ++ + + + H + V+R + Q E ++ L+ +
Sbjct: 240 PMLIEPRDWSPMHDGGYYL--NDLTKCH------EMVRRGKPLRIQGETTYQFLNEIQKV 291
Query: 518 KWRVNNRVLSVLDRIWSCG---GRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKK 574
K+R+N ++ V + + G+ +++ D P P P EDE ++W+ +
Sbjct: 292 KYRLNPFIVMVAEELEEREIEVGKFRPVINHPDPPKP--PNMEDEESRKQWRKDKAIARN 349
Query: 575 ENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILE 634
+N C + ++ R+ KD+E +Y P + D+RGRAYP+ +L +D + ++
Sbjct: 350 KNANEWRISCRTRMTMNCVREFKDKE-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLIR 408
Query: 635 FAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE--NHLDDIFDSADKPLEGRR 692
FAE + + G+ WL +A Y G+DK + E RL + ++ I A P+
Sbjct: 409 FAEEAPITEDGMKWLAFQVATTY--GLDKATMEERLDWVNEPENIKLIKRVATDPINNIG 466
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
W A++PF+ LA C + + T + +PV D +C+GLQ A L RD A+
Sbjct: 467 DWEAADEPFEFLAGCEEYYSVVLIKTRTT--TGLPVATDATCSGLQILAGLARDKSTASL 524
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
VN++ +KP D Y IA + L I P+ LR DRK K+ VMT
Sbjct: 525 VNVIPSDKPQDAYKVIAEKSLEHI-----------PERLRPYW-----DRKKTKRCVMTI 568
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL-G 871
Y R I+ ++ +E EL K A+ + +M W+
Sbjct: 569 PYNAKPFSNRQYIRDAFEDIDIEVENDEL----TQIVKAVRDAMEAVVPGPMKVMRWIEQ 624
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVMVKRQ 927
E + I + W TP G V Q K V+ L +I + E + V ++
Sbjct: 625 EVSNAIKEGATEITWVTPSGFRVNQRLMKYDHKNVELHLMGRCRIKVIDGE-KGVDLRHH 683
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+ A PN +HSLD S + ++A K A +HDS A D+ ++ ++R+ ++ L+
Sbjct: 684 KNATAPNLIHSLDASLLHLSAT---KFNAPIALIHDSVLCRATDMTNLSTLVRDTYMHLF 740
Query: 988 EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ L F K+ PP+ GD + V+ S YFF
Sbjct: 741 AE---HDFLKDFAKAINAKTEPPI--IGDLEPESVIESTYFF 777
>gi|239907675|ref|YP_002954416.1| RNA-polymerase [Desulfovibrio magneticus RS-1]
gi|239797541|dbj|BAH76530.1| putative RNA-polymerase [Desulfovibrio magneticus RS-1]
Length = 619
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 149/613 (24%), Positives = 262/613 (42%), Gaps = 93/613 (15%)
Query: 460 PMLVPPVKWTGYDKGAHFFLP---SYVMRTHGAKQQRDTVKRTPKKQLEPVF-EALDTLG 515
PM P +W G + + S+ +KQ+ + K + F +AL+ L
Sbjct: 56 PMFCSPDEWKKDLSGGGYLIKEDHSFAFNVKSSKQRICIISEYKKNSFDKTFLKALNLLQ 115
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575
T + +N ++L+ + +L K +D+
Sbjct: 116 QTPYNINKKILNTMKHFHGSTSYGNNLT---------KKLLQDQT--------------- 151
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
LS+A + D FY P +DFRGR Y ++ D R +L F
Sbjct: 152 --------------LSLADDLADRT-FYIPWYLDFRGRMYSSVLQISPQSHDEGRSLLVF 196
Query: 636 AEGRTLGK----SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
+E + + K + L L + + Y K+S E +++ E++ DIF SA P+
Sbjct: 197 SEKKHIDKHNECASLENLAVFGYSKYGSPTGKVSKEKMISWIESNERDIFKSAQDPILNF 256
Query: 692 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 751
+W KA D + LA C +S + E + ++IPV+ DG+CNG QHYAAL RD + A
Sbjct: 257 EFWQKASDRYSFLAFCFEWKNIQQSKAGERY-TNIPVYVDGTCNGFQHYAALLRDHISAP 315
Query: 752 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 811
VNLV E P D Y + ++ + F D + K + VDR +K+++++
Sbjct: 316 FVNLVDGEIPGDFYQNVVDKL------HSSAGTTDFSDDITRKFVAEFVDRSFIKKSIIS 369
Query: 812 SVYG--------VTYIGARDQIKRRL-----------KERGAPMEEAELFGASCYAAKVT 852
+ YG VT D + ++ E ++ +L + K
Sbjct: 370 AGYGAGLERRSKVTSKNLHDALVQKYGKNWFQVIGLATENSIEDKDIKLLEKARKIEKQI 429
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL-- 910
A+ ++ A +WL + N+ + W P G+PV Y + + + +
Sbjct: 430 DDAIKDICPAFSQAKNWLTGVQSLFNENNKCLCWNNPAGVPVHNFYYQFPVYEISLYMDG 489
Query: 911 QILTLQ----RETEKVMVKRQRT--AFPPNFVHSLDGSHMMMTAVACRKA-----GLTFA 959
++ +Q T+++ +++++T + PN++HSLD H + K+ A
Sbjct: 490 KLHKIQFRDYESTQEMSLRKKKTSSSISPNYIHSLDAGHAAKIITSFVKSLGKNTPHCIA 549
Query: 960 GVHDSYWTHACDVDEMNRILREKFVELY---EMPIFENLLDSFQKSFPKLVFPPLPERGD 1016
VHDS+ H V+ + +I+RE+F E++ ++ IF++ ++ F + P LP G+
Sbjct: 550 SVHDSFACHTTHVNALQKIIREQFCEMHSKNQLKIFKDQVE----QFFDVSLPDLPSFGN 605
Query: 1017 FDLREVLGSPYFF 1029
DL +VL S YFF
Sbjct: 606 LDLNDVLKSRYFF 618
>gi|265525452|gb|ACY76218.1| predicted protein [Prochlorococcus phage P-SSP7]
Length = 727
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 153/582 (26%), Positives = 258/582 (44%), Gaps = 56/582 (9%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTP--KKQLEPVFEALDTLGNT 517
PML+ P W+ G ++ + + + H + V+R + Q E ++ L+ +
Sbjct: 189 PMLIEPRDWSPMHDGGYYL--NDLTKCH------EMVRRGKPLRIQGETTYQFLNEIQKV 240
Query: 518 KWRVNNRVLSVLDRIWSCG---GRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKK 574
K+R+N ++ V + + G+ +++ D P P P EDE ++W+ +
Sbjct: 241 KYRLNPFIVMVAEELEEREIEVGKFRPVINHPDPPKP--PNMEDEESRKQWRKDKAIARN 298
Query: 575 ENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILE 634
+N C + ++ R+ KD+E +Y P + D+RGRAYP+ +L +D + ++
Sbjct: 299 KNANEWRISCRTRMTMNCVREFKDKE-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLIR 357
Query: 635 FAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE--NHLDDIFDSADKPLEGRR 692
FAE + + G+ WL +A Y G+DK + E RL + ++ I A P+
Sbjct: 358 FAEEAPITEDGMKWLAFQVATTY--GLDKATMEERLDWVNEPENIKLIKRVATDPINNIG 415
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
W A++PF+ LA C + + T + +PV D +C+GLQ A L RD A+
Sbjct: 416 DWEAADEPFEFLAGCEEYYSVVLIKTRTT--TGLPVATDATCSGLQILAGLARDKSTASL 473
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
VN++ +KP D Y IA + L I P+ LR DRK K+ VMT
Sbjct: 474 VNVIPSDKPQDAYKVIAEKSLEHI-----------PERLRPYW-----DRKKTKRCVMTI 517
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL-G 871
Y R I+ ++ +E EL K A+ + +M W+
Sbjct: 518 PYNAKPFSNRQYIRDAFEDIDIEVENDEL----TQIVKAVRDAMEAVVPGPMKVMRWIEQ 573
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVMVKRQ 927
E + I + W TP G V Q K V+ L +I + E + V ++
Sbjct: 574 EVSNAIKEGATEITWVTPSGFRVNQRLMKYDHKNVELHLMGRCRIKVIDGE-KGVDLRHH 632
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+ A PN +HSLD S + ++A K A +HDS A D+ ++ ++R+ ++ L+
Sbjct: 633 KNATAPNLIHSLDASLLHLSAT---KFNAPIALIHDSVLCRATDMTNLSTLVRDTYMHLF 689
Query: 988 EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ L F K+ PP+ GD + V+ S YFF
Sbjct: 690 AE---HDFLKDFAKAINAKTEPPI--IGDLEPESVIESTYFF 726
>gi|76809902|ref|YP_333056.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 1710b]
gi|254261887|ref|ZP_04952941.1| DNA-directed RNA polymerase [Burkholderia pseudomallei 1710a]
gi|76579355|gb|ABA48830.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 1710b]
gi|254220576|gb|EET09960.1| DNA-directed RNA polymerase [Burkholderia pseudomallei 1710a]
Length = 769
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 167/606 (27%), Positives = 246/606 (40%), Gaps = 101/606 (16%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGA--KQQRDTVKRTPKK-QLEPVFEALDTLGN 516
PMLVPPV WT + THG Q V+ T + + E + AL+ L
Sbjct: 224 PMLVPPVPWTTFS-------------THGGYLHDQIPAVRGTRRPIESEVIVSALNALQA 270
Query: 517 TKWRVNNRVLSVLDRIWS----CGGRLAD---LVDRNDVPLPEKPETEDEAQLRKWQWKV 569
T++RVN RVL V + GG + + + R+D P
Sbjct: 271 TRFRVNRRVLEVAQTFRTNAEDMGGAVINGRYIETRHDTP-------------------- 310
Query: 570 RNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
R ++ L LS ++ +E+ FY+P N+D+RGR YP ++ G+DLC
Sbjct: 311 ------ESMRRAKTIRSALTLSAFAELVNEDAFYFPWNLDWRGRMYPATSLISPQGADLC 364
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEG---------RLAFTENHLDDI 680
+G LEFA+G +LG+ G WL IHL NL G DK++ G R A+T + I
Sbjct: 365 KGCLEFADGTSLGRDGGKWLAIHLCNL--AGEDKVTVGGKKVHRTPDEREAWTLSQESMI 422
Query: 681 FDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHY 740
A P W+KA+ P+Q LA C + F S + DGSC+G+Q
Sbjct: 423 LRVAADPRNNME-WMKADKPWQFLAACFEWVGYREEG--DAFRSRLAGALDGSCSGVQML 479
Query: 741 AALGRDTLGAAAVNLVAREKPADVYS----GIAARVLVIIQRDAQRDPAVFPDALRAKLL 796
A + RD A VNLV + D Y ++ R+ ++ D A A+L
Sbjct: 480 AGMTRDASAGAMVNLVPAPRGDDYYGRMADALSKRLCGLVD---HADAATM-----ARLQ 531
Query: 797 L---SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
+DR L+K MT VY +Q++ + GAP E+ A A
Sbjct: 532 FWAEKSIDRDLLKAPSMTKVYSAGTYTFGEQVQNKT---GAPEAESMWLAAQINA----- 583
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQI- 912
++ M++L + ++ + P+ W TP GL V Q + +V QI
Sbjct: 584 -CFSDVAPGMLNAMAYLQAVSDVMTAAGMPLVWRTPAGLRVEQA--RTCTRSVPLETQIG 640
Query: 913 -------LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDS 964
+T + QR PNFVH +D SHM G+ F +HDS
Sbjct: 641 GPESRKQRRFTVDTGDLSKNDQRAGVAPNFVHGVDASHMAYVVNDLYARGVRNFWMIHDS 700
Query: 965 YWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP---KLVFPPLPERGDFDLRE 1021
+ E+ R RE+F+ L + D + + P P G D+
Sbjct: 701 FGAPFVQCGEVFRSTREQFIALMSPDLLRRWADDVTAALTDAQRAGLPEFPSYGSLDIGV 760
Query: 1022 VLGSPY 1027
V S Y
Sbjct: 761 VRESVY 766
>gi|372217683|ref|YP_005087365.1| RNA polymerase [Cyanophage P-SSP2]
gi|310005846|gb|ADP00231.1| RNA polymerase [Cyanophage P-SSP2]
Length = 733
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 151/584 (25%), Positives = 260/584 (44%), Gaps = 58/584 (9%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLE--PVFEALDTLGNT 517
PML+ P WT D G ++ + + H + V+R + +++ ++ L+ +
Sbjct: 193 PMLIEPRDWTTLDDGGYYL--NQLTNCH------EMVRRGEQLRIQGKTTYQFLNQIQKV 244
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENR 577
K+R+++ ++ V + + + P+P KP D + K QWK N+
Sbjct: 245 KYRLSDFIVGVAKELEEKEIEVGKFRPVINHPIPAKPADFDTNKESKKQWKREAGIAHNK 304
Query: 578 ERHSQR--CDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
+ R C + ++ R+ + ++ +Y P + D+RGRAYP+ +L +D + +L F
Sbjct: 305 NANEWRISCRTRMTMNCVREFEGKD-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLLRF 363
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT---ENHLDDIFDSADKPLEGRR 692
+E + + G+ WL +A Y G+DK + E RLA+ EN L I A P+
Sbjct: 364 SEESEITEDGMKWLAFQVATTY--GLDKATMEERLAWVGKRENIL-LIIRVATDPVNNIG 420
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
W A++P+Q LA C + + T +PV D +C+GLQ A L RD A
Sbjct: 421 DWEAADEPWQFLAACHEYHSVVMAGKETT---GLPVATDATCSGLQILAGLARDKSTARL 477
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
VN++ +KP D Y IA + + I P+ LR DRK K+ VMT
Sbjct: 478 VNVIPSDKPQDAYQVIADKSIKDI-----------PERLRPYW-----DRKKTKRCVMTI 521
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL-G 871
Y R I+ K+ +E+ EL + A+ + +M W+
Sbjct: 522 PYNAKPFSNRQYIRDAFKDIDIEVEKEEL----TQIVQAVRNAMEVVVPGPMKVMRWIEQ 577
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVK------TSLQILTLQRETEKVMVK 925
E +K I + + + W TP G V Q K ++ T+L++ +E V +
Sbjct: 578 EVSKAIRNGAKDLMWVTPSGFRVTQKLMKQDWKRIQLQLFGTTNLKVSIPDKEL-GVDLA 636
Query: 926 RQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVE 985
+ A PN +HSLD S + ++A + + +HDS A D+ ++ ++R+ ++
Sbjct: 637 HHKNATAPNLIHSLDASLLHLSAT---RFEAPISLIHDSVLCRATDMTFLSTLVRDTYMH 693
Query: 986 LYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
L+ + L F ++ PP+ GD EV+ S YFF
Sbjct: 694 LFAE---HDFLRDFARAIEAESEPPII--GDLQPSEVIESTYFF 732
>gi|1236340|gb|AAB01082.1| RNA polymerase, partial [Acanthamoeba castellanii]
Length = 157
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 114/158 (72%), Gaps = 6/158 (3%)
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
SVYGVT+IGAR QI+ LK++G + + ++F AS Y A T +++ EMF AR IM+WL
Sbjct: 1 SVYGVTFIGARQQIENALKDKGK-VSDDDMFLASRYLATSTFSSIKEMFSGAREIMTWLS 59
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGR--HTVKTSLQILTLQRETEK---VMVKR 926
+CA +IA + +PV W TP+GLPVVQPYR G+ TV T+LQ + L +E V ++
Sbjct: 60 DCATLIAKQGKPVTWVTPMGLPVVQPYRTKGKQTQTVVTALQNVMLVKEENDSLPVNTRK 119
Query: 927 QRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
QRTAFPPN+VHSLD +HMM+TA+ C +AGLT+A VHDS
Sbjct: 120 QRTAFPPNYVHSLDSTHMMLTALQCHEAGLTYASVHDS 157
>gi|395132388|dbj|BAM29336.1| rnapol (mitochondrion) [Lentinula edodes]
Length = 1109
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 163/609 (26%), Positives = 273/609 (44%), Gaps = 86/609 (14%)
Query: 459 MPMLVPPVKW-TGYDKGAHF-------FLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 510
+ M+ P KW + F FL + + + Q +T L+ + +
Sbjct: 459 LVMICEPCKWEITINDTKSFNINKYGGFLLNNINKNEFLNQSFINNGKTTLHDLK-IIDC 517
Query: 511 LDTLGNTKWRVNNRVLS-VLDRIWSCGG--------RLADLVDRNDVPLPEKPETEDEAQ 561
++ LG+ + +N +VL VL+ I S G ++ +L+ N + +
Sbjct: 518 INYLGSIPYTINTQVLKHVLNLIKSIEGEEQLYNNNKIKELIKLN---MHHNTKNLYNLT 574
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVAR--KMKDEEGFYYPHNVDFRGRAYPMHP 619
LRK + + K N + +S + I L + + Y+ + +D+RGR Y
Sbjct: 575 LRKKYGDISLIHKHNSQYYSDKSIITSALLFSSWCDSSKDNSIYFNYFIDWRGRLYTDTS 634
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHL-- 677
YL+ G +L R +L F G+ + + GL LKI+ AN + G+DKLS+ RL +TEN+L
Sbjct: 635 YLSFQGGNLARSLLLFKRGQLITEKGLEHLKIYTANCF--GLDKLSYNQRLEWTENNLEK 692
Query: 678 --------DDIFDSA---DKPL--EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
DD F S KP+ E + ++A++P L+ C+ L S P F+S
Sbjct: 693 IISLPNLSDDDFKSMIHNHKPIYSEFYNFMMEADEPLLFLSCCVELKNYY--SDPNRFLS 750
Query: 725 HIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK---PADVYSGIAARVLVIIQRDAQ 781
++PV+ D +C+GLQH + + DT A VN+V K P DVY+ + V IQ +
Sbjct: 751 NLPVYLDATCSGLQHLSTMINDTNLAKYVNIVKSNKEDIPNDVYTHMVLFVNKKIQEYIK 810
Query: 782 RDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIK----RRL-------- 829
D ++ A L ++RK +K +MT YG T G +Q+K R++
Sbjct: 811 VDYSL------AILENININRKFIKPGIMTISYGATTRGIAEQLKNNHFRQIDLVKGKSL 864
Query: 830 ------KERGAPMEEAELFGASCYA-AKVTLTALGEMFQAARGIMSWLGECAKIIASENQ 882
KE + L Y AK + L ++F ++ +L + K++
Sbjct: 865 TYELISKEFNKTDFDIHLTVKQIYVLAKAIHSVLYDVFPNLTILVKYLKDMNKLLKKLKL 924
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVM-VKRQRTAFPPNFVH 937
P W TP GL + Q Y + + TS+ + +TL+ V +++Q + PN VH
Sbjct: 925 PTIWLTPAGLIIEQNYAPIKSRDLTTSILGKRRGITLREMDRNVTDIRKQNNSIVPNVVH 984
Query: 938 SLDGSHMMM------TAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 991
S D S++ + + + K L +HD + T+A DVDEM ++ F+ LY
Sbjct: 985 SFDASNIALLVENISSNFSVNKMNL--LTIHDCFATNANDVDEMVLKVKLAFIALYSEKS 1042
Query: 992 FENLLDSFQ 1000
F +DS+
Sbjct: 1043 F---IDSYH 1048
>gi|320158397|ref|YP_004190775.1| DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
gi|319933709|gb|ADV88572.1| possible DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
Length = 927
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 199/735 (27%), Positives = 310/735 (42%), Gaps = 138/735 (18%)
Query: 416 FTHALRTVSKET----------KGGSKK-YGVIECNPLVLKGLERTARHMVI----PYMP 460
F HAL ++ T +GG K+ Y + + N + L LE T R + Y P
Sbjct: 209 FGHALIALAATTLGWFKAEQRIEGGHKRIYLIAQDNFMWL--LEETQREIARLARPTYAP 266
Query: 461 MLVPPVKWT--GYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
M+VPP KW+ +GA + P+ + + + ++ +E V++AL+ + T
Sbjct: 267 MVVPPRKWSPETVRRGA-YLTPAGRPLSMIKTRNKSYLRELQTAGMEKVYDALNRIQETP 325
Query: 519 WRVNNRVLSVLDRI------WSCGGRLADL--VDRNDVPLPEKPETEDEAQLRKWQWKVR 570
R+N + + LD W+ L + +D D P +PE ++ R V+
Sbjct: 326 VRINKTIYNWLDTFLMQQLPWAMDIGLPAMHKLDIKDYT-PTQPEGLPDSDYR-----VK 379
Query: 571 NVKKENRERHSQRCDIELKLS-------VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNH 623
+K RE + KLS +A+ D + F+ P D R R YP+ LN
Sbjct: 380 EYQKACREFYLMEASERSKLSAMLGMMEMAKSYLDRDRFFVPWQGDTRMRVYPVSK-LNF 438
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENH------- 676
G+D + + +FA+G LGK GL WL IH+ANL GVDK++ E R+ + + H
Sbjct: 439 QGADYVKALCQFADGVALGKHGLKWLMIHMANLM--GVDKVTFEERVKWVKEHKAQIIAL 496
Query: 677 ------LDDIFDSADKPLEG--------RRWWLKAEDPF----------QCLAVCINLTE 712
D SADKP++ W +K + F C + I L
Sbjct: 497 AKDPRECRDFLMSADKPMQAIACATELAEAWSMKNHEEFVSYIPIALDGSCSGLQI-LGA 555
Query: 713 ALRSSSPETFISHIP---------VHQD----------GSCNGLQHYAALGRDTLGAAAV 753
ALR ++ IP V D G C + AL A+
Sbjct: 556 ALRCEKTGEHVNLIPAGRVADIYRVVADIVTNEFKSMVGECKSKEDAEALA----AQKAL 611
Query: 754 NLVAREKPADVYSGIAARVLV---IIQRDAQRDP---AVFPDALRA---------KLLLS 798
+ D + AA L ++ D ++ A F +R L
Sbjct: 612 EVFTAAHDGDATNFDAALALAKEHAVREDKEKGTEKEASFITEMRKVYRAYTEAYAWLQF 671
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRRL--------KERGAPMEEAELF------GA 844
++R VK+ VMT YG G ++Q + K++ E+AE A
Sbjct: 672 GINRGTVKRNVMTYCYGSAQFGFKEQCMEDIIYPAYMEYKQKKNRGEDAEWHFHGNGSAA 731
Query: 845 SCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRH 904
+ AK A+ A M W+ + A +IA +N PVRWTTPLG PV+Q YR
Sbjct: 732 AALMAKHAYAAVKRTVLRAAQAMDWMQKAAYLIAQDNAPVRWTTPLGFPVLQEYRVTKEV 791
Query: 905 TVKTSL----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMM-MTAVACRKAGLT-F 958
TV + + L ++ E+ + + + PN VHSLD H+ + +A K G+ F
Sbjct: 792 TVDCVIFGKRRQLNIREESLDYDKNKAKNSIAPNVVHSLDSCHLQSLVNLAYEKHGIKHF 851
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQ-KSFPKL--VFPPLPER 1014
A +HDS+ THA + + +++RE VE++E +F L F+ + P+ F LPE
Sbjct: 852 ALIHDSFGTHAGNTEVFFKVIREAMVEMFENTDVFAELEQEFKAQCNPEKHDQFLKLPEY 911
Query: 1015 GDFDLREVLGSPYFF 1029
G+ DL +L S + F
Sbjct: 912 GNLDLHGILESDFAF 926
>gi|449531519|ref|XP_004172733.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like,
partial [Cucumis sativus]
Length = 234
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 144/243 (59%), Gaps = 19/243 (7%)
Query: 47 MWRNVAKQAISLHLK--KPFSRAYSFLGISQDSILRDKVKFV-CLDMVPRGIHEVGSGRI 103
MWRNV K A S K FS + S +++D I D+++ L+ + GS RI
Sbjct: 1 MWRNVFKTAASRKAKLFSEFSSSTS-RKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRI 59
Query: 104 GEILNHEDYMGRTSFGVLKNDN-------FWCPRGYATVAEAVSSTDVEEDVSIVEEIQE 156
I H +G T+ + N + +GYAT AEA E D+S EEIQE
Sbjct: 60 --IFLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAI---FEGDLSGSEEIQE 114
Query: 157 LLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLM 216
+++ + K+++ E + + + G KY ML+ RQ+KIETEAWE+AA EY++L+
Sbjct: 115 IMEGLNKQDKVELH---FKQPKGMVDGNRDTKYDMLRKRQIKIETEAWEEAAKEYQDLIA 171
Query: 217 DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVI 276
D+CEQKLAPNLPYMKSLFLGWF+PLRDAI EQE + + ++A YF LPADMMAVI
Sbjct: 172 DICEQKLAPNLPYMKSLFLGWFQPLRDAIVAEQESVKFKRSSPSHALYFHLLPADMMAVI 231
Query: 277 TMH 279
TMH
Sbjct: 232 TMH 234
>gi|357624513|gb|EHJ75257.1| hypothetical protein KGM_01416 [Danaus plexippus]
Length = 296
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 148/296 (50%), Gaps = 70/296 (23%)
Query: 793 AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVT 852
A +L V RK++KQTVMT+VYGVT GAR QI ++LK+ +E ++ S Y T
Sbjct: 13 AMVLEGFVRRKVIKQTVMTTVYGVTRFGARLQIAKQLKDIDEFPKEY-VWPCSQYLTART 71
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASE-NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ 911
+L EMF + + I W +CAK+I+ + V W TPLGLPV+QPY +
Sbjct: 72 FDSLREMFASTKLIQDWFTDCAKMISGVCGESVEWVTPLGLPVLQPYYRRP--------- 122
Query: 912 ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACD 971
Q ++ +QR AFPPNF+HSLDGSHMM+TA+ C GLTF VHD +WTH
Sbjct: 123 --PAQDTQQRPCTMKQRNAFPPNFIHSLDGSHMMLTALRCGARGLTFVSVHDCFWTHPDT 180
Query: 972 VDEMNR--------------------------------------ILREKFVELYEMPIFE 993
VD+MN+ I RE+FV L+ PI E
Sbjct: 181 VDDMNKLDMMTALNPVQTLPSIADPCTGHSRRGLHRVTGVLGILICREQFVALHSQPILE 240
Query: 994 NLLDSFQK--SFPK-----------------LVFPPLPERGDFDLREVLGSPYFFN 1030
+L D K S+P+ + +PE+GDFD+ VL S YFF+
Sbjct: 241 DLSDFLVKRYSYPESEIEASNVGAANKKRVNALLRRVPEKGDFDINSVLKSVYFFS 296
>gi|291335906|gb|ADD95501.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S08-C41]
Length = 781
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 155/579 (26%), Positives = 252/579 (43%), Gaps = 47/579 (8%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK--QLEPVFEALDTLGNT 517
PML+PP W G +L + VMR + D V+R Q E L+ +
Sbjct: 240 PMLIPPNDWDTERPGG--YLLNEVMRGY------DMVRRGNPLCIQGETPINFLNHIQKV 291
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWK--VRNVKKE 575
+ +N V+ V + + V + +VPLP KP D+ + + ++
Sbjct: 292 AFTLNPFVVDVAQTLMERRVEVGKFVPQVEVPLPPKPADIDDNKDSEMSYRRAAAEAYNY 351
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
N + + C + ++ +D + FY P ++D+RGRAYP+ +L +D + +L+F
Sbjct: 352 NAQAFQRSCRTRMTMNAVEVFQDVDKFYIPWSLDYRGRAYPIPAFLTPQDTDFGKSLLKF 411
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
EG + WL +A Y G+DK + RL +T ++ D I A P W
Sbjct: 412 YEGSFMTPEAEDWLAFQVATTYGRGLDKAPIQERLQWTLDNHDLIESIALDPDGYLHEWE 471
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
A++P+ LA C + + +PV D +C+GLQ + L RD AA VN+
Sbjct: 472 VADEPWTFLAACDEYFHCVIQCDRNH--TSLPVACDATCSGLQILSGLSRDASTAALVNV 529
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
+ E P D Y +A Q P V P+ +R + DRK+VK+ VMT Y
Sbjct: 530 LPSEVPQDAYKVVA----------EQAKPHV-PECIRPYM-----DRKVVKKVVMTVPYN 573
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL-GECA 874
R I+ LKE+G +E+ +L K A+ + +M W+ E A
Sbjct: 574 SKPFSNRSYIRAALKEKGVEVEKDDLTA----TVKAVRDAMNVIVPGPMKVMQWIEQEVA 629
Query: 875 KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVMVKRQRTA 930
I ++W TP G V Q K T++ L QI +KV + A
Sbjct: 630 NAIDRGATSLQWITPSGFTVNQKLMKPTVQTIELQLMGRVQIQVATEGGDKVDRNHHKNA 689
Query: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
PN +HSLD S + ++A+ + + +HDS A D+ ++ I+RE ++ L+
Sbjct: 690 TAPNLIHSLDASLLHLSAL---RFDSPISLIHDSVLCRATDMSVLSNIVRETYMHLFAE- 745
Query: 991 IFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ L++F + PP+ + +V+ S YFF
Sbjct: 746 --HDYLNTFAQYIGAETKPPIIDT--LKPAKVIDSTYFF 780
>gi|291235121|ref|XP_002737494.1| PREDICTED: CG4644-like, partial [Saccoglossus kowalevskii]
Length = 767
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 9/206 (4%)
Query: 662 DKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPET 721
+K S + RL + + +DDI DSAD P G +WW A++P+Q L+ C+ + +A+RS P
Sbjct: 569 EKNSLQERLEYADTIMDDILDSADNPTTGNKWWQTADEPWQTLSCCMEVAKAVRSPDPTK 628
Query: 722 FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ 781
FISH+PVHQDGSCNGLQHYAALGRD +GA VNL + P DVYSG+A +V DA
Sbjct: 629 FISHLPVHQDGSCNGLQHYAALGRDVIGAQQVNLHPFDVPQDVYSGVAQKVEEARAIDAA 688
Query: 782 RDPAVFPDALRAKLLLSQ-VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
+ L+ + L V+RK+VKQTVMT VYGVT G QI ++LK+
Sbjct: 689 -------NGLKIAIELEGFVNRKIVKQTVMTVVYGVTKYGGHRQIVKQLKDL-PDFPGNR 740
Query: 841 LFGASCYAAKVTLTALGEMFQAARGI 866
++ A Y +LGEMF R I
Sbjct: 741 VWAAGGYLVTKVFQSLGEMFTKTREI 766
>gi|302832495|ref|XP_002947812.1| hypothetical protein VOLCADRAFT_47196 [Volvox carteri f.
