BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036742
(629 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297735132|emb|CBI17494.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 355/676 (52%), Positives = 449/676 (66%), Gaps = 68/676 (10%)
Query: 1 MESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLP 60
ME+S+RY R S H P K +SGYEPSDTETDWQ+SPW D N NG S LP
Sbjct: 1 MENSTRYGRTSLPHF---PPSKSRRSGYEPSDTETDWQDSPWRDRNETNG---PLRSELP 54
Query: 61 RNISTSLS-----TSSVRHALKIDKDDRFGSPPKFSSPARRRQS------------SKLS 103
R L S RH+ KI+ D + +SP RRR S S+ S
Sbjct: 55 RTPFDPLPKISPMIPSRRHSSKIEYDASSSTKASGTSPTRRRHSKSPYKPHKGEAVSRTS 114
Query: 104 EKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKFEA 163
E+PN + R+ +AP+ + +K+++ N+ + Q+ T S L ++ R+Q E K +
Sbjct: 115 ERPNSSHRSASAPRTKAA--EKDRQINYGRLEQRSERT-PSPLAKSTARKQIESSPK-KG 170
Query: 164 PTIGELNEMVASAKMFQGPITTTNAALRFESTDS--IGDIFFSRDGFA---------KNG 212
P++ E+N MVA+ ++ +G + + +F+STDS GDIFFS D A KN
Sbjct: 171 PSVSEINVMVATERLARGGVRDFS---KFDSTDSNLPGDIFFSHDYTALALQKNVLQKNN 227
Query: 213 GVQADV--HPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSS 270
++ +P P +RN +++ SR N + S + P++ VSR+SS
Sbjct: 228 VFESRFPSNPNPNTITKRNLATNQRSRGNDIFYQNTQGNLSSTVLSGTAPSS-AVSRESS 286
Query: 271 NGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFD 330
G+ S+E SK S AS S KF NRRK+ +DAWF+CM+KG C K++ SPEKR D
Sbjct: 287 -GRVSTESSKMSDAS----GSLKKFTANRRKS-HSDAWFACMRKGPC-KTRKSPEKRDVD 339
Query: 331 ETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGS 390
ETSFIQKA+V+E LR FWADKH+P+SLNGF H+ EAQLLK+LV CPH+L KG SGS
Sbjct: 340 ETSFIQKALVVENLRQFWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGS 399
Query: 391 GKRALAMALLHEIYGDACWN-----------EKWPTQVLVPVASSAHHVELNVNLQANAK 439
GK+AL MALL EIYGDA WN EK P QV+VP+ SSAHHVELNVNL+ A+
Sbjct: 400 GKKALTMALLREIYGDASWNISHELRSFHVQEKRPMQVVVPLTSSAHHVELNVNLEPYAR 459
Query: 440 YALMGLVKEIRDNLAITPEVSN----AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLIL 495
+ALM +VK+IR N ITPE + +++V+YEVDKAAE+IQYLIKWIMD YTD+C+LI+
Sbjct: 460 HALMAIVKQIRSNCEITPEHGSILLISVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIM 519
Query: 496 CCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL 555
CCEDDVD++ESVK CKVIK++ PVTHEIMEVLIQIARKEDFDL M+FAAKIATK+KQ+L
Sbjct: 520 CCEDDVDVLESVKNRCKVIKLEAPVTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDL 579
Query: 556 RKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
RKAIMALEACKA NYPF DDQPIPLGWEEVL+ELAAE+L DPSP RL +RGKIQKLL +
Sbjct: 580 RKAIMALEACKAHNYPFLDDQPIPLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVD 639
Query: 616 FVHPKLIL--LVMHYI 629
FVHPKLIL LV ++
Sbjct: 640 FVHPKLILQKLVEQFL 655
>gi|255561098|ref|XP_002521561.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223539239|gb|EEF40832.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 779
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 318/532 (59%), Positives = 378/532 (71%), Gaps = 29/532 (5%)
Query: 114 TAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVSKF-EAPTIGELNEM 172
TAP++R R KEQENN QKE + SS R +QRE S PT+GE+NEM
Sbjct: 197 TAPRMRG--RVKEQENNLGPGEQKEE-RAPSSFLRTTTSKQRERESSHPRTPTVGEINEM 253
Query: 173 VASAKMFQGPITTTNAALRFESTDSI--GDIFFSRDGFA---------KNGGVQADVHPR 221
VA+ KM + P+ A FEST+SI GDIFFSRD A KNG + + PR
Sbjct: 254 VANIKMSRSPMLN---APNFESTESISPGDIFFSRDHTALTIQKKNLPKNGNDKTNPIPR 310
Query: 222 PVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSSEGSKT 281
P F Q +S+ H S +N+ + R + T + +GKFSSE SK
Sbjct: 311 PTRFTQMDSAGHQVSTNNNN--TENKSSRTLMSSGSRTTTITSSALSGHSGKFSSESSKI 368
Query: 282 SYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVI 341
S S +S SS +F NR+K+ QAD WFSCM++G CR ++ SPEK DE SFI+KA V+
Sbjct: 369 SDTSKTTSVSSKRFTENRKKS-QADGWFSCMRRGPCR-TRKSPEKHHLDEVSFIEKAFVV 426
Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
E LR FWADKHQPSSL+GFICH+ EAQLLK+LV N PHIL+KG SGSGKR+LAMALL
Sbjct: 427 ESLRQFWADKHQPSSLSGFICHKQEAQLLKQLVFHNNIPHILLKGPSGSGKRSLAMALLC 486
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
EI+G AC NE+ QV VP+ASSAHH+ELNVNL+ NAK+ALM LV+EI +N A+ PEVSN
Sbjct: 487 EIFGGACRNEERAMQVAVPIASSAHHLELNVNLEPNAKHALMSLVREISNNYALAPEVSN 546
Query: 462 A-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
A ++V+Y+VDKAAE IQ+LIKWIMD YTD+CKLILCCEDD DI+E V C+VI
Sbjct: 547 ATFKPDYKVLVLYQVDKAAEDIQHLIKWIMDCYTDACKLILCCEDDADILEPVTNRCRVI 606
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
KVD PVTHEIMEVLIQIARKE+F+L M FAA+IA K+KQ+LRKAIM LEACK NYPFAD
Sbjct: 607 KVDSPVTHEIMEVLIQIARKEEFELPMNFAARIAAKSKQHLRKAIMTLEACKEHNYPFAD 666
Query: 575 DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
DQPIP WEEVLIELAAEIL+DPSPKRL MVRGK QKLL +FVHPKLILL +
Sbjct: 667 DQPIPSSWEEVLIELAAEILSDPSPKRLFMVRGKFQKLLLDFVHPKLILLKL 718
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 63/108 (58%), Gaps = 15/108 (13%)
Query: 1 MESSS-RYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGG----DLAD 55
M+S+S RY+RAS +S P+KQ +SGYEPSDTETDWQESP D + NG
Sbjct: 5 MKSTSFRYNRAS--QPFASNPLKQRRSGYEPSDTETDWQESPNRDRSHTNGAFGPQSPKM 62
Query: 56 DSNLPRNISTSLSTSSVRHALKIDKDDRFGSPPKFS--SPARRRQSSK 101
D LPRNIS VRH ++ SP K S SP+RRR SSK
Sbjct: 63 DLVLPRNISP------VRHGWRLSPRLDDSSPKKDSTTSPSRRRHSSK 104
>gi|359476885|ref|XP_003631905.1| PREDICTED: uncharacterized protein LOC100852980 [Vitis vinifera]
Length = 766
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 311/552 (56%), Positives = 395/552 (71%), Gaps = 37/552 (6%)
Query: 100 SKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREVVS 159
S+ SE+PN + R+ +AP+ + +K+++ N+ + Q+ T S L ++ R+Q E
Sbjct: 177 SRTSERPNSSHRSASAPRTKAA--EKDRQINYGRLEQRSERT-PSPLAKSTARKQIESSP 233
Query: 160 KFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDS--IGDIFFSRDGFA-------- 209
K + P++ E+N MVA+ ++ +G + + +F+STDS GDIFFS D A
Sbjct: 234 K-KGPSVSEINVMVATERLARGGVRDFS---KFDSTDSNLPGDIFFSHDYTALALQKNVL 289
Query: 210 -KNGGVQADV--HPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVS 266
KN ++ +P P +RN +++ SR N + S + P++ VS
Sbjct: 290 QKNNVFESRFPSNPNPNTITKRNLATNQRSRGNDIFYQNTQGNLSSTVLSGTAPSS-AVS 348
Query: 267 RQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEK 326
R+SS G+ S+E SK S AS S KF NRRK+ +DAWF+CM+KG C K++ SPEK
Sbjct: 349 RESS-GRVSTESSKMSDAS----GSLKKFTANRRKS-HSDAWFACMRKGPC-KTRKSPEK 401
Query: 327 RAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKG 386
R DETSFIQKA+V+E LR FWADKH+P+SLNGF H+ EAQLLK+LV CPH+L KG
Sbjct: 402 RDVDETSFIQKALVVENLRQFWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKG 461
Query: 387 QSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV 446
SGSGK+AL MALL EIYGDA WNEK P QV+VP+ SSAHHVELNVNL+ A++ALM +V
Sbjct: 462 PSGSGKKALTMALLREIYGDASWNEKRPMQVVVPLTSSAHHVELNVNLEPYARHALMAIV 521
Query: 447 KEIRDNLAITPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499
K+IR N ITPEVSN ++V+YEVDKAAE+IQYLIKWIMD YTD+C+LI+CCED
Sbjct: 522 KQIRSNCEITPEVSNVDFKADYKVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCED 581
Query: 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAI 559
DVD++ESVK CKVIK++ PVTHEIMEVLIQIARKEDFDL M+FAAKIATK+KQ+LRKAI
Sbjct: 582 DVDVLESVKNRCKVIKLEAPVTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAI 641
Query: 560 MALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHP 619
MALEACKA NYPF DDQPIPLGWEEVL+ELAAE+L DPSP RL +RGKIQKLL +FVHP
Sbjct: 642 MALEACKAHNYPFLDDQPIPLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVDFVHP 701
Query: 620 KLIL--LVMHYI 629
KLIL LV ++
Sbjct: 702 KLILQKLVEQFL 713
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 1 MESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSNLP 60
ME+S+RY R S H P K +SGYEPSDTETDWQ+SPW D N NG S LP
Sbjct: 1 MENSTRYGRTSLPHF---PPSKSRRSGYEPSDTETDWQDSPWRDRNETNG---PLRSELP 54
Query: 61 RNISTSLS-----TSSVRHALKIDKDDRFGSPPKFSSPARRRQS 99
R L S RH+ KI+ D + +SP RRR S
Sbjct: 55 RTPFDPLPKISPMIPSRRHSSKIEYDASSSTKASGTSPTRRRHS 98
>gi|449451671|ref|XP_004143585.1| PREDICTED: uncharacterized protein LOC101218071 [Cucumis sativus]
Length = 713
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 323/675 (47%), Positives = 437/675 (64%), Gaps = 80/675 (11%)
Query: 21 MKQNKSGYEPSDTETDWQESPWHDHNAK----NGGDLADDSNLPRNISTS-------LST 69
MKQ K GYEPSDTET+WQESPW+D K + + DS +P+ S + L
Sbjct: 8 MKQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRTDSAVPKKFSMAANVSPPGLRR 67
Query: 70 SSVRHALKIDKDD-------------------RFGSPPKFS------SPARRRQ------ 98
+ + + KDD R SP K S S R R+
Sbjct: 68 NGGKTPRRPAKDDSVLVMLQRNISPLSRAERRRHESPFKASGEEIGSSSMRSRKEEKFTY 127
Query: 99 ---SSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQR 155
S+K S+KP+Y+RR++TAP+LR ++D+ + + ++ER +A +L + I +Q
Sbjct: 128 SHGSNKTSQKPSYSRRSVTAPRLR--MKDEHMIAANDLSQRRER--AAPTLKVSSILQQP 183
Query: 156 EVVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRDGF----- 208
+ VS ++P+IGE+NE++A ++ +G + + + EST SI GDIFFSRDG
Sbjct: 184 KEVSHAKSPSIGEMNELIADGRINRG-LALNDPVV--ESTGSISPGDIFFSRDGLPVGMN 240
Query: 209 ----AKNGGVQADVHPRPVIFPQRNSSSHHESRSNS-GLGIDQTPQRPSLPIPPITPANL 263
AK + + P+P ++N ++++ N+ G G+ T + T ++
Sbjct: 241 NNVTAKRNAFKNYISPKPTFVTKKNDDTYNQVEVNANGRGVSST----GGGLSTTTNSSA 296
Query: 264 VVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSS 323
VSR++S+ + S E SK S S ++S S+ +F NRRK + D WFSCM+ G+CR +KS
Sbjct: 297 AVSRENSS-RISLENSKISDVSGRTSESTRRFIANRRKK-KNDIWFSCMRNGTCRTTKS- 353
Query: 324 PEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHIL 383
PEKR FDE ++I+KA V+E L+PFWAD+H+P SLNGF H+HEAQLLK+LV + PHIL
Sbjct: 354 PEKRPFDEATYIEKANVVEYLKPFWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHIL 413
Query: 384 IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM 443
KG GSGKR L MALL EIYGD+CWNE+ TQV VP+ SSAHHVELN++ ++NAKYAL+
Sbjct: 414 FKGPRGSGKRVLMMALLREIYGDSCWNERKLTQVFVPLTSSAHHVELNLSSESNAKYALL 473
Query: 444 GLVKEIRDNLAITPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILC 496
GL KEI +I E N ++V+ +VDKA E IQ+L++WIMDGY D+CK++LC
Sbjct: 474 GLAKEIGSEYSINVEARNVNPKAIFKVVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLC 533
Query: 497 CEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR 556
CEDD I+ESV + CKVIK++PPVTHEIM+VLI+IA KE+FDL M FA+KIATKAKQNLR
Sbjct: 534 CEDDSGILESVISRCKVIKINPPVTHEIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLR 593
Query: 557 KAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEF 616
KAIMALEACKA NYPF+DDQPIP+GWE+ L+ELA+ IL DPS RL V+ KIQKLL +
Sbjct: 594 KAIMALEACKAHNYPFSDDQPIPIGWEDALVELASHILEDPSNPRLHQVKEKIQKLLVDS 653
Query: 617 VHPKLIL--LVMHYI 629
VHPKLIL LV ++
Sbjct: 654 VHPKLILQKLVEQFL 668
>gi|449528029|ref|XP_004171009.1| PREDICTED: uncharacterized LOC101218071 [Cucumis sativus]
Length = 723
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 322/674 (47%), Positives = 436/674 (64%), Gaps = 80/674 (11%)
Query: 22 KQNKSGYEPSDTETDWQESPWHDHNAK----NGGDLADDSNLPRNISTS-------LSTS 70
KQ K GYEPSDTET+WQESPW+D K + + DS +P+ S + L +
Sbjct: 9 KQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRTDSAVPKKFSMAANVSPPGLRRN 68
Query: 71 SVRHALKIDKDD-------------------RFGSPPKFS------SPARRRQ------- 98
+ + KDD R SP K S S R R+
Sbjct: 69 GGKTPRRPAKDDSVLVMLQRNISPLSRAERRRHESPFKASGEEIGSSSMRSRKEEKFTYS 128
Query: 99 --SSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQRE 156
S+K S+KP+Y+RR++TAP+LR ++D+ + + ++ER +A +L + I +Q +
Sbjct: 129 HGSNKTSQKPSYSRRSVTAPRLR--MKDEHMIAANDLSQRRER--AAPTLKVSSILQQPK 184
Query: 157 VVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRDGF------ 208
VS ++P+IGE+NE++A ++ +G + + + EST SI GDIFFSRDG
Sbjct: 185 EVSHAKSPSIGEMNELIADGRINRG-LALNDPVV--ESTGSISPGDIFFSRDGLPVGMNN 241
Query: 209 ---AKNGGVQADVHPRPVIFPQRNSSSHHESRSNS-GLGIDQTPQRPSLPIPPITPANLV 264
AK + + P+P ++N ++++ N+ G G+ T + T ++
Sbjct: 242 NVTAKRNAFKNYISPKPTFVTKKNDDTYNQVEVNANGRGVSST----GGGLSTTTNSSAA 297
Query: 265 VSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSP 324
VSR++S+ + S E SK S S ++S S+ +F NRRK + D WFSCM+ G+CR +KS P
Sbjct: 298 VSRENSS-RISLENSKISDVSGRTSESTRRFIANRRKK-KNDIWFSCMRNGTCRTTKS-P 354
Query: 325 EKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILI 384
EKR FDE ++I+KA V+E L+PFWAD+H+P SLNGF H+HEAQLLK+LV + PHIL
Sbjct: 355 EKRPFDEATYIEKANVVEYLKPFWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILF 414
Query: 385 KGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMG 444
KG GSGKR L MALL EIYGD+CWNE+ TQV VP+ SSAHHVELN++ ++NAKYAL+G
Sbjct: 415 KGPRGSGKRVLMMALLREIYGDSCWNERKLTQVFVPLTSSAHHVELNLSSESNAKYALLG 474
Query: 445 LVKEIRDNLAITPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC 497
L KEI +I E N ++V+ +VDKA E IQ+L++WIMDGY D+CK++LCC
Sbjct: 475 LAKEIGSEYSINVEARNVNPKAIFKVVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLCC 534
Query: 498 EDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRK 557
EDD I+ESV + CKVIK++PPVTHEIM+VLI+IA KE+FDL M FA+KIATKAKQNLRK
Sbjct: 535 EDDSGILESVISRCKVIKINPPVTHEIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLRK 594
Query: 558 AIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFV 617
AIMALEACKA NYPF+DDQPIP+GWE+ L+ELA+ IL DPS RL V+ KIQKLL + V
Sbjct: 595 AIMALEACKAHNYPFSDDQPIPIGWEDALVELASHILEDPSNPRLHQVKEKIQKLLVDSV 654
Query: 618 HPKLIL--LVMHYI 629
HPKLIL LV ++
Sbjct: 655 HPKLILQKLVEQFL 668
>gi|356540777|ref|XP_003538861.1| PREDICTED: uncharacterized protein LOC100795321 [Glycine max]
Length = 731
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 330/694 (47%), Positives = 438/694 (63%), Gaps = 107/694 (15%)
Query: 4 SSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDHNAKN-------GGDLADD 56
S R RAS +SS+ ++ +SGYEPSDTET+WQE P H+ +N L +
Sbjct: 24 SFRNHRASI--PNSSSFFRKGRSGYEPSDTETEWQEIPRHERERRNFTLEETKAFTLMNK 81
Query: 57 ----------SNLPRNISTSLSTSSVRH------ALKIDKDD----------------RF 84
S +S++ + S RH L++ ++D R
Sbjct: 82 SPMALHRRHPSRFEHEVSSASTASRRRHHSKSPYKLRVAEEDVTVAASSSPITGLNTKRN 141
Query: 85 GSP------PKFSSPARRRQSSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKE 138
SP + SP R ++ EKP+Y +R++TAP+LR QE+N+ E
Sbjct: 142 ISPLPRPDLGRTVSPFREQR----IEKPHY-KRSVTAPRLRI------QESNNGGRTINE 190
Query: 139 RITSASSLPRNPIRRQREVVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI 198
+ +QRE S FEAP++G +NEM+A K+ + P + ++ L ESTDSI
Sbjct: 191 M-----------VHKQRE-ASPFEAPSVGIINEMIAQVKLSKDPTSDYSSVL--ESTDSI 236
Query: 199 --GDIFFSRDGF---AKNGGVQADVH------PRPVIFPQRNSSSHHESRSNSGLGIDQT 247
GD+FFSR+ AKN + + PRP + R S ES+ N+G
Sbjct: 237 HPGDLFFSRECNALQAKNSSLPRRIQQCEYFSPRPPVNTTRIPS---ESKGNNG------ 287
Query: 248 PQRPSLPIPPITPANLVVSRQSSNGKFSSEG---SKTSYASVKSSTSSTKFANNRRKTGQ 304
++ + ++ +N +S +++ K S G S TS AS K++ S KF NR+K Q
Sbjct: 288 --DINMKMNILSRSNTGLSSAATSRKGSDTGKPSSVTSEASGKTTASMKKFTANRKK-NQ 344
Query: 305 ADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHR 364
D WFSCMK G+CR +K SPE+R DE+SFI+KAVV+E L FWADKHQP+SLNGFIC++
Sbjct: 345 KDTWFSCMKTGNCRTTKKSPERRPIDESSFIEKAVVVESLPQFWADKHQPASLNGFICNK 404
Query: 365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424
HEAQLLKELV G+CPHIL+ G SGSGKR LAMA+L EIYGDAC N++ +V VP+ SS
Sbjct: 405 HEAQLLKELVSQGSCPHILLLGPSGSGKRELAMAILREIYGDACCNDQRLKKVSVPITSS 464
Query: 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN-------AMIVIYEVDKAAEHIQ 477
+HH+EL+VN + NAKYALMGL+KEI + AI PEVSN +IV+Y+V KA ++IQ
Sbjct: 465 SHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYDVHKAVDNIQ 524
Query: 478 YLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDF 537
++IKWI+D Y+D CKL+LCCEDD D+IE VK KVI+VD P HEI+EVLIQIA+ E+
Sbjct: 525 HIIKWIIDRYSDICKLVLCCEDDADLIEPVKNRFKVIQVDAPQNHEIIEVLIQIAKNEEI 584
Query: 538 DLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADP 597
DLS+ FAAKIATK+KQNLRKAIMALEAC A NYPF+++QPIP+GWEE++IE+AAEILADP
Sbjct: 585 DLSVNFAAKIATKSKQNLRKAIMALEACNAHNYPFSEEQPIPVGWEEIVIEVAAEILADP 644
Query: 598 SPKRLVMVRGKIQKLLAEFVHPKLIL--LVMHYI 629
S RL+ +RGK Q LL +FVHPKLIL LV H +
Sbjct: 645 SFSRLLSIRGKFQMLLLDFVHPKLILQKLVEHLL 678
>gi|356495392|ref|XP_003516562.1| PREDICTED: uncharacterized protein LOC100817775 [Glycine max]
Length = 718
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 315/665 (47%), Positives = 420/665 (63%), Gaps = 75/665 (11%)
Query: 22 KQNKSGYEPSDTETDWQESPWHDHNAKNGG-DLADDSNLPRNISTSLSTSSVRHALKIDK 80
K+ +SGYEPSDTE++ QE P H+ +N + D L +L RH + +
Sbjct: 19 KKGRSGYEPSDTESERQEIPRHERERRNFTLEETKDFTLMNKSPMALHR---RHPSRFEN 75
Query: 81 DDRFGSPPKFSSPARRRQSSK-------------------LSEKP--NYNRRAMTAPKLR 119
+ S +S RRR SK S P N R +P R
Sbjct: 76 EVSSASTASTASAPRRRHHSKSPYKLRVAEANVAVAVAGVASSSPIIGLNTRRNISPLSR 135
Query: 120 PVL-------RDKEQENNH---AIVGQKERITSASSLPRN--PIRRQREVVSKFEAPTIG 167
P + R++ E H ++ + RI +++ R + RQRE S F+AP++G
Sbjct: 136 PDIGRTVSPFREQRIEKPHYKRSVTAPRLRIQESNNGGRTNEKVNRQRE-ASPFKAPSVG 194
Query: 168 ELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRD--GF-AKNGGVQADVH--- 219
E+NEM+A K+ Q P + ++ L ESTDSI GD+FFSR+ F AKN + +
Sbjct: 195 EINEMIAQVKLSQDPTSDYSSVL--ESTDSIHPGDLFFSRECNAFQAKNSSLPRRIEQRE 252
Query: 220 ---PRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSS 276
PRP + R S ++ + ++ ++ + V+S +++ K S
Sbjct: 253 HFSPRPPVNTTRVPSERKGKNADIKMNMNI-----------LSRSTTVLSTSATSRKGSG 301
Query: 277 EG---SKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETS 333
G S TS S K++ S KF NR+K Q D WFSCM+ G+CR ++ SPE+R DE+S
Sbjct: 302 TGKPSSVTSEGSGKTTESMRKFTANRKK-NQKDTWFSCMRTGNCRTTRKSPERRPIDESS 360
Query: 334 FIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKR 393
FI++AVV+E L FWADKH+P+SLNGFIC+R EAQLLKELV G+CPHIL++G SGSGKR
Sbjct: 361 FIERAVVVESLPQFWADKHEPASLNGFICNRQEAQLLKELVSQGSCPHILLQGPSGSGKR 420
Query: 394 ALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL 453
LAMALL EIYGDAC N++ +V VP+ SS+HH+EL+VN ++NAKYALMGL+KEI +
Sbjct: 421 ELAMALLREIYGDACCNDQRLKKVSVPITSSSHHMELDVNSESNAKYALMGLIKEISNIY 480
Query: 454 AITPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
A+ PEVSN +IV+Y+V KA ++I+++IKWI+D Y+D CKL+LCCEDD DIIE
Sbjct: 481 AVAPEVSNINFKSDFKVIVLYDVHKAVDNIRHIIKWIIDRYSDICKLVLCCEDDADIIEH 540
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
VK KVI+VD P HEI+EVLIQIA+ E+ DLSM FAAKIATK+KQNLRKAIMALEACK
Sbjct: 541 VKNRFKVIQVDAPQNHEIIEVLIQIAKNEEIDLSMNFAAKIATKSKQNLRKAIMALEACK 600
Query: 567 ALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL--L 624
A NYPF+ +QPIP+GWEE++IE+AAEILADPS RL+ +RGK Q LL +FVHPKLIL L
Sbjct: 601 AHNYPFSAEQPIPVGWEEIVIEVAAEILADPSFSRLLSIRGKFQMLLLDFVHPKLILQKL 660
Query: 625 VMHYI 629
V H +
Sbjct: 661 VGHLL 665
>gi|224094813|ref|XP_002310247.1| predicted protein [Populus trichocarpa]
gi|222853150|gb|EEE90697.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 304/561 (54%), Positives = 387/561 (68%), Gaps = 38/561 (6%)
Query: 98 QSSKLSEKPNYNRRAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLPRNPIRRQREV 157
+ S+LSE+ N +RR APK R + DKEQ ++H QK + + S R++
Sbjct: 306 EDSRLSERQNASRRMAAAPKQR--VWDKEQVSSHDHKEQKGGRSPSPSSRSMSRRQRERE 363
Query: 158 VSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRD----GFAKN 211
VS +A ++GELNE+VA+ K+ + + FEST+SI GDIFFS D G KN
Sbjct: 364 VSHAKAASVGELNEIVANIKLSKDSMLDVP---NFESTESISPGDIFFSVDQTALGMQKN 420
Query: 212 GGVQ----ADVHPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPP--ITPANLVV 265
G ++ +++ +P FP +S ++ N ID QR S +T +
Sbjct: 421 GILKDNNVTNLYLKPASFPHMDSVLLQRNKVNGN--IDHNSQRTSTTSSGSRMTMTSASA 478
Query: 266 SRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCRKSKSSPE 325
+ + S+ K SS+ SK S AS ++S S KF NR+K Q +AWFSC+KKG C+ SKS P
Sbjct: 479 ASRQSSSKLSSDSSKISDASGRTSGSLKKFTENRKKK-QTEAWFSCLKKGPCKTSKS-PG 536
Query: 326 KRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIK 385
K+ DETSFI+KA V+E LR FWADKHQP SLNGF CH+HEAQ+L +LV + PHIL+K
Sbjct: 537 KKRCDETSFIEKAFVVESLRQFWADKHQPGSLNGFTCHKHEAQILGQLVSHDSIPHILLK 596
Query: 386 GQSGSGKRALAMALLHEIYGDACWN----------EKWPTQVLVPVASSAHHVELNVNLQ 435
G SGSGK+ALAMAL+ +I+GDACW+ ++ QV+VP+ SSAHH E+NVNL+
Sbjct: 597 GPSGSGKKALAMALIGDIFGDACWHKTHDLRYFQEQRGAAQVVVPITSSAHHAEINVNLE 656
Query: 436 ANAKYALMGLVKEIRDNLAITPEVSNA-------MIVIYEVDKAAEHIQYLIKWIMDGYT 488
NAK ALMGLVKEIR+ AITP+ SN ++V+YEVDKA E+IQ L+KWIMD YT
Sbjct: 657 PNAKTALMGLVKEIRNTYAITPDFSNVNFKPDYKVLVLYEVDKAPENIQPLMKWIMDCYT 716
Query: 489 DSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIA 548
D+CKLILCCEDD DI+E+VK CKV+KVD PVTHEIMEVLIQIARKE+FDL M FAAKIA
Sbjct: 717 DACKLILCCEDDSDILETVKNRCKVLKVDAPVTHEIMEVLIQIARKEEFDLPMNFAAKIA 776
Query: 549 TKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGK 608
K+KQNLRKAIMALEACKA NYPF+DDQPIP GWEEVL+ELA EIL DPSP +L RGK
Sbjct: 777 AKSKQNLRKAIMALEACKAHNYPFSDDQPIPFGWEEVLVELATEILIDPSPNKLFSARGK 836
Query: 609 IQKLLAEFVHPKLILLVMHYI 629
+++LL +FV+PKLILL ++
Sbjct: 837 LKRLLVDFVNPKLILLKYTFL 857
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 14 HSHSSAPMKQNKSGYEPSDTETDWQESPWHDH-NAKNGGDLADDSNLPRNISTSLSTSSV 72
H H +KQ +SGYEPSDTETDWQ+SP D N G + +LPRN+S +S
Sbjct: 15 HPHLVNVLKQRRSGYEPSDTETDWQDSPRRDQKNGAFGPESPIQLDLPRNVSP--LKNSR 72
Query: 73 RHALKIDKDDRFGSPPK--FSSPARRRQSSKLSEKPNY-NRRAMTAPKLR---PVLR 123
