BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036741
(1030 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
Length = 1020
Score = 1578 bits (4085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 763/1036 (73%), Positives = 872/1036 (84%), Gaps = 22/1036 (2%)
Query: 1 MSNNKTPIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISLHL 60
MS+ KTPI + N +KPT +P S +MWRN+ KQ S
Sbjct: 1 MSSTKTPISLTIKL------------NQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTP 48
Query: 61 KKPF----SRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRT 116
+K +R YSFLG QDSI +D KF L + +G +GE L ++++ R
Sbjct: 49 QKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRP 108
Query: 117 SFGVLKNDNFWCPRGYATVAEAV--SSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSG 174
N+NF C + YA+VAEAV SSTD EEDVS+V+E+ ELL E+KKEE+++
Sbjct: 109 LIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFA-FRR 167
Query: 175 RNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLF 234
R +R + GMG KY+ LK RQVK+ETEAWE+AA EY+ELL DMCEQKLAPNLPY+KSLF
Sbjct: 168 RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLF 227
Query: 235 LGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA 294
LGWFEPLRD IA+EQE C K K AYA YF QLPADMMAVITMHKLMGLLMTGG+HG A
Sbjct: 228 LGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTA 287
Query: 295 RVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 354
RVVQAA +IGDAIEQEVRIH FLEKTKK+ K+K+ E+G+ VT EQEKLRKKVT+L
Sbjct: 288 RVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH---VTQEQEKLRKKVTNL 344
Query: 355 IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 414
+KKQKL AV +IV+ QDD KPWGQDARAKVGSR+I+LL QTAYIQ PA+QLA PPDI P
Sbjct: 345 MKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRP 404
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474
AF H++RTV+KETK S++YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKWTGYDKG
Sbjct: 405 AFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKG 464
Query: 475 AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534
H +LPSYVMRTHGA+QQR+ VKR + QL+PVFEALDTLGNTKWR+N RVLSV+DRIW+
Sbjct: 465 GHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWA 524
Query: 535 CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594
GGRLADLVDR+D PLPE+P+TEDEA KW+WKV++VKKENRERHSQRCDIELKL+VAR
Sbjct: 525 GGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVAR 584
Query: 595 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654
KMKDEE F+YPHNVDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGR LG+SGL WLKIHLA
Sbjct: 585 KMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLA 644
Query: 655 NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714
NL+AGGV+KLS EGR+ FTENH+DDIFDS+DKPLEGRRWWL AEDPFQCLAVCINL+EA+
Sbjct: 645 NLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAV 704
Query: 715 RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774
RSSSPET +SHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGIAARVL
Sbjct: 705 RSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLD 764
Query: 775 IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834
I++RDAQRDPA FPDA+RA++L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA
Sbjct: 765 IMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 824
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
+++ELFGA+CYAAKVTLTALGEMF+AAR IM+WLGECAKIIASEN+PVRWTTPLGLPV
Sbjct: 825 IADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPV 884
Query: 895 VQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954
VQPYRK+GRH +KTSLQILTLQRETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVACR+A
Sbjct: 885 VQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRA 944
Query: 955 GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPER 1014
GL FAGVHDSYWTHACDVD++NRILREKFVELYE PI E LL+SFQ S+P L+FPPLPER
Sbjct: 945 GLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPER 1004
Query: 1015 GDFDLREVLGSPYFFN 1030
GDFD+R+VL SPYFFN
Sbjct: 1005 GDFDMRDVLESPYFFN 1020
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2
Length = 1021
Score = 1572 bits (4071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/1042 (73%), Positives = 877/1042 (84%), Gaps = 33/1042 (3%)
Query: 1 MSNNKTPIFFSA--NKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58
MS+ KTPI + N+F P + N Y+N S +MWRN+ KQ S
Sbjct: 1 MSSTKTPISLTIKLNQFTDKPTGL-DINRYHN-------------SPIMWRNIIKQLSSR 46
Query: 59 HLKKPF----SRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMG 114
+K +R YSFLG QDS+ +D KF L + +G +GE L ++++
Sbjct: 47 TPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLS 106
Query: 115 RTSFGVLKN----DNFWCPRGYATVAEAV--SSTDVEEDVSIVEEIQELLQEMKKEEQRE 168
R +LKN ++F C + YA+VAEAV SSTD EEDVS+V+E+QELL E+KKEE+++
Sbjct: 107 RP---LLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQ 163
Query: 169 GENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLP 228
R +R + GMG KY+ LK RQVK+ETEAWE+AA EY+ELL DMCEQKLAPNLP
Sbjct: 164 FAFRR-RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLP 222
Query: 229 YMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTG 288
Y+KSLFLGWFEPLRD IA+EQE C K K AYA Y QLPADMMAVITMHKLMGLLMTG
Sbjct: 223 YVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTG 282
Query: 289 GEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLR 348
G+HG ARVVQAA +IGDAIEQEVRIH FLEKTKK+ K+K+ E+G+ VT EQEKLR
Sbjct: 283 GDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEH---VTQEQEKLR 339
Query: 349 KKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA 408
KKVT+L+KKQKL AV +IV+ QDD KPWGQDA+AKVGSR+IELL QTAYIQ PA+QLA
Sbjct: 340 KKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVD 399
Query: 409 PPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKW 468
PPDI PAF H++RTV+KETK S++YG+I+C+ LV KGLERTARHMVIPYMPMLVPPVKW
Sbjct: 400 PPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKW 459
Query: 469 TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSV 528
TGYDKG H +LPSYVMRTHGA+QQR+ VKR + QL+PVFEALDTLG+TKWR+N RVLSV
Sbjct: 460 TGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSV 519
Query: 529 LDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+DRIW+ GGRLADLVDR+D PLPE+P+TEDEA KW+WKV++VKKENRERHSQRCDIEL
Sbjct: 520 IDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIEL 579
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
KL+VARKMKDEEGF+YPHNVDFRGRAYPMHP+LNHLGSD+CRG+L FAEGR LG+SGL W
Sbjct: 580 KLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRW 639
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LKIHLANL+AGGV+KLS EGR+AFTENH+DDIFDSADKPLEGRRWWL AEDPFQCLAVCI
Sbjct: 640 LKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCI 699
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
NL+EA+RSSSPET ISHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA EKPADVYSGI
Sbjct: 700 NLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGI 759
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
AARVL I++RDAQRDPA FPDA+RA+ L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRR
Sbjct: 760 AARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 819
Query: 829 LKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTT 888
LKERGA +++ELFGA+CYAAKVTLTALGEMF+AAR IM+WLGECAKIIASEN+PVRWTT
Sbjct: 820 LKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTT 879
Query: 889 PLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA 948
PLGLPVVQPYRK+GRH +KTSLQILTLQ+ETEKVMVKRQRTAFPPNF+HSLDGSHMMMTA
Sbjct: 880 PLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTA 939
Query: 949 VACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
VACR+AGL FAGVHDSYWTHACDVD++NRILREKFVELYE PI E LL+SFQ S+P L+F
Sbjct: 940 VACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLF 999
Query: 1009 PPLPERGDFDLREVLGSPYFFN 1030
PPLPERGDFDLR+VL SPYFFN
Sbjct: 1000 PPLPERGDFDLRDVLESPYFFN 1021
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris
GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 1392 bits (3603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 710/1015 (69%), Positives = 819/1015 (80%), Gaps = 44/1015 (4%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVK-FVCLDMVPRGIHEVG------ 99
MWR ++KQA S + S + LG SQ S K + CL +G
Sbjct: 1 MWRYISKQAYSRKFRN--SHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSI 58
Query: 100 SGRIGEILNHEDYMGRTS-------------FGVLKNDNFWCP----------RGYATVA 136
RI + H + + S F +K D C R Y + A
Sbjct: 59 FSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSAA 118
Query: 137 EAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQ 196
EA++ST EED+ +EIQEL++EM KE + N + + + GMG GKY +L+ RQ
Sbjct: 119 EAIASTS-EEDI---DEIQELIEEMNKENEALKTNLQPKQPKTIG-GMGVGKYNLLRRRQ 173
Query: 197 VKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAK 256
+K+ETEAWE+AA EY+ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIA EQ+ C K
Sbjct: 174 IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233
Query: 257 HKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKF 316
++ AYAP+FDQLPA+MMAVITMHKLMGLLMTGG G ARVVQAA IG+AIE E RIH+F
Sbjct: 234 NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293
Query: 317 LEKTKKKNE-TKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKP 375
LEKTKK N + + ED GD + E+E++RKKV L+KKQKL VR+IVK QDD KP
Sbjct: 294 LEKTKKSNALSGDLEDTPGD----IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKP 349
Query: 376 WGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYG 435
WGQD KVG R+I++L +TAYIQ P DQL D PPDI PAF H L+TV ET GS++YG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYG 407
Query: 436 VIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDT 495
VI+C+PLV KGL++TARHMVIPYMPMLVPP W GYDKGA+ FLPSY+MRTHGAKQQR+
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREA 467
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE 555
VKR PKKQLEPVF+ALDTLGNTKWR+N +VL ++DRIW+ GGRLADLVDR DVPLPE+P+
Sbjct: 468 VKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPD 527
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
EDEAQ+RKW+WKV+ VKKEN ERHSQRCDIELKL+VARKMKDE+GFYYPHN+DFRGRAY
Sbjct: 528 AEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAY 587
Query: 616 PMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTEN 675
PMHPYLNHLGSDLCRGILEFAEGR LGKSGL WLKIHLAN+Y GGVDKLS+EGR+AF+EN
Sbjct: 588 PMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSEN 647
Query: 676 HLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCN 735
H++DIFDSA++PLEG+RWWL AEDPFQCLA CIN+ EALRS SPET IS++P+HQDGSCN
Sbjct: 648 HVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCN 707
Query: 736 GLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKL 795
GLQHYAALGRDTLGAAAVNLVA +KPADVYSGIAARVL I++RDA +DPA P+ +RA+L
Sbjct: 708 GLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARL 767
Query: 796 LLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTA 855
L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG ++ ELF A+CYAAK TLTA
Sbjct: 768 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTA 827
Query: 856 LGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTL 915
LGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPLGLPVVQPYRKLGRH +KTSLQILTL
Sbjct: 828 LGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTL 887
Query: 916 QRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEM 975
QRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+++GL+FAGVHDSYWTHA DVD+M
Sbjct: 888 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQM 947
Query: 976 NRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
N+ILREKFVELY+ PI ENLL+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 948 NKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum
GN=RPOT1-TOM PE=2 SV=2
Length = 1002
Score = 1388 bits (3592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/980 (71%), Positives = 807/980 (82%), Gaps = 36/980 (3%)
Query: 65 SRAYSFLGISQDSI---LRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSFGVL 121
S + LG+SQ+SI + KV+ + GI E S H ++F +
Sbjct: 45 STTHPNLGLSQNSIFSRISRKVRHL------EGICEESSKN-----PHLGLSQNSTFSSV 93
Query: 122 KNDNFWCP----------RGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGEN 171
K D C R Y + AEA+ ST EED+ +EIQEL++EM KE + N
Sbjct: 94 KGDFRICGKRGSGSLGRLRSYGSAAEAIVSTS-EEDI---DEIQELIEEMDKENEALKAN 149
Query: 172 GSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMK 231
+ + + GMG GKY L+ RQ+K+ETEAWE+AA EY+ELLMDMCEQKLAPNLPYMK
Sbjct: 150 LQPKQPKTIG-GMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMK 208
Query: 232 SLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEH 291
SLFLGWFEPLRDAIA EQ+ C K++ AYAP+FDQLPA+MMAVITMHKLMGLLMTGG
Sbjct: 209 SLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGT 268
Query: 292 GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNE-TKNKEDEEGDESNTVTTEQEKLRKK 350
G ARVVQAA IG+AIE E RIH+FLEKTKK N + + E+ GD + E+E+LRKK
Sbjct: 269 GSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGD----MMKERERLRKK 324
Query: 351 VTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPP 410
V L+KKQKL VR+IVK QDD KPWGQD KVG R+I++L +TAYIQ P DQL D PP
Sbjct: 325 VKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPP 384
Query: 411 DIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTG 470
DI PAF H L+TV ET GS++YGVI+C+PLV KGL++TARHMVIPYMPMLVPP W G
Sbjct: 385 DIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLG 442
Query: 471 YDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLD 530
YDKG + FLPSY+MRTHGAKQQR+ VKR PKKQLEPVF+ALDTLGNTKWRVN +VL ++D
Sbjct: 443 YDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVD 502
Query: 531 RIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL 590
RIW+ GGRLADLVDR DVPLPE P+TEDEA++RKW+WKV+ VKKEN ERHSQRCDIELKL
Sbjct: 503 RIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKL 562
Query: 591 SVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLK 650
+VARKMKDE+GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LG SGL WLK
Sbjct: 563 AVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLK 622
Query: 651 IHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINL 710
IHLAN+Y GGVDKLS+EGR+AF+ENHL+DIFDSA++PLEG+RWWL AEDPFQCLA CIN+
Sbjct: 623 IHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINI 682
Query: 711 TEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAA 770
EALRS SPET IS++P+HQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVYSGIAA
Sbjct: 683 AEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAA 742
Query: 771 RVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 830
RVL I++RDA +DPA P+ +RA+LL++QVDRKLVKQTVMTSVYGVTYIGARDQIK+RLK
Sbjct: 743 RVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLK 802
Query: 831 ERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPL 890
ERG ++ ELF A+CYAAK TLTALGEMF+AAR IMSWLG+CAKIIA EN PVRWTTPL
Sbjct: 803 ERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPL 862
Query: 891 GLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 950
GLPVVQPYRKLGRH +KTSLQILTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+A
Sbjct: 863 GLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIA 922
Query: 951 CRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPP 1010
C+++GL+FAGVHDSYWTHACDVD+MN+ILREKFVELY+ PI ENLL+SFQ+SFP L FPP
Sbjct: 923 CKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPP 982
Query: 1011 LPERGDFDLREVLGSPYFFN 1030
LPERGDFDLREVL SPYFFN
Sbjct: 983 LPERGDFDLREVLESPYFFN 1002
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1
Length = 1011
Score = 1356 bits (3510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/1038 (66%), Positives = 813/1038 (78%), Gaps = 35/1038 (3%)
Query: 1 MSNNKTPIFFSANK--FDHL-PVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAIS 57
MS+ +TP+F + FDHL P+ +KP I P+P S MWRN+AKQAIS
Sbjct: 1 MSSAQTPLFLANQTKVFDHLIPL----------HKPFISSPNPVSQSFPMWRNIAKQAIS 50
Query: 58 LHLKK--PFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEILNHEDYMG- 114
+ S+ L S +SI + F ++ H G + I E++
Sbjct: 51 RSAARLNVSSQTRGLLVSSPESIFSKNLSFR-FPVLGSPCHGKGFRCLSGITRREEFSKS 109
Query: 115 -RTSFGVLKNDNFWCPRGYATVAEA-VSSTDVEEDVSIVEEIQELLQEMKKEEQREGENG 172
R G L RGY +VAE V STDVEE+ + E ++E+ +E K+E R
Sbjct: 110 ERCLSGTLA-------RGYTSVAEEEVLSTDVEEEPEVDELLKEMKKEKKRESHR----- 157
Query: 173 SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKS 232
S R +++ GMG K++ L RQVKIETE WE+AA EY ELL DMCEQKLAPNLPY+KS
Sbjct: 158 SWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKS 217
Query: 233 LFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHG 292
LFLGWFEPLRDAIAK+QE R+ K K YA Y DQLPAD ++VITMHKLMG LMTGG++G
Sbjct: 218 LFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNG 277
Query: 293 RARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVT 352
+VV AAC +GDAIEQE+RI FL+K KK ++ E+ G E+ T EQ+KLRKKV
Sbjct: 278 CVKVVHAACTVGDAIEQEIRICTFLDKKKKGDDN---EESGGVENETSMKEQDKLRKKVN 334
Query: 353 DLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDI 412
+LIKKQKL AVR+I++ D KPW D RAKVGSR+IELL +TAYIQSPADQ + PD+
Sbjct: 335 ELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDV 394
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
PAF H + V+K + +KYGVIEC+PLV KGLE++ R+ V+PYMPMLVPP+KW+GYD
Sbjct: 395 RPAFVHTFK-VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYD 453
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI 532
KGA+ FL SY+M+THGAKQQR+ +K PK QL+PVFEALDTLG+TKWRVN RVL+V+DRI
Sbjct: 454 KGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRI 513
Query: 533 WSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSV 592
WS GG +AD+VDR+DVPLPEKP+TEDE L+KW+W+V++ KK N ERHSQRCD ELKLSV
Sbjct: 514 WSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSV 573
Query: 593 ARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIH 652
ARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRG+LEFAEGR +G SGL WLKIH
Sbjct: 574 ARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIH 633
Query: 653 LANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTE 712
LANLYAGGVDKLS +GRLAFTENHLDDIFDSAD+PLEG RWWL+AEDPFQCLAVCI+LTE
Sbjct: 634 LANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTE 693
Query: 713 ALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARV 772
ALRS SPET +SHIP+HQDGSCNGLQHYAALGRDTLGA AVNLVA EKPADVYSGIA RV
Sbjct: 694 ALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRV 753
Query: 773 LVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 832
L I++RDA RDP VFP+ALRA+ LL+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 754 LDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 813
Query: 833 GAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGL 892
+E E+FGA+CYAAKVTL A+ EMFQAAR IM W GECAKIIASEN+ VRWTTPLGL
Sbjct: 814 SDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGL 873
Query: 893 PVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACR 952
PVVQPY ++G VKTSLQ L+LQ ET++V+V+RQRTAFPPNF+HSLDGSHMMMTAVAC+
Sbjct: 874 PVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACK 933
Query: 953 KAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLP 1012
+AG+ FAGVHDS+WTHACDVD++N ILREKFVELY PI ENLL+SF++SFP L FPPLP
Sbjct: 934 RAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLP 993
Query: 1013 ERGDFDLREVLGSPYFFN 1030
ERGD DL+ VL SPYFFN
Sbjct: 994 ERGDLDLKVVLDSPYFFN 1011
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana
GN=RPOT1 PE=2 SV=1
Length = 976
Score = 1330 bits (3443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/992 (65%), Positives = 771/992 (77%), Gaps = 24/992 (2%)
Query: 47 MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHE---VGSGRI 103
MWRN+ +A SL R FL S S V V RGI + R
Sbjct: 1 MWRNILGRA-SL-------RKVKFLSDSSSSGTHYPVNRV------RGILSSVNLSGVRN 46
Query: 104 GEILNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKK 163
G +N + MG ++ + GYAT A+A+ STD E++ S +E+ EL+ EM+K
Sbjct: 47 GLSINPVNEMG--GLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEVNELITEMEK 104
Query: 164 EEQREGENG--SGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQ 221
E +R + + +RV GMG+ K+ MLK RQVK+ETE WE+AA E RE+L DMCEQ
Sbjct: 105 ETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQ 164
Query: 222 KLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKL 281
KLAPNLPYMKSLFLGWFEP+R+AI + + ++ K K+ YAP+ +QLPAD MAVITMHK+
Sbjct: 165 KLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKM 224
Query: 282 MGLLMTGGEH-GRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGD--ESN 338
MGLLMT E G ++V AA IG+A+EQEVRI+ FL+K KKN T + E +
Sbjct: 225 MGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEE 284
Query: 339 TVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398
V E EK RK+VT L++K KL V+ +V+ D FKPWGQ+A+ KVG+R+I+LL + AYI
Sbjct: 285 IVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYI 344
Query: 399 QSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPY 458
Q PA+Q D PPDI PAF RTV+ E S++YG IEC+PLVLKGL+++ARHMVIPY
Sbjct: 345 QPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPY 404
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTK 518
+PML+PP WTGYD+GAHFFLPSYVMRTHGAKQQR +KRTPK+QLEPV+EALDTLGNTK
Sbjct: 405 LPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTK 464
Query: 519 WRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRE 578
W++N +VLS++DRIW+ GGR+ LVDR DVP+PE+PE ED+ + + W+W+ + K+N E
Sbjct: 465 WKINKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNE 524
Query: 579 RHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 638
RHSQRCDIELKL VARKMKDEEGFYYPHNVDFRGRAYP+HPYLNHLGSDLCRGILEF EG
Sbjct: 525 RHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEG 584
Query: 639 RTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAE 698
+ LGKSGL WLKIH+ANLYAGGVDKL++E R+AFTE+HL+DIFDS+D+PLEG+RWWL AE
Sbjct: 585 KPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAE 644
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
DPFQCLA CINL+EALRS PE ISHIP+HQDGSCNGLQHYAALGRD LGA AVNLV
Sbjct: 645 DPFQCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTG 704
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
EKPADVY+ IAARVL I+Q+DA+ DP FP+A AKL+L QVDRKLVKQTVMTSVYGVTY
Sbjct: 705 EKPADVYTEIAARVLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTY 764
Query: 819 IGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
GARDQIK+RLKERG +++ F ASCYAAK+TL AL EMF+AAR I SW G+CAKIIA
Sbjct: 765 SGARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIA 824
Query: 879 SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHS 938
SEN V WTTPLGLPVVQPYRK GRH VKT+LQ+LTL RET+KVM +RQ TAF PNF+HS
Sbjct: 825 SENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHS 884
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LDGSHMMMTAVAC +AGL+FAGVHDS+WTHACDVD MN ILREKFVELYE PI ENLL+S
Sbjct: 885 LDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLES 944
Query: 999 FQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FQKSFP + FPPLPERGDFDLR+VL S YFFN
Sbjct: 945 FQKSFPDISFPPLPERGDFDLRKVLESTYFFN 976
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris
GN=RPOT3 PE=2 SV=1
Length = 977
Score = 1207 bits (3124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/837 (68%), Positives = 681/837 (81%), Gaps = 8/837 (0%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMA 255
Q+K ETEAWE+ EYREL +MCE+KLAPNLPY+K L LGWFEPLR AI KEQ
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTV 206
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA-RVVQAACIIGDAIEQEVRIH 314
KH+ A+AP+ D LPAD MAVI MHKLMGLLM GG+ R +VVQAA IG A+E EVRIH
Sbjct: 207 KHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIH 266
Query: 315 KFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
FLEKTKK + + D S E LRK+V LIK+ ++ VR+++K ++ +
Sbjct: 267 NFLEKTKKLQKHMTGAQSQEDMSR----ETMILRKRVKSLIKRNRVVEVRKLMKSEEP-E 321
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET-KGGSKK 433
WG+D +AK+G R++ELLT+TAY+Q P DQ AD PPDI PAF H R +++ K KK
Sbjct: 322 SWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKK 381
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
YGVIEC+PLV+ G++RT + M+IPY+PMLVPP KW GYDKG + FLPSY+MRTHG+++Q+
Sbjct: 382 YGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQ 441
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
D V+ P KQ++ V+EALDTLG+TKWRVN R+LSV++ IW+ GG +A LVDR DVP+PE
Sbjct: 442 DAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL 501
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
++D +++KW+W+VR KK N+E HSQRCD ELKLSVARK+KDEEGFYYPHN+DFRGR
Sbjct: 502 -HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGR 560
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYPMHP+LNHL SDLCRGILEFAEGR LGKSGL WLKIHLA+LYAGG++KL ++ RLAF
Sbjct: 561 AYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFV 620
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
ENH+DDI DSA+ PL G RWWL AEDPFQCLA CINL+EAL+SSSP T SH+P+HQDGS
Sbjct: 621 ENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGS 680
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD++ AAAVNLVA +KPADVY+ IA RV II+ D+ +DPA P+AL A
Sbjct: 681 CNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLA 740
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
KLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G ++ LF ASCYAAKVTL
Sbjct: 741 KLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTL 800
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
ALGE+FQAARG M+WLG+CAK+IASENQPVRWTTPLGLPVVQPY K RH ++TSLQ+L
Sbjct: 801 AALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVL 860
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
LQRE + V V++QRTAFPPNFVHSLDGSHMMMTAVACR AGL FAGVHDS+WTHACDVD
Sbjct: 861 ALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVD 920
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+MNRILREKFVELY MPI E+LL+SFQ S+P L FPPLP+RGDFDL EVL SPYFFN
Sbjct: 921 QMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-SYL PE=3 SV=1
Length = 977
Score = 1207 bits (3124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/837 (68%), Positives = 681/837 (81%), Gaps = 8/837 (0%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMA 255
Q+K ETEAWE+ EYREL +MCE+KLAPNLPY+K L LGWFEPLR AI KEQ
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTV 206
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA-RVVQAACIIGDAIEQEVRIH 314
KH+ A+AP+ D LPAD MAVI MHKLMGLLM GG+ R +VVQAA IG A+E EVRIH
Sbjct: 207 KHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIH 266
Query: 315 KFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
FLEKTKK + + D S E LRK+V LIK+ ++ VR+++K ++ +
Sbjct: 267 NFLEKTKKLQKHMTGAQSQEDMSR----ETMILRKRVKSLIKRNRVVEVRKLMKSEEP-E 321
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET-KGGSKK 433
WG+D +AK+G R++ELLT+TAY+Q P DQ AD PPDI PAF H R +++ K KK
Sbjct: 322 SWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKK 381
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
YGVIEC+PLV+ G++RT + M+IPY+PMLVPP KW GYDKG + FLPSY+MRTHG+++Q+
Sbjct: 382 YGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQ 441
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
D V+ P KQ++ V+EALDTLG+TKWRVN R+LSV++ IW+ GG +A LVDR DVP+PE
Sbjct: 442 DAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL 501
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
++D +++KW+W+VR KK N+E HSQRCD ELKLSVARK+KDEEGFYYPHN+DFRGR
Sbjct: 502 -HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGR 560
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYPMHP+LNHL SDLCRGILEFAEGR LGKSGL WLKIHLA+LYAGG++KL ++ RLAF
Sbjct: 561 AYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFV 620
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
ENH+DDI DSA+ PL G RWWL AEDPFQCLA CINL+EAL+SSSP T SH+P+HQDGS
Sbjct: 621 ENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGS 680
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD++ AAAVNLVA +KPADVY+ IA RV II+ D+ +DPA P+AL A
Sbjct: 681 CNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLA 740
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
KLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G ++ LF ASCYAAKVTL
Sbjct: 741 KLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTL 800
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
ALGE+FQAARG M+WLG+CAK+IASENQPVRWTTPLGLPVVQPY K RH ++TSLQ+L
Sbjct: 801 AALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVL 860
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
LQRE + V V++QRTAFPPNFVHSLDGSHMMMTAVACR AGL FAGVHDS+WTHACDVD
Sbjct: 861 ALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVD 920
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+MNRILREKFVELY MPI E+LL+SFQ S+P L FPPLP+RGDFDL EVL SPYFFN
Sbjct: 921 QMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-TOM PE=2 SV=2
Length = 977
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/837 (68%), Positives = 683/837 (81%), Gaps = 7/837 (0%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMA 255
Q+K ETEAWE+ EYREL +MCE+KLAPNLPY+K L LGWFEPLR AI KEQ
Sbjct: 146 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTV 205
Query: 256 KHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA-RVVQAACIIGDAIEQEVRIH 314
KH+ A+AP+ D LPAD MAVI MHKLMGLLM GG+ R +VVQAA IG A+E EVRIH
Sbjct: 206 KHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIH 265
Query: 315 KFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFK 374
FLEKTKK + + D S E LRK+V LIK+ ++ VR+++K ++ +
Sbjct: 266 NFLEKTKKLQKHMTGAQSQEDMSK----ETMILRKRVKSLIKRNRVVEVRKLMKSEEP-E 320
Query: 375 PWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKET-KGGSKK 433
WG+D +AK+G R++ELLT+TAY+Q P DQ AD PPDI PAF H + +++ K KK
Sbjct: 321 SWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKK 380
Query: 434 YGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQR 493
YGVIEC+PLV+ G++RT + M+IPY+PMLVPP KW GYDKG + FLPSY+MRTHG+++Q+
Sbjct: 381 YGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQ 440
Query: 494 DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEK 553
D V+ P KQ++ V+EALDTLG+TKWRVN R+L+V++ IW+ GG +A LVDR DVP+PE
Sbjct: 441 DAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPEL 500
Query: 554 PETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGR 613
++D +++KW+WKVR KK N+E HSQRCD ELKLSVARK+KDEEGFYYPHN+DFRGR
Sbjct: 501 SNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGR 560
Query: 614 AYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFT 673
AYPMHP+LNHL SDLCRGILEFAEGR LGKSGL WLKIHLA+LYAGGV+KL ++ RLAF
Sbjct: 561 AYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFV 620
Query: 674 ENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGS 733
ENH+ DI DSA+ PL G RWWL AEDPFQCLA CINL+EAL+SSSP T ISH+P+HQDGS
Sbjct: 621 ENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGS 680
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRA 793
CNGLQHYAALGRD++ AAAVNLVA EKPADVY+ IA RV II+ D+ +DPA+ P+AL A
Sbjct: 681 CNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLA 740
Query: 794 KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTL 853
KLL+ QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G ++ LF ASCYAAKVTL
Sbjct: 741 KLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTL 800
Query: 854 TALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQIL 913
ALGE+FQAARG M+WLG+CAK+IA ENQPVRWTTPLGLPVVQPY K RH ++TSLQIL
Sbjct: 801 AALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQIL 860
Query: 914 TLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVD 973
LQRE + V V++QRTAFPPNFVHSLDGSHMMMTAVACR AGL FAGVHDS+WTHACDVD
Sbjct: 861 ALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVD 920
Query: 974 EMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
+MNRILREKFVELY +PI E+LL++FQKS+P L FPPLP+RGDF+LREVL SPYFFN
Sbjct: 921 QMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana
GN=RPOT3 PE=2 SV=1
Length = 993
Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/848 (65%), Positives = 681/848 (80%), Gaps = 17/848 (2%)
Query: 188 KYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 247
K+ L+ RQVK ETEAWE+ +EYR+L +MCE+ LAPNLPY+K +FLGWF+PL+D I +
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217
Query: 248 EQ--ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305
EQ ++ + K + AYAP+ + LPAD MAVI MHK+MGL+M+G E G +VVQAA IG
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGI 277
Query: 306 AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365
AIEQEVRIH FL++T+K N ++E+ E++ LRK+V LI+++++ +
Sbjct: 278 AIEQEVRIHNFLKRTRKNNAGDSQEE---------LKEKQLLRKRVNSLIRRKRIIDALK 328
Query: 366 IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSK 425
+VK + KPWG+ +AK+GSR++ELL + AY+Q P Q D+ P+ PAF H +TV+K
Sbjct: 329 VVKSEGT-KPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTK 387
Query: 426 ETKGGSK---KYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSY 482
GSK +YGVIEC+ L+L GL+++A+HM+IPY+PMLVPP +W GYDKG + FLPSY
Sbjct: 388 YP--GSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSY 445
Query: 483 VMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADL 542
+MRTHG+K+Q+D +K K VFEALDTLGNTKWRVN +L V++R+W+ GG +A L
Sbjct: 446 IMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGL 505
Query: 543 VDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF 602
V+R DVP+PEKP +ED +L+ W+W R K NRERHS RCD+ELKLSVARKMKDEEGF
Sbjct: 506 VNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGF 565
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVD 662
YYPHN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGR LGKSGLHWLKIHLANLYAGGV+
Sbjct: 566 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVE 625
Query: 663 KLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETF 722
KLSH+ RLAF ENHLDDI DSA+ P+ G+RWWLKAEDPFQCLA C+ LT+AL+S SP +
Sbjct: 626 KLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSV 685
Query: 723 ISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQR 782
ISH+P+HQDGSCNGLQHYAALGRD+ AAAVNLVA EKPADVYS I+ RV I+++D+ +
Sbjct: 686 ISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSK 745
Query: 783 DPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
DP P A AK+L++QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G +E LF
Sbjct: 746 DPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLF 805
Query: 843 GASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLG 902
A+CY+AKVTL ALGE+F+AAR IMSWLG+CAKIIAS+N PVRW TPLGLPVVQPY +
Sbjct: 806 AAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSE 865
Query: 903 RHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVH 962
RH ++TSLQ+L LQRE V V++QRTAFPPNFVHSLDG+HMMMTAVACR+AGL FAGVH
Sbjct: 866 RHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVH 925
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVFPPLPERGDFDLREV 1022
DSYWTHACDVD MNRILREKFVELY PI E+LL SFQ+S+P LVFPP+P+RGDFDL+EV
Sbjct: 926 DSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEV 985
Query: 1023 LGSPYFFN 1030
L S YFFN
Sbjct: 986 LKSQYFFN 993
>sp|Q8L6J2|RPO2A_TOBAC DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum
GN=RPOT2-SYL PE=3 SV=1
Length = 332
Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust.
Identities = 288/332 (86%), Positives = 316/332 (95%)
Query: 699 DPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAR 758
DPFQCLAVCINL+EA+RSSSPET +SHIPVHQDGSCNGLQHYAALGRD LGAAAVNLVA
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 60
Query: 759 EKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTY 818
EKPADVYSGIAARVL I++RDAQRDPA FPDA+RA++L++QVDRKLVKQTVMTSVYGVTY
Sbjct: 61 EKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTY 120
Query: 819 IGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIA 878
IGARDQIKRRLKERGA +++ELFGA+CYAAKVTLTALGEMF+AAR IM+WLGECAKIIA
Sbjct: 121 IGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIA 180
Query: 879 SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHS 938
SEN+PVRWTTPLGLPVVQPYRK+GRH +KTSLQILTLQRETEKVMVKRQRTAFPPNF+HS
Sbjct: 181 SENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHS 240
Query: 939 LDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDS 998
LDGSHMMMTAVACR+AGL FAGVHDSYWTHACDVD++NRILREKFVELYE PI E LL+S
Sbjct: 241 LDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLES 300
Query: 999 FQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
FQ S+P L+FPPLPERGDFD+R+VL SPYFFN
Sbjct: 301 FQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 332
>sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=1
SV=2
Length = 1351
Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust.
Identities = 315/860 (36%), Positives = 459/860 (53%), Gaps = 88/860 (10%)
Query: 195 RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSL---FLGWFEPLRDAIAKEQER 251
RQ +E A E A ++ D E K ++ K+L W+ + + +E
Sbjct: 415 RQKVLENRATEAARERWKH---DFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINH 471
Query: 252 CR---------------MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARV 296
CR + +++ Y PY + M VIT+ +L+ L TGG R
Sbjct: 472 CRSLLSEKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRT 531
Query: 297 VQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIK 356
+A +G AIE E R + L+ E + + N + E +KL + + +
Sbjct: 532 ARAVISVGKAIEMEFRSEQVLKS----------ESQAFRDVNKKSPEFKKLVQNAKSVFR 581
Query: 357 KQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQ-SPADQLADAPPD-IFP 414
++ + + W Q RA++GS +I +L Q A + D + A P
Sbjct: 582 SSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP 632
Query: 415 AFTHALRTVSKETKGGSKKYGVIECNPLVLKGL--ERTARHMVIPYMPMLVPPVKWTGYD 472
AF H + GSK GV++ + +++ L ER + +PMLV P W +
Sbjct: 633 AFAHGY-----QYHNGSK-LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWR 686
Query: 473 KGAHFFLPSYVMRTHGAKQQRDTVKRTPKK-QLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
G + + S ++RT + +Q +K ++ V++ L+ LG T W VN +V V+ +
Sbjct: 687 SGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQ 746
Query: 532 IWSCGGRLADLVDRND--VPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
+W+ G D+ D V P P+ D + LR W+ +V+ + + S RCD K
Sbjct: 747 VWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYK 806
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L +AR E+ Y+PHN+DFRGRAYP+ P+ NHLG+D+ RG+L F G+ LG SGL WL
Sbjct: 807 LEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWL 865
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIHL+NL+ G DKL + R+AFTE+HL DI DSA+ PL G RWW A+ P+Q LA C
Sbjct: 866 KIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFE 923
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
L E ++ +PE FISH PVHQDG+CNGLQHYAALG D GA VNLV +KP DVY+ +A
Sbjct: 924 LNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVA 983
Query: 770 ARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 829
V ++ A++ AK+L ++ RK+VKQTVMT+VYGVTY+GA QI ++L
Sbjct: 984 RLVQKRLEIAAEKGDE------NAKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQL 1037
Query: 830 KERGAPM--EEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASE------- 880
+P+ + E S Y K +A+ E+F +A I WLGE AK I+
Sbjct: 1038 ----SPIFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVDE 1093
Query: 881 ------NQP-----VRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR--ETEKVMVKRQ 927
N+P V WTTPLGLP+VQPYR+ + V+T+LQ + + V +RQ
Sbjct: 1094 KSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQ 1153
Query: 928 RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
+ PPNF+HSLD SHM+++A C K GL FA VHDSYWTHA D+D MN +LRE+F++L+
Sbjct: 1154 KAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLH 1213
Query: 988 EMPIFENLLDSFQKSFPKLV 1007
E+ + L + F + + V
Sbjct: 1214 EVDLVLRLKEEFDQRYKNYV 1233
>sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpo41 PE=3 SV=2
Length = 1154
Score = 523 bits (1347), Expect = e-147, Method: Compositional matrix adjust.
Identities = 311/859 (36%), Positives = 447/859 (52%), Gaps = 85/859 (9%)
Query: 230 MKSLFLGWFEPLRDAIAKE---------QERCRMAKHKVAYAPYFDQLPADMMAVITMHK 280
+ SLF W+ L +E E ++ Y P+ L + +A +T+ +
Sbjct: 323 VSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIME 382
Query: 281 LMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTV 340
+ L ARV +G + E+E FL + ++ E KNK ++ +
Sbjct: 383 VAQLSTNPRYDRGARVTTLLGGLGRSFERE-----FLSEQIQRQE-KNKSYKDKKRLKEL 436
Query: 341 TTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQS 400
+ K R+ V +L +L R + W KVGS + LL A I+
Sbjct: 437 FNDPRKFRQAVKNL----RLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIEV 492
Query: 401 PADQLADAP--PDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTAR--HMVI 456
A L+ AF H + +K G+I + K L R H+
Sbjct: 493 TAKDLSTGGILKQEVAAFVHTYQY------SNGRKVGMIVPHVEFYKLLSRDIEKPHLHP 546
Query: 457 PYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRD-TVKRTPKKQLEPVFEALDTLG 515
+PMLV P WT + G +++ ++R GA +Q D +K + QL+ +F+A+ +LG
Sbjct: 547 QLLPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLG 606
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNV 572
WR+N R+ +VL RIW+ G + + R D+P P + + W + + +
Sbjct: 607 KVSWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMP-PYPKNSINPRDKVIWHTRRKEL 665
Query: 573 KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGI 632
HSQRCD KL +AR +E+ FY+PH++DFRGRAYP+ +L+H+ +D+CRG+
Sbjct: 666 AALKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCRGL 724
Query: 633 LEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRR 692
LEF+ G+ LG GL+WLK+HLANL+ G+ K R AF ++++ ++FDSAD+PL+G +
Sbjct: 725 LEFSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDGNK 782
Query: 693 WWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAA 752
WW KA+DPFQ LA C + EA+RS E++ISHIP+ QDG+CNGLQHYAALG D GA
Sbjct: 783 WWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQ 842
Query: 753 VNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
VNL + P+DVY +A V +++DA+ + A L +V R +VK TVMT+
Sbjct: 843 VNLWPSDHPSDVYEAVAEIVRGFLKKDAEAGDEM------ANFLKDKVTRSVVKPTVMTN 896
Query: 813 VYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGE 872
VYGVTY+GAR QI +L E ME+ ++ + Y K AL +F A I WL
Sbjct: 897 VYGVTYVGARKQISEKL-ENIDGMEKLKVADYANYLTKKVFEALRSLFTQAHEIQDWLSA 955
Query: 873 CAKIIA-------------SENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQR-- 917
C +I E PV WTT L LP+VQPYR ++T+LQ + ++
Sbjct: 956 CCNLITHSLPADYIKEGIKDELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQTVFIEERD 1015
Query: 918 ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNR 977
T V +Q TAFPPNF+HSLD +HM MT + C + + FA VHDSYWTHACDVD+MN
Sbjct: 1016 RTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNINFAAVHDSYWTHACDVDQMNS 1075
Query: 978 ILREKFVELYEMPIFENLLDSFQ--------------------------KSFPKLVFPPL 1011
+LRE FV L+ I E L F+ KS+ L FPPL
Sbjct: 1076 LLREAFVLLHSNNIMERLKQEFEERYKGFLVSKKAIKANDEDLKAKFGNKSYIPLEFPPL 1135
Query: 1012 PERGDFDLREVLGSPYFFN 1030
P RG DL++VL S YFF+
Sbjct: 1136 PARGALDLKKVLESKYFFS 1154
>sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=cyt-5 PE=3 SV=2
Length = 1423
Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust.
Identities = 313/893 (35%), Positives = 465/893 (52%), Gaps = 111/893 (12%)
Query: 196 QVKIETEAWEKAANEYRELLMDMCEQKLAPNL--PYMKSLFLGWFEPLRD---AIAKEQE 250
Q K+E + + + +RE + + L +L P + S W + L + E E
Sbjct: 364 QSKLEKDCVDASLARWREENESLQKMGLNTSLDTPSLNSRLYQWQKDLETRLRTMLVEVE 423
Query: 251 RCRMAKHK-------VAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ M K Y P+ Q + +A +T+ + L GG H + + I
Sbjct: 424 KSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASLITHI 483
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
E+++R+ K K+N K K + S LR K + A
Sbjct: 484 AKFAEEDIRVQKAEALISKRNLRKAKSKQHNPRS--------VLRFKNSTASAGSSDMAD 535
Query: 364 RRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYI----QSPADQLADAPPDIFPAFTHA 419
V + D + W R KVG+ ++ L TA I + P + PAF+H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLITQNQ--PAFSHV 593
Query: 420 LRTVSKETKGGSKKYGVIECNPLVLKGLERT------ARHMVIPYMPMLVPPVKWTGYDK 473
++ KG KK G I N V++ L R ARH+ PM+ PP W ++K
Sbjct: 594 MQL----RKG--KKIGTIIPNKAVVELLVREPVPDFLARHL-----PMVTPPDPWVSFEK 642
Query: 474 GAHFFLPSYVMR-THGAKQQR-DTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDR 531
GA+ + V+R +G ++QR T + ++ VF+ LD LG T W++N+ V V+
Sbjct: 643 GAYLETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLD 702
Query: 532 IWSCGGRLADLVDRN---DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIEL 588
+W+ G ++A++ + D+P PE TED R W +++ ++ E HSQRC +
Sbjct: 703 VWNSGKQVANIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGLHSQRCFMNF 761
Query: 589 KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648
+L +AR +D+ FY+PHNVDFRGRAYP+ PYLNH+G+D RG++ FA+G+ LG+SGL W
Sbjct: 762 QLEIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRW 820
Query: 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCI 708
LK+HLAN+Y G DK S + R F + ++++I DS + PL G +WWL+AEDP+QCLA C
Sbjct: 821 LKVHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCF 878
Query: 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGI 768
L AL P ++SH+P+HQDG+CNGLQHYAALG DT GA VNLV ++PADVYS +
Sbjct: 879 ELAAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAV 938
Query: 769 AARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRR 828
A V+ I+ D +D AK + ++ RK+VKQTVMT+VYGVTY+GAR Q+ ++
Sbjct: 939 AKLVIKGIEDDLAKDNEF------AKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQ 992
Query: 829 LKERGAPMEEAELFGASCYAAKVT---LTALGEMFQAARGIMSWLGECAKIIA------- 878
++ + A+ A+ VT A+ MF+ A I +WLGE +
Sbjct: 993 IEAAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQ 1052
Query: 879 ------SENQP-----------------------------------VRWTTPLGLPVVQP 897
SE P + WTTPL +PVVQP
Sbjct: 1053 LDEFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQP 1112
Query: 898 YRKLGRHTVKTSLQ--ILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
YRK G TV T +Q ++T+ ++ V ++Q AFPPNF+HSLD SHM+++A+ C + G
Sbjct: 1113 YRKHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELG 1172
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLVF 1008
LTFA VHDS+WTHA D+D MN +LR+ F+ ++ + L FQ + ++
Sbjct: 1173 LTFAAVHDSFWTHASDIDSMNAVLRDAFIRIHSEDVIGRLAAEFQARYKNSLY 1225
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1006 LVFPPLPERGDFDLREVLGSPYFFN 1030
LVFPP+PE+GDFD+R + S YFF+
Sbjct: 1399 LVFPPIPEKGDFDVRSLKDSTYFFS 1423
>sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens GN=POLRMT
PE=1 SV=2
Length = 1230
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 281/687 (40%), Positives = 398/687 (57%), Gaps = 51/687 (7%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTH--ALRTVSKETKGGS 431
+PW + ++G + E+L Q + D+ + P H + R V
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVYSFRNV-------- 615
Query: 432 KKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMRT-H 487
++ G+++ +P ++ LE+ A + +PML PP+ WT GA P+ +MRT
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 488 GAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGG--RLADLVDR 545
GA Q ++ ++ P L +AL LGN WRVN RVL ++ +++ G +L
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 546 NDVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 599
++ P LP +A+LR+ ++ + +K RE HS R + +LS+A+ ++D
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRR---ELAHCQKVAREMHSLRAEALYRLSLAQHLRDR 792
Query: 600 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 659
F+ PHN+DFRGR YP P+ NHLGSD+ R +LEFA+GR LG GL WLKIHL NL G
Sbjct: 793 V-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 850
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
+ RLAF E +DDI DSAD+PL GR+WW+ AE+P+Q LA C+ + A+R+S P
Sbjct: 851 LKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 910
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 779
++SH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVYSG+AA+V V ++D
Sbjct: 911 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQD 970
Query: 780 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
AQR V A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 971 AQRGMRV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 1024
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF R I WL E A++I+ V W TPLG+PV+QPYR
Sbjct: 1025 -VWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYR 1083
Query: 900 KLGR-HTVKTSLQILTLQRE---TEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAG 955
+ + +Q +T + K ++Q+ FPPNF+HSLD SHMM+TA+ C + G
Sbjct: 1084 LDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1143
Query: 956 LTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFP----------- 1004
LTF VHD YWTHA DV MN++ RE+FV L+ PI ++L K F
Sbjct: 1144 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQ 1203
Query: 1005 -KLVFPPLPERGDFDLREVLGSPYFFN 1030
K +P+ G FDL +V S YFF+
Sbjct: 1204 LKETLQAVPKPGAFDLEQVKRSTYFFS 1230
>sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial OS=Mus musculus GN=Polrmt
PE=2 SV=1
Length = 1207
Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/693 (40%), Positives = 390/693 (56%), Gaps = 57/693 (8%)
Query: 374 KPWGQDARAKVGSRVIELLTQTAYIQSPADQLA-DAPPDIFPAFTHALRTVSKETKGGSK 432
+PW ++G ++ ELL Q +Q P A P H S +
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARQGAQRSIPVLYHVYSFRS------YR 587
Query: 433 KYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKWTGYDKGAHFFLPSYVMR-THG 488
+ G+++ +P LE A + +PML PP+ WT GA+ + +MR T G
Sbjct: 588 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 647
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVD--RN 546
Q + +++ P QL +AL LGN WRVN +L ++ +I+ G + V R+
Sbjct: 648 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 707
Query: 547 DVP------LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
+ P LP +++LRK ++ K RE HS R + +LS+A+ ++
Sbjct: 708 EAPRPARYQLPPGSTPVHKSELRK---ELARCLKVAREMHSLRSEALYRLSLAQHLR-HR 763
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
F+ PHN+DFRGR YP P+ NHLGSDL R +LEFAEGR LG GL WLKIHL NL G
Sbjct: 764 VFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGL 822
Query: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
S RLAF + +++I DSAD PL GR+WW++A++P+Q LA C+ + A+RS P
Sbjct: 823 KKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPA 882
Query: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 780
+ISH+PVHQDGSCNGLQHYAALGRD++GAA+VNL + P DVY +A +V Q+DA
Sbjct: 883 AYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDA 942
Query: 781 QRDPAVFPDALR-AKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 839
+ + LR A++L + RK+VKQTVMT VYGVT G R QI++RL+E +E
Sbjct: 943 K-------EGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF 995
Query: 840 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 899
++ AS Y + +L EMF + R I WL E A +I+ PV W TPLG+P++QPY
Sbjct: 996 -VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYH 1054
Query: 900 KLGRHTVKTSLQILTLQR---ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGL 956
+ + VK LQ +TL E++K +Q+ FPPNF+HSLD SHMM+TA+ C + GL
Sbjct: 1055 RESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGL 1114
Query: 957 TFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKL---------- 1006
F VHD +WTHA D+ MN + RE+FV L+ PI E+L +K F +
Sbjct: 1115 IFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSE 1174
Query: 1007 ---------VFPPLPERGDFDLREVLGSPYFFN 1030
LP+ G FDL +V+ S YFF+
Sbjct: 1175 RALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207
>sp|P07659|RPOL_BPT3 DNA-directed RNA polymerase OS=Enterobacteria phage T3 GN=1 PE=3 SV=1
Length = 884
Score = 297 bits (761), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 258/914 (28%), Positives = 420/914 (45%), Gaps = 149/914 (16%)
Query: 187 GKYRMLKM--RQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDA 244
G+ R LKM RQ K A E A N + L LA LP + + + W E
Sbjct: 48 GERRFLKMLERQAK----AGEIADNAAAKPL-------LATLLPKLTTRIVEWLE----- 91
Query: 245 IAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIG 304
+ + + AYAP L + A IT+ ++ L + + AA ++G
Sbjct: 92 ----EYASKKGRKPSAYAP-LQLLKPEASAFITLKVILASLTSTN---MTTIQAAAGMLG 143
Query: 305 DAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVR 364
AIE E R + + + K+ K+ E E+L K+ + KK + V
Sbjct: 144 KAIEDEARFGR-IRDLEAKHFKKHVE--------------EQLNKRHGQVYKKAFMQVVE 188
Query: 365 -----RIVKGQDDFKPWGQDARAKVGSRVIELLTQ-TAYIQSPADQLADAPPDIFPAFTH 418
R + G + + W ++ VG R+IE+L + T ++ +A D
Sbjct: 189 ADMIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHNAGNAGSD-----HE 243
Query: 419 ALRTVSKETKGGSKKYGVIE-CNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHF 477
AL+ + +K+ G + +P+ + P +VPP W G ++
Sbjct: 244 ALQLAQEYVDVLAKRAGALAGISPM---------------FQPCVVPPKPWVAITGGGYW 288
Query: 478 F---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRI-- 532
P ++RTH K + R + V++A++ NT W++N +VL+V++ I
Sbjct: 289 ANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNLAQNTAWKINKKVLAVVNEIVN 344
Query: 533 W-SCGGRLADLVDRNDVPLPEKPETED--EAQLRKWQWKVRNVKKENRERHSQRCDIELK 589
W +C +AD+ LP KP+ D EA L++W+ + + ++ R S+R +E
Sbjct: 345 WKNC--PVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLDKARVSRRISLEFM 402
Query: 590 LSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWL 649
L A K ++ ++P+N+D+RGR Y + P N G+D+ +G+L A+G+ +G+ G +WL
Sbjct: 403 LEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGEEGFYWL 461
Query: 650 KIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN 709
KIH AN GVDK+ R+AF E H+DDI A P+ WW + + PF LA C
Sbjct: 462 KIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPIN-NTWWAEQDSPFCFLAFCFE 518
Query: 710 LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIA 769
++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y +A
Sbjct: 519 YAGVTHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVA 576
Query: 770 ARVLVIIQRDA------------QRDPAVFPDALR-------AKLLLSQVDRKLVKQTVM 810
+V I+++DA +D + L+ + L V R + K++VM
Sbjct: 577 QKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQWLAYGVTRSVTKRSVM 636
Query: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQAARGI 866
T YG G R Q+ + + +F A+ Y AK+ A+ AA
Sbjct: 637 TLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWDAVSVTVVAAVEA 696
Query: 867 MSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRK----------LGRH 904
M+WL AK++A+E + V WTTP G PV Q YRK LG+
Sbjct: 697 MNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEYRKPLQKRLDMIFLGQF 756
Query: 905 TVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TFAGVH 962
++ ++ L + + +Q + PNFVHS DGSH+ MT V A K G+ +FA +H
Sbjct: 757 RLQPTINTL----KDSGIDAHKQESGIAPNFVHSQDGSHLRMTVVYAHEKYGIESFALIH 812
Query: 963 DSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV-------FPPLPERG 1015
DS+ T D ++ + +RE V YE ++L F F + PPLP++G
Sbjct: 813 DSFGTIPADAGKLFKAVRETMVITYEN---NDVLADFYSQFADQLHETQLDKMPPLPKKG 869
Query: 1016 DFDLREVLGSPYFF 1029
+ +L+++L S + F
Sbjct: 870 NLNLQDILKSDFAF 883
>sp|Q8L6J4|RPO1A_TOBAC DNA-directed RNA polymerase 1A (Fragment) OS=Nicotiana tabacum
GN=RPOT1-SYL PE=3 SV=2
Length = 155
Score = 293 bits (751), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 134/155 (86%), Positives = 146/155 (94%)
Query: 876 IIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNF 935
IIA EN PVRWTTPLGLPVVQPYRKLGRH +KTSLQILTLQRET+KVMVKRQRTAFPPNF
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 60
Query: 936 VHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENL 995
VHSLDGSHMMMTA+AC+++GL+FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PI ENL
Sbjct: 61 VHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENL 120
Query: 996 LDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1030
L+SFQ+SFP L FPPLPERGDFDLREVL SPYFFN
Sbjct: 121 LESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 155
>sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteria phage T7 GN=1 PE=1 SV=2
Length = 883
Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 252/915 (27%), Positives = 414/915 (45%), Gaps = 147/915 (16%)
Query: 184 MGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 243
MG ++R + RQ+K A E A N + L+ LP M + WFE ++
Sbjct: 46 MGEARFRKMFERQLK----AGEVADNAAAKPLITTL-------LPKMIARINDWFEEVK- 93
Query: 244 AIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACII 303
+ K A+ + ++ + +A IT+ + L T ++ + V +A I
Sbjct: 94 --------AKRGKRPTAFQ-FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA--I 141
Query: 304 GDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAV 363
G AIE E R + + + K+ KN E E+L K+V + KK + V
Sbjct: 142 GRAIEDEARFGR-IRDLEAKHFKKNVE--------------EQLNKRVGHVYKKAFMQVV 186
Query: 364 R-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADA------PPDI 412
+ + G + + W ++ VG R IE+L ++ + S Q A ++
Sbjct: 187 EADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIEL 246
Query: 413 FPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYD 472
P + A+ T + G S P+ + P +VPP WTG
Sbjct: 247 APEYAEAIATRAGALAGIS---------PM---------------FQPCVVPPKPWTGIT 282
Query: 473 KGAHFF---LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL 529
G ++ P ++RTH K + R + V++A++ NT W++N +VL+V
Sbjct: 283 GGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVA 338
Query: 530 DRI--WS-CGGRLADLVDRNDVPL-PEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCD 585
+ I W C ++R ++P+ PE + EA L W+ V ++++ R S+R
Sbjct: 339 NVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEA-LTAWKRAAAAVYRKDKARKSRRIS 397
Query: 586 IELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSG 645
+E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L A+G+ +GK G
Sbjct: 398 LEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLLTLAKGKPIGKEG 456
Query: 646 LHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLA 705
+WLKIH AN GVDK+ R+ F E + ++I A PLE WW + + PF LA
Sbjct: 457 YYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLA 513
Query: 706 VCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVY 765
C ++ +P+ DGSC+G+QH++A+ RD +G AVNL+ E D+Y
Sbjct: 514 FCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIY 571
Query: 766 SGIAARVLVIIQRDA----QRDPAVFPD---------------ALRAKLLLSQVDRKLVK 806
+A +V I+Q DA + D AL + L V R + K
Sbjct: 572 GIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTK 631
Query: 807 QTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFG----ASCYAAKVTLTALGEMFQA 862
++VMT YG G R Q+ + + +F A+ Y AK+ ++ A
Sbjct: 632 RSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 691
Query: 863 ARGIMSWLGECAKIIASENQ------------PVRWTTPLGLPVVQPYRKLGRHTVKTSL 910
A M+WL AK++A+E + V W TP G PV Q Y+K ++T L
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKK----PIQTRL 747
Query: 911 QILTLQR----------ETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACRKAGL-TF 958
++ L + + ++ +Q + PNFVHS DGSH+ T V A K G+ +F
Sbjct: 748 NLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESF 807
Query: 959 AGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFENLLDSFQKSFPKLVF---PPLPER 1014
A +HDS+ T D + + +RE V+ YE + + D F + P LP +
Sbjct: 808 ALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAK 867
Query: 1015 GDFDLREVLGSPYFF 1029
G+ +LR++L S + F
Sbjct: 868 GNLNLRDILESDFAF 882
>sp|P18147|RPOL_BPK11 DNA-directed RNA polymerase OS=Enterobacteria phage K11 GN=1 PE=3
SV=1
Length = 906
Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 213/759 (28%), Positives = 357/759 (47%), Gaps = 115/759 (15%)
Query: 345 EKLRKKVTDLIKKQKLPAVR-----RIVKGQDDFKPWGQDARAKVGSRVIELLTQ-TAYI 398
++L K+V + KK + V + + G D++ W D + VG++++ELL + T +
Sbjct: 188 DQLDKRVGHVYKKAFMQVVEADMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLV 247
Query: 399 QSPADQLADAPPDIF--------PAFTHALRTVSKETKGGSKKYGVIE-CNPLVLKGLER 449
+ +++AD D+ PAF L SK+ G + +P+
Sbjct: 248 EMTKNKMADGSDDVTSMQMVQLAPAFVELL----------SKRAGALAGISPM------- 290
Query: 450 TARHMVIPYMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGAKQQRDTVKRTPKKQLEP 506
+ P +VPP W G ++ + P ++RTH K ++R +
Sbjct: 291 --------HQPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYADVHMPE 338
Query: 507 VFEALDTLGNTKWRVNNRVLSVLDRI--WS-CGGRLADLVDRNDVPLPEKPETED--EAQ 561
V++A++ NT W+VN +VL+V++ I W C ++R + LP +P+ D E
Sbjct: 339 VYKAVNLAQNTPWKVNKKVLAVVNEIVNWKHCPVGDVPAIEREE--LPPRPDDIDTNEVA 396
Query: 562 LRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYL 621
+ W+ + V ++++ R S+RC E ++ A K + + ++P+N+D+RGR Y + +
Sbjct: 397 RKAWRKEAAAVYRKDKARQSRRCRCEFMVAQANKFANHKAIWFPYNMDWRGRVYAVSMF- 455
Query: 622 NHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF 681
N G+D+ +G L A+G+ +G G +WLKIH AN GVDK+ R+ F E + +I
Sbjct: 456 NPQGNDMTKGSLTLAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNIL 513
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYA 741
SA PL WW + + PF LA C + +P+ DGSC+G+QH++
Sbjct: 514 ASAADPL-NNTWWTQQDSPFCFLAFCFEYAGVKHHGL--NYNCSLPLAFDGSCSGIQHFS 570
Query: 742 ALGRDTLGAAAVNLVAREKPADVYSGIAARV------------LVIIQRDAQRDPAVFPD 789
A+ RD++G AVNL+ + D+Y +A +V ++++ A ++ F +
Sbjct: 571 AMLRDSIGGRAVNLLPSDTVQDIYKIVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHE 630
Query: 790 -------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELF 842
L A+ L V RK+ K++VMT YG R Q+ + E +F
Sbjct: 631 KVTLGESVLAAQWLQYGVTRKVTKRSVMTLAYGSKESLVRQQVLEDTIQPAIDNGEGLMF 690
Query: 843 G----ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQ------------PVRW 886
A+ Y AK+ A+ AA M+WL AK++A+E + + W
Sbjct: 691 THPNQAAGYMAKLIWDAVTVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHW 750
Query: 887 TTPLGLPVVQPYRK----------LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFV 936
TP G PV Q YRK LG+ VK + + ++ +Q + PNFV
Sbjct: 751 VTPDGFPVWQEYRKQNQARLKLVFLGQANVKMTYNT----GKDSEIDAHKQESGIAPNFV 806
Query: 937 HSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVELYE-MPIFE 993
HS DGSH+ MT V + G+ +FA +HDS T D + + +RE V+ YE +
Sbjct: 807 HSQDGSHLRMTVVHANEVYGIDSFALIHDSSGTIPADAGNLFKAVRETMVKTYEDNDVIA 866
Query: 994 NLLDSFQKSFPKLVF---PPLPERGDFDLREVLGSPYFF 1029
+ D F + P +P +GD +LR++L S + F
Sbjct: 867 DFYDQFADQLHESQLDKMPAVPAKGDLNLRDILESDFAF 905
>sp|P06221|RPOL_BPSP6 DNA-directed RNA polymerase OS=Enterobacteria phage SP6 PE=2 SV=1
Length = 874
Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 223/873 (25%), Positives = 374/873 (42%), Gaps = 134/873 (15%)
Query: 240 PLRDAIAKEQERCRMAKHKVAYAPYFDQ-LPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298
P+ + I +E K + A F Q + ++ A ITM +M +L T A +
Sbjct: 52 PMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDMLNTD-----ATLQA 106
Query: 299 AACIIGDAIEQEVRIHK-------FLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKV 351
A + + IE +VR K + EK KK + + N ++ + +K
Sbjct: 107 IAMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLKASRTKSYR-HAHNVAVVAEKSVAEKD 165
Query: 352 TDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPD 411
D D ++ W ++ + ++G+ ++E+L + +
Sbjct: 166 ADF----------------DRWEAWPKETQLQIGTTLLEILEGSVFYNGE---------- 199
Query: 412 IFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVI---PYMPMLVPPVKW 468
P F A+RT G K ++ + V + + H+ Y P ++PP W
Sbjct: 200 --PVFMRAMRTY------GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPW 251
Query: 469 -TGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLS 527
T ++ G H R K R+ V++ +KQ+ V++A++ L NT+W++N VL+
Sbjct: 252 RTPFNGGFH--TEKVASRIRLVKGNREHVRKLTQKQMPKVYKAINALQNTQWQINKDVLA 309
Query: 528 VLDRIWSCG-----GRLADLVDRNDVP---------------LPEKPETEDEAQLRKWQW 567
V++ + L+D+ + P L E E Q W+
Sbjct: 310 VIEEVIRLDLGYGVPSFKPLIDKENKPANPVPVEFQHLRGRELKEMLSPEQWQQFINWKG 369
Query: 568 KVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSD 627
+ + +R S+ + + ARK E Y+ + +D R R Y L+ +D
Sbjct: 370 ECARLYTAETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSND 429
Query: 628 LCRGILEFAEGRTL-GKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIF----- 681
L + +L F EGR + G L W I+ ANL+ G DK + + R++ N LD+ F
Sbjct: 430 LGKALLRFTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVS---NVLDEEFQDMCR 484
Query: 682 DSADKPLEGRRWWLKAEDPFQCLAVCINLTEALR---SSSPETFISHIPVHQDGSCNGLQ 738
D A PL +W KA+ P++ LA C + L + F +H+PVHQDGSC+G+Q
Sbjct: 485 DIAADPLTFTQW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQ 543
Query: 739 HYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA----QRDPAVFPD----- 789
HY+A+ RD +GA AVNL + P D+Y +A V+I+++A D F
Sbjct: 544 HYSAMLRDEVGAKAVNLKPSDAPQDIYGAVAQ---VVIKKNALYMDADDATTFTSGSVTL 600
Query: 790 ------ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQI-----------------K 826
A+ + + R L K+ VMT YG T + R+ + +
Sbjct: 601 SGTELRAMASAWDSIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAE 660
Query: 827 RRLKERGAPMEEAELFGASCYAAKVTLTAL-----GEMFQAARGIMSWLGECAKIIASEN 881
R + P E+ + AA +TAL E+ +A M + + A+ A N
Sbjct: 661 GRTANKVHPFEDDRQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRN 720
Query: 882 QPVRWTTPLGLPVVQPYRKLGRHTVKTSLQ---ILTLQRETEKVMVKRQRTAFPPNFVHS 938
+ + +T P G + Q V+T L ++LQ ET+ V A PNFVH
Sbjct: 721 EGLMYTLPTGFILEQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHG 780
Query: 939 LDGSHMMMTAVACRKAGLT-FAGVHDSYWTHACDVDEMNRILREKFVELY-EMPIFENLL 996
D SH+++T G+T A +HDS+ THA + + L+ + V +Y + + LL
Sbjct: 781 HDASHLILTVCELVDKGVTSIAVIHDSFGTHADNTLTLRVALKGQMVAMYIDGNALQKLL 840
Query: 997 DSFQKSFPKLVFPPLPERGDFDLREVLGSPYFF 1029
+ + + +PE+G+FDL E++ S Y F
Sbjct: 841 EEHEVRWMVDTGIEVPEQGEFDLNEIMDSEYVF 873
>sp|P33540|RPOP_NEUCS Probable DNA-directed RNA polymerase OS=Neurospora crassa PE=3 SV=1
Length = 896
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 157/580 (27%), Positives = 256/580 (44%), Gaps = 62/580 (10%)
Query: 444 LKGLERTARHMVIPYMPMLVPPVKWTGYDK------GAHFFLPSYVMRTHGAK--QQRDT 495
LK L M +PM++PP++W D G + +R K + D
Sbjct: 269 LKTLINNITLMDTIELPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDA 328
Query: 496 VKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPE 555
T K+L +A++ + +N ++L + R D+ D + K
Sbjct: 329 NDMTYNKEL---VDAVNFKSKIPYTINLKILDFITRDEFINR------DKKDNVIIYKHI 379
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKL-SVARKMKDEEGFYYPHNVDFRGRA 614
D A L ++ +N K H+ + + S+A+ MKD + FY +D+RGR
Sbjct: 380 HPDSALLGEYMKDRKNPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRF 439
Query: 615 YPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE 674
Y LN G +L R +L F EG+ L GL LKI+ AN A G+DK S E RL + E
Sbjct: 440 YTSSCALNIQGGELARSLLLFKEGQKLNDIGLKALKIYTAN--AFGLDKRSKEERLDWVE 497
Query: 675 NHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSC 734
+L I D ++ W +A++P LA + L + FISH+P+ D +C
Sbjct: 498 QNLHKIID-----IDNYEIWREADEPLLFLACALELKGY---NEDPNFISHLPILMDATC 549
Query: 735 NGLQHYAALGRDTLGAAAVNLVA---REKPADVYSGIAARVLVIIQRDAQRDPAVFPDAL 791
NGLQH +A+ D + A VNL+ + P D+YS + + Q
Sbjct: 550 NGLQHLSAMVNDFVLAEKVNLLKSTENDNPRDLYSEVIPHI-------KQEILEASKSYE 602
Query: 792 RAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG-----------------A 834
L V+R LVK+ +MT YG T G DQI + ++ A
Sbjct: 603 HTNLERINVERCLVKRGLMTITYGATERGIYDQIVSKFFQKDEWNKTVGLHFVCIDSDIA 662
Query: 835 PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
P + +K+ +L ++ +M + K++ + PV W TP GL +
Sbjct: 663 PKDVVFTQKNILLLSKIIYNSLFKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVI 722
Query: 895 VQPYRKLGRHTVKTSL-----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV 949
Q Y K ++ T + +++ + +T + ++Q AF PNFVHS+DGS++++
Sbjct: 723 QQKYNKFTKYNETTYVASKRYKLVLRKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLIN 782
Query: 950 ACRKAG--LTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
R G + FA +HD + THA D ++ +++ F+ +Y
Sbjct: 783 TIRDEGRKINFASIHDCFATHANDTAWLSWYVKQSFIRIY 822
>sp|P33539|RPOP_AGABT Probable DNA-directed RNA polymerase OS=Agaricus bitorquis PE=3 SV=1
Length = 1102
Score = 162 bits (411), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 151/587 (25%), Positives = 267/587 (45%), Gaps = 99/587 (16%)
Query: 450 TARHMVIPYMPMLVPPVKWTGYDKGAHF-FLPSYVMRTH--------GAKQQRDTVKRTP 500
T + I +PML P K + G +F ++ S H G RD + +
Sbjct: 468 TVSGINIVQLPMLTEPRKISS--DGLYFPYINSDTTNLHLFEGELIKGKYNLRDHTEAS- 524
Query: 501 KKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPE-----KPE 555
E ++ +++ L + K+++N +L+ + W D D L + KP
Sbjct: 525 ----EMLYSSINYLNSIKFKINKAMLNFILAEW----------DNKDSKLFKGYNMLKPI 570
Query: 556 TEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAY 615
E ++ + +K+E +S+ +S+A KD E FY P VDFRGR Y
Sbjct: 571 LETDS---------KEIKEEKVSSNSKYTLYSNIISLASLYKDNE-FYLPVYVDFRGRVY 620
Query: 616 PMHPYLNHLGSDLCRGILEFAEGR-TLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTE 674
P+ Y+++ G DL R ++ FA+ + L SG L ++LANL G DKL RL +
Sbjct: 621 PLSNYISYQGGDLARSLILFADTKCVLNNSGKECLNVYLANL--AGYDKLPWSERLTKVD 678
Query: 675 NHLDDIFDSAD----KPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQ 730
+ + +S + K +E K +PFQ +++ + L S+P+ IS+ P+
Sbjct: 679 GIIKEYLESNEISNTKYIEDN--IDKISEPFQFISIM--YAKLLSISNPKANISN-PILF 733
Query: 731 DGSCNGLQHYAALGRDTLGAAAVNLVA------REKPADVYSGIAARVLVIIQRDAQRDP 784
D SC+G+QH AAL + A+ VNL + P D Y+ ++ RD
Sbjct: 734 DASCSGIQHIAALTLEKELASNVNLYTDSSNPKEDYPQDFYTYALEKI---------RDK 784
Query: 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQ------IKRRLKER------ 832
+ D + + +++RK++K++VMT Y ++ G + +K LK R
Sbjct: 785 LINSDITELRDI--KLNRKIIKRSVMTIPYNISMAGIGEHLMEHFTVKTVLKYRYVVIPG 842
Query: 833 GAPMEEAEL------FGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRW 886
A + ++ +G C K+ L + + R + ++ I N P+ W
Sbjct: 843 SATISSKDVYLDYSKYGQLC---KIIYFVLTKELPSLRLLSNYFESMIDIFVKLNIPITW 899
Query: 887 TTPLGLPVVQPYRKLGRHTVKTSL----QILTLQRETEKVMVKRQRTAFPPNFVHSLDGS 942
TP GL + K VKTS+ +I T++ T+ + V + +F PNF+HSLD S
Sbjct: 900 VTPSGLKIKYTNIKFKPQKVKTSVLNTSKITTIKLPTDSLDVLSTKRSFMPNFIHSLDAS 959
Query: 943 --HMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 987
H+++ +V+ + L VHD + + A ++ ++ ++++ F+ +Y
Sbjct: 960 NVHLLLNSVSYK--NLPVYTVHDCFASTANNMFKLEKLVKNAFINIY 1004
>sp|P22372|RPOP_CLAPU Probable DNA-directed RNA polymerase OS=Claviceps purpurea PE=3
SV=1
Length = 936
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 153/667 (22%), Positives = 292/667 (43%), Gaps = 102/667 (15%)
Query: 371 DDFKPWGQDA-RAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKG 429
+D K + DA +G+++IE+L ++ + + D +H++ T+++E
Sbjct: 249 EDNKMFFDDAFYLHLGAKLIEILIESDLLALTLVKFKDE--------SHSVLTLTEEVAK 300
Query: 430 GSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLP-SYVMRTHG 488
I N +VL L+ +PM+V P ++ + G + Y+
Sbjct: 301 A------IPTNKVVLAPLK----------LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLT 344
Query: 489 AKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVL--DRIWSCGGRLADLVDRN 546
K + + R +K + ++E+++ + T +++N ++L L D ++S +L
Sbjct: 345 KKLNMNDISRIQEKNI--IYESINKMMATAFQINKKLLKYLLEDYVFSKLLKLEG----- 397
Query: 547 DVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELK----LSVARKMKDEEGF 602
D+ Q ++ N+ K + +++ Q +L + +A ++
Sbjct: 398 -----------DDLYKNITQIEIDNMDKRDNQKYQQYLSQKLLRDYIIDIATVFQNVPEL 446
Query: 603 YYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKS---GLHWLKIHLANLYAG 659
Y+P +D RGR YP+ Y ++ S+L + +L FA T+ +S + +LK + A +
Sbjct: 447 YFPLKLDHRGRLYPITAYFHYQSSELAKALLLFAIPDTIERSDSISIDYLKAYGATCFGN 506
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCIN---LTEALRS 716
+DK S++ RL + + + ++I + + L AE+ F LA C+ L + L
Sbjct: 507 KLDKKSYDKRLQWVDANWENIINYRNNVLLEL-----AENKFMFLAYCLEIERLNQFLND 561
Query: 717 SSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREK---PADVYSGIAAR-- 771
S E F +++P+ DG+CNG QH L + + +NL + K P+D YS + +
Sbjct: 562 DSIENFKTYLPLQLDGTCNGFQHIVLLSNEVKLYSQLNLDGKSKNQDPSDFYSFMINQLN 621
Query: 772 VLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYG------------VTYI 819
+ ++ ++D D R L+ + R +KQ +MT Y I
Sbjct: 622 IHLLNKKDVSTDKEDIESYDR--LINLGLSRANIKQAIMTKPYNAKDFTVAKYIIETLLI 679
Query: 820 GARDQIKRRLKERGAPMEEA------ELFGASCY-----AAKVTLTALGEMFQAARGIMS 868
+ D + + E+G E + +C+ AK L + + ++
Sbjct: 680 ASED---KYIDEKGITRTECWYKVNETMTNVACFRDIYLLAKCINEILFLNYPQIKSLLE 736
Query: 869 WLGECAKIIASENQPVRWTTPLGLPVVQPY--RKLGRHTVKTSLQILTLQRETEKVMVK- 925
+L ++I+ N P+ W+ P GL V Q Y KL + T L + T+K+ +
Sbjct: 737 YLNSISEIMLKLNLPITWSLPTGLEVHQQYMRSKLKKTKPYTYLDTSLTLKITDKIKMDK 796
Query: 926 -RQRTAFPPNFVHSLDGSHMMMTAVACRKA----GLTFAGVHDSYWTHACDVDEMNRILR 980
+Q+ A PN +HSLD + ++M A K+ + F VHD Y A +D + LR
Sbjct: 797 VKQQIALMPNLIHSLDAASLIMLYFAFNKSIGSGVVNFYSVHDCYGVTAKYIDLLISQLR 856
Query: 981 EKFVELY 987
++ELY
Sbjct: 857 AVYIELY 863
>sp|P33541|RPOP_NEUIN Probable DNA-directed RNA polymerase OS=Neurospora intermedia PE=3
SV=2
Length = 811
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 137/569 (24%), Positives = 240/569 (42%), Gaps = 89/569 (15%)
Query: 459 MPMLVPPVKWTGYDKGAHFFLPSYVMRTH---GAKQQRDTVKRTPKKQLEPVFEALDTLG 515
+PM+ PP+ W +G + + G+ R + T K ++ ++ L
Sbjct: 243 LPMVCPPLPWGHGIRGGNLINLTDTQDESLVVGSFHHRHKIAITDK-----LYNVINKLN 297
Query: 516 NTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKE 575
K+++N +LS L + G + D +N KK+
Sbjct: 298 AFKFKINGDLLSYLQ---NEGSFILDFY--------------------------KNTKKD 328
Query: 576 NRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEF 635
+ DI AR + FY N+D+RGR Y YL++ GS+L ++
Sbjct: 329 TYINNMITIDI------ARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSLALINL 381
Query: 636 AEGRTLGKSGLHWLKIHLANLY--AGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRW 693
EG+ L + GL + ++ AN+Y G K S + R + +LD+I + DK +
Sbjct: 382 FEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNII-AMDK-----EF 435
Query: 694 WLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAV 753
LKAE P A C+ + + + F P+ D +C+G+QH+AA+ D V
Sbjct: 436 ILKAESPTLFAAFCLTMRKLKENPDYPVF---NPIFLDATCSGVQHFAAMLLDLELGKYV 492
Query: 754 NLV-AREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTS 812
NL+ + E D YS + + I A++ F + + + ++R L+K+ +MT
Sbjct: 493 NLINSGESVNDFYSQLIPAINKAINESAEKK---FKNLKFSDI---SLNRSLLKKVIMTK 546
Query: 813 VYGVTYIGARDQIKRRLKE-------RG---------APMEEAELFGASCYAAKVTLTAL 856
Y VT G +Q+K +L++ +G P + + + + + +
Sbjct: 547 SYNVTTYGITEQLKSKLEKVEKIVISKGKEIKVYDYLVPTKNGDFVVLDTFEVETLASII 606
Query: 857 GE----MFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR--KLGRHTVKT-- 908
+ F I +L AKI + P+ W+TP GL + Q Y K+ + T+
Sbjct: 607 NDNIFNQFPKLHSIYDYLTRLAKIYLKLDIPLSWSTPDGLELTQRYNLSKVKKLTINFLG 666
Query: 909 SLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTH 968
+ L+ + +R+ A PN +HSLD SH+ M + L +H+ + TH
Sbjct: 667 KNRTAVLRSWVNEKDSRREVQAIIPNIIHSLDASHLTMIIDSWDSYILP---IHECFGTH 723
Query: 969 ACDVDEMNRILREKFVELYEMPIFENLLD 997
D+ ++ +RE F+ LY F N +D
Sbjct: 724 PNDMYKLAEQVRECFILLYSKNDFLNKID 752
>sp|O03685|RPOP_GELSP Probable DNA-directed RNA polymerase OS=Gelasinospora sp. (strain
G114) PE=3 SV=1
Length = 831
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/453 (25%), Positives = 201/453 (44%), Gaps = 47/453 (10%)
Query: 602 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLY--AG 659
FY N+D+RGR Y YL + GS+L ++ EG+ L + GL + ++ AN+Y G
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 660 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 719
K S + R + +LD+I + DK + LKAE P A C+ + + +
Sbjct: 428 KFSKKSFQDRFNWVVENLDNII-AMDKD-----FILKAESPTLFAAFCLTMRKLKENPDH 481
Query: 720 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLV-AREKPADVYSGIAARVLVIIQR 778
F P+ D +C+G+QH+AA+ D VNL+ + E D YS + + I
Sbjct: 482 PVF---NPIFLDATCSGVQHFAAMLLDLELGKYVNLINSGESVNDFYSQLIPAINKAINE 538
Query: 779 DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE------- 831
A++ K ++R L+K+ +MT Y VT G +Q+K +L++
Sbjct: 539 SAEKKLK------NVKFSDISLNRSLLKKVIMTKSYNVTTYGITEQLKSKLEKVEKIIIS 592
Query: 832 RG---------APMEEAELFGASCYAAKVTLTALGE----MFQAARGIMSWLGECAKIIA 878
+G P + + + + + + + F I +L KI
Sbjct: 593 KGKEIKVYDYLVPTKNGKFVVLDTFEVETLASIINDNIFNQFPKLHSIYEYLTRLTKIYL 652
Query: 879 SENQPVRWTTPLGLPVVQPYR--KLGRHTVKT--SLQILTLQRETEKVMVKRQRTAFPPN 934
+ P+ +TP GL + Q Y K+ + T+ + L+ +R+ A PN
Sbjct: 653 KLDIPISCSTPDGLELTQRYNLSKVQKLTINFLGKNRTAVLRSWVSDKDSRREVPAIIPN 712
Query: 935 FVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFEN 994
+HSLD +H+ M + L +HD + TH D+ ++ +RE F+ LY F +
Sbjct: 713 IIHSLDAAHLPMLIDSWDSYILP---IHDCFGTHPNDMFKLAEQVRECFILLYSKNDFLS 769
Query: 995 LLDS-FQKSFPKLVFPPLPERGDFDLREVLGSP 1026
+DS F+++ + + G+ D ++ G+P
Sbjct: 770 KIDSKFRENLKDYKIEIVNKNGE-DFVKIKGTP 801
>sp|Q01521|RPOP_PODAS Probable DNA-directed RNA polymerase OS=Podospora anserina PE=3
SV=1
Length = 948
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 134/584 (22%), Positives = 253/584 (43%), Gaps = 70/584 (11%)
Query: 443 VLKGLERTARHMVIPY-MPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPK 501
+LK L V+P +PM+V P +T G + Y+ + K++ + T
Sbjct: 325 ILKVLPEDGTLFVLPKKIPMIVKPKPYTTRVNGGYLSNDLYI-NENIVKEKWNLRDNTQI 383
Query: 502 KQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQ 561
+F+ ++ L + +++N VL ++ ++ +L+D P P +
Sbjct: 384 LHFNQIFDLVNNLSSIGYKINTDVLDFIE-LYGSDYFKNELID----PRYSHPLLKKSKL 438
Query: 562 LRKWQWKVRNV--KKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHP 619
+K + ++ + KKE +E L +A ++ F+ P N DFRGR Y
Sbjct: 439 TKKEKMELDSFLAKKELQEN---------ILGLAEIFRNIPEFFIPVNADFRGRVYCTPE 489
Query: 620 YLNHLGSDLCRGILEFAE-GRTLGKS--GLHWLKIHLANLYAGGVDKLSHEGRLAFTENH 676
YLN+ +DL + +L F++ GR K L +LKI+ + + G+DKLS R+ + + +
Sbjct: 490 YLNYQSTDLAKSLLLFSKPGRMYKKDYIALSYLKIYGGS--SFGLDKLSANDRIKWVDKN 547
Query: 677 LDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLT---EALRSSSPETFISHIPVHQDGS 733
L++I K + +A++ F LA CI L + F +++P+ D +
Sbjct: 548 LNNI-----KNYRNGKLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQMDAT 602
Query: 734 CNGLQHYAALGRDTLGAAAVNLVAR---EKPADVYSGIAARVLVIIQRDAQRDPAVFPDA 790
CNG QH + L D+ + +NL + P D Y+ + + ++ + + + P
Sbjct: 603 CNGFQHLSLLSLDSNLSKELNLSESTWDDVPKDFYTFLVVCFIDYLKTELLENKNLTPKE 662
Query: 791 LRA--KLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAEL------F 842
+ +L+ ++ R+++K+ +MT Y V+ + I+ G +E+ L
Sbjct: 663 SESYNRLINMKIIREIIKKGIMTIPYNVSNFSLINYIR-----EGFELEDNSLEWYIYKN 717
Query: 843 GASCYAAKVTLTALG--------EMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894
S + T LG E F ++ +L + A++ P+ WT P GL V
Sbjct: 718 EPSIRLKSLDFTVLGKGLRKVLHEKFHKLDLLLKYLDQVARVCTLLEIPIIWTLPTGLVV 777
Query: 895 VQPY--------RKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMM 946
Q Y + K S+++L + +Q TAF PN VHSLD + + +
Sbjct: 778 RQSYMIRDEVRIKPFNHSNKKFSMKVLNKTQFNN----SKQITAFMPNLVHSLDAASLTL 833
Query: 947 TAVACRKAGL---TFAGVHDSYWTHACDVDEMNRILREKFVELY 987
K + +HD + A ++ + +L+ +++LY
Sbjct: 834 LLDFYFKESIDVKNIYTIHDCFAVPANKMECLISLLKLTYIKLY 877
>sp|P10581|RPOP_MAIZE Probable DNA-directed RNA polymerase OS=Zea mays PE=3 SV=1
Length = 1098
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 102/510 (20%), Positives = 195/510 (38%), Gaps = 64/510 (12%)
Query: 505 EPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRK 564
+PV A+ L +R+N V + + WS + L +N K + L
Sbjct: 427 QPVLSAVKKLQWQPYRINKLVYDFIQKHWSVLVSVGLLRPKNLALFKRKEALRLLSSLLF 486
Query: 565 WQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGF-----YYPHNVDFRGRAYPMHP 619
++ + + + + +I MK E + Y+P +DFRGR Y P
Sbjct: 487 KHEELSTIYRYSELKSVLLKNIHASTFELYTMKIAEAYLDYKIYFPIFLDFRGRNYRHGP 546
Query: 620 YLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLAN--LYAGGVDKLSHEGRLAFTENHL 677
+ H DL R ++ F E S H + + + L+ + H+ + L
Sbjct: 547 FHFH-ERDLVRSLIIFDES---DDSAAHTINSDVGDRILHNFLISAAYHKSKFGVYREAL 602
Query: 678 DDIFDSADKPLEGRRWW--------LKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729
+ I++ + ++ L PFQ ++ CI+L + + + + + PV
Sbjct: 603 EFIYNKIEDMQSKPTFFEKDIFVDTLCCRHPFQYISSCISL-KTYADTKDLSVLRYTPVF 661
Query: 730 QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPA-----DVYS---GIAARVLVIIQRDAQ 781
QD S + Q + D NL+ + D+Y G + L+ ++
Sbjct: 662 QDASASAYQIMSYFLLDIDYGIHTNLLKKTNTDGRYIRDIYEFMWGCLIKYLIAEEKIEL 721
Query: 782 RDPAVFPDALRAKLLLSQV----DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPME 837
+ P+ + +L+++ DR +VK+ M +YG T + ++ LK + + E
Sbjct: 722 AIKLLTPNEKDQESVLAKIVSIFDRNVVKKMFMPMMYGKTDYTLKKDVEDLLKGK-SDSE 780
Query: 838 EAELFG--ASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVV 895
L S Y KV + ++ + SW G A +++PV ++TP + +
Sbjct: 781 GINLISKHISTY-WKVNFGKMKDLMDLINYV-SWFG------AGQDKPVVYSTPYWV-TL 831
Query: 896 QPYRKLGRHTVKTSLQILTLQRETEKVM--------------VKRQRTAFPPNFVHSLDG 941
Q Y+ R VK +Q T + ++V +++ T+ NF+H D
Sbjct: 832 QTYK--WRKRVKMKIQYETTKNNEKEVKTTSAKMLIPLNDNDIRKSSTSTFANFIHQKDA 889
Query: 942 SHMMMTAVACRK----AGLTFAGVHDSYWT 967
+ K + + VHD++ T
Sbjct: 890 FTAIQLVDFINKLENASSIPIYAVHDNFIT 919
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 131 GYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMG 185
G +A A+ TD+E + V++I+ ++ M K+EQ E +G R+R+A G G
Sbjct: 347 GLGNMASALKDTDLESSLE-VKKIKAMVNSMTKKEQENPEILNGSRRKRIALGSG 400
>sp|P81138|CAT1_PENJA Catalase OS=Penicillium janthinellum PE=1 SV=1
Length = 696
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 55 AISLHLKKPFSRAYSFLGIS-------QDSILRDKVKFVCLDMVP-RGIHEVGSGRIGEI 106
AIS+ + Y LG + QD + + + + VP R +H G+G G
Sbjct: 15 AISMGRGVALGKTYGTLGAASRGATLLQDLLFTEIIFAFDRERVPERAVHARGTGAHGTF 74
Query: 107 LNHEDYMGRTSFGVLKNDNFWCPR--GYATVAEAVSSTDVEEDV 148
L++ED+ T+ L + + P ++TV+ A S D DV
Sbjct: 75 LSYEDWSNLTAASFLSAEGKFTPEMTRFSTVSGARGSADTARDV 118
>sp|Q95JR0|CAGE1_MACFA Cancer-associated gene 1 protein homolog OS=Macaca fascicularis
GN=CAGE1 PE=2 SV=1
Length = 840
Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 313 IHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDD 372
+ ++LE K T +K++EE + EQEK+ DL+K++K + + Q++
Sbjct: 435 VSQYLEMDK----TLSKKEEEVKRLQQLRKEQEKVTASALDLLKREKETQEQEFLSLQEE 490
Query: 373 FKPWGQ---DARAKVGSRVIELLTQTAYIQ 399
F+ + + R K+ SR+ +LLTQ +Q
Sbjct: 491 FQKRDKANLEERQKLKSRLEKLLTQVKNLQ 520
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,053,720
Number of Sequences: 539616
Number of extensions: 17470534
Number of successful extensions: 60795
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 60421
Number of HSP's gapped (non-prelim): 212
length of query: 1030
length of database: 191,569,459
effective HSP length: 128
effective length of query: 902
effective length of database: 122,498,611
effective search space: 110493747122
effective search space used: 110493747122
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)