nagariensis]
gi|300267160|gb|EFJ51345.1| hypothetical protein VOLCADRAFT_47196 [Volvox carteri f.
nagariensis]
Length = 169
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 112/170 (65%), Gaps = 6/170 (3%)
Query: 805 VKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAAR 864
VKQTVMT VYGVT +GAR+QI+ RL+ERG E E + Y +++ ++GE+F
Sbjct: 1 VKQTVMTYVYGVTMMGAREQIENRLEERGW-TNERERRKVASYLSRIIFESMGEVFGPVV 59
Query: 865 GIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEK--- 921
+ +WL +CAK S QPV WT+PLG P+ QPYRKL V T LQ+ R+ +
Sbjct: 60 ALRAWLDDCAKFAVSSGQPVCWTSPLGFPIEQPYRKLPTVQVWTPLQVCITLRDYRRESA 119
Query: 922 --VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
V +RQR FPPN++HSLD +HMMMTA+A R+AG FA VHDS+WTHA
Sbjct: 120 APVDPRRQRNGFPPNYIHSLDSAHMMMTALAVRRAGGVFAAVHDSFWTHA 169
>gi|356507250|ref|XP_003522382.1| PREDICTED: uncharacterized protein LOC100794785 [Glycine max]
Length = 363
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAA 849
++ ++ Q+DRKLVKQTV TSVYGVT++GAR+QIKRRL+E+G +E LF A+CYAA
Sbjct: 28 SISGSMMEEQIDRKLVKQTVRTSVYGVTFVGAREQIKRRLEEKGLITDEKLLFAAACYAA 87
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
KVTLTALGE+F AAR IM WLG+CAK+IA ENQPV WTTPLGLPVVQPY K RH +
Sbjct: 88 KVTLTALGEIFGAARVIMGWLGDCAKVIAFENQPVCWTTPLGLPVVQPYCKTERHLI 144
>gi|372217716|ref|YP_005087397.1| RNA polymerase [Cyanophage 9515-10a]
gi|310005637|gb|ADP00025.1| RNA polymerase [Cyanophage 9515-10a]
Length = 776
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 261/591 (44%), Gaps = 68/591 (11%)
Query: 456 IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQL---EPVFEALD 512
IP+ PML P W+ G +++ + +M+ H + R K L E + L+
Sbjct: 236 IPW-PMLTEPNDWSNEKLGGYYY--NALMKGH-------ELTRRGKSTLTHGELPLKFLN 285
Query: 513 TLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKP----------ETEDEAQL 562
L ++RVNN VL+V D + D +P P ET EA
Sbjct: 286 KLQKVRYRVNNHVLNV-------AHYCKDKEIKVDKFIPIVPAYKPPPPPDIETNKEAH- 337
Query: 563 RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622
+KW+ + RN + + +L A K K E+ FY + D+RGRAYP+ +L
Sbjct: 338 KKWKKETRNAHNADCLNFKRSVRTRAQLETAEKFK-EDVFYLCWSFDYRGRAYPIQAFLT 396
Query: 623 HLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFD 682
+D + ++ FA+ + + WL I +A Y G+DK + + R+A++ ++ + I
Sbjct: 397 PQDTDFGKALIRFADESPVTQDAEDWLAIQVATTY--GLDKATMDERIAWSLDNHELITL 454
Query: 683 SADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
A P W A++P+Q ++ C + T + + V D +C+GLQ A
Sbjct: 455 IATDPTGCIPEWESADEPWQFMSACHEYYHCIIKKDKTT--TGLMVAVDATCSGLQVLAG 512
Query: 743 LGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDR 802
L +D A+ VN+ + P+D Y +A +A++ P+ + S + R
Sbjct: 513 LAKDQSTASLVNVCPADTPSDAYKAVA--------NEAKK---YLPERMH-----SWMTR 556
Query: 803 KLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQA 862
K+TVMT Y T +R IK+ LKE+G + EL ++ +
Sbjct: 557 STCKRTVMTIPYNATKDSSRKYIKQSLKEQGIDPTKDEL----TQVVNAVYQSMDAIVPG 612
Query: 863 ARGIMSWLGE-CAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRE 918
+M W+ + + I + V W TP G V Q K+ V+ L +++L +
Sbjct: 613 PMQVMRWIKQHVGQYIRNGATEVEWVTPSGFTVNQRRDKVNIQRVQLQLLGSIVISLDKG 672
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRI 978
+ R +++ PNF+HSLD S + + ++ F +HDS T A D+ +NR+
Sbjct: 673 SGTPCPIRHKSSTAPNFIHSLDAS---ILHCSFQQFNEPFTVIHDSVLTRAGDMGTLNRL 729
Query: 979 LREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+RE + +++ + L F ++ K PP P G D V S YFF
Sbjct: 730 VRETYTQIFTQDCW---LTRFSETI-KASEPP-PIVGTLDPTVVKDSTYFF 775
>gi|1236342|gb|AAB01083.1| RNA polymerase, partial [Hanusia phi]
Length = 160
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 112/160 (70%), Gaps = 7/160 (4%)
Query: 812 SVYGVTYIGARDQIKRRLKER-GAP----MEEAELFGASCYAAKVTLTALGEMFQAARGI 866
+VYGVT+IGAR+QI RL E G P ++E +L+ AS Y AK+TL ++G +F AR
Sbjct: 1 TVYGVTFIGAREQIYNRLYEAYGIPGTNELQENDLYRASMYLAKLTLASVGNIFVGARKT 60
Query: 867 MSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMV 924
M WL AKI+AS QPVRWTTPLGLPVVQPY K +V+T++Q ++L + E +
Sbjct: 61 MEWLTSVAKIVASTGQPVRWTTPLGLPVVQPYYKETMMSVETAVQNISLLKCDENGPINK 120
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
+QRTAFPPNFVHSLD +H++MTA+ + G FAGVHDS
Sbjct: 121 LKQRTAFPPNFVHSLDSTHLLMTAIEFDRCGKMFAGVHDS 160
>gi|158251728|ref|YP_001504342.1| DNA-directed RNA polymerase [Pleurotus ostreatus]
gi|122893329|gb|ABM67601.1| DNA-directed RNA polymerase [Pleurotus ostreatus]
Length = 1204
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 141/619 (22%), Positives = 266/619 (42%), Gaps = 103/619 (16%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRT--HGAKQQRDTVKRTPKKQLEPVFEALDTLGN 516
+PML P W + G F M + G+ Q +V+ + ++++++ L +
Sbjct: 636 LPMLCKPNLWNEKEYGG-FLDNKEKMNSVITGSIHQNHSVESK-----DELYKSINKLNS 689
Query: 517 TKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKEN 576
K ++NN +L+ L+ S G + + +N + K +T+ L
Sbjct: 690 VKLKINNELLTYLE---SEGLYILNYYFKNKI----KDQTDYNQNL-------------- 728
Query: 577 RERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA 636
I LKL+ + K + Y N D+RGR Y YL++ G DL ++
Sbjct: 729 ---------ITLKLANSYS-KYQNPIYISCNADWRGRIYTQSFYLSYQGGDLSSSLINLF 778
Query: 637 EGRTLGKSGLHWLKIHLANLY-AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
EG +L +SGL++ I+ AN + + K S + R+ + + + D I + + L
Sbjct: 779 EGNSLNESGLNYFYIYGANCHNENDLSKESFDSRINWVKTNYDKIINL------NKDLIL 832
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
KA++ F + C+N+ + + + + +P++ D +C+G+QH ++L D VNL
Sbjct: 833 KADNLFLFTSFCLNMKKIHEDKNTKIY---MPIYLDATCSGIQHVSSLILDLDSGKKVNL 889
Query: 756 VAR---EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
++ +K D+Y+ + + + I + +P +P+ KL RK +K +MT
Sbjct: 890 TSQTKDQKVGDIYTELLKPINLAINQKGIENPEKYPEFRHIKL-----KRKNIKTPIMTK 944
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTAL----------GEMFQ- 861
+Y VT IG DQ++ ++ + + V ++ L E+F+
Sbjct: 945 IYNVTVIGIADQLRNSFEK--VKINNNTYYKVPSSNGSVRISYLDTFEIAQIINNEIFKN 1002
Query: 862 --AARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILT----L 915
+ + + + KI + P+ W TP G+ + Q Y + ++ V S + T L
Sbjct: 1003 LPSLKTVYDYFKSIVKICLMFSIPISWFTPSGVKITQSYTRSIQNKVSISFKNKTKSAIL 1062
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+ T + K+Q A PN + SLD SH+M + +HD + +H ++ +
Sbjct: 1063 REFTGIIDNKKQAQAIIPNIIRSLDASHLMNILNSKELVNYPLLTIHDCFGSHPNNIKLL 1122
Query: 976 NRILREKFVELYEMPIF-------------ENLLDSFQKSFPKLV--------------F 1008
I+ +F+ LY F +N + F+ +LV F
Sbjct: 1123 KNIVILEFINLYANESFLLLFHQRIIQNFKDNQFEFFEDETKQLVIVNPNNKKKIKKVYF 1182
Query: 1009 PPLPERGDFDLREVLGSPY 1027
P LP+ G +L+++L S Y
Sbjct: 1183 PELPKLGKLNLKDILKSEY 1201
>gi|464682|sp|P33539.1|RPOP_AGABT RecName: Full=Probable DNA-directed RNA polymerase
gi|1325997|emb|CAA44799.1| RNA Polymerase [Agaricus bitorquis]
Length = 1102
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 151/587 (25%), Positives = 267/587 (45%), Gaps = 99/587 (16%)
Query: 450 TARHMVIPYMPMLVPPVKWTGYDKGAHF-FLPSYVMRTH--------GAKQQRDTVKRTP 500
T + I +PML P K + G +F ++ S H G RD + +
Sbjct: 468 TVSGINIVQLPMLTEPRKISS--DGLYFPYINSDTTNLHLFEGELIKGKYNLRDHTEAS- 524
Query: 501 KKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE-----KPE 555
E ++ +++ L + K+++N +L+ + W D D L + KP
Sbjct: 525 ----EMLYSSINYLNSIKFKINKAMLNFILAEW----------DNKDSKLFKGYNMLKPI 570
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
E ++ + +K+E +S+ +S+A KD E FY P VDFRGR Y
Sbjct: 571 LETDS---------KEIKEEKVSSNSKYTLYSNIISLASLYKDNE-FYLPVYVDFRGRVY 620
Query: 616 PMHPYLNHLGSDLCRGILEFAEGR-TLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE 674
P+ Y+++ G DL R ++ FA+ + L SG L ++LANL G DKL RL +
Sbjct: 621 PLSNYISYQGGDLARSLILFADTKCVLNNSGKECLNVYLANL--AGYDKLPWSERLTKVD 678
Query: 675 NHLDDIFDSAD----KPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQ 730
+ + +S + K +E K +PFQ +++ + L S+P+ IS+ P+
Sbjct: 679 GIIKEYLESNEISNTKYIEDN--IDKISEPFQFISIM--YAKLLSISNPKANISN-PILF 733
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLVA------REKPADVYSGIAARVLVIIQRDAQRDP 784
D SC+G+QH AAL + A+ VNL + P D Y+ ++ RD
Sbjct: 734 DASCSGIQHIAALTLEKELASNVNLYTDSSNPKEDYPQDFYTYALEKI---------RDK 784
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQ------IKRRLKER------ 832
+ D + + +++RK++K++VMT Y ++ G + +K LK R
Sbjct: 785 LINSDITELRDI--KLNRKIIKRSVMTIPYNISMAGIGEHLMEHFTVKTVLKYRYVVIPG 842
Query: 833 GAPMEEAEL------FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRW 886
A + ++ +G C K+ L + + R + ++ I N P+ W
Sbjct: 843 SATISSKDVYLDYSKYGQLC---KIIYFVLTKELPSLRLLSNYFESMIDIFVKLNIPITW 899
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGS 942
TP GL + K VKTS+ +I T++ T+ + V + +F PNF+HSLD S
Sbjct: 900 VTPSGLKIKYTNIKFKPQKVKTSVLNTSKITTIKLPTDSLDVLSTKRSFMPNFIHSLDAS 959
Query: 943 --HMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
H+++ +V+ + L VHD + + A ++ ++ ++++ F+ +Y
Sbjct: 960 NVHLLLNSVSYK--NLPVYTVHDCFASTANNMFKLEKLVKNAFINIY 1004
>gi|10119854|dbj|BAB13497.1| RNA polymerase [Flammulina velutipes]
Length = 1168
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 132/495 (26%), Positives = 220/495 (44%), Gaps = 81/495 (16%)
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY- 657
E FY + +D+RGR Y LN GSDL +L FAEG L +SG+++ I+LAN +
Sbjct: 686 ENIFYLNNFIDWRGRIYNYSFGLNFQGSDLSSSLLVFAEGEPLNESGIYYFYINLANNHN 745
Query: 658 AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSS 717
+ K S R + + + I + DK L L AE F L++ + L E
Sbjct: 746 ENKLSKKSFVERYNWVVKNYNKIVN-LDKDL-----ILGAEKIFNFLSLALVLREY---D 796
Query: 718 SPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV---AREKPADVYSGIAARVLV 774
+ +I + P+ D +C+G+QH A L ++ A A NL + P D+YS + +V
Sbjct: 797 KDKNYIVNTPIFLDATCSGIQHVAGLIKEFDLATATNLSPANQFDSPNDLYSDVVEKV-- 854
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
+ + + + + + L ++ R+++K+++MT VY VT G +QIK++++
Sbjct: 855 ----NKELNDFGYLNIEYSNLQKVKLTREILKESIMTKVYNVTIYGMTEQIKKKIRFLKD 910
Query: 835 P-MEEAELFGASC--------YAAKVTLTALGE-------------------MFQAARG- 865
P +E E+F + Y KV GE +F+ +G
Sbjct: 911 PYIEREEIFVNNLQKKIQIGKYIYKVPSKIKGEDIILNIKDIYKIAKILNETIFKEYKGL 970
Query: 866 --IMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRET 919
+ S+L AK+ N P+ W TP GL + Q Y K ++ L + L L +T
Sbjct: 971 EKVYSFLKSMAKLTNKLNIPLNWITPAGLDITQKYNKTKTSSISIKLFGRTKQLNLTEKT 1030
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVDEMNRI 978
+++ +Q A PN +HSLD SH+ + RK + VHD + TH + ++
Sbjct: 1031 DELNTFKQELAIIPNVIHSLDASHLYEIILETRKNNINNILAVHDCFGTHPNKMGDLIHA 1090
Query: 979 LREKFVELY----------------------EMPIFEN----LLDSFQKSFPKLVFPPLP 1012
+R+ F+ Y + I N +L+S+ + P
Sbjct: 1091 VRKTFIIQYTDLNFLNKFRDRIIQSIKDHNFNIKIINNDEVVVLNSYTSKEIYITIEKAP 1150
Query: 1013 ERGDFDLREVLGSPY 1027
GDFDL+++ S Y
Sbjct: 1151 VLGDFDLKQIEKSQY 1165
>gi|260878769|ref|ZP_05891124.1| putative DNA-directed RNA polymerase, bacteriophage type [Vibrio
parahaemolyticus AN-5034]
gi|308091103|gb|EFO40798.1| putative DNA-directed RNA polymerase, bacteriophage type [Vibrio
parahaemolyticus AN-5034]
Length = 724
Score = 162 bits (410), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 167/686 (24%), Positives = 277/686 (40%), Gaps = 137/686 (19%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALD---TLG 515
+PM+VPPV+W +L SY + + R+ +K+ + + LD
Sbjct: 33 LPMVVPPVEWKMGMTDGGAYLTSYSPLSLFKTRNRELLKQLREVKSPEFVHFLDGHNVAS 92
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRND----VPLPE------------KPETEDE 559
T ++ L++L I + A L + ND +PL E KP+
Sbjct: 93 RTGHCIDVETLNLLKMIVKQPRKFAKLPNFNDEEAEMPLMEADLRTAQMILESKPKNISN 152
Query: 560 AQLRK---------------WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYY 604
+ K W+ K + +++ E+ R ++ + +A +K + Y+
Sbjct: 153 HEYLKRLDGEHKVIVKALIDWRKKTQKARQKAVEKAGARSNLLRTIEIAESLKHYKSIYF 212
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKL 664
P D RGR Y P LN G+D + ++ F E + +GK+G W++I++ANL G DK
Sbjct: 213 PTQSDDRGRVYYATPLLNPQGADHEKALILFDEAKEVGKTGWDWMRINVANLM--GYDKA 270
Query: 665 SHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
+ + R+A+ E H + I P+ R W + PFQ L L +A P F S
Sbjct: 271 NFKKRIAYVEAHREMIESCVANPMSDFR-WEDTDKPFQFLQAARELVKAWSMEDPTKFKS 329
Query: 725 HIPVHQDGSCNGLQHYAALGR-------DTLGAAAVNLVAREKPADVYSGIAARVLVIIQ 777
+ + D SC+GLQ L R A V+ E D+Y G AAR+ +
Sbjct: 330 RVGIACDASCSGLQILGTLTRCESSMKFTNCLPAEVDENGEEFMQDIY-GEAARIAADLM 388
Query: 778 RDAQ---------------------RDPAVFPDALRAKLLLSQVDRKLVK---------- 806
R +DP +A R L++++ ++ K
Sbjct: 389 RKVAKGEKEARKYREADYEIKGRPLKDPQ--KEAERVAKQLAKIEDQIAKDEEQRKADRE 446
Query: 807 ------------------------QTVMTSVYGVTYIGARDQ------------IKRRLK 830
+ MT YG G RDQ + +
Sbjct: 447 HAEKLLNWSYAMKDEYSFTRNWLKRNTMTFFYGSAQFGMRDQLIVDHLEPEYNKVIEVVG 506
Query: 831 ERGAP---------MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
+ G P +++A+ A+ A + A+ M + +M L A++IA
Sbjct: 507 KEGDPTSLGFPWATLKDAK--DAATVAGNINYDAICAMAERPSRVMQSLQRYAELIAKSG 564
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSL-----QILTLQRETEKVMVKRQRTAFPPNFV 936
+ +RWTTPLGL V Q Y K+ ++ + + + T QR T +V Q+ PN+V
Sbjct: 565 KKMRWTTPLGLIVEQRYEKVEKYKIDSMITGQKRMQTTTQRSTGEVDANGQKNGAAPNWV 624
Query: 937 HSLDGSHMM-MTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF-- 992
HSLD S ++ + +V +K GL + VHDS+ HA D + M +L+ ++ + +
Sbjct: 625 HSLDASLLLKVLSVGFKKYGLKHWRVVHDSFAVHAADTETMVTLLKNTMADMLDRDLLKR 684
Query: 993 --ENLLDSFQKSFPKLVFPPLPERGD 1016
E L + + K + P PE GD
Sbjct: 685 TAEELEAQIDEEYRKDII-PFPELGD 709
>gi|451989257|gb|AGF91727.1| RNA polymerase [Synechococcus phage S-CBP4]
Length = 792
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 159/691 (23%), Positives = 289/691 (41%), Gaps = 90/691 (13%)
Query: 358 QKLPAVRRIVKGQD-DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAF 416
KL +++ ++ +D + WG++AR ++G +++ + T+ F
Sbjct: 156 NKLTSIQSLMSRRDIKWSHWGREARVRIGVWMLDCIIDTS-----------------GWF 198
Query: 417 THALRTVSKETKGGSKKYGVIECNPLVLKGLERTA--RHMVIPYM-PMLVPPVKWTGYDK 473
T +R G + I P L+ ++ + P PML+ P WT
Sbjct: 199 TREVRN------EGRNRISYIVPTPEFLRIKDKVMDDAELFAPLAWPMLIEPNNWTNDRA 252
Query: 474 GAHFFLPSYVMRTHGAKQQRDTVKRTPKK--QLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
G +L + VMR H V+R Q E + L+ + + +N ++ V +
Sbjct: 253 GG--YLLNEVMRGH------HMVRRGNHGCIQGETPIDFLNKIQKVAFTLNPFIVEVAED 304
Query: 532 IWSCG---GRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+ G G+ +V+ + P P E+E ++++ ++ VK + + C +
Sbjct: 305 LARLGRPVGKFLPVVNHAEPPKPFDI-AENEESRKQYKRAMKQVKDLQYQESKKSCRTRM 363
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+ + KD F+ P + D+RGRAYP+ +L +D + +L FA+G + W
Sbjct: 364 TMEAVNRFKDVPKFFIPWSFDYRGRAYPIPAFLTPQDTDFGKSLLIFADGSYMTPEAEDW 423
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
L +A + G+DK RL + N+ + A P+ W E+P+Q LA
Sbjct: 424 LAFQVATTF--GLDKAPMTERLEWARNNHELFTLIATDPVRNLPLWEGVEEPWQFLAAAE 481
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
+ ++ + + + V D +C+GLQ A L RD A VN++ +KP D Y +
Sbjct: 482 EYYHCVVAADRQ--FTRLMVATDATCSGLQILAGLARDKSTARLVNVLPGDKPQDAYKVV 539
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A+ P++++ + DRK VK+ VMT Y R I+
Sbjct: 540 -----------AEEAAPHCPESIQPYM-----DRKTVKRVVMTVPYNAKPFSNRGYIRDA 583
Query: 829 LKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL-GECAKIIASENQPVRWT 887
L E+G +++ +L K A+ + +MSW+ E A I + + + W
Sbjct: 584 LAEKGVEIDKDDL----TKTVKAVRNAMDVVVPGPMAVMSWIEQEVANAIKAGKEFLEWV 639
Query: 888 TPLGLPV----------VQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVH 937
TP G V + LGR + ++ ++++V + + A PN +H
Sbjct: 640 TPSGFVVHQKLNKKLLVKLQLQLLGRCEMSVAVD------DSDEVDLNHHKNATAPNLIH 693
Query: 938 SLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLD 997
SLD S + ++ + + A +HDS A D+ ++ I+RE ++ L+ + L
Sbjct: 694 SLDASLLHLSVL---RFNAPIALIHDSVLCRATDMSTLSSIVRETYMHLFAE---HDYLR 747
Query: 998 SFQKSFPKLVFPPLPERGDFDLREVLGSPYF 1028
F PP+ GD + V+ S YF
Sbjct: 748 DFASHIGAETEPPI--VGDLEPESVIESTYF 776
>gi|328786523|ref|XP_003250805.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Apis
mellifera]
Length = 178
Score = 160 bits (404), Expect = 4e-36, Method: Composition-based stats.
Identities = 84/190 (44%), Positives = 109/190 (57%), Gaps = 30/190 (15%)
Query: 859 MFQAARGIMSWLGECAKIIAS---ENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
MF++AR I W ECA+II+S EN V W TPLGLP++QPY K VK + + T+
Sbjct: 1 MFKSAREIQDWFTECARIISSICCEN--VEWITPLGLPIIQPYTKKLNKYVKINGKCDTI 58
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
+QR AF PNF+HSLD +HMM+T++ C +TF VHD +WTH C VD M
Sbjct: 59 ----------KQRNAFAPNFIHSLDSTHMMLTSLHCNSQNITFVSVHDCFWTHPCTVDAM 108
Query: 976 NRILREKFVELYEMPIFENLLDSFQK---SFPKLV------------FPPLPERGDFDLR 1020
N+I RE+FV L+ PI E+L F K SF K + +P +G FD+
Sbjct: 109 NKICREQFVTLHSNPILEDLSKFFIKRYLSFYKELNYETDLKKIHKCLSNIPSKGTFDIH 168
Query: 1021 EVLGSPYFFN 1030
VL S YFFN
Sbjct: 169 NVLSSTYFFN 178
>gi|133454|sp|P22372.1|RPOP_CLAPU RecName: Full=Probable DNA-directed RNA polymerase; AltName:
Full=ORF2
Length = 936
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 153/667 (22%), Positives = 292/667 (43%), Gaps = 102/667 (15%)
Query: 371 DDFKPWGQDA-RAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKG 429
+D K + DA +G+++IE+L ++ + + D +H++ T+++E
Sbjct: 249 EDNKMFFDDAFYLHLGAKLIEILIESDLLALTLVKFKDE--------SHSVLTLTEEVAK 300
Query: 430 GSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLP-SYVMRTHG 488
I N +VL L+ +PM+V P ++ + G + Y+
Sbjct: 301 A------IPTNKVVLAPLK----------LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLT 344
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL--DRIWSCGGRLADLVDRN 546
K + + R +K + ++E+++ + T +++N ++L L D ++S +L
Sbjct: 345 KKLNMNDISRIQEKNI--IYESINKMMATAFQINKKLLKYLLEDYVFSKLLKLEG----- 397
Query: 547 DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK----LSVARKMKDEEGF 602
D+ Q ++ N+ K + +++ Q +L + +A ++
Sbjct: 398 -----------DDLYKNITQIEIDNMDKRDNQKYQQYLSQKLLRDYIIDIATVFQNVPEL 446
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS---GLHWLKIHLANLYAG 659
Y+P +D RGR YP+ Y ++ S+L + +L FA T+ +S + +LK + A +
Sbjct: 447 YFPLKLDHRGRLYPITAYFHYQSSELAKALLLFAIPDTIERSDSISIDYLKAYGATCFGN 506
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN---LTEALRS 716
+DK S++ RL + + + ++I + + L AE+ F LA C+ L + L
Sbjct: 507 KLDKKSYDKRLQWVDANWENIINYRNNVLLEL-----AENKFMFLAYCLEIERLNQFLND 561
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK---PADVYSGIAAR-- 771
S E F +++P+ DG+CNG QH L + + +NL + K P+D YS + +
Sbjct: 562 DSIENFKTYLPLQLDGTCNGFQHIVLLSNEVKLYSQLNLDGKSKNQDPSDFYSFMINQLN 621
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG------------VTYI 819
+ ++ ++D D R L+ + R +KQ +MT Y I
Sbjct: 622 IHLLNKKDVSTDKEDIESYDR--LINLGLSRANIKQAIMTKPYNAKDFTVAKYIIETLLI 679
Query: 820 GARDQIKRRLKERGAPMEEA------ELFGASCY-----AAKVTLTALGEMFQAARGIMS 868
+ D + + E+G E + +C+ AK L + + ++
Sbjct: 680 ASED---KYIDEKGITRTECWYKVNETMTNVACFRDIYLLAKCINEILFLNYPQIKSLLE 736
Query: 869 WLGECAKIIASENQPVRWTTPLGLPVVQPY--RKLGRHTVKTSLQILTLQRETEKVMVK- 925
+L ++I+ N P+ W+ P GL V Q Y KL + T L + T+K+ +
Sbjct: 737 YLNSISEIMLKLNLPITWSLPTGLEVHQQYMRSKLKKTKPYTYLDTSLTLKITDKIKMDK 796
Query: 926 -RQRTAFPPNFVHSLDGSHMMMTAVACRKA----GLTFAGVHDSYWTHACDVDEMNRILR 980
+Q+ A PN +HSLD + ++M A K+ + F VHD Y A +D + LR
Sbjct: 797 VKQQIALMPNLIHSLDAASLIMLYFAFNKSIGSGVVNFYSVHDCYGVTAKYIDLLISQLR 856
Query: 981 EKFVELY 987
++ELY
Sbjct: 857 AVYIELY 863
>gi|224102445|ref|XP_002334173.1| predicted protein [Populus trichocarpa]
gi|222869927|gb|EEF07058.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/123 (61%), Positives = 95/123 (77%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
KY +L+ RQ++ ETEAWE+ A EY L+ +MCE+KLAPNLPY+KSLFLGWFEPL++AI +
Sbjct: 38 KYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIER 97
Query: 248 EQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAI 307
EQ+ + K K A++P + LPAD MAVI MHK+MGL+M G E G RVVQAA IG AI
Sbjct: 98 EQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAI 157
Query: 308 EQE 310
EQE
Sbjct: 158 EQE 160
>gi|262155779|ref|ZP_06028902.1| DNA-directed RNA polymerase [Vibrio cholerae INDRE 91/1]
gi|379741344|ref|YP_005333313.1| DNA-directed RNA polymerase [Vibrio cholerae IEC224]
gi|421332625|ref|ZP_15783103.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1046(19)]
gi|424601712|ref|ZP_18040858.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1047(20)]
gi|262030370|gb|EEY49011.1| DNA-directed RNA polymerase [Vibrio cholerae INDRE 91/1]
gi|378794854|gb|AFC58325.1| DNA-directed RNA polymerase [Vibrio cholerae IEC224]
gi|395929232|gb|EJH39982.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1046(19)]
gi|395976865|gb|EJH86304.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1047(20)]
Length = 758
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 143/556 (25%), Positives = 231/556 (41%), Gaps = 101/556 (18%)
Query: 566 QWKVRNVKKENR--ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNH 623
QW+ K R E+ R ++ + +A +K Y+P D RGR Y P LN
Sbjct: 208 QWRTAKQKARQRSVEQAGARSNLMRTIEIADSLKMYTSIYFPTQSDDRGRVYYATPLLNP 267
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
G+D + ++ F + +GK+G WL+I+++NL G DK + + R+A+ E H D I
Sbjct: 268 QGADHEKALILFDVAKEIGKTGWDWLRINVSNLM--GYDKGNFKQRIAYVEAHRDMIESC 325
Query: 684 ADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAAL 743
P+ R W + PFQ L L +A + P F S + + D SC+GLQ L
Sbjct: 326 VANPMSDYR-WEHTDKPFQFLQAARELVQAWKMEDPTKFKSRVGIACDASCSGLQILGTL 384
Query: 744 GR-------DTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ--------------- 781
R A V+ E D+Y G AAR+ + R Q
Sbjct: 385 TRCESSMKFTNCLPAEVDENGEEFMQDIY-GEAARIAAELMRKVQLGELEARKYNEYEVT 443
Query: 782 ----RDPAVFPDALRAKLLLSQVD----------------------------------RK 803
+DPA +A R L++++ R
Sbjct: 444 GRPLKDPA--KEAQRIAKQLAKIEKQKAKDEAQRKADREHAEKLLNWSYAMKDEYSFTRN 501
Query: 804 LVKQTVMTSVYGVTYIGARDQI---------KRRLKERG------------APMEEAELF 842
+K+ MT YG G RDQ+ + ++ G A +++A+
Sbjct: 502 WLKRNTMTFFYGSAQFGMRDQLIVDHLEPEFNKVIEVVGKDGDPTSLGFPWATLKDAK-- 559
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
A+ A + A+ +M + +M L A++IA + +RWTTPLGL V Q Y K+
Sbjct: 560 DAATVAGNINYEAICKMAERPARVMQSLQRYAELIAKSGRKMRWTTPLGLIVEQRYEKVE 619
Query: 903 RHTVKTSLQ-----ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMM-MTAVACRKAGL 956
+ V + + T QR T +V Q+ PN+VHSLD S ++ + ++ + GL
Sbjct: 620 KFKVDSMITGQKRIQTTSQRHTGEVDANGQKNGAAPNWVHSLDASLLLKVLSLGSKNHGL 679
Query: 957 T-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV---FPPLP 1012
+ VHDS+ HA D + M +L+ ++ + + + + + + P P
Sbjct: 680 NHWRIVHDSFAVHAADTETMVTLLKNTMADMLDRDLLKRTAEELEAQIDEEYRDQIIPFP 739
Query: 1013 ERGDFDLREVLGSPYF 1028
E GD L + L S +
Sbjct: 740 ELGDEALIDKLRSAQY 755
>gi|1236332|gb|AAB01078.1| T3/T7-like RNA polymerase, partial [Isochrysis sp.]