R + + D SP K SSP RRR SSK KP NR + P R P+LR
Sbjct: 73 RFSSRFDD----YSPKKDSVSSPPRRRHSSKSPYKPQRDNRSSEPIPNQRNVDPLLR 125
>gi|357483535|ref|XP_003612054.1| Replication factor C subunit [Medicago truncatula]
gi|355513389|gb|AES95012.1| Replication factor C subunit [Medicago truncatula]
Length = 733
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 313/692 (45%), Positives = 412/692 (59%), Gaps = 100/692 (14%)
Query: 22 KQNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDS------------------------ 57
K+ +SGYEPSDTET+WQ++P H+ KN L+ +
Sbjct: 21 KKGRSGYEPSDTETEWQDTPRHERGRKNNMTLSPEETKALYLRNKSPMTLHKRHPSRFEF 80
Query: 58 -------------NLPRNISTSLSTSSVRHA----LKIDKDDRFGSPPKFSSPARRRQSS 100
N PR S S R A +D +D S + RR S
Sbjct: 81 EVPSSPSITGSVLNQPRRRHLSKSPYRPRVAHDNHYDVDGNDDDASLTNITGVNSRRNMS 140
Query: 101 KLSEKPNYNRRAMTAPKLRPVLRDKEQ-----ENNHAI--------VGQKERITSASSLP 147
L +P+ R L P R++EQ EN A VG K A + P
Sbjct: 141 PLP-RPDIGR------TLSPYNRNREQRAPYNENRKASSGLLEMDRVGTKSNYKRAVTAP 193
Query: 148 RNPIRRQREVV------------SKFEAPTIG--ELNEMVASAKMFQGPITTTNAALRFE 193
R +R Q++ V S F+ + E+NEM+A K+ + P ++AL E
Sbjct: 194 R--LRDQQQTVQNTARTLKQREKSPFKTGLVKEREINEMIAEVKLSKNPTDDYSSAL--E 249
Query: 194 STDSI--GDIFFSRDGF---AKNGGVQADVH------PRPVIFPQRNSSSHHESRSNSGL 242
STDSI GD+FFSR+ AKN + V PR VI ++ ES G+
Sbjct: 250 STDSIQTGDLFFSRECNALQAKNSSMPKKVQQYEYFSPRQVITTINPITNPCES-GKHGM 308
Query: 243 GIDQTPQRPSLPIPPITPANLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKT 302
++ S + T A + + S GK S+ S S AS K++ S KF +NR+K
Sbjct: 309 NMNMPRNYSSNVLLSRTSAATSIRKGSGTGKPSANSSVKSDASTKTTESMRKFTSNRKK- 367
Query: 303 GQADAWFSC-MKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFI 361
Q DAWF+C M+ G+CR S+ SPE+R DE S I++A+++E + WADKH+P+SL+GFI
Sbjct: 368 NQKDAWFACMMRTGNCRISRKSPERRPIDEASLIERAIIVESIPQLWADKHKPASLDGFI 427
Query: 362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421
C++ EAQLLKELV G+CPHIL+KG SGSGKR LAMA L EIYGDAC N+K +V VP+
Sbjct: 428 CNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREIYGDACCNDKRTMKVSVPI 487
Query: 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-------MIVIYEVDKAAE 474
SS+HH+E+NVN + NAKYALMGL+KEI + AITPEVSN +I+IY+V+KAAE
Sbjct: 488 TSSSHHMEVNVNSEPNAKYALMGLIKEISNIYAITPEVSNVNFKSDYKVIIIYDVEKAAE 547
Query: 475 HIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK 534
+IQ+LIKWI+D Y+D CKL+LCCEDD +II VK KVI VD P THEI+EVL QIA K
Sbjct: 548 NIQHLIKWIIDRYSDICKLVLCCEDDENIIAQVKNRFKVINVDAPQTHEIIEVLTQIANK 607
Query: 535 EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEIL 594
E+ DLSM FA KIATK+KQNLR+AI+ALEAC+A NYPF+++QPIP+GWE+++IE+A EIL
Sbjct: 608 EEMDLSMNFAMKIATKSKQNLREAILALEACRAHNYPFSEEQPIPVGWEKIVIEVATEIL 667
Query: 595 ADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
DPS RL+ +RGK Q LL +FVHP+LILL +
Sbjct: 668 TDPSFSRLLSIRGKFQMLLLDFVHPRLILLKL 699
>gi|413923603|gb|AFW63535.1| hypothetical protein ZEAMMB73_411986 [Zea mays]
Length = 740
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 273/682 (40%), Positives = 386/682 (56%), Gaps = 109/682 (15%)
Query: 23 QNKSGYEPSDTETDWQESPWHDHNAKNGGDLADDSN-LPR-------------NISTSLS 68
++KSGYEPSDTET+W ESPW+D G LA + N LP+ NIS + +
Sbjct: 21 KHKSGYEPSDTETEWHESPWND------GALASNRNRLPKDSGRNDQVGTRRQNISPNCT 74
Query: 69 -------TSSVRHAL---KIDKDDRFGSP----------PKFSSPARRRQS----SKLSE 104
TS++R++ ++ + R SP +P R R S S+ S
Sbjct: 75 LDYHAEKTSNLRYSRTPPRVTEQRRHPSPFTAVKNESRKKSSRTPPRFRSSMETFSRSSI 134
Query: 105 KPNYNR-RAMTAPKLRPVLRDKEQENNHAIVGQKERITSASSLP-RNPIRR--QREVVSK 160
K ++R R+++APKLRP +KE A + P NP+ +REV
Sbjct: 135 KARFSRNRSISAPKLRP--------------QEKEHPARAPAFPGSNPVSTHPEREVADN 180
Query: 161 FEAPTIG-----ELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRDGFAKNGG 213
E + E++E++A+ K+ P + N F ST+SI GDIFFSRD A
Sbjct: 181 IEEDSHAENCSQEISELIANGKL---PNSRYN-EYAFTSTESIPAGDIFFSRDCRAPLEK 236
Query: 214 VQADVHPRPVIFPQRNSSSHHE-----SRSNSG---------LGIDQTPQRPSLPIPPIT 259
++ F +S+ H E ++SN G G+ +T + S
Sbjct: 237 TSTKLNNIDQSFTS-DSNVHTENDGTVTQSNLGQPSQFVSARTGLSRTTTKSSYATGRHC 295
Query: 260 PANLVVSRQS--SNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSC 317
+ + S SNGK S E K S + K KF +++ Q D W CM +C
Sbjct: 296 QMSTTTTLSSPYSNGKLSGESGKFSEITGKLVGGVMKFTSSK---VQNDTWLPCMTGKAC 352
Query: 318 RKSKSSPEKRAFD-ETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVD 376
RKS++S K+ + E+SFIQKA+VIEK+R FWADK++P +LNGF CHR + Q LK+ V
Sbjct: 353 RKSRTSNNKKNDESESSFIQKALVIEKIRLFWADKYRPQNLNGFTCHREQVQQLKQSVSA 412
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWN-----------EKWPTQVLVPVASSA 425
CPHI+ KG GSGKR+L A+L EI+GD+ N +LVPV+SS
Sbjct: 413 EFCPHIIFKGPPGSGKRSLCRAVLTEIFGDSSLNVSHYLKSCNGQGSISVPILVPVSSSN 472
Query: 426 HHVELNVNLQA-NAKYALMGLVKEIRDNLAITPEV---SNAMIVIYEVDKAAEHIQYLIK 481
+HVEL++ Q+ NA+YALM L E+ D IT + S +IV+Y+VDK +++ Q LIK
Sbjct: 473 NHVELHMRFQSKNARYALMTLANEMSDKCKITEPIVRKSFKVIVLYDVDKVSQNNQRLIK 532
Query: 482 WIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM 541
WI+D +D+CK+I+ C+D+ ++++S+K+ CK+I + P T E++++L +RKE FDL
Sbjct: 533 WIIDSSSDACKIIMTCQDESNLLDSIKSRCKIISIGVPSTREVVDILTYTSRKESFDLPT 592
Query: 542 TFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKR 601
+FA IA ++++NLR+AI+ALEACKA NYPF D Q IPLGWEEVL ELA EIL DP+PKR
Sbjct: 593 SFATTIANQSRKNLREAILALEACKANNYPFIDGQAIPLGWEEVLEELAVEILDDPAPKR 652
Query: 602 LVMVRGKIQKLLAEFVHPKLIL 623
L + RGK+QKLL EFV PKLIL
Sbjct: 653 LFLARGKLQKLLVEFVPPKLIL 674
>gi|218191427|gb|EEC73854.1| hypothetical protein OsI_08618 [Oryza sativa Indica Group]
Length = 729
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 265/692 (38%), Positives = 376/692 (54%), Gaps = 100/692 (14%)
Query: 2 ESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDH---NAKNGGDLADDSN 58
E SS ++R HS + + K KSGYEPSDTET+W ESPW+D + +N A N
Sbjct: 5 ERSSGHNR----HSRNDSSTKH-KSGYEPSDTETEWHESPWNDAVLPSGRNTQIGARRQN 59
Query: 59 LPRNISTSL---STSSVRHALKIDKDDRFGSPPKFSSPARRRQSSKLSEKPNYNRRAMTA 115
L N + TS++R++ +PP+F+ + S + + T
Sbjct: 60 LSPNHTREYPNEKTSNLRNSR---------TPPRFTEQVHQNSSHSGGKNELRKKSNRTP 110
Query: 116 PKLRPVLRD------KEQ-ENNHAIVGQKERITSASSLPRNPIRRQREVVSKF----EAP 164
P+ RP + KE+ N +I K R PR P ++SK A
Sbjct: 111 PRFRPSMESFSRSSIKEKFSQNRSISTPKLRPHEKEHPPRAPAFLGTNLISKQGEMDSAD 170
Query: 165 TIGE----------LNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRD------ 206
I E +NE++A+ K P + N ST+SI GDIFFSRD
Sbjct: 171 NIKEDSHAENCSQEINELIANGKW---PNSRYNE-YACTSTESIPTGDIFFSRDCRAPIQ 226
Query: 207 ----------------GFAKNGGVQADVHPRPVIFPQRNSSSHHESRS--NSGLGIDQTP 248
A+N G +A+ + P+ S+ SR+ NS G +
Sbjct: 227 RTPTKHNNDKSLTSETARAENYGTEANSN-NLAQTPKSISAQTGLSRTIRNSNYGTSRHT 285
Query: 249 QRPSLPIPPITPANLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAW 308
Q + +S Q ++G++S + K S + K KF +N +K Q D+W
Sbjct: 286 Q---------INSGATLSSQFNSGRYSGDSGKFSDFTGKLVGGVMKFTSNMQK-AQNDSW 335
Query: 309 FSCMKKGSCRKSKSSPEKRAFDET--SFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHE 366
C+ +CRK KS P + DE+ SFIQKA+V+E +R FWADK++P +L GF CHR +
Sbjct: 336 LPCVTGKTCRKPKS-PNSKTTDESESSFIQKALVVENIRLFWADKYRPRTLGGFTCHREQ 394
Query: 367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ---------- 416
+ LK+LV CPHI+ KG GSGK +L A++ EI+GD+ N +
Sbjct: 395 IEQLKQLVSTEFCPHIIFKGPPGSGKSSLCRAVVTEIFGDSSLNVSHYLKSCSGQGSTSM 454
Query: 417 -VLVPVASSAHHVELNVNLQA-NAKYALMGLVKEIRDNLAIT-PEVSNA--MIVIYEVDK 471
VLVP++SS HH+ELN+ + NA Y LM L EI + T P V +IV+Y+VDK
Sbjct: 455 PVLVPLSSSDHHMELNLRYYSKNAGYVLMDLANEITNKKKTTDPSVRKKFKVIVLYDVDK 514
Query: 472 AAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQI 531
+E Q LIKW++D +D+ K+++ C+D+ I++S+K+ CK+I + P T EI+++L I
Sbjct: 515 VSESNQRLIKWMIDSSSDTHKILMTCQDESHILDSMKSRCKLICIGVPNTREIVDILTYI 574
Query: 532 ARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA 591
++KE FDL +FAA IA++++QN+R+AI+ALEACKA NYPF D Q IPLGWE VL E+AA
Sbjct: 575 SKKESFDLPSSFAATIASQSRQNMREAILALEACKANNYPFIDGQAIPLGWENVLQEIAA 634
Query: 592 EILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
EIL DPSPKRL +VRGK+QKLL EFV PKLIL
Sbjct: 635 EILDDPSPKRLFLVRGKLQKLLVEFVPPKLIL 666
>gi|222623516|gb|EEE57648.1| hypothetical protein OsJ_08080 [Oryza sativa Japonica Group]
Length = 691
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 253/681 (37%), Positives = 359/681 (52%), Gaps = 116/681 (17%)
Query: 2 ESSSRYSRASTLHSHSSAPMKQNKSGYEPSDTETDWQESPWHDH---NAKNGGDLADDSN 58
E SS ++R HS + + K KSGYEPSDTET+W ESPW+D + +N A N
Sbjct: 5 ERSSGHNR----HSRNDSSTKH-KSGYEPSDTETEWHESPWNDAVLPSGRNTQIGARRQN 59
Query: 59 LPRNISTSL---STSSVRHALKIDKDDRFGSPPKFSSPARRRQSSKLSEKPNYNRRAMTA 115
L N + TS++R++ +PP+F+ + S + + T
Sbjct: 60 LSPNHTREYPNEKTSNLRNSR---------TPPRFTEQVHQNSSHSGGKNELRKKSNRTP 110
Query: 116 PKLRPVLRD------KEQ-ENNHAIVGQKERITSASSLPRNPIRRQREVVSKF----EAP 164
P+ RP + KE+ N +I K R PR P ++SK A
Sbjct: 111 PRFRPSMESFSRSSIKEKFSQNRSISTPKLRPHEKEHPPRAPAFLGTNLISKQGEMDSAD 170
Query: 165 TIGE----------LNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRD------ 206
I E +NE++A+ K P + N ST+SI GDIF SRD
Sbjct: 171 NIKEDSHAENCSQEINELIANGKW---PNSRYNE-YACTSTESIPTGDIF-SRDCRAPIQ 225
Query: 207 ----------------GFAKNGGVQADVHPRPVIFPQRNSSSHHESRS--NSGLGIDQTP 248
A+N G +A+ + P+ S+ SR+ NS G +
Sbjct: 226 RTPTKHNNDKSLTSETARAENYGTEANSN-NLAQTPKSISAQTGLSRTIRNSNYGTSRHT 284
Query: 249 QRPSLPIPPITPANLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAW 308
Q + +S Q ++G++S + K S + K KF +N +K Q D+W
Sbjct: 285 Q---------INSGATLSSQFNSGRYSGDSGKFSDFTGKLVGGVMKFTSNMQK-AQNDSW 334
Query: 309 FSCMKKGSCRKSKSSPEKRAFDET--SFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHE 366
C+ +CRK KS P + DE+ SFIQKA+V+E +R FWADK++P +L GF CHR +
Sbjct: 335 LPCVTGKTCRKPKS-PNSKTTDESESSFIQKALVVENIRLFWADKYRPRTLGGFTCHREQ 393
Query: 367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH 426
+ LK+LV H L K SG G ++ VLVP++SS H
Sbjct: 394 IEQLKQLV-----SHYL-KSCSGQGSTSMP--------------------VLVPLSSSDH 427
Query: 427 HVELNVNLQA-NAKYALMGLVKEIRDNLAIT-PEVSNA--MIVIYEVDKAAEHIQYLIKW 482
H+ELN+ + NA Y LM L EI + T P V +IV+Y+VDK +E Q LIKW
Sbjct: 428 HMELNLRYYSKNAGYVLMDLANEITNKKKTTDPSVRKKFKVIVLYDVDKVSESNQRLIKW 487
Query: 483 IMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT 542
++D +D+ K+++ C+D+ I++S+K+ CK+I + P T EI+++L I++KE FDL +
Sbjct: 488 MIDSSSDTHKILMTCQDESHILDSMKSRCKLICIGVPNTREIVDILTYISKKESFDLPSS 547
Query: 543 FAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRL 602
FAA IA++++QN+R+AI+ALEACKA NYPF D Q IPLGWE VL E+AAEIL DPSPKRL
Sbjct: 548 FAATIASQSRQNMREAILALEACKANNYPFIDGQAIPLGWENVLQEIAAEILDDPSPKRL 607
Query: 603 VMVRGKIQKLLAEFVHPKLIL 623
+VRGK+QKLL EFV PKLIL
Sbjct: 608 FLVRGKLQKLLVEFVPPKLIL 628
>gi|302806064|ref|XP_002984782.1| hypothetical protein SELMODRAFT_121188 [Selaginella moellendorffii]
gi|302808301|ref|XP_002985845.1| hypothetical protein SELMODRAFT_234901 [Selaginella moellendorffii]
gi|300146352|gb|EFJ13022.1| hypothetical protein SELMODRAFT_234901 [Selaginella moellendorffii]
gi|300147368|gb|EFJ14032.1| hypothetical protein SELMODRAFT_121188 [Selaginella moellendorffii]
Length = 354
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 183/293 (62%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ I H+ +AQ LK L+ +G+CPH+L G SG+GK+ L MA L E++G
Sbjct: 2 LWVDKYRPHTLDEAIVHQEQAQRLKSLIAEGDCPHLLFYGPSGAGKKTLIMAFLRELFGA 61
Query: 407 ACW-----NEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN- 452
N+ W + V + +S +HVELN + +Y + ++KE+ +
Sbjct: 62 GAQQVQVENKAWKVEAGTRKIDVELTTVASNYHVELNPSDAGFQDRYVVQEIIKEMAMSR 121
Query: 453 -LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
L + ++S ++V+ EVD+ ++ Q+ ++ M+ Y+ +C+LILCC +IE+V++ C
Sbjct: 122 PLDLGVDISFKVLVLNEVDRLSKEAQHSLRRTMEKYSAACRLILCCTSASKVIEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P EI +VL +A+KE+ L FA +IA + +NLR+AI++LEACK YP
Sbjct: 182 LNVRINAPSEDEITKVLQFVAKKEEIRLPPAFAGRIALHSNRNLRRAILSLEACKVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F ++QP+ WE+ ++E+A++I+ + SPKRL +VRGK+ +LL + P+++L
Sbjct: 242 FTENQPVQTTDWEQYIVEIASDIVNEQSPKRLFIVRGKLYELLVNCIPPEIVL 294
>gi|297812933|ref|XP_002874350.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
gi|297320187|gb|EFH50609.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 359
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 175/296 (59%), Gaps = 16/296 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL+ I H AQ LK+LV + +CPH+L G SGSGK+ L MALL +IYG
Sbjct: 2 LWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYGA 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ N W + + SS +HVEL + +Y + ++KE+ N
Sbjct: 62 SAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E++K+ C
Sbjct: 122 PIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P EI++VL +A+KE L FAA+IA K+ ++LR+AI++LE C+ NYP
Sbjct: 182 LNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
F +Q I P+ WEE + E+A +++ + SPK+L VRGK+ +LL + P++IL M
Sbjct: 242 FTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKFM 297
>gi|15241031|ref|NP_198126.1| replication factor C subunit 3/5 [Arabidopsis thaliana]
gi|18389268|gb|AAL67077.1| putative replication factor C [Arabidopsis thaliana]
gi|20259637|gb|AAM14175.1| putative replication factor C [Arabidopsis thaliana]
gi|332006337|gb|AED93720.1| replication factor C subunit 3/5 [Arabidopsis thaliana]
Length = 354
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 174/293 (59%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL+ I H AQ LK+LV + +CPH+L G SGSGK+ L MALL +IYG
Sbjct: 2 LWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGA 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ N W + + SS +HVEL + +Y + ++KE+ N
Sbjct: 62 SAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E++K+ C
Sbjct: 122 PIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P EI++VL +A+KE L FAA+IA K+ ++LR+AI++LE C+ NYP
Sbjct: 182 LNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +Q I P+ WEE + E+A +++ + SPK+L VRGK+ +LL + P++IL
Sbjct: 242 FTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVIL 294
>gi|224162034|ref|XP_002338404.1| predicted protein [Populus trichocarpa]
gi|222872086|gb|EEF09217.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/272 (48%), Positives = 175/272 (64%), Gaps = 20/272 (7%)
Query: 152 RRQRE-VVSKFEAPTIGELNEMVASAKMFQGPITTTNAALRFESTDSI--GDIFFSRD-- 206
RRQRE VS +A ++GELNE+VA+ K+ + + FEST+SI GDIFFS D
Sbjct: 3 RRQREREVSHAKAASVGELNEIVANIKLSKDSMLDVP---NFESTESISPGDIFFSVDQT 59
Query: 207 --GFAKNGGVQ----ADVHPRPVIFPQRNSSSHHESRSNSGLGIDQTPQRPSLPIPP--I 258
G KNG ++ +++ +P FP +S ++ N ID QR S +
Sbjct: 60 ALGMQKNGILKDNNVTNLYLKPASFPHMDSVLLQRNKVNGN--IDHNSQRTSTTSSGSRM 117
Query: 259 TPANLVVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQADAWFSCMKKGSCR 318
T + + + S+ K SS+ SK S AS ++S S KF NR+K Q +AWFSC+KKG C+
Sbjct: 118 TMTSASAASRQSSSKLSSDSSKISDASGRTSGSLKKFTENRKKK-QTEAWFSCLKKGPCK 176
Query: 319 KSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGN 378
SKS P K+ DETSFI+KA V+E LR FWADKHQP SLNGF CH+HEAQ+L +LV +
Sbjct: 177 TSKS-PGKKRCDETSFIEKAFVVESLRQFWADKHQPGSLNGFTCHKHEAQILGQLVSHDS 235
Query: 379 CPHILIKGQSGSGKRALAMALLHEIYGDACWN 410
PHIL+KG SGSGK+ALAMAL+ +I+GDACW+
Sbjct: 236 IPHILLKGPSGSGKKALAMALIGDIFGDACWH 267
>gi|294464282|gb|ADE77654.1| unknown [Picea sitchensis]
Length = 354
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 176/293 (60%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL+ HR A LK LV + +CPH+L G SG+GK+ L MALL +I+G
Sbjct: 2 LWVDKYRPRSLDKISVHREIANNLKNLVSEHDCPHLLFYGPSGAGKKTLIMALLKQIFGP 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N+ W + V + SS HHVELN + +Y + ++KE+ +
Sbjct: 62 GAEKVKVENKPWKIEAGTRTIDVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKEMAKSR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ EVDK ++ Q+ ++ M+ Y+ +C++ILCC+ ++E+V++ C
Sbjct: 122 PIDVNGTKGFKVLVLNEVDKLSKEAQHSLRRTMEIYSGACRIILCCDSVSKVLEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+++ P +I++VL IA+KE L M F +IA ++ +NLR+AI+ EACK YP
Sbjct: 182 LNIRINSPSKEQIVDVLEYIAKKEGLQLPMGFTGRIAQQSNRNLRRAILCFEACKVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F D+QP L WE+ + E+A++I+ + SPKRL MVRGKI +LL + P+++L
Sbjct: 242 FTDNQPAQTLDWEQYISEIASDIVNEQSPKRLYMVRGKIYELLVNCIPPEVVL 294
>gi|115455849|ref|NP_001051525.1| Os03g0792600 [Oryza sativa Japonica Group]
gi|28269436|gb|AAO37979.1| putative replication factor [Oryza sativa Japonica Group]
gi|108711507|gb|ABF99302.1| Activator 1 38 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|113549996|dbj|BAF13439.1| Os03g0792600 [Oryza sativa Japonica Group]
gi|125546006|gb|EAY92145.1| hypothetical protein OsI_13856 [Oryza sativa Indica Group]
gi|215737314|dbj|BAG96243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765336|dbj|BAG87033.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625948|gb|EEE60080.1| hypothetical protein OsJ_12910 [Oryza sativa Japonica Group]
Length = 354
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 171/292 (58%), Gaps = 16/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H AQ LK+LV + +CPH+L G SGSGK+ L MAL+ +++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGA 61
Query: 407 AC-----WNEKWPT-------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N+ W ++ + + SSAHHVE+N + +Y + ++KE+ N
Sbjct: 62 GADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + A ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V+ P +I++VL I +KE+ L FAA+IA ++ +NLR+AI+ E CK YP
Sbjct: 182 LNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLI 622
F +Q PL WE+ + E+AA+I+ + SPKRL VR K +LL + P+ I
Sbjct: 242 FTSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESI 293
>gi|388499612|gb|AFK37872.1| unknown [Lotus japonicus]
Length = 354
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 173/293 (59%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + H AQ LK+LV + +CPH+L G SGSGK+ L MALL +++G
Sbjct: 2 LWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGT 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
A N W + + SSAHH+E++ + +Y + ++KE+ N
Sbjct: 62 AAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ +VDK + Q+ ++ M+ Y+ C+LILCC + E++++ C
Sbjct: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+++ P +I+EV+ I +KE + FAA+IA K+ +NLR+AI++ E C+ YP
Sbjct: 182 LNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F + Q I P+ WEE + E+A++I+ + +PKRL VRGK+ +LL + P++IL
Sbjct: 242 FTNRQTIPPMDWEEYISEIASDIMKEQNPKRLFQVRGKLYELLINCIPPEMIL 294
>gi|30314657|dbj|BAC76086.1| replication factor C 38 kDa subunit [Oryza sativa Japonica Group]
Length = 354
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 171/292 (58%), Gaps = 16/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H AQ LK+LV + +CPH+L G SGSGK+ L MAL+ +++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGA 61
Query: 407 AC-----WNEKWPT-------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N+ W ++ + + SSAHHVE+N + +Y + ++KE+ N
Sbjct: 62 GADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + A ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDVKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V+ P +I++VL I +KE+ L FAA+IA ++ +NLR+AI+ E CK YP
Sbjct: 182 LNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLI 622
F +Q PL WE+ + E+AA+I+ + SPKRL VR K +LL + P+ I
Sbjct: 242 FTSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESI 293
>gi|326488121|dbj|BAJ89899.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 354
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 171/293 (58%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DKH+P +L+ I H AQ LK+ V + +CPH+L G GSGK+ L MAL+ +++G
Sbjct: 2 LWVDKHRPKTLDKVIVHEQVAQNLKKFVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFGA 61
Query: 406 --------DACWNEKWPTQVL---VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ W T+ + + SS+HHVE+N + +Y + ++KE+ +
Sbjct: 62 GVDKVKMENKTWKIDTGTRTFDLELAMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKSR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + A ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V+ P +I++VL I +KE+ L FAA+IA ++ +NLR+AI+ E CK YP
Sbjct: 182 LNVRVNAPTEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F+ +Q PL WE+ + E+A EIL++ SPKRL VR K +LL + P+ IL
Sbjct: 242 FSANQVAPPLDWEQYVSEIATEILSEQSPKRLYSVRQKFYELLVNCIPPESIL 294
>gi|449453820|ref|XP_004144654.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]
gi|449521275|ref|XP_004167655.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]
Length = 354
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 175/298 (58%), Gaps = 16/298 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H+ AQ LK+LV + +CPH+L G SGSGK+ L MAL+ +++G
Sbjct: 2 LWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGP 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ N+ W + + SSA+HVEL + +Y + ++KE+ N
Sbjct: 62 SADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
Query: 454 AITPE--VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + + ++V+ +VDK + Q+ ++ M+ Y+ C+LILCC + E++++ C
