Your job contains 1 sequence.
>036742
MESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLP
RNISTSLSTSSVRHALKIDKDDRFGSPPKFSSPARRRQSSKLSEKPNYNRRAMTAPKLRP
VLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKFEAPTIGELNEMVASAKMFQ
GPITTTNAALRFESTDSIGDIFFSRDGFAKNGGVQADVHPRPVIFPQRNSSSHHESRSNS
GLGIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRR
KTGQADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGF
ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP
VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLI
KWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS
MTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPK
RLVMVRGKIQKLLAEFVHPKLILLVMHYI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036742
(629 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 488 1.4e-46 1
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 414 9.9e-39 1
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 406 7.6e-38 1
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 405 1.0e-37 1
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 404 1.3e-37 1
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 402 2.3e-37 1
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 402 2.3e-37 1
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 401 3.1e-37 1
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 400 4.0e-37 1
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 399 5.3e-37 1
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 332 2.0e-29 1
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 307 1.1e-26 1
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 287 1.7e-24 1
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 287 1.7e-24 1
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 281 7.6e-24 1
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 262 1.8e-21 1
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 144 7.8e-16 2
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 197 5.8e-13 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 197 5.8e-13 1
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 197 8.8e-13 1
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 188 8.3e-12 1
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 188 8.3e-12 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 178 8.5e-11 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 178 1.0e-10 1
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 175 1.9e-10 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 171 7.8e-10 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 171 9.2e-10 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 171 9.9e-10 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 165 2.9e-09 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 165 2.9e-09 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 165 3.2e-09 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 165 3.2e-09 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 157 2.4e-08 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 158 2.5e-08 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 156 3.8e-08 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 154 4.3e-08 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 155 4.4e-08 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 104 4.5e-08 2
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 158 4.8e-08 2
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 154 5.2e-08 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 151 1.1e-07 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 151 1.3e-07 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 150 1.6e-07 1
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 149 1.9e-07 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 148 2.6e-07 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 148 2.6e-07 1
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 147 2.6e-07 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 148 2.7e-07 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 147 3.0e-07 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 147 3.2e-07 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 147 3.4e-07 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 147 3.5e-07 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 147 3.6e-07 1
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 146 4.1e-07 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 145 6.3e-07 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 144 6.4e-07 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 144 7.8e-07 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 144 7.9e-07 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 144 7.9e-07 1
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 143 8.4e-07 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 143 8.7e-07 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 143 8.7e-07 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 143 8.9e-07 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 143 1.0e-06 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 141 1.6e-06 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 138 2.7e-06 1
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 138 3.7e-06 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 138 3.7e-06 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 137 4.8e-06 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 136 6.2e-06 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 136 6.3e-06 1
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 103 2.1e-05 2
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 129 3.5e-05 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 119 0.00040 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 119 0.00040 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 118 0.00040 1
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 106/292 (36%), Positives = 165/292 (56%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P SL+ I H AQ LK+LV + +CPH+L G SGSGK+ L MALL +IYG +
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62
Query: 408 CW-----NEKWPTQ-------VLVPVASSAHHVELNVNLQA-NAKYALMGLVKEIRDNLA 454
N W + + SS +HVEL + +Y + ++KE+ N
Sbjct: 63 AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122
Query: 455 ITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
I + ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E++K+ C
Sbjct: 123 IDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCL 182
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
++++ P EI++VL +A+KE L FAA+IA K+ ++LR+AI++LE C+ NYPF
Sbjct: 183 NVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPF 242
Query: 573 ADDQPI-PLGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q I P+ W + SPK+L VRGK+ +LL + P++IL
Sbjct: 243 TGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVIL 294
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 88/289 (30%), Positives = 154/289 (53%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIG 63
Query: 408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
+ Q + + +S +H+E+N + N+ + + ++K + + L
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C ++
Sbjct: 124 SSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I VL + RKE L T A ++A K+ +NLRKA++ EAC+ YPF +D
Sbjct: 184 VPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 243
Query: 576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q IP W +P+RL+ VRG++ +LL + P++I+
Sbjct: 244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 406 (148.0 bits), Expect = 7.6e-38, P = 7.6e-38
Identities = 89/289 (30%), Positives = 158/289 (54%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++PS+L+ HR +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 4 WVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63
Query: 408 CWNEKW-------PTQVLVPVASSA--HHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
+ P++ + +++ A +H+E+N + N + + L+K + + L
Sbjct: 64 VEKLRIEHQSITAPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQLET 123
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC II +++ C ++
Sbjct: 124 STQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSVR 183
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I VL + +KE +L A ++A K+ +NLRKA++ E+C+ YPF+ D
Sbjct: 184 VPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYPFSAD 243
Query: 576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q IP + W SP+RL+ VRG++ +LL + P++I+
Sbjct: 244 QDIPEMDWEIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIM 292
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 405 (147.6 bits), Expect = 1.0e-37, P = 1.0e-37
Identities = 87/289 (30%), Positives = 153/289 (52%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
+ Q + + +S +H+E+N + N+ + + ++K + + L
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C I+
Sbjct: 124 SSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIR 183
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I VL + +KE L A ++A K+ +NLRKA++ EAC+ YPF +D
Sbjct: 184 VPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPFTED 243
Query: 576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q IP W +P+RL+ VRG++ +LL + P++I+
Sbjct: 244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIM 292
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 404 (147.3 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 90/289 (31%), Positives = 150/289 (51%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P+SL H+ +A LK LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 4 WVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63
Query: 408 CWNEKWPTQ-VLVP--------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITP 457
+ Q + P +S +H+E+N + N+ + + L+K + + I
Sbjct: 64 VEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQS 123
Query: 458 EVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
++++ EVD+ + Q+ ++ M+ Y +C+LILCC +I +++ C ++
Sbjct: 124 SAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVR 183
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P E+ VL + RKE L A +IA K+ +NLRKA++ EAC+ YPF+ D
Sbjct: 184 VPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSPD 243
Query: 576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q IP W SP+RL+ VR ++ +LL + P++I+
Sbjct: 244 QDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIM 292
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 402 (146.6 bits), Expect = 2.3e-37, P = 2.3e-37
Identities = 95/289 (32%), Positives = 153/289 (52%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P+SL+ H + LK ++ G+ PH+L+ G SG+GK+ +A+L EIYG
Sbjct: 3 WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPN 62
Query: 408 CWNEK-------WPTQ---VLVPVASSAHHVELNVNLQANA--KYALMGLVKEIRDNLAI 455
K PT + + SS +H+E+N +A + + + ++KEI + I
Sbjct: 63 ALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPG-EAGSYDRVVIQTIIKEIAQSPPI 121
Query: 456 TPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
A ++++ EVDK ++ Q+ ++ M+ Y C+LILCC+ +I+ +K+ C
Sbjct: 122 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P EI +VL ++A E FDL A +A ++ NLR A+M LE+ KA YPF
Sbjct: 182 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 241
Query: 574 DDQPIPLGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLI 622
+ L W + SP RL +VRGK+ +LL + P+LI
Sbjct: 242 STELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELI 290
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 402 (146.6 bits), Expect = 2.3e-37, P = 2.3e-37
Identities = 86/289 (29%), Positives = 150/289 (51%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
+ Q + + +S +H+E+N + N+ + + ++K + + L
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C ++
Sbjct: 124 NSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I VL + +KE L A K+A K+ +NLRKA++ EAC+ YPF D
Sbjct: 184 VPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYPFTVD 243
Query: 576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q IP W +P+RL+ VRG++ +LL + P++I+
Sbjct: 244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 401 (146.2 bits), Expect = 3.1e-37, P = 3.1e-37
Identities = 85/289 (29%), Positives = 152/289 (52%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
+ Q + + +S +H+E+N + N+ + + ++K + + L
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C ++
Sbjct: 124 NSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF D
Sbjct: 184 VPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTAD 243
Query: 576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q IP W + +P+RL+ VRG++ +LL + P++I+
Sbjct: 244 QEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 400 (145.9 bits), Expect = 4.0e-37, P = 4.0e-37
Identities = 85/289 (29%), Positives = 152/289 (52%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
+ Q + + +S +H+E+N + N+ + + ++K + + L
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C ++
Sbjct: 124 SSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF D
Sbjct: 184 VPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTAD 243
Query: 576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q IP W +P+RL+ VRG++ +LL + P++I+
Sbjct: 244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 399 (145.5 bits), Expect = 5.3e-37, P = 5.3e-37
Identities = 85/289 (29%), Positives = 151/289 (52%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 408 CWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN--LAI 455
+ Q + + +S +H+E+N + N+ + + ++K + + L
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C ++
Sbjct: 124 NSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF D
Sbjct: 184 VPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTAD 243
Query: 576 QPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q IP W +P+RL+ VRG++ +LL + P++I+
Sbjct: 244 QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 332 (121.9 bits), Expect = 2.0e-29, P = 2.0e-29
Identities = 81/289 (28%), Positives = 147/289 (50%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 43 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSG 102
Query: 408 CWNEKWPT---------QVLVPVASSAHHVELNVNLQANA--KYALMGLVKEIRDN--LA 454
+ T +V V SS +H+E+N + A + ++ L+K++ +
Sbjct: 103 VERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPS-DAGMYDRTVVIDLIKQVAQTHQIE 161
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I+ + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 162 ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGI 221
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L ++E L + A ++ K+++NLR+A++ LEA K PF
Sbjct: 222 RVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTA 281
Query: 575 DQPIP-LGWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLI 622
+Q IP L W + +P +L +R ++ +LL + V P LI
Sbjct: 282 NQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLI 330
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 307 (113.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 80/292 (27%), Positives = 138/292 (47%)
Query: 350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACW 409
DKH+P SL+ H ++ L+ L G+ PH+LI G SG+GK+ +A L E+YG
Sbjct: 6 DKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGPGVE 65
Query: 410 NEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEV 459
K +V + +S +H+E+ + N + + L+KE+ +
Sbjct: 66 KIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQTQQVDQGA 125
Query: 460 SNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVD 517
++VI E D + Q ++ M+ Y+ + +LIL +II +++ +++V
Sbjct: 126 RQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVA 185
Query: 518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577
P EI VL A+KE + +S +IA ++ +NLR+A++ LE A N D+ P
Sbjct: 186 APSEDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQNEKVEDNTP 245
Query: 578 IPL-GWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
IP W + +P R++ VR K+ LL + P IL + +
Sbjct: 246 IPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTF 297
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 287 (106.1 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 86/302 (28%), Positives = 145/302 (48%)
Query: 348 WADKHQPSSL---NGFICHRHEAQLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEI 403
W DK++P L +G H +A LK L D C PH+L G SG+GK+ LL E+
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLKFLSAD--CMPHLLFCGPSGAGKKTRIKCLLREL 61
Query: 404 YGDACWNEKW-------PT--QVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNL 453
YG + P+ ++ + SS +H+E+ + + + + LVKE+
Sbjct: 62 YGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTS 121
Query: 454 AI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I T + S ++V+ E D Q+ ++ M+ Y ++CK++L CE IIE +++ C
Sbjct: 122 QIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+I V P ++ +VL ++ +E F L KI K++ NLR+AI+ EA + N
Sbjct: 182 IIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMENES 241
Query: 572 -FADDQPIPLG-WXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL--LVMH 627
A+ IP+ W S L+ VR ++ +LL+ + P +I L+ H
Sbjct: 242 GVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKKLLEH 301
Query: 628 YI 629
+
Sbjct: 302 LL 303
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 287 (106.1 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 86/302 (28%), Positives = 145/302 (48%)
Query: 348 WADKHQPSSL---NGFICHRHEAQLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEI 403
W DK++P L +G H +A LK L D C PH+L G SG+GK+ LL E+
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLKFLSAD--CMPHLLFCGPSGAGKKTRIKCLLREL 61
Query: 404 YGDACWNEKW-------PT--QVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNL 453
YG + P+ ++ + SS +H+E+ + + + + LVKE+
Sbjct: 62 YGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTS 121
Query: 454 AI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I T + S ++V+ E D Q+ ++ M+ Y ++CK++L CE IIE +++ C
Sbjct: 122 QIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+I V P ++ +VL ++ +E F L KI K++ NLR+AI+ EA + N
Sbjct: 182 IIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMENES 241
Query: 572 -FADDQPIPLG-WXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL--LVMH 627
A+ IP+ W S L+ VR ++ +LL+ + P +I L+ H
Sbjct: 242 GVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKKLLEH 301
Query: 628 YI 629
+
Sbjct: 302 LL 303
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 281 (104.0 bits), Expect = 7.6e-24, P = 7.6e-24
Identities = 76/292 (26%), Positives = 136/292 (46%)
Query: 350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACW 409
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 6 DKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGPGVE 65
Query: 410 NEKWPTQVLVP---------VASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEV 459
K +V + SS +H+E+ + + + + L+KEI +
Sbjct: 66 KIKIDNRVFQTTSNRKLEFNIVSSVYHLEITPSDVGTYDRVVVQELLKEIAQTQQVDLSA 125
Query: 460 SNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVD 517
++VI E D Q ++ M+ Y+ + +LIL +II +++ +++V
Sbjct: 126 KQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSRTLLVRVA 185
Query: 518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577
P +I +L A++E ++ + +IA ++ +NLR+A++ EA A + +DD P
Sbjct: 186 APSEEDICTILSTSAKREGWNEAPELNKRIAKESGRNLRRALLMFEAIYAQSEKVSDDTP 245
Query: 578 IPL-GWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
IP W + SP RL+ VR ++ LL + IL + +
Sbjct: 246 IPPPDWEALISVIAEEILAERSPARLLQVRARLYDLLTHCIPATTILKTLTF 297
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 262 (97.3 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 76/293 (25%), Positives = 133/293 (45%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W D+++P +L H+ ++ L L PH+L+ G SG+GK+ +A+L E+YG
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPG 62
Query: 408 CWNEKWPTQV-LVP--------VASSAHHVELNVNLQANAKYALMG-LVKEIRDNLAITP 457
K + L P + SS HH+E+ + N +M L+K++ + +
Sbjct: 63 SEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDL 122
Query: 458 EVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ ++VI D+ Q ++ M+ Y+++ +LIL IIE +++ +++
Sbjct: 123 QAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVR 182
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL---NYPF 572
V P EI+ V+ +I + + + IA +NLRKAI+ LE A N
Sbjct: 183 VAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQL 242
Query: 573 ADD-QPIPL-GWXXXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D +PL W + SP R++ VR + LL+ + P IL
Sbjct: 243 IDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTIL 295
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 144 (55.7 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 50/215 (23%), Positives = 92/215 (42%)
Query: 421 VASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSN-------AMIVIYEVDKA 472
V SS +H+E+ + + N + + L+KE+ + + S ++I E +
Sbjct: 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL 146
Query: 473 AEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA 532
+ Q ++ M+ Y+ + +LI+ C+ II +K+ C +I+ P EI +L +
Sbjct: 147 TKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVV 206
Query: 533 RKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL---GWXXXXXX 588
E L + +IA + NLR +++ LE+ ALN A P+ W
Sbjct: 207 TNERIQLETKDILKRIAQASNGNLRVSLLMLESM-ALNNELALKSSSPIIKPDWIIVIHK 265
Query: 589 XXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ S L+ R + LLA + +IL
Sbjct: 266 LTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300
Score = 129 (50.5 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 36/114 (31%), Positives = 57/114 (50%)
Query: 348 WADKHQPSSLNGFICHRHE-AQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + H E LK L + PH+L+ G +G+GK+ MALL I+G
Sbjct: 4 WVDKYRPKSLNA-LSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELNVN-LQANAKYALMGLVKEI 449
+ K + V V SS +H+E+ + + N + + L+KE+
Sbjct: 63 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEV 116
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 197 (74.4 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 60/226 (26%), Positives = 106/226 (46%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + +LKE+V N PH++ G G+GK + AL HE++G
Sbjct: 6 WVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG-- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK-EIRDNLAITPEV--SNAMI 464
E +VL AS + NV + Y + + K +I T EV S ++
Sbjct: 64 --KENISERVLELNASDDRGI--NVVREKIKAYTRISISKNKIHSE---TKEVLPSWKLV 116
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP-PVTHE 523
V+ E D E Q ++ I++ Y++ + IL C I + + + C + P+ +
Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIK 176
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E L+ I + E+ D+ KI + +LR+A+ L+ C +N
Sbjct: 177 -KEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCIN 221
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 197 (74.4 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 60/226 (26%), Positives = 106/226 (46%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + +LKE+V N PH++ G G+GK + AL HE++G
Sbjct: 6 WVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG-- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK-EIRDNLAITPEV--SNAMI 464
E +VL AS + NV + Y + + K +I T EV S ++
Sbjct: 64 --KENISERVLELNASDDRGI--NVVREKIKAYTRISISKNKIHSE---TKEVLPSWKLV 116
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP-PVTHE 523
V+ E D E Q ++ I++ Y++ + IL C I + + + C + P+ +
Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIK 176
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E L+ I + E+ D+ KI + +LR+A+ L+ C +N
Sbjct: 177 -KEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCIN 221
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 197 (74.4 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 54/209 (25%), Positives = 97/209 (46%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P +L+ H L+ L G+ PH+L+ G SGSGK+ L+EI+G
Sbjct: 4 WVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGPQ 63
Query: 408 CWNEKWPTQVLVP---------VASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAIT- 456
K + V V SS++H+E+ + + N + + L+K++ +
Sbjct: 64 VEKLKIDVKNFVTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTEQVDF 123
Query: 457 PEVSNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
S A +++I E D + Q ++ M+ Y+ + +LIL C +II +K+
Sbjct: 124 ANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRT 183
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLS 540
++++ P I +L +A KE S
Sbjct: 184 LLVRIPSPSVDNINHILGHVAEKESLKFS 212
Score = 150 (57.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 49/220 (22%), Positives = 96/220 (43%)
Query: 421 VASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAIT-PEVSNA-----MIVIYEVDKAA 473
V SS++H+E+ + + N + + L+K++ + S A +++I E D +
Sbjct: 86 VLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFANQSRAKHRFKIVIINEADSLS 145
Query: 474 EHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR 533
Q ++ M+ Y+ + +LIL C +II +K+ ++++ P I +L +A
Sbjct: 146 RDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSVDNINHILGHVAE 205
Query: 534 KEDFDLSMT-------FAAKIATKAKQNLRKAIMALEACKALNYPF---ADDQPIPLGWX 583
KE S F +KIA + +NLR+ +++ E N +D I L W
Sbjct: 206 KESLKFSTHNDSEINHFYSKIAETSNRNLRRCLLSFETISMQNETINVRSDVAKIALDWE 265
Query: 584 XXXXXXXXXXXXDPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ + L R + +LL+ + ++IL
Sbjct: 266 AIIRNMAISIQKNQNVATLAKTRVVLYELLSHCIPARIIL 305
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 188 (71.2 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 62/232 (26%), Positives = 107/232 (46%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K+ P S++ H+ + L++L + PHI+ G G GK L+ EI+ D
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 408 -------CWNEKWPTQVLVPVASSAHHVELNV-NLQANAKYALMGLVKEI---RDNLAIT 456
C ++ + V S +H+EL L K + ++KE+ + + +
Sbjct: 62 KIIRRPECITNA-ENKININVVQSNYHLELQCFELGNKDKIIVQSIIKELCSYKSSASFF 120
Query: 457 PEVSNAMIVIY-EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ I ++ + + +E Q ++ ++ Y + ++IL E IIE +K+ C I+
Sbjct: 121 SKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIR 180
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMT----FAAKIATKAKQNLRKAIMALE 563
V P EI VL I ++E+ S + F I T + NLRK IMALE
Sbjct: 181 VPLPSEEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGR-NLRKCIMALE 231
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 188 (71.2 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 62/232 (26%), Positives = 107/232 (46%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K+ P S++ H+ + L++L + PHI+ G G GK L+ EI+ D
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 408 -------CWNEKWPTQVLVPVASSAHHVELNV-NLQANAKYALMGLVKEI---RDNLAIT 456
C ++ + V S +H+EL L K + ++KE+ + + +
Sbjct: 62 KIIRRPECITNA-ENKININVVQSNYHLELQCFELGNKDKIIVQSIIKELCSYKSSASFF 120
Query: 457 PEVSNAMIVIY-EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ I ++ + + +E Q ++ ++ Y + ++IL E IIE +K+ C I+
Sbjct: 121 SKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIR 180
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMT----FAAKIATKAKQNLRKAIMALE 563
V P EI VL I ++E+ S + F I T + NLRK IMALE
Sbjct: 181 VPLPSEEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGR-NLRKCIMALE 231
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 178 (67.7 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 50/220 (22%), Positives = 98/220 (44%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G G GK L HE+ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ V Q +K P + ++++
Sbjct: 69 ---RSYADGVLELNASDDRGIDV-VRNQ----------IKHFAQKKLHLPPGKHKIVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 50/220 (22%), Positives = 100/220 (45%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + +GN PH++I G G GK + L H + G A
Sbjct: 23 WVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPA 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ E VL AS E +++ N +K I P + +I++
Sbjct: 83 -YKEG----VLELNASD----ERGIDVVRNR-------IKAFAQKKVILPPGRHKIIILD 126
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ ++++
Sbjct: 127 EADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQR 186
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+ I + E + + A + A+ ++R+A+ L++ A
Sbjct: 187 LLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVA 226
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 175 (66.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 53/241 (21%), Positives = 109/241 (45%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
+ K V +E P W +K++P L + + + LK +V DGN P+++I G G GK
Sbjct: 1 MSKPVTLEL--P-WVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTT 57
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
L +E+ GD +++ A+ +ELN + + +K+
Sbjct: 58 SIHCLAYELLGDEHYHQ----------AT----MELNASDDRGID-VVRNKIKQFAQTKI 102
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P +I++ E D Q ++ ++ Y+++ + C IIE +++ C ++
Sbjct: 103 SLPPGRQKIIILDEADSMTPGAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAIL 162
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+ + E++ L++I + ED + + A+ ++R+AI L++ A + F +
Sbjct: 163 RYNRLSDEEVLARLLEIIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQSTVA-GFGFVN 221
Query: 575 D 575
D
Sbjct: 222 D 222
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 171 (65.3 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 59/239 (24%), Positives = 105/239 (43%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
EKL W +K++P SLN H ++L + + GN PH+L G G+GK + +AL
Sbjct: 19 EKLHHTPWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALA 78
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYALMGLVKEIRDNLAITPEV 459
E+YG + + VL AS + + ++ A+ + KE N P
Sbjct: 79 KELYGPNLYKSR----VLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPY- 133
Query: 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+I++ E D Q ++ M+ Y + +L C II+ + + C +
Sbjct: 134 --KIIILDEADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKL- 190
Query: 520 VTHEIMEVLIQ-IARKED--FDLSMTFAAKIATKAK---QNLRKAIMALEACKALNYPF 572
+ +E ++ ++ I ++E+ F+ I K +LRKAI L++ L+ F
Sbjct: 191 LNNENAQLRLKYIGQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETF 249
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 171 (65.3 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 55/230 (23%), Positives = 102/230 (44%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ H ++L+ + N PH+L G G+GK + +AL
Sbjct: 32 RLQP-WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKS 90
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYALM---GLVKEIRDNLAITPE 458
++G A + + +L AS + + ++ A+ L GL E + P
Sbjct: 91 LFGPALYRSR----ILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPF 146
Query: 459 VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
+I++ E D + Q ++ M+ Y+ + L C IIE + + C + P
Sbjct: 147 ---KIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKP 203
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ L QIA+ E L K+ + + +LR+AI L++ L
Sbjct: 204 LDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARL 253
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 171 (65.3 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 51/237 (21%), Positives = 101/237 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P++L+ H+ + V PH+L+ G G+GK + +AL IYG
Sbjct: 47 WVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYG-- 104
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
++ VL AS +++ V Q + + + S +I++
Sbjct: 105 --SKNMRQMVLELNASDDRGIDV-VREQIKTFASTKQIFSMAPSATGKSSLASFKLIILD 161
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ IM+ YT + + + + ++ + C + P +I +
Sbjct: 162 EADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVL 221
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA-----DDQPIP 579
+ Q+ KED + + T ++ ++R+A+ L+AC A + P DQ +P
Sbjct: 222 IDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVP 278
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 165 (63.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 51/220 (23%), Positives = 106/220 (48%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK ++ GN P++L+ G G+GK + L E+ G+
Sbjct: 18 WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQ 77
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+K VL AS + +N+ + + KEI +++ P + +I++
Sbjct: 78 A--KK---AVLELNASD----DRGINV---IRDRIKSFAKEI---ISLPPG-KHKIIILD 121
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
EVD Q ++ IM+ Y+D+ + L C II+++++ C +I+ ++++
Sbjct: 122 EVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKR 181
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+++I E+ + + A +LRKA+ L++ A
Sbjct: 182 ILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYA 221
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 165 (63.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 51/220 (23%), Positives = 106/220 (48%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK ++ GN P++L+ G G+GK + L E+ G+
Sbjct: 18 WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQ 77
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+K VL AS + +N+ + + KEI +++ P + +I++
Sbjct: 78 A--KK---AVLELNASD----DRGINV---IRDRIKSFAKEI---ISLPPG-KHKIIILD 121
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
EVD Q ++ IM+ Y+D+ + L C II+++++ C +I+ ++++
Sbjct: 122 EVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKR 181
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+++I E+ + + A +LRKA+ L++ A
Sbjct: 182 ILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYA 221
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 165 (63.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 49/198 (24%), Positives = 89/198 (44%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L P W +K++P+ LN I H +K V G PH+L+ G G+GK + +A+ E
Sbjct: 11 ELTP-WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKE 69
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+YGD K + VL AS + NV +A E +++ + +
Sbjct: 70 LYGD-----KRSSFVLELNASDDRGI--NVIRDQIKTFA------ESKNHYTTCEKTTLK 116
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ IM+ Y + + L C I ++++ C + P
Sbjct: 117 LIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKE 176
Query: 523 EIMEVLIQIARKEDFDLS 540
+ + IA+ E+ +L+
Sbjct: 177 YMKNKALDIAKSENVNLT 194
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 165 (63.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 49/198 (24%), Positives = 89/198 (44%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L P W +K++P+ LN I H +K V G PH+L+ G G+GK + +A+ E
Sbjct: 11 ELTP-WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKE 69
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+YGD K + VL AS + NV +A E +++ + +
Sbjct: 70 LYGD-----KRSSFVLELNASDDRGI--NVIRDQIKTFA------ESKNHYTTCEKTTLK 116
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ IM+ Y + + L C I ++++ C + P
Sbjct: 117 LIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKE 176
Query: 523 EIMEVLIQIARKEDFDLS 540
+ + IA+ E+ +L+
Sbjct: 177 YMKNKALDIAKSENVNLT 194
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 157 (60.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 47/237 (19%), Positives = 109/237 (45%)
Query: 331 ETSFI--QKAVVIEKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQ 387
ETS + Q+ K+R W +K++P +LN I H+ +++ + + PH+L+ G
Sbjct: 2 ETSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGP 61
Query: 388 SGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK 447
G+GK + +A ++Y D +++ + VL AS +++ + G +
Sbjct: 62 PGTGKTSTILACAKQLYKD----KEFGSMVLELNASDDRGIDI-----------IRGPIL 106
Query: 448 EIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
I + ++++ E D + Q ++ +++ +T++ + L C II ++
Sbjct: 107 SFASTRTIFKK-GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL 165
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++ C + P ++ L + +E D+S + T + ++R+A+ L++
Sbjct: 166 QSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQS 222
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 158 (60.7 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 47/217 (21%), Positives = 93/217 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 68 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG-- 125
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P A +ELN + + +K P+ + +I++
Sbjct: 126 ------------PAMKDAV-LELNASNDRGID-VVRNKIKMFAQQKVTLPKGRHKIIILD 171
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +IM
Sbjct: 172 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMR 231
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L ++ KE+ ++ I A+ ++R+A+ L++
Sbjct: 232 LTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQS 268
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 156 (60.0 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 46/231 (19%), Positives = 99/231 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS L+ + H + L + + + PH+L G G+GK +A ++Y
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPT 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
K + VL AS +++ N N GL + + T V ++++
Sbjct: 91 ----KMASMVLELNASDERGIDVVRNTIVNFAQT-KGL--QAFSTSSNTGTVPFKLVILD 143
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ +++ YTD+ + + C I+ ++++ C + P I+
Sbjct: 144 EADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPR 203
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
L I E ++ + +K ++R I L++ A+++ + +
Sbjct: 204 LEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQST-AMSFDTVSENTV 253
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 154 (59.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 48/236 (20%), Positives = 108/236 (45%)
Query: 331 ETSFIQKAV-VIEKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQS 388
ETS Q+ K+R W +K++P +LN I H+ +++ + + PH+L+ G
Sbjct: 2 ETSAQQEQQPAAAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 389 GSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448
G+GK + +A ++Y D +++ + VL AS +++ + G +
Sbjct: 62 GTGKTSTILACAKQLYKD----KEFGSMVLELNASDDRGIDI-----------VRGPILS 106
Query: 449 IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
I + ++++ E D + Q ++ +++ +T++ + L C II +++
Sbjct: 107 FASTRTIFKK-GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQ 165
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ C + P ++ L + +E DLS + T + ++R+A+ L++
Sbjct: 166 SRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQS 221
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 155 (59.6 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 50/224 (22%), Positives = 96/224 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H +LK+ + N PH+L G G+GK + +AL E+YG
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP- 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ +++L AS + + N +A + + K + +L P +I++
Sbjct: 86 ---DLMKSRILELNASDERGISIVREKVKN--FARLTVSKPSKHDLENYPCPPYKIIILD 140
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + ++
Sbjct: 141 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDR 200
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNY 570
L I+ +E+ +I + +LR+ I L+ A K Y
Sbjct: 201 LRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 104 (41.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W +K++P++L + H+ L++ + PH+L G G+GK + +A +IYG
Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Score = 97 (39.2 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 27/125 (21%), Positives = 58/125 (46%)
Query: 446 VKEIRDNLAITPEVSNA---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD 502
V+E N A T ++ + MI++ E D Q ++ +++ YT + + + C
Sbjct: 103 VREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINK 162
Query: 503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562
I ++++ C + P EI + + + + E ++ + +K ++RKA+ L
Sbjct: 163 ISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNIL 222
Query: 563 EACKA 567
+AC A
Sbjct: 223 QACHA 227
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 158 (60.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 49/217 (22%), Positives = 96/217 (44%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + + LK + +GN P+I++ G G GK AL E+ GD
Sbjct: 12 WVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGD- 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
K VL ELN + + + +K PE + +I++
Sbjct: 71 ----KVKEAVL----------ELNASDERGID-VVRHRIKTFAQTKVTLPEGRHKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ YT + + L C IIE +++ C +++ +++
Sbjct: 116 EADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ ++A+ E + I A+ ++R+A+ L+A
Sbjct: 176 VKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQA 212
Score = 37 (18.1 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 618 HPKLILLVMHY 628
HP L++ ++HY
Sbjct: 233 HPDLMIKMLHY 243
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 154 (59.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 48/236 (20%), Positives = 108/236 (45%)
Query: 331 ETSFIQKAV-VIEKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQS 388
ETS Q+ K+R W +K++P +LN I H+ +++ + + PH+L+ G
Sbjct: 2 ETSAQQEQQPAAAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 389 GSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448
G+GK + +A ++Y D +++ + VL AS +++ + G +
Sbjct: 62 GTGKTSTILACAKQLYKD----KEFGSMVLELNASDDRGIDI-----------VRGPILS 106
Query: 449 IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
I + ++++ E D + Q ++ +++ +T++ + L C II +++
Sbjct: 107 FASTRTIFKK-GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQ 165
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ C + P ++ L + +E DLS + T + ++R+A+ L++
Sbjct: 166 SRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQS 221
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 47/217 (21%), Positives = 93/217 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS + + + L+ + DGN P++++ G G+GK +AL HE+ G
Sbjct: 17 WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGT- 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
N K VL AS +++ N +K P + ++++
Sbjct: 76 --NYK--EAVLELNASDDRGIDVVRNK-----------IKMFAQKKVTLPPGRHKVVILD 120
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ ++ Y++S + L C IIE +++ C +++ +I+
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+ + E I A ++R+A+ L+A
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 217
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 47/217 (21%), Positives = 92/217 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 43 WVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLG-- 100
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P A +ELN + + +K P+ + +I++
Sbjct: 101 ------------PALKDAV-LELNASNDRGID-VVRNKIKMFAQQKVTLPKGRHKIIILD 146
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +I+
Sbjct: 147 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILAR 206
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L++I KED + I A+ ++R+A+ L++
Sbjct: 207 LLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQS 243
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 150 (57.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 46/217 (21%), Positives = 91/217 (41%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 36 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG-- 93
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P A +ELN + + +K P+ + +I++
Sbjct: 94 ------------PALKDAV-LELNASNDRGID-VVRNKIKMFAQQKVTLPKGRHKIIILD 139
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +I+
Sbjct: 140 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILAR 199
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+ + KE + I A+ ++R+A+ L++
Sbjct: 200 LLSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQS 236
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 149 (57.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 55/240 (22%), Positives = 105/240 (43%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P + + + L+ + DGN P+I+I G G+GK + + L + G
Sbjct: 22 WVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGA- 80
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
N K + + + +S L+V +A+ K++ P + +I++
Sbjct: 81 --NYK---EAVYELNASDDRT-LDVVRDKIKSFAM----KKVT-----LPAGRHKIIILD 125
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
EVD Q ++ IM+ Y+ + + C IIE +++ C V++ +I+
Sbjct: 126 EVDSMTSGAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTR 185
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-------KALNYPFADDQPIPL 580
L ++ + E + A I A+ ++R+A+ L+A A N DQP PL
Sbjct: 186 LREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPL 245
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 148 (57.2 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 46/217 (21%), Positives = 92/217 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ I H Q + +L+ + PH+L G G+GK + A+ ++YGD
Sbjct: 26 WVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD- 84
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ V Q + M V +I++
Sbjct: 85 ----NYSRMVLELNASDDRGIDV-VREQIKTFASSM---------FFFNTTVPYKLIILD 130
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ +++ YT + + + C + II ++++ C + P T
Sbjct: 131 EADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIR 190
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L +I KE+ + + ++RK + L++
Sbjct: 191 LKEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQS 227
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 148 (57.2 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 45/217 (20%), Positives = 91/217 (41%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 33 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG-- 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P A +ELN + + +K P+ + +I++
Sbjct: 91 ------------PALKDAV-LELNASNDRGID-VVRNKIKMFAQQKVTLPKGRHKIIILD 136
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +++
Sbjct: 137 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSR 196
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+ + KE + I A+ ++R+A+ L++
Sbjct: 197 LMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQS 233
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 147 (56.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/223 (18%), Positives = 103/223 (46%)
Query: 343 KLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
K+R W +K++P +L+ I H+ +++ + + PH+L+ G G+GK + +A
Sbjct: 15 KIRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 74
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
++Y D +++ + VL AS +++ + G + I +
Sbjct: 75 QLYKD----KEFGSMVLELNASDDRGIDI-----------VRGPILSFASTRTIFKK-GF 118
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D + Q ++ +++ +T++ + L C II ++++ C + P
Sbjct: 119 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 178
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++ L + +E D+S + T + ++R+A+ L++
Sbjct: 179 ELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQS 221
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 148 (57.2 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 46/217 (21%), Positives = 91/217 (41%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG-- 95
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P A +ELN + + +K P+ + +I++
Sbjct: 96 ------------PALKDAM-LELNASNDRGID-VVRNKIKMFAQQKVTLPKGRHKIIILD 141
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +I+
Sbjct: 142 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTR 201
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+ + KE + I A+ ++R+A+ L++
Sbjct: 202 LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQS 238
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 40/217 (18%), Positives = 101/217 (46%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ I H+ +++ + + PH+L G G+GK + +A ++Y D
Sbjct: 16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDK 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+N + VL AS +++ + G + I + ++++
Sbjct: 76 EFN----SMVLELNASDDRGIDV-----------VRGPILSFASTRTIFKK-GFKLVILD 119
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ +++ +T++ + L C II ++++ C + P ++++
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPR 179
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L + ++E D++ I T + ++R+++ L++
Sbjct: 180 LEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQS 216
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 147 (56.8 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 40/217 (18%), Positives = 101/217 (46%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L I H+ +++ + + PH+L+ G G+GK + +A ++Y D
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD- 79
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+++ + VL AS +++ + G + I + ++++
Sbjct: 80 ---KEFGSMVLELNASDDRGIDI-----------VRGPILSFASTRTIFKK-GFKLVILD 124
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ +++ +T++ + L C II ++++ C + P ++
Sbjct: 125 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPR 184
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L + ++E+ D+S + T + ++R+A+ L++
Sbjct: 185 LEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQS 221
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 147 (56.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 45/217 (20%), Positives = 91/217 (41%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 33 WVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG-- 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P A +ELN + + +K P+ + +I++
Sbjct: 91 ------------PALKDAV-LELNASNDRGID-VVRNKIKMFAQQKVTLPKGRHKIIILD 136
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +++
Sbjct: 137 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTR 196
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+ + KE + I A+ ++R+A+ L++
Sbjct: 197 LMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQS 233
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 147 (56.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 42/223 (18%), Positives = 103/223 (46%)
Query: 343 KLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
K+R W +K++P +L+ I H+ +++ + + PH+L+ G G+GK + +A
Sbjct: 30 KIRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 89
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
++Y D +++ + VL AS +++ + G + I +
Sbjct: 90 QLYKD----KEFGSMVLELNASDDRGIDI-----------VRGPILSFASTRTIFKK-GF 133
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D + Q ++ +++ +T++ + L C II ++++ C + P
Sbjct: 134 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 193
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++ L + +E D+S + T + ++R+A+ L++
Sbjct: 194 ELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQS 236
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 147 (56.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 56/256 (21%), Positives = 113/256 (44%)
Query: 314 KGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKEL 373
KGS +S + +K + +S +K ++ P W +K++P ++ +LK+
Sbjct: 6 KGSSSQSVKA-QKPSSSSSSGGEKK---QRAVP-WVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 374 VVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433
+ + P++L G G+GK + +A E+YG + ++ VL AS +++ V
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQR----VLELNASDERGIQV-VR 115
Query: 434 LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL 493
+ ++A + + D P +I++ E D Q ++ M+ + + +
Sbjct: 116 EKVK-RFAQLTVAGTRPDGKTCPPF---KIIILDEADSMTSAAQAALRRTMEKESRTTRF 171
Query: 494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553
L C IIE + + C + P E +++I RKE+ + + ++
Sbjct: 172 CLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEG 231
Query: 554 NLRKAIMALEACKALN 569
+LRKAI L++ LN
Sbjct: 232 DLRKAITFLQSGARLN 247
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 146 (56.5 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 40/217 (18%), Positives = 100/217 (46%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L I H+ +++ + + PH+L+ G G+GK + +A ++Y D
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD- 79
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+++ + VL AS +++ + G + I ++++
Sbjct: 80 ---KEFGSMVLELNASDDRGIDI-----------VRGPILSFASTRTIFKR-GFKLVILD 124
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ +++ +T++ + L C II ++++ C + P ++
Sbjct: 125 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPR 184
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L + ++E+ D+S + T + ++R+A+ L++
Sbjct: 185 LEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQS 221
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 145 (56.1 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 51/229 (22%), Positives = 103/229 (44%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+K +P W +K++P ++ +LK+ + + P++L G G+GK + +A
Sbjct: 33 KKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E++G E + +VL AS +++ ++ K V R ++ P
Sbjct: 93 RELFGP----ELFRLRVLELNASDERGIQV---VREKVKNFAQLTVSGSRSEISGKPCPP 145
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ M+ + + + L C IIE + + C + P +
Sbjct: 146 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKP-L 204
Query: 521 THEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +I + L+ IA KE +S A + ++ +LRKAI L++ L
Sbjct: 205 SDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 253
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 144 (55.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 45/217 (20%), Positives = 92/217 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P + + L GN P+I+I G G GK L + GD+
Sbjct: 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDS 77
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ E VL AS+ E +++ N +K P + ++++
Sbjct: 78 -YKEA----VLELNASN----ERGIDVVRNK-------IKMFAQQKVTLPRGRHKIVILD 121
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D E Q ++ M+ Y+ + + L C IIE +++ C +++ +++
Sbjct: 122 EADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAK 181
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
LI++A+ E + + I A+ ++R+ + L++
Sbjct: 182 LIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQS 218
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 144 (55.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 48/230 (20%), Positives = 107/230 (46%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+KL+P W +K++P +++ +LK+ + + P++L G G+GK + +A
Sbjct: 31 KKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAA 90
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEV 459
E++G + ++ VL AS ++ + ++A A+ G R + + P
Sbjct: 91 RELFGPELFRQR----VLELNASDERGIQVIREKVKAFAQLTASGS----RADGKVCPPF 142
Query: 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
++++ E D Q ++ M+ + + + L C IIE + + C + P
Sbjct: 143 K--IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKP- 199
Query: 520 VTHEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
++ +I + L+ ++ KE+ ++ + + + +LRKAI L++ L
Sbjct: 200 LSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRL 249
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 144 (55.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 53/239 (22%), Positives = 104/239 (43%)
Query: 332 TSFIQKAVVIEKLRPFWA--DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSG 389
T+ I A + P ++ +K++P SL + +++ V G PH+L G SG
Sbjct: 7 TNIIVYASLFYDTNPLFSRVEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSG 66
Query: 390 SGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI 449
+GK + +AL EIYG N K +L AS +++ N N K
Sbjct: 67 TGKTSTIIALAKEIYGAT--NYK--NMILELNASDDRGIDVVRNQIKNFASTRQIFTK-- 120
Query: 450 RDNLAITPEVSN-AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
N + T + +I++ E D Q ++ +++ +T +C+ + + ++
Sbjct: 121 --NTSQTASNNQFKLIILDEADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALI 178
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ C + P I + L + KE+ ++S + + ++R+A+ L++CKA
Sbjct: 179 SRCTRFRFTPIDISAIKDRLNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCKA 237
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 144 (55.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 48/230 (20%), Positives = 107/230 (46%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+KL+P W +K++P +++ +LK+ + + P++L G G+GK + +A
Sbjct: 31 KKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAA 90
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEV 459
E++G + ++ VL AS ++ + ++A A+ G R + + P
Sbjct: 91 RELFGPELFRQR----VLELNASDERGIQVIREKVKAFAQLTASGS----RADGKVCPPF 142
Query: 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
++++ E D Q ++ M+ + + + L C IIE + + C + P
Sbjct: 143 K--IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKP- 199
Query: 520 VTHEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
++ +I + L+ ++ KE+ ++ + + + +LRKAI L++ L
Sbjct: 200 LSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRL 249
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 143 (55.4 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 46/217 (21%), Positives = 92/217 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS L+ I H + + PH+L G G+GK + +A ++Y
Sbjct: 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP- 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+++ + VL ELN + + G + I + +I++
Sbjct: 72 ---QQFKSMVL----------ELNASDDRGIGI-VRGQILNFASTRTIFCDTFK-LIILD 116
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ I++ YTD+ + + C II ++++ C + P ++M
Sbjct: 117 EADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPR 176
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L +I E ++ + T AK ++RK + L++
Sbjct: 177 LEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQS 213
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 143 (55.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 51/229 (22%), Positives = 104/229 (45%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+K +P W +K++P ++ +LK+ + + P++L G G+GK + +A
Sbjct: 33 KKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E++G E + +VL AS +++ ++ K V R + P
Sbjct: 93 RELFGP----ELFRLRVLELNASDERGIQV---VREKVKNFAQLTVSGSRSDGKPCPPFK 145
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ M+ + + + L C IIE + + C + P +
Sbjct: 146 --IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKP-L 202
Query: 521 THEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +I + L+ IA+KE+ +S A + ++ +LRKAI L++ L
Sbjct: 203 SDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 251
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 143 (55.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 57/257 (22%), Positives = 113/257 (43%)
Query: 314 KGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPF-WADKHQPSSLNGFICHRHEAQLLKE 372
KG+ +K P K T+ + + +K +P W +K++P ++ +LK+
Sbjct: 6 KGASISTKPPPTKDR-GVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKK 64
Query: 373 LVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432
+ + P++L G G+GK + +A E++G E + +VL AS +++
Sbjct: 65 SLEGADLPNLLFYGPPGTGKTSTILAAARELFGP----ELFRLRVLELNASDERGIQV-- 118
Query: 433 NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCK 492
++ K V R + P ++++ E D Q ++ M+ + + +
Sbjct: 119 -VREKVKNFAQLTVSGSRSDGKPCPPFK--IVILDEADSMTSAAQAALRRTMEKESKTTR 175
Query: 493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV-LIQIARKEDFDLSMTFAAKIATKA 551
L C IIE + + C + P ++ +I + L+ IA KE +S A + +
Sbjct: 176 FCLICNYVSRIIEPLTSRCSKFRFKP-LSDKIQQQRLLDIADKEHVKISNEGIAYLVQVS 234
Query: 552 KQNLRKAIMALEACKAL 568
+ +LRKAI L++ L
Sbjct: 235 EGDLRKAITFLQSATRL 251
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 143 (55.4 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 47/223 (21%), Positives = 97/223 (43%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W + ++P +L+ Q+LK+ ++ N PH+L G G+GK + +AL E++G
Sbjct: 21 WVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGP- 79
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVI 466
+ ++VL AS + + ++ K +A + ++ D P +I++
Sbjct: 80 ---QLMKSRVLELNASDERGISI---IREKVKSFAKTTVTNKV-DGYPCPPF---KIIIL 129
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D + Q ++ M+ Y + L C II+ + + C + P +++
Sbjct: 130 DEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVK 189
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L IA + + + + ++RKAI L++ L+
Sbjct: 190 RLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLH 232
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 143 (55.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 51/229 (22%), Positives = 104/229 (45%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+K +P W +K++P ++ +LK+ + + P++L G G+GK + +A
Sbjct: 33 KKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E++G E + +VL AS +++ ++ K V R + P
Sbjct: 93 RELFGP----ELFRLRVLELNASDERGIQV---VREKVKNFAQLTVSGSRSDGKPCPPFK 145
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ M+ + + + L C IIE + + C + P +
Sbjct: 146 --IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKP-L 202
Query: 521 THEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +I + L+ IA+KE+ +S A + ++ +LRKAI L++ L
Sbjct: 203 SDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 251
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 49/218 (22%), Positives = 95/218 (43%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W K++P +++ LK+ + GN PH+L G G+GK + +A+ +IYG
Sbjct: 12 WVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPE 71
Query: 408 CWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
++ VL AS +E+ ++ A YA V + + P + +I++
Sbjct: 72 LMKQR----VLELNASDERGIEVVRTKIKNFAGYA----VNKTTTGTS-NPGATFKLIIL 122
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ ++ + + + L C II+ + + C + P T +E
Sbjct: 123 DEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIE 182
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L I+++E + I + ++RKAI L++
Sbjct: 183 RLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQS 220
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 42/212 (19%), Positives = 88/212 (41%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 36 WVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLG-- 93
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P A +ELN + + +K P+ + +I++
Sbjct: 94 ------------PALKDAV-LELNASNDRGID-VVRNKIKMFAQQKVTLPKGRHKIIILD 139
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +++
Sbjct: 140 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLAR 199
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAI 559
L+ + +E + + A+ ++R+A+
Sbjct: 200 LLTVLEQEKVPYTDDGLEAVIFTAQGDMRQAL 231
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 138 (53.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 42/212 (19%), Positives = 88/212 (41%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 48 WVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLG-- 105
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P A +ELN + + +K P+ + +I++
Sbjct: 106 ------------PALKDAV-LELNASNDRGID-VVRNKIKMFAQQKVTLPKGRHKIIILD 151
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +++
Sbjct: 152 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLAR 211
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAI 559
L+ + +E + + A+ ++R+A+
Sbjct: 212 LLTVLEQEKVPYTDDGLEAVIFTAQGDMRQAL 243
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 138 (53.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 50/229 (21%), Positives = 103/229 (44%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+K++P W +K++P ++ +LK+ + + P++L G G+GK + +A
Sbjct: 33 KKVKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E++G E + +VL AS +++ ++ K V R + P
Sbjct: 93 RELFGP----ELFRLRVLELNASDERGIQV---VREKVKNFAQLTVSGSRSDGKPCPPFK 145
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ M+ + + + L C IIE + + C + P +
Sbjct: 146 --IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKP-L 202
Query: 521 THEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +I + L+ IA KE+ + A + ++ +LRKAI L++ L
Sbjct: 203 SDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRL 251
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 137 (53.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 51/229 (22%), Positives = 102/229 (44%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+K +P W +K++P ++ +LK+ + + P++L G G+GK + +A
Sbjct: 32 KKTKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAA 91
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E++G E + +VL AS +++ ++ K V R + P
Sbjct: 92 RELFGP----ELFRLRVLELNASDERGIQV---VREKVKNFAQLTVSGSRSDGKPCPPFK 144
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ M+ + + + L C IIE + + C + P +
Sbjct: 145 --IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKP-L 201
Query: 521 THEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +I + L+ IA KE +S A + ++ +LRKAI L++ L
Sbjct: 202 SDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRL 250
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 136 (52.9 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 50/229 (21%), Positives = 103/229 (44%)
Query: 342 EKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+K++P W +K++P ++ +L++ + + P++L G G+GK + +A
Sbjct: 33 KKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E++G E + +VL AS +++ ++ K V R + P
Sbjct: 93 RELFGP----ELFRLRVLELNASDERGIQV---VREKVKNFAQLTVSGSRSDGKPCPPFK 145
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ M+ + + + L C IIE + + C + P +
Sbjct: 146 --IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKP-L 202
Query: 521 THEIM-EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +I E L+ IA KE+ + A + ++ +LRKAI L++ L
Sbjct: 203 SDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRL 251
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 136 (52.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 48/223 (21%), Positives = 96/223 (43%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
K P W +K++P SL+ HR + L + PH+L+ G G+GK + +A+ +
Sbjct: 37 KATP-WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARK 95
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
+YG K+ +L AS +++ +Q A L K S
Sbjct: 96 LYGP-----KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKS-----------SV 139
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D + Q+ ++ +++ YT S + L II ++++ C + P
Sbjct: 140 KLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDG 199
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ + L + E +S A + + ++RKA+ L++
Sbjct: 200 VHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQS 242
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 103 (41.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W +K++P +L+ +++ V +G PH+L G G+GK + +AL EIYG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72
Score = 72 (30.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 32/168 (19%), Positives = 73/168 (43%)
Query: 415 TQVLVPVASSAHHVEL-NVNLQANAKYAL-MGLVK-EIRDNLAITPEVSNA---MIVIYE 468
T +V +A + N+ L+ NA + +V+ +I+D A T ++ + +I++ E
Sbjct: 60 TSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKD-FASTRQIFSKGFKLIILDE 118
Query: 469 VDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVL 528
D Q ++ +++ YT + + + + ++ + C + P I +
Sbjct: 119 ADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Query: 529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-LNYPFADD 575
+ E LS + + ++R+ + L++CKA L+ P D+
Sbjct: 179 ANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDE 226
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 129 (50.5 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 47/224 (20%), Positives = 95/224 (42%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +++ + +L++ V G+ P++L+ G G+GK + +A +I+GD
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDM 91
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++L AS + NV ++ K +R + P +I++
Sbjct: 92 -----FKDRILELNASDERGI--NV-VRTKIKNFSQLSASSVRPDGKPCPPFK--IIILD 141
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ + S + L C II + + C + ++++
Sbjct: 142 EADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDR 201
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
L I E + I + +LR+AI L++C L P
Sbjct: 202 LKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGP 245
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
Identities = 47/235 (20%), Positives = 107/235 (45%)
Query: 335 IQKAVVIEKLRP---FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSG 391
+++ + ++ RP W +K++P +L+ +LK + + PH+L G G+G
Sbjct: 1 MEEPMEVDNKRPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTG 60
Query: 392 KRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYALMGLVKEIR 450
K + A+A +++ ++++ VL AS + + +Q+ +K +L +E
Sbjct: 61 KTSAALAFCRQLFPKNIFHDR----VLDLNASDERGIAVVRQKIQSFSKSSLGHSHRE-- 114
Query: 451 DNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
D L + +I++ EVD Q ++ +++ ++ + + IL C +I V +
Sbjct: 115 DVLKLK------IIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSR 168
Query: 511 CKVIKVDP-PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
C + P ++ L I E +S ++ ++ +LR+A+ L++
Sbjct: 169 CAKFRFKSLPAEIQVQR-LRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQS 222
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
Identities = 47/235 (20%), Positives = 107/235 (45%)
Query: 335 IQKAVVIEKLRP---FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSG 391
+++ + ++ RP W +K++P +L+ +LK + + PH+L G G+G
Sbjct: 1 MEEPMEVDNKRPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTG 60
Query: 392 KRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYALMGLVKEIR 450
K + A+A +++ ++++ VL AS + + +Q+ +K +L +E
Sbjct: 61 KTSAALAFCRQLFPKNIFHDR----VLDLNASDERGIAVVRQKIQSFSKSSLGHSHRE-- 114
Query: 451 DNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
D L + +I++ EVD Q ++ +++ ++ + + IL C +I V +
Sbjct: 115 DVLKLK------IIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSR 168
Query: 511 CKVIKVDP-PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
C + P ++ L I E +S ++ ++ +LR+A+ L++
Sbjct: 169 CAKFRFKSLPAEIQVQR-LRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQS 222
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 118 (46.6 bits), Expect = 0.00040, P = 0.00040
Identities = 40/189 (21%), Positives = 79/189 (41%)
Query: 376 DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ 435
+GN P+I+I G G+GK + L + G P A +ELN +
Sbjct: 7 EGNVPNIIIAGPPGTGKTTSILCLARALLG--------------PALKDAV-LELNASND 51
Query: 436 ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLIL 495
+ +K P+ + +I++ E D + Q ++ M+ Y+ + + L
Sbjct: 52 RGID-VVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFAL 110
Query: 496 CCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL 555
C IIE +++ C V++ +I+ L+ + KE + I A+ ++
Sbjct: 111 ACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDM 170
Query: 556 RKAIMALEA 564
R+A+ L++
Sbjct: 171 RQALNNLQS 179
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 629 587 0.00083 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 76
No. of states in DFA: 625 (66 KB)
Total size of DFA: 330 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.76u 0.12s 51.88t Elapsed: 00:00:03
Total cpu time: 51.78u 0.12s 51.90t Elapsed: 00:00:03
Start: Fri May 10 04:32:07 2013 End: Fri May 10 04:32:10 2013