Length = 161
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 106/161 (65%), Gaps = 8/161 (4%)
Query: 812 SVYGVTYIGARDQIKRRLKE----RGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIM 867
+VYGVT++GARDQI+RRL+E + ++ + Y A++TL +LGE+F+ A M
Sbjct: 1 TVYGVTFVGARDQIERRLRELPELKAEIADDRRFTELATYCARLTLASLGEVFEPAMVAM 60
Query: 868 SWLGECAKIIASENQ-PVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRE---TEKVM 923
WL A+II ++Q PV WTTPLGLPVVQPY K +KT LQ + L ++
Sbjct: 61 DWLAHGARIIGKDSQAPVEWTTPLGLPVVQPYHKPLNKPIKTILQCMNLADSADPSQPAD 120
Query: 924 VKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
V+RQ A PPN+VHSLD SHM+MTA ACR+ G+ FA VHDS
Sbjct: 121 VRRQVMALPPNYVHSLDSSHMLMTASACRQEGIAFAAVHDS 161
>gi|13811419|gb|AAK40111.1| DNA polymerase [Pleurotus ostreatus]
Length = 993
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 148/608 (24%), Positives = 262/608 (43%), Gaps = 122/608 (20%)
Query: 447 LERTARHMVI--PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQL 504
LE +++I +PM+ P W+ G FL + R D + + L
Sbjct: 400 LEEIKENIIINPSTLPMICKPNFWSENSYGG--FLENENKRIDVITGSSDHKHKIENRNL 457
Query: 505 EPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK 564
+++ ++ + +TK+ +NN L + I + G L + + + EDE Q
Sbjct: 458 --LYKVINLVSSTKFSINNLFL---NYIKNEGNYLLNEI-----------KAEDEMQ--- 498
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHL 624
R I LK+S + FY + D+RGR Y ++ +
Sbjct: 499 ------------------RI-ITLKVS---ETFSNTPFYLNVHADWRGRIYTKSFFITYQ 536
Query: 625 GSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY-AGGVDKLSHEGRLAFTENHLDDIFDS 683
G DL +LEF +G + + G ++L I+ AN + + K S+ R+ + + D I +
Sbjct: 537 GGDLTTALLEFFDGEPINEKGKYYLYIYGANNHNMNKISKASYIDRINWVNQNYDKIIN- 595
Query: 684 ADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAAL 743
DK L L A++PF C+N+ E ++ + F+ PV D +C+G+QH AA+
Sbjct: 596 LDKDL-----ILSADNPFTFATFCLNMREIHKNPN---FVLKTPVFLDATCSGIQHLAAM 647
Query: 744 GRDTLGAAAVNL---VAREKPADVYSGIAARVLVIIQR--DAQRDPAVFPDALRAKLLLS 798
+D + VNL +++P D+Y I + I + + + F +
Sbjct: 648 LQDIELGSNVNLKKQYEKDEPGDLYEQITLPINKAINNLGEENNEYSHFKNI-------- 699
Query: 799 QVDRKLVKQTVMTSVYGVTYIGARDQIKRR-LKERGAPME-----------------EAE 840
+++R ++K+++MT VY V+ G +Q+K + L E+ +E ++
Sbjct: 700 KLNRNILKRSIMTKVYNVSQFGIAEQLKEKFLNEKKEKLETNVNLISKALSLDIYKIQSN 759
Query: 841 LFGASCYAA-----KVTLTALGEMFQAA--------------RGIMSWLGECAKIIASEN 881
YAA K+ + ++F+ A I S+ K+I N
Sbjct: 760 FSSLKKYAAPGKDGKIIPLSTKDIFKIATIINDQIFVIYPSLNDIYSYFLNITKLILKLN 819
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK---------RQRTAFP 932
P+ W TP GL + Q Y K R+ V + L +T+K+++K +Q+ A
Sbjct: 820 IPLTWFTPNGLKITQHYLKSKRNIVS-----IRLFGQTKKMVIKEWDNLLNTQKQKQAII 874
Query: 933 PNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
PN +HSLD SH+M + VHD + TH +D++ I++++FV LY
Sbjct: 875 PNIIHSLDASHLMNVIYNNKNNKFNIITVHDCFGTHPNYMDQLEDIVKKEFVLLYSQ--- 931
Query: 993 ENLLDSFQ 1000
E L++F
Sbjct: 932 EKFLETFH 939
>gi|449682634|ref|XP_004210133.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Hydra
magnipapillata]
Length = 645
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 159/274 (58%), Gaps = 10/274 (3%)
Query: 422 TVSKETKGGSKKYGVIECNPLVLKGLERTARHM-----VIPYMPMLVPPVKWTGYDKGAH 476
V + G K G+++ +PL+ + + + +PM++PP W GA+
Sbjct: 331 VVHSHNQDGYKLIGIMKVHPLISRLWHSYLNQLGEISFEVNKLPMVMPPRPWVSLTSGAY 390
Query: 477 FFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC 535
L S +RT G + + K + + QL +F++L+ LGN W+VN ++L ++ +++
Sbjct: 391 LLLHSDFVRTVSGQYKLHELSKASKEGQLSRIFDSLNYLGNCGWKVNTKILDIMLEMFNN 450
Query: 536 GGRLA-DLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
G + D++ + + + ED + K R KK + E + R D+ KLS++
Sbjct: 451 KGDMKLDIIGPIETMMQQYDYKEDMTAIDKKT-NKRLKKKLHHELFALRMDLLYKLSISN 509
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
+D+ F+ P+N+DFRGRAYP+ P+ +H+GSD RG+L FA+G+ LG++GL+W+K+HL
Sbjct: 510 HYRDK-IFWIPNNLDFRGRAYPIAPHCSHIGSDAARGLLLFAKGKKLGENGLNWIKVHLV 568
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
N++ G + K S + R+ + +NHL++I DSADKPL
Sbjct: 569 NVH-GHLKKSSLKERIEYADNHLEEIMDSADKPL 601
>gi|320156443|ref|YP_004188822.1| DNA-directed RNA polymerase [Vibrio vulnificus MO6-24/O]
gi|319931755|gb|ADV86619.1| DNA-directed RNA polymerase [Vibrio vulnificus MO6-24/O]
Length = 758
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 142/556 (25%), Positives = 231/556 (41%), Gaps = 101/556 (18%)
Query: 566 QWKVRNVKKENR--ERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNH 623
QW+ K R E+ R ++ + +A +K Y+P D RGR Y P LN
Sbjct: 208 QWRTAKQKARQRSVEQAGARSNLMRTIEIADSLKMYTSIYFPTQSDDRGRVYYATPLLNP 267
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDS 683
G+D + ++ F + +GK+G WL+I+++NL G DK + + R+A+ E H + I
Sbjct: 268 QGADHEKALILFDVAKEIGKTGWDWLRINVSNLM--GYDKGNFKKRIAYVEAHREMIESC 325
Query: 684 ADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAAL 743
P+ R W + PFQ L L +A + P F S + + D SC+GLQ L
Sbjct: 326 VANPMSDYR-WEHTDKPFQFLQAARELVQAWKMEDPTKFKSRVGIACDASCSGLQILGTL 384
Query: 744 GR-------DTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQ--------------- 781
R A V+ E D+Y G AAR+ + R Q
Sbjct: 385 TRCESSMKFTNCLPAEVDENGEEFMQDIY-GEAARIAAELMRKVQLGELEARKYNEYEVT 443
Query: 782 ----RDPAVFPDALRAKLLLSQVD----------------------------------RK 803
+DPA +A R L++++ R
Sbjct: 444 GRPLKDPA--KEAQRIAKQLAKIEKQKAKDEAQRKADREHAEKLLNWSYAMKDEYSFTRN 501
Query: 804 LVKQTVMTSVYGVTYIGARDQI---------KRRLKERG------------APMEEAELF 842
+K+ MT YG G RDQ+ + ++ G A +++A+
Sbjct: 502 WLKRNTMTFFYGSAQFGMRDQLIVDHLEPEFNKVIEVVGKDGDPTSLGFPWATLKDAK-- 559
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
A+ A + A+ +M + +M L A++IA + +RWTTPLGL V Q Y K+
Sbjct: 560 DAATVAGNINYEAICKMAERPARVMQSLQRYAELIAKSGRKMRWTTPLGLIVEQRYEKVE 619
Query: 903 RHTVKTSLQ-----ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMM-MTAVACRKAGL 956
+ V + + T QR T +V Q+ PN+VHSLD S ++ + ++ + GL
Sbjct: 620 KFKVDSMITGQKRIQTTSQRPTGEVDANGQKNGAAPNWVHSLDASLLLKVLSLGSKNHGL 679
Query: 957 T-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV---FPPLP 1012
+ VHDS+ HA D + M +L+ ++ + + + + + + P P
Sbjct: 680 NHWRIVHDSFAVHAADTETMVTLLKNTMADMLDRDLLKRTAEELEAQIDEEYRDQIIPFP 739
Query: 1013 ERGDFDLREVLGSPYF 1028
E GD L + L S +
Sbjct: 740 ELGDEALIDKLRSAQY 755
>gi|238578850|ref|XP_002388856.1| hypothetical protein MPER_12082 [Moniliophthora perniciosa FA553]
gi|215450527|gb|EEB89786.1| hypothetical protein MPER_12082 [Moniliophthora perniciosa FA553]
Length = 317
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 42/208 (20%)
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA----------------SEN------ 881
AS Y AKV L +G++F A+ I +WL CA++I+ S+N
Sbjct: 2 ASAYLAKVVLGCIGDLFTGAKDIQNWLNMCARLISKAIPGERLYEAMEEVKSKNVKAEGR 61
Query: 882 ------------------QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQ--RETEK 921
V WTTPLGLP+VQPYRK R + T++Q + + +
Sbjct: 62 GRKAGKVLTFDFLKREQMNSVVWTTPLGLPIVQPYRKPKRRQIMTAMQTVYISDPNTVAE 121
Query: 922 VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILRE 981
V +Q +AFPPNF+HSLD +HMM+TA+ C+ G+TFA VHDSYWTHA +DEM+ I+R+
Sbjct: 122 VNTAKQASAFPPNFIHSLDATHMMLTALECQTRGMTFAAVHDSYWTHASCIDEMSGIIRD 181
Query: 982 KFVELYEMPIFENLLDSFQKSFPKLVFP 1009
F+ L+ + L D F++ + P
Sbjct: 182 TFIALHSSDVLSKLNDEFRERYKNYKIP 209
>gi|1236348|gb|AAB01086.1| RNA polymerase, partial [Tetrahymena pyriformis]
Length = 155
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 108/156 (69%), Gaps = 4/156 (2%)
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
SVYGVT++GAR QI ++L+++ EE E + AS Y A+ TL + ++F +A I WL
Sbjct: 1 SVYGVTFVGARKQIYKQLRDKDFLTEE-ESYEASYYLAQTTLDCIKDLFSSAHYIKKWLI 59
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGR-HTVKTSLQILTLQRETEKVMV--KRQR 928
+CA +IA+ + PV W TP+GLPVVQPYR G + T +Q + ++ +++++ + +QR
Sbjct: 60 DCAGLIANTSNPVSWITPMGLPVVQPYRSKGSLDVINTVIQKIAIESDSDRLPINKSKQR 119
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
+AFPPNF+HSLD +H+M TA+ C K G+ FA VHDS
Sbjct: 120 SAFPPNFIHSLDSTHLMYTAMECIKRGMHFAAVHDS 155
>gi|1236338|gb|AAB01081.1| T3/T7-like RNA polymerase, partial [Thraustochytrium aureum]
Length = 180
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 103/180 (57%), Gaps = 27/180 (15%)
Query: 812 SVYGVTYIGARDQIKRRLKE-------------------------RGAPMEEAELFGASC 846
SVYGVT++GAR QI RL+E G + +L AS
Sbjct: 1 SVYGVTFVGARAQILPRLEEINDKNIYLENELKKPEGMRDPDLTQPGTVFDRDQLNAASY 60
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV 906
Y A+VTL ++GE FQ+A I WLG+ AKI QPV W TPLGLPVVQPY+ + V
Sbjct: 61 YLARVTLKSIGETFQSANEIQHWLGQLAKICTDSGQPVSWVTPLGLPVVQPYKHGAKQQV 120
Query: 907 KTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
T++Q + ++ + V +QR AFPPNFVHS+D +HM+MTA AC K G+ F VHDS
Sbjct: 121 HTAMQTVVVREFIDDSPVHKVKQRNAFPPNFVHSIDSTHMLMTARACEKQGIAFTAVHDS 180
>gi|402580131|gb|EJW74081.1| hypothetical protein WUBG_15011, partial [Wuchereria bancrofti]
Length = 250
Score = 153 bits (387), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 132/235 (56%), Gaps = 21/235 (8%)
Query: 502 KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD---------LVDRNDVPLPE 552
KQ PVF+AL+ LG T W++N VL V +++ AD + + VP+P+
Sbjct: 1 KQARPVFDALNDLGITPWKINEPVLDVALKVFEMAQTNADEKFLEKLSIPIHPSRVPIPD 60
Query: 553 K-----PETEDEAQLRKW----QWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
DE + W + K +KK N E +S C + +L++A K +
Sbjct: 61 YVVKFGNMEIDELPITDWREYSKAKYEAMKKRN-ELNSLWCWLLYRLTMANHFKGSV-LF 118
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK 663
+PH++DFRGR YP+ PYLNH+G DL R +L FAEGR LG GL WLK+H NL G + K
Sbjct: 119 FPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDGLRWLKLHCINL-TGILKK 177
Query: 664 LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSS 718
S+ R+A+ + L I +SA+ PL G WW K+E+P+Q L+ CI + AL++ +
Sbjct: 178 ESNFSRVAYADEMLPKILESANNPLSGEMWWTKSEEPWQTLSACIEIRNALQTGN 232
>gi|291335377|gb|ADD94991.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
Length = 662
Score = 152 bits (385), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 233/554 (42%), Gaps = 65/554 (11%)
Query: 357 KQKLPAVRRIVKGQD--DFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 414
+QKL +R ++ D + WG R K+G +++ + Q++
Sbjct: 155 QQKLVVIRTLMNRYDVKQWTTWGSSNRIKLGGWLLDCIMQSS-----------------G 197
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR--HMVIPYM-PMLVPPVKWTGY 471
FT ++ + G K+ + P L+ ++ R + P PML+ P W +
Sbjct: 198 WFTKDMQ------QQGRKRVQYVIPTPEFLEIKDQVMRDAELFSPLAWPMLIEPNDWE-H 250
Query: 472 DKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV--- 528
D+ + L + VMR H ++ D K LE L+ + +R+N ++ V
Sbjct: 251 DRCGGYIL-NEVMRGHDMVRRGDPTSIQGDKPLE----FLNKIQKVAYRLNPFIVGVAEE 305
Query: 529 LDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
LDR+ G+ ++ P P E DE++ + ++ V + + C +
Sbjct: 306 LDRLERAVGKFLPIIHHELPPKPVDIEENDESR-KSYRRNCAEVHNLQAQEFRKSCRTRM 364
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+ + KD + FY P + D+RGRAYP+ +L +D + +L FA+ + W
Sbjct: 365 TMEAVARFKDRDKFYIPWSFDYRGRAYPIPAFLTPQDTDFGKSLLMFAKASFMTPKAEDW 424
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
L +A Y G+DK RL + +N+ I A P+ W A++P+Q LA C
Sbjct: 425 LAFQVATTY--GLDKAPMRERLDWVKNNTHLISCVASDPILHIHEWEAADEPWQFLAACE 482
Query: 709 NLTEA-LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSG 767
L+ ET + D +C+GLQ A L RD A VN++ ++P D Y
Sbjct: 483 EYYHCVLKCDRQET---RAMIATDATCSGLQILAGLARDRNTAQLVNVLPSDRPQDAYKV 539
Query: 768 IAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKR 827
+A Q P P ++R + DRK VK+ VMT Y R IK
Sbjct: 540 VA----------EQASPHC-PKSIRPYM-----DRKTVKRVVMTVPYNAKPFSNRGYIKD 583
Query: 828 RLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL-GECAKIIASENQPVRW 886
LKE+G +++ +L A+ E+ +MSW+ E +K I + W
Sbjct: 584 ALKEKGVEIDKDDL----TKTVAAVRNAMDEVVPGPMAVMSWIESEVSKAIDRGKTELTW 639
Query: 887 TTPLGLPVVQPYRK 900
TTP G V Q K
Sbjct: 640 TTPSGFVVTQKLMK 653
>gi|2330562|emb|CAA74929.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 282
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 95/125 (76%), Gaps = 2/125 (1%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K+ L+ RQVK ETEAWE+ +EYR+L +MCE+ LAPNLPY+K +FLGWF+PL+D I +
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217
Query: 248 EQ--ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
EQ ++ + K + AYAP+ + LPAD MAVI MHK+MGL+M+G E G +VVQAA IG
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGI 277
Query: 306 AIEQE 310
AIEQE
Sbjct: 278 AIEQE 282
>gi|224114325|ref|XP_002332398.1| predicted protein [Populus trichocarpa]
gi|222832721|gb|EEE71198.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 91/119 (76%), Gaps = 3/119 (2%)
Query: 273 MAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKN--KE 330
M+VI MH+L ++MTGGEHG ARV AAC+IGDAIEQE+RIH LEKT+KK E N K
Sbjct: 1 MSVIAMHQLAAMVMTGGEHGCARVGTAACMIGDAIEQEIRIHNILEKTRKKKEKANDSKN 60
Query: 331 DEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVI 389
EG ES V EQE LRKKVTDLIKKQKLPAVR+IVK +DD KPW DARAKV + +I
Sbjct: 61 GVEG-ESPAVMKEQENLRKKVTDLIKKQKLPAVRKIVKAKDDSKPWNADARAKVITILI 118
>gi|169646973|ref|YP_001718359.1| RNA polymerase [Fusarium proliferatum]
gi|149131940|gb|ABR20838.1| RNA polymerase [Fusarium proliferatum]
Length = 1062
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 141/586 (24%), Positives = 254/586 (43%), Gaps = 72/586 (12%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK--QLEP---VFEALDT 513
+PM+V P ++T G Y++ + T K KK +++P ++ ++
Sbjct: 447 LPMIVKPKEYTITKLGG------YLLNDVEYSEPLFTSKIAYKKSSEVDPKGELYSIINN 500
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVK 573
+ T +++N +L D + + ++D N K + + + RK+Q
Sbjct: 501 MMKTPFKINKELL---DYLVLNNDKHKLIIDSNKEHEYSKIKNRTKIEERKFQ------- 550
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
+ S++ + L +A KD Y+P +D RGR YP YLN+ GS+L + +L
Sbjct: 551 ----QFMSEKMLEQYILKIANTFKDVPEIYFPIMLDNRGRLYPRPAYLNYQGSELAKSLL 606
Query: 634 EFAEGRTLGK---SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
FA + + S + +L + Y G++K S+E R+ + + + D I D E
Sbjct: 607 LFANPDIINRDDHSSIEYLLAYGGTCYGNGLEKKSYEARIEWVKENWDTILD-----FEN 661
Query: 691 RRWWLKAEDPFQCLAVCINL--TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
KA++ F LA C + +SS F +++P+ DG+CNG QH A + +
Sbjct: 662 SDLLEKADEKFLFLAFCFEIRRFNKFLASSDFEFKTYLPIQLDGTCNGFQHLALMSHELT 721
Query: 749 GAAAVNLVAREK---PADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLV 805
++NL K P D YS I + +Q + ++LL ++R V
Sbjct: 722 LFDSLNLSKSSKADNPKDFYSHILTLLEGYLQEKYKNSRNEEERESFSRLLKLGLNRSNV 781
Query: 806 KQTVMTSVYGVTYIGARDQIKRRL-KERGAPMEEAELFGASCYAA-------------KV 851
K+ +MT Y T +K L ++ +E + Y ++
Sbjct: 782 KKIIMTKPYNSTDTTLSSYLKSSLILDKTETSKEDPSIKLNWYKVSKDSEVSVNHKDIRL 841
Query: 852 TLTALGEM----FQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVK 907
+ + EM + + + +L + A + N P+ W P GL V Q Y K + VK
Sbjct: 842 MVETINEMLFVRYPRIKALNEYLNKIAILHNKLNIPIVWYLPTGLIVNQQYMKQHKKRVK 901
Query: 908 ---TSLQILTLQRETEKVMVKRQRT--AFPPNFVHSLDGSHMMM-------TAVACRKAG 955
+S + LTL T+KV + +Q+ A PN VHSLD + + + ++ +
Sbjct: 902 PTWSSTKYLTLTI-TDKVKIDKQKQVRALMPNLVHSLDATTLCVLYNLFSKSSYKTKNKN 960
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
+ F VHD Y A +V+ + + L+ ++ +Y +N ++SF K
Sbjct: 961 INFYSVHDCYGVTAPNVESLIKHLQSTYINIYTD---KNYIESFHK 1003
>gi|392973304|ref|YP_006489261.1| RNA polymerase [Colwellia phage 9A]
gi|388549474|gb|AFK66671.1| RNA polymerase [Colwellia phage 9A]
Length = 878
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 174/724 (24%), Positives = 293/724 (40%), Gaps = 175/724 (24%)
Query: 460 PMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEP----VFEALDTLG 515
PM+ P W G G + T AK+ +KR K + P V +A++ L
Sbjct: 175 PMVCKPDDWEGVTGGGYL--------TDTAKKLTPLIKRNSK-HVAPEGNIVIDAINHLQ 225
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADL----------------VDRNDVPLPEKPETE-- 557
T +R+N R+ SV + G R D+ + + D L EK + E
Sbjct: 226 KTPYRINKRIFSVCKVLQ--GTRPEDMKKVFMPKTGKFEEECPITKEDEYLWEKEDGEKE 283
Query: 558 --------------------DEAQLRK----WQWKVRNVKKENRERHSQRCDIELK--LS 591
DE ++K ++W R + R+ + D K ++
Sbjct: 284 ITDKKTGKVKTKKCLVMVHQDEESVKKRKDYFRWAARFDLHKKRKEAKKSLDRSYKTCMT 343
Query: 592 VARKMKDEEGFYYPHNVDFRGRAYP-MHPYLNHLGSDLCRGILEFAEGRTL-----GKSG 645
+ ++ + Y+ +++D R R YP +N GSD + +EFA G L G+ G
Sbjct: 344 LVSELDKYDEIYWAYSLDRRSRVYPSAMTGINLQGSDYQKANVEFAVGLPLDFDGDGEGG 403
Query: 646 ----LHWLKIHLANLYAGGV--DKLSHEGR------LAFTENHLDDIFDSADKPLEGRRW 693
+ + H N GV DKL+ E L+ + I + A+ PLE + W
Sbjct: 404 EYAIIKTMCNHWGNDSGNGVKTDKLTREQAQNWLHGLSGYKGSESWILECANDPLESKAW 463
Query: 694 WLKAEDPFQCLAVCINLTE--ALRS-SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
+KA+ P Q LA + + A R + F+SH+ D SC+G Q +A+ RD +GA
Sbjct: 464 -MKADKPLQFLAAILEWKDWKAYRVLHNDYKFVSHLCDPNDASCSGAQILSAMTRDMVGA 522
Query: 751 AAVNL-----------VAREKPADVYSGIA---------ARVLVIIQ-RDAQRDPAV--F 787
NL VAR+ +++S I R VI Q +D +V F
Sbjct: 523 MHTNLLNMPVQDLYMAVARKVSENLFSMIGECELSQDWLGRSNVIKQIQDVMGGVSVEVF 582
Query: 788 PDALRAKLL---------------------------LSQVDRKLVKQTVMTSVYGVTYIG 820
D + +L LS + R LVK+ VM Y T G
Sbjct: 583 TDETQEIVLNHVGDGLSPEEIYDKLYTELSKVECERLSLIVRNLVKKPVMVKFYSGTRYG 642
Query: 821 ARDQIKRRLKERGAPMEEAELF------GASCYAAKVTLTALGEMFQAARGIMSWLGECA 874
+ + ++ + E F A+ + + ++ ++ A +M W A
Sbjct: 643 NIEHCNEFVVDK----QWEEYFRCDGTGKAAAFMGNLIFDSINQVIAGAGQVMEWFVHVA 698
Query: 875 KIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT----------------SLQILTLQRE 918
++ +EN PVRWTTP+G + +H++K +L++ L +
Sbjct: 699 DVLGNENLPVRWTTPVGFKA-----SMAKHSMKKIRLSVLFHGESGYNEFTLKVPMLLKT 753
Query: 919 TE-----KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTF-AGVHDSYWTHACDV 972
+ K+ V + ++ P+ VHSLD + +M + C++ G+ + +HDS +H C
Sbjct: 754 EDGTKAYKLDVNKMKSGIAPDIVHSLDAALIMKVSERCKREGIEYLTMIHDSLGSHCCYS 813
Query: 973 DEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPL--PER-----GDFDLREVLGS 1025
NRI+RE+F+E+++ I + F P+ L PE+ G++DL +L S
Sbjct: 814 ARFNRIIREEFIEIFKEDILNKMYLEFLDQLPEYSKCLLKSPEKFGIKYGEYDLATILES 873
Query: 1026 PYFF 1029
+ F
Sbjct: 874 EFCF 877
>gi|2239153|emb|CAA72336.1| putative T3/T7-like RNA polymerase [Oryza sativa]
Length = 87
Score = 147 bits (372), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 73/87 (83%)
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
MMMTA+AC+KAGL FAGVHDS+W HACDVD+MN+ILR +FVELY MPI ENLL FQ SF
Sbjct: 1 MMMTAIACKKAGLHFAGVHDSFWVHACDVDKMNQILRGQFVELYSMPILENLLKEFQTSF 60
Query: 1004 PKLVFPPLPERGDFDLREVLGSPYFFN 1030
P L FPP P +GDFD+REVL S YFFN
Sbjct: 61 PTLEFPPCPSQGDFDVREVLASTYFFN 87
>gi|116072263|ref|ZP_01469530.1| DNA-directed RNA polymerase [Synechococcus sp. BL107]
gi|116064785|gb|EAU70544.1| DNA-directed RNA polymerase [Synechococcus sp. BL107]
Length = 809
Score = 145 bits (367), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 187/786 (23%), Positives = 325/786 (41%), Gaps = 93/786 (11%)
Query: 273 MAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDE 332
+A + + KL+ + T ++ R V A IG AI++E+R F T N DE
Sbjct: 89 VAFVALRKLIDCIHTK-QNQRTHVCTA---IGRAIQEELRNQFF---------TLNL-DE 134
Query: 333 EGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVK---GQDD-FKPWGQDARAKVGSRV 388
G + ++ + K +L KL RR+++ +DD ++ W +VGS +
Sbjct: 135 NGKKIRNKRLKKPRSTPKYRNL--GVKLAMERRLLEKGWAKDDLYQDWPSVLHTQVGSLL 192
Query: 389 IELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLE 448
++ + Y + +A + F T AL + SK+ I+
Sbjct: 193 LDPAIKEKYFDAQTRWVAKNRSEKFVVPTPALE------EHLSKRKEQID---------- 236
Query: 449 RTARHMVIPYMPMLVPPVKWTGYDKGAHF-FLPSYVMRTHGAKQQRDTVKRTPKKQLEPV 507
+V ++ PP+ W D A F F Y H ++ + E
Sbjct: 237 ----DLVTTKDVLIEPPLDWQLQDGEARFNFSGGY----HLPYTRKPNNPLCRGRHYETR 288
Query: 508 FEA-----LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP-----LPEKPETE 557
F + L+TLG T ++V+ V V+D W +A + P +P+ +
Sbjct: 289 FGSDAINLLNTLGRTAFQVDPLVFEVIDDCWETQRSIAGFNSPFENPELNQEMPDHLKAL 348
Query: 558 DEAQLRKWQWKVRNVKKENRER-HSQRC-DIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
D+ + W+ R ++E+ H ++ + L ARK + + F+ + DFRGR Y
Sbjct: 349 DKKHPDRVAWRKRQAYLHDQEQEHIEKTQSAQAVLISARKNETRQRFWLSWSCDFRGRIY 408
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
+L+ D R +L FA+G L + G W + + G K S+ R +T
Sbjct: 409 SQQSWLDPQSRDFERSVLRFADGCRLDEQGKEWAARAVGAAFGGT--KQSYAARSQWTYE 466
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE-ALRSSSPETFISHIPVHQDGSC 734
+ + I A P+ W A++P+Q L + + L+ + P + +PV D +
Sbjct: 467 NTELIAAIASDPIRHSSQWENADEPWQFLQMAMEWNAVVLQQTKP---LWQVPVSVDSTA 523
Query: 735 NGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAK 794
+GLQ +A+ RD +G NL+ E P VL + + A+ DP AK
Sbjct: 524 SGLQLLSAMRRDPVGMKWTNLIPSEDPDQPPRDAYLEVLRVAREIAEADPQT---VWLAK 580
Query: 795 LLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLT 854
L DR L K +M ++YG +Y R I L++ G+ + + + +
Sbjct: 581 HL---TDRSLGKPVLMIAIYGGSYRTNRGDIVDALRKLGS-YPDMVSWDDTKVMTDILQK 636
Query: 855 ALGEMFQAARGIMSWLGE-CAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKT----- 908
A ++F AA + WL + C K I + + W TP + Q ++ V T
Sbjct: 637 ASKQVFPAAFETLDWLRQLCTKAIENGATSLWWETPCSDQIHQSEYEVDSIEVDTYGHGR 696
Query: 909 -SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWT 967
+ + ++ EK + ++ F PNFVHS D + A ++ +HD
Sbjct: 697 MRIAVGSVNEPNEKKL----KSGFAPNFVHSYDAC---LLKTAFQQWSKPLGTIHDCISV 749
Query: 968 HACDVDEMNRILREKFVELYEMPIFENLLDSFQ---KSFPKLVFPPLPERGDFDLREVLG 1024
D+D+ + +R+ F+E+ L ++ + K PKLV +G DL+++L
Sbjct: 750 LPNDMDQAHERVRKAFIEICHGDPLARLANNLKVPSKEHPKLV------QGKGDLQKILN 803
Query: 1025 SPYFFN 1030
S Y FN
Sbjct: 804 SQYMFN 809
>gi|327492538|ref|YP_004347441.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912878|gb|ADO51622.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1107
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 152/638 (23%), Positives = 257/638 (40%), Gaps = 126/638 (19%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
PM+V P WT G S + K++ D + K L +++ ++ L + K
Sbjct: 524 FPMIVQPKIWTEDTYGGFLSNDSRELDIITGKEEHDHI--IENKSL--IYQTVNYLNSIK 579
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRE 578
+ VNN +L + T +E + + + ++K +N
Sbjct: 580 FGVNNMLLEYI--------------------------TSEEGK-----YILDHIKPDNDL 608
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
+ + + L VA K+ FY + D+RGR Y +L++ DL +L F EG
Sbjct: 609 QRT------ITLEVA-KLYSNIPFYLNTHADWRGRIYTQSFFLSYQSGDLSLSLLNFWEG 661
Query: 639 RTLGKSGLHWLKIHLANLY-AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
+ + G +L I+ AN + + K S + R+ + + D I + R L A
Sbjct: 662 EKVNEEGKFYLYIYGANSHDQNKISKASFKDRIDWVNENYDKIINL------DRELILSA 715
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV- 756
E PF A C+N+ E ++P I PV D +C+G+QH AAL +D NL+
Sbjct: 716 ESPFIFTAFCLNMREI--HNNPNVLIK-TPVFLDATCSGIQHLAALMKDLELGTNTNLIE 772
Query: 757 --AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVY 814
EKP D+Y + + I + + + A L L ++ RK VK +MT VY
Sbjct: 773 STIEEKPGDIYETLLEPINKAINKFGEENIEY------AMLSLVKLTRKEVKAPIMTKVY 826
Query: 815 GVTYIGARDQIKRRLKER----------GAPMEEAE------------------------ 840
VT G +Q++ K + PM E
Sbjct: 827 NVTKYGISNQLQSIFKIKDDENFIDEFYNKPMNEIHKEFLDSFKSNKSKTKFICKGKDGK 886
Query: 841 ---LFGASCY-AAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
L Y A + + +F + I ++ E AK+ P+ W TP GL + Q
Sbjct: 887 YIRLSSKEIYKIASIINEQIFVVFPSLNEIYNYFIELAKLAVKLELPMTWITPSGLKITQ 946
Query: 897 PYRKLGRHTVKTSL----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMM-MTAVAC 951
Y K + + S+ + + ++ T+K+ +Q + PN +HSLD +H+M + A
Sbjct: 947 NYFKQKKKVISISIFGKTKKIVIKENTDKIDKGKQIQSIIPNIIHSLDATHLMNIIKNAI 1006
Query: 952 RKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF---------ENLLD----- 997
+ +HD + T + + ++++FV LY F +NL D
Sbjct: 1007 NENFNPVITIHDCFGTLPNYMGSLEYRVKKEFVLLYSDNKFLNDYHTRFRQNLEDNQFVI 1066
Query: 998 --SFQKSF------PKLVFPPLPERGDFDLREVLGSPY 1027
+ KS+ L P LP+ G+ DL +++ S Y
Sbjct: 1067 KETNDKSYVLLENDKFLEIPTLPQLGELDLEKIIKSKY 1104
>gi|224110560|ref|XP_002333067.1| predicted protein [Populus trichocarpa]
gi|222838328|gb|EEE76693.1| predicted protein [Populus trichocarpa]
Length = 82
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 73/82 (89%), Gaps = 2/82 (2%)
Query: 451 ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 510
ARHMVIPYMPMLVPP++W GYDKGAH FLPSYVMR HGAKQQR+ VKRTP+KQL+ VFE
Sbjct: 3 ARHMVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRTPRKQLQAVFE- 61
Query: 511 LDTLGNTKWRVNNRVLSVLDRI 532
DTLGNTKW VN RVLSV+DRI
Sbjct: 62 -DTLGNTKWSVNKRVLSVVDRI 82
>gi|13959703|sp|P33541.2|RPOP_NEUIN RecName: Full=Probable DNA-directed RNA polymerase
gi|578158|emb|CAA36326.1| RNA polymerase [Neurospora intermedia]
Length = 811
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 137/569 (24%), Positives = 240/569 (42%), Gaps = 89/569 (15%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTH---GAKQQRDTVKRTPKKQLEPVFEALDTLG 515
+PM+ PP+ W +G + + G+ R + T K ++ ++ L
Sbjct: 243 LPMVCPPLPWGHGIRGGNLINLTDTQDESLVVGSFHHRHKIAITDK-----LYNVINKLN 297
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575
K+++N +LS L + G + D +N KK+
Sbjct: 298 AFKFKINGDLLSYLQ---NEGSFILDFY--------------------------KNTKKD 328
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
+ DI AR + FY N+D+RGR Y YL++ GS+L ++
Sbjct: 329 TYINNMITIDI------ARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSLALINL 381
Query: 636 AEGRTLGKSGLHWLKIHLANLY--AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
EG+ L + GL + ++ AN+Y G K S + R + +LD+I + DK +
Sbjct: 382 FEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNII-AMDK-----EF 435
Query: 694 WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
LKAE P A C+ + + + F P+ D +C+G+QH+AA+ D V
Sbjct: 436 ILKAESPTLFAAFCLTMRKLKENPDYPVF---NPIFLDATCSGVQHFAAMLLDLELGKYV 492
Query: 754 NLV-AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
NL+ + E D YS + + I A++ F + + + ++R L+K+ +MT
Sbjct: 493 NLINSGESVNDFYSQLIPAINKAINESAEKK---FKNLKFSDI---SLNRSLLKKVIMTK 546
Query: 813 VYGVTYIGARDQIKRRLKE-------RG---------APMEEAELFGASCYAAKVTLTAL 856
Y VT G +Q+K +L++ +G P + + + + + +
Sbjct: 547 SYNVTTYGITEQLKSKLEKVEKIVISKGKEIKVYDYLVPTKNGDFVVLDTFEVETLASII 606
Query: 857 GE----MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR--KLGRHTVKT-- 908
+ F I +L AKI + P+ W+TP GL + Q Y K+ + T+
Sbjct: 607 NDNIFNQFPKLHSIYDYLTRLAKIYLKLDIPLSWSTPDGLELTQRYNLSKVKKLTINFLG 666
Query: 909 SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
+ L+ + +R+ A PN +HSLD SH+ M + L +H+ + TH
Sbjct: 667 KNRTAVLRSWVNEKDSRREVQAIIPNIIHSLDASHLTMIIDSWDSYILP---IHECFGTH 723
Query: 969 ACDVDEMNRILREKFVELYEMPIFENLLD 997
D+ ++ +RE F+ LY F N +D
Sbjct: 724 PNDMYKLAEQVRECFILLYSKNDFLNKID 752
>gi|116793061|gb|ABK26601.1| unknown [Picea sitchensis]
Length = 81
Score = 141 bits (355), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/77 (79%), Positives = 67/77 (87%)
Query: 596 MKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN 655
MKDEE FYYPHN+DFRG AYPMH YLNHLGS++CRG+LEF EGR LGK+ L+WLKIHLAN
Sbjct: 1 MKDEECFYYPHNLDFRGCAYPMHLYLNHLGSNVCRGLLEFVEGRPLGKTRLYWLKIHLAN 60
Query: 656 LYAGGVDKLSHEGRLAF 672
LY GGVDK S EGRL F
Sbjct: 61 LYGGGVDKYSFEGRLTF 77
>gi|49147034|ref|YP_025889.1| DNA-dependent RNA polymerase [Moniliophthora perniciosa]
gi|34538679|gb|AAQ74287.1| DNA-dependent RNA polymerase [Moniliophthora perniciosa]
Length = 1028
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 155/653 (23%), Positives = 259/653 (39%), Gaps = 130/653 (19%)
Query: 447 LERTARHMVIP--YMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQL 504
LE ++++I PM+V P W+ G S + + D + K L
Sbjct: 431 LEDIKKNIIIDPNTFPMIVNPNSWSKDTYGGFLSNKSRELDIITGNESHDHI--IENKAL 488
Query: 505 EPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR-LADLVDRNDVPLPEKPETEDEAQLR 563
+++ ++ L + K+ VNN +L D I S G+ + + + ND
Sbjct: 489 --IYQTVNYLNSIKFGVNNMLL---DYITSEEGKYILEHIKPNDAL-------------- 529
Query: 564 KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNH 623
QR + L VA K+ + FY + D+RGR Y +L++
Sbjct: 530 ------------------QRT---ITLEVA-KLYERGPFYLNTHADWRGRIYTQSFFLSY 567
Query: 624 LGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY-AGGVDKLSHEGRLAFTENHLDDIFD 682
DL +L F EG + + G +L I+ AN + + K S + R+ + + D I +
Sbjct: 568 QSGDLSLSLLNFWEGEKVNEEGKFYLYIYGANSHNQNKISKASFKDRIDWVNKNYDKIIN 627
Query: 683 SADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAA 742
R L AE PF A C+N+ E ++P I PV D SC+G+QH AA
Sbjct: 628 L------DRELILTAESPFIFTAFCLNMREI--HNNPNALIK-TPVFLDASCSGIQHLAA 678
Query: 743 LGRDTLGAAAVNLV---AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ 799
L +D A NL+ EKP D+Y + + I + + + + L L +
Sbjct: 679 LMKDLELGANTNLIESTIEEKPGDIYERLLEPINKAINKFGEENIEY------SMLSLVK 732
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE---------------------------- 831
+ RK VK +MT VY VT G +Q++ K
Sbjct: 733 LTRKEVKVPIMTKVYNVTKYGISNQLQSIFKNIDEEIFVDEFYTKPKNEIHNDFLDSFKS 792
Query: 832 ---------RGAPMEEAELFGASCY-AAKVTLTALGEMFQAARGIMSWLGECAKIIASEN 881
+G + L Y A + + +F + I ++ E AK+
Sbjct: 793 NKSKTKFICKGKDGKYIRLSNKEIYKIASIINDQIFVVFPSLNEIYNYFIELAKLAVKLE 852
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVMVKRQRTAFPPNFVH 937
P+ W TP GL + Q Y K + + S+ + + ++ T+K+ +Q + PN +H
Sbjct: 853 LPMTWITPSGLKITQNYFKRKKKVISISIFGKSKKIVIKENTDKIDKGKQIQSIIPNIIH 912
Query: 938 SLDGSHMM-MTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF---- 992
SLD +H+M + A +HD + T + + ++++FV LY F
Sbjct: 913 SLDATHLMNIIQNAINDNFNPVITIHDCFGTLPNYMGSLEYRVKKQFVLLYSDNKFLNDY 972
Query: 993 -----ENLLD-------SFQKSF------PKLVFPPLPERGDFDLREVLGSPY 1027
+NL D + KS+ L P +P+ G DL +++ S Y
Sbjct: 973 HTRFIQNLEDNQFVIKETNDKSYVLLENDKFLEIPTIPKLGKLDLEKIIKSKY 1025
>gi|385304971|gb|EIF48970.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 391
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 183/408 (44%), Gaps = 42/408 (10%)
Query: 261 YAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEK- 319
Y P+ + + +A+IT+ ++M +T V + + ++E E + K L
Sbjct: 3 YGPFIXLMKPEKVAIITILEVMKNCVTSDIARGVPVSKVVMSVSKSLELEYKSEKVLASD 62
Query: 320 ---------TKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQ 370
+K E K + E E++ LR + Q L
Sbjct: 63 VDXYXNFRAIRKTPEFKRFLRSKQAEKIIXAAERKSLRNXSIETETSQLL---------- 112
Query: 371 DDFKPWGQDARAKVGSRVIELLTQTAYI--QSPADQLADAPPDIFPAFTHALRTVSKETK 428
W D+ +VGS +I +L Q A + + + + + PAF H T +
Sbjct: 113 -----WDADSHCRVGSALISMLLQIAKVDVEGVDPKTXEVKKALAPAFYH---TYDFQNG 164
Query: 429 GGSKKYGVIECNPLVLK--GLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT 486
G K GVI+ N G +R + + Y+PM+ P WT Y+ G ++ V+R+
Sbjct: 165 G---KVGVIKVNQRFSSKLGKDRLDQSIQAQYLPMIARPRPWTTYNDGGYYLKRCLVLRS 221
Query: 487 HGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545
A +Q K +++ V L+ LGNT W VN R+L ++ ++W+ G ++
Sbjct: 222 KNAPEQFAYAKAAAMSGKMDKVLSGLNALGNTSWTVNKRILELMTQVWNTGKAFLEIPKA 281
Query: 546 ND-VPLPEKPETEDE-AQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFY 603
+ + LP+ P E ++ +++ R+ + S RCD+ KL +AR E F+
Sbjct: 282 EEKLILPKPPAKGAEPIEIFRYRRDCRDKCNAFAKDRSMRCDMNYKLEIARAFLGERIFF 341
Query: 604 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKI 651
PH++DFRGRAYP+ P NHLG+DL RG+L F GR S W+K+
Sbjct: 342 -PHSLDFRGRAYPIPPNFNHLGNDLTRGLLRFL-GRKEAWS--RWIKM 385
>gi|207345726|gb|EDZ72451.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 224
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 884 VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQRTAFPPNFVHSLDG 941
V WTTPLGLP+VQPYR+ + V+T+LQ + + V +RQ+ PPNF+HSLD
Sbjct: 18 VIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDA 77
Query: 942 SHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQK 1001
SHM+++A C K GL FA VHDSYWTHA D+D MN +LRE+F++L+E+ + L + F +
Sbjct: 78 SHMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLHEVDLVLRLKEEFDQ 137
Query: 1002 SFPKLV 1007
+ V
Sbjct: 138 RYKNYV 143
>gi|395132392|dbj|BAM29339.1| rnapol (mitochondrion) [Lentinula edodes]
Length = 1248
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 177/716 (24%), Positives = 288/716 (40%), Gaps = 158/716 (22%)
Query: 404 QLADAPPDIFPAFTHALRTVSKETKGGS---KKYGVIECNPLVLKGLERTARHMVI--PY 458
+L D I F HA+ +K+ K S K ++E N + LE ++++I
Sbjct: 596 KLGDFFMSILQQFPHAI--FNKKVKLNSYFTKDPFLLELNK---EYLEDIKKNLIIDPKT 650
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+PML P+ WT G FL + + D + + E +F ++ + K
Sbjct: 651 LPMLCKPLDWTENSYGG--FLSNEIRGNDIITGSNDHIVQNR----ESLFNTVNNFNSIK 704
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRE 578
+ VN ++L L + S G + + + KPE DE Q R K+
Sbjct: 705 FGVNTKLLKYL--LSSEGSYILESI---------KPE--DELQ-RALTLKIG-------- 742
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
++ FY D+RGR Y YL++ DL +L F EG
Sbjct: 743 ----------------ELYSNTFFYLNTQTDWRGRIYVQSFYLSYQAGDLSTALLNFWEG 786
Query: 639 RTLGKSGLHWLKIHLANLY-AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKA 697
+ + G +L I+ AN + + K S+ RL + +N+ + I + R L A
Sbjct: 787 QPINDEGRFYLYIYGANSHNENNISKASYTDRLKWVKNNYNKIINL------DRNLILSA 840
Query: 698 EDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA 757
E+PF A C+NL E +P IS PV D +C+G+QH AAL RD + NL+
Sbjct: 841 ENPFIFTAFCLNLREI--HYNPNAIIS-TPVFLDATCSGIQHLAALLRDLDLGSNTNLIP 897
Query: 758 R---EKPADVYSGIAARVLVIIQRDAQRDP--AVFPDALRAKLLLSQVDRKLVKQTVMTS 812
EKP D+Y + + I + + + +F KL+ RK +K +VMT
Sbjct: 898 STKDEKPGDIYDTMLGYINRAINKLGEENIQYGIFT---YIKLV-----RKEIKPSVMTK 949
Query: 813 VYGVTYIGARDQIKRRLK-------------------------ERGAPMEEA-------- 839
VY V+ G Q++ K ++ P E+
Sbjct: 950 VYNVSKYGISQQLQTIFKKIYVKDLDNHSSTNISVAEAENKFYDKDKPFEDIPEVLEKSL 1009
Query: 840 ------ELFGASCYAAKVTLTALGEMFQAA--------------RGIMSWLGECAKIIAS 879
LF + K + E+F+ A I ++ E K+ +
Sbjct: 1010 KSNKNKTLFICTGLDGKKVYLSRSEVFKIASIIDEQIFVAFPSLNNIYNYFIETTKLSSM 1069
Query: 880 ENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILT---LQRET---EKVMVKRQRTAFPP 933
+ P+ W TP GL + Q Y K + V SL T + R+T +K+ +Q A P
Sbjct: 1070 LDLPIIWITPSGLKLTQNYIKQKKKVVSVSLFGHTKKMMYRDTTGEKKIDNSKQAQAIIP 1129
Query: 934 NFVHSLDGSHMM-MTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIF 992
N +HSLD SH++ + A VHD + T + +++ ++++F+ LY F
Sbjct: 1130 NIIHSLDASHLVNLIKAASNDNFRPIITVHDCFGTLPNLMGDLDYRVKKEFILLYSKFEF 1189
Query: 993 ENLL----------DSFQ------KSF----PKLVFPPLPER-GDFDLREVLGSPY 1027
NL + F+ KS+ KL+ P+P + G+ DL ++ S Y
Sbjct: 1190 LNLFHQRFIQNLKDNQFEIVTKNGKSYVIFRDKLLEIPVPPKLGNLDLDNIIKSKY 1245
>gi|2735635|gb|AAC05224.1| T3/T7-like RNA polymerase [Rhizophydium sp. 136]
Length = 155
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 97/163 (59%), Gaps = 18/163 (11%)
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
+ YGVT++GARDQI RLKE A + Y + ++ +MF+ AR I +WL
Sbjct: 1 NTYGVTFVGARDQIFNRLKEARA--------KCALYITRKVFESMSDMFEGARAIQNWLS 52
Query: 872 ECAKIIA----SENQP----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL--QRETEK 921
+ A S+ P + WT+PLG P+VQPYRKLG VKT +Q ++ ++
Sbjct: 53 KGANFRMQRRNSKAPPKMTSMIWTSPLGFPIVQPYRKLGFDHVKTFMQTFSIIDDKKPSP 112
Query: 922 VMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
V +Q +AFPPNFVHSLD SHMM+TA+AC +TFA VHDS
Sbjct: 113 VNSMKQASAFPPNFVHSLDASHMMLTAMACLAQNVTFAAVHDS 155
>gi|149940226|emb|CAJ13817.1| DNA-directed RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 174
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 84/122 (68%), Gaps = 21/122 (17%)
Query: 843 GASCYAA----KVTLTALGEMFQAARGIMSWLGECAKI-------IASENQPVRWTTPLG 891
G YAA + TLTALGEMF+AAR IM+WLG+CAK+ IA +N PV+WTTPLG
Sbjct: 3 GLQHYAALGRDQTTLTALGEMFEAARSIMTWLGDCAKVYIIFIHVIAMKNNPVQWTTPLG 62
Query: 892 LPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 951
LPVVQPYRKLGRH V R K + +++TAFPPNFVHSLDGSHMMMT +
Sbjct: 63 LPVVQPYRKLGRHLV----------RHLFKYLHYKEKTAFPPNFVHSLDGSHMMMTDMCE 112
Query: 952 RK 953
+K
Sbjct: 113 QK 114
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 74/105 (70%)
Query: 178 RRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGW 237
R++ R + ++ L ++ + + + ++ DMCEQKLAPNLPY+KSLFLGW
Sbjct: 70 RKLGRHLVRHLFKYLHYKEKTAFPPNFVHSLDGSHMMMTDMCEQKLAPNLPYVKSLFLGW 129
Query: 238 FEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
FEPL++AI+ EQ+ C+ K++ AYAP FDQLPADMM +ITMHKLM
Sbjct: 130 FEPLKNAISGEQDLCKEGKNRGAYAPQFDQLPADMMTIITMHKLM 174
>gi|224114299|ref|XP_002332393.1| predicted protein [Populus trichocarpa]
gi|222832716|gb|EEE71193.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 83/113 (73%), Gaps = 5/113 (4%)
Query: 138 AVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQV 197
A+SSTDVE++VS +E+QEL EM+KEE+ R R R G+GS K+R+L+ RQV
Sbjct: 55 ALSSTDVEDNVSGADEVQELQPEMRKEEEH-----FRRRRLRANPGIGSRKHRVLRRRQV 109
Query: 198 KIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQE 250
KIE EAWE A EY+ELL DMCE LAPNLPYMKSLFLGWFEP DAI +E E
Sbjct: 110 KIEAEAWELATKEYKELLKDMCEHNLAPNLPYMKSLFLGWFEPFTDAIEQETE 162
>gi|1236344|gb|AAB01084.1| RNA polymerase, partial [Naegleria fowleri]
Length = 123
Score = 134 bits (336), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/124 (50%), Positives = 90/124 (72%), Gaps = 3/124 (2%)
Query: 812 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 871
SVYGVT++GAR+QI++RLKE+ + E ++F + Y A +TL +LGE+F +A+ IM WL
Sbjct: 1 SVYGVTFVGAREQIQKRLKEK-KEVPEDDVFACASYLASITLKSLGEVFSSAQNIMEWLN 59
Query: 872 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVK--RQRT 929
+CA +I+S + PV WTTPLGLPV+QPYR VKT +Q +T+ ++K+ V RQ++
Sbjct: 60 DCALLISSSDNPVTWTTPLGLPVIQPYRSKRTKVVKTVMQCVTISDSSDKLPVSSTRQKS 119
Query: 930 AFPP 933
AFPP
Sbjct: 120 AFPP 123
>gi|13959456|sp|O03685.1|RPOP_GELSP RecName: Full=Probable DNA-directed RNA polymerase
gi|1805213|gb|AAB41448.1| ORF1 [Gelasinospora sp. G114]
Length = 831
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/453 (25%), Positives = 201/453 (44%), Gaps = 47/453 (10%)
Query: 602 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY--AG 659
FY N+D+RGR Y YL + GS+L ++ EG+ L + GL + ++ AN+Y G
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
K S + R + +LD+I + DK + LKAE P A C+ + + +
Sbjct: 428 KFSKKSFQDRFNWVVENLDNII-AMDKD-----FILKAESPTLFAAFCLTMRKLKENPDH 481
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV-AREKPADVYSGIAARVLVIIQR 778
F P+ D +C+G+QH+AA+ D VNL+ + E D YS + + I
Sbjct: 482 PVF---NPIFLDATCSGVQHFAAMLLDLELGKYVNLINSGESVNDFYSQLIPAINKAINE 538
Query: 779 DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE------- 831
A++ K ++R L+K+ +MT Y VT G +Q+K +L++
Sbjct: 539 SAEKKLK------NVKFSDISLNRSLLKKVIMTKSYNVTTYGITEQLKSKLEKVEKIIIS 592
Query: 832 RG---------APMEEAELFGASCYAAKVTLTALGE----MFQAARGIMSWLGECAKIIA 878
+G P + + + + + + + F I +L KI
Sbjct: 593 KGKEIKVYDYLVPTKNGKFVVLDTFEVETLASIINDNIFNQFPKLHSIYEYLTRLTKIYL 652
Query: 879 SENQPVRWTTPLGLPVVQPYR--KLGRHTVKT--SLQILTLQRETEKVMVKRQRTAFPPN 934
+ P+ +TP GL + Q Y K+ + T+ + L+ +R+ A PN
Sbjct: 653 KLDIPISCSTPDGLELTQRYNLSKVQKLTINFLGKNRTAVLRSWVSDKDSRREVPAIIPN 712
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
+HSLD +H+ M + L +HD + TH D+ ++ +RE F+ LY F +
Sbjct: 713 IIHSLDAAHLPMLIDSWDSYILP---IHDCFGTHPNDMFKLAEQVRECFILLYSKNDFLS 769
Query: 995 LLDS-FQKSFPKLVFPPLPERGDFDLREVLGSP 1026
+DS F+++ + + G+ D ++ G+P
Sbjct: 770 KIDSKFRENLKDYKIEIVNKNGE-DFVKIKGTP 801
>gi|437706625|ref|ZP_20825381.1| DNA-directed RNA polymerase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435291618|gb|ELO68431.1| DNA-directed RNA polymerase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
Length = 337
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 153/322 (47%), Gaps = 38/322 (11%)
Query: 458 YMPMLVPPVKW-TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGN 516
Y P +VPP W T ++ G H R K R+ V++ +KQ+ V++A++ L N
Sbjct: 19 YAPCVVPPRPWKTPFNGGFH--TEKVASRIRLVKGNREHVRKLTQKQMPKVYKAINALQN 76
Query: 517 TKWRVNNRVLSVLDRIWSCG-----GRLADLVDRNDVP---------------LPEKPET 556
T+W++N VL+V++ + L+D+ + P L E
Sbjct: 77 TQWQINKDVLAVIEEVVRLDLGYGVPSFKPLIDKENKPANPVPVEFQHLRGRELKEMLSP 136
Query: 557 EDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYP 616
E Q W+ + + +R S+ + + ARK E Y+ + +D R R Y
Sbjct: 137 EQWQQFINWKGECARLYTAETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYA 196
Query: 617 MHPYLNHLGSDLCRGILEFAEGRTLGK-SGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
L+ +DL + +L F EGR + L W I+ ANL+ G DK + + R++ N
Sbjct: 197 QSSTLSPQSNDLGKALLRFTEGRPVDSVEVLKWFCINGANLW--GWDKKTFDVRVS---N 251
Query: 676 HLDDIF-----DSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL---RSSSPETFISHIP 727
LD+ F D A PL +W KA+ P++ LA C + L + F +H+P
Sbjct: 252 VLDEEFQDMCRDIAADPLTFTQW-AKADAPYEFLAWCFEYAQYLDLVEEGRADEFRTHLP 310
Query: 728 VHQDGSCNGLQHYAALGRDTLG 749
VHQDGSC+G+QHY+A+ RD +G
Sbjct: 311 VHQDGSCSGIQHYSAMLRDEVG 332
>gi|32455893|ref|NP_862205.1| rna polymerase [Blumeria graminis f. sp. hordei]
gi|28300411|gb|AAO37818.1| RNA polymerase [Blumeria graminis f. sp. hordei]
Length = 973
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 122/484 (25%), Positives = 217/484 (44%), Gaps = 77/484 (15%)
Query: 565 WQWKVRNVK------KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMH 618
++ K+ NVK KE ++ S++ E + +A+ + ++P +D RGR YP
Sbjct: 444 FEHKLLNVKRNKAQEKEYQQFLSKKLLEEYIIKIAQTYSNVPEIFFPIKLDNRGRLYPKT 503
Query: 619 PYLNHLGSDLCRGILEFAEGRTLGKS---GLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
+ ++ GS+L + ++ FA + +S + +LK + A + G+++ S+ RL + +N
Sbjct: 504 AFFHYQGSELAKALILFARPDLIKRSDKEAIEYLKAYGATCFGNGLNRKSYTKRLDWVDN 563
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL---TEALRSSSPETFISHIPVHQDG 732
+ D I D + L +AE+ F L+ CI + L + F +++P+ DG
Sbjct: 564 NWDQIIDFENSGLVD-----EAEEKFLFLSFCIEMKRFNNFLSNEYIHEFKTYLPIQLDG 618
Query: 733 SCNGLQHYAALGRDTLGAAAVNLVAREK---PADVYSGIAARVLVIIQRDAQRDPAVFPD 789
+CNG QH A L +T +NL+ +K P D Y I ++ + +++ R +FPD
Sbjct: 619 TCNGFQHLALLSNETKLFETLNLLDAKKSDDPKDFYEHIVNQINIHLEK---RRVLIFPD 675
Query: 790 ALR---AKLLLSQVDRKLVKQTVMTSVYG------VTYI------------------GAR 822
+ +LL + R VK +MT Y V YI G
Sbjct: 676 EQKQSYTRLLRLGLSRSNVKPVIMTKPYNAKDKTLVKYILDTLTLSHTREKLVINEFGKE 735
Query: 823 DQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEM----FQAARGIMSWLGECAKIIA 878
IK + ++ ++ S ++ + + ++ + + + +L + KI+
Sbjct: 736 VAIKISWFKLNNGLDPEQVVNYS--DIELLVNCINDIIYVNYPNIKTLSLYLNKITKILN 793
Query: 879 SENQPVRWTTPLGLPVVQPYRKLGRHTVK--------TSLQILTLQRETEKVMVK--RQR 928
PV W P GL V Q Y + RH + TSL LT+ T+KV + +Q
Sbjct: 794 KLCLPVVWRLPHGLMVSQKY--MVRHITRVKPFSYLSTSLS-LTI---TDKVKMDKPKQI 847
Query: 929 TAFPPNFVHSLDGSHMMMTAVACRKA-----GLTFAGVHDSYWTHACDVDEMNRILREKF 983
TA PN VHSLD S + + + + + F VHD Y A V+ + +LR +
Sbjct: 848 TALMPNLVHSLDASTLALLYNSFYNSVENNKSVNFYSVHDCYGVTAKYVETLINLLRTVY 907
Query: 984 VELY 987
+++Y
Sbjct: 908 IDIY 911
>gi|478704|pir||S26945 DNA-directed RNA polymerase (EC 2.7.7.6) - Podospora anserina
mitochondrion plasmid pAL2-1
Length = 948
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 135/584 (23%), Positives = 252/584 (43%), Gaps = 70/584 (11%)
Query: 443 VLKGLERTARHMVIPY-MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK 501
+LK L V+P MPM+V P +T G + Y M + K++ + T
Sbjct: 325 ILKVLPEDGTLFVLPKKMPMMVKPKPYTTRVNGGYLSNDLY-MNENIVKEKWNLRDNTQI 383
Query: 502 KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQ 561
+F+ ++ L + +++N VL ++ S + +L+D P P T+
Sbjct: 384 LHFNQMFDLVNNLSSMGYKINTDVLDFIETYGSDYFK-NELMD----PRYSHPLTKKSKL 438
Query: 562 LRKWQWKVRNV--KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
+K + ++ + KKE +E L +A ++ F+ P N DFRGR Y
Sbjct: 439 TKKEKMELDSFLAKKETQENM---------LGLAEMFRNIPEFFMPVNADFRGRVYCTPE 489
Query: 620 YLNHLGSDLCRGILEFAE-GRTLGKS--GLHWLKIHLANLYAGGVDKLSHEGRLAFTENH 676
YLN+ +DL + +L F++ GR K L +LK++ + + G+DKLS R+ + + +
Sbjct: 490 YLNYQSTDLAKSLLLFSKPGRMYKKDYIALSYLKMYGGS--SFGLDKLSANDRIKWVDKN 547
Query: 677 LDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT---EALRSSSPETFISHIPVHQDGS 733
L+++ K + +A++ F LA CI L + F +++P+ D +
Sbjct: 548 LNNM-----KNYRNGKLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQMDAT 602
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAR---EKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
CNG QH + L D+ + +NL + P D Y+ + + ++ + + + P
Sbjct: 603 CNGFQHLSLLSLDSNLSKELNLSESTWDDVPKDFYTFLVVCFIDYLKTETLENKNLTPKE 662
Query: 791 LRA--KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL------F 842
+ +L+ ++ R+++K+ +MT Y V+ + ++ G +E+ L
Sbjct: 663 SESYNRLINMKIIREIIKKGIMTMPYNVSNFSTINYMR-----EGFELEDNSLEWYIYKN 717
Query: 843 GASCYAAKVTLTALG--------EMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
S + T LG E F + +L + A++ P+ WT P GL V
Sbjct: 718 EPSMRLKSLDFTVLGKGLRKVLHEKFHKLDTLTKYLDQVARVCTLLEIPIMWTLPTGLVV 777
Query: 895 VQPY--------RKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
Q Y + K S+++L + +Q TAF PN VHSLD + + +
Sbjct: 778 RQSYMMRDEVRMKPFNHSNKKFSMKVLNKTQFNN----SKQITAFMPNLVHSLDAASLTL 833
Query: 947 TAVACRKAGL---TFAGVHDSYWTHACDVDEMNRILREKFVELY 987
K + +HD + A ++ +L+ +++LY
Sbjct: 834 LLDFYFKESIDVKNIYTIHDCFAVPANKMECTISLLKLTYIKLY 877
>gi|327492533|ref|YP_004347431.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912867|gb|ADO51613.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1356
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 137/643 (21%), Positives = 256/643 (39%), Gaps = 101/643 (15%)
Query: 425 KETKGGSKKYGVIECNPLVLKGLERTARHMVIPY-MPMLVPPVKWTGYDKGAHFFLPSYV 483
K SKK + C ++ + + I Y +PM+V P K+ L Y+
Sbjct: 669 KSNTDSSKKESIFVCKKEIVDKIGNYFNLLDISYKIPMIVEPKKYKINQNTGQLNLGGYL 728
Query: 484 MR---------THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
+ + + + ++ R +++ + + + +++NN+VL I
Sbjct: 729 LNDIDFISPLIINNPELKSQSIIREQNN----IYDMANNISSVAYKINNQVLEF---ILE 781
Query: 535 CGGRLADLVD-RNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVA 593
G ++D N L K E + L + + + K+ E++ L +A
Sbjct: 782 NGLEYNLIIDPNNKSNLELKKEAGHKLTLSEEKELDSFLSKKRLEKNI--------LGLA 833
Query: 594 RKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS---GLHWLK 650
K+ F+ P +D RGR Y M YLN+ +L + +L F++G + KS + +LK
Sbjct: 834 LIFKNIPEFFIPVRIDNRGRVYCMADYLNYQSVELAKSLLLFSKGEKVSKSDQISIDYLK 893
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVC--- 707
I AN + G++K S+ R+ + + D I + + L +AE +A C
Sbjct: 894 IFGANCFGNGLEKKSYNNRVEWVNKNEDKIINFRNGELIS-----EAESKLLFIAFCFEY 948
Query: 708 INLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV--AREK---PA 762
+N +L+++ +ISH PV D +CNG QH + L D A +NL+ +R+K P
Sbjct: 949 LNYKNSLKNNDT-FYISHFPVQLDATCNGFQHLSLLTADEPLAGQLNLIPESRDKDSDPK 1007
Query: 763 DVYSGIAARV--------------LVIIQRDAQRDPAVFPDALR---------AKLLLSQ 799
D Y+ I ++ + I+ ++ D V + + LL +
Sbjct: 1008 DFYTYICFKLKDHLVKKKGDLESKIKKIEISSKLDLEVIEEKILPIKEEIDSIDNLLKLE 1067
Query: 800 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS-------------- 845
+ RKL+K +M Y ++ + I + + E+ +
Sbjct: 1068 LHRKLIKIPIMVKPYNASFYQMVNYILEQFDKFLVNNEDLNSYNIKFPERLLQKNDKHNI 1127
Query: 846 -----------CYAAKVTLTA-LGEM----FQAARGIMSWLGECAKIIASENQPVRWTTP 889
Y TL + E+ F R +L A+I N + W P
Sbjct: 1128 FIYKHDKNIILIYKDFYTLVKNIEELIYTEFPKLREFNDYLRRVAEICCQLNLTISWILP 1187
Query: 890 LGLPVVQPYRK---LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
GL V Q Y+ + H + + L ++ K +Q A PN +HSLD + + +
Sbjct: 1188 TGLNVNQNYQDFQAIRLHPFRYKSKTFKLLIKSNKTNKAKQIRALMPNLIHSLDAASLAL 1247
Query: 947 TAVACRKAGL--TFAGVHDSYWTHACDVDEMNRILREKFVELY 987
A K F +HD + +++E+ + ++ ++++Y
Sbjct: 1248 IVDAYFKENKINNFFAIHDCFAVTPNNIEELIKKIKLVYIKIY 1290
>gi|159145024|gb|ABW90146.1| RNA polymerase [Pleurotus ostreatus]
Length = 967
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 138/623 (22%), Positives = 261/623 (41%), Gaps = 122/623 (19%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTV-----KRTPKKQLEPVFEALDT 513
+PM+ P KW+ G + L + RD + K Q+ V +
Sbjct: 273 LPMICEPKKWSENTTGG-YLLSEFNELNKNISIVRDNPYMKEHSKISKDQISTV----NY 327
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVK 573
L N + +NN +L L W + + N + P E ++ K +K
Sbjct: 328 LNNIPFEINNTMLDYLLLEWKNTNSVI-FKEYNKLH-PLSKELDNNNLDSK-------MK 378
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
KE + +S + L+++ M+ E+ Y P +DFRGR YP+ YL++ GSDL R +L
Sbjct: 379 KEILKHNSIHWNYSNILNISALMR-EQTIYLPTFLDFRGRVYPIPVYLSYQGSDLARSLL 437
Query: 634 EFAE-GRTLGKSG---------------------LHWLKIHLANLYAGGVDKLSHEGRLA 671
F G + + + ++K++LAN++ G++KL+ R+
Sbjct: 438 LFKNVGLKIDYNNIIQQIVDKNIKNKLKKLILNDIDYVKLYLANVF--GLNKLNRNNRIK 495
Query: 672 -FTENHLDDIF-DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
F EN + ++ + + + ++ KA++P Q ++ + + ++ E P+
Sbjct: 496 WFNENIKEMLYLLNNENTIFNEKFLNKAKEPAQFISCLLEYNKYEQNIITEI---KTPIL 552
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVF 787
D +C+G+QH +AL D A VNL+ +++P+D Y V+ I+
Sbjct: 553 FDATCSGIQHLSALTSDIEIAKLVNLIESTKDEPSDFYEFSITNVVNTIEN--------L 604
Query: 788 PDA---LRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGA 844
PD+ L+ KLL + R +K ++MT Y VT IG D++ + + +EEA + +
Sbjct: 605 PDSDSHLKNKLLKLNLKRSFLKHSIMTVPYNVTNIGIADKLSEQFLKIYISLEEATILQS 664
Query: 845 SCYAAKVTLTALGEM------------FQAARGIMSWLGECAK---IIASENQ------- 882
A L+ + + F + + S + + K II ++N+
Sbjct: 665 KGLIASNLLSKIDSIDNTQTKNIKAKGFYIYKPLNSIIKDNFKQDEIIFTQNELNKLGNI 724
Query: 883 -------------------------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL- 910
PV W TP G+ V K+ + V+T++
Sbjct: 725 IKQTVLSLIPPFTKLKNYFDSIIDILNILEMPVYWITPSGMKVSVNSLKMNQKKVRTNML 784
Query: 911 ---QILTLQRETEKVMVKRQRTAFPPNFVHSLDGS--HMMMTAVA-CRKAGLTFAGVHDS 964
+ +T+ T+ + +T PNF+HSLD S HM++ + + + +HD
Sbjct: 785 KSSKPITILVPTDSLDYSSIKTGLMPNFIHSLDASNIHMLINLIIQLQIKNMNLYTIHDC 844
Query: 965 YWTHACDVDEMNRILREKFVELY 987
+ T ++ + ++++ F ++Y
Sbjct: 845 FATDYKNIALLEILIKKSFTDIY 867
>gi|71409787|ref|XP_807220.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70871174|gb|EAN85369.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 199
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 16/198 (8%)
Query: 847 YAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR------WTTPLGLPVVQPYRK 900
Y + L +LG F+ + W+ E +I E QP WTTPLGL V QPY+
Sbjct: 4 YLREKVLESLGISFRETQNCRRWITEVTNMIW-EAQPAELRTALCWTTPLGLVVRQPYKV 62
Query: 901 LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG 960
T+ T + + ++Q TA PN +HSLD +H+ MTA+ + GL+
Sbjct: 63 RKEITLFTPHGCSRIPGDAFSAASRKQLTAIAPNLIHSLDATHLAMTAIEMQNLGLSMMA 122
Query: 961 VHDSYWTHACDVDEMNRILREKFVELYEM--PIFENLLDSFQKSF------PKLVFPPLP 1012
VHDSYWT+ACD+ ++++LR++FV LY P++E L + +++++ + P P
Sbjct: 123 VHDSYWTYACDLPVLSKVLRQQFVTLYSKYDPLWE-LKEQWEEAYFMDLRRHGTLLPDPP 181
Query: 1013 ERGDFDLREVLGSPYFFN 1030
+RGD DL VL SPYFF+
Sbjct: 182 KRGDLDLSVVLDSPYFFS 199
>gi|224072667|ref|XP_002335917.1| predicted protein [Populus trichocarpa]
gi|222836347|gb|EEE74754.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 69/90 (76%), Gaps = 5/90 (5%)
Query: 348 RKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLAD 407
RKKVTDLIKKQKLPAVR+IVKG+DD KPW DARAKVGSR+IELL QTAYIQ P DQLAD
Sbjct: 14 RKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLAD 73
Query: 408 APPDIFPAFTHALRTVSKETKGGSKKYGVI 437
+ PAF H RTVS E KYGVI
Sbjct: 74 TSSEPRPAFVHTFRTVSYEN-----KYGVI 98
>gi|2500645|sp|Q01521.1|RPOP_PODAS RecName: Full=Probable DNA-directed RNA polymerase
gi|4585700|emb|CAA43116.2| RNA polymerase [Podospora anserina]
Length = 948
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 134/584 (22%), Positives = 253/584 (43%), Gaps = 70/584 (11%)
Query: 443 VLKGLERTARHMVIPY-MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK 501
+LK L V+P +PM+V P +T G + Y+ + K++ + T
Sbjct: 325 ILKVLPEDGTLFVLPKKIPMIVKPKPYTTRVNGGYLSNDLYI-NENIVKEKWNLRDNTQI 383
Query: 502 KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQ 561
+F+ ++ L + +++N VL ++ ++ +L+D P P +
Sbjct: 384 LHFNQIFDLVNNLSSIGYKINTDVLDFIE-LYGSDYFKNELID----PRYSHPLLKKSKL 438
Query: 562 LRKWQWKVRNV--KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
+K + ++ + KKE +E L +A ++ F+ P N DFRGR Y
Sbjct: 439 TKKEKMELDSFLAKKELQEN---------ILGLAEIFRNIPEFFIPVNADFRGRVYCTPE 489
Query: 620 YLNHLGSDLCRGILEFAE-GRTLGKS--GLHWLKIHLANLYAGGVDKLSHEGRLAFTENH 676
YLN+ +DL + +L F++ GR K L +LKI+ + + G+DKLS R+ + + +
Sbjct: 490 YLNYQSTDLAKSLLLFSKPGRMYKKDYIALSYLKIYGGS--SFGLDKLSANDRIKWVDKN 547
Query: 677 LDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT---EALRSSSPETFISHIPVHQDGS 733
L++I K + +A++ F LA CI L + F +++P+ D +
Sbjct: 548 LNNI-----KNYRNGKLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQMDAT 602
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAR---EKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
CNG QH + L D+ + +NL + P D Y+ + + ++ + + + P
Sbjct: 603 CNGFQHLSLLSLDSNLSKELNLSESTWDDVPKDFYTFLVVCFIDYLKTELLENKNLTPKE 662
Query: 791 LRA--KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL------F 842
+ +L+ ++ R+++K+ +MT Y V+ + I+ G +E+ L
Sbjct: 663 SESYNRLINMKIIREIIKKGIMTIPYNVSNFSLINYIR-----EGFELEDNSLEWYIYKN 717
Query: 843 GASCYAAKVTLTALG--------EMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
S + T LG E F ++ +L + A++ P+ WT P GL V
Sbjct: 718 EPSIRLKSLDFTVLGKGLRKVLHEKFHKLDLLLKYLDQVARVCTLLEIPIIWTLPTGLVV 777
Query: 895 VQPY--------RKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
Q Y + K S+++L + +Q TAF PN VHSLD + + +
Sbjct: 778 RQSYMIRDEVRIKPFNHSNKKFSMKVLNKTQFNN----SKQITAFMPNLVHSLDAASLTL 833
Query: 947 TAVACRKAGL---TFAGVHDSYWTHACDVDEMNRILREKFVELY 987
K + +HD + A ++ + +L+ +++LY
Sbjct: 834 LLDFYFKESIDVKNIYTIHDCFAVPANKMECLISLLKLTYIKLY 877
>gi|345870379|ref|ZP_08822332.1| DNA-directed RNA polymerase bacteriophage type [Thiorhodococcus
drewsii AZ1]
gi|343921951|gb|EGV32660.1| DNA-directed RNA polymerase bacteriophage type [Thiorhodococcus
drewsii AZ1]
Length = 1072
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 183/420 (43%), Gaps = 76/420 (18%)
Query: 501 KKQLEPVFE----ALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPET 556
+K P F+ A++ WR+N +L W+ +L LV+ P
Sbjct: 314 RKHRSPNFQRYVAAINVQQAVHWRINRPLLQ-----WT--QQLIALVN-------APPAN 359
Query: 557 EDEAQLRKW------QWKVRNVKKENRERHSQRCDIEL------KLSVARKMKDEEGFYY 604
+D+A LR W + + N ++ ER ++ D L +L + + D FY
Sbjct: 360 DDDASLRDWIKDHLYRPRPANGTRKTFERPAEFLDNPLASRALDELCPSDPLVDPPTFYL 419
Query: 605 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA------ 658
P D+RGR YP +L G DL RG+LEFA G+ L +SG+H L+ H ANL
Sbjct: 420 PWKADYRGRIYPQTSWLTPQGGDLQRGLLEFARGQVLNESGVHALRRHGANLVERSRLLT 479
Query: 659 --GGVDK--LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
G D+ ++ R +T +H I SA PL W A+ P Q LA C+ +
Sbjct: 480 DLGISDRQVVTLNERERWTRDHEAAILASAADPLAEPFWRDVADKPMQFLAFCLAYRQW- 538
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR--EKPADVYSGIAARV 772
P+ I H+PV DG+CNG+QH AAL + A AVN++ R + PAD+YS +A
Sbjct: 539 -KQHPDARI-HLPVQIDGTCNGIQHIAALTGNRELAEAVNVLPRANDLPADIYSELAEAA 596
Query: 773 L-----VIIQRDAQR--------DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYI 819
L + I + R D + DA L +RK K+ VMT YG
Sbjct: 597 LKTLGHLPIPKGQARHRHGLEWGDAWLATDAAPGAWL----NRKTAKRVVMTIPYGAG-- 650
Query: 820 GARDQIKRRLKERGAPMEEAELFGASCYAAK----VTLTALGEMFQAARGIMSWLGECAK 875
R + GA +E E + + LTAL E AA ++ +C K
Sbjct: 651 --------RSAQAGAVLEAIEKRLIEVWDERPPDESKLTALVEWTNAASARKDFVRKCTK 702
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 43/195 (22%)
Query: 834 APMEEAELFGASCYAAKVTLTAL-GEMFQAARGI---MSWLGECA--------------K 875
A E FGA Y A+V + L G + + RGI +WLGE A K
Sbjct: 756 AEWERLRTFGA--YVARVLVEQLRGALDRNYRGIGEFSNWLGEVAESVSFPQWTKEQRKK 813
Query: 876 IIASENQ------------------PVRWTTPLGLPVVQPYRKLGRHTVKTSLQ----IL 913
I ++ Q P+ W TPLG PVVQ R +V + +
Sbjct: 814 IDDAKTQCKKKEAEKFEEKPDCLGLPLIWLTPLGFPVVQNKFASARTSVSARIGGQAVKI 873
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG-VHDSYWTHACDV 972
++R TE+V ++QR A PN +HSLD +H+M+T + + + G +HD H
Sbjct: 874 DVRRLTEEVDPQKQRAALLPNLIHSLDATHLMLTLLEAKAREVHDIGSIHDCLLCHPNQA 933
Query: 973 DEMNRILREKFVELY 987
+ + +++R+ F ELY
Sbjct: 934 ETLAQVVRQTFAELY 948
>gi|39935593|ref|NP_947869.1| DNA-dependent RNA polymerase [Rhodopseudomonas palustris CGA009]
gi|39649446|emb|CAE27968.1| possible DNA-dependent RNA polymerase [Rhodopseudomonas palustris
CGA009]
Length = 540
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 161/374 (43%), Gaps = 45/374 (12%)
Query: 689 EGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
E +W +A+ PF LA CI LT AL ++ +P DGSC+G QH A R +
Sbjct: 4 EALSFWTQADKPFLFLAACIELTNALAYGP--GYVCGLPCSWDGSCSGAQHLCAATR-SE 60
Query: 749 GAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVD-RKLVKQ 807
A VNL+ ++ D+Y+ I+ A++ A D + + +L + D RK+ K+
Sbjct: 61 DAWKVNLIGNDEVHDLYT--------IVGNAAKQSMARDTDPMVSTILAYEGDWRKVFKR 112
Query: 808 TVMTSVYGVTYIGARDQ--------------IKRRLKERGAPMEEAELFGASCYAAKVTL 853
MT+ YG G Q K+R K + + AA
Sbjct: 113 NTMTTFYGSKGFGMAQQHMDDLMEPLSREVMQKKRAKHPFGQTRKEHHAASRLLAAHAAA 172
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK---------LGRH 904
GE+ A + M ++ + + ++A E +P+ WTTP+GLP Y + H
Sbjct: 173 AIKGEIPLAIKA-MEFIQKLSAMMAHEGKPLEWTTPIGLPWSNRYHDPVTERVNLWMHDH 231
Query: 905 TVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHD 963
V+ + + + + PNFVH+ D +H++ T A R G+T FA VHD
Sbjct: 232 GVRRPFRPVVADGYKKTINKNHSVNGSAPNFVHACDAAHLLRTVNAARAEGITQFALVHD 291
Query: 964 SYWTHACDVDEMNRILREKFVELYE-----MPIFENL---LDSFQKSFPKLVFPPLPERG 1015
S+ + +I+RE+FV +YE + E LD LV G
Sbjct: 292 SFGSLPSHAARFRQIIREEFVRMYEEHDVLTEVLEQAKCDLDEHNDKLSALVDMRADLTG 351
Query: 1016 DFDLREVLGSPYFF 1029
+++EVL + Y F
Sbjct: 352 KLNIKEVLNAEYAF 365
>gi|345496230|ref|XP_001601060.2| PREDICTED: hypothetical protein LOC100116609 [Nasonia vitripennis]
Length = 570
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 118/270 (43%), Gaps = 57/270 (21%)
Query: 797 LSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTAL 856
+S++ RKL + + Y V + G D I + +F Y K L A+
Sbjct: 322 ISKLKRKLNDLGLTVAPY-VIFCGRLDNITKAFV----------VFDTIRYEIKDPLKAV 370
Query: 857 GEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQP-----YRKLGRHTV----- 906
Q + + SW A W L V P Y +L H V
Sbjct: 371 EACLQISIALHSW--------AVLTALALWKNILFRAVNSPAGKIFYFRLVLHNVLFKFH 422
Query: 907 ----KTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
+ + IL VM +Q+ AF PNFVHSLD SHMM+T++ C +AG+TF VH
Sbjct: 423 KKFYRNLINILIFLNRKPNVM--KQKNAFAPNFVHSLDSSHMMLTSIHCERAGITFVSVH 480
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF------------------- 1003
D YWTH C D MN+I RE+FV L+ PI E+L + F
Sbjct: 481 DCYWTHPCTADIMNKICREQFVALHSEPILEDLSKFLIEKFGFDDTDVLEKNKNIDIGIL 540
Query: 1004 -PKL--VFPPLPERGDFDLREVLGSPYFFN 1030
KL +P++G+FDL+ VL S YFF+
Sbjct: 541 RDKLNSTLSKVPQQGNFDLKGVLSSTYFFS 570
>gi|147865940|emb|CAN78837.1| hypothetical protein VITISV_037333 [Vitis vinifera]
Length = 105
Score = 119 bits (298), Expect = 9e-24, Method: Composition-based stats.
Identities = 55/68 (80%), Positives = 59/68 (86%)
Query: 630 RGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 689
R ILE AE LGKSGLHWLKIHLANLYA GVDKLS+EG +AFTENHL+DIFDSAD+PLE
Sbjct: 38 RAILELAEEHLLGKSGLHWLKIHLANLYAXGVDKLSYEGCVAFTENHLEDIFDSADRPLE 97
Query: 690 GRRWWLKA 697
GRRW L A
Sbjct: 98 GRRWCLFA 105
>gi|195562312|ref|XP_002077502.1| GD13252 [Drosophila simulans]
gi|194202617|gb|EDX16193.1| GD13252 [Drosophila simulans]
Length = 151
Score = 118 bits (296), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 77/131 (58%), Gaps = 20/131 (15%)
Query: 920 EKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRIL 979
E+ + +Q+ AFPPNF+HSLD SHMM+T++ C + G+TF VHD +WTHA V E+NR+
Sbjct: 21 ERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANSVPELNRMC 80
Query: 980 REKFVELYEMPIFENLLDSFQKSFP--------------------KLVFPPLPERGDFDL 1019
RE+FV L+ PI E L + + ++ LP++GDFDL
Sbjct: 81 REQFVALHSQPILEQLSEFMRHTYSFKDSDFINDGSVEDLSKRQLNRTLKQLPQKGDFDL 140
Query: 1020 REVLGSPYFFN 1030
R VL S YFF+
Sbjct: 141 RNVLDSVYFFS 151
>gi|1236336|gb|AAB01080.1| T3/T7-like RNA polymerase, partial [Pycnococcus provasolii]
Length = 217
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 103/220 (46%), Gaps = 70/220 (31%)
Query: 812 SVYGVTYIGARDQIKRRLKERGAP--MEEAELFGASCYAAKVTLTALGEMFQAARGIMSW 869
SVYGVT+IGARDQI+ RL+ERG P +E E+ + YA +T++ L ++FQ AR +M+W
Sbjct: 1 SVYGVTWIGARDQIESRLRERGWPAGLERREV---ARYATDMTMSGLADVFQDARNVMAW 57
Query: 870 LGECAKIIAS-------------------------------------------------E 880
LG CA I + E
Sbjct: 58 LGTCASITSKNWKFEKGGIEIDPEEVDEKEFRKRSFNPMVRTRDVEMCKQRELHSNADRE 117
Query: 881 NQPVRWTTPLGLPVVQP--------------YRKLGRHTVKTSLQILTLQRETEK--VMV 924
+ + W L + QP YRK+ + T LQ +++ +E V+
Sbjct: 118 KEEIEWVDDPNLHIGQPMRWTTPMGMVCVQPYRKVDNKKINTVLQTISVDIHSEALPVVS 177
Query: 925 KRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDS 964
+QR+AF PN+VHS+D +HMM TA C G+ FAGVHDS
Sbjct: 178 AKQRSAFAPNYVHSIDSAHMMKTAEECIGRGMDFAGVHDS 217
>gi|224157115|ref|XP_002337803.1| predicted protein [Populus trichocarpa]
gi|222869831|gb|EEF06962.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 77/131 (58%), Gaps = 26/131 (19%)
Query: 309 QEVRIHKFLEKTKKKNETKN--KEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRI 366
+++RIH LEKT+KK E N K EG ES V EQE LRKK
Sbjct: 2 KQIRIHNILEKTRKKKEKANDSKNGVEG-ESPAVMKEQENLRKK---------------- 44
Query: 367 VKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKE 426
+DD KPW DARAKVGSR+IELL QTAYIQ P DQLAD+P + PAF H RTVS E
Sbjct: 45 --AKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTVSYE 102
Query: 427 TKGGSKKYGVI 437
KYGVI
Sbjct: 103 N-----KYGVI 108
>gi|194380978|dbj|BAG64057.1| unnamed protein product [Homo sapiens]
Length = 927
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 25/333 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLAPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVPLPEK---PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
++ P P + P + A+ + + ++ + +K RE HS R + +LS+A+ ++D F
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-F 794
Query: 603 YYPHNVDFRGRAYPMHPYLNH-LGSD--LCRGILEFAEGRTLGKSGLHWLKIHLAN-LYA 658
+ PHN+DFRGR YP P+ H L S + + + + GL ++ +H +A
Sbjct: 795 WLPHNMDFRGRTYPCPPHFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVSVHDCYWTHA 854
Query: 659 GGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 691
V ++ R F H + I + L R
Sbjct: 855 ADVSVMNQVCREQFVRLHSEPILQDLSRFLVKR 887
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 19/118 (16%)
Query: 932 PPNFVHSLDGSHMMMTAVACRKA-------GLTFAGVHDSYWTHACDVDEMNRILREKFV 984
PP+F+HSLD SHMM+TA+ C ++ GLTF VHD YWTHA DV MN++ RE+FV
Sbjct: 810 PPHFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVSVHDCYWTHAADVSVMNQVCREQFV 869
Query: 985 ELYEMPIFENLLDSFQKSFP------------KLVFPPLPERGDFDLREVLGSPYFFN 1030
L+ PI ++L K F K +P+ G FDL +V S YFF+
Sbjct: 870 RLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQVKRSTYFFS 927
>gi|2281469|gb|AAB64106.1| RNA polymerase [Ascosphaera aggregata]
Length = 441
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 167/415 (40%), Gaps = 57/415 (13%)
Query: 644 SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQC 703
+ +++ KI+ AN + +DKLS + R+ + ++++DDI + + L KAE
Sbjct: 6 TAINYFKIYGANCFGNKIDKLSFDDRIKWVDDNIDDIINFKNFNLIN-----KAESKLLF 60
Query: 704 LAVCINLTEALRSSSPET---FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR-- 758
+A C + L + E+ FISH+P+ D SCNG QH A L RD A +N
Sbjct: 61 IAFCFEFNKFLNFLNDESSSYFISHLPIQLDASCNGFQHIAMLVRDGNLAKTLNFGISYW 120
Query: 759 -EKPADVYSGIAARVLVIIQ---RDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVY 814
P D YS IA + D R K L ++R ++K+ +MT Y
Sbjct: 121 DNIPDDFYSFIATHLKEFYDYALNSKSSDNKTIESIYRLKDL--TINRAMIKKAIMTIPY 178
Query: 815 GVTYIGA------------RDQIKRRLKERGAPME---------EAELFGASCYAAKVTL 853
T + +DQI K E + F K L
Sbjct: 179 NATSVALIDYLKSDFDLIPKDQIPEEFKGDDLVYEFKNDKNIILKGNDFVVLYKGIKYIL 238
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
T ++F + + + I + W P GL + Q Y K T KT + L
Sbjct: 239 T---KVFPSLEKLGEYFNSIVDICCLFKLTIPWVLPSGLVIEQSYAK----TSKTRITPL 291
Query: 914 TLQRETEKVMV--------KRQRTAFPPNFVHSLDGSHMMMTAVA-CRKAGL-TFAGVHD 963
+ + ++ V +Q+ PNF+HSLD S ++M + K+G +HD
Sbjct: 292 NYSKISYQINVVDKSNFDKNKQKAGLMPNFIHSLDSSTLIMVLRSHFNKSGYKNIYAIHD 351
Query: 964 SYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFD 1018
+ + ++ ++ L+ ++ LY + L +F +F + L E D D
Sbjct: 352 CFAVTSNNMQQLIDCLKLTYIYLYSN---KGYLRNFDDNFKNYLKNILNENFDLD 403
>gi|227976930|gb|ACP44057.1| putative RNA polymerase [Vibrio phage 5486]
gi|227976932|gb|ACP44058.1| putative RNA polymerase [Vibrio phage 4e]
Length = 209
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L + R+ DE+ Y+P VD+R R Y +LN GSD+ + +L + LGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLFWL 60
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQC-LAVCI 708
K H+A + G DK E R +TE +D I + PL K D F C LA I
Sbjct: 61 KSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYS 766
L EAL S PE + S+I V D + +G QH++A+ RD +G NL AD+Y
Sbjct: 117 QLIEALDSPDPEKYKSNIAVALDATNSGGQHFSAMLRDPIGGKLTNLFWDGNLTKADLYM 176
Query: 767 GIAARVLVIIQRDAQRDP 784
+ R I+ A RDP
Sbjct: 177 DVKQRTDSKIKV-ALRDP 193
>gi|227976920|gb|ACP44052.1| putative RNA polymerase [Vibrio phage 6e]
gi|227976924|gb|ACP44054.1| putative RNA polymerase [Vibrio phage 5312]
gi|227976926|gb|ACP44055.1| putative RNA polymerase [Vibrio phage 512]
gi|227976928|gb|ACP44056.1| putative RNA polymerase [Vibrio phage 5e]
Length = 209
Score = 109 bits (273), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L + R+ DE+ Y+P VD+R R Y +LN GSD+ + +L + LGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLFWL 60
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQC-LAVCI 708
K H+A + G DK E R +TE +D I + PL K D F C LA I
Sbjct: 61 KSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYS 766
L EAL S PE + S+I V D + +G QH++A+ RD +G NL AD+Y
Sbjct: 117 QLIEALDSPDPEKYESNIAVALDATNSGGQHFSAMLRDPIGGKLTNLFWDGNLTKADLYM 176
Query: 767 GIAARVLVIIQRDAQRDP 784
+ R I+ A RDP
Sbjct: 177 DVKQRTDSKIKV-ALRDP 193
>gi|224116154|ref|XP_002331975.1| predicted protein [Populus trichocarpa]
gi|222832099|gb|EEE70576.1| predicted protein [Populus trichocarpa]
Length = 183
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 89/142 (62%), Gaps = 23/142 (16%)
Query: 39 SPEKI-----SSVMWRNVAKQAI----SLHLKKP-FSRAYSFLGISQDSILRDKVKFVCL 88
+P+K+ ++VMWRNVAKQA S L P F R YSFLG S++ I +K+KF L
Sbjct: 18 TPKKVYAGFRAAVMWRNVAKQATLKTQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSL 77
Query: 89 -DMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVLKNDNF--------WCPRGYATVAEAV 139
+ PR + IGEI HED+MG+ SF L+N + +CPRGY +VAEAV
Sbjct: 78 YNTSPR----LSFRAIGEISTHEDFMGKPSFIFLRNSDSTNGNRCGGFCPRGYVSVAEAV 133
Query: 140 SSTDVEEDVSIVEEIQELLQEM 161
SSTDVE+DVS +E++ELL EM
Sbjct: 134 SSTDVEDDVSGADEVRELLPEM 155
>gi|224148781|ref|XP_002336713.1| predicted protein [Populus trichocarpa]
gi|222836570|gb|EEE74977.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 57/67 (85%)
Query: 484 MRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLV 543
MR HGAKQQR+ VK P+KQL+PVFEALDTLGNT+WRVN RVLSV DRIWS GG LADLV
Sbjct: 1 MRIHGAKQQREAVKTAPRKQLQPVFEALDTLGNTRWRVNKRVLSVGDRIWSNGGCLADLV 60
Query: 544 DRNDVPL 550
D +DV +
Sbjct: 61 DHSDVSI 67
>gi|207345730|gb|EDZ72453.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 671
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 127/537 (23%), Positives = 225/537 (41%), Gaps = 60/537 (11%)
Query: 52 AKQAISLHLKKPFS---RAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILN 108
A A S +KKP R SF G S + + +D K + +D + G+ + +G L
Sbjct: 176 ASNASSDSIKKPSLDPLREVSFHG-STEVLSKDAEKLIAVDTI--GMRVIRHTLLGLSLT 232
Query: 109 HEDYMGRTSFGVLKNDNF--WCPRGYATVAEAVSSTDVEEDVSIVEE---IQELLQEMKK 163
E + F NDN P +++ ++ + +EE + L +
Sbjct: 233 PEQKEQISKFKFDANDNVLKMKPTKNDDNNNSINFFEIYNSLPTLEEKKAFESALNIFNQ 292
Query: 164 EEQREGEN-GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQK 222
+ Q+ EN + R R K R + IE K Y E+L + E+
Sbjct: 293 DRQKVLENRATEAARERWKHDFEEAKAR----GDISIEKNLNVKLWKWYNEMLPLVKEE- 347
Query: 223 LAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLM 282
+ + +SL L + ++ ++ ++ +++ Y PY + M VIT+ +L+
Sbjct: 348 ----INHCRSL-------LSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELL 396
Query: 283 GLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTT 342
L TGG R +A +G AIE E R + L+ E + + N +
Sbjct: 397 KLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK----------SESQAFRDVNKKSP 446
Query: 343 EQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SP 401
E +KL + + + ++ + + W Q RA++GS +I +L Q A +
Sbjct: 447 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 497
Query: 402 ADQLADAPPD-IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPY 458
D + A PAF H + GS K GV++ + +++ L ER +
Sbjct: 498 VDPVTKAKVHGEAPAFAHGY-----QYHNGS-KLGVLKIHKTLIRQLNGERLIASVQPQL 551
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNT 517
+PMLV P W + G + + S ++RT + +Q +K ++ V++ L+ LG T
Sbjct: 552 LPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRT 611
Query: 518 KWRVNNRVLSVLDRIWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNV 572
W VN +V V+ ++W+ G D+ D V P P+ D LR W+ +V+ +
Sbjct: 612 PWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTI 668
>gi|11466092|ref|NP_052999.1| rna polymerase [Pleurotus ostreatus]
gi|5107017|gb|AAD39926.1|AF126285_2 RNA polymerase [Pleurotus ostreatus]
Length = 903
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 134/628 (21%), Positives = 261/628 (41%), Gaps = 136/628 (21%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDT-----VKRTPKKQLEPVFEALDT 513
+PM+ P KW+ G + L + RD + K Q+ V +
Sbjct: 273 LPMICEPKKWSENTTGG-YLLSEFNELNKNISIVRDNPYMKEHSKISKDQISTV----NY 327
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDV-PLPEKPETED-EAQLRKWQWKVRN 571
L N + +NN +L L W + + N + PL ++ + + ++Q++K K +
Sbjct: 328 LNNIPFEINNTMLDYLLLEWKNTNSVI-FKEYNKLHPLSKELDNNNLDSQMKKEILKHNS 386
Query: 572 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+ H +I L+++ M+ E+ Y P +DFRGR YP+ YL++ GSDL +
Sbjct: 387 I-------HWNYSNI---LNISALMR-EQTIYLPTFLDFRGRVYPIPVYLSYQGSDLAKI 435
Query: 632 ILEFAEGRTLG-------------------------KSGLHWLKIHLANLYAGGVDKLSH 666
F + +G + + ++K++LAN++ G++KL+
Sbjct: 436 ---FIIIKNVGLKIDYNNIIQQIVDKNIKNKLKKLILNDIDYVKLYLANVF--GLNKLNR 490
Query: 667 EGRLAFTENHLDDIFD--SADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFIS 724
R+ + +++ ++ + D + ++ KA++P Q ++ + + E IS
Sbjct: 491 NNRIKWFNDNIKEMLYLLNNDNKIFNEKFLNKAKEPAQFISCLLGYNKY-----EENIIS 545
Query: 725 HI--PVHQDGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYSGIAARVLVIIQRDA 780
I P+ D +C+G+QH +AL D A VNL+ +++P+D Y ++ I+ +
Sbjct: 546 EIKRPILFDATCSGIQHLSALTSDIEIAKLVNLIESTKDEPSDFYEFSITNIVNTIE-NF 604
Query: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
Q D + + KLL + R +K ++MT Y V D++ + + +EEA
Sbjct: 605 QIDSHL-----KIKLLKLNLKRSFLKHSIMTVPYNV----RADKLSEQFNKSYISLEEAT 655
Query: 841 LFGASCYAAKVTLTALGEM------------FQAARGIMSWLGECAK---IIASENQ--- 882
+ + L + + F + + S + + K II ++N+
Sbjct: 656 ILKSKGLIPSNLLNKIDSIDNTQTKNIKAKGFYIYKPLNSIIKDNFKQDEIIFTQNELNK 715
Query: 883 -----------------------------------PVRWTTPLGLPVVQPYRKLGRHTVK 907
PV W TP G+ V K+ + V+
Sbjct: 716 LGNIIKQTVLSLIPPFTKLKNYFDSIIDILNILEMPVYWITPSGMKVSVNSLKMNQKKVR 775
Query: 908 TSL----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGS--HMMMTAVA-CRKAGLTFAG 960
T++ + +T+ T+ + +T PNF+HSLD S HM++ + + +
Sbjct: 776 TNMLKSSKPITILVPTDSLDYSSIKTGLMPNFIHSLDASNIHMLINLIIQLQIKNMNLYT 835
Query: 961 VHDSYWTHACDVDEMNRILREK-FVELY 987
+HD + T ++ + IL +K F ++Y
Sbjct: 836 IHDCFATDYKNIFALLEILIKKSFTDIY 863
>gi|224171355|ref|XP_002339484.1| predicted protein [Populus trichocarpa]
gi|222875221|gb|EEF12352.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 75/114 (65%), Gaps = 13/114 (11%)
Query: 113 MGRTSFGVLKNDNF--------WCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKE 164
MG+ SF L+N +CPRGY +VAEA+SSTDVE++VS +E+QEL EM+KE
Sbjct: 1 MGKPSFIFLRNSGSTNGNRCGGFCPRGYVSVAEALSSTDVEDNVSGADEVQELQPEMRKE 60
Query: 165 EQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDM 218
E+ R R R G+GS K+R+L+ RQVKIE EAWE A EY+ELL DM
Sbjct: 61 EEH-----FSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDM 109
>gi|328751377|ref|YP_004347438.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912875|gb|ADO51620.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1041
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/508 (21%), Positives = 219/508 (43%), Gaps = 108/508 (21%)
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF-------------- 635
+++A MK+ Y P +DFRGR YP YLN+ GSD+ R +L F
Sbjct: 462 INIALLMKNN-TIYLPTFLDFRGRIYPTPNYLNYQGSDIARSLLLFKNVGNKVNYDSTVN 520
Query: 636 -------AEGRTLGK-SGLHWLKIHLANLYAGGVDKLSHEGRLA-FTENHLDDIFDSADK 686
++ L K + + ++K++L+N+Y G++KL+ R+ F +N D + +
Sbjct: 521 EILESFISKELILNKLNDIDYVKLYLSNVY--GLNKLNRRNRIRWFDDNIDDILDLLNNN 578
Query: 687 PLE-GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGR 745
E ++++KA++P Q ++ + ++ E P+ D +C+G+QH +AL
Sbjct: 579 IKEFNDKYFIKAKEPAQFISTLFEYNKFIKKEIKEI---KTPILFDATCSGVQHLSALTT 635
Query: 746 DTLGAAAVNLV--AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRK 803
D VNL+ +++P+D Y+ +L I+ + D ++K+ + RK
Sbjct: 636 DLDICKLVNLIEATKDEPSDFYNFCIKNILNNIENLPETDS-----LFKSKISKIDLSRK 690
Query: 804 LVKQTVMTSVYGVTYIGARDQIKRRL------KERGAPMEEAELFGASCYAAK-----VT 852
++K ++MT Y VT IG D+I K++ +E L S K
Sbjct: 691 MLKHSIMTVPYNVTNIGIADKIAEYFDKEFISKDKAKELENKNLIILSKVENKDESNNEN 750
Query: 853 LTALGEMFQAARGIMSW--LGECAKI----------IASENQPVRWTTPLG---LPVVQP 897
+ + ++ + ++GI + L E K+ I ++++ + + L ++ P
Sbjct: 751 IKSGKKIKKESKGIYIFKPLYEHIKVKDQDQYKDKLIFTQSELNKLGNIIKQTVLSLIPP 810
Query: 898 YRKLGRH---------------------TVKTSLQILTL-QRETEKVMVKRQR------- 928
+ L ++ + S+ I+ + QR+ ++K +
Sbjct: 811 FTHLKKYFDEIIDILRILNLPIYWETPSNMSVSMSIMLMSQRKVRSKLIKSSKPITILIP 870
Query: 929 ----------TAFPPNFVHSLDGS--HMMMTAVACRKA-GLTFAGVHDSYWTHACDVDEM 975
T PNF+HSLD S H+++ + + +HD + T ++ +
Sbjct: 871 TDNLDYESIKTGLMPNFIHSLDASNIHLLIEQILLLNIKNMNLYTIHDCFATDYKNMAIL 930
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSF 1003
++++ F ++Y EN L+ +SF
Sbjct: 931 EILIKKSFSDIY---FDENYLNKINESF 955
>gi|2370356|emb|CAA72339.1| RNA polymerase [Pichia kluyveri]
Length = 992
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 117/507 (23%), Positives = 199/507 (39%), Gaps = 111/507 (21%)
Query: 570 RNVKKENRERHSQRCDIELKLS-VARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDL 628
+NV K+ + S+R D+E ++ +A+ K+ Y+P VDFRGR Y +++ +D
Sbjct: 416 KNVVKDCLAKMSKR-DLENDMTDMAKSFKNVSKMYFPLRVDFRGRVYA-QSVISYQSTDT 473
Query: 629 CRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENH------LDD-IF 681
+ +L+F E + + +L + AN Y G+DK SH R+ + + + LD+ +
Sbjct: 474 AKALLDFGEVYKVNMDDVEYLFMSGANAY--GLDKKSHMERINWIKTNSVLMYNLDEELM 531
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
+AD L ++ L+ L +S + + S+ V+ D +CNG QH A
Sbjct: 532 RTADNKLLFVKFCLEYRKYMDAL-----------NSQQKYYYSNYMVYVDATCNGFQHMA 580
Query: 742 ALGRDTLGAAAVNLVAREK---PADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLS 798
+D L VNL K P D Y+ I VL D +D + + + L
Sbjct: 581 LTLKDPLTCYNVNLANTSKDMSPRDFYTFIKDSVL-----DNMKDMNMNKNNSVERTLEM 635
Query: 799 QVDRKLVKQTVMTSVY--GVT-----------YIGA------RDQI----KRRLKERGAP 835
+ RK++K VM Y GVT Y+G +D + K+
Sbjct: 636 GLTRKMMKTMVMIMPYNAGVTTMTKYLEDSLNYMGTYYTADEKDLVCCKGSEENKDSCRY 695
Query: 836 MEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKI------------------- 876
+ EL A +KV L M ++ L +C KI
Sbjct: 696 YKSLELNNARSPESKVPENNLANMTLTSKYSAKSLCKCKKIRTYYMDDENKIVSNKDLMF 755
Query: 877 -----------------------------IASENQPVRWTTPLGLPVVQPYRKLGRHTVK 907
+++ ++PV W+ P G+ V Q Y+ +HT K
Sbjct: 756 FINVMRKVVSDNFPVMAKFQNYLNNVSEMLSTSDKPVVWSLPTGIQVGQYYK--TKHTKK 813
Query: 908 TSL-----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT--FAG 960
SL + K+ + R + PN +HSLD + ++M A K +
Sbjct: 814 ISLSRYRRHTFNISLYDSKMDKSKSRMSLMPNTMHSLDATALIMLAEQMFKNNMNTQLCS 873
Query: 961 VHDSYWTHACDVDEMNRILREKFVELY 987
+HD + ++D M + + +Y
Sbjct: 874 IHDCFGAPISEIDTMKKTTSMTYTSIY 900
>gi|357620935|gb|EHJ72947.1| hypothetical protein KGM_20967 [Danaus plexippus]
Length = 1027
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 39/218 (17%)
Query: 459 MPMLVPPVKW-TGYDKGAHFF-------LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 510
+P PP W + GA +P YVM G ++ ++ P + PV +
Sbjct: 802 VPARSPPAPWHSATASGACLLTTTSLIRMPFYVM---GLTKR---LEEAPPATMYPVLDG 855
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVR 570
L+ LG+ W +N R+L + +++ GG + D+P P + L QWK+
Sbjct: 856 LNQLGDVPWVINQRILDLQLKVFRSGGD-----KKLDIPPPA-------SSLDASQWKME 903
Query: 571 N------------VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMH 618
+ + + HS CD KLS+A ++ F+ PHN+DFRGR Y +
Sbjct: 904 GKTGGEALRRRVVINRAKADMHSLWCDALYKLSLANHYRNV-TFWLPHNMDFRGRVYAVG 962
Query: 619 PYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANL 656
P+++ LG D R +L A R LG GL WLKIH NL
Sbjct: 963 PHVSALGPDAARALLRLAGVRPLGARGLDWLKIHAVNL 1000
>gi|291335799|gb|ADD95399.1| DNA directed RNA polymerase 2A [uncultured phage
MedDCM-OCT-S05-C849]
Length = 256
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 119/267 (44%), Gaps = 29/267 (10%)
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPA 785
IPV D +C+GLQ A L RD AA VN++ +KP D Y IA + + I
Sbjct: 9 IPVATDATCSGLQILAGLARDKSTAAMVNVIPSDKPQDAYKVIAEKCIDQI--------- 59
Query: 786 VFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGAS 845
P+ +R DRK K+T +T Y R IK LK++ +++ EL
Sbjct: 60 --PERIRPYW-----DRKCTKRTCLTIPYNAKPFSNRQYIKDALKDKDIEVDKDEL---- 108
Query: 846 CYAAKVTLTALGEMFQAARGIMSWLG-ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRH 904
K A+ +F +M W+ E A I + + W TP V Q K
Sbjct: 109 TQIVKAVRGAMETIFPGPMRVMRWIELEVANAIKDGAEQISWETPSFFRVTQRLMKYDHK 168
Query: 905 TVKTSL----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG 960
V+ L QI L E + V ++ + A PN +HSLD S + ++A K A
Sbjct: 169 IVELHLMGRCQIKVLDGE-KGVDLRHHKNATAPNLIHSLDASLLHLSAT---KFNAPIAL 224
Query: 961 VHDSYWTHACDVDEMNRILREKFVELY 987
+HDS A D+ ++ ++R+ ++ L+
Sbjct: 225 IHDSVLCRATDMTNLSTLVRDTYMHLF 251
>gi|158297512|ref|XP_317735.4| AGAP007778-PA [Anopheles gambiae str. PEST]
gi|157015231|gb|EAA12908.5| AGAP007778-PA [Anopheles gambiae str. PEST]
Length = 869
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 18/262 (6%)
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
W + A VG + +L I A A+ + PAF R +K K
Sbjct: 616 WPKAAVMGVGKFLYNILKCDLKINVNATNKANRKVKLVPAFYTLFRYEAKMAKEQ----- 670
Query: 436 VIECNPLVLKGLERTARHMV---IPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQ 491
I+ +P+++K ++ + + +PML PP W+ G + S ++R H A Q
Sbjct: 671 -IKPHPVLMKLYRKSQPDTLKFDVNLVPMLCPPQPWSTPRNGGYILAESDLIRLPHQAHQ 729
Query: 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLP 551
Q + + + + P +AL+ L + W VN ++L V+ +++ GG V LP
Sbjct: 730 QTERIDDAEPQDMYPTLDALNQLASIPWVVNGQILDVIVEVFNNGGNAKLDVPEPPSSLP 789
Query: 552 EKPETEDEAQLRKWQWKVRNVKKENRERHSQR------CDIELKLSVARKMKDEEGFYYP 605
ET +++ ++ K ++K R Q CD +LS+A +D+ F+ P
Sbjct: 790 PVTETVPRSEMSGYE-KYHLLRKRLYHRRKQGDMYSLWCDALYRLSLASHYRDK-VFWLP 847
Query: 606 HNVDFRGRAYPMHPYLNHLGSD 627
N+DFRGR YP+ P+LNHLG D
Sbjct: 848 QNIDFRGRVYPIPPHLNHLGHD 869
>gi|227976922|gb|ACP44053.1| putative RNA polymerase [Vibrio phage 1032]
Length = 209
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 101/198 (51%), Gaps = 9/198 (4%)
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L + R+ DE+ Y+P VD+R R Y +LN GSD+ + +L + LGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKKLGKRGLFWL 60
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQC-LAVCI 708
K H+A + G DK E R+A+T +D I + PL K D F C LA I
Sbjct: 61 KSHVATCF--GFDKPLFEQRVAWTNERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYS 766
L EAL S PE + S+I V D + +G QH++A+ RD +G NL AD+Y
Sbjct: 117 QLIEALDSGDPENYESNIAVALDATNSGGQHFSAMLRDPVGGKLTNLFWDGNLTKADLYM 176
Query: 767 GIAARVLVIIQRDAQRDP 784
+ R I+ A RDP
Sbjct: 177 DVKQRTDSKIKV-ALRDP 193
>gi|78212329|ref|YP_381108.1| DNA-directed RNA polymerase [Synechococcus sp. CC9605]
gi|78196788|gb|ABB34553.1| DNA-directed RNA polymerase [Synechococcus sp. CC9605]
Length = 507
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 126/547 (23%), Positives = 224/547 (40%), Gaps = 68/547 (12%)
Query: 231 KSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGE 290
K+ LGW++ + + ++ +V+Y D ++ + + KL+ + T +
Sbjct: 12 KTTSLGWWDEAAGLLPQPHLFFQLKDLEVSY---------DHVSFVALRKLIDCIHTK-Q 61
Query: 291 HGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKK 350
+ R V A IG AI++E+R F T N DE+G + ++ + K
Sbjct: 62 NQRTHVCTA---IGKAIQEELRNQFF---------TLNL-DEDGKKIRDKRLKKPRSTPK 108
Query: 351 VTDLIKKQKLPAVRRIVK---GQDD-FKPWGQDARAKVGSRVIELLTQTAYIQSPADQLA 406
+L KL RR+++ +DD ++ W + GS +++ + Y + P +A
Sbjct: 109 YRNL--GVKLSMERRLLEKGWAKDDLYQDWPSLLCTQFGSLLLDAAVKERYFEVPTKWVA 166
Query: 407 DAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR--HMVIPYMPMLVP 464
K S+K+ V+ L +RT + +V ++ P
Sbjct: 167 ---------------------KNRSEKF-VVPSPALEEHLTKRTEQIDELVTTQEVLIEP 204
Query: 465 PVKWTGYDKGAHF-FLPSYVMRTHGAKQQRDTVKRTPKKQL-EPVFEALDTLGNTKWRVN 522
P+ W D A F F Y + T R + L+TLG T ++V+
Sbjct: 205 PLDWQLQDGEARFNFSGGYHLPTTRKPNNPLCRGRHYSTRFGSDAINLLNTLGRTAFQVD 264
Query: 523 NRVLSVLDRIWSCGGRLADLVDRNDVP-----LPEKPETEDEAQLRKWQWKVRNVK-KEN 576
+V V+D W +A + P +PE + + + W+ R E
Sbjct: 265 PQVFEVIDDCWDKQHSIAGFNSPFENPQLNQEMPEHLKALENKHPDRVAWRKRQAYLHEL 324
Query: 577 RERHSQRC-DIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
++H ++ ++ L ARK F+ + DFRGR Y +L+ D R +L F
Sbjct: 325 EQKHIEKTLSVQAVLFSARKNLTRPRFWLSWSCDFRGRIYSQQSWLDPQSRDFERSVLRF 384
Query: 636 AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWL 695
A+G L + G W + + G K S R +T ++ + I A P+ W
Sbjct: 385 ADGCRLDEQGKEWAARAVGAAFGGT--KQSFASRSQWTYDNAELIAAIASDPIRHSSQWE 442
Query: 696 KAEDPFQCLAVCINLTE-ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVN 754
AE+P+Q L + ++ L+ + P + +PV D + +GLQ +A+ RD +G N
Sbjct: 443 NAEEPWQFLQLAMDWNAVVLQQTKP---LWQVPVSVDSTASGLQLLSAMRRDPVGMKWTN 499
Query: 755 LVAREKP 761
L+ E P
Sbjct: 500 LIPSEDP 506
>gi|10119856|dbj|BAB13498.1| RNA polymerase [Flammulina velutipes]
Length = 1708
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 39/270 (14%)
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAE----------GR 639
+++A KD FY+P +DFRGR YP+ Y + +DL R +L F+
Sbjct: 1132 INLAILFKDT-SFYFPTFMDFRGRIYPISTYFTYQSNDLARSLLLFSNVNHKHSDDILKN 1190
Query: 640 TLGK-------------SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFD--SA 684
T+G + L +LKI++AN+Y G DKL + R+ + ++ +++ +
Sbjct: 1191 TIGHLVSLDNLFLNCHLADLDYLKIYIANVYGNGKDKLLLKNRIKWLNSNWEEMINLYQK 1250
Query: 685 DKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALG 744
DK + + +++PFQ L+ I+L + IP+ D +C+G+QH +AL
Sbjct: 1251 DKDAFYKSYVYISKEPFQFLSSFISLYNHILYKQE----IKIPILFDATCSGIQHLSALS 1306
Query: 745 RDTLGAAAVNLVARE--KPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDR 802
++ VNL+ E P D Y+ I + + + R K L + R
Sbjct: 1307 KNIDIGKLVNLINNEDQSPNDFYT-------FAINKSIEAFNTIEDLEFREKTLKLKYSR 1359
Query: 803 KLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
K +K +MT Y G +++ ++
Sbjct: 1360 KWLKNIIMTIPYNSKEYGISQKLEEEFSDK 1389
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 869 WLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVMV 924
+ K++ N P+ W TP G+ V RK+ +KTSL + + E++
Sbjct: 1491 YFDLIIKVLKIHNLPIFWNTPAGMKVYMSTRKMESKKIKTSLIKNVNPIGITVPMEQMDY 1550
Query: 925 KRQRTAFPPNFVHSLDGS--HMMMTAVACRKA---GLTFAGVHDSYWTHACDVDEMNRIL 979
+ PN +HSLD S H+++ + L +HD + T ++ + ++
Sbjct: 1551 RSMNNGLMPNLIHSLDASNIHILVNNIIKYYGNVPNLNLYTIHDCFATDYKNMKIIEILV 1610
Query: 980 REKFVELY 987
R F+ELY
Sbjct: 1611 RLSFIELY 1618
>gi|152125995|gb|ABS29326.1| RNA polymerase [Fusarium proliferatum]
gi|152125997|gb|ABS29327.1| RNA polymerase [Fusarium proliferatum]
gi|152125999|gb|ABS29328.1| RNA polymerase [Fusarium proliferatum]
gi|152126001|gb|ABS29329.1| RNA polymerase [Fusarium proliferatum]
gi|152126003|gb|ABS29330.1| RNA polymerase [Fusarium proliferatum]
gi|152126005|gb|ABS29331.1| RNA polymerase [Fusarium proliferatum]
Length = 371
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 35/290 (12%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKK--QLEP---VFEALDT 513
+PM+V P ++T G Y++ + T K KK +++P ++ ++
Sbjct: 107 LPMIVKPKEYTITKLGG------YLLNDVEYSEPLFTSKIAYKKSSEVDPKGELYSIINN 160
Query: 514 LGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVK 573
+ T +++N +L D + + ++D N K + + + RK+Q
Sbjct: 161 MMKTPFKINKELL---DYLVLNNDKHKLIIDSNKEHEYSKIKNRTKIEERKFQ------- 210
Query: 574 KENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 633
+ S++ + L +A KD Y+P +D RGR YP YLN+ GS+L + +L
Sbjct: 211 ----QFMSEKMLEQYILKIANTFKDVPEIYFPIMLDNRGRLYPRPAYLNYQGSELAKSLL 266
Query: 634 EFAEGRTLGK---SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
FA + + S + +L + Y G++K S+E R+ + + + D I D E
Sbjct: 267 LFANPDIINRDDHSSIEYLLAYGGTCYGNGLEKKSYEARIEWVKENWDTILD-----FEN 321
Query: 691 RRWWLKAEDPFQCLAVCINL--TEALRSSSPETFISHIPVHQDGSCNGLQ 738
KA++ F LA C + +SS F +++P+ DG+CNG Q
Sbjct: 322 SDLLEKADEKFLFLAFCFEIRRFNKFLASSDFEFKTYLPIQLDGTCNGFQ 371
>gi|238604555|ref|XP_002396229.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
gi|215468398|gb|EEB97159.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
Length = 184
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 10/188 (5%)
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA-RHMVIP-YMPMLVPPVKW 468
++ PAF HA +K GVI NP V + + A R + P ++PML+ P W
Sbjct: 2 EVQPAFYHAY------VHQRGQKLGVIRLNPTVSDRMSKDAVRETLHPRHLPMLIKPKPW 55
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK-KQLEPVFEALDTLGNTKWRVNNRVLS 527
Y++G + + MR + +Q+ ++R + +E V+ LD LG+T W++N ++
Sbjct: 56 LNYNEGGYMYNRVSAMRYKDSVEQQSYLRRASELGNVELVYAGLDVLGSTPWKINKKIFD 115
Query: 528 VLDRIWSCGGRLADLVDRN-DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586
V+ +W+ G RL L D P PE+P+ + + K++N + HS RC +
Sbjct: 116 VVLEVWNSGERLGKLPPAGYDEPEPEQPKDGNPKNRVIYITKMKNWLQNKASNHSDRCSV 175
Query: 587 ELKLSVAR 594
++ +AR
Sbjct: 176 NYRVEIAR 183
>gi|387941764|gb|AFK13346.1| RNA polymerase [Yersinia phage YpP-Y]
Length = 234
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 32/214 (14%)
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRWTTPLG 891
A+ Y AK+ A+ AA M+WL AK++A+E + V W TP G
Sbjct: 24 AAGYMAKLIWEAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDG 83
Query: 892 LPVVQPYRKLGRHTVKTSLQILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDG 941
PV Q Y+K ++T L ++ L + + ++ +Q + PNFVHS DG
Sbjct: 84 FPVWQEYKK----PIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDG 139
Query: 942 SHMMMTAV-ACRKAGL-TFAGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDS 998
SH+ T V A K G+ +FA +HDS+ T D + + +RE V+ YE + + D
Sbjct: 140 SHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQ 199
Query: 999 FQKSFPKLVF---PPLPERGDFDLREVLGSPYFF 1029
F + P LP +G+ +L+++L S + F
Sbjct: 200 FADQLHESQLDKMPALPAKGNLNLQDILKSDFAF 233
>gi|224116180|ref|XP_002331981.1| predicted protein [Populus trichocarpa]
gi|222832105|gb|EEE70582.1| predicted protein [Populus trichocarpa]
Length = 187
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 64/115 (55%), Gaps = 28/115 (24%)
Query: 284 LLMTGGEHGRARVVQAACIIGDAIEQE-------VRIHKFLEKTKKKNETKN--KEDEEG 334
++MTGGEHG ARVV AAC+IGDAIEQE +RIH LEKT+KK E + K EG
Sbjct: 1 MVMTGGEHGCARVVTAACMIGDAIEQEIFSVMKQIRIHNILEKTRKKKERADDSKNGVEG 60
Query: 335 DESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVI 389
ES V EQE LRK KG+DD KP DARAK VI
Sbjct: 61 -ESPAVMKEQENLRK------------------KGKDDSKPRNADARAKARHMVI 96
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 19/20 (95%)
Query: 451 ARHMVIPYMPMLVPPVKWTG 470
ARHMVIPYMPMLVPP++W G
Sbjct: 91 ARHMVIPYMPMLVPPLRWRG 110
>gi|424586419|ref|ZP_18026000.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1030(3)]
gi|424598986|ref|ZP_18038169.1| DNA-dependent RNA polymerase family protein [Vibrio Cholerae
CP1044(17)]
gi|395974773|gb|EJH84289.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1030(3)]
gi|408042983|gb|EKG79011.1| DNA-dependent RNA polymerase family protein [Vibrio Cholerae
CP1044(17)]
Length = 368
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 33/258 (12%)
Query: 802 RKLVKQTVMTSVYGVTYIGARDQI---------KRRLKERG------------APMEEAE 840
R +K+ MT YG G RDQ+ + ++ G A +++A+
Sbjct: 110 RNWLKRNTMTFFYGSAQFGMRDQLIVDHLEPEFNKVIEVVGKDGDPTSLGFPWATLKDAK 169
Query: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
A+ A + A+ +M + +M L A++IA + +RWTTPLGL V Q Y K
Sbjct: 170 --DAATVAGNINYEAICKMAERPARVMQSLQRYAELIAKSGRKMRWTTPLGLIVEQRYEK 227
Query: 901 LGRHTVKTSLQ-----ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMM-MTAVACRKA 954
+ + V + + T QR T +V Q+ PN+VHSLD S ++ + ++ +
Sbjct: 228 VEKFKVDSMITGQKRIQTTSQRHTGEVDANGQKNGAAPNWVHSLDASLLLKVLSLGSKNH 287
Query: 955 GLT-FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV---FPP 1010
GL + VHDS+ HA D + M +L+ ++ + + + + + + P
Sbjct: 288 GLNHWRIVHDSFAVHAADTETMVTLLKNTMADMLDRDLLKRTAEELEAQIDEEYRDQIIP 347
Query: 1011 LPERGDFDLREVLGSPYF 1028
PE GD L + L S +
Sbjct: 348 FPELGDEALIDKLRSAQY 365
>gi|297738417|emb|CBI27618.3| unnamed protein product [Vitis vinifera]
Length = 50
Score = 79.7 bits (195), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/43 (76%), Positives = 40/43 (93%)
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTL 748
+CINL++ALRSS P+T ISH+PVHQDGSCNGLQH+AALGRD +
Sbjct: 1 MCINLSDALRSSPPKTTISHMPVHQDGSCNGLQHHAALGRDKV 43
>gi|242086118|ref|XP_002443484.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
gi|241944177|gb|EES17322.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
Length = 118
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 246
++R L++RQVK+E EAWE+ EYRE+ + +++LA L KSLF+GWFE L + I
Sbjct: 11 AQHRRLRLRQVKVEIEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETIT 70
Query: 247 --KEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMT 287
+ +R + KH Y L AD + VI MHK+MGLLM+
Sbjct: 71 CDRHMQRWKRVKHVYGLRQYLLLLLADKVVVIVMHKMMGLLMS 113
>gi|15147309|ref|NP_150313.1| orf218 [Spizellomyces punctatus]
gi|15100078|gb|AAK84242.1|AF404303_16 orf218 [Spizellomyces punctatus]
Length = 218
Score = 74.3 bits (181), Expect = 3e-10, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 40/185 (21%)
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
E Y P D+RGR YP ++N+ G+ L R +LEF G L +G+ I+ AN Y
Sbjct: 20 EPIYLPVFGDWRGRVYPHSTFINYQGNSLSRNVLEFYHGEVLNSNGIFSFFIYGANTY-- 77
Query: 660 GVDKLSHEGR-----------LAFTENHL---DDIFDSADKPLEGRRWWLKAEDPFQCLA 705
G+DKL+ + R L+ + L DD A L R+W++ ++P +
Sbjct: 78 GLDKLTFDERYQWVIDNSAKILSMDRDFLLGADDQLAFASFALYYRKWYINPDEPLNVI- 136
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA-DV 764
V+QD +C+GLQH ++L D A VN A DV
Sbjct: 137 ----------------------VYQDATCSGLQHISSLLADINLAKQVNTAGPSAIAGDV 174
Query: 765 YSGIA 769
Y+ +A
Sbjct: 175 YTDVA 179
>gi|331244154|ref|XP_003334718.1| hypothetical protein PGTG_16325 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313708|gb|EFP90299.1| hypothetical protein PGTG_16325 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 179
Score = 72.0 bits (175), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 612 GRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLA 671
G+ P+ LN +G ++C G+L F E + LGK GL WLKI+L+N Y G +K S +
Sbjct: 57 GQVVPIPENLNQIGDNICWGLLNFVEKKELGKDGLQWLKINLSNNY--GNNKASLDDWAK 114
Query: 672 FTENHLDDIFDSADKPLEG 690
F E L+ + DSAD+PLEG
Sbjct: 115 FIEEQLELVIDSADQPLEG 133
>gi|426386380|ref|XP_004059663.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like, partial
[Gorilla gorilla gorilla]
Length = 818
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 15/170 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + + P H + R V
Sbjct: 631 QPWPLPVQMELGKLLAEMLVQATQMPCNLDKPHRSS-RLVPVLYHVYSFRNV-------- 681
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 682 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 741
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G
Sbjct: 742 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKG 791
>gi|195159574|ref|XP_002020653.1| GL15084 [Drosophila persimilis]
gi|194117603|gb|EDW39646.1| GL15084 [Drosophila persimilis]
Length = 1427
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 153/388 (39%), Gaps = 67/388 (17%)
Query: 182 RGMGSGKYRMLKMRQVKIETEAWE--KAANEYRELL-MDMCEQKLAPNLPYMKSLFLGWF 238
RG K L Q+K+E + K+ + +E D C ++L K L W
Sbjct: 495 RGYSKAKLEQLARDQLKVELDGCITIKSIEKTKEFANADKCRERL-------KELEQSWR 547
Query: 239 EPLRDAIAKE----QERCRMAKHK-VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGR 293
+ + AI ++ + + R H + Y Y L A I + +L L G E
Sbjct: 548 KQISTAIVRDLNTLRAQVRFKPHGYMNYYTYLKSLDTAHFADILIKELYKL-GEGSETFS 606
Query: 294 ARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDE-------EGDESNTVTTEQEK 346
V Q +G+ ++Q +I + KK N T K E D NT Q+
Sbjct: 607 PTVGQLYKELGEKVQQRYQIEQ-----KKHNGTLEKVGEIYSSYCDLWDSGNT----QDN 657
Query: 347 LRKKVTDLIKKQK-------LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI- 398
R+ L+ +Q+ LP V PW + A VG + +L + I
Sbjct: 658 ARQAWQRLVHEQRESGPSMDLPEV-----------PWPSNVLAGVGRFLYNILMRDIKID 706
Query: 399 ----QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHM 454
+ + + ++ PAF R + K K + V L L R +R
Sbjct: 707 PHIMRQKSKSKTTSSQNLLPAFYTLFRNQGRLVKEEVKPHPV-------LSRLLRGSRQQ 759
Query: 455 VIPY----MPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQQRDTVKRTPKKQLEPVFE 509
+ + +PML PP W+ G + S ++R H A QQ + ++ + + L P +
Sbjct: 760 TLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAIQQWERIRASNPQHLYPALD 819
Query: 510 ALDTLGNTKWRVNNRVLSVLDRIWSCGG 537
+L+ L + WRVN ++L V+ ++ GG
Sbjct: 820 SLNQLASVPWRVNTQLLDVIIEVFQNGG 847
>gi|441628114|ref|XP_004089343.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Nomascus
leucogenys]
Length = 98
Score = 67.4 bits (163), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 944 MMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSF 1003
MM+ A+ C + GLTF VHD YWTHA V MN++ RE+F L PI ++L + F
Sbjct: 1 MMLAALHCCRKGLTFVSVHDCYWTHAAGVSVMNQVCREQFARLRSDPILQDLSRFLVRRF 60
Query: 1004 ---PKLVFP---------PLPERGDFDLREVLGSPYF 1028
P+ + +P+ G FDL V S YF
Sbjct: 61 CSDPQKILEASQLQETLQAVPKPGAFDLELVKRSTYF 97
>gi|260943572|ref|XP_002616084.1| hypothetical protein CLUG_03325 [Clavispora lusitaniae ATCC 42720]
gi|238849733|gb|EEQ39197.1| hypothetical protein CLUG_03325 [Clavispora lusitaniae ATCC 42720]
Length = 184
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 41/53 (77%)
Query: 943 HMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
H++MT +AC+++G++F VHDS+WTH DV+++N +R++FV L++ I NL
Sbjct: 2 HLLMTCLACKQSGISFVAVHDSFWTHPGDVEKLNSHIRQEFVRLHKSEIVANL 54
>gi|32455729|ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus]
gi|23200585|dbj|BAC16369.1| orf6 [Brassica napus]
Length = 1078
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 125/588 (21%), Positives = 218/588 (37%), Gaps = 102/588 (17%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHG-----------------AKQQRDTVKRTPK 501
+PM+ PPV W K + +P+Y+ G + D + +
Sbjct: 317 LPMISPPVDWYSIKKDNNPNVPTYMSDIKGGYLVGATGEFYNRFKLLTSKNIDRFYLSFR 376
Query: 502 KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR--NDVPLPEKPETEDE 559
K + E L L K+ +N +L + + L+D+ ++ E DE
Sbjct: 377 KDPSNMLEILSFLQRQKFLINKSMLKFIKDNRLALENVDLLIDQCLANINTLAAYELLDE 436
Query: 560 AQLR-------KWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRG 612
R K +++ +K EN + QR E + + Y P +DFRG
Sbjct: 437 MFYRTDLKTNIKGYFRLDELK-ENLNKRIQRARYEEFIFQLADAYADYPLYLPAFLDFRG 495
Query: 613 RAY---PMHPYLNHLGSDLC---------RGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
R Y +H + L L I F+E R SG++ L I A G
Sbjct: 496 RIYRSGVLHFHERDLAKSLIIFSNSEKDINEINNFSENRI--DSGIYNLAI------ATG 547
Query: 661 VDKLSHEGRLAFTENH---LDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT------ 711
++ + E++ +++ + LE R A+DPFQ L+ + L
Sbjct: 548 ---FKYQKFSNYKESYDWIKNELIPNQSNILEFAR---NADDPFQFLSKALYLLYFISEN 601
Query: 712 ---EALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV--AREKPADVYS 766
+ SS ++ IPV QD S + Q + L + N++ + +K D+YS
Sbjct: 602 EKGTSFYSSDLRYLLNEIPVSQDASASAYQIMSFLLLNEDLGKGTNMIYGSEDKIQDLYS 661
Query: 767 GIAARVL-VIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI 825
+ ++ +++ D D ++ +Q+DRK VK+ M +YG T + + I
Sbjct: 662 SLKDELVEYLLKTKCSNDYPQCEDFVK-----TQIDRKFVKRLFMPLIYGKTIMSMTNDI 716
Query: 826 KRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR 885
K ER P + C L F +M L + N+PV
Sbjct: 717 K-LYSERKLPYKAYFKIANDC------LEFWRMKFPDIVNLMKLLNLVGWFKSQMNKPVL 769
Query: 886 WTTPLGLPVVQPYRKLGRHTVKTSLQI----------LTLQRETEKVMVKRQRTAFPPNF 935
+ L Q Y K +VKT + I +TL+ T + +++ + + NF
Sbjct: 770 YGHML-FTTHQFYTK----SVKTQISIYDRKTKKRHRVTLKLPTPERDIRKSQVSTCVNF 824
Query: 936 VHSLDGSHMMMTAVACRK--AGLTFAGVHDS-----YWTHACDVDEMN 976
+H D M+ + + VHD+ Y+++ D+ N
Sbjct: 825 IHQRDACIAMLVVDKLNRYHEHASMYTVHDNFITSPYYSNIIDISNQN 872
>gi|437713206|ref|ZP_20827292.1| DNA-directed RNA polymerase, bacteriophage [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
gi|435286830|gb|ELO64073.1| DNA-directed RNA polymerase, bacteriophage [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
Length = 111
Score = 63.9 bits (154), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 930 AFPPNFVHSLDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELY- 987
A PNFVH D SH+++T G+T A +HDS+ THA + ++ L+ + V +Y
Sbjct: 9 AAAPNFVHGHDASHLILTVCHLVDEGVTSIAVIHDSFGTHADNTAKLRHALKSEMVGMYS 68
Query: 988 EMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
E + LLD + + +PE+G FDL E++ S Y F
Sbjct: 69 EGNALQKLLDEHEDRWRVDTGIEVPEQGSFDLNEIMDSDYCF 110
>gi|452849733|ref|YP_007475378.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|452849745|ref|YP_007475390.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067451|gb|AGE14592.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067463|gb|AGE14604.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
Length = 266
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 37/260 (14%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLP-------SYVMRTHGAKQQRDTVKRTPKKQLEPVFEAL 511
+PM+ P + G++ + P Y H + + + + P+ Q E + + +
Sbjct: 31 LPMVCEP-RSPGFEHNKFIYGPYVTDDANQYCDPFHSILRSKHDLMKMPEGQ-EILSDCV 88
Query: 512 DTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE--KPETEDEAQLRKWQWKV 569
+ L K ++ VL L W G R+D E KP D
Sbjct: 89 NYLNRQKLVIHEEVLDFLISEWESG--------RSDTLFKEYIKPMPSDNG--------- 131
Query: 570 RNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLC 629
N ++ H + I LS+A + FY P DFRGR Y L++ G DL
Sbjct: 132 -NDAIKHNAIHYRYQSI---LSLASNFRKLPYFYLPVFGDFRGRLYTFCSLLSYQGQDLS 187
Query: 630 RGILEF-AEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFD--SADK 686
RG++ F E + GL ++ ++AN + G DKLSH+ +++F+E+ + + D DK
Sbjct: 188 RGLIGFYNESEEINSEGLCYVYHYMANTF--GNDKLSHDNKVSFSESIIKECLDLYENDK 245
Query: 687 PLEGRRWWLKAEDPFQCLAV 706
W KA +P L++
Sbjct: 246 EKWKNLWLNKAAEPVLFLSL 265
>gi|283047|pir||S22768 130K protein - maize mitochondrial plasmid-like DNA S-2
Length = 1159
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 100/509 (19%), Positives = 194/509 (38%), Gaps = 62/509 (12%)
Query: 505 EPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK 564
+PV A+ L +R+N V + + WS + L +N K + L
Sbjct: 488 QPVLSAVKKLQRQPYRINKLVYDFIQKHWSVLVSVGLLRPKNLALFKRKEALRLLSSLLF 547
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF-----YYPHNVDFRGRAYPMHP 619
++ + + + + +I MK E + Y+P +DFRGR Y P
Sbjct: 548 KHEELSTIYRYSELKSVLLKNIHASTFELYTMKIAEAYLDYKIYFPIFLDFRGRNYRHGP 607
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN--LYAGGVDKLSHEGRLAFTENHL 677
+ H DL R ++ F E S H + + + L+ + H+ + L
Sbjct: 608 FHFH-ERDLVRSLIIFDES---DDSAAHTINSDVGDRILHNFLISAAYHKSKFGVYREAL 663
Query: 678 DDIFDSADKPLEGRRWW--------LKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
+ I++ + ++ L PFQ ++ CI+L + + + + + PV
Sbjct: 664 EFIYNKIEDMQSKPTFFEKDIFVDTLCCRHPFQYISSCISL-KTYADTKDLSVLRYTPVF 722
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA-----DVYS---GIAARVLVIIQRDAQ 781
QD S + Q + D NL+ + D+Y G + L+ ++
Sbjct: 723 QDASASAYQIMSYFLLDIDYGIHTNLLKKTNTDGRYIRDIYEFMRGCLIKYLIAEEKIEL 782
Query: 782 RDPAVFPDALRAKLLLSQV----DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPME 837
+ P+ + +L+++ DR +VK+ M +YG T + ++ LK + + E
Sbjct: 783 AIKLLTPNEKDQESVLAKIVSIFDRNVVKKMFMPMMYGKTDYTLKKDVEDLLKGK-SDSE 841
Query: 838 EAELFGASCYAA-KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQ 896
L KV + ++ + SW G A +++PV ++TP + +Q
Sbjct: 842 GINLISKHISTYWKVNFGKMKDLMDLINYV-SWFG------AGQDKPVVYSTPYWV-TLQ 893
Query: 897 PYRKLGRHTVKTSLQILTLQRETEKVM--------------VKRQRTAFPPNFVHSLDGS 942
Y++ R VK +Q T + ++V +++ T+ NF+H D
Sbjct: 894 TYKR--RKRVKMKIQYETTKNNEKEVKTTSAKMLIPLNDNDIRKSSTSTFANFIHQKDAF 951
Query: 943 HMMMTAVACRK----AGLTFAGVHDSYWT 967
+ K + + VHD++ T
Sbjct: 952 TAIQLVDFINKLENASSIPIYAVHDNFIT 980
>gi|4206729|gb|AAD11787.1| RNA polymerase [Agaricus crocodilinus]
Length = 246
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 53/261 (20%)
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
K +PFQ ++ I + L S+P+ IS+ P+ D SC+G+QH AAL + A+ VNL
Sbjct: 6 KISEPFQFIS--IMYAKLLSMSNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNL 62
Query: 756 VA-REKPADVYSGIAARVLVIIQRDAQRDPAVFP-DALRAKLLLS--------QVDRKLV 805
KP D Y +D ++ +RAKL+ S Q++RK++
Sbjct: 63 YTDSSKPKDEYP---------------QDFYMYALGKIRAKLIQSEISELRDIQLNRKII 107
Query: 806 KQTVMTSVYGVTYIGARDQ------IKRRLKER------GAPMEEAEL------FGASCY 847
K++VMT Y ++ G + +K LK R A + ++ +G C
Sbjct: 108 KRSVMTIPYNISMSGIGEHLMEHFVVKTVLKYRYVVIPGSATISSKDVYLDFSKYGQLC- 166
Query: 848 AAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVK 907
K+ L + + R + ++ I N P+ W TP GL + K VK
Sbjct: 167 --KIIYFVLTKELPSLRILSNYFENMIDIFVKLNIPITWVTPSGLKIKYTNIKFKTQKVK 224
Query: 908 TSL----QILTLQRETEKVMV 924
TS+ +I T++ T+ + V
Sbjct: 225 TSVLNTSKITTIKLPTDSLDV 245
>gi|413947445|gb|AFW80094.1| hypothetical protein ZEAMMB73_281983 [Zea mays]
Length = 277
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 388 VIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGL 447
V+ L + PADQ D+ P P F H L E KK+ VI+ LV +G
Sbjct: 170 VLALAAGYTTTKPPADQTPDSSP---PTFKHVLCKPIIENGRLKKKHWVIDH--LVHEGF 224
Query: 448 ERTARHMVIPYMPMLVPPVKWTGYDKG 474
E TARH+ IPY+PMLVPP KW G G
Sbjct: 225 ESTARHVDIPYLPMLVPPKKWKGVLHG 251
>gi|141410|sp|P10581.1|RPOP_MAIZE RecName: Full=Probable DNA-directed RNA polymerase; AltName:
Full=S-2 DNA ORF1
Length = 1098
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 102/510 (20%), Positives = 195/510 (38%), Gaps = 64/510 (12%)
Query: 505 EPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK 564
+PV A+ L +R+N V + + WS + L +N K + L
Sbjct: 427 QPVLSAVKKLQWQPYRINKLVYDFIQKHWSVLVSVGLLRPKNLALFKRKEALRLLSSLLF 486
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF-----YYPHNVDFRGRAYPMHP 619
++ + + + + +I MK E + Y+P +DFRGR Y P
Sbjct: 487 KHEELSTIYRYSELKSVLLKNIHASTFELYTMKIAEAYLDYKIYFPIFLDFRGRNYRHGP 546
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN--LYAGGVDKLSHEGRLAFTENHL 677
+ H DL R ++ F E S H + + + L+ + H+ + L
Sbjct: 547 FHFH-ERDLVRSLIIFDES---DDSAAHTINSDVGDRILHNFLISAAYHKSKFGVYREAL 602
Query: 678 DDIFDSADKPLEGRRWW--------LKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
+ I++ + ++ L PFQ ++ CI+L + + + + + PV
Sbjct: 603 EFIYNKIEDMQSKPTFFEKDIFVDTLCCRHPFQYISSCISL-KTYADTKDLSVLRYTPVF 661
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA-----DVYS---GIAARVLVIIQRDAQ 781
QD S + Q + D NL+ + D+Y G + L+ ++
Sbjct: 662 QDASASAYQIMSYFLLDIDYGIHTNLLKKTNTDGRYIRDIYEFMWGCLIKYLIAEEKIEL 721
Query: 782 RDPAVFPDALRAKLLLSQV----DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPME 837
+ P+ + +L+++ DR +VK+ M +YG T + ++ LK + + E
Sbjct: 722 AIKLLTPNEKDQESVLAKIVSIFDRNVVKKMFMPMMYGKTDYTLKKDVEDLLKGK-SDSE 780
Query: 838 EAELFG--ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
L S Y KV + ++ + SW G A +++PV ++TP + +
Sbjct: 781 GINLISKHISTY-WKVNFGKMKDLMDLINYV-SWFG------AGQDKPVVYSTPYWV-TL 831
Query: 896 QPYRKLGRHTVKTSLQILTLQRETEKVM--------------VKRQRTAFPPNFVHSLDG 941
Q Y+ R VK +Q T + ++V +++ T+ NF+H D
Sbjct: 832 QTYK--WRKRVKMKIQYETTKNNEKEVKTTSAKMLIPLNDNDIRKSSTSTFANFIHQKDA 889
Query: 942 SHMMMTAVACRK----AGLTFAGVHDSYWT 967
+ K + + VHD++ T
Sbjct: 890 FTAIQLVDFINKLENASSIPIYAVHDNFIT 919
>gi|54606768|dbj|BAD66791.1| orf598 [Beta vulgaris subsp. vulgaris]
Length = 598
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 108/444 (24%), Positives = 157/444 (35%), Gaps = 76/444 (17%)
Query: 582 QRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTL 641
QR E L D FY P +DFRGR Y GIL F E R L
Sbjct: 151 QRARYEQTLIEMASAYDGYTFYLPAFLDFRGRIYR-------------SGILHFHE-RDL 196
Query: 642 GKSGL-----------------HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSA 684
+S + H+++ S E L L D+
Sbjct: 197 ARSLILIEDISIYEDYNPEFFDHYVRAFKTAAAYHYRSFTSDEAALCRISQLLHDL--KG 254
Query: 685 DKPLEGRRWWL-----KAEDPFQCLAVCINLTEA--LRSSSPETF--ISHIPVHQDGSCN 735
PL L A+ PFQ LA + E ++ SP T I P+ QD S +
Sbjct: 255 TDPLLSSEGTLIDFAKGAKHPFQFLANLRAIVEVDKVQKKSPFTLDQILSSPITQDASAS 314
Query: 736 GLQHYAALGRDTLGAAAVNLV---AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALR 792
Q + D A NL+ ++ DVY+ I + I R+ VF D
Sbjct: 315 AYQILSYFLLDDTLAKRTNLIPMDGDDRIQDVYNHIEIELKSFIAREGSVPEEVFKD--- 371
Query: 793 AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVT 852
+ R LVK M +YG + + D ++ L+ + + E F + K
Sbjct: 372 -------ITRSLVKSIFMPIIYGKSQMSTADDLRGHLR---SITTKKECFHIASLCFKFW 421
Query: 853 LTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL-----GLPVVQPYR-----KLG 902
M GI+ LG A AS +PV ++T V++PY KL
Sbjct: 422 KEKFAHM-DHLIGIIRLLGWFA---ASCGRPVLYSTKFFNTSQDYMVMEPYSLWVYDKLK 477
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
+ K +L + + + K K + + F NF+H D M RK G VH
Sbjct: 478 KRKRKVTLSVSSQDKRDRK---KTEISTFV-NFIHQKDAFIAMSVIEDMRKDGYPIYTVH 533
Query: 963 DSYWTHACDVDEMNRILREKFVEL 986
D+ ++ I R+ F +L
Sbjct: 534 DNLICTITKSQDLPGIYRKVFHDL 557
>gi|4206723|gb|AAD11785.1| RNA polymerase [Agaricus bitorquis]
Length = 246
Score = 59.3 bits (142), Expect = 1e-05, Method: Composition-based stats.
Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 45/257 (17%)
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
K +PFQ ++ I + L S+P+ IS+ P+ D SC+G+QH AAL + A+ VNL
Sbjct: 6 KISEPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNL 62
Query: 756 VA------REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTV 809
+ P D Y+ ++ RD + + + + +++RK++K++V
Sbjct: 63 YTDSSNPKEDYPQDFYTYALEKI---------RDKLINSEITELRDI--KLNRKIIKRSV 111
Query: 810 MTSVYGVTYIGARDQ------IKRRLKER------GAPMEEAEL------FGASCYAAKV 851
MT Y ++ G + +K LK R A + ++ +G C K+
Sbjct: 112 MTIPYNISMAGIGEHLMEHFTVKTVLKYRYVVIPGSATISSKDVYLDYSKYGQLC---KI 168
Query: 852 TLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL- 910
L + + R + ++ I N P+ W TP GL + K VKTS+
Sbjct: 169 IYFVLTKELPSLRLLSNYFESMIDIFVKLNIPITWVTPSGLKIKYTNIKFKPQKVKTSVL 228
Query: 911 ---QILTLQRETEKVMV 924
+I T++ T+ + V
Sbjct: 229 NTSKITTIKLPTDSLDV 245
>gi|4206725|gb|AAD11786.1| RNA polymerase [Agaricus subrutilescens]
Length = 246
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 45/257 (17%)
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
K +PFQ ++ I + L S+P+ IS+ P+ D SC+G+QH AAL + A+ VN+
Sbjct: 6 KISEPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNV 62
Query: 756 VA------REKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTV 809
+ P D Y+ ++ RD + + + + Q++RK++K++V
Sbjct: 63 YTDSSNPKEDYPQDFYTYALEKI---------RDKLINSEITELRDI--QLNRKIIKRSV 111
Query: 810 MTSVYGVTYIGARDQ------IKRRLKER------GAPMEEAEL------FGASCYAAKV 851
MT Y ++ G + +K LK R A + ++ +G C K+
Sbjct: 112 MTIPYNISMAGIGEHLMEHFTVKTVLKYRYVVIPGSATISSKDVYLDYSKYGQLC---KI 168
Query: 852 TLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSL- 910
L + + R + ++ I N P+ W TP GL + K VK S+
Sbjct: 169 IYFVLTKELPSLRLLSNYFESMIDIFVKLNIPITWVTPSGLKIKYTNIKFKPQKVKASVL 228
Query: 911 ---QILTLQRETEKVMV 924
+I T++ T+ + V
Sbjct: 229 NTSKITTIKLPTDSLDV 245
>gi|161617916|ref|YP_001595396.1| RNA polymerase [Enterobacteria phage phiEcoM-GJ1]
gi|150416335|gb|ABR68713.1| RNA polymerase [Enterobacteria phage phiEcoM-GJ1]
Length = 648
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 148/388 (38%), Gaps = 65/388 (16%)
Query: 661 VDKLSHEGRLAFTEN----HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRS 716
V K + +G N L+DI + +R A++P LA +N+ ++ R
Sbjct: 251 VSKFNDDGSTTLAYNMFMLELEDI--AGGDWTSAKRLTYVAQNPVGSLARMMNMDKSERP 308
Query: 717 SSPETFI----------------SHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVARE- 759
S P T++ S + D C+G Q+ A + + A A LV E
Sbjct: 309 SKPFTYVRLALDWFKFETTGECDSRVGFGLDAKCSGTQYLAFIAGNMEMARATGLVDSET 368
Query: 760 KPADVYSGIAARVLVIIQRDAQR-DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG--- 815
K +D Y +L ++ R + + P + + L K RK +K M YG
Sbjct: 369 KASDPYQLSLRELLKLLDRSSMKPSPEIMDEFLNPK-----AGRKFIKTPYMAIQYGGGK 423
Query: 816 VTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGE---MF--QAARGIMSWL 870
G+ D I + PME+AE F C A ALGE MF +AA +
Sbjct: 424 AALTGSSDFISYMTEALQIPMEKAEAFAELCVEA--IHNALGEKINMFIEKAADAAYTRC 481
Query: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQ--- 927
E K + + + G V++P S++I + R VM++ +
Sbjct: 482 VELGK------EYITYKHTDGQVVMKPCFPSRDICDAFSIRIDSATRVIFGVMLEGEEKP 535
Query: 928 -------------RTAFPPNFVHSLDGSHMMMTAVACRKAGL-TFAGVHDSYWTHACDVD 973
+ F N++ +D A+ ++AGL F +HD + D
Sbjct: 536 WTIRESNPTKEEFKRTFVVNYIQGIDALVARTVAIKAKEAGLRGFTSIHDCFRCCLADAP 595
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQK 1001
M ++R ++E++ + N +S K
Sbjct: 596 LMMEVIRSAYIEIF---VNNNQFESLSK 620
>gi|377806997|ref|YP_005090412.1| orf2 gene product (mitochondrion) [Boea hygrometrica]
gi|340549502|gb|AEK53323.1| hypothetical protein (mitochondrion) [Boea hygrometrica]
Length = 585
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 152/387 (39%), Gaps = 32/387 (8%)
Query: 598 DEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFA-EGRTLGKSGLHWLKIHLAN- 655
D FY P +DFRGR Y L+ DL R ++ FA + + + I +A
Sbjct: 93 DGYQFYLPAFLDFRGRIYR-SGILHFHERDLARSMIMFADQSDNNFNYNIAYYNICIATS 151
Query: 656 -LYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
LY + S + + + N +DDI + + + +A+ FQ LA + L +
Sbjct: 152 FLYKSSI---SEKEAINWFLNIMDDINSNKNPDDYLFKKASEAKRSFQFLANMLILKDIK 208
Query: 715 RSSSPET---FISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV---AREKPADVYSGI 768
S + FI + P+ QD S + Q + D A NL+ + DVYS +
Sbjct: 209 SISEIQNYNLFILNTPLTQDASASAYQIMSYFLLDESMAMRTNLIPHPCHNEIQDVYSYM 268
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
+ I + Q D +K + + RK+ K M +YG T + +KR
Sbjct: 269 LEELKEFINSELQ-------DNNLSKTINGILTRKIAKGIFMPMIYGKTLMSTACDLKRD 321
Query: 829 LKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ----PV 884
L E EL K + + + + R I W+ + I + N V
Sbjct: 322 LSSFITNKECFELASICFKFWKTKYSHMECLIRLIRHI-GWIVSASDRIVNYNAKNLITV 380
Query: 885 RWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHM 944
+ T + + Y K+ + + +L++ + +++T K T+ NF+H D +
Sbjct: 381 QNYTKIEPINIWIYDKMNKKRRRVTLRVSSDKKDTRKT-----ETSTFVNFIHQKDANIA 435
Query: 945 MMTAVACRK--AGLTFAGVHDSYWTHA 969
M + K VHD++ T A
Sbjct: 436 MNVVESLMKNYNDCPIYTVHDNFITTA 462
>gi|89148160|gb|ABD62823.1| mitochondrial single-subunit RNA polymerase [Naegleria gruberi]
Length = 66
Score = 56.2 bits (134), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 741 AALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQV 800
AALGRD LGA VNL+ KP DVY G+ V I+RD + + AKLL V
Sbjct: 1 AALGRDNLGALHVNLLPTSKPMDVYVGVLEVVKKHIERDMKAGNKL------AKLLHGNV 54
Query: 801 DRKLVKQTVMTS 812
R +KQTVMTS
Sbjct: 55 YRSTIKQTVMTS 66
>gi|242092660|ref|XP_002436820.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
gi|241915043|gb|EER88187.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
Length = 115
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 187 GKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA 246
++R L++RQVK ETEAWE+ EYRE+ + +++LA L KSLF+GWFE L + I
Sbjct: 11 AQHRRLRLRQVKAETEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETIT 70
Query: 247 KEQERCRMAKHKVAYAPYFDQLPA 270
++ R + K Y Q+PA
Sbjct: 71 CDRHVQRWKRVKHVYG--LRQVPA 92
>gi|10092337|gb|AAG12747.1|AC066690_1 mitochondrial single-subunit DNA-dependent RNA polymerase,
putative; 6999-7354 [Arabidopsis thaliana]
Length = 75
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 830 KERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIAS 879
KE +++ F ASCY AK+TL AL MF+AAR I SW G CA+ I S
Sbjct: 12 KEHDTFEDDSLTFHASCYVAKITLKALEGMFEAARAIKSWFGNCARAIKS 61
>gi|224365624|ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
gi|209954148|emb|CAQ77581.1| DNA-dependent RNA polymerase. This is a family of single chain RNA
polymerases; pfam00940 [Vitis vinifera]
gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase [Vitis vinifera]
Length = 975
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 93/410 (22%), Positives = 162/410 (39%), Gaps = 77/410 (18%)
Query: 600 EGF--YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY 657
EG+ Y P VDFRGR Y L+ DL R ++ F G+ H +
Sbjct: 480 EGYKIYLPAFVDFRGRIYRA-GVLHFHERDLARSLVLFTCNNPSGELINHNIDDKEIMFI 538
Query: 658 AGGVDKLSHEGRLAFTENH---LDDIFDSADKPLEGRRWWLKAEDPFQCLA--VCINLTE 712
A ++ ++ +++ LD + A L A DP+Q ++ +CI
Sbjct: 539 ASAAAAFHYKKFESYKDSYQWYLDHVSMKASSAESIIELALSAADPYQFISKVLCI---- 594
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVA--------------R 758
S+ ++ + IP+ QD S + Q + D A NL+
Sbjct: 595 ---ESNNKSNLIQIPITQDASASAYQIMSYFLLDNDLALKTNLIPYIDYHYSPEYDFSDN 651
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
+K D+Y+ + + V +++ + A ++ ++ RKLVK M +YG T
Sbjct: 652 KKIKDIYTILLEELKVYFRKELTNN--------LADIVCPRLTRKLVKVLFMPMIYGKTV 703
Query: 819 IGARDQIKRR---LKERGAPMEEAE---LFGASCYAAKVTLTALGEMFQAARGIMSWLGE 872
I + + L ++G M+ A+ +F + Y V L L R I SWL
Sbjct: 704 ISIANDFNQHFDSLLDKGECMQLAKKIYIFYKTYYPGIVNLMDL------IRNI-SWL-- 754
Query: 873 CAKIIASENQPVRWTTPLGLPV----------VQPYRKLGRHTVKTSLQILTLQRETEKV 922
+++ ++PV ++ L V + Y ++ R + +L+I + R+ K
Sbjct: 755 ----VSAMDRPVLYSVSLFTTVQDYMKSKTVNIWVYDRIHRKRRQVTLRIPSGDRDRRKT 810
Query: 923 MVKRQRTAFPPNFVHSLD---GSHMMMTAVACRKAGLTFAGVHDSYWTHA 969
+ F NF+H D HM+ V+ T VHD++ T A
Sbjct: 811 ----HMSTF-ANFIHQKDAFIAMHMIKYMVSENAPVYT---VHDNFITTA 852
>gi|167588939|ref|ZP_02381327.1| DNA-dependent RNA polymerase [Burkholderia ubonensis Bu]
Length = 246
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 667 EGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHI 726
E R A+T + I P R W +KA+ P+Q LA C A E F S +
Sbjct: 11 EEREAWTRQNEAMILRVVADPRSNREW-MKADKPWQFLAACFEW--AGYQEEGEAFRSRL 67
Query: 727 PVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
DGSC+G+Q A + RD A VN V+ E+ D Y +A
Sbjct: 68 AGALDGSCSGVQMLAGMTRDASAGAMVNFVSSERGDDYYGRMA 110
>gi|238566639|ref|XP_002386099.1| hypothetical protein MPER_15811 [Moniliophthora perniciosa FA553]
gi|215437037|gb|EEB87029.1| hypothetical protein MPER_15811 [Moniliophthora perniciosa FA553]
Length = 49
Score = 53.9 bits (128), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPL 688
+ LG GL WLKIHLANLY G DK S R+ + + L+ IFDSA PL
Sbjct: 1 KPLGARGLRWLKIHLANLY--GYDKASFSERVEYIDARLEQIFDSATNPL 48
>gi|94502567|ref|YP_588388.1| hypothetical protein ZeamMp138 [Zea mays subsp. mays]
gi|40795006|gb|AAR91050.1| hypothetical protein (mitochondrion) [Zea mays]
gi|414871177|tpg|DAA49734.1| TPA: DNA-directed RNA polymerase [Zea mays]
Length = 417
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 87/405 (21%), Positives = 166/405 (40%), Gaps = 45/405 (11%)
Query: 510 ALDTLGNTKWRVNNRVLSVLDR---IWSCGGRLA----DLVDRNDVPLPEKPETEDEAQL 562
++ L + +++N ++L L + I+ G L +DR + + K ++ ++
Sbjct: 13 VINKLQSVPYQINTKLLCHLVKCKDIYHASGLLMPSILASIDRTEGTVRLKHHYLNDKEM 72
Query: 563 RKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLN 622
+K+ + ++++ + C + L +A +++ Y+P +DFRGR Y P+
Sbjct: 73 KKY-FSLKDLINIWIKNIQSACYEQYILKLADALQNY-NLYFPTFLDFRGRNYRYGPFHY 130
Query: 623 HLGSDLCRGILEFAEGRTL------GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN- 675
H DL R ++ FA+ G G+ A Y+ K +EG + F +N
Sbjct: 131 H-ERDLVRSLILFAQSGVTDTPPDKGSQGIRTFMASTAFHYSKYW-KNYNEGIIWFIKNI 188
Query: 676 -HLDDIFDSADKPLEGRRWWL--KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDG 732
D+ + + R L KA PFQ L+ I L R S I+ P+H D
Sbjct: 189 HECPDLNSNKADIVLDRLANLARKARHPFQFLSSVITLKN--RDSDK---IARTPIHLDA 243
Query: 733 SCNGLQHYAALGRDTLGAAAVNLVA-REKPADVYSGIAARVLVIIQRDAQRDPAVFPDAL 791
S + Q + L + A NL++ K ++Y I + I+R + + +
Sbjct: 244 SASAYQMLSYLLGNITMARNTNLISENNKINNIYEIIDSDFKKYIERK-------YGEHI 296
Query: 792 RAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPM--EEAELFGASCYAA 849
+ + S DR ++K M VYG + + L + G+ M E+ + CY
Sbjct: 297 ITRYVCSLFDRDIIKNIFMPIVYGKSKFSTAIDL---LGKIGSYMVVEDLKTIIKECY-- 351
Query: 850 KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
++ R +M + + + N+PV ++T + V
Sbjct: 352 ----NFWESEYKDMRNLMHLVASISWVSGFINKPVIYSTEYWITV 392
>gi|361129190|gb|EHL01103.1| putative DNA-directed RNA polymerase, mitochondrial [Glarea
lozoyensis 74030]
Length = 484
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 24/156 (15%)
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPADQ--LADAPPDIFPAFTHALRTVSKETKGGSK 432
PW RAKVG+ V+ L A + P + ++ PA H+ + K G +
Sbjct: 344 PWPTAVRAKVGAYVLSALIDIATMPVPIQNSVTKETMTEMQPALLHSYKY-----KHG-R 397
Query: 433 KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-HGAKQ 491
KYG+I N + + L+ + P W + +G + P+ ++R G K
Sbjct: 398 KYGIIMANEALTQSLK--------------LEPDPWMSFAEGGYLIHPTKLIRVKSGNKD 443
Query: 492 QRDTVKRT-PKKQLEPVFEALDTLGNTKWRVNNRVL 526
QR + + L+ + E LD LG T+WR+N V
Sbjct: 444 QRYYAEAAIAQGDLDRLREGLDVLGKTEWRINRPVF 479
>gi|15147299|ref|NP_150303.1| orf181 [Spizellomyces punctatus]
gi|15100068|gb|AAK84232.1|AF404303_6 orf181 [Spizellomyces punctatus]
Length = 181
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK---------PADVYSGIAARVL 773
I H+P + D +C+G QH + + RD + A VN++ E P D YS I +
Sbjct: 6 IVHLPCYVDATCSGTQHISVIMRDAVLAKMVNVIECEDDAPYHGDRIPKDFYSSIIPFIN 65
Query: 774 VIIQR-DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
IQ DA P + R LVK+ VMT Y V+ G DQ L E+
Sbjct: 66 EAIQALDADHPLRYLP-----------ITRALVKRPVMTIPYNVSLKGIADQ----LMEQ 110
Query: 833 GAPMEEAELFGA 844
G ++ +L G
Sbjct: 111 GVEAKDKDLKGV 122
>gi|42411057|gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota]
Length = 999
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/414 (22%), Positives = 156/414 (37%), Gaps = 75/414 (18%)
Query: 588 LKLSVARKMKDEEG--FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
LKL++A EG FY P +DFRGR Y L+ DL R ++ FA+ + S
Sbjct: 497 LKLAIAY-----EGYHFYLPAFLDFRGRIY-RSGILHFHERDLARSLVIFAKEDSQVSSS 550
Query: 646 L----HWLKIHLANLYAGGVDKLS--HEGRLAFTENHLDDIFDSADKPLEGRRWWLKAED 699
+ + HL + D + E + F E D + ++ A+
Sbjct: 551 IPISFYCAASHLYRSFDNNDDAVEWFEEAKGTFEEAPNDLLI----------KFACDAKK 600
Query: 700 PFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR- 758
P Q L+ C+ + + ++ I+ P+ QD S + Q + D A NL+ R
Sbjct: 601 PLQFLS-CVVVFKEYSTTQDLQAITSYPITQDASASAYQLMSYFLLDKDLAKNTNLIQRP 659
Query: 759 --EKPADVYSGIAARVLVIIQ-RDAQRDPAVFPDALRAKLLLSQVD---RKLVKQTVMTS 812
D+YS + V V I D ++ + L+L+ D RK+VK M
Sbjct: 660 GDSNIQDIYSYLLKEVQVYINDNDKYKNDS---------LILTVSDNLTRKIVKGIFMPM 710
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFGA---SCYAAKVTLTALGEMFQAARGIMSW 869
+YG T L G ++E+ F A+V + +M+
Sbjct: 711 IYGKT-----------LMSTGIFLQESFSFDLGKRQNAVAQVFYDFFKVKYSRLNCLMNM 759
Query: 870 LGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTV-----------KTSLQILTLQRE 918
+ + PV + PL +Q YRK + K +L I + +R+
Sbjct: 760 IQNIGWFSSERGNPVCYKVPL-FTTIQDYRKSSETHIWVYSKSTHSRKKVTLSIPSEERD 818
Query: 919 TEKVMVKRQRTAFPPNFVHSLDGSHMMMTA---VACRKAGLTFAGVHDSYWTHA 969
+ K + ++ NF+H D M ++ + VHD++ T A
Sbjct: 819 SRKTL-----SSTFVNFIHQKDACLAMNVVKFLLSDPSIPIPIYTVHDNFITIA 867
>gi|291335378|gb|ADD94992.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C24]
Length = 141
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 904 HTVKTSLQILTLQR------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
TV+ LQ++ + +++KV + + A PN +HSLD S + +A+ +
Sbjct: 17 QTVQVELQLMGRCKLTVAVDDSDKVDKQHHKNATAPNLIHSLDSSLLHFSAL---RFDAP 73
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDF 1017
A +HDS A D+ ++ I+RE ++ L+ + L F PP+ GD
Sbjct: 74 IALIHDSVLCRATDMSSLSAIVRETYMHLFAE---HDYLRDFADQIEAETDPPII--GDL 128
Query: 1018 DLREVLGSPYFF 1029
V+ S YFF
Sbjct: 129 QPESVIESTYFF 140
>gi|372450210|ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
Length = 875
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 109/503 (21%), Positives = 198/503 (39%), Gaps = 65/503 (12%)
Query: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWK-V 569
L++L + + +NN+VL + + + L L+ RN + K E D + + K V
Sbjct: 268 LNSLQSQVFEINNKVLEFILQNRNRLVELGLLMPRNLAYVNLK-EASDLLRFSYFSDKGV 326
Query: 570 RN-----------VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMH 618
+N VK+ R R+ + ++L+ A D F P +DFRGR Y
Sbjct: 327 QNACSCHVLIKELVKRVQRARYEE---FVIRLASAY---DGYQFDLPAFMDFRGRIY-RS 379
Query: 619 PYLNHLGSDLCRGILEFA-EGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHL 677
L+ DL R ++ FA + + L + LA A K + N
Sbjct: 380 GVLHFHERDLSRSLIVFAGQPKALNSQLAKTISQDLACAAAFKYKKFFNLDDAFKWYNEH 439
Query: 678 DDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGL 737
+ ++D+ L ++ ++A DPFQ LA + S + +PV QD S +
Sbjct: 440 QSLMLASDESL--MKFAVQASDPFQFLA-------KILSKDIVSNYHKVPVTQDASASAY 490
Query: 738 QHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLL 797
Q + L + NL+ G V + +Q + ++ DA + ++L
Sbjct: 491 QIMSYLLLNQEMGRRTNLLPSS------DGQIQDVYMCLQEELKKFLVTRLDANKYAVIL 544
Query: 798 SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALG 857
S + RKLVK M +YG T K + G+ + + +G + +
Sbjct: 545 SMLTRKLVKGLFMPLIYGKT---VSSMAKDIMDHYGSLLSHKDSYGLAVLCYEFLSLKYP 601
Query: 858 EMFQAAR--GIMSWLGECAKIIASENQPVRWTTPLGLPV----------VQPYRKLGRHT 905
++ ++ W C+K+ ++PV ++ P V + Y ++ +
Sbjct: 602 DIVNLLNLINLIGWF--CSKL----DKPVFYSIPYITTVQDYMRSKATDIWLYDRVSKKR 655
Query: 906 VKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV--ACRKAGLTFAGVHD 963
+ +L++ T R++ K + A NF+H D +++ M V G VHD
Sbjct: 656 RRVTLRVPTPDRDSRKT-----KVATCVNFIHQKD-AYIAMKVVEELLLIQGAPVYTVHD 709
Query: 964 SYWTHACDVDEMNRILREKFVEL 986
++ T A + I FV +
Sbjct: 710 NFITTALYARMVPEIYTGVFVNM 732
>gi|1869751|emb|CAA72281.1| RNA-polymerase [Hebeloma circinans]
Length = 209
Score = 49.7 bits (117), Expect = 0.009, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 883 PVRWTTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVMVKRQRTAFPPNFVHS 938
P W TP G+ V R++ VK SL + +++ TE + + + PNF+HS
Sbjct: 5 PFFWQTPAGMSVSMSTREMQSKKVKPSLIKKSKPISILIPTEVIDYPKIKLGLMPNFIHS 64
Query: 939 LDGSHMMMTAVACRK---AGLTFAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFEN 994
LD S++ + K L +HD + + ++ + +++ F+ELY ++ E
Sbjct: 65 LDASNIHLLISNINKYNLKDLNLYTIHDCFASDYKNIAIIELLVKHSFIELYFQVDYLEA 124
Query: 995 LLDSFQK 1001
+ +SF K
Sbjct: 125 IHESFIK 131
>gi|297738415|emb|CBI27616.3| unnamed protein product [Vitis vinifera]
Length = 30
Score = 49.7 bits (117), Expect = 0.009, Method: Composition-based stats.
Identities = 19/23 (82%), Positives = 22/23 (95%)
Query: 726 IPVHQDGSCNGLQHYAALGRDTL 748
+PVHQDGSCNGLQH+AALGRD +
Sbjct: 1 MPVHQDGSCNGLQHHAALGRDKV 23
>gi|116073358|ref|ZP_01470620.1| DNA-directed RNA polymerase [Synechococcus sp. RS9916]
gi|116068663|gb|EAU74415.1| DNA-directed RNA polymerase [Synechococcus sp. RS9916]
Length = 193
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 20/186 (10%)
Query: 561 QLRKWQWKVRNVKKENRERHSQRCDIELK-LSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
+LR W ENRE + L+ L +A + + + P D R R M
Sbjct: 17 KLRAWH--------ENREVADRERVTPLRVLMMAARFRPIDHCDLPTYFDSRLRMSYMCD 68
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLK----IHLANLYA-----GGVDKLSHEGRL 670
LN GSD + +L FA + + + ++ I LAN A DK S EGR+
Sbjct: 69 TLNPQGSDYQKALLHFANSVQVTEENIREVQKDLLITLANAAAIETPAVKTDKPSMEGRM 128
Query: 671 AFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQ 730
A+ + + D A+ P R++W + ++PFQ LA E + ++ +P +
Sbjct: 129 AWELEMVTKLKDEAEYPAVNRKFWTECDEPFQFLAALREYYEIFVWCC--STVARVPNGR 186
Query: 731 DGSCNG 736
D + +G
Sbjct: 187 DATNSG 192
>gi|416251162|ref|ZP_11637570.1| hypothetical protein E9W_06926 [Moraxella catarrhalis CO72]
gi|326573163|gb|EGE23132.1| hypothetical protein E9W_06926 [Moraxella catarrhalis CO72]
Length = 402
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 69/264 (26%)
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTE---NHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
+ +L I +AN + G+DKL++E R+ + + N L+++ + A++P+ + KA
Sbjct: 7 MQYLAIDIANHF--GLDKLNYEERIDWVKTNINSLENMTEQAEEPI----LFAKA----- 55
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
ALR + H V D +C+GLQ + L G + L+ K +
Sbjct: 56 --------VHALRQTQQGIPTGH-TVAFDATCSGLQLMSLLTNCKSGMSLTGLIDPNKRS 106
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
D Y+ I + ++++D D++ +V RK KQ +MTS+YG
Sbjct: 107 DAYTQITEYINYLLKQDG-------IDSV-------EVSRKDAKQAIMTSLYG------- 145
Query: 823 DQIKRRLKERGAPMEEAELFGASC--YAAKVTLTALGEMFQAARGIMSWLGECAKIIASE 880
+ P ELFG Y K A+ E A ++SWL + I
Sbjct: 146 --------SKAKP---KELFGKQLLPYFYK----AMDECCTGAMDLLSWLLNSWQDI--- 187
Query: 881 NQPVRWTTPLG----LPVVQPYRK 900
Q W P G +P +Q K
Sbjct: 188 -QVQSWVLPDGHTAYIPTMQQVTK 210
>gi|313244254|emb|CBY15078.1| unnamed protein product [Oikopleura dioica]
Length = 808
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 21/201 (10%)
Query: 459 MPMLVPPVKWTGYD---KGAHFFLPSYVMRTHGAK-------QQRDTVKRTPKKQLEPVF 508
MPML PP + +D KG P +++ + ++ ++ PK+++ +
Sbjct: 601 MPMLCPPRPYKIFDNQIKGQFLTSPRLLVKKKKMRNPKPFHIEESPGWRQYPKEKINHML 660
Query: 509 EALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRND-------VPLPEKPETEDEAQ 561
A + + W +N ++ VL+ + GG + D + T D
Sbjct: 661 TACNAISQQSWSINKEIVKVLEEVTKEGGMYTLKIPMRDCWDISHGIKSIVTTSTSDPLY 720
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
R Q + R ++ E + + + L + + + F+ P ++D+RGR YP +
Sbjct: 721 NRHKQVETR-LRVEEKGLY---VTFQSHLGLVKYFSQFDEFWLPLDLDYRGRIYPTTAIM 776
Query: 622 NHLGSDLCRGILEFAEGRTLG 642
N L SD R F + + LG
Sbjct: 777 NPLSSDPYRASFLFGKAKKLG 797
>gi|416239277|ref|ZP_11631827.1| hypothetical protein E9Q_06158 [Moraxella catarrhalis BC1]
gi|326567465|gb|EGE17580.1| hypothetical protein E9Q_06158 [Moraxella catarrhalis BC1]
Length = 402
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 69/264 (26%)
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTE---NHLDDIFDSADKPLEGRRWWLKAEDPFQ 702
+ +L I +AN + G+DKL++E R+ + + N L+++ + A++P+ L A+ +
Sbjct: 7 MQYLAIDIANHF--GLDKLNYEERIDWVKTNINSLENMTEQAEEPI------LFAKAVY- 57
Query: 703 CLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA 762
ALR + H V D +C+GLQ + L G + L+ K +
Sbjct: 58 ----------ALRQTQQGIPTGH-TVAFDATCSGLQLMSLLTNCKSGMSLTGLIDPNKRS 106
Query: 763 DVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGAR 822
D Y+ I + ++++D D++ +V RK KQ +MTS+YG
Sbjct: 107 DAYTQITEYINYLLKQDG-------IDSV-------EVSRKDAKQAIMTSLYG------- 145
Query: 823 DQIKRRLKERGAPMEEAELFGASC--YAAKVTLTALGEMFQAARGIMSWLGECAKIIASE 880
+ P ELFG Y K A+ E A ++SWL + I
Sbjct: 146 --------SKAKP---KELFGKQLLPYFYK----AMDECCTGAMDLLSWLLNSWQDI--- 187
Query: 881 NQPVRWTTPLG----LPVVQPYRK 900
Q W P G +P +Q K
Sbjct: 188 -QVQSWVLPDGHTAYIPTMQQVTK 210
>gi|385198381|gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris]
Length = 371
Score = 46.6 bits (109), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 106/286 (37%), Gaps = 31/286 (10%)
Query: 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKP--ADVYSGIAARVLVIIQRDAQRD 783
IP+ QD S + Q A D A NL+ + D+Y L I ++
Sbjct: 8 IPITQDASASAYQIMAYFLLDETMAMKTNLIINKFDWIVDIYEMFKEECLEYIHKNES-- 65
Query: 784 PAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG 843
D + L RK+VK M +YG T + L G + + E F
Sbjct: 66 -----DKHFCQTLSRVFTRKIVKNIFMPIIYGKTVNSTGKDLHILL---GNDLLKPECFK 117
Query: 844 ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGR 903
AK+ + + + +G ++ AS +PV + T Q Y+K+
Sbjct: 118 L----AKLCYAFWHDTYNHMYSFIDLIGLVGRVCASLERPVLFNTKF-YDTHQDYKKVES 172
Query: 904 HTVKTSLQI------LTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLT 957
+V+ +I + L ++ ++ R A NF+H D M A +
Sbjct: 173 CSVRVFDKINRKNRTVNLSVPSDVRDKRKSRAATFVNFIHQRDAKIAMSVAEIAGSYQIP 232
Query: 958 FAGVHDSYWTHACDVDEMNRILREKFVELYEMP-------IFENLL 996
VHD++ ++ + ++ I F E+ E P I+ NL+
Sbjct: 233 LYTVHDNFISNTINSQKLPNIYCHVFREM-EAPMTIINRFIYNNLI 277
>gi|188032265|emb|CAQ52967.1| unnamed protein product [Lolium perenne]
Length = 1272
Score = 46.2 bits (108), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
+A+ PFQ LA C +A R+ T + HIP+ QD S + Q + D NL
Sbjct: 797 QAKSPFQFLAGC----QAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMGMHTNL 851
Query: 756 VAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
+ + D+Y + ++ ++ D ++ + DRK++K M +YG
Sbjct: 852 IGSNEINDIYDCLLHQLRYYSTTIPNQENV---DKHALNIINTVFDRKIMKNIYMPIIYG 908
Query: 816 VTYIGARDQIKRRL 829
T RD +++
Sbjct: 909 KTKKSTRDDFIKKI 922
>gi|188032261|emb|CAQ52964.1| unnamed protein product [Lolium perenne]
Length = 1284
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
+A+ PFQ LA C A R+ T + HIP+ QD S + Q + D NL
Sbjct: 809 QAKSPFQFLAGC----HAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMGMHTNL 863
Query: 756 VAREKPADVYSGIAARV-----LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
+ + D+Y + ++ + IQ + D ++ + DRK++K M
Sbjct: 864 IGSNEINDIYDCLLHQLRCYTTTIPIQENV--------DMHALNIINTVFDRKIMKNIYM 915
Query: 811 TSVYGVTYIGARDQIKRRL 829
+YG T RD +++
Sbjct: 916 PIIYGKTKNSTRDDFIKKI 934
>gi|188032269|emb|CAQ52970.1| unnamed protein product [Lolium perenne]
Length = 1272
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 696 KAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNL 755
+A+ PFQ LA C A R+ T + HIP+ QD S + Q + D NL
Sbjct: 797 QAKSPFQFLAGC----HAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMGMHTNL 851
Query: 756 VAREKPADVYSGIAARV-----LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
+ + D+Y + ++ + IQ + D ++ + DRK++K M
Sbjct: 852 IGSNEINDIYDCLLHQLRCYTTTIPIQANV--------DMHALNIINTVFDRKIMKNIYM 903
Query: 811 TSVYGVTYIGARDQIKRRL 829
+YG T RD +++
Sbjct: 904 PIIYGKTKKSTRDDFIKKI 922
>gi|452849734|ref|YP_007475379.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|452849744|ref|YP_007475389.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067452|gb|AGE14593.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067462|gb|AGE14603.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
Length = 152
Score = 44.3 bits (103), Expect = 0.34, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 804 LVKQTVMTSVYGVTYIGARDQIK---RRLKERGAPM----EEAELFGASCYAAKVTLTAL 856
++K+ ++T Y ++ IG ++Q++ RL E P E G + V L L
Sbjct: 1 MIKKPIITINYNISRIGVKEQLQDQFTRLFEDKIPYYKIPENRTKDGKVMSLSPVELWEL 60
Query: 857 GEM-------FQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS 909
+ A + ++++L I+ N+P+ W TP G+ + YR T +
Sbjct: 61 SSVVYTTFKNLPAYKDLINYLDSINNIMNELNRPLTWITPKGIKIYANYRTYESLTTQAK 120
Query: 910 L----QILTLQRETEKVMVKRQRTAFPPNFVH 937
+ +T+ T K+ ++ + AF PN +H
Sbjct: 121 FFEHSKPVTISIPTNKLNKRKNKIAFMPNLIH 152
>gi|105922710|gb|ABF81432.1| TIR-NBS-TIR-TIR-WRKY type disease resistance protein [Populus
trichocarpa]
Length = 1251
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Query: 428 KGGSKKYGVIECNPLVLKGLERT-ARHMVIPYM 459
+ G+KKYGVI+C+PLVLKGLE+T AR + P +
Sbjct: 13 RKGAKKYGVIQCDPLVLKGLEKTGARETIEPAL 45
>gi|402585201|gb|EJW79141.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 654
Score = 43.5 bits (101), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 454 MVIPYMPMLVPPVKWTGYDKGAHFFLPSY-VMRTH----GAKQQRDTVKRT-PKKQLEPV 507
++I + LVPP W +G ++ S+ V+R H + KR +KQ PV
Sbjct: 540 LLIYCLWKLVPPRPWLDSGEGGPYYGSSFNVLRPHPDYSMINVNYEMKKRLKSRKQARPV 599
Query: 508 FEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLAD--LVDRNDVPL 550
F+AL+ LG T W++N VL V +++ AD +++ +P+
Sbjct: 600 FDALNDLGITPWKINEPVLDVALKVFEMAQTNADEKFLEKLSIPI 644
>gi|300120042|emb|CBK19596.2| DNA-directed RNA polymerase [Blastocystis hominis]
Length = 276
Score = 41.2 bits (95), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 156 ELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELL 215
EL M +++Q+ + S ++ ++A + R L RQ+++E A + A +Y+ +
Sbjct: 62 ELTPIMDRDKQKHPD--STLSKEKMAEAVKVN--RDLLKRQLELEENAIDLAVQKYQAMK 117
Query: 216 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKH------KVAYAPYFDQLP 269
++ + +L + L WF+PL AI +EQ + + + A PY L
Sbjct: 118 AEVEKIGQGVSLRPAQILLADWFDPLSTAIREEQLNIKYSSQGKGAISEKAIQPYLLLLK 177
Query: 270 ADMMAVITMHKLMGLLM 286
+ +++I +H+L+ +LM
Sbjct: 178 PEKISIIVLHELVHILM 194
>gi|430377107|ref|ZP_19431240.1| hypothetical protein MOMA_06916 [Moraxella macacae 0408225]
gi|429540244|gb|ELA08273.1| hypothetical protein MOMA_06916 [Moraxella macacae 0408225]
Length = 399
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+ +L I +AN + G+DK +++ R+ + + +LDD+ DK AE+P
Sbjct: 7 MQYLAIDIANHF--GLDKQTYDQRIDWVKANLDDLESYQDK----------AEEPI---- 50
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
+ +ALR S H V D +GLQ + + R G L+ ++ +D Y
Sbjct: 51 LFAKSVKALRDSQLGIKTGH-TVALDSVNSGLQLMSVIMRCKRGCELTGLIDQDTRSDAY 109
Query: 766 SGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG 815
+ I R+ ++++D + V RK K MT YG
Sbjct: 110 TAITERMNALLKQDGIDEIT--------------VTRKQAKDACMTWAYG 145
>gi|403333886|gb|EJY66074.1| hypothetical protein OXYTRI_13761 [Oxytricha trifallax]
Length = 1098
Score = 40.0 bits (92), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 541 DLVDRNDVPLPEKP--ETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
+L+D N VPL P ++ E+Q R+ V E + + Q+ D+ + ++ K +D
Sbjct: 518 NLLDENAVPLTLSPRADSRSESQQRQQGHSVLVQLYEEEQLNKQKHDLAFQRTIMNKKQD 577
Query: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLG 625
++G+ H+VD R RAYP NH+
Sbjct: 578 KQGYNQQHSVDSR-RAYPNKE--NHMN 601
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,491,307,238
Number of Sequences: 23463169
Number of extensions: 717848622
Number of successful extensions: 2271804
Number of sequences better than 100.0: 821
Number of HSP's better than 100.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 2265373
Number of HSP's gapped (non-prelim): 1575
length of query: 1030
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 877
effective length of database: 8,769,330,510
effective search space: 7690702857270
effective search space used: 7690702857270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)