Sbjct: 122 PIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P +I +VL I +KE L FA++IA K+ ++LR+AI++ E C+ YP
Sbjct: 182 LNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
F +Q I P+ WEE + E+A+EI+ + SPKRL VRGK+ +LL + P++IL + Y
Sbjct: 242 FVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 299
>gi|168028662|ref|XP_001766846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681825|gb|EDQ68248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 175/293 (59%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + H+ EA LK L+ G+CPH+L G SG+GK+ L MALL E++G
Sbjct: 2 LWVDKYRPRTLDKVMVHKEEATNLKNLIAQGDCPHLLFYGPSGAGKKTLIMALLREMFGS 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN- 452
+ N+ W + V + SS HHVELN + +Y + ++K++ N
Sbjct: 62 SAEKVKVENKPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMAKNR 121
Query: 453 -LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
L + ++V+ EVDK ++ Q+ ++ M+ Y+ +C+L+LCC +IE+V++ C
Sbjct: 122 PLDVAGNRGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+++ P +I++VL+ +A+KE+ L A +IA + +NLR++I+ LEACKA YP
Sbjct: 182 VNIRINSPSRDDIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DQ + WE+ ++ LA +I+ + SPK+L VR K+ +LL + P++IL
Sbjct: 242 FTADQEVQTTDWEQFIVGLANDIVTEQSPKKLFQVREKLYELLVNCIPPEVIL 294
>gi|225439256|ref|XP_002263213.1| PREDICTED: probable replication factor C subunit 3 [Vitis vinifera]
gi|296089274|emb|CBI39046.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 172/292 (58%), Gaps = 16/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DK++P +L+ I H AQ LK+LV + +CPH+L G GSGK+ L MA+L +++G
Sbjct: 2 LWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFGP 61
Query: 406 --------DACWNEKWPTQVL---VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ W T+ + + SS HH+ELN + +Y + ++KE+ N
Sbjct: 62 SADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ EVD+ + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+++ P +I +VL IA+KE L FA +IA K+ ++LR+AI++ E C+ YP
Sbjct: 182 LNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLI 622
F ++Q + P+ WEE + E+A++I+ + SPKRL VRGK+ +LL + P++I
Sbjct: 242 FTNNQAMPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEII 293
>gi|357112071|ref|XP_003557833.1| PREDICTED: replication factor C subunit 3-like [Brachypodium
distachyon]
Length = 354
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 171/293 (58%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DKH+P +L+ H AQ LK+LV + +CPH+L G GSGK+ L MAL+ +++G
Sbjct: 2 LWVDKHRPKALDKVTVHEQVAQNLKKLVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFGA 61
Query: 406 --------DACWNEKWPTQVL---VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ W T+ + + SS+HHVE+N + +Y + ++KE+ +
Sbjct: 62 GAEKVKMENKTWKIDTGTRTFDLELVMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKSR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + A ++++ EVDK + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDAKGKRAFKVLILNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V+ P +I++VL I +KE+ L FAA+IA ++ +NLR+AI+ E CK YP
Sbjct: 182 LNVRVNAPTEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYP 241
Query: 572 FADDQ-PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +Q P PL WE+ + E+A +IL++ SPKRL VR K +LL + P+ IL
Sbjct: 242 FTSNQVPPPLDWEKYVSEIATDILSEQSPKRLYSVRQKFYELLVNCIPPESIL 294
>gi|255569436|ref|XP_002525685.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223534985|gb|EEF36668.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 173/296 (58%), Gaps = 21/296 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + H AQ LK+LV + +CPH+L G SGSGK+ L MALL +I+G
Sbjct: 2 LWVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGP 61
Query: 407 A-----CWNEKW-------PTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRD 451
+ N+ W V + SS+HH+E+ +V Q +Y + ++K++
Sbjct: 62 SAEKVKVENKTWKIDAGSRTIDVELTTLSSSHHIEMSPGDVGFQD--RYIVQEVIKDMAK 119
Query: 452 NLAITPEVSNA---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
N + ++V+ EVDK + Q+ ++ M+ Y+ C+LILCC + E+++
Sbjct: 120 NRPLVDAKGRKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIR 179
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C +++ P +I++VL I +KE L FAA++A K+ ++LR+A+++ E C+
Sbjct: 180 SRCLNVRISAPSEEQIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQ 239
Query: 569 NYPFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
YPF +QPI P+ WEE + E+A++I+ + SPK+L VRGK+ +LL + P +IL
Sbjct: 240 QYPFTSNQPIPPMDWEEYVSEIASDIMREQSPKKLFQVRGKLYELLINCIPPDIIL 295
>gi|224146053|ref|XP_002325862.1| predicted protein [Populus trichocarpa]
gi|222862737|gb|EEF00244.1| predicted protein [Populus trichocarpa]
Length = 353
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 174/292 (59%), Gaps = 16/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ I H+ A+ LK+LV + +CPH+L G SGSGK+ L MALL +I+G
Sbjct: 2 LWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGT 61
Query: 407 A-----CWNEKW-------PTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ N W + + SS +HVEL+ ++ +Y + ++KE+ N
Sbjct: 62 SAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E++++ C
Sbjct: 122 PIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P +I++VL I +KE L FAA+IA K+ ++LR+AI++ E C+ YP
Sbjct: 182 LNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLI 622
F+ +Q I P+ WEE + E+ ++I+ + SPKRL VRGK+ +LL + P++I
Sbjct: 242 FSSNQAIPPMDWEEYVSEICSDIMREQSPKRLFQVRGKLYELLINCIPPEII 293
>gi|159475545|ref|XP_001695879.1| DNA replication factor C complex subunit 3 [Chlamydomonas
reinhardtii]
gi|158275439|gb|EDP01216.1| DNA replication factor C complex subunit 3 [Chlamydomonas
reinhardtii]
Length = 356
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 172/294 (58%), Gaps = 16/294 (5%)
Query: 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
P W DK++P+S + F+ H+ A LK+LV G+ PH L G G+GK+ L MALL IYG
Sbjct: 2 PLWVDKYRPNSFDKFVVHKDIADNLKKLVATGDFPHTLFYGPPGAGKKTLVMALLRAIYG 61
Query: 406 DAC---------WNEKWPT---QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN 452
W P+ +V + SS HH+ELN ++ +N +Y + ++KE+ +
Sbjct: 62 AGVEKVRVETKPWKIDLPSRKLEVELTTLSSNHHLELNPADVGSNDRYVVQEIIKEMARS 121
Query: 453 LAITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+ + S ++V+ EVD+ ++ Q ++ M+ Y+ +C+LI+ C + ++E V++
Sbjct: 122 RPMGADGSRGFKVLVLNEVDRLSKEAQQGLRRTMEKYSSACRLIMVCSNVSKVMEPVRSR 181
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C ++V P ++MEVL +A+KE+ L FAA++ A +NLR+A++ LE C+A Y
Sbjct: 182 CLCVRVAAPSDAQVMEVLQGVAKKENLVLPEAFAARVVDYAGRNLRRALLCLEVCRAQQY 241
Query: 571 PFADDQ-PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PF D Q P WE + E+A I+ + SPK+L +VR K+ +LLA V P+LI+
Sbjct: 242 PFGDSQEPQRADWELYIAEVAKNIMDEQSPKQLYLVRSKLYELLANCVPPELIM 295
>gi|388511555|gb|AFK43839.1| unknown [Medicago truncatula]
Length = 354
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + H AQ LK+LV + +CPH+L G SG+GK+ L MALL +++G
Sbjct: 2 LWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGP 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N W + + SSA+H+E+ + +Y + ++KE+ N
Sbjct: 62 GAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ +VDK + Q+ ++ M+ Y+ C+L+LCC + E++++ C
Sbjct: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P +I+EVL I +KE L + AA+IA K+ +NLR+AI++ E C+ YP
Sbjct: 182 LNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
F D Q I P+ WEE + E+A++I+ + SPKRL VRGK+ +LL + P++IL + Y
Sbjct: 242 FTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLY 299
>gi|302835774|ref|XP_002949448.1| DNA replication factor C complex subunit 3 [Volvox carteri f.
nagariensis]
gi|300265275|gb|EFJ49467.1| DNA replication factor C complex subunit 3 [Volvox carteri f.
nagariensis]
Length = 355
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 171/293 (58%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P + + F+ H+ A LK+LV G+ PH L G G+GK+ L MALL IYG
Sbjct: 2 LWVDKYRPQTFDKFVIHKQIADNLKKLVAAGDFPHTLFYGPPGAGKKTLVMALLRAIYGP 61
Query: 407 AC---------WNEKWPT---QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN- 452
W + P+ +V + SS++H+ELN ++ N +Y + ++K++ N
Sbjct: 62 GVEKIRVETKPWQIELPSRKLEVELTTISSSYHLELNPSDVGNNDRYVVQEIIKDMARNR 121
Query: 453 -LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
L + ++V+ EVD+ + Q ++ M+ Y+ +C++++ C + ++E V++ C
Sbjct: 122 PLGVDGNKGFKVLVLNEVDRLSREAQQGLRRTMEKYSSACRIVMVCNNISKVMEPVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P ++MEVL +A+KE+ L FAA++ A +++R+A++ALE CK YP
Sbjct: 182 LCVRVAAPTDDQMMEVLAGVAKKENLTLPPVFAARLVDYASRSMRRALLALEVCKVERYP 241
Query: 572 FADDQ-PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DDQ P WE + E+A IL + SPK+L +VRGK+ +LLA V P+LI+
Sbjct: 242 FGDDQEPNRADWELYIAEVAKNILEEQSPKQLFLVRGKLYELLASCVPPELII 294
>gi|212721694|ref|NP_001131961.1| uncharacterized protein LOC100193357 [Zea mays]
gi|194693044|gb|ACF80606.1| unknown [Zea mays]
gi|414873276|tpg|DAA51833.1| TPA: replication factor C subunit 5 [Zea mays]
Length = 354
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 169/293 (57%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H AQ L++ V + +CPH+L G SGSGK+ L +AL+ +++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFGA 61
Query: 407 ACW-----NEKWPT-------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N+ W ++ + + SSAHHVE+ + +Y + ++KE+ N
Sbjct: 62 GAEKVKLENKTWKIDTGTRTFEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + A ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V+ P +I++VL I +KE+ L FAA+IA ++ +NLR+AI+ E CK YP
Sbjct: 182 LNVRVNAPSEDQIVQVLEFIGKKENLHLPAGFAARIAAQSNRNLRRAILFFETCKVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +Q PL WE+ + E+A +IL + SPKRL VR K +LL + P+ IL
Sbjct: 242 FTSNQVAPPLDWEQYVSEIATDILTEQSPKRLFAVRQKFYELLVNCIPPESIL 294
>gi|359806894|ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycine max]
gi|255645652|gb|ACU23320.1| unknown [Glycine max]
Length = 354
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + H A+ LK+LV + +CPH+L G SGSGK+ L MALL +++G
Sbjct: 2 LWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGP 61
Query: 407 ACW-----NEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N W + + SSA+H+E++ + +Y + ++KE+ N
Sbjct: 62 GAEKVKVDNRTWKVDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ +VDK + Q+ ++ M+ Y+ C+LILCC + E++++ C
Sbjct: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P +I+EVL I +KE L FAA+I K+ +NLR+AI++ E C+ YP
Sbjct: 182 LNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
F + Q I P+ WEE + E+A++I+ + SPKRL VRGK+ +LL + P++IL + Y
Sbjct: 242 FTNKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLY 299
>gi|195621066|gb|ACG32363.1| replication factor C subunit 5 [Zea mays]
Length = 354
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 169/293 (57%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DK++P +L+ H AQ L++ V + +CPH+L G SGSGK+ L +AL+ +++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFGA 61
Query: 406 --------DACWNEKWPTQVL---VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ W T+ L + + SSAHHVE+ + +Y + ++KE+ N
Sbjct: 62 GAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + A ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V+ P +I++VL I +KE+ L FAA+IA ++ +NLR+AI+ E CK YP
Sbjct: 182 LNVRVNAPSEDQIVQVLEFIGKKENLHLPAGFAARIAAQSNRNLRRAILFFETCKVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +Q PL WE+ + E+A +IL + SPKRL VR K +LL + P+ IL
Sbjct: 242 FTSNQVAPPLDWEQYVSEIATDILTEQSPKRLFAVRQKFYELLVNCIPPESIL 294
>gi|413932847|gb|AFW67398.1| hypothetical protein ZEAMMB73_776055 [Zea mays]
Length = 354
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 170/293 (58%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DK++P +L+ H A+ L++ V + +CPH+L G SGSGK+ L +AL+ +++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVARNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFGA 61
Query: 406 --------DACWNEKWPTQVL---VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ W T+ L + + SSAHHVE+N + +Y + ++KE+ N
Sbjct: 62 GAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMNPSDAGFQDRYVVQEIIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + A ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDAKGRRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V+ P +I++VL I +KE+ L FAA+IA ++ +NLR+AI+ E CK YP
Sbjct: 182 LNVRVNAPSEDQIVQVLEFIGKKENLILPAGFAARIAAQSNRNLRRAILFFETCKVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +Q PL WE+ + E+A +IL + SPKRL VR K +LL + P+ IL
Sbjct: 242 FTSNQVAPPLDWEQYVSEIATDILTEQSPKRLFDVRQKFYELLVNCIPPESIL 294
>gi|356511754|ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
Length = 354
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + H A LK+LV + + PH+L G SGSGK+ L MALL +++G
Sbjct: 2 LWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFGP 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N W + + SSA+H+E++ + +Y + ++KE+ N
Sbjct: 62 GAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ +VDK + Q+ ++ M+ Y+ C+LILCC + E++++ C
Sbjct: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P +I++VL I +KE L FAA+IA K+ +NLR+AI++ E C+ L YP
Sbjct: 182 LNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
F + Q I P+ WEE + E+A++I+ + SPKRL VRGK+ +LL + P++IL + Y
Sbjct: 242 FTNKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLY 299
>gi|357147528|ref|XP_003574379.1| PREDICTED: probable replication factor C subunit 3-like
[Brachypodium distachyon]
Length = 565
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 164/289 (56%), Gaps = 14/289 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG-D 406
WAD ++PS L FIC++ A L LV C H + +G GK+++ +ALL + +G D
Sbjct: 184 WADMYRPSVLGEFICNKAVADELHRLVTARQCNHFIFEGMQAVGKKSMVLALLRDAFGPD 243
Query: 407 ACWNEKWPTQVL----------VPVASSAHHVELNV-NLQANAKYALMGLVKE-IRDNLA 454
E+ P ++ + + SS HHVE+N+ +L K + L+ E I +
Sbjct: 244 DLKIEERPKRIELKGEIAKHIDIKIKSSDHHVEVNLADLHGYEKQVITTLLNESIPPPDS 303
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I + +IV+++ D+ + +Q+ I W + Y K+I CC + ++ E+VK CKVI
Sbjct: 304 ICDHTNCRVIVVHDADRISSDLQHYIGWFLGRYVGCSKIIFCCSNSSNL-EAVKHLCKVI 362
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+ PP EI++VL IA KE L A++IAT A NLR+AI + EA NYPF +
Sbjct: 363 TLLPPSFDEIIKVLEFIATKEGIYLPREIASRIATSASTNLRQAIRSFEATWKANYPFVE 422
Query: 575 DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQPI GWEE + ++A +I+ +PSPK+L ++RGKI+K++ V P I
Sbjct: 423 DQPILTGWEEEIFDVAKKIMEEPSPKQLYLIRGKIRKMIEHNVSPYYIF 471
>gi|414867860|tpg|DAA46417.1| TPA: hypothetical protein ZEAMMB73_190155 [Zea mays]
Length = 638
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 160/289 (55%), Gaps = 14/289 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
WADK++P+ LN FIC++ A L +LVV C H + +G GKR++ +AL+ + +G
Sbjct: 253 WADKYRPNVLNEFICNKTVAAELYQLVVAHQCRHFIFEGPPAVGKRSMVLALIRDAFGPH 312
Query: 408 CWNEKWPTQ-----------VLVPVASSAHHVELNV-NLQANAKYALMGLVKE-IRDNLA 454
+ T+ + V V +S HHVE+++ +L KY + L+ E I +
Sbjct: 313 DLKIEEQTKRFELKGEIRKHIDVRVKTSEHHVEVSLADLHGYEKYIITTLLSESIPSPSS 372
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + +IVI++ DK + +Q+ I W + Y K+I CC D ++ E++K CKV+
Sbjct: 373 VCDHTNCRVIVIHDADKLSFDLQHYIGWFLGRYAGCNKIIFCCSDASNL-EAIKHLCKVV 431
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+ PP EI+ VL IA +E DL A +I A NLR+ I + EA NYPF D
Sbjct: 432 TLQPPSFDEIINVLEYIATQESIDLPRDLARRITVGANNNLRQTIRSFEATWKANYPFID 491
Query: 575 DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q I GWEE + +A+ I+ +PSPK+L +VRGKI+K++ V P I
Sbjct: 492 GQVILTGWEEEISNVASNIMEEPSPKQLFLVRGKIRKMIEHDVSPHFIF 540
>gi|302804015|ref|XP_002983760.1| hypothetical protein SELMODRAFT_119010 [Selaginella moellendorffii]
gi|300148597|gb|EFJ15256.1| hypothetical protein SELMODRAFT_119010 [Selaginella moellendorffii]
Length = 260
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 167/266 (62%), Gaps = 14/266 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +KH+P SL+ F+ + +A LK+L+ G+C H+L +G G GK++L MALL + +G
Sbjct: 1 LWVNKHRPESLSSFVINCRQAHDLKQLISAGHCHHLLFEGPPGCGKKSLIMALLRDAFGI 60
Query: 407 ACWNEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEVSNAMI- 464
+ W T+V +P+ SSAHHVELN +++ + L L+KE++ +A T +++ I
Sbjct: 61 SAW---LGTKVSLPITSSAHHVELNLLHVGVYLRPVLTTLLKEMK--VACTAYDNDSYIR 115
Query: 465 -----VIYEVDKAAEHIQYLIKWIMDGYTDSCK-LILCCEDDVDIIESVKTHCKVIKVDP 518
V+++ DK + Q I+W+MD Y+D CK ++LCC + +SV+ C V+ V
Sbjct: 116 SYKVLVLHDADKVSAEAQQHIRWLMDRYSDYCKFMLLCCSQPSKLSDSVRLRCIVVDVHN 175
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
P ++++VL +A++E+ DL FA +IA KA +N R+A+++LEACK YPF ++Q I
Sbjct: 176 PTVDDVVQVLYFVAKRENLDLQEHFALRIA-KASKNFRQAVLSLEACKLKQYPFDENQVI 234
Query: 579 PLGWEEVLIELAAEILADPSPKRLVM 604
+ WE+ ++ +A +I+ + +P+R +
Sbjct: 235 AIEWEDDIVSMARDIIDEQNPRRYYL 260
>gi|302817642|ref|XP_002990496.1| hypothetical protein SELMODRAFT_131813 [Selaginella moellendorffii]
gi|300141664|gb|EFJ08373.1| hypothetical protein SELMODRAFT_131813 [Selaginella moellendorffii]
Length = 260
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 167/266 (62%), Gaps = 14/266 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +KH+P SL+ F+ + +A LK+L+ G+C H+L +G G GK++L MALL + +G
Sbjct: 1 LWVNKHRPESLSSFVINCRQAHDLKQLISAGHCHHLLFEGPPGCGKKSLIMALLRDAFGI 60
Query: 407 ACWNEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEVSNAMI- 464
+ W T+V +P+ASSAHHVELN +++ + L L+KE++ +A T +++ I
Sbjct: 61 SAW---LGTKVSLPIASSAHHVELNLLHVGVYLRPVLTTLLKEMK--VACTAYDNDSYIR 115
Query: 465 -----VIYEVDKAAEHIQYLIKWIMDGYTDSCK-LILCCEDDVDIIESVKTHCKVIKVDP 518
V+++ D+ + Q I+W+MD Y+D CK ++LCC + +SV+ C V+ V
Sbjct: 116 SYKVLVLHDADEVSAEAQQHIRWLMDRYSDYCKFMLLCCSQPSKLSDSVRLRCIVVDVHN 175
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
P ++++VL +A++E+ DL FA +IA KA +N R+A+++LEACK YPF ++Q I
Sbjct: 176 PTVDDVVQVLYFVAKRENLDLQEHFAWRIA-KASKNFRQAVLSLEACKLKQYPFDENQVI 234
Query: 579 PLGWEEVLIELAAEILADPSPKRLVM 604
+ WE ++ +A +I+ + +P+R +
Sbjct: 235 AIEWENDIVSMARDIIDEQNPRRYYL 260
>gi|255586016|ref|XP_002533677.1| Replication factor C subunit, putative [Ricinus communis]
gi|223526428|gb|EEF28707.1| Replication factor C subunit, putative [Ricinus communis]
Length = 661
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 169/303 (55%), Gaps = 19/303 (6%)
Query: 339 VVIEKL--RPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL 395
VI+ L R F WADK++P +L FIC++ A ++ L+ C H + +G G GKR +
Sbjct: 286 TVIDMLVEREFTWADKYRPKTLEAFICNQSTAAKVQGLIKGIECNHFIFEGSPGVGKRTM 345
Query: 396 AMALLHEIYGDACWNEKWPTQVL-----------VPVASSAHHVELNV-NLQANAKYALM 443
A++ E YG + ++ V + S+ H+E+N+ +++ K+ ++
Sbjct: 346 IRAMIQEAYGPETVQTREESKAFRLRGESIGSIEVRIKVSSQHIEVNLSDMKGYEKHIVV 405
Query: 444 GLVKEIRDNLA---ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD 500
L+KE D + + S I++Y D+ + IKW+++ Y S K CC D
Sbjct: 406 ELIKETDDKKSRNYLPKHDSCRAIILYNADRLSADAVLYIKWLLERYQGSSKFFFCC-SD 464
Query: 501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM 560
V ++++K C ++++ P EI++VL IA++E +L FA +IA ++K NLR+AI
Sbjct: 465 VSKLQAIKELCNLVQLFMPSNDEIVKVLKFIAKQEGIELPFQFAERIALESKNNLRQAIR 524
Query: 561 ALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+LEA +YPFA+DQ I GWE+ + +A ++ + SPK+L ++RGK+QKL+ V P+
Sbjct: 525 SLEASWRRSYPFAEDQEILTGWEDDIANIAKNMIQEQSPKQLYIIRGKLQKLIEHDVSPE 584
Query: 621 LIL 623
I
Sbjct: 585 FIF 587
>gi|307106826|gb|EFN55071.1| hypothetical protein CHLNCDRAFT_35851 [Chlorella variabilis]
Length = 354
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 171/293 (58%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ DK++P +L F H A L++LVV+G+CPH L G G+GK+ L +ALL EIYG
Sbjct: 2 LYVDKYRPKALEQFQLHSDVADNLRKLVVNGDCPHTLFYGPPGAGKKTLILALLREIYGP 61
Query: 407 AC---------WNEKWPTQVL---VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN- 452
W K P+ + SSA+HVE+N + N +Y + ++KE+ +
Sbjct: 62 GVEKLKVECKPWKIKLPSSSIDLEFTTISSAYHVEMNPSDVGNRDRYVVQEIIKEMAKSR 121
Query: 453 -LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+ + S ++V+ EVD+ ++ Q+ ++ M+ Y+ +C+L+LC + +I+ V++ C
Sbjct: 122 PIGTDGQRSFKVLVLNEVDQLSKEAQHSLRRTMEKYSAACRLVLCGNNVSKVIDPVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+V P ++ E + +A E L + A ++A +++NLR+A+++LEACK YP
Sbjct: 182 LCIRVAAPSLAQVEEQVQAVAAHERLTLPVPLAKRLAAASERNLRRALLSLEACKVAQYP 241
Query: 572 FADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
FA+DQ + WE + E+AA+++ + +PKRL + RGK+ +LL + P+++L
Sbjct: 242 FAEDQEVAAPDWELYIREIAADVMLEQTPKRLFLARGKLYELLTNCIPPEVVL 294
>gi|412989140|emb|CCO15731.1| replication factor C subunit 3 [Bathycoccus prasinos]
Length = 410
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 172/303 (56%), Gaps = 24/303 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQL---LKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
W DK++P LN C A + LKELV DG+CPH+L G SGSGK++L +ALL I
Sbjct: 56 LWVDKYRPIELNQ--CEHVNASVANHLKELVKDGDCPHLLFYGPSGSGKKSLVLALLSTI 113
Query: 404 YGDACWNEK-----WPT--------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEI 449
+G K W +V + SS +H+E+N + +Y + ++KE+
Sbjct: 114 FGPGAHKTKVEQKTWKIDATSTRKIEVDLMTQSSNYHIEINPSDAGYKDRYVVQEVIKEM 173
Query: 450 RDNLAITPEVSNA---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
+ I + NA ++V+ E DK ++ Q+ ++ M+ Y+ +C+LIL + ++E+
Sbjct: 174 ARSRPIDAQ-GNAGYKILVLTECDKLSKEAQHGLRRTMEKYSSACRLILIADSVNRVLEA 232
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
V++ C ++V P +I +VL IA KE L +K+A AK++LR+AI+ALEAC+
Sbjct: 233 VRSRCLPVRVAAPRAEDIEKVLYDIAAKEKLTLPPQLCSKVAVFAKRDLRRAILALEACR 292
Query: 567 ALNYPFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLV 625
NYPF + Q + WE + ++AAEILA+ SPKRL+ VRG+I +LL + P LI
Sbjct: 293 VANYPFKETQSVQTTDWELYIAQIAAEILAEQSPKRLLQVRGRIYELLVNCIPPTLIFQT 352
Query: 626 MHY 628
+ +
Sbjct: 353 LCF 355
>gi|384253748|gb|EIE27222.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 354
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 164/293 (55%), Gaps = 16/293 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ I H+ + LK+LV G+CPH+L G G+GK+ L + LL EIYG
Sbjct: 2 LWVDKYRPRTLDDLIIHQDIGESLKKLVTTGDCPHLLFYGPPGAGKKTLILGLLREIYGT 61
Query: 407 AC---------WNEKWPTQVL---VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN- 452
A W + P++ L + S +HVELN + N +Y + ++K++ N
Sbjct: 62 AVEKIKVETKPWKIELPSRKLEIELTTVQSNYHVELNPSDVGNQDRYVVQEVIKDMCKNR 121
Query: 453 -LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
L + + ++++ EVD+ + Q+ ++ M+ Y+ +C+LI C + +I+ +++ C
Sbjct: 122 PLELKGQRGYKVLLLNEVDRLSREAQHSLRRTMEKYSATCRLIFSCSNVSKVIDPLRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P EI VL +A+KE+ L +I + +NLR+A++ LE C+ YP
Sbjct: 182 LCVRVPGPTGSEIQHVLQHVAQKENVQLPDALCQRIVQMSDRNLRRALLTLETCRVTQYP 241
Query: 572 FADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F + Q + L WE + E+AA IL + SPKRL VRGK+ +LL + +LIL
Sbjct: 242 FTEAQSVQLPDWEMYIQEIAAFILQEQSPKRLYEVRGKLYELLVNCLPAELIL 294
>gi|326491965|dbj|BAJ98207.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 591
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 14/289 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
WAD+++PS L FIC++ A L +V + C H + +G GKR++ +ALL + +G
Sbjct: 210 WADRYRPSVLGEFICNKAVADELHRMVTERQCNHFIFEGAQAVGKRSMVLALLRDAFGPD 269
Query: 408 CWNEKWPTQVL-----------VPVASSAHHVELNV-NLQANAKYALMGLVKE-IRDNLA 454
+ T+ + V V S HHVE+N+ +L KY + L+ E I
Sbjct: 270 NLKMEEITKRIELKGEIAKHIDVKVKISDHHVEVNLADLHGYEKYVITTLLNESIPPPDL 329
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I + +IV+++ D+ + +Q+ I W + Y K+I C ++ ESV+ CKV+
Sbjct: 330 ICDHANCKVIVVHDADRLSSDLQHYIGWFLGRYAGCNKIIFSCSSSSNL-ESVEHLCKVV 388
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
++ PP EI++VL IA +E DL A++IA A NLR+AI + EA +YPF
Sbjct: 389 RLKPPSFDEIIKVLEFIATQEGIDLPHGLASRIAASASNNLRQAIRSFEATWKASYPFTK 448
Query: 575 DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQPI GWEE + ++A +I+ +PSPK+L ++R KI+K++ V P I
Sbjct: 449 DQPILTGWEEEIYDVAKKIMEEPSPKQLYLIRRKIRKMIEHNVSPYFIF 497
>gi|281204078|gb|EFA78274.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 346
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 166/289 (57%), Gaps = 15/289 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL+ H+ ++ LK +++ G+ PH+L+ G SG+GK+ MA L EIYG
Sbjct: 2 LWIDKYKPTSLDQMDYHKDISENLKNMILGGDFPHLLVYGPSGAGKKTRVMATLKEIYGA 61
Query: 407 ACWNEKWPTQVL----------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
C K + V SS +H+E+N +A + L +++ I ++A +
Sbjct: 62 NCLKVKIENKTFKHPSSSKSIQVTTVSSPYHIEINPG-EAGSYDRL--VIQSIIKDIAQS 118
Query: 457 PEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P + + ++++ EVDK ++ Q+ ++ M+ Y + C+LILCC+ +I+ +++ C I
Sbjct: 119 PPIDSQSFVVILNEVDKLSKDAQHALRRTMEKYANFCRLILCCDSTSKVIDPIRSRCMGI 178
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI++VL +A+KE FDLS A A ++ NLR A++ LE+ K YPF
Sbjct: 179 RVPAPTKEEIVKVLQNVAKKERFDLSAEVAGHFAERSNGNLRYALLLLESKKTKEYPFQT 238
Query: 575 DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
++ L WE + +A +++ + SP RL ++RGK+ +L+ + P +I+
Sbjct: 239 NELPLLDWESAIFNVANDMITEQSPARLQVIRGKLYELIGHCIPPDIIM 287
>gi|303281866|ref|XP_003060225.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458880|gb|EEH56177.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 356
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 168/295 (56%), Gaps = 18/295 (6%)
Query: 347 FWADKHQPSSLNGFI-CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DKH+P +L+ F + A+ LK LV DG+CPH+L G SG+GK+ LA+A+L EI+G
Sbjct: 2 LWVDKHRPHALDKFAHANVSTAEHLKRLVADGDCPHLLFYGVSGAGKKTLALAVLREIFG 61
Query: 406 DACWNEK-----WPTQ-------VLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDN 452
K W + V + SS +HVE+N + N +Y + ++KE+ +
Sbjct: 62 PGVEKVKVEGKTWKIEQGERKIEVELTTMSSNYHVEMNPSDAGNKDRYVVQEVIKEMAKS 121
Query: 453 LAITPEVSNAM---IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
I + + VD ++ Q+ ++ M+ Y+ +C+L+L C ++++V++
Sbjct: 122 RPIDAAGNQGFKGAFYLTLVDNLSKEAQHGLRRTMEKYSQACRLVLVCNSVSKVLDAVRS 181
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
C I+V P T E+ +L +A++E L A ++A +++N+R+A+++LEAC+A
Sbjct: 182 RCLPIRVAAPSTTEVEALLHDVAKREKLTLPPELAGRVAAHSERNMRRALLSLEACRAHQ 241
Query: 570 YPFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
YPF DQ + WE + ++A EIL + SPKRL+ +RG++ +LL + P+LI+
Sbjct: 242 YPFTPDQVVQGTDWEAYVAQIANEILQEQSPKRLLQIRGRLYELLVNCIPPELIM 296
>gi|323456769|gb|EGB12635.1| hypothetical protein AURANDRAFT_69595 [Aureococcus anophagefferens]
Length = 353
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 15/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P L H ++ L L DG+ PH+L G SG+GK+ MALL +YG
Sbjct: 2 LWVDKHRPLELGKMSYHGELSERLATLAADGDIPHLLFYGPSGAGKKTRIMALLRALYGA 61
Query: 407 ACWNE-------KWPTQ--VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
+ K PT + V +S +H+E+N + N +Y + ++KEI + ++
Sbjct: 62 GAEKQRLEHRDFKTPTNKAIEVTTVASNYHIEINPSDAGNNDRYVVQEVIKEIAQSGSLH 121
Query: 456 ---TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V ++++ EVD+ Q ++ M+ T SC+LILCC + +I+ +++ C
Sbjct: 122 KGDKGRVGYKVVLLVEVDRLTRQAQAGLRRTMEKCTSSCRLILCCNNPSKVIDPLRSRCL 181
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
I+V P EI+ VL +A +E DL AA+IA +K+NLR+AI++LE CK YPF
Sbjct: 182 GIRVAAPTEAEIVAVLDDVAARERLDLPPALAARIAKASKRNLRRAILSLEECKVQQYPF 241
Query: 573 ADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q +PL WE+ ++ +A++I + SP+RL+ R K+ +LL++ + +IL
Sbjct: 242 DAAQAVPLPDWEQYVVAIASDIAREQSPQRLLATRDKLYELLSKCIPADVIL 293
>gi|359489140|ref|XP_002265263.2| PREDICTED: uncharacterized protein LOC100265748 [Vitis vinifera]
Length = 659
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 162/297 (54%), Gaps = 25/297 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG-- 405
WADK++P +L+ FIC+R +A L++LV PH + +G +G GK+ + A L E++G
Sbjct: 294 WADKYRPKALSDFICNRDKAVQLQDLVKVEQHPHFIFEGLAGVGKKTMISAFLREVFGHD 353
Query: 406 -----DACWNEKWPTQ----VLVPVASSAHHVELNV-NLQANAKYALMGLVKEIRDNLA- 454
+ C + + V V S HH+E+N+ +L+ K ++ L+ E +N A
Sbjct: 354 RVQTREECKEFYLKGESIRSIRVNVKVSCHHIEVNLSDLKGYEKQVIVQLIHETGNNRAN 413
Query: 455 ----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+ EV + IV+YE +K + KW++D Y + C D ++ +K+
Sbjct: 414 KAVRVNQEVQS--IVLYEAEKLSTEALLYFKWLLDKYEGHNMVFFSC-SDTSKLQPIKSL 470
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C ++++ PP EI+EVL IA++E +L A KI +K NLR+AI + EA Y
Sbjct: 471 CTMVQLLPPSDEEIVEVLELIAKQESINLPRELAEKIVGNSKNNLRQAIRSFEATWKFKY 530
Query: 571 PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLL-----AEFVHPKLI 622
PF +DQ I GWE+ + +A I+ + +PK+L +RGK+QKL +EF++ L+
Sbjct: 531 PFEEDQEIRTGWEDDIARIAKNIIEEQTPKQLYNIRGKLQKLTEHNVASEFIYKTLV 587
>gi|124249204|ref|NP_081285.1| replication factor C subunit 3 [Mus musculus]
gi|30913256|sp|Q8R323.1|RFC3_MOUSE RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|20071210|gb|AAH26795.1| Rfc3 protein [Mus musculus]
gi|74188877|dbj|BAE39214.1| unnamed protein product [Mus musculus]
gi|74203125|dbj|BAE26250.1| unnamed protein product [Mus musculus]
gi|148673950|gb|EDL05897.1| mCG17786, isoform CRA_a [Mus musculus]
Length = 356
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 162/293 (55%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + RKE L T A ++A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|224129392|ref|XP_002320575.1| predicted protein [Populus trichocarpa]
gi|222861348|gb|EEE98890.1| predicted protein [Populus trichocarpa]
Length = 725
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 164/298 (55%), Gaps = 24/298 (8%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG--- 405
A+K+QP +L FIC+R +A ++ ++ D +C H + +G +G GKR + A+L E +G
Sbjct: 317 ANKYQPKALKDFICNRDQAIRMQGVMRDFDCNHFIFEGPAGVGKRTMIRAMLQEAFGQER 376
Query: 406 ----DAC--WNEKWPT--QVLVPVASSAHHVELNV-NLQANAKYALMGLVKEIRDNLAIT 456
+ C +N K + V V S+ HVE+N+ +L+ K ++ L+KE +N
Sbjct: 377 VQAREECKSFNLKGEQIGSIQVRVKVSSQHVEVNLSDLKGYEKQVIVELIKETHNNHNKR 436
Query: 457 PEVSNAM-----------IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
+N + I++YE D + IKW+++ Y K CC +DV ++
Sbjct: 437 IISNNPINPKSRLDDCRAIILYEADMLSTDALLYIKWVLERYKGFSKFFFCC-NDVSRLQ 495
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+++ C V+++ PP E+++VL IA +E +L A KIA K+K NLR+AI + EA
Sbjct: 496 PIRSLCTVVQLLPPSKREVVQVLEFIAEQEAIELPYPLAEKIADKSKNNLRQAIRSFEAS 555
Query: 566 KALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+YPF +DQ I GWE+ + +A +++ + SPK+L ++RGK+Q L+ V P
Sbjct: 556 WHGSYPFTEDQEILTGWEDDIANIAKDMVEEQSPKQLYIIRGKLQNLIEHDVSPDFFF 613
>gi|291408671|ref|XP_002720641.1| PREDICTED: replication factor C 3 [Oryctolagus cuniculus]
Length = 356
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 161/293 (54%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P EI VL + +KE +L A ++A K+++NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEEICHVLTTVCKKEGLNLPSQLAHRLAEKSRRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|427795473|gb|JAA63188.1| Putative replication factor c subunit rfc3, partial [Rhipicephalus
pulchellus]
Length = 357
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 165/293 (56%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P++L+ H+ +A LK+LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 5 LWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELYGA 64
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + A +++E+ +A T
Sbjct: 65 GVERLRIEHQNFVTPSKKKIEIVTVASNYHIEVN---PSEAGIHDRVVIQELLKTVAQTQ 121
Query: 458 EV-SNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ SNA ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I ++++ C
Sbjct: 122 QLESNAQREFKVVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSCSKVIPAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+V P E++ VL +ARKE L T A IA ++ +NLR+A++ LEAC+A YP
Sbjct: 182 LAIRVAAPSVDEVITVLNLVARKEGITLPDTLAQAIAAQSHRNLRRAVLMLEACRAQQYP 241
Query: 572 FADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F+D+Q + WE L E A I+ + S KRL VR ++ +LL + P +IL
Sbjct: 242 FSDNQKVRQPDWELYLEETAKMIVQEQSVKRLSEVRARLYELLTHLIPPDVIL 294
>gi|255082302|ref|XP_002504137.1| predicted protein [Micromonas sp. RCC299]
gi|226519405|gb|ACO65395.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 172/294 (58%), Gaps = 17/294 (5%)
Query: 347 FWADKHQPSSLNGFICHRHE-AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P +L+ + AQ LK LV DG+CPH+L G G+GK+ LA+A+L EI+G
Sbjct: 2 LWVDKYRPHTLDQMTTVNTDIAQHLKRLVQDGDCPHLLFYGVGGAGKKTLALAVLREIFG 61
Query: 406 DACWNEK-----WP-------TQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN 452
A K W +V + SS +HVE+N ++ +Y + ++K++ +
Sbjct: 62 AAVEKVKVEGKTWKLEQGERKIEVELTTMSSNYHVEMNPSDVGTKDRYVVQEVIKDMAKS 121
Query: 453 LAI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
I + ++++ EVD+ ++ Q+ ++ M+ Y+ +C+LIL C ++++V++
Sbjct: 122 RPIDAAGQQGYKVLLLNEVDRLSKEAQHGLRRTMEKYSSACRLILICTSVSKVLDAVRSR 181
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C ++V P + ++++ +A+KE + AA++A +++N+R+ ++++EAC+ Y
Sbjct: 182 CLPVRVAAPSVETVEKLVMDVAQKEKLVMPPELAARLALHSERNMRRCLLSMEACRVQQY 241
Query: 571 PFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PF DQP+ L WE + ++A EIL + +PKRL+ VRG+ +L+ + P+LI+
Sbjct: 242 PFKADQPVQLCDWEAYVTQIANEILQEQTPKRLLQVRGRFYELIVNCIPPELII 295
>gi|196006351|ref|XP_002113042.1| hypothetical protein TRIADDRAFT_26016 [Trichoplax adhaerens]
gi|190585083|gb|EDV25152.1| hypothetical protein TRIADDRAFT_26016 [Trichoplax adhaerens]
Length = 355
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL+ H+ A+ LK L+ G+ PH+L G SG+GK+ MA+L E+YG
Sbjct: 3 LWVDKYRPTSLSKLDYHKDLAEQLKNLIQSGDFPHLLFYGPSGAGKKTRIMAMLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ Q + +S +H+E+N + + N + + G++K + L
Sbjct: 63 GVEKLRVEHQTFETPSKKKIEITTVASNYHIEINPSDAKNNDRVVIQGMIKSVAQTQQLD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + +IV+ E+D+ + Q+ ++ M+ Y +C+LILCC +I +V++ C I
Sbjct: 123 AISQKNFKVIVVMELDRLTKDAQHALRRTMEKYISTCRLILCCNSTSRVIPAVRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E + L + +KE L+ A +IA ++K+NLR+A++ EACK YPF
Sbjct: 183 RVAAPTADEAL--LHGVCKKEGLTLNQELAVRIAEQSKRNLRRALLMCEACKVQQYPFTP 240
Query: 575 DQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQP+ WE L E AA I+ +PKRL+ VR ++ +LL + P +I+
Sbjct: 241 DQPVSEAEWEIYLRETAAAIVEQQNPKRLLEVRARLYELLCHCIPPDVII 290
>gi|224043287|ref|XP_002195786.1| PREDICTED: replication factor C subunit 3 [Taeniopygia guttata]
Length = 356
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WADKH+P +L HR +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWADKHRPGALARLDFHREQAARLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N + + L+K + L
Sbjct: 63 GVEKLRIEHQSITAPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ +VDK + Q+ ++ M+ Y +C+LILCC II +++ C I
Sbjct: 123 TSTQRDFKVVLLTDVDKLTKDAQHALRRTMEKYMATCRLILCCNSVSKIIGPIQSRCLAI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE L A +IA K+ +NLRKA++ E+C+ YPF+
Sbjct: 183 RVPAPSIEDICHVLSSVCKKEGLTLPQELAQRIAEKSGRNLRKALLMCESCRVQQYPFSA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP + WE L E A I+ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQDIPEMDWEVYLRETANAIVGQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|149635763|ref|XP_001509935.1| PREDICTED: replication factor C subunit 3-like [Ornithorhynchus
anatinus]
Length = 356
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPGSLARLDYHKEQANQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGT 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N + + L+K + L
Sbjct: 63 GVEKLRIEHQAITTPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE L A ++A KA +NLRKA++ EACK YPF
Sbjct: 183 RVPAPSVEDICHVLSTVCKKEGLSLPPALARRLAEKANRNLRKALLMCEACKVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|260833022|ref|XP_002611456.1| hypothetical protein BRAFLDRAFT_113525 [Branchiostoma floridae]
gi|229296827|gb|EEN67466.1| hypothetical protein BRAFLDRAFT_113525 [Branchiostoma floridae]
Length = 356
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 160/290 (55%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SLN H +A LK LV +G+ PH+L+ G SG+GK+ LL E+YG
Sbjct: 3 LWVDKYRPTSLNKLSYHTEQAAQLKRLVQNGDFPHLLVFGPSGAGKKTRITCLLRELYGA 62
Query: 407 AC-------WNEKWPTQ--VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRD--NLA 454
N P++ + + +S +H+E+ + + + L+K + L
Sbjct: 63 GVEKLRIEHHNFTTPSKKKIEITTIASNYHIEVCPSDAGVQDRVVVQELIKMVAQAQQLD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVD+ + Q+ ++ M+ Y +C+LILCCE +I ++++ C +
Sbjct: 123 SSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYVTTCRLILCCESTSKVIPAIRSRCLGV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I +L + +KE LS A +IA K+ +NLR+AI+ LEACK YPF
Sbjct: 183 RVPAPSNQQICSILQTVCKKEGLTLSPELAGRIADKSGRNLRRAILMLEACKVQQYPFRP 242
Query: 575 DQP-IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQP + WE L E A I++ SP+RL+ VRG++ +LL + P +I+
Sbjct: 243 DQPVVEADWEVFLRETANAIVSQQSPRRLLEVRGRLYELLTHCIPPDVII 292
>gi|72016481|ref|XP_779912.1| PREDICTED: replication factor C subunit 3 isoform 1
[Strongylocentrotus purpuratus]
Length = 356
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 159/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P++L+ H+ +A LK+LV G+ PH+++ G SG+GK+ M L E+YG
Sbjct: 3 LWVDKHRPTALSKLDYHKEQASNLKKLVQSGDFPHLMVYGPSGAGKKTRIMCALKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRD--NLA 454
+ Q + +S +H+E+N + + + L+K +
Sbjct: 63 GVEKLRIEHQTFTTPSKAKIEITTIASNYHIEVNPSDAGIYDRIVIQDLIKNTAQFQQME 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++V+ EVD+ + Q+ ++ M+ YT +C+LILCC +I ++++ C +
Sbjct: 123 TSAQRDFKVVVLTEVDRLTKDAQHALRRTMEKYTATCRLILCCNSTSKVIPAIRSRCLGV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI ++L + +KE +L A +IA K+++NLRKAI++ EACK YPF+
Sbjct: 183 RVAAPSIAEITQILQNVCKKEGLNLPSELAKRIAEKSERNLRKAILSCEACKVQQYPFSA 242
Query: 575 DQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L + A I+ SP++L+ VRG++ +LL + +IL
Sbjct: 243 DQDIPEADWEVFLRDTANHIIQQQSPRQLLEVRGRMYELLTHCIPADVIL 292
>gi|301608991|ref|XP_002934079.1| PREDICTED: replication factor C subunit 3-like [Xenopus (Silurana)
tropicalis]
Length = 356
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 160/290 (55%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL+ H+ +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPSSLSKLDYHKEQAVQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + L+K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
++ P EI VL + +KE L A KIA K+ +NLRKA++ EAC+ YPF+
Sbjct: 183 RICAPSVDEICTVLFSVCKKEGLILPQELARKIAEKSGRNLRKALLMCEACRVQQYPFSA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ +P WE + E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQDLPETDWEVYVKETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIII 292
>gi|346470469|gb|AEO35079.1| hypothetical protein [Amblyomma maculatum]
Length = 388
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 164/291 (56%), Gaps = 15/291 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P++L+ H+ +A LK+LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 36 LWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELYGA 95
Query: 407 AC-------WNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459
N P++ + + + A + + VN Y + +++E+ +A T ++
Sbjct: 96 GVERLRIEHQNFVTPSKKKIEIVTVASNYHIEVNPSEAGIYDRV-VIQELLKTVAQTRQL 154
Query: 460 SN------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
N ++V+ EVDK + Q+ ++ M+ Y +C+L+LCC +I ++++ C
Sbjct: 155 ENNTQREFKVVVLTEVDKLTKDAQHALRRTMEKYMATCRLVLCCNSCSKVIPAIRSRCLG 214
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P E + VL +ARKE+ +L T A IA ++ +NLR+A++ LEAC+A YPF+
Sbjct: 215 IRVAAPSIEETITVLNLVARKENINLPDTLARTIAAQSHRNLRRAVLMLEACRAQQYPFS 274
Query: 574 DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D+Q + WE L E A I+ + S KRL VR ++ +LL + P +IL
Sbjct: 275 DNQKVRQPDWEVYLEETARMIVQEQSVKRLSEVRARLYELLTHLIPPDVIL 325
>gi|395520900|ref|XP_003764560.1| PREDICTED: replication factor C subunit 3 [Sarcophilus harrisii]
Length = 356
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 159/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPSSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + L+K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TSTQREFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSELAHRLAEKSCRNLRKALLMCEACRVQQYPFTS 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ +RG++ +LL + P++I+
Sbjct: 243 DQDIPETDWEIYLRETANAIVSQQTPQRLLEIRGRLYELLTHCIPPEIIM 292
>gi|57529302|ref|NP_001006276.1| replication factor C subunit 3 [Gallus gallus]
gi|53133448|emb|CAG32053.1| hypothetical protein RCJMB04_16m20 [Gallus gallus]
Length = 356
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 161/290 (55%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PS+L+ HR +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N + + L+K + L
Sbjct: 63 GVEKLRIEHQSITAPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC II +++ C +
Sbjct: 123 TSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ E+C+ YPF+
Sbjct: 183 RVPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYPFSA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP + WE L E A I++ SP+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQDIPEMDWEICLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|126327443|ref|XP_001367742.1| PREDICTED: replication factor C subunit 3 [Monodelphis domestica]
Length = 356
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 159/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPTSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + L+K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TSTQREFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSELAHRLAEKSCRNLRKALLMCEACRVQQYPFTP 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ +RG++ +LL + P++I+
Sbjct: 243 DQDIPETDWEVYLRETANAIVSQQTPQRLLEIRGRLYELLTHCIPPEIIM 292
>gi|443704239|gb|ELU01384.1| hypothetical protein CAPTEDRAFT_181059 [Capitella teleta]
Length = 358
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 164/296 (55%), Gaps = 25/296 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H+ +A LK+LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPTALGKLDYHKEQAGHLKKLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN---VNLQANAKYALMGLVKEIRDNLA 454
+ Q V +S +H+E+N V +Q +++E+ ++A
Sbjct: 63 GVEKTRIEHQTFVTPSKKKLEISTVASNYHIEVNPSDVGVQDRV------VIQEVVKSMA 116
Query: 455 ITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
T ++ + ++V+ EVD+ + Q+ ++ M+ Y +C+LILCC +I +++
Sbjct: 117 QTNQLETSQQREFKVLVLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPAIR 176
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C ++V P +I +VL + +KE +L A KIAT++ +NLR+AI+ EAC+
Sbjct: 177 SRCFAVRVPAPSEDQICQVLQLVCKKEGLNLPSDLAKKIATQSNRNLRRAILMCEACRVQ 236
Query: 569 NYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
YPF+ +Q + L WE L E A I+ SPKRL+ VRG++ +LL+ + +I+
Sbjct: 237 QYPFSSNQDVTLPDWELYLRETANMIIQQQSPKRLLEVRGRLYELLSHCIPSDVIM 292
>gi|148226246|ref|NP_001089570.1| replication factor C (activator 1) 3, 38kDa [Xenopus laevis]
gi|67514211|gb|AAH98179.1| MGC115007 protein [Xenopus laevis]
Length = 356
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 160/290 (55%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL+ H+ +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPSSLSKLDYHKDQASQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + L+K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T EI VL + +KE L A +IA K+ +NLRKA++ EA + YPF+
Sbjct: 183 RVPAPSTDEICTVLFSVCKKEGLVLPQDLARRIAEKSGRNLRKALLICEASRVQQYPFSA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ +P WE + E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQDLPETDWEVYVKETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIII 292
>gi|194383204|dbj|BAG59158.1| unnamed protein product [Homo sapiens]
Length = 305
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 159/295 (53%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRLMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+ V +
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKVTQF 297
>gi|114649328|ref|XP_509625.2| PREDICTED: replication factor C subunit 3 isoform 4 [Pan
troglodytes]
gi|397513233|ref|XP_003826924.1| PREDICTED: replication factor C subunit 3-like [Pan paniscus]
gi|410218892|gb|JAA06665.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410266462|gb|JAA21197.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410287194|gb|JAA22197.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410331917|gb|JAA34905.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
Length = 356
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A +IA K+++NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRIAEKSRRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIM 292
>gi|225706298|gb|ACO08995.1| Replication factor C subunit 3 [Osmerus mordax]
Length = 356
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A LK LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWLDKYRPSSLGKLDYHKEQAIQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ Q + + +S +H+E+N + N+ + + L+K + + I
Sbjct: 63 GVEKLRIEHQTITAPSKKKIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTMAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++++ EVD+ + Q+ ++ M+ Y +C+LILCC +I +++ C I
Sbjct: 123 TSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIGPIRSRCLAI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T E+ VL + RKE L A +I+ K+ +NLRKA++ EAC+ YPF+
Sbjct: 183 RVPLPSTEEVCGVLSAVCRKEGLTLPPELAQQISEKSGRNLRKALLMCEACRVQQYPFSV 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ SP+RL+ VRG++ +LL + P +I+
Sbjct: 243 DQSIPETDWEVYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPDIIM 292
>gi|57526873|ref|NP_001009629.1| replication factor C subunit 3 [Rattus norvegicus]
gi|56789712|gb|AAH88281.1| Replication factor C (activator 1) 3 [Rattus norvegicus]
gi|149015521|gb|EDL74921.1| replication factor C (activator 1) 3 [Rattus norvegicus]
Length = 356
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 161/293 (54%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+V P +I VL + +KE L A ++A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIM 292
>gi|328866732|gb|EGG15115.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 352
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 162/290 (55%), Gaps = 14/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL+ H + LK ++ + PH+L+ G SG+GK+ MA+L E+YG
Sbjct: 2 LWVDKYKPTSLDHMDYHPDLSLHLKNMIKSSDFPHLLVYGPSGAGKKTRIMAILKEVYGP 61
Query: 407 ACWNEKWPTQVL----------VPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAI 455
C K + V SS +H+E+N +N + + ++KEI + I
Sbjct: 62 NCLKLKIDHRTFKHPSTNKNLQVTTISSPYHIEINAGEAGSNDRLIVQSIIKEIAQSPPI 121
Query: 456 TPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
V A ++++ EVDK ++ Q+ ++ M+ Y SC+LILCC+ +I+ +++ C
Sbjct: 122 DSSVFGAFKIVILNEVDKLSKDAQHALRRTMEKYAASCRLILCCDSTSRVIDPIRSRCLG 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P ++ VL +A KE F+L + +IA KAK NLR A++ LEA KA YPF
Sbjct: 182 IRVPAPSIADVQNVLNIVATKEKFELPKKISEEIAVKAKGNLRYALLMLEAKKAKQYPFV 241
Query: 574 DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ P+ L WE + +A +I+ + +P +L+ VR K+ +L+ + P+LI+
Sbjct: 242 EGVPL-LDWENYIQVIARDIIMEQTPAKLMAVRAKLYELIGHCIPPELII 290
>gi|426375155|ref|XP_004054411.1| PREDICTED: replication factor C subunit 3 isoform 2 [Gorilla
gorilla gorilla]
Length = 315
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|308803597|ref|XP_003079111.1| putative replication factor (ISS) [Ostreococcus tauri]
gi|116057566|emb|CAL53769.1| putative replication factor (ISS) [Ostreococcus tauri]
Length = 397
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 164/294 (55%), Gaps = 17/294 (5%)
Query: 347 FWADKHQPSSL-NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DKH+P L + + A+ LK L+ G+CPH+ G SG+GK+ LA+A+L EI+G
Sbjct: 44 LWVDKHRPHELGDATTVNARTAKHLKLLIARGDCPHLFFHGPSGAGKKTLALAVLREIFG 103
Query: 406 DACW-----NEKWP-------TQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN 452
N+ W +V + + SS H E+N + + +Y + ++KE+ +
Sbjct: 104 AGVEKVKLENKTWKIDQNDRGVEVELAMMSSNFHCEMNPSDCGSKDRYVVQEVIKEMARS 163
Query: 453 LAITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
I + ++V+ EVD+ + QY ++ M+ Y+ SC+L L E +++++++
Sbjct: 164 RPIDADGIEGYKVLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSKVMDALQSR 223
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C I+V P EI +L ++A+KE +L A ++A + +N+R+A++ LE C+ +NY
Sbjct: 224 CLPIRVPGPSIEEIENLLHEVAKKEKLELPPELATRVAQASGRNMRRALLTLETCRVMNY 283
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PF Q + WE + ++ +EILA+ SP RL+ VRG++ +L + P++IL
Sbjct: 284 PFKPTQAVQTTDWELYINQIGSEILAEQSPSRLLQVRGRLYELFVNCIPPEIIL 337
>gi|108773789|ref|NP_853536.2| replication factor C subunit 3 isoform 2 [Homo sapiens]
Length = 305
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|417399569|gb|JAA46780.1| Putative replication factor c subunit rfc3 [Desmodus rotundus]
Length = 356
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 161/290 (55%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WADK++P SL+ H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWADKYRPCSLSRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCVLRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVD+ ++ Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDRLSKDAQHALRRTMEKYMATCRLILCCSSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI +VL + +KE L A ++A ++ +NLRKA++A EAC+ YPF
Sbjct: 183 RVPAPSIEEICDVLSAVCKKEGLSLPPQLARRLAEQSCRNLRKALLACEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ +P WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQDVPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|351703595|gb|EHB06514.1| Replication factor C subunit 3 [Heterocephalus glaber]
Length = 356
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVISPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A +IA K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAQRIAEKSCRNLRKALLMSEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|54696204|gb|AAV38474.1| replication factor C (activator 1) 3, 38kDa [Homo sapiens]
gi|61357169|gb|AAX41345.1| replication factor C 3 [synthetic construct]
Length = 356
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A IL+ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAILSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|149730139|ref|XP_001494707.1| PREDICTED: replication factor C subunit 3 [Equus caballus]
Length = 356
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLTTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|345790237|ref|XP_534500.3| PREDICTED: replication factor C subunit 3 [Canis lupus familiaris]
Length = 356
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I+++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|298714917|emb|CBJ27673.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 160/300 (53%), Gaps = 23/300 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P SL+ H L + DG PH+L G +GSGK+ +ALL IYG
Sbjct: 2 LWVDKHRPKSLDSLDVHPELTTRLAAMSEDGEIPHLLFYGPAGSGKKTRVLALLKRIYGP 61
Query: 407 AC-------WNEKWPTQVLVPVASSA--HHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ K P+ +V + + A +H+E++ + +Y + ++KEI N +I+
Sbjct: 62 GAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYVVQDIIKEIAQNRSIS 121
Query: 457 P------------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
++ + ++V+ VD+ + Q ++ M+ YT SC+LIL C +I
Sbjct: 122 ASMGGGGSDDKKSKIGHKVVVLVGVDRLTKQAQAGLRRTMERYTSSCRLILLCHSPSKVI 181
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
E V++ C ++V P E+ VL + RKE L AA++A +K+NLR+A++ +EA
Sbjct: 182 EPVRSRCLGVRVPAPSESEVCSVLTSVCRKESLTLPPALAARVAKVSKRNLRRAVLMIEA 241
Query: 565 CKALNYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
C+ YPF++DQ + + WE + +LA E++ + SP+RL+ R K+ +LL + +IL
Sbjct: 242 CRVQQYPFSEDQEVQMTDWENYITQLAREVVLEQSPRRLLEAREKLYELLTNCIPADIIL 301
>gi|145346328|ref|XP_001417641.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577869|gb|ABO95934.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 355
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 167/294 (56%), Gaps = 17/294 (5%)
Query: 347 FWADKHQPSSLNGF-ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DKH+P +L + +A+ LK L+ +G+CPH+ G SG+GK+ LA+ +L EI+G
Sbjct: 2 LWVDKHRPHALGECDAINTAQAKHLKLLIANGDCPHLFFYGPSGAGKKTLALGVLREIFG 61
Query: 406 DACW-----NEKWPT-------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN 452
N+ W +V + + SS HH E+N + + +Y + ++KE+ +
Sbjct: 62 PGAEKVKLENKTWKIDQNDRKIEVELAMMSSNHHCEMNPSDCGSKDRYVVQEVIKEMARS 121
Query: 453 LAITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
I + ++V+ EVD+ + QY ++ M+ Y+ SC+L L E +++++++
Sbjct: 122 RPIDSDGCEGFKVLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSRVMDALQSR 181
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C ++V P EI +L +A+KE +L A ++AT + +N+R+A++ALE C+ +Y
Sbjct: 182 CLPVRVPGPRVEEIENLLHDVAKKEKLELPPELATRVATASGRNMRRALLALETCRVNSY 241
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PF Q + WE + ++ AEILA+ SP RL+ VRG++ +L+ + P++IL
Sbjct: 242 PFKPTQAVQTTDWELYINQIGAEILAEQSPARLLQVRGRLYELIVNCIPPEIIL 295
>gi|297693825|ref|XP_002824203.1| PREDICTED: replication factor C subunit 3 isoform 1 [Pongo abelii]
Length = 356
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 159/293 (54%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + V+E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---VQEMLKTVAQSQ 119
Query: 458 EVSN------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|391337617|ref|XP_003743163.1| PREDICTED: replication factor C subunit 3-like [Metaseiulus
occidentalis]
Length = 362
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 161/303 (53%), Gaps = 32/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ DK++P L H+ +A LK LV G+ PH+L+ G SG+GK+ MA L E++G
Sbjct: 3 LYVDKYRPKDLEKLDYHKKQASWLKGLVNGGDLPHLLVYGPSGAGKKTRIMATLKELFGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN---VNLQANAKYALMGLVKEIRDNLA 454
+ QV + SS +H+E+N V +Q +++E+ N+A
Sbjct: 63 GVERLRIEQQVFTTQSKKKIEIRTLSSNYHIEVNPSDVGIQDRV------VIQELLKNIA 116
Query: 455 ITPEVSNA-------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501
T V+ ++++ EVD+ + Q+ ++ M+ Y SC+LIL C
Sbjct: 117 QTQNVAVTAVQDDKERKKAFKVVILTEVDRLSRDAQHALRRTMEKYMQSCRLILVCNSTT 176
Query: 502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMA 561
+I ++++ C I+V P + EI+ +L IA+KE +L A KIA + NLRKAI+
Sbjct: 177 KVIPAIRSRCLGIRVPAPSSSEIVGILNYIAKKESLNLPQELAQKIAQSSTGNLRKAILM 236
Query: 562 LEACKALNYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
LEAC+ YPF+ DQ + L WE + + A EI+ + +P++L VR ++ +LL+ V P+
Sbjct: 237 LEACRVKQYPFSADQDVILPDWEIYIRDTANEIIKEQTPQKLFDVRQRLYELLSHLVPPQ 296
Query: 621 LIL 623
LI
Sbjct: 297 LIF 299
>gi|298104116|ref|NP_001177121.1| replication factor C subunit 3 [Sus scrofa]
Length = 356
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 159/293 (54%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + +KE L A K+A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTVDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|301765690|ref|XP_002918266.1| PREDICTED: replication factor C subunit 3-like [Ailuropoda
melanoleuca]
gi|281349170|gb|EFB24754.1| hypothetical protein PANDA_006686 [Ailuropoda melanoleuca]
Length = 356
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAQRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|388453027|ref|NP_001253730.1| replication factor C subunit 3 [Macaca mulatta]
gi|402901747|ref|XP_003913802.1| PREDICTED: replication factor C subunit 3-like [Papio anubis]
gi|67970669|dbj|BAE01677.1| unnamed protein product [Macaca fascicularis]
gi|355700922|gb|EHH28943.1| Activator 1 subunit 3 [Macaca mulatta]
gi|355754623|gb|EHH58524.1| Activator 1 subunit 3 [Macaca fascicularis]
gi|380815322|gb|AFE79535.1| replication factor C subunit 3 isoform 1 [Macaca mulatta]
gi|383414017|gb|AFH30222.1| replication factor C subunit 3 isoform 1 [Macaca mulatta]
Length = 356
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQATQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|444707055|gb|ELW48364.1| Replication factor C subunit 3 [Tupaia chinensis]
Length = 356
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPSSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQSITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTI 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|405950338|gb|EKC18333.1| Replication factor C subunit 3 [Crassostrea gigas]
Length = 354
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 160/289 (55%), Gaps = 12/289 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+PSSLN H+ +A LLK+LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKHRPSSLNKLDYHKDQATLLKKLVHGGDFPHLLVYGPSGAGKKTRIMCLLRELYGS 62
Query: 407 AC-------WNEKWPT--QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEI-RDNLAI 455
N P+ ++ + SS +H+E+N ++ + + L+K + + N
Sbjct: 63 GVEKLRIEQHNFTTPSNKKIEISTISSNYHIEVNPSDVGIQDRVVIQELIKTVAQTNNLD 122
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I ++++ C I+
Sbjct: 123 SSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCVSTSKVIPAIRSRCLGIR 182
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P EI ++L + +KE + A ++A K+K+NLR+A++ EACK P D
Sbjct: 183 VAAPSIDEITQILQTVCKKEGCPIPTELAKRVAEKSKRNLRRALLMAEACKVQQTPLKPD 242
Query: 576 QPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q + WE L E A I+ SP+RL+ VRG++ +LL + +I+
Sbjct: 243 QEVSEPDWEVYLRETANMIIQQQSPRRLLEVRGRLYELLTHCIPADIIM 291
>gi|4506489|ref|NP_002906.1| replication factor C subunit 3 isoform 1 [Homo sapiens]
gi|332242266|ref|XP_003270307.1| PREDICTED: replication factor C subunit 3 isoform 1 [Nomascus
leucogenys]
gi|426375153|ref|XP_004054410.1| PREDICTED: replication factor C subunit 3 isoform 1 [Gorilla
gorilla gorilla]
gi|3915601|sp|P40938.2|RFC3_HUMAN RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|18921089|gb|AAL82505.1|AF484446_1 replication factor C (activator 1) 3 (38kD) [Homo sapiens]
gi|1498259|gb|AAB07268.1| replication factor C, 38-kDa subunit [Homo sapiens]
gi|12652795|gb|AAH00149.1| Replication factor C (activator 1) 3, 38kDa [Homo sapiens]
gi|60812373|gb|AAX36209.1| replication factor C 3 [synthetic construct]
gi|119628942|gb|EAX08537.1| replication factor C (activator 1) 3, 38kDa, isoform CRA_a [Homo
sapiens]
gi|119628943|gb|EAX08538.1| replication factor C (activator 1) 3, 38kDa, isoform CRA_a [Homo
sapiens]
gi|123980104|gb|ABM81881.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|123994885|gb|ABM85044.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|261860576|dbj|BAI46810.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
Length = 356
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|403286412|ref|XP_003934486.1| PREDICTED: replication factor C subunit 3-like [Saimiri boliviensis
boliviensis]
Length = 356
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I+++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|84370117|ref|NP_001033636.1| replication factor C subunit 3 [Bos taurus]
gi|426236447|ref|XP_004012180.1| PREDICTED: replication factor C subunit 3 [Ovis aries]
gi|108860923|sp|Q2TBV1.1|RFC3_BOVIN RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|83638731|gb|AAI09607.1| Replication factor C (activator 1) 3, 38kDa [Bos taurus]
gi|296481817|tpg|DAA23932.1| TPA: replication factor C subunit 3 [Bos taurus]
gi|440909972|gb|ELR59817.1| Replication factor C subunit 3 [Bos grunniens mutus]
Length = 356
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 160/293 (54%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|355716184|gb|AES05530.1| replication factor C 3, 38kDa [Mustela putorius furo]
Length = 374
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 22 LWVDKYRPCSLGRLDYHKELAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 81
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 82 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 141
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 142 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 201
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF+
Sbjct: 202 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFSA 261
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 262 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 311
>gi|54696202|gb|AAV38473.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|60824442|gb|AAX36680.1| replication factor C 3 [synthetic construct]
gi|61364953|gb|AAX42630.1| replication factor C [synthetic construct]
gi|61367122|gb|AAX42955.1| replication factor C 3 [synthetic construct]
gi|61371558|gb|AAX43689.1| replication factor C 3 [synthetic construct]
Length = 357
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|427795367|gb|JAA63135.1| Putative replication factor c subunit rfc3, partial [Rhipicephalus
pulchellus]
Length = 382
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 169/315 (53%), Gaps = 38/315 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P++L+ H+ +A LK+LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 5 LWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELYGA 64
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVEL-------------------NVNLQANA 438
+ Q + + +S +H+E+ N +++ N
Sbjct: 65 GVERLRIEHQNFVTPSKKKIEIVTVASNYHIEVNPSEAGIHXXKIEIVTVASNYHIEVNP 124
Query: 439 KYALMG---LVKEIRDNLAITPEV-SNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTD 489
A + +++E+ +A T ++ SNA ++++ EVDK + Q+ ++ M+ Y
Sbjct: 125 SEAGIHDRVVIQELLKTVAQTQQLESNAQREFKVVILTEVDKLTKDAQHALRRTMEKYMA 184
Query: 490 SCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIAT 549
+C+LILCC +I ++++ C I+V P E++ VL +ARKE L T A IA
Sbjct: 185 TCRLILCCNSCSKVIPAIRSRCLAIRVAAPSVDEVITVLNLVARKEGITLPDTLAQAIAA 244
Query: 550 KAKQNLRKAIMALEACKALNYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGK 608
++ +NLR+A++ LEAC+A YPF+D+Q + WE L E A I+ + S KRL VR +
Sbjct: 245 QSHRNLRRAVLMLEACRAQQYPFSDNQKVRQPDWELYLEETAKMIVQEQSVKRLSEVRAR 304
Query: 609 IQKLLAEFVHPKLIL 623
+ +LL + P +IL
Sbjct: 305 LYELLTHLIPPDVIL 319
>gi|327268843|ref|XP_003219205.1| PREDICTED: replication factor C subunit 3-like [Anolis
carolinensis]
Length = 356
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 161/293 (54%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P+SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKHRPTSLGKLDYHKEQAARLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q++ + +S +H+E+N ++A + +++E+ +A +
Sbjct: 63 GVEKLRIEHQIITAPSKKKIEISTIASNYHLEVN---PSDAGISDRVVIQELLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSTQRDFKVVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + +KE L A +IA K+ +NLRKA++ EAC+ +P
Sbjct: 180 LAVRVPAPSIGDICSVLSNVCKKEGLVLPQELAQRIAEKSGRNLRKALLMCEACRVQQHP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DQ I WE L E A I+++ +P+RL VRG++ +LL + P++I+
Sbjct: 240 FTPDQDISETDWEVYLRETANAIVSEQTPQRLFEVRGRLYELLTHCIPPEIII 292
>gi|61367115|gb|AAX42954.1| replication factor C 3 [synthetic construct]
Length = 357
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWLDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|41393079|ref|NP_958865.1| replication factor C subunit 3 [Danio rerio]
gi|27503431|gb|AAH42327.1| Replication factor C (activator 1) 3 [Danio rerio]
gi|182891582|gb|AAI64808.1| Rfc3 protein [Danio rerio]
Length = 356
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL H+ +A LK LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ Q + + +S +H+E+N + N+ + + L+K + + I
Sbjct: 63 GVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++++ EVD+ + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 SSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ VL + RKE L A +IA K+ +NLRKA++ EAC+ YPF+
Sbjct: 183 RVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSP 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ SP+RL+ VR ++ +LL + P++I+
Sbjct: 243 DQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIM 292
>gi|431903108|gb|ELK09284.1| Replication factor C subunit 3 [Pteropus alecto]
Length = 356
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSSVCKKEGLTLPPQLAYRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ +P WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEVPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|296203698|ref|XP_002749009.1| PREDICTED: replication factor C subunit 3 [Callithrix jacchus]
Length = 356
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTV 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|62896703|dbj|BAD96292.1| replication factor C 3 isoform 1 variant [Homo sapiens]
Length = 356
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTTTTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEGICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|158299762|ref|XP_319799.4| AGAP009047-PA [Anopheles gambiae str. PEST]
gi|157013673|gb|EAA14768.4| AGAP009047-PA [Anopheles gambiae str. PEST]
Length = 358
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 159/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W D+++P L H+ +A L L G+ PH++ G SG+GK+ + LL E+YG
Sbjct: 3 LWVDRYRPRELAKLDYHKPQASQLINLCSQGDFPHLMFYGPSGAGKKTRIICLLRELYGP 62
Query: 406 ------DACWNEKWPT--QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ N P+ ++ + SS +H+E+N ++ + + ++K+I I
Sbjct: 63 GVERLRNEVMNFTTPSNKKIEIMTVSSNYHIEVNPSDVGIYDRVVITDMIKQIAQTQQID 122
Query: 457 PEVSNAM--IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P IV+ EVD+ + Q+ ++ M+ Y +C+LILC II +VK+ C I
Sbjct: 123 PSGQREFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLILCVNSTSRIIPAVKSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ ++ I +KE+ + A +IA K+++NLR+AI+ LEACK + YPF
Sbjct: 183 RVSAPTEDEIVSIMNSICKKENLHIPPELATRIAQKSERNLRRAILTLEACKVMQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q IP + W+ L E A I+ + +P+R+ +VR ++ +LL++ + P +I
Sbjct: 243 NQEIPDMDWQTYLKETANMIVQEQTPQRMEVVRERLYELLSQGIPPDIIF 292
>gi|156230598|gb|AAI52282.1| Replication factor C (activator 1) 3 [Danio rerio]
Length = 356
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL H+ +A LK LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ Q + + +S +H+E+N + N+ + + L+K + + I
Sbjct: 63 GVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++++ EVD+ + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 SSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ VL + RKE L A +IA K+ +NLRKA++ EAC+ YPF+
Sbjct: 183 RVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSP 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ SP+RL+ VR ++ +LL + P++I+
Sbjct: 243 DQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPEVIM 292
>gi|318904079|ref|NP_001187655.1| replication factor C subunit 3 [Ictalurus punctatus]
gi|308323615|gb|ADO28943.1| replication factor c subunit 3 [Ictalurus punctatus]
Length = 356
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL H+ +A LK LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPTSLAKLDYHKEQANHLKSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ Q +V +S +H+E+N + N+ + + L+K + + I
Sbjct: 63 GVEKLRIEHQSIVAPSKKKIEINAIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++++ EVD+ + Q++++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 SSTQREFKVVLLTEVDRLTKDAQHVLRRTMEKYMGTCRLILCCNSTSKVISPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T E+ V++ + +KE L A +IA K+ +NLRKA++ EAC+ YPF+
Sbjct: 183 RVPLPSTEEVCSVMMSVCKKEGLILPPELAKRIAEKSGRNLRKALLMCEACRVQQYPFSA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I+ SP+RL+ VR ++ +LL + ++I+
Sbjct: 243 DQDIPETDWEVYLRETANAIVNQQSPQRLLEVRARLYELLTHCIPAEIIM 292
>gi|395855456|ref|XP_003800177.1| PREDICTED: replication factor C subunit 3 [Otolemur garnettii]
Length = 356
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ + + + +S +H+E+N + N + + ++K + L
Sbjct: 63 GVEKLRIEHETITTPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLTLPSQLARRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|301092501|ref|XP_002997106.1| replication factor C subunit 3 [Phytophthora infestans T30-4]
gi|262111642|gb|EEY69694.1| replication factor C subunit 3 [Phytophthora infestans T30-4]
Length = 352
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 165/298 (55%), Gaps = 22/298 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL+ H + L L + PH+L+ G SG+GK+ MALL +YGD
Sbjct: 2 LWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGD 61
Query: 407 ACWNEKW----------PTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEI-RDNLA 454
+ T+V + +S H+E+N ++ N + + ++KEI + +LA
Sbjct: 62 GALKVRLEHKSFKAPNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQYHLA 121
Query: 455 ITPEVSNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
T NA ++++ EVD+ +++ Q+ ++ M+ YT +C+LILCC + +I+ +++
Sbjct: 122 DT----NAHRPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRS 177
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
C ++V P T +I +L + KE D +IA K+++NLR+A++ LE C+ N
Sbjct: 178 RCLGVRVGAPTTDDICTILQGVCSKEGLDYCAPLGKEIALKSERNLRRALLMLETCRVQN 237
Query: 570 YPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
YPF+ DQ I L WEE + LA +L + SP L+ R I +L++ V ++IL V+
Sbjct: 238 YPFSPDQQIQLPAWEEYICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVL 295
>gi|221121640|ref|XP_002167209.1| PREDICTED: replication factor C subunit 3-like [Hydra
magnipapillata]
Length = 355
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P++L+ H +A LK+LV + + PH+LI G SG+GK+ M +L E+YG
Sbjct: 3 LWIDKHRPTNLSKLTYHLEQAGRLKKLVNNADFPHLLIYGPSGAGKKTRIMCILRELYGA 62
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
K Q + + SS +H+E+N + + + L+K L
Sbjct: 63 GVEKVKLEQQSYLTPSKKKIEISSISSNYHIEINPSDAGIYDRVVIQELIKTTAQTHQLD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
T + S +I++ EVD+ + Q+ ++ M+ Y +C+LILCC +I ++++ C I
Sbjct: 123 STSQKSFKVILLMEVDRLTKDAQHALRRTMEKYVATCRLILCCNSTSKVISAIQSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T E+++ L + +KE +L A +IA KA+ N+R+A++ EAC+ YPF
Sbjct: 183 RVPSPSTEEVVQTLNSVCKKEGLNLPSELANRIAQKAEGNMRRALLMCEACRVQQYPFTA 242
Query: 575 DQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ I WE L + A I+ +P+RL+ +R +I +LL + ++I+
Sbjct: 243 DQSIQEADWETYLKQTANMIIEQQTPQRLMEIRTRIYELLTHCIPAEVII 292
>gi|217071788|gb|ACJ84254.1| unknown [Medicago truncatula]
Length = 262
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 145/258 (56%), Gaps = 16/258 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + H AQ LK+LV + +CPH+L G SG+GK+ L MALL +++G
Sbjct: 2 LWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGP 61
Query: 407 A-----CWNEKWPTQ-------VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N W + + SSA+H+E+ + +Y + ++KE+ N
Sbjct: 62 GAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++V+ +VDK + Q+ ++ M+ Y+ C+L+LCC + E++++ C
Sbjct: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++++ P +I+EVL I +KE L + AA+IA K+ +NLR+AI++ E C+ YP
Sbjct: 182 LNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYP 241
Query: 572 FADDQPI-PLGWEEVLIE 588
F D Q I P+ WEE + E
Sbjct: 242 FTDKQTIPPMDWEEYISE 259
>gi|344275394|ref|XP_003409497.1| PREDICTED: replication factor C subunit 3 [Loxodonta africana]
Length = 356
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 157/293 (53%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRMEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK Q+ ++ M+ Y +C+LIL C +I +++ C
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTRDAQHALRRTMEKYMSTCRLILYCTSTSKVIAPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + RKE L A ++A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCRKEGLTLPAQLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DQ IP WE L E A I++ SP+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTADQDIPESDWEVYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIM 292
>gi|354499511|ref|XP_003511852.1| PREDICTED: replication factor C subunit 3-like [Cricetulus griseus]
gi|344256817|gb|EGW12921.1| Replication factor C subunit 3 [Cricetulus griseus]
Length = 356
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 159/293 (54%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLARLDYHKGQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVI---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + +KE L A ++A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEDICNVLSTVCKKEGLALPSKLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +DQ IP WE L E A I++ +P+RL+ VRG++ +L + P++I+
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELPTHCIPPEIIM 292
>gi|66800141|ref|XP_628996.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74996427|sp|Q54BN3.1|RFC3_DICDI RecName: Full=Probable replication factor C subunit 3; AltName:
Full=Activator 1 subunit 3
gi|60462442|gb|EAL60663.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL+ H + LK ++ G+ PH+L+ G SG+GK+ +A+L EIYG
Sbjct: 2 LWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGP 61
Query: 407 ACWNEKW-------PT---QVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAI 455
K PT + + SS +H+E+N + + + ++KEI + I
Sbjct: 62 NALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPI 121
Query: 456 TPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
A ++++ EVDK ++ Q+ ++ M+ Y C+LILCC+ +I+ +K+ C
Sbjct: 122 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P EI +VL ++A E FDL A +A ++ NLR A+M LE+ KA YPF
Sbjct: 182 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 241
Query: 574 DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ L WE + ++ + + SP RL +VRGK+ +LL + P+LI
Sbjct: 242 STELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIF 291
>gi|321478378|gb|EFX89335.1| hypothetical protein DAPPUDRAFT_190647 [Daphnia pulex]
Length = 355
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 164/294 (55%), Gaps = 21/294 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H + + L+++V GN PH+LI G G+GK+ ALL E+YG
Sbjct: 3 LWVDKYRPNTLAKLDFHLEQGERLQKMVTKGNFPHLLIYGPPGAGKKTRVSALLRELYGP 62
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA--- 454
+ Q + V +S +H+E+N N +A +++E+ N+A
Sbjct: 63 GVEKLRMEHQNFTTPSNKKIEVMTVASNYHIEVNPN---DAGIYDRIVIQEMIKNIAQAQ 119
Query: 455 ---ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + ++++ EVDK + Q+ ++ M+ Y +C+LILC II +++ C
Sbjct: 120 QLDIGGQREFKVVILTEVDKLTKDAQHALRRTMEKYMTTCRLILCANSTSKIIAPLQSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+V P +I++VL +++KE L FA ++A ++++NLR+A++ LEACK YP
Sbjct: 180 LAIRVPAPSQDDIIKVLQMVSKKEGITLPADFAIRLAERSERNLRRALLMLEACKVQQYP 239
Query: 572 FADDQPI--PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F+ Q I P WE L E +++++ SPK L+ VRG+I +LL+ + P++I+
Sbjct: 240 FSVKQEIVEP-DWEVYLRETGQKMVSEQSPKALLEVRGRIYELLSHCIAPEMII 292
>gi|410926989|ref|XP_003976950.1| PREDICTED: replication factor C subunit 3-like [Takifugu rubripes]
Length = 356
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL+ H+ +A L+ LV G+ PH+L+ G SG GK++ M LL E+YG
Sbjct: 3 LWVDKYRPTSLSKLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGGGKKSRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ Q LV +S +H+E+N + N + + L+K + + I
Sbjct: 63 GVEKLRMEHQTLVAPSKKKIEINTIASNYHLEVNASDAGNQDRVVIQELIKTVAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++++ EVD+ + Q+ ++ M+ YT +C+LILC +I +++ C I
Sbjct: 123 SSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYTATCRLILCSTSTSKVIGPIRSRCLAI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T E+ VL + +KE L A +I+ ++ +NLRKA++ EAC+ YPF+
Sbjct: 183 RVPLPSTEEVCSVLTAVCKKEGLLLPPELAKQISERSGRNLRKALLMCEACRVQQYPFSA 242
Query: 575 DQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP+ W L E A I++ SP+RL+ VR ++ +LL + P +I+
Sbjct: 243 DQEIPVADWVIYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPDVIM 292
>gi|357625732|gb|EHJ76077.1| putative Replication factor C subunit 3 [Danaus plexippus]
Length = 355
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 157/294 (53%), Gaps = 21/294 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P L H+ +A LK LV + PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKHRPKDLMKLDYHKDQAVRLKSLVQQSDFPHLLVYGPSGAGKKTRIMCLLRELYGS 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ T ++ + SS +H+E+N ++ + + +M LVK N+A T
Sbjct: 63 GSERLRQETMHFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVK----NVAQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
++ +A ++++ EVD + Q+ ++ M+ Y +C+LIL +I ++++
Sbjct: 119 HQIDSAGQREFKVVILNEVDDLTKDAQHALRRTMEKYVSTCRLILIANSISRVITAIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C I+V P EI VL + +KE L A +IA A +NLR+A++ EACK +Y
Sbjct: 179 CLTIRVPAPTETEIASVLHAVCKKEGLSLPSELAMRIAKSADRNLRRALLMCEACKVQHY 238
Query: 571 PFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PF DQ +P W+ + + AA IL++ SPK+L VR K+ +L+ V P +I
Sbjct: 239 PFTSDQKVPEPDWQIFIRDTAAMILSEQSPKKLAEVRQKLYELIIHGVPPDVIF 292
>gi|225709786|gb|ACO10739.1| Replication factor C subunit 3 [Caligus rogercresseyi]
Length = 357
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 164/294 (55%), Gaps = 17/294 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+ L+ +A L+ LV + PH+L+ G SG+GK+ +ALL E+YG
Sbjct: 3 LWVDKYRPTKLSKLDYGLSQASYLETLVKGVDFPHLLVHGPSGAGKKTRVLALLRELYGP 62
Query: 407 AC-------WNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459
N P++ + + + A + + VN Y + +++E+ N A + ++
Sbjct: 63 GVERLRLEHRNFVTPSKKKLEIMTMASNYHIEVNPSDVGIYDRV-VIQELIKNTASSQQI 121
Query: 460 SNA--------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+ ++++ EVDK + Q+ ++ M+ YT +C+LILC +I ++++ C
Sbjct: 122 HGSDSGKADFKVVILTEVDKLTKDAQHALRRTMEKYTSTCRLILCANSTSKVIPAIRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+V P E+ +++I +A+KE L A +IA ++++NLR+A++ EACK YP
Sbjct: 182 LSIRVPAPSIAEVTQIIISVAKKEGCQLPQELAKRIAERSQRNLRRALLLTEACKVKQYP 241
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
F DDQ I L WE L E A+ I+++ +PKRL+ VRG++ +LL+ + +I +
Sbjct: 242 FTDDQDIVDLDWEVYLRETASMIVSEQTPKRLLDVRGRLYELLSHCIPADVIFV 295
>gi|157116416|ref|XP_001658466.1| Rfc5p, putative [Aedes aegypti]
gi|108876490|gb|EAT40715.1| AAEL007581-PA [Aedes aegypti]
Length = 358
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W D+++P L+ H+ +A L L G+ PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDRYRPRELSKLDYHKTQATHLTNLCAQGDFPHLMFYGPSGAGKKTRIMCLLRELYGS 62
Query: 406 ------DACWNEKWPT--QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ N P+ +V + SS +H+E+N + + + ++K+I I
Sbjct: 63 GVERLRNEVMNFTTPSNRKVEIMTVSSNYHIEVNPSDAGIYDRVVITDMIKQIAQTQQID 122
Query: 457 PEVSNAM--IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P IV+ EVD+ + Q+ ++ M+ Y +C+L+LC +I +VK+ C I
Sbjct: 123 PSGQREFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRVIPAVKSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L I +KE + A +I K+++NLR+AI+ LEACK YPF
Sbjct: 183 RVSAPTNEEIVSILNNICKKEGLHIPSELATRITEKSERNLRRAILMLEACKVQQYPFTV 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q +P + W+ L E A +I+ + SP++L VR ++ +LL++ V +I
Sbjct: 243 NQEVPEIDWQVFLRETANQIVQEQSPQKLEAVRERLYELLSQGVPSDIIF 292
>gi|308321967|gb|ADO28121.1| replication factor c subunit 3 [Ictalurus furcatus]
Length = 356
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A LK LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPMSLAKLDYHKEQANQLKSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ Q +V +S +H+E+N + N+ + + L+K + + I
Sbjct: 63 GVEKLRIEHQSIVAPSKKKIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++++ E D+ + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 SSTQREFKVVLLTEADRLTKDAQHALRRTMEKYMGTCRLILCCNSTSKVISPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T E+ VL+ + +KE L A +IA K+ +NLRKA++ EAC+ YPF+
Sbjct: 183 RVPLPSTEEVCSVLMSVCKKEGLILPTELAKRIAEKSGRNLRKALLMCEACRVQQYPFSA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I+ SP+RL+ VR ++ +LL + ++I+
Sbjct: 243 DQDIPETDWEVYLRETANVIVNQQSPQRLLEVRARLYELLTHCIPAEIIM 292
>gi|410947258|ref|XP_003980368.1| PREDICTED: replication factor C subunit 3 [Felis catus]
Length = 351
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 154/285 (54%), Gaps = 8/285 (2%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVLV-PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN---- 461
+ Q + P + L ++A + +++E+ +A + ++
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEIXTIIFVLYSDAGNSDRVVIQEMLKTVAQSQQLETNSQR 122
Query: 462 --AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C ++V P
Sbjct: 123 DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAP 182
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP 579
+I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF DQ IP
Sbjct: 183 SIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIP 242
Query: 580 -LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 ETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 287
>gi|432895956|ref|XP_004076244.1| PREDICTED: replication factor C subunit 3-like [Oryzias latipes]
Length = 356
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL H+ +A LK LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPTSLGKLDYHKEQATQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ +V +S +H+E+N + N + + L+K + + I
Sbjct: 63 GVEKLRIEHHTIVAPSKKKIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++++ EVD+ + Q+ ++ M+ Y +C+LILC +I +++ C +
Sbjct: 123 SSTQREFKVVILTEVDRLTKDAQHALRRTMEKYMSTCRLILCSTSTSKVIGPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T E+ VL + +KE +L A +I+ K+ +NLRKA++ EAC+ YPF+
Sbjct: 183 RVPLPSTEEVCSVLTSVCKKEGLNLPPELAKQISEKSGRNLRKALLMCEACRVQQYPFSA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ +P WE L E A I++ +P+RL+ VR ++ +LL + P++I+
Sbjct: 243 DQEVPETDWEVYLRETANAIVSQQNPQRLLEVRARLYELLTHCIPPEIIM 292
>gi|330801755|ref|XP_003288889.1| replication factor C subunit [Dictyostelium purpureum]
gi|325081034|gb|EGC34565.1| replication factor C subunit [Dictyostelium purpureum]
Length = 349
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 160/294 (54%), Gaps = 21/294 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL+ H+ + LK ++ G+ PH+L+ G SG+GK+ +A+L EIYG
Sbjct: 2 LWIDKYKPSSLDKMDYHKDISANLKNMIKSGDFPHLLVYGPSGAGKKTRILAILQEIYGV 61
Query: 407 AC-------WNEKWPTQ---VLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAI 455
K PT + + SS +H+E++ + + + ++KEI A
Sbjct: 62 NVNKLKIDHRTFKHPTSSKSIQITTISSHYHIEISPGEAGSYDRVVIQTIIKEI----AQ 117
Query: 456 TPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
+P + NA ++++ EVDK ++ Q+ ++ M+ Y C+LILCC+ +I+ +K+
Sbjct: 118 SPPIENADLGPFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKS 177
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
C I++ P EI +VL ++A+ E F+L + IA + NLR A++ LE+ KA
Sbjct: 178 RCLGIRIPAPTNEEIEKVLSKVAQSEKFELPSKLSQNIANQCNGNLRYALLLLESQKAKQ 237
Query: 570 YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
YPF + L WE + ++ +I + SP +L+++R K+ +LL + P LI
Sbjct: 238 YPFQSSEIPLLDWENYISQIVNDIFQEQSPAKLLVIRAKLYELLGHCIPPDLIF 291
>gi|343113487|gb|AEL87702.1| replication factor C 3 [Strongylocentrotus nudus]
Length = 334
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 152/287 (52%), Gaps = 28/287 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW DKH+P+SL+ H+ +A LK+LV G+ PH+++ G SG+GK+ M L E+YG
Sbjct: 3 FWVDKHRPTSLSKLDYHKEQASNLKKLVQSGDFPHLMVYGPSGAGKKTRIMCALKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + +S +H+E+N + I D + I
Sbjct: 63 GVEKLRIEQQTFTTPSKSKIEITTIASNYHIEVNPSDAG------------IYDRIVIQD 110
Query: 458 EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVD 517
+ N +++ +A+ + + +T +C+LILCC +I ++++ C ++V
Sbjct: 111 LIRNTA-QFQQMETSAQSAGH-----GEVHTATCRLILCCNSTSKVIPAIRSRCLGVRVA 164
Query: 518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577
P EI ++L + +KE +L A +IA K+++NLRKAI++ EACK YPF+ DQ
Sbjct: 165 APSIAEITQILQNVCKKEGLNLPSELAKRIAEKSERNLRKAILSCEACKVQQYPFSADQD 224
Query: 578 IPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
IP WE L E A I+ SP++L+ VRG++ +LL + P +IL
Sbjct: 225 IPEADWEGFLRETANHIIQQQSPRQLLEVRGRMYELLTHCIPPDVIL 271
>gi|156383529|ref|XP_001632886.1| predicted protein [Nematostella vectensis]
gi|156219948|gb|EDO40823.1| predicted protein [Nematostella vectensis]
Length = 355
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 154/291 (52%), Gaps = 15/291 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL H+ A LK+LV G+ PH+L+ G SG+GK+ +L E+YG
Sbjct: 3 LWVDKYRPTSLGKLDYHKDLAAHLKKLVHSGDFPHLLVYGPSGAGKKTRITCILRELYGS 62
Query: 407 ACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDN------L 453
K P+ V +++ L VN Y + +V+E+ N L
Sbjct: 63 GVEKLKIEHHSFTTPSNKKVEISTIGSIFHLEVNASDVGIYDRV-VVQELLKNTAQAHSL 121
Query: 454 AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
++ ++V+ EVD+ + Q+ ++ M+ YT +C+LILCC +I ++++ C
Sbjct: 122 ELSAHRDFKVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNSTSKVIPAIRSRCLG 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
+++ P EI ++L + +KE + + +IA K+ +NLRKA++ EACK YPF
Sbjct: 182 VRIPAPSVEEICQILQFVCKKEGLTIPSELSRRIAEKSGRNLRKALLMCEACKVQQYPFT 241
Query: 574 DDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQP+ WE L E A +I+ +P+RL +RG++ +LL + +I+
Sbjct: 242 PDQPVQEADWEMYLRETAQQIVQTQTPRRLYEIRGRLYELLTHCIPADIII 292
>gi|348667977|gb|EGZ07802.1| hypothetical protein PHYSODRAFT_340838 [Phytophthora sojae]
Length = 352
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 161/294 (54%), Gaps = 14/294 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL H + L L + PH+L+ G SG+GK+ MALL +YGD
Sbjct: 2 LWVDKYRPTSLGELDFHPEVTKRLTNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGD 61
Query: 407 ACWNEKW----------PTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEI-RDNLA 454
+ T+V + +S H+E+N ++ N + + ++KEI + ++A
Sbjct: 62 GALKVRLEHKAFKAPHRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQKVLKEIAQYHMA 121
Query: 455 IT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
T + ++++ EVD+ ++ Q+ ++ M+ YT +C+L+LCC + +I+ +++ C
Sbjct: 122 DTNSQRPFKVVLLMEVDRLSKGAQHALRRTMEKYTATCRLVLCCNNPSKVIDPLRSRCLG 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
++V P T EI VL + KE +IA K+++NLR+A++ LE C+ NYPF+
Sbjct: 182 VRVGAPTTDEICGVLQGVCSKEGLAYCAPLGQEIAVKSERNLRRALLMLETCRVQNYPFS 241
Query: 574 DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
DQ I L WEE + L+ +L + SP L+ R I +L++ V ++IL V+
Sbjct: 242 PDQQIQLPAWEEYICSLSKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVL 295
>gi|225713906|gb|ACO12799.1| Replication factor C subunit 3 [Lepeophtheirus salmonis]
Length = 296
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 164/297 (55%), Gaps = 20/297 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+ LN +A L+ LV + PH+LI G SG+GK+ +ALL E+YG
Sbjct: 3 LWVDKYRPNKLNKLDFGLKQAAYLETLVKSEDFPHLLIHGPSGAGKKTRIVALLRELYGP 62
Query: 407 AC-------WNEKWPTQ--VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
N + P++ + + +S +H+ELN ++ + + L+K I
Sbjct: 63 GVERLRIEHQNFETPSKKKLEIMTIASNYHIELNPSDVGIYDRVVIQELIKNTASAQQIH 122
Query: 456 --TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ S ++++ EVDK + Q+ ++ M+ YT +C+LILC II ++K+ C
Sbjct: 123 GDSQRASFKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSRCLS 182
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I++ P +I+++L+ +++KE L M A +I K+ +NLR+A++ EACK YPF
Sbjct: 183 IRIPAPSADDIIQILVTVSKKEGCLLPMELARRITEKSNRNLRRALLLTEACKVKQYPFV 242
Query: 574 DDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHYI 629
D Q I L WE L + A I+++ +PK+L+ VRG++ +LL ++ L+M ++
Sbjct: 243 DGQDIVDLDWEVYLKDTARMIVSEQTPKKLLEVRGRLYELLV------IVFLLMKFL 293
>gi|348541665|ref|XP_003458307.1| PREDICTED: replication factor C subunit 3-like [Oreochromis
niloticus]
Length = 356
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A LK+LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPSSLGKVDFHKEQAAQLKKLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ Q +V +S +H+E+N + N + + L+K + + I
Sbjct: 63 GVEKLRIEHQTIVAPSKKKIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++++ EVD+ + Q+ ++ M+ Y +C+LILC +I +++ C I
Sbjct: 123 SSTQRDFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCSTSTSKVIGPIRSRCLAI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ VL + +KE L A +I+ K+ +NLRKA++ EAC+ YPF+
Sbjct: 183 RVPLPSIEEVCSVLTSVCKKEGLVLPPELAKQISEKSGRNLRKALLMCEACRVQQYPFSV 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ +P WE L E A I++ +P+RL+ VR ++ +LL + P++I+
Sbjct: 243 DQDVPETDWEVYLRETANAIVSQQTPQRLLEVRARLYELLTHCIPPEIIM 292
>gi|26335097|dbj|BAC31249.1| unnamed protein product [Mus musculus]
Length = 270
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 144/268 (53%), Gaps = 13/268 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + RKE L T A ++A K+ +NLRKA++ EAC+ YPF +
Sbjct: 183 RVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTE 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKR 601
DQ IP WE L E A I++ +P+R
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQR 270
>gi|148673951|gb|EDL05898.1| mCG17786, isoform CRA_b [Mus musculus]
Length = 289
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 144/268 (53%), Gaps = 13/268 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 22 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 81
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 82 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 141
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 142 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 201
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + RKE L T A ++A K+ +NLRKA++ EAC+ YPF +
Sbjct: 202 RVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTE 261
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKR 601
DQ IP WE L E A I++ +P+R
Sbjct: 262 DQEIPETDWEVYLRETANAIVSQQTPQR 289
>gi|241237969|ref|XP_002401228.1| replication factor C, subunit RFC3, putative [Ixodes scapularis]
gi|215496129|gb|EEC05770.1| replication factor C, subunit RFC3, putative [Ixodes scapularis]
Length = 353
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 148/289 (51%), Gaps = 12/289 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P SL H+ +A LK+LV G+ PH+L+ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKHRPVSLAKLDYHKEQATYLKKLVQGGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQ---------VLVPVASSAHHVELNVNLQANAKYALMGLVKEI--RDNLAI 455
+ Q V + +S +H+E+N + ++ I R
Sbjct: 63 GVERLRIEHQNFVTPSKKKVDIVTVASNYHIEVNPRKACSHVTSVSHDCPHIIVRGKGLT 122
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
A++++ EVDK Q+ ++ M+ Y SC+LILCC +I ++++ C ++
Sbjct: 123 AACAPLAVVLLAEVDKLTREAQHALRRTMEKYMASCRLILCCNSCSKVIPAIRSRCLGVR 182
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P ++ +VL + RKE L A +A ++ +NLR+A++ LEAC+ YPF+
Sbjct: 183 VAAPSLDQVADVLRLVCRKEGLQLPDALAQSVAAQSGRNLRRALLMLEACRVQQYPFSAT 242
Query: 576 QPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q + WE L A ++ + SPKRL VRG++ +LL + P +I
Sbjct: 243 QEVRRPDWEVFLAATAHMVVQEQSPKRLFEVRGRLYELLTHLIPPDVIF 291
>gi|291001551|ref|XP_002683342.1| predicted protein [Naegleria gruberi]
gi|284096971|gb|EFC50598.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 149/297 (50%), Gaps = 20/297 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DKH+P SL H+ ++ L + G+ PH+LI G SG+GK+ ALL EIY
Sbjct: 3 LWLDKHRPMSLEKMQIHKEVSEQLMNITKSGDFPHLLIHGPSGAGKKTRIQALLREIYNN 62
Query: 406 ----------DACWNEKWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDN 452
D + V SS +H+E+ + KY + ++KE+ D+
Sbjct: 63 KIDKVKLENKDVSVGSDGSKTITVTALSSGYHLEITPSDSGYYDKYVVANMIKEVAETDS 122
Query: 453 LAITPEVSNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
+ S+A +IV++EVD Q ++ IM+ Y+ SC+LILC II +
Sbjct: 123 VDFLSTGSSASSHLKVIVLHEVDSLTREAQQALRRIMEKYSKSCRLILCANSTSKIIPPI 182
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ C +++ P EI VL +A+KE+ L +I K N+R+A++ LE+ K
Sbjct: 183 RSRCMAVRIPAPSDEEISTVLQFVAKKENIKLVPEITQQICEKCDGNMRRALLMLESAKV 242
Query: 568 LNYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
YPF DQ + L GWE+ + E+A I+AD +P+ L+ +R LL + P +I
Sbjct: 243 EQYPFTKDQQVKLPGWEKFVEEIAKSIIADQTPQTLLKIRDDFFLLLTNCIAPDIIF 299
>gi|297744802|emb|CBI38070.3| unnamed protein product [Vitis vinifera]
Length = 530
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 144/283 (50%), Gaps = 21/283 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
WADK++P +L+ FIC+R +A L++LV PH + +G +G GK+ + A L E++G
Sbjct: 233 WADKYRPKALSDFICNRDKAVQLQDLVKVEQHPHFIFEGLAGVGKKTMISAFLREVFGHD 292
Query: 408 CWNEKWPTQVLVPVASSAHHVELNV-----NLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ + S + +NV ++++ AL+ +
Sbjct: 293 RVQTREECKEFYLKGESIRSIRVNVKVSCHHIESQQGCALLNIF---------------T 337
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
IV+YE +K + KW++D Y + C D ++ +K+ C ++++ PP
Sbjct: 338 AIVLYEAEKLSTEALLYFKWLLDKYEGHNMVFFSC-SDTSKLQPIKSLCTMVQLLPPSDE 396
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW 582
EI+EVL IA++E +L A KI +K NLR+AI + EA YPF +DQ I GW
Sbjct: 397 EIVEVLELIAKQESINLPRELAEKIVGNSKNNLRQAIRSFEATWKFKYPFEEDQEIRTGW 456
Query: 583 EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLV 625
E+ + +A I+ + +PK+L +RGK+QKL V + I V
Sbjct: 457 EDDIARIAKNIIEEQTPKQLYNIRGKLQKLTEHNVASEFIYKV 499
>gi|47227059|emb|CAG00421.1| unnamed protein product [Tetraodon nigroviridis]
Length = 356
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+S++ H+ +A LK LV G+ PH+L+ G G+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPTSISKLDYHKEQAAQLKNLVQCGDFPHLLVYGPPGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ Q +V +S +H+E+N + N + + L+K + + I
Sbjct: 63 GVEKLRIEHQTVVAPSKKKIEINTIASNYHLEVNASDAGNQDRVVIQELIKTVAQSQQIQ 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++V+ EVD+ + Q+ ++ M+ Y +C+LILC +I +++ C +
Sbjct: 123 SSTQRDFKVVVLTEVDRLTKDAQHALRRTMEKYMSTCRLILCSTSTSKVIGPIQSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T E+ VL + +KE L A +I+ + +NLR+A++ EAC+ YPF+
Sbjct: 183 RVPLPSTEEVCGVLTAVCKKEGLHLPPELARQISEASGRNLRRALLMCEACRVQQYPFSA 242
Query: 575 DQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q IP+ W L E A I++ SP+RL+ VRG++ +LL + P +I+
Sbjct: 243 EQEIPVADWVIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPDVIM 292
>gi|325182836|emb|CCA17291.1| replication factor C subunit 3 putative [Albugo laibachii Nc14]
Length = 352
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 157/294 (53%), Gaps = 14/294 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK +P L+ H + L+ L + PH+L+ G SG+GK+ MALLH +YG
Sbjct: 2 LWVDKCRPDELDALTYHPQITRRLQNLSSSDDFPHLLVYGPSGAGKKTRIMALLHAMYGK 61
Query: 407 ACWNEKWP----------TQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEI-RDNLA 454
++ ++ + +S +H+E+N + N + + ++KEI + +LA
Sbjct: 62 GVRKQRLEHKSFKIPDRSVKIEITTVASNYHIEMNPSDADNQDRLIVQEVLKEIAQYHLA 121
Query: 455 IT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
T + ++++ EVD+ ++H Q+ ++ M+ YT +C+LILCC IIE +++ C
Sbjct: 122 DTKAKKPFKVVLLMEVDRLSKHAQHALRRTMEKYTATCRLILCCNSSSKIIEPLRSRCLG 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I V P EI VL + + E + KIA ++ +NLR+A++ LE C YPFA
Sbjct: 182 ICVSAPTNREICNVLESVCKNEGISYLPSLGEKIAQQSDRNLRRALLILETCHVQRYPFA 241
Query: 574 DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
+DQ I L WEE + L+ +L + SP L+ R + +LLA + ++IL V+
Sbjct: 242 EDQEIQLPAWEEYICTLSKVVLQEQSPAGLMKAREMVYELLANCIPSEIILKVL 295
>gi|290561887|gb|ADD38341.1| Replication factor C subunit 3 [Lepeophtheirus salmonis]
Length = 353
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 162/292 (55%), Gaps = 17/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+ L+ + +A L+ LV + PH+LI G SG+GK+ +ALL E+YG
Sbjct: 3 LWVDKYRPNKLDFGL---KQAAYLETLVKSEDFPHLLIHGPSGAGKKTRIVALLRELYGP 59
Query: 407 AC-------WNEKWPTQ--VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
N + P++ + + +S +H+ELN ++ + + L+K I
Sbjct: 60 GVERLRIEHQNFETPSKKKLEIMTIASNYHIELNPSDVGIYDRVVIQELIKNTASAQQIH 119
Query: 456 --TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ S ++++ EVDK + Q+ ++ M+ YT +C+LILC II ++K+ C
Sbjct: 120 GDSQRASFKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSRCLS 179
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I++ P +I+++L+ +++KE L M A +I K+ +NLR+A++ EACK YPF
Sbjct: 180 IRIPAPSADDIIQILVTVSKKEGCLLPMELARRITEKSNRNLRRALLLTEACKVKQYPFV 239
Query: 574 DDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
D Q I L WE L + A I+++ +PK+L+ VRG++ +LL + P I +
Sbjct: 240 DGQDIVDLDWEVYLKDTARMIVSEQTPKKLLEVRGRLYELLGHCIPPDEIFV 291
>gi|345492555|ref|XP_001600907.2| PREDICTED: replication factor C subunit 3-like [Nasonia
vitripennis]
Length = 355
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 153/290 (52%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL H +AQ LK +V G+ PH+LI G G+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPTSLGKLDYHTDQAQQLKNMVQQGDFPHLLIYGPPGAGKKTRIMCILKELYGS 62
Query: 407 ACWNEKW-PTQVLVP--------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ P Q P SS +H+E+N ++ + +M LVK I
Sbjct: 63 GVEKLRMEPMQFETPSKKKIEIMTISSNYHIEVNPSDVGIYDRVVVMDLVKTTAQTHQID 122
Query: 457 P--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P + ++++ VD + Q+ ++ M+ Y +C+LILC ++ ++++ C I
Sbjct: 123 PTGQREFKVVLLTNVDHLTKDAQHALRRTMEKYVGTCRLILCSNSTSRVLPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T EI +L +A+KE + A+++A + +NLR+AI+ LEACK YPF
Sbjct: 183 RVPAPTTDEIKSILHSVAKKESLTIPDELASRLAGSSGRNLRRAILMLEACKVEQYPFTA 242
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ I W+ + +A+ ++++ SP++L+ +R + +LL + LI
Sbjct: 243 DQKITEPDWQIYIKGIASMMVSEQSPRKLLEIRNRFYELLTHAIPTDLIF 292
>gi|170031637|ref|XP_001843691.1| replication factor C subunit 3 [Culex quinquefasciatus]
gi|167870519|gb|EDS33902.1| replication factor C subunit 3 [Culex quinquefasciatus]
Length = 358
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 151/290 (52%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W D+++P L H+ +A L L G+ PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDRYRPRELAKLDYHKTQAGHLINLCAQGDFPHLMFYGPSGAGKKTRIMCLLRELYGP 62
Query: 406 ------DACWNEKWPT--QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ N P+ +V + SS +H+E+N + + + ++K+I I
Sbjct: 63 GVERLRNEIMNFTTPSNKKVEIMTVSSNYHIEVNPSDAGIYDRVVITDMIKQIAQTQQID 122
Query: 457 PEVSNAM--IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P IV+ EVD+ + Q+ ++ M+ Y +C+L+LC +I +VK+ C I
Sbjct: 123 PSGQREFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRVIPAVKSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L I +KE + A +I K+ +NLR+AI+ LEACK YPF
Sbjct: 183 RVSAPTGEEIVGILNNICKKEGLHIPPELATRITQKSDRNLRRAILMLEACKVQQYPFTV 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q +P + W+ L E A +I+ + SP +L VR ++ +LL++ V +I
Sbjct: 243 GQDVPEIDWQVFLRETANQIVQEQSPAKLEAVRERLYELLSQGVPSDVIF 292
>gi|358336212|dbj|GAA33502.2| replication factor C subunit 3/5, partial [Clonorchis sinensis]
Length = 367
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 157/291 (53%), Gaps = 15/291 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK+ P+SL H+ EA LK LV GN PH+L+ G SGSGKR M LL E+YG
Sbjct: 13 LWVDKYAPTSLQKLDYHQQEATALKNLVDSGNFPHLLVYGPSGSGKRTRIMCLLRELYGS 72
Query: 407 AC-------WNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459
N P+ V V++ + + L VN Y + +V+E+ +A T ++
Sbjct: 73 GVDRLRTETHNFLTPSNKKVTVSTVSSNFHLEVNPSEVGIYDRV-VVQELIKTMASTAQL 131
Query: 460 SNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+A ++V++E D + Q+ ++ M+ Y +C+LIL E II + ++ C
Sbjct: 132 DSAQQRDFKVVVLHEADHLTKDAQHALRRTMEKYISTCRLILSAESISKIISATRSRCLP 191
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P +I+ +L AR+E + A +IA +++NLR+A++ E K + P +
Sbjct: 192 IRVAAPSIDQIVHILKNTARREGQSMPTELAERIANASERNLRRALLLAEVAKWQHSPMS 251
Query: 574 DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+QP+ L W+ L E A+ ILA+ SP++++ +R ++ +LL+ + +I+
Sbjct: 252 AEQPVQLPDWQVFLAETASAILAEQSPRKILEIRARLYELLSHCIPTDVIM 302
>gi|223998512|ref|XP_002288929.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220976037|gb|EED94365.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 359
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 23/306 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DKH+P+ L H L+ L D G PH+L G GSGK+ ALL ++G
Sbjct: 2 LWVDKHRPTRLTQLTYHGTLTARLESLSADPGGLPHLLFYGPPGSGKKTRIAALLRSVFG 61
Query: 406 DACWNEKW-------PTQ--VLVPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNL 453
+ PT V + + SS +H+E++ + N ++ + ++KE+ N+
Sbjct: 62 HGSERLRLDKRTFTTPTNRTVEINMISSNYHIEMSPGDAGLNDRFVIQDVIKEMASSKNI 121
Query: 454 AITPEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
A +N ++V+ EVDK Q ++ M+ Y+ SC+LILCC + +I+ V++ C
Sbjct: 122 ATVGTANNEYKVVVLVEVDKLTRQAQAALRRTMEKYSSSCRLILCCNNPSKVIDPVRSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY- 570
I+V P EI VL +ARKE L A +A + +NLR+A++ LE+C
Sbjct: 182 LGIRVAAPSHDEIATVLKTVARKESITLPDELAISLARSSNRNLRRALLMLESCHVTTRD 241
Query: 571 ----PFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL-- 623
+QPIP WE + +LA+EI + SPKRL+M R K+ +LL + + IL
Sbjct: 242 DSPKELKPNQPIPHTDWERYISQLASEITREQSPKRLIMAREKLYELLINCIPAQTILKT 301
Query: 624 LVMHYI 629
LVM +
Sbjct: 302 LVMELL 307
>gi|357467569|ref|XP_003604069.1| Replication factor C subunit [Medicago truncatula]
gi|355493117|gb|AES74320.1| Replication factor C subunit [Medicago truncatula]
Length = 800
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 152/294 (51%), Gaps = 20/294 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYG 405
WA K+QP L FIC+R +A LK LV G C H + +G GKR++ A+L E++G
Sbjct: 421 LWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFG 480
Query: 406 -----------DACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKE----- 448
D + + + V S HHVE+N++ + K ++ L KE
Sbjct: 481 ADGVQVTEEYKDFNLKGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKETYGKV 540
Query: 449 IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
I +L +PE A I++YE +K + IKW+++ Y KL CC D+ ++ ++
Sbjct: 541 INSSLPCSPENCQA-IILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDE-SRLQPIQ 598
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
++C +++ P T +I+++L I ++E LS I ++K NLR+AI +LEA
Sbjct: 599 SYCTTVRLSSPSTQQIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLEATYRN 658
Query: 569 NYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLI 622
DD + GWE+ ++ +A I+ + SP++L +R K+Q L+ V P I
Sbjct: 659 KNALNDDDLVLTGWEDDILNIARNIITEQSPRQLYAIRKKLQSLMIHDVPPDFI 712
>gi|226469846|emb|CAX70204.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 302
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 157/291 (53%), Gaps = 15/291 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK+ P+SL H+ +A+ LK+L+ + PH+L+ G SG+GKR M +L E+YG
Sbjct: 3 LWVDKYTPTSLGKLDYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELYGS 62
Query: 407 ACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459
+ P+ V +++ + + L VN Y + +++E+ ++A T ++
Sbjct: 63 GVDKLRMEHHTFTNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRI-VIQELIKSMASTAQL 121
Query: 460 SNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ ++V++E D Q+ ++ M+ Y +C+LIL E II + ++ C
Sbjct: 122 DSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLP 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P T EI+E+L AR+E + A +IA +++NLR+A++ E + + P
Sbjct: 182 IRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLFAEVARWQHSPML 241
Query: 574 DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ + L W+ L E A+ ILA+ SPK+++ VR ++ +LL + P +I+
Sbjct: 242 PDQSVQLPDWQAFLSETASAILAEQSPKKILEVRNRLYELLCHCIPPNVIM 292
>gi|198425284|ref|XP_002119398.1| PREDICTED: similar to Replication factor C (activator 1) 3 [Ciona
intestinalis]
Length = 355
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SLN H +A+ LK+LV +G+ PH+L G G+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPKSLNKLDYHLEQAENLKKLVENGDFPHLLFYGPPGAGKKTRIMCLLREVYGS 62
Query: 407 AC-------WNEKWPTQVLVPVA--SSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
N P++ + +A SS +H+E+ + + + + L+K + + +
Sbjct: 63 GVEKLRIEKHNFVTPSKKKLEIAALSSNYHIEVTPSDAGMHDRVVVQELIKTVAQSHQLE 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ +IV+ EVD+ Q+ ++ M+ Y +C+LIL C +I ++++ C +
Sbjct: 123 SKAQKRFKVIVLTEVDRLTRDAQHALRRTMEKYMSTCRLILYCNSTSKVIPAIQSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +++++L + +KE + A +IA +K+NLR+A++ E C+ + P D
Sbjct: 183 RVAAPSIDDVIKILTSVGKKEGHPIPQELARRIAVASKRNLRRALLMSETCRVQHVPLTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ I WE L E A I+++ SP+RL+ +R ++ +LL + + P I+
Sbjct: 243 DQTIMEPDWELYLKETANMIVSEQSPRRLLEIRNRVYELLTKCIPPDAIM 292
>gi|256080226|ref|XP_002576383.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|353231808|emb|CCD79163.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 357
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 157/291 (53%), Gaps = 15/291 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK+ P+SL H+ +A+ LK+LV N PH+L+ G SG+GKR M +L E+YG
Sbjct: 3 LWVDKYTPTSLGKLDYHKKQAKNLKKLVDSSNFPHLLVYGPSGAGKRTRIMCILRELYGS 62
Query: 407 ACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459
+ P+ V +++ + + L VN Y + +++E+ ++A T ++
Sbjct: 63 GVDRLRMEHHTFTNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRI-VIQELIKSMASTAQL 121
Query: 460 SNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ ++V++E D Q+ ++ M+ Y +C+LIL E II + ++ C
Sbjct: 122 DSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLP 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P EI+E+L AR+E + + A +IA +++NLR+A++ E K + P
Sbjct: 182 IRVSAPSIDEIVEILRNTARREGHSMPVELAKRIALASERNLRRALLYAEVAKWQHCPML 241
Query: 574 DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ + L W+ L E A+ ILA+ SPK+++ VR ++ +LL + P +I+
Sbjct: 242 PDQSVQLPDWQVFLTETASAILAEQSPKKILEVRNRLYELLCHCIPPNIIM 292
>gi|320162792|gb|EFW39691.1| replication factor C subunit [Capsaspora owczarzaki ATCC 30864]
Length = 356
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 158/300 (52%), Gaps = 29/300 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L+ + ++ LK LV G+ PH+++ G G+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPTNLDKLDYNLTLSKQLKHLVSAGDFPHMMVYGPPGAGKKTRVMCLLRELYGP 62
Query: 407 ACWN---EKWPTQVLVPVA----------------SSAHHVELN-VNLQANAKYALMGLV 446
E +V V A +S +H+ELN + + + ++
Sbjct: 63 GVEKLKVEHRTFKVCVIAAGLQKASDDAKLEIITIASNYHIELNPSDAGTQDRLVVQDIL 122
Query: 447 KEIRDN--LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
KEI + L + S ++V+ EVDK ++ Q+ ++ M+ Y +C+LIL C ++
Sbjct: 123 KEIASSHQLDTQTQRSFKVVVLTEVDKLSKDAQHALRRTMELYVSTCRLILLCNSTSKVL 182
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+++ C I++ P E IARKE +S FA +IA + +NLRKAI++ EA
Sbjct: 183 SPIRSRCLGIRIPAPTVPE------SIARKEGISVSGDFATRIAESSDRNLRKAILSFEA 236
Query: 565 CKALNYPFADDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
C+ YPF +QPI WE + + A+EIL + SPK L+ VRG++ +LL+ + +I+
Sbjct: 237 CRVQQYPFVSNQPIQKADWEVYVEQTASEILGEQSPKCLLAVRGRMYELLSHCIPADIII 296
>gi|224071367|ref|XP_002303425.1| predicted protein [Populus trichocarpa]
gi|222840857|gb|EEE78404.1| predicted protein [Populus trichocarpa]
Length = 432
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 148/280 (52%), Gaps = 16/280 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
WA+K+QP +L FICHR +A+ ++ V G+ H + +G G GKR +A+A+L E G
Sbjct: 91 WAEKYQPKALKDFICHREKAESIRSTVCRGHYNHCIFEGPPGVGKRTMALAMLRECAG-- 148
Query: 408 CWNEKWPTQVLVPVASSAHHV-ELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ + + + E ++ +Q + + I D L T ++ I++
Sbjct: 149 -----------MDITETKEEIREFDLLIQIDLSEIRWHATEVILDLLQETY-INGQAIIV 196
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E ++ ++ Q IK + Y CK+I CC D + + + C VI + PP +I+E
Sbjct: 197 NEAERLSKDAQLRIKSFLQTYRGHCKVIFCCYD-ISRLHDLSPLCMVIPLLPPSDEQIVE 255
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL 586
VL IA+K+D +L A IA K+K+ L++AI + EA NYPF ++Q + GWE+ +
Sbjct: 256 VLHFIAKKQDIELPDQLANNIAEKSKRCLQQAIRSFEATWHSNYPFKEEQLVLTGWEKEI 315
Query: 587 IELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
++A I+ + S KRL + R K+Q LL + P+ + +
Sbjct: 316 ADIATSIIEEQSSKRLFLFRQKLQILLQHNLCPQFVFFTL 355
>gi|226469850|emb|CAX70206.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 357
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 157/291 (53%), Gaps = 15/291 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK+ P+SL H+ +A+ LK+L+ + PH+L+ G SG+GKR M +L E+YG
Sbjct: 3 LWVDKYTPTSLGKLNYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELYGS 62
Query: 407 ACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459
+ P+ V +++ + + L VN Y + +++E+ ++A T ++
Sbjct: 63 GVDKLRMEHHTFTNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRI-VIQELIKSMASTAQL 121
Query: 460 SNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ ++V++E D Q+ ++ M+ Y +C+LIL E II + ++ C
Sbjct: 122 DSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLP 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P T EI+E+L AR+E + A +IA +++NLR+A++ E + + P
Sbjct: 182 IRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLYAEVARWQHSPML 241
Query: 574 DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ + L W+ L E A+ ILA+ SPK+++ VR ++ +LL + P +I+
Sbjct: 242 PDQSVQLPDWQAFLCETASAILAEQSPKKILEVRNRLYELLCHCIPPNVIM 292
>gi|226469848|emb|CAX70205.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 357
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 157/291 (53%), Gaps = 15/291 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK+ P+SL H+ +A+ LK+L+ + PH+L+ G SG+GKR M +L E+YG
Sbjct: 3 LWVDKYTPTSLGKLDYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELYGS 62
Query: 407 ACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459
+ P+ V +++ + + L VN Y + +++E+ ++A T ++
Sbjct: 63 GVDKLRMEHHTFTNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRI-VIQELIKSMASTAQL 121
Query: 460 SNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ ++V++E D Q+ ++ M+ Y +C+LIL E II + ++ C
Sbjct: 122 DSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLP 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P T EI+E+L AR+E + A +IA +++NLR+A++ E + + P
Sbjct: 182 IRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLYAEVARWQHSPML 241
Query: 574 DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ + L W+ L E A+ ILA+ SPK+++ VR ++ +LL + P +I+
Sbjct: 242 PDQSVQLPDWQAFLSETASAILAEQSPKKILEVRNRLYELLCHCIPPNVIM 292
>gi|289741699|gb|ADD19597.1| replication factor C subunit RFC3 [Glossina morsitans morsitans]
Length = 356
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 154/292 (52%), Gaps = 17/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P L+ H+++A+ L+ L G+ PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKHRPRELSRLDYHKNQAENLRNLCQQGDFPHLMFYGPSGAGKKTRIMCLLRELYGA 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVEL-----NVNLQANA-------KYALMGLVKEIRDNLA 454
E+ +++ SS + + N +L+ N + ++ L+K++
Sbjct: 63 GV--ERLRNEIMTFTTSSNRKISIMTIGSNYHLEVNPSDAGIYDRVVIIDLIKQVAQVHQ 120
Query: 455 ITP--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
I P + +IV+ EVD+ + Q+ ++ M+ Y +C++IL II ++++ C
Sbjct: 121 IDPNGQREFKIIVLSEVDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
I+V P EI +L I++KE L A ++ K+++NLR AI+ LE CK YPF
Sbjct: 181 GIRVAAPRPDEIATILQHISKKEGVVLPSELAKRVVQKSERNLRLAILMLETCKVQQYPF 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q I L W+ L E A +I+ + +P +L +R ++ +LLA+ V P +I
Sbjct: 241 TVQQEIVGLDWKTYLRETANQIITEQTPAKLEKIRDRLYELLAQGVPPDVIF 292
>gi|242011379|ref|XP_002426428.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510533|gb|EEB13690.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 355
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++PS+L+ H +A+ LK L+ G+ PH+L+ G GSGK+ M LL E+YG
Sbjct: 3 LWCEKYRPSNLSKLDYHLDQAKQLKNLINKGDFPHLLVYGTPGSGKKTRIMCLLKELYGP 62
Query: 407 ACW-------NEKWPT--QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
W N P+ ++ + SS +H+E+N ++ + + LVK+ +
Sbjct: 63 GAWKLKTCQMNFTTPSNKKIDIMTLSSNYHIEVNPSDVGIYDRVVITELVKKTASTYQLN 122
Query: 456 -TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + S ++++ +D+ Q+ ++ M+ Y +C+LILC +II ++K+ C I
Sbjct: 123 SSKQKSFKILLLQGIDELTADAQHALRKTMENYNVTCRLILCGNSISNIIPAIKSRCLHI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
++ P +I ++L+ I +KE L T A IA K+ +NLR+AI+ EAC+ +P +
Sbjct: 183 RIPAPSYEDICKILLFICKKEGIQLPETLAYNIARKSDRNLRRAILMCEACRVQQFPLTE 242
Query: 575 DQP-IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q + L W+ L E A I+A +P+ L RG+I +L+ + P +I
Sbjct: 243 NQEVVDLDWQIFLKETARLIVAKQTPEALYEARGRIYELIVHKIPPSVIF 292
>gi|350424978|ref|XP_003493974.1| PREDICTED: replication factor C subunit 3-like [Bombus impatiens]
Length = 355
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 152/290 (52%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+ L H+ +A+ LK ++ G+ PH+L+ G SG+GK+ M ++ E+YG
Sbjct: 3 LWVDKYRPTVLGKLDYHKEQAEYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIRELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ T + SS +H+E+N ++ + + +M LVK I
Sbjct: 63 GVDRLRMETMTFETPSKKKLEITTISSNYHIEVNPSDVGIHDRIVVMDLVKTTAQTHQID 122
Query: 457 P--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P + ++++ VD+ + Q+ ++ M+ Y +C+LILC ++ ++++ C I
Sbjct: 123 PSGQKEFKVVLLTNVDQLTKEAQHALRRTMEKYVTTCRLILCANSTSRVLPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I ++L I ++E L A ++A + +NLR+AI+ LEACK YPF
Sbjct: 183 RVPAPSISDIKDILHSICKREGLTLPDELATRLAECSGRNLRRAILMLEACKVEQYPFTA 242
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ I W+ + A ++++ +PK+L+ +R ++ +LL + LI
Sbjct: 243 DQSITEPDWQVYIRNTANMMVSEQNPKKLLTIRNRLYELLTHAIPCDLIF 292
>gi|380021906|ref|XP_003694797.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 3-like
[Apis florea]
Length = 355
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 150/290 (51%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H+ +A LK ++ G+ PH+L+ G SG+GK+ M ++ E+YG
Sbjct: 3 LWVDKYRPTTLGKLDYHKEQANYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ T + SS +H+E+N ++ + +M LVK I
Sbjct: 63 GTERLRMETMTFETPSKKKIEISTISSNYHIEVNPSDVGIYDRIVVMDLVKTTAQTHQID 122
Query: 457 P--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P + ++++ VD+ + Q+ ++ M+ Y +C+LILC ++ ++++ C I
Sbjct: 123 PNGQKEFKVVLLTNVDQLTKDAQHALRRTMEKYVATCRLILCANSTSRVLPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P I ++L I ++E L A ++A + +NLR+AI+ LEACK YPF
Sbjct: 183 RVPAPSIKNIKDILHTICKREGLTLPDELATRLAETSGRNLRRAILMLEACKVEQYPFTG 242
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ I W+ + A ++++ SPK+L+ +R ++ +LL + LI
Sbjct: 243 DQNITEPDWQVYIRNTANMMVSEQSPKKLLAIRDRLYELLTHAIPCDLIF 292
>gi|328772230|gb|EGF82269.1| hypothetical protein BATDEDRAFT_16167 [Batrachochytrium
dendrobatidis JAM81]
Length = 353
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 158/295 (53%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL+ H ++LL +L PH+L+ G SG+GK+ A L +++G
Sbjct: 3 LWVDKYRPLSLDKLSYHPDTSKLLCQLANSDEFPHLLVYGPSGAGKKTRVTATLRQLFGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K T+ + + SS +HVE+ ++ + + L+KE+ L
Sbjct: 63 GVEKLKIETRQFETPSNRKLEINIVSSNYHVEITPSDVGIYDRIIVQELIKEVAQTQQLD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++V+ E D + Q ++ M+ Y + ++ILCC II +++ C +I
Sbjct: 123 SSAKKQFKVVVLNEADSLSRDAQAGLRRTMEKYMGNMRMILCCNVTSKIISPIRSRCLLI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI VL +A++E+F LS FA +IAT+++ NLRKA++ LEA KA YPF +
Sbjct: 183 RVAAPSFTEIQTVLQNVAKEENFKLSSEFAQRIATESEGNLRKALLVLEAAKAQQYPFTN 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+Q +P WE+ + ++A IL + K L+ +R K+ +LL+ + +IL + +
Sbjct: 243 NQVLPKTDWEQHIHQIAHLILNQQNSKALIEIRTKLYQLLSNCIPADVILKTLAF 297
>gi|66523693|ref|XP_624376.1| PREDICTED: replication factor C subunit 3 [Apis mellifera]
Length = 355
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 150/290 (51%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H+ +A LK ++ G+ PH+L+ G SG+GK+ M ++ E+YG
Sbjct: 3 LWVDKYRPTTLGKLDYHKEQANYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ T + SS +H+E+N ++ + +M LVK I
Sbjct: 63 GTERLRMETMTFETPSKKKLEISTISSNYHIEVNPSDVGIYDRVVVMDLVKTTAQTHQID 122
Query: 457 P--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P + ++++ VD+ + Q+ ++ M+ Y +C+LILC ++ ++++ C I
Sbjct: 123 PNGQKEFKVVLLTNVDQLTKDAQHALRRTMEKYVATCRLILCANSTSRVLPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P I ++L I ++E L A ++A + +NLR+AI+ LEACK YPF
Sbjct: 183 RVPAPSIKNIKDILHTICKREGLTLPDELATRLAETSGRNLRRAILMLEACKVEQYPFTA 242
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ I W+ + A ++++ SPK+L+ +R ++ +LL + LI
Sbjct: 243 DQNITEPDWQVYIRNTANMMVSEQSPKKLLAIRDRLYELLTHAIPCDLIF 292
>gi|326914292|ref|XP_003203460.1| PREDICTED: replication factor C subunit 3-like [Meleagris
gallopavo]
Length = 344
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 142/260 (54%), Gaps = 13/260 (5%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ---------VLVPVASSAHH 427
G+ PH+L+ G SG+GK+ M LL E+YG + Q + + +S +H
Sbjct: 21 GDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQSITAPSKKKIEISTIASNYH 80
Query: 428 VELN-VNLQANAKYALMGLVKEI--RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIM 484
+E+N + N + + L+K + L + + ++++ EVDK + Q+ ++ M
Sbjct: 81 LEVNPSDAGNNDRVVIQELLKTVAQSQQLETSTQRDFKVVLLTEVDKLTKDAQHALRRTM 140
Query: 485 DGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFA 544
+ Y +C+LILCC II +++ C ++V P +I VL + +KE L A
Sbjct: 141 EKYMATCRLILCCNSISKIIGPIQSRCLTVRVPAPSIEDICHVLSSVCKKEGLTLPQELA 200
Query: 545 AKIATKAKQNLRKAIMALEACKALNYPFADDQPIP-LGWEEVLIELAAEILADPSPKRLV 603
++A K+ +NLRKA++ E+C+ YPF+ DQ IP + WE L E A I++ +P+RL+
Sbjct: 201 QRLAEKSGRNLRKALLMCESCRVQQYPFSADQDIPEMDWEIYLRETANAIVSQQTPQRLL 260
Query: 604 MVRGKIQKLLAEFVHPKLIL 623
VRG++ +LL + P++I+
Sbjct: 261 EVRGRLYELLTHCIPPEIIM 280
>gi|397643532|gb|EJK75924.1| hypothetical protein THAOC_02338 [Thalassiosira oceanica]
Length = 376
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 155/317 (48%), Gaps = 42/317 (13%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
+ DKH+PS L+ H Q L L D G PH+L+ G SG+GK+ MALL E++G
Sbjct: 2 LFVDKHRPSRLSQLNYHDTLTQRLTSLAADPGGLPHLLLYGPSGAGKKTRVMALLREVFG 61
Query: 406 DACWNEKW---------PT--QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
C E+ PT QV + + S +H+E+ + N +Y + ++KE+ N
Sbjct: 62 --CGAERLRLEKRTFTTPTKRQVEINMIQSNYHIEMAPGDAGLNDRYVIQDVIKEMAANK 119
Query: 454 AITPEV---------------------SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCK 492
I V S ++V+ EVDK Q ++ M+ Y+ SC+
Sbjct: 120 NIASVVTSKDGNDGEDDGHAKKKAAKASYKVVVLVEVDKLTRQAQAALRRTMEKYSSSCR 179
Query: 493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK 552
LILCC + +I+ V++ C I+V P EI VL ++RKE+ L+ A IA +
Sbjct: 180 LILCCNNPSKVIDPVRSRCLGIRVAAPSDDEIASVLKTVSRKENIKLADELAINIARLSS 239
Query: 553 QNLRKAIMALEACKALN-----YPFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVR 606
+NLR+A++ LE+C D P+P WE + LA I+ + SPK L+ R
Sbjct: 240 RNLRRALLMLESCYVTTRDESPRELKADTPVPRTDWERYIAMLATGIVKEQSPKSLMAAR 299
Query: 607 GKIQKLLAEFVHPKLIL 623
K+ +LL + ++IL
Sbjct: 300 EKLYELLINCIPAQIIL 316
>gi|312381002|gb|EFR26856.1| hypothetical protein AND_06782 [Anopheles darlingi]
Length = 378
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 158/312 (50%), Gaps = 37/312 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P L H+ +A L L G+ PH++ G SG+GK+ + LL E+YG
Sbjct: 3 LWVDRYRPRELAKLDYHKTQANQLINLCSQGDFPHLMFYGPSGAGKKTRIICLLRELYGP 62
Query: 407 ACWNEKWPTQVL-----------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLA 454
E+ +V+ + SS +H+E+N ++ + + ++K+I
Sbjct: 63 GV--ERLRNEVMHFTTPSNKKIEIMTVSSNYHIEVNPSDVGIYDRVVITDMIKQIAQTQQ 120
Query: 455 ITP--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
I P + IV+ EVD+ + Q+ ++ M+ Y +C+L+LC II +VK+ C
Sbjct: 121 IDPTGQRDFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRIIPAVKSRCL 180
Query: 513 VIKVDPPVTHEIMEVL--------------------IQIARKEDFDLSMTFAAKIATKAK 552
I+V P EI+ ++ I +KE + A +IA K++
Sbjct: 181 GIRVSSPTEEEIIGIMNVSKGVSSIHCSFADECLSPQTICKKEGLHIPPELAQRIAKKSE 240
Query: 553 QNLRKAIMALEACKALNYPFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQK 611
+NLR+AI++LEACK YPF +Q +P + W+ L E A I+ + +P+R+ +VR ++ +
Sbjct: 241 RNLRRAILSLEACKVQQYPFTANQDVPDMDWQVYLRETANMIVQEQTPQRMEVVRERLYE 300
Query: 612 LLAEFVHPKLIL 623
LL++ + P +I
Sbjct: 301 LLSQGIPPDIIF 312
>gi|28317156|gb|AAD46852.2|AF160912_1 LD06837p, partial [Drosophila melanogaster]
Length = 395
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 42 LWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 101
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T +V V SS +H+E+N + + ++ L+K++ +
Sbjct: 102 GVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 161
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I+ + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 162 ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGI 221
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L ++E L + A ++ K+++NLR+A++ LEA K PF
Sbjct: 222 RVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTA 281
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q IP L W+ L E A++I+++ +P +L +R ++ +LL + V P LI
Sbjct: 282 NQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIF 331
>gi|19921136|ref|NP_609494.1| replication factor C 38kD subunit [Drosophila melanogaster]
gi|22946236|gb|AAF53076.2| replication factor C 38kD subunit [Drosophila melanogaster]
gi|220942726|gb|ACL83906.1| RfC38-PA [synthetic construct]
gi|220952880|gb|ACL88983.1| RfC38-PA [synthetic construct]
Length = 356
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T +V V SS +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I+ + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 123 ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L ++E L + A ++ K+++NLR+A++ LEA K PF
Sbjct: 183 RVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q IP L W+ L E A++I+++ +P +L +R ++ +LL + V P LI
Sbjct: 243 NQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIF 292
>gi|147811404|emb|CAN63339.1| hypothetical protein VITISV_006668 [Vitis vinifera]
Length = 494
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 148/294 (50%), Gaps = 33/294 (11%)
Query: 332 TSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSG 391
T I K V +K + WAD++QP +L FICHR +A +L+ LV G H + +G G G
Sbjct: 154 TMMIFKEKVGQKFK--WADRYQPRTLTDFICHRDKAHMLRCLVRSGQSDHFIFEGAPGVG 211
Query: 392 KRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD 451
KR +A ALL E++G + +Q ++ HV
Sbjct: 212 KRTMARALLGEVFG----THRLESQCDNTSSNRGIHV----------------------- 244
Query: 452 NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
L P S+ I++ +K +E Q LI+ + Y K+ C +++ +K+ C
Sbjct: 245 -LFFNP--SSHAIILCGAEKLSEGDQLLIRDHLQTYRGHFKVYFC-YSGTSMLQHLKSLC 300
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
VI++ P EI+EVL IA+ E +L A +A KAK ++R+AI + EA LNYP
Sbjct: 301 TVIQIPTPSKEEIVEVLEFIAKHEAIELPPRLAENMAEKAKHSVRQAIRSFEATWKLNYP 360
Query: 572 FADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLV 625
F +DQ GWEE E+A +++A+ S K+ ++ KI+ L+A V ++I V
Sbjct: 361 FKEDQEPITGWEEEFAEIAKKVIAEQSAKQWYNIKEKIKNLIAHNVPSEIIFQV 414
>gi|195340081|ref|XP_002036645.1| GM11127 [Drosophila sechellia]
gi|194130525|gb|EDW52568.1| GM11127 [Drosophila sechellia]
Length = 351
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 154/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDFHKDQAANLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T +V V SS +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I+ + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 123 ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L ++E L + A ++ K+++NLR+A++ LEA K PF
Sbjct: 183 RVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q IP L W+ L E A++I+++ +P +L +R ++ +LL + V P LI
Sbjct: 243 NQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIF 292
>gi|195472100|ref|XP_002088340.1| GE12972 [Drosophila yakuba]
gi|194174441|gb|EDW88052.1| GE12972 [Drosophila yakuba]
Length = 356
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T +V V SS +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I+ + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 123 ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L ++E L + A ++ K+++NLR+A++ LEA K PF
Sbjct: 183 RVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q IP L W+ L E A++I+++ +P +L +R ++ +LL + V P LI
Sbjct: 243 NQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLIQGVPPNLIF 292
>gi|383854644|ref|XP_003702830.1| PREDICTED: replication factor C subunit 3-like [Megachile
rotundata]
Length = 355
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 151/290 (52%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H+ +A+ L+ +V G+ PH+L+ G SG+GK+ + +L E+YG+
Sbjct: 3 LWVDKYRPTTLGKLDYHQEQAEYLRNMVKKGDFPHLLVYGPSGAGKKTRILCILKELYGN 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ + + SS +H+E+N ++ + +M LVK I
Sbjct: 63 GVEKLRMESMAFETPSKKKLEITTISSNYHIEVNPSDVGIYDRVVVMDLVKTTAQTHQID 122
Query: 457 P--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P + ++++ VD+ + Q+ ++ M+ Y +C++ILC ++ ++K+ C I
Sbjct: 123 PSGQREFKVVLLTNVDQLTKDAQHALRRTMEKYVATCRIILCANSTSRVLPAIKSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I +L I ++E L ++A + +NLR+AI+ LEAC+ YPF
Sbjct: 183 RVPAPSISDIKSILHSICKREGLTLPNELGIRVAEASGRNLRRAILMLEACRVEQYPFTA 242
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ I W+ + A ++++ SPK+L+ +R ++ +LL + LI
Sbjct: 243 DQNIAEPDWQVYIRNTANMMVSEQSPKKLLEIRNRLYELLTHAIPCDLIF 292
>gi|194861801|ref|XP_001969859.1| GG10322 [Drosophila erecta]
gi|190661726|gb|EDV58918.1| GG10322 [Drosophila erecta]
Length = 356
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDFHKEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T +V V SS +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I+ + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 123 ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L ++E L + A ++ K+++NLR+A++ LEA K PF
Sbjct: 183 RVAAPNETEIVSILQNTCKREGLALPVELