Query 036741
Match_columns 1030
No_of_seqs 248 out of 444
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1msw_D DNA-directed RNA polyme 100.0 3E-205 9E-210 1856.0 56.3 795 186-1030 25-883 (883)
2 3spa_A Mtrpol, DNA-directed RN 100.0 2E-195 6E-200 1769.3 59.3 791 181-1030 292-1134(1134)
3 3q23_A Virion RNA polymerase; 97.7 0.00022 7.5E-09 85.8 14.0 303 505-826 338-702 (1118)
4 4dfk_A DNA polymerase I, therm 74.5 1.8 6.1E-05 51.4 3.9 197 726-985 313-517 (540)
5 2kfn_A Klenow fragment of DNA 67.7 9.7 0.00033 45.6 8.2 210 709-986 365-584 (605)
6 3pv8_A DNA polymerase I; DNA p 58.4 5.3 0.00018 47.9 3.5 198 726-986 364-571 (592)
7 1bgx_T TAQ DNA polymerase; DNA 45.2 12 0.00042 46.6 3.9 197 726-985 605-809 (832)
8 1x9m_A DNA polymerase; DNA plo 26.5 54 0.0018 39.9 5.2 92 726-866 464-559 (698)
9 3iyk_A VP5; icosahedral virus; 21.7 4.8E+02 0.016 30.6 11.3 67 150-216 91-163 (526)
10 3okq_A BUD site selection prot 19.1 6.6E+02 0.023 24.7 10.4 69 149-220 28-97 (141)
No 1
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=100.00 E-value=2.5e-205 Score=1856.04 Aligned_cols=795 Identities=28% Similarity=0.488 Sum_probs=689.5
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccc
Q 036741 186 SGKYR-MLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR-MAKHKVAYAP 263 (1030)
Q Consensus 186 ~~~~~-~l~~RQ~~lE~~~~~~a~~~~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~l~~~I~~e~~~~~-~~~~r~~y~p 263 (1030)
...|+ .|++||++||++++++|++||++.+++++++|+++++|++++|+.+|+++|+++|+++++..+ +.+.++.|+|
T Consensus 25 ~~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~~~~~ 104 (883)
T 1msw_D 25 ADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQ 104 (883)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHH
Confidence 34455 578999999999999999999999999999999999999999999999999999999988776 3567899999
Q ss_pred ccccCCchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccCCCcchhhHH
Q 036741 264 YFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTE 343 (1030)
Q Consensus 264 ~L~~L~pe~lA~Iti~~~l~~~~~~~~~~~~~v~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 343 (1030)
||++|+||++|+|||+++|+++++ .+++++++++.+||++||+|++++++.++.++++... .
T Consensus 105 ~L~~l~~e~lA~iti~~~l~~~~~---~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~~---------------~ 166 (883)
T 1msw_D 105 FLQEIKPEAVAYITIKTTLACLTS---ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKN---------------V 166 (883)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHH---CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHH---------------T
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcc---cCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------------H
Confidence 999999999999999999999987 3567899999999999999999999987766433210 1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHh-hC----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCCccCceE
Q 036741 344 QEKLRKKVTDLIKKQKLPAVRRIV-KG----QDDFKPWGQDARAKVGSRVIELLTQT-AYIQSPADQLADAPPDIFPAFT 417 (1030)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~W~~~~~~kvG~~Li~~l~~~-~~i~~~~~~~~~~~~~~~paF~ 417 (1030)
.+.++++.+...++...+.+.+.. .. .+++.+|+..++++||++|+++|+++ +.++++..
T Consensus 167 ~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~-------------- 232 (883)
T 1msw_D 167 EEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ-------------- 232 (883)
T ss_dssp SHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC--------------
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceecc--------------
Confidence 122333333223333333333321 21 36789999999999999999999996 56544321
Q ss_pred eeEeeeecccCCCCeeEEEEEeCHHHHHHHHhhh---hccCCCCCCeeeCCcCcccCCCcccccc---CcceeecCChhh
Q 036741 418 HALRTVSKETKGGSKKYGVIECNPLVLKGLERTA---RHMVIPYMPMLVPPVKWTGYDKGAHFFL---PSYVMRTHGAKQ 491 (1030)
Q Consensus 418 h~~~~~~~~~~~~~k~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYL~~---~s~l~R~~~~~~ 491 (1030)
..+..++++|+|++||++++.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|++.
T Consensus 233 --------~~~~~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~--- 301 (883)
T 1msw_D 233 --------NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS--- 301 (883)
T ss_dssp ----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS---
T ss_pred --------ccCCCCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccC---
Confidence 11223578999999999999998643 2344569999999999999999999974 335667653
Q ss_pred hHHHHhcCCCCChhHHHHHHHhhcCcccEecHHHHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCCCc--cHHHHHHHHHH
Q 036741 492 QRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS-CGGRLADLVDRNDVPLPEKPETE--DEAQLRKWQWK 568 (1030)
Q Consensus 492 q~~~l~~~~~~~l~~v~~aLN~Lqst~w~IN~~VL~vi~~~w~-~g~~i~~l~~~~~~plP~~p~~~--d~~~~~~wk~~ 568 (1030)
+.++++..+++++.||++||+||+|||+||++||+||+++|+ +|+++++||+..+.|+|++|++. +++++++|+++
T Consensus 302 -~~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~k~~ 380 (883)
T 1msw_D 302 -KKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRA 380 (883)
T ss_dssp -TTHHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHH
T ss_pred -HHHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHHHhhcCCcccCCCCcCcCCCCCCCCccccCHHHHHHHHHH
Confidence 344555677899999999999999999999999999999999 99999999998889999998754 36789999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhhcCCCceeeccccCCCCcccCCCCCCCCCCchhhhhhhhcccCcccCccchHH
Q 036741 569 VRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHW 648 (1030)
Q Consensus 569 ~~~~~~~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLg~~Gl~W 648 (1030)
++++++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++||+|
T Consensus 381 ~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~Gl~W 459 (883)
T 1msw_D 381 AAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYW 459 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecccCCCCcCCCCC-CCCCCcchHHHHHHHhccCCccChhHHHH
Confidence 99999999999999999999999999999988999999999999999995 99999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHhhHHHHHHhhcCCCCcchhhhcCCChHHHHHHHHHHHHHHhcCCCCcccccccc
Q 036741 649 LKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPV 728 (1030)
Q Consensus 649 LkIhlAN~~g~G~DK~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~PwQfLA~C~El~~a~~~~~P~~y~S~lPV 728 (1030)
||||+||+| |+||+||+||++||++|+++|++||+|||+ .+||++||+||||||+|+||++|+++|+ +|+||+||
T Consensus 460 LkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~lPV 534 (883)
T 1msw_D 460 LKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLPL 534 (883)
T ss_dssp HHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEECCCE
T ss_pred HHHHHHHhc--CCCcCCHHHHHHHHHHHHHHHHHHhcCccc-chHHHcCCcHHHHHHHHHHHHHHHhCCC--cccccccc
Confidence 999999999 899999999999999999999999999998 5899999999999999999999999886 89999999
Q ss_pred cccCCCchhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCCCC-------C------------ch
Q 036741 729 HQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAV-------F------------PD 789 (1030)
Q Consensus 729 ~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~~~-------~------------~~ 789 (1030)
||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|+.++.+. . ..
T Consensus 535 hqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~~~~ 614 (883)
T 1msw_D 535 AFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTK 614 (883)
T ss_dssp EEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHH
T ss_pred ccCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhcccchh
Confidence 9999999999999999999999999999999999999999999999999998765321 0 11
Q ss_pred HHHHHHhhccCccccccccceeeecccchhhHHHHHHHHHhhcCCCCchhh----hhhhhhHHHHHHHHHHHHHHHhHHH
Q 036741 790 ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE----LFGASCYAAKVTLTALGEMFQAARG 865 (1030)
Q Consensus 790 ~~~Ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~----~~~~a~ylak~i~~ai~e~f~~A~~ 865 (1030)
...+++|.++|+||+|||||||+|||||++|+++||+++|+++++..++.. ...+|+|+|++||+||+++|++|+.
T Consensus 615 ~l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~~ 694 (883)
T 1msw_D 615 ALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVE 694 (883)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhcCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234678899999999999999999999999999999999987432111111 2378999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC------------CCcEEEEcCCCCeEEEeeccCcceEEEeeeEEEE---EecCC---CcCCHHhh
Q 036741 866 IMSWLGECAKIIASE------------NQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILT---LQRET---EKVMVKRQ 927 (1030)
Q Consensus 866 im~WL~~~A~~i~~~------------~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~---l~~~~---d~vd~rKq 927 (1030)
||+||++||++|+++ +.||.|+||+||||+|||++.++++|+|.+|.++ +..++ +++|++||
T Consensus 695 im~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~t~l~~~~~i~l~~~~~~~~~~d~~Kq 774 (883)
T 1msw_D 695 AMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQ 774 (883)
T ss_dssp HHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCeEEEECCCCCEEEEEecCCCceEEEEeecceeeEeeecccccccccchHHH
Confidence 999999999999998 9999999999999999999999999999998642 33333 35999999
Q ss_pred hccCCCcchhhhhhHHHHHHHHHHHHc-CC-cEEEeeccccCCCCChhHHHHHHHHHHHHhcCc-chHHHHHHHHHHhCC
Q 036741 928 RTAFPPNFVHSLDGSHMMMTAVACRKA-GL-TFAGVHDSYWTHACDVDEMNRILREKFVELYEM-PIFENLLDSFQKSFP 1004 (1030)
Q Consensus 928 ~~af~PNFIHSLDAsHmmlta~~~~~~-gi-~fa~VHDSFwTha~dvd~m~~ilRe~FV~Lys~-~il~~l~e~f~~~~~ 1004 (1030)
++|||||||||||||||||||++|.+. |+ +|++|||||||||||||.|+++|||+||+||++ |+|++|.++|..+|+
T Consensus 775 ~~af~PNFIHSLDAsHmmlta~~~~~~~gl~~fa~VHDsfwTha~dvd~m~~~lRe~FV~lys~~~~L~~l~~~~~~~~~ 854 (883)
T 1msw_D 775 ESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLH 854 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTT
T ss_pred hcCCCchhHhhHHHHHHHHHHHHHHHhcCCCceEEEeccccCCHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999998 99 799999999999999999999999999999999 999999999999998
Q ss_pred C---CCCCCCCCCCCCCcccccCCCCCCC
Q 036741 1005 K---LVFPPLPERGDFDLREVLGSPYFFN 1030 (1030)
Q Consensus 1005 ~---~~~p~~P~~G~LDL~~Vl~S~YFF~ 1030 (1030)
. ..||++|++|+|||++|++|+|||+
T Consensus 855 ~~~~~~~p~~P~~G~ldl~~Vl~S~YfFs 883 (883)
T 1msw_D 855 ESQLDKMPALPAKGNLNLRDILESDFAFA 883 (883)
T ss_dssp CTTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred hhhhhcCCCCCCCCCCCHHHHhcCCCCCC
Confidence 5 5899999999999999999999997
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-195 Score=1769.26 Aligned_cols=791 Identities=37% Similarity=0.635 Sum_probs=642.7
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHH
Q 036741 181 ARGMGSGKYRMLKMRQVKIETEAW------------EKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKE 248 (1030)
Q Consensus 181 ~~~~~~~~~~~l~~RQ~~lE~~~~------------~~a~~~~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~l~~~I~~e 248 (1030)
..+++....+.+.+.|+.+|..+. +..+..+|+.+ .++..+|...|..+|+++
T Consensus 292 k~~~~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~r~~l---------------~~~~~~w~~~l~~~~~~~ 356 (1134)
T 3spa_A 292 KLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTL---------------KTLRDQWEKALCRALRET 356 (1134)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHcCeeEEeecccCCCCCHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 456788899999999999997632 12233455544 567789999999999987
Q ss_pred HHHHH--hcccccccccccccCCchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036741 249 QERCR--MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNET 326 (1030)
Q Consensus 249 ~~~~~--~~~~r~~y~p~L~~L~pe~lA~Iti~~~l~~~~~~~~~~~~~v~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~ 326 (1030)
..... ....+..++|||+.||.+.++.|.|.++..+. .+ |..++.++..||..|++++.+++-.....
T Consensus 357 ~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~l~-~~----g~~~~~~~~~lg~~~~~~~~~~~~~~~~~----- 426 (1134)
T 3spa_A 357 KNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALP-AQ----GESFTTLARELSARTFSRHVVQRQRVSGQ----- 426 (1134)
T ss_dssp HHHHHHHHHTTCCCSTGGGGSSCHHHHHHHHHHHHHHCC-TT----CEEHHHHHHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred HHHHHHhhccCCCccccceeeCCHHHHHHHHHHHHHHhc-cc----CccHHHHHHHHHHHHHHHHHHHHHHhhhH-----
Confidence 66443 25568899999999999999997777666543 33 24678899999999999998764322111
Q ss_pred cCcccccCCCcchhhHHHHHHHHHHHH---HHHh--h------chHHHHHHhhCC-CCCCCCCHHHHHHHHHHHHHHHHH
Q 036741 327 KNKEDEEGDESNTVTTEQEKLRKKVTD---LIKK--Q------KLPAVRRIVKGQ-DDFKPWGQDARAKVGSRVIELLTQ 394 (1030)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~------~~~~~~~~~~~~-~~~~~W~~~~~~kvG~~Li~~l~~ 394 (1030)
.+.+.+.... ++.. + -.+.|+.+.... ..+.+|+..++++||++|+++|++
T Consensus 427 -----------------~~~~~~~y~~y~~~~~~~~~~~~~~~~r~~w~~l~~~~~~~~~~W~~~~~~kvG~~Ll~~L~~ 489 (1134)
T 3spa_A 427 -----------------VQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQ 489 (1134)
T ss_dssp -----------------HHHHHHHHHHHGGGTCSSCCCSSCCCHHHHHHHHHCCCCGGGCCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhCCcccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0111111111 0000 0 012344333322 357899999999999999999999
Q ss_pred HccccCCCCCCCCCCCCccCceEeeEeeeecccCCCCeeEEEEEeCHHHHHHHHhhhhc---cCCCCCCeeeCCcCcccC
Q 036741 395 TAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARH---MVIPYMPMLVPPVKWTGY 471 (1030)
Q Consensus 395 ~~~i~~~~~~~~~~~~~~~paF~h~~~~~~~~~~~~~k~~gvi~~~~~~~~~l~~~~~~---~~~~~lPMlvpP~pW~~~ 471 (1030)
+++|.+...+ +++....+|||+|.|++ ++++++|+|++||.+.+.+++.... +.+.+|||||||+||+++
T Consensus 490 ~~~i~~~~~~-~~~~~~~~paf~h~y~~------~~~~~~G~i~~hp~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~ 562 (1134)
T 3spa_A 490 ATQMPCSLDK-PHRSSRLVPVLYHVYSF------RNVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSP 562 (1134)
T ss_dssp HCBCCC------------CBSEEEEEC----------CCCEEEEECHHHHHHHHHHTCSEEEEEGGGSCBSSCCEEEEET
T ss_pred hccCCccccC-CCCCcccccceEEEEEE------EcCcEEEEEEECHHHHHHHHhccccccccCcCCCCcccCCCCCCCC
Confidence 9999875443 23446789999999975 3578999999999999999876443 223599999999999999
Q ss_pred CCccccccCcceeecCChh-hhHHHHhcCCCCChhHHHHHHHhhcCcccEecHHHHHHHHHHHHc-CCCCCCCCCCC-CC
Q 036741 472 DKGAHFFLPSYVMRTHGAK-QQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSC-GGRLADLVDRN-DV 548 (1030)
Q Consensus 472 ~~GGYL~~~s~l~R~~~~~-~q~~~l~~~~~~~l~~v~~aLN~Lqst~w~IN~~VL~vi~~~w~~-g~~i~~l~~~~-~~ 548 (1030)
++||||..++.+||+++.. ++...+++..+++|+.||++||+||+|||+||++||+|+.++|++ |+++.+||+.. +.
T Consensus 563 ~~GGYl~~~t~~mR~~~~~~q~~~~l~~~~~~~l~~v~~aLN~Lg~t~W~IN~~VLdVv~~vw~~~G~~~~~iP~~~~~~ 642 (1134)
T 3spa_A 563 HSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 642 (1134)
T ss_dssp TEEESSSSCCCSBCCCTTHHHHHHHHHSSCGGGGHHHHHHHHHHHTCEEEECHHHHHHHHHHHTTTCBGGGTBCCCC---
T ss_pred CCceeEecCcceeecCCChHHHHHHHHhccccccHHHHHHHHHHhCCCcEecHHHHHHHHHHHHhcCCCcCCCCCCcccc
Confidence 9999999999999997554 444556666778999999999999999999999999999999986 55678888753 34
Q ss_pred CCCC---CCCCccHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCCCceeeccccCCCCcccCCCCCCCCCC
Q 036741 549 PLPE---KPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLG 625 (1030)
Q Consensus 549 plP~---~p~~~d~~~~~~wk~~~~~~~~~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qG 625 (1030)
|.|+ .|.+.++++.++|++++++.++.++++||+||+++++|+||++|+|+ .||||||+|||||+||+||||||||
T Consensus 643 p~~p~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~S~Rc~~~~kL~iA~~f~~~-~fYfPhnlDFRGR~Yp~~p~LnhqG 721 (1134)
T 3spa_A 643 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDR-VFWLPHNMDFRGRTYPCPPHFNHLG 721 (1134)
T ss_dssp -------------------------------CTHHHHHHHHHHHHHHHHHHTTS-CEECCEEECTTCCEEESCSSSCSCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-eeecccccCCCCcCcCCCCCcCccc
Confidence 4443 23445677889999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred chhhhhhhhcccCcccCccchHHHHHHHHHhhcCCCCC-CCHHHHHHHHHhhHHHHHHhhcCCCCcchhhhcCCChHHHH
Q 036741 626 SDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDK-LSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCL 704 (1030)
Q Consensus 626 sDl~RsLL~FaegkpLg~~Gl~WLkIhlAN~~g~G~DK-~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~PwQfL 704 (1030)
+|+|||||+||+|+|||++|++|||||+||+| |+|| .||+||++|+++|+++|++||+|||+|.+||++||+|||||
T Consensus 722 sDl~RsLL~FaegkpLG~~Gl~WLkIhlAN~~--G~dKk~s~~eRi~wv~~n~~~I~dsA~~Pl~g~~wW~~Ad~PwQfL 799 (1134)
T 3spa_A 722 SDVARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTL 799 (1134)
T ss_dssp SHHHHHTEEESSCEECTTTHHHHHHHHHHHHH--SCCTTSCHHHHHHHHHHHHHHHHHHHHCTTTSCCGGGGSSSHHHHH
T ss_pred chHHHHHHHhccCCcCCcchHHHHHHHHHHhc--CCCcCCCHHHHHHHHHHHHHHHHHHHhCcccchhHHHhCCCHHHHH
Confidence 99999999999999999999999999999999 8998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccccccccccCCCchhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCC
Q 036741 705 AVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDP 784 (1030)
Q Consensus 705 A~C~El~~a~~~~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~ 784 (1030)
|+|+||++|++++||++|+||+||||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|++++.
T Consensus 800 A~C~El~~a~~~~dp~~y~S~lPVhqDGSCNGLQHyAALgrD~~Ga~~VNL~psd~PqDvYs~Va~~V~~~~~~Da~~~~ 879 (1134)
T 3spa_A 800 ACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGM 879 (1134)
T ss_dssp HHHHHHHHHHTSSSGGGCEECCEEEECCSSHHHHHHHHHTTCHHHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCccccccCccccCCCCcHHHHHHHHccChhhHHHhCCCCCCCcccHHHHHHHHHHHHHHhhhhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCchHHHHHHhhccCccccccccceeeecccchhhHHHHHHHHHhhcCCCCchhhhhhhhhHHHHHHHHHHHHHHHhHH
Q 036741 785 AVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAAR 864 (1030)
Q Consensus 785 ~~~~~~~~Ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~ylak~i~~ai~e~f~~A~ 864 (1030)
.+|++|.+.||||+|||||||+|||||++|+++||.++|++.+.++++ .++.+|+|+|++||+||+++|++|+
T Consensus 880 ------~~a~~l~~~I~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~e~~~~~~~-~~~~~a~Yla~~i~~si~e~f~~a~ 952 (1134)
T 3spa_A 880 ------RVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQEMFSGTR 952 (1134)
T ss_dssp ------HHHHHTTTCCCHHHHHHHHHHHHHCCSSSHHHHHHHHHHHTCTTSCTT-THHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ------HHHHHhhCCCChhhcccceEEeeecceehhHHHHHHHHHHhcccCchH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999997666653 6788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEcCCCCeEEEeeccCcce-EEEeeeEEEEEecCCC---cCCHHhhhccCCCcchhhhh
Q 036741 865 GIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRH-TVKTSLQILTLQRETE---KVMVKRQRTAFPPNFVHSLD 940 (1030)
Q Consensus 865 ~im~WL~~~A~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~-~I~t~lq~~~l~~~~d---~vd~rKq~~af~PNFIHSLD 940 (1030)
.||+||++||++|++++.||.|+||+||||+|||++..+. .|.|.+|.+++..+++ ++|++||++|||||||||||
T Consensus 953 ~im~WL~~~A~~i~~~~~pV~WtTPlGlpVvQpY~k~~k~~~i~~~~q~v~~~~~~d~~~~~d~~KQ~~afpPNFIHSLD 1032 (1134)
T 3spa_A 953 AIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLD 1032 (1134)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEECTTSCEEECCCBCC-----------------------CBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCEEEEeccCCCceeEecCCceEEEEeccCCcccCCCHHHHhccCCchHHhhHH
Confidence 9999999999999999999999999999999999997655 7889999999887654 69999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCcEEEeeccccCCCCChhHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCC------------C
Q 036741 941 GSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPIFENLLDSFQKSFPKLV------------F 1008 (1030)
Q Consensus 941 AsHmmlta~~~~~~gi~fa~VHDSFwTha~dvd~m~~ilRe~FV~Lys~~il~~l~e~f~~~~~~~~------------~ 1008 (1030)
||||||||++|.+.|++|++|||||||||||||.|+++|||+||+|||+|||++|.++|.++|+++. |
T Consensus 1033 AsHmmlTa~~c~~~gi~FasVHDSfwTHA~dvd~M~~ilRe~FV~L~s~~il~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 1112 (1134)
T 3spa_A 1033 SSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETL 1112 (1134)
T ss_dssp HHHHHHHHHHHHHTTCCCEEETTEEEEEGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSCCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEeecccccCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHcccchhhhhhhhHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999754 9
Q ss_pred CCCCCCCCCCcccccCCCCCCC
Q 036741 1009 PPLPERGDFDLREVLGSPYFFN 1030 (1030)
Q Consensus 1009 p~~P~~G~LDL~~Vl~S~YFF~ 1030 (1030)
|++|++|+|||++|++|+||||
T Consensus 1113 p~~P~~G~lDL~~Vl~S~YFFs 1134 (1134)
T 3spa_A 1113 QAVPKPGAFDLEQVKRSTYFFS 1134 (1134)
T ss_dssp HSCCCCCSCCGGGGGGCTTSCC
T ss_pred CCCCCCCCccHHHHhcCCCCCC
Confidence 9999999999999999999997
No 3
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=97.71 E-value=0.00022 Score=85.83 Aligned_cols=303 Identities=14% Similarity=0.149 Sum_probs=176.4
Q ss_pred hHHHHHHHhhcCcccEecHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 036741 505 EPVFEALDTLGNTKWRVNNRVLSVLDRIWSCG-GRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQR 583 (1030)
Q Consensus 505 ~~v~~aLN~Lqst~w~IN~~VL~vi~~~w~~g-~~i~~l~~~~~~plP~~p~~~d~~~~~~wk~~~~~~~~~~~~~~s~R 583 (1030)
+.+-.+|...|.+|++||..+..+...+=+.+ ..+.+. .++..|. . ..+..+. +.-+| .+.+
T Consensus 338 ~lqakalkkaQ~q~hrvn~~m~~~~e~LgEDalltmlGa---~~l~~e~-l---n~~~RkS-------lEGKN---~sV~ 400 (1118)
T 3q23_A 338 PEQKAALKAEQATEFYVHTPMVQFYETLGKDRILELMGA---GTLNKEL-L---NDNHAKS-------LEGKN---RSVE 400 (1118)
T ss_dssp HHHHHHHHHHHHCCBEECHHHHHHHHHHHHHHHHHHHSC---CSCCTTS-S---CHHHHHH-------HHHHH---HHHH
T ss_pred HHHHHHHHHhhccCceecccHHHHHHHhchhHHHHHhCc---ccccccc-c---chhHHhh-------hhccc---HHHH
Confidence 45667899999999999999999977664433 122222 1111111 1 1111111 11111 1112
Q ss_pred hhHHH-------HHHHHHhhcCCCceeeccccCCCCcccCCCCCCCCCCchhhhhhhhcccCc-ccC---ccchHHHHHH
Q 036741 584 CDIEL-------KLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR-TLG---KSGLHWLKIH 652 (1030)
Q Consensus 584 ~~~~~-------~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~Faegk-pLg---~~Gl~WLkIh 652 (1030)
.++.. .-+++... +.-.+|||++|+==||.=-. .-+|||.+=|-|-++.=++.. .|+ ...++-|+.+
T Consensus 401 rdi~~~~d~iN~i~e~~~~~-~~vpIyf~y~mtrVGR~qm~-g~~NPQSsKLhRemv~pt~StV~L~~~N~~dm~~FqLg 478 (1118)
T 3q23_A 401 DSYNQLFSVIEQVRAQSEDI-STVPIHYAYNMTRVGRMQML-GKYNPQSAKLVREAILPTKATLDLSNQNNEDFSAFQLG 478 (1118)
T ss_dssp HHHHHHHHHHHHHHHHCSCG-GGCCEECCEEECTTSCEEES-SSSSTTTCHHHHTTEESCCEEECCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccc-ccCceeeeechhhhhhhhhc-CCCCchhHHHHHHHhcCCceEeecCCCCHHHHHHHHHH
Confidence 12111 11222211 11279999999555554322 778999999999998876543 455 3468888888
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHh-----------hHHHHHHhhcCCCCcc---hhhhcCCChHHHHHHHHHHHHHHhcCC
Q 036741 653 LANLYAGGVDKLSHEGRLAFTEN-----------HLDDIFDSADKPLEGR---RWWLKAEDPFQCLAVCINLTEALRSSS 718 (1030)
Q Consensus 653 lAN~~g~G~DK~s~deRi~wv~~-----------n~~~I~~sA~dPl~~~---~wW~~Ad~PwQfLA~C~El~~a~~~~~ 718 (1030)
+|-.+|=.+||.+-+.-++=+.+ -+.+|+....=|-... .=-+++++||-.+-+-+|+++++....
T Consensus 479 vaQslGiKVeK~~~e~~~~~~~~~l~t~lkpaVdmm~eiLt~G~~d~~~~dtl~~alg~~k~fvaamA~~e~Ary~la~G 558 (1118)
T 3q23_A 479 LAQALDIKVHTMTREVMSDELTKLLEGNLKPAIDMMVEFNTTGSLPENAVDVLNTALGDRKSFVALMALMEYSRYLVAED 558 (1118)
T ss_dssp HHHHTTCCGGGSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHSCCCTTHHHHHHHHHGGGCSHHHHHHHHHHHHHHHCSC
T ss_pred HHHHcCcchhcccHHHHHHHHHHHhcccccHHHHHHHHHhccCCCChhHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999656678777665544433 2233443332221000 012678899554448999998877655
Q ss_pred CCcccccccccccCCCchhhHHHHh-hCCccc-----------------ccccccCCCC-CcchhhhHHHHHHHHHHHHh
Q 036741 719 PETFISHIPVHQDGSCNGLQHYAAL-GRDTLG-----------------AAAVNLVARE-KPADVYSGIAARVLVIIQRD 779 (1030)
Q Consensus 719 P~~y~S~lPV~qDGSCNGLQHyAAL-~rD~~G-----------------a~~VNLip~d-~P~DvYs~Va~~V~~~i~~d 779 (1030)
-..|.+.|-+-.||--||=-..=-+ |.-... |+.+|=.-+. .--|.|..+++.+...+...
T Consensus 559 ~asF~T~L~~ElDGVTNGP~Namv~~G~g~~t~~~~~nl~KgG~F~G~~g~t~N~~~~~~~n~DLYE~ts~~l~~aLg~~ 638 (1118)
T 3q23_A 559 KSAFVTPLYVEADGVTNGPINAMMLMTGGLFTPDWIRNIAKGGLFIGSPNKTMNEHRSTADNNDLYQASTNALMESLGKL 638 (1118)
T ss_dssp GGGEEECCEEEEEETTHHHHHHHHHHCCSCCCHHHHHHHHTTTEEESCTTCCHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred CccceeeeEEEecCccccHHHHHHHhcCCcCCHHHHHHhhccceeecCCCchhhhhhcccCCchHHHHHHHHHHHHHHHh
Confidence 5689999999999999995432222 221111 1333332221 33799999999999888755
Q ss_pred hhcCCCCCc------hH-HHHHHh----------hccCccccccccceeeecccchhhHHHHHH
Q 036741 780 AQRDPAVFP------DA-LRAKLL----------LSQVDRKLVKQTVMTSVYGVTYIGARDQIK 826 (1030)
Q Consensus 780 a~~d~~~~~------~~-~~Ak~l----------~~~i~RKvVKqtVMT~vYGvT~~Gar~qI~ 826 (1030)
..+=....| .. .++..+ .-.++|++.|.|+=..+||+...|+..-|.
T Consensus 639 ~~~~~~n~Pwq~q~~~l~sl~s~f~gd~~~~Eng~~~l~R~~aKnPlT~~~YGSg~rgia~gva 702 (1118)
T 3q23_A 639 RSNYASNMPIQSQIDSLLSLMDLFLPDINLGENGALELKRGIAKNPLTITIYGSGARGIAGKLV 702 (1118)
T ss_dssp HHTTTTCHHHHHHHHHHHHHHHHHCTTEEECTTCCEEECTHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hhhcccCCchHHHHHHHHHHHHHhhcccccCCCcchhhhhhhhhCCceeeeecCchHHHHHHHH
Confidence 322111111 01 122222 126899999999999999999887765543
No 4
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=74.50 E-value=1.8 Score=51.41 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=119.9
Q ss_pred ccccccCCCchhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCCCCCchHHHHHHhhccCccccc
Q 036741 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLV 805 (1030)
Q Consensus 726 lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~~~~~~~~~Ak~l~~~i~RKvV 805 (1030)
.=|.-|-|-==|-.+|.|.+|+....+.+ ...|||+..|..+-..- .+. . ..-.|+..
T Consensus 313 ~lv~aDySqiElRvlAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~---~~~----v----------~~~~R~~a 370 (540)
T 4dfk_A 313 LLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVP---REA----V----------DPLMRRAA 370 (540)
T ss_dssp EEEEEEETTHHHHHHHHHHCCHHHHHHHH-----TTCCHHHHHHHHHHTCC---GGG----C----------CHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHcCCC---hhh----c----------CHHHHhHH
Confidence 67888999999999999999997766654 35799999887664320 000 0 11258999
Q ss_pred cccceeeecccchhhHHHHHHHHHhhcCCCCchhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEE
Q 036741 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR 885 (1030)
Q Consensus 806 KqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~ylak~i~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV~ 885 (1030)
|...--.+||.+.+|...++ |+ +.+ -|+.+.+...+.||+ +.+|+.++.....+.| .|
T Consensus 371 K~~~fg~~YG~~~~~La~~l-------gi-s~~---------eA~~~i~~~~~~~p~---v~~~~~~~~~~a~~~G-yv- 428 (540)
T 4dfk_A 371 KTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPK---VRAWIEKTLEEGRRRG-YV- 428 (540)
T ss_dssp HHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHSTH---HHHHHHHHHHHHHHHS-EE-
T ss_pred HHHHHhhhhCCchhHHHHHc-------CC-CHH---------HHHHHHHHHHHhChh---HHHHHHHHHHHHHhCC-cE-
Confidence 99999999999999988765 33 211 234555666667777 5566666655544443 12
Q ss_pred EEcCCCCeEEEeeccCcceEEEeeeEEEEEecCCCcCCHHhhhccCCCcchhhhhhHHHHHHHH-----HHHHcCCc-EE
Q 036741 886 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-----ACRKAGLT-FA 959 (1030)
Q Consensus 886 WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~l~~~~d~vd~rKq~~af~PNFIHSLDAsHmmlta~-----~~~~~gi~-fa 959 (1030)
+|..|=...-|--.+ .....|.+.--.+-|++=+==|+=++..|. ...+.|.. ..
T Consensus 429 -~Tl~GRrr~~p~~~s------------------~~~~~r~~aeR~a~N~~iQGsaAdi~K~ami~~~~~l~~~~~~l~l 489 (540)
T 4dfk_A 429 -ETLFGRRRYVPDLEA------------------RVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLL 489 (540)
T ss_dssp -ECTTCCEEECGGGGC------------------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred -ECCCCCeecCCcccc------------------ccHHHHhhhhhhHhhhhhHhHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 566664322211110 011112121223456655555554443321 23445654 45
Q ss_pred EeeccccC--CCCChhHHHHHHHHHHHH
Q 036741 960 GVHDSYWT--HACDVDEMNRILREKFVE 985 (1030)
Q Consensus 960 ~VHDSFwT--ha~dvd~m~~ilRe~FV~ 985 (1030)
.|||.... +...++.+..++++.+-.
T Consensus 490 qVHDElv~ev~~~~~~~~~~~v~~~Me~ 517 (540)
T 4dfk_A 490 QVHDELVLEAPKERAEAVARLAKEVMEG 517 (540)
T ss_dssp ECSSEEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred EEcceEEEEeCHHHHHHHHHHHHHHHhc
Confidence 69999765 567788999999987754
No 5
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=67.66 E-value=9.7 Score=45.58 Aligned_cols=210 Identities=20% Similarity=0.194 Sum_probs=123.5
Q ss_pred HHHHHHhcCCCCcccccccccccCCCchhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCCCCCc
Q 036741 709 NLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFP 788 (1030)
Q Consensus 709 El~~a~~~~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~~~~~ 788 (1030)
+++.+... |.+ +.-|.-|-|-==|-.+|.|.+|.....+.+ ...|||+..|..+-..- .+. .
T Consensus 365 ~iR~~f~~--~~g---~~lv~aDysqiElRilA~ls~d~~l~~af~-----~g~Dih~~tA~~~f~~~---~e~----v- 426 (605)
T 2kfn_A 365 RIRQAFIA--PED---YVIVSADYSQIELRIMAHLSRDKGLLTAFA-----EGKDIHRATAAEVFGLP---LET----V- 426 (605)
T ss_dssp HHHHTBBC--CTT---EEEEEEEETTHHHHHHHHHTTCHHHHHHHH-----TTCCHHHHHHHHHTTCC---GGG----C-
T ss_pred hHhheeeC--CCC---CEEEEechhhhHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHhCCC---hhh----c-
Confidence 45666543 234 367889999999999999999998777665 45799998887763210 000 0
Q ss_pred hHHHHHHhhccCccccccccceeeecccchhhHHHHHHHHHhhcCCCCchhhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 036741 789 DALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMS 868 (1030)
Q Consensus 789 ~~~~Ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~ylak~i~~ai~e~f~~A~~im~ 868 (1030)
..-.|+..|...--.+||.+.+|.+.++ |+..++ |+.+.+...+.||+ +.+
T Consensus 427 ---------t~~~R~~aK~~~fg~~YG~~~~~la~~l-------~i~~~e----------a~~~i~~~~~~~p~---v~~ 477 (605)
T 2kfn_A 427 ---------TSEQRRSAKAINFGLIYGMSAFGLARQL-------NIPRKE----------AQKYMDLYFERYPG---VLE 477 (605)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCCTTHHHHHH-------TCCTTT----------HHHHHHHHHHHCHH---HHH
T ss_pred ---------CHHHHhhhhhhhccccccCCHHHHHHHc-------CCCHHH----------HHHHHHHHHHHCcc---HHH
Confidence 0124899999999999999999988764 432222 34455566667776 566
Q ss_pred HHHHHHHHHHcCCCcEEEEcCCCCeEEEeeccCcceEEEeeeEEEEEecCCCcCCHHhhhccCCCcchhhhhhH---HHH
Q 036741 869 WLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGS---HMM 945 (1030)
Q Consensus 869 WL~~~A~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~l~~~~d~vd~rKq~~af~PNFIHSLDAs---Hmm 945 (1030)
|+.++.+...+.| .| +|.+|-...-|--. +.....|.+.--.+-|++=+==|+ .+.
T Consensus 478 ~~~~~~~~a~~~g-~v--~tl~GRrr~~p~~~------------------s~~~~~r~~~~r~a~N~~iQgsaaDi~k~a 536 (605)
T 2kfn_A 478 YMERTRAQAKEQG-YV--ETLDGRRLYLPDIK------------------SSNGARRAAAERAAINAPMQGTAADIIKRA 536 (605)
T ss_dssp HHHHHHHHHHHHS-EE--ECTTCCEEECTTTT------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cE--ECCCCCeEECCccc------------------CCCchhhhhhhhhHhhHHhHHHHHHHHHHH
Confidence 7776665544433 22 56666322111000 001111111111344555443344 333
Q ss_pred HHHH--HHHHcCCc---EEEeeccccC--CCCChhHHHHHHHHHHHHh
Q 036741 946 MTAV--ACRKAGLT---FAGVHDSYWT--HACDVDEMNRILREKFVEL 986 (1030)
Q Consensus 946 lta~--~~~~~gi~---fa~VHDSFwT--ha~dvd~m~~ilRe~FV~L 986 (1030)
|..+ .+.+.|+. +..|||.... +...++.+..++++.+-.-
T Consensus 537 m~~~~~~l~~~~~~~~~~l~vHDEl~~ev~~~~~~~~~~~v~~~M~~~ 584 (605)
T 2kfn_A 537 MIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENC 584 (605)
T ss_dssp HHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCceeeEEeccEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 3322 23445763 3569998776 4567888888888876554
No 6
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=58.38 E-value=5.3 Score=47.94 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=118.4
Q ss_pred ccccccCCCchhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCCCCCchHHHHHHhhccCccccc
Q 036741 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLV 805 (1030)
Q Consensus 726 lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~~~~~~~~~Ak~l~~~i~RKvV 805 (1030)
.=|.-|-|-==|-.+|.|.+|...-.+.+ ...|||+..|..+-.. ..+.. ..-.|+..
T Consensus 364 ~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~-------~~~~v----------t~~~R~~a 421 (592)
T 3pv8_A 364 LIFAADYSQIELRVLAHIAEDDNLMEAFR-----RDLDIHTKTAMDIFQV-------SEDEV----------TPNMRRQA 421 (592)
T ss_dssp EEEEEEETTHHHHHHHHHHTCHHHHHHHH-----TTCCHHHHHHHHHHSC-------CTTTC----------CHHHHHHH
T ss_pred EEEEechhhHHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHhCC-------ChhhC----------CHHHHHHH
Confidence 67888999999999999999998766654 4579999988776321 01000 01248999
Q ss_pred cccceeeecccchhhHHHHHHHHHhhcCCCCchhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEE
Q 036741 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR 885 (1030)
Q Consensus 806 KqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~ylak~i~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV~ 885 (1030)
|...--.+||.+.+|...++ |+ +.+ -|+.+.+..-+.||+ +.+|+.++.+...+.| .|
T Consensus 422 K~~~fg~~YG~~~~~La~~l-------~i-~~~---------eA~~~i~~~~~~~p~---v~~~~~~~~~~a~~~G-yv- 479 (592)
T 3pv8_A 422 KAVNYGIVYGISDYGLAQNL-------NI-SRK---------EAAEFIERYFESFPG---VKRYMENIVQEAKQKG-YV- 479 (592)
T ss_dssp HHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHS-EE-
T ss_pred HHHHHHHHhcCChHHHHHHc-------CC-CHH---------HHHHHHHHHHHHChh---HHHHHHHHHHHHHHcC-CE-
Confidence 99999999999999987765 33 221 234555666677777 5566666655544433 12
Q ss_pred EEcCCCCeEEEeeccCcceEEEeeeEEEEEecCCCcCCHHhhhccCCCcchhhhhhHHHHHHH---H--HHHHcCCc---
Q 036741 886 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTA---V--ACRKAGLT--- 957 (1030)
Q Consensus 886 WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~l~~~~d~vd~rKq~~af~PNFIHSLDAsHmmlta---~--~~~~~gi~--- 957 (1030)
+|..|=...-|=-. +.....|.+.--.+-|++=+==|+=++..| + ...+.|+.
T Consensus 480 -~Tl~GRrr~~p~i~------------------s~n~~~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~~~~~~l 540 (592)
T 3pv8_A 480 -TTLLHRRRYLPDIT------------------SRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHL 540 (592)
T ss_dssp -ECTTCCEEECGGGG------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred -ECCCCCeeeCCCcc------------------ccchhhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 35555322111000 001111211111345775554454333222 2 34456762
Q ss_pred EEEeecccc--CCCCChhHHHHHHHHHHHHh
Q 036741 958 FAGVHDSYW--THACDVDEMNRILREKFVEL 986 (1030)
Q Consensus 958 fa~VHDSFw--Tha~dvd~m~~ilRe~FV~L 986 (1030)
+..|||... +++..++.+..++++.+-.-
T Consensus 541 ~lqVHDElv~ev~~~~~~~~~~~v~~~Me~a 571 (592)
T 3pv8_A 541 LLQVHDELILEAPKEEMERLCRLVPEVMEQA 571 (592)
T ss_dssp EEECSSEEEEEEEGGGHHHHHHHHHHHHHTS
T ss_pred EEEEcceeEEEeCHHHHHHHHHHHHHHHhhc
Confidence 556999865 56688888899999887543
No 7
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=45.18 E-value=12 Score=46.57 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=111.6
Q ss_pred ccccccCCCchhhHHHHhhCCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCCCCCchHHHHHHhhccCccccc
Q 036741 726 IPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLV 805 (1030)
Q Consensus 726 lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~~~~~~~~~Ak~l~~~i~RKvV 805 (1030)
.-|.-|-|-==|-.+|.|.+|.....+.+ ...|||+..|..+-..- .+.. ..-.|+..
T Consensus 605 ~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~-------~e~v----------t~~~R~~a 662 (832)
T 1bgx_T 605 LLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVP-------REAV----------DPLMRRAA 662 (832)
T ss_dssp CEEEEEESSHHHHHHHHTTTCTTHHHHHH-----HTCCHHHHHHHHHHTCC-------TTSC----------CTTHHHHH
T ss_pred EEEEechhhhHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHhCCC-------hhhc----------CHHHHHHH
Confidence 56777888778888999999987666554 34699998876653210 0000 12258899
Q ss_pred cccceeeecccchhhHHHHHHHHHhhcCCCCchhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEE
Q 036741 806 KQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVR 885 (1030)
Q Consensus 806 KqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~ylak~i~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV~ 885 (1030)
|...--.+||.+.+|.+.++ |+ +.+ -|+.+.+...+.||+ +.+|+.++.+...+.|- |
T Consensus 663 K~~nfgi~YG~~~~gLa~~l-------gi-s~~---------eA~~~i~~~~~~~p~---v~~~~~~~~~~a~~~Gy-v- 720 (832)
T 1bgx_T 663 KTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPK---VRAWIEKTLEEGRRRGY-V- 720 (832)
T ss_dssp HHHHHHTTSCCCHHHHHHHS-------SC-CHH---------HHHHHHHHHHHHCHH---HHHHHHHHTHHHHTTSS-C-
T ss_pred HHHHHhhhcCCchhHHHHHc-------CC-CHH---------HHHHHHHHHHHHCcc---HHHHHHHHHHHHHHCCe-E-
Confidence 99999999999999887654 43 221 244556666677777 56777777666555432 2
Q ss_pred EEcCCCCeEEEeeccCcceEEEeeeEEEEEecCCCcCCHHhhhccCCCcchhhhhhHHH---HHHHHH--HHHcCCc-EE
Q 036741 886 WTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHM---MMTAVA--CRKAGLT-FA 959 (1030)
Q Consensus 886 WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~l~~~~d~vd~rKq~~af~PNFIHSLDAsHm---mlta~~--~~~~gi~-fa 959 (1030)
+|..|-...-|-- .+.....|...--.+-|++=+==|+=+ .|..+. ..+.+.. +.
T Consensus 721 -~Tl~GRrr~~p~i------------------~s~~~~~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~~~~~~lvl 781 (832)
T 1bgx_T 721 -ETLFGRRRYVPDL------------------EARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLL 781 (832)
T ss_dssp -CCSSCCCCCCGGG------------------SCSSHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHHTCEEEE
T ss_pred -EecCCCEEECCcc------------------cCCCcchhhhhhhhhccHhhHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 4444421110000 001111122212245675544334433 233221 2223553 45
Q ss_pred EeeccccC--CCCChhHHHHHHHHHHHH
Q 036741 960 GVHDSYWT--HACDVDEMNRILREKFVE 985 (1030)
Q Consensus 960 ~VHDSFwT--ha~dvd~m~~ilRe~FV~ 985 (1030)
.|||.... +...++.+..++++.+-.
T Consensus 782 qVHDElv~evp~~~~~~~~~~v~~~M~~ 809 (832)
T 1bgx_T 782 QVHDELVLEAPKERAEAVARLAKEVMEG 809 (832)
T ss_dssp EETTEEEEEC----CHHHHHHHHHHHHS
T ss_pred EeccEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 69998775 456788888888887654
No 8
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=26.47 E-value=54 Score=39.93 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=64.8
Q ss_pred ccccccCCCchhhHHHHhh---CCcccccccccCCCCCcchhhhHHHHHHHHHHHHhhhcCCCCCchHHHHHHhhccC-c
Q 036741 726 IPVHQDGSCNGLQHYAALG---RDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQV-D 801 (1030)
Q Consensus 726 lPV~qDGSCNGLQHyAAL~---rD~~Ga~~VNLip~d~P~DvYs~Va~~V~~~i~~da~~d~~~~~~~~~Ak~l~~~i-~ 801 (1030)
.-|.-|-|-==|=.+|.|. +|.....+.+ .+ |||+..|. +- ++ .
T Consensus 464 ~lv~aDySqiElRilAhls~~~~D~~l~~af~--~g----DiH~~tA~-~~-------------------------gv~~ 511 (698)
T 1x9m_A 464 VQAGIDASGLELRCLAHFMARFDNGEYAHEIL--NG----DIHTKNQI-AA-------------------------ELPT 511 (698)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHHTTHHHHHHH--HS----CHHHHHHH-HS-------------------------CCSS
T ss_pred EEEEEehhhhHHHHHHHHhhhcCcHHHHHHHh--CC----CHhHHHHH-Hh-------------------------CCch
Confidence 6788899888888888888 9998777665 12 99997665 31 12 2
Q ss_pred cccccccceeeecccchhhHHHHHHHHHhhcCCCCchhhhhhhhhHHHHHHHHHHHHHHHhHHHH
Q 036741 802 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGI 866 (1030)
Q Consensus 802 RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~ylak~i~~ai~e~f~~A~~i 866 (1030)
|+..|...--.+||.+..|...++ |+ +.+ -|+.+.+..-+.||+.+..
T Consensus 512 R~~aK~~nfg~~YG~g~~~La~~l-------gi-s~~---------eA~~~i~~~~~~~p~v~~~ 559 (698)
T 1x9m_A 512 RDNAKTFIYGFLYGAGDEKIGQIV-------GA-GKE---------RGKELKKKFLENTPAIAAL 559 (698)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHTTT-------TC-CHH---------HHHHHHHHHHHTCHHHHHH
T ss_pred HhhhHHHHHccccCCCHHHHHHHc-------CC-CHH---------HHHHHHHHHHHHCcCHHHH
Confidence 999999999999999999887543 32 211 2345555666667764443
No 9
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=21.75 E-value=4.8e+02 Score=30.60 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCccchhhhcCCChhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 036741 150 IVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYRMLKMRQVKIET------EAWEKAANEYRELLM 216 (1030)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RQ~~lE~------~~~~~a~~~~~~~~~ 216 (1030)
+.-+++.-|.|+.++++.+....+..+...+.+|-...+-+.....|...|. +..+.|++-|.+.++
T Consensus 91 gE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~ 163 (526)
T 3iyk_A 91 GERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILT 163 (526)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899998888777666555554566677666666666666665533 356677777665543
No 10
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=19.11 E-value=6.6e+02 Score=24.70 Aligned_cols=69 Identities=16% Similarity=0.373 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccCCCccchhhhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036741 149 SIVEEIQELLQEMKKEEQREGENGSGRNRRRVARGMGSGKYR-MLKMRQVKIETEAWEKAANEYRELLMDMCE 220 (1030)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~RQ~~lE~~~~~~a~~~~~~~~~~~~~ 220 (1030)
.-+|.+|-++|.+++....+..+-..++.......+....-. .-.+.-+..|.-.| ..-|.++++..|+
T Consensus 28 tkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~W---KKiWE~EL~~Vce 97 (141)
T 3okq_A 28 SKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHW---KKTWEAELDKVCE 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchh---HHHHHHHHHHHHH
Confidence 358889999999999988776655554444444444333222 11233445555566 4456667777665
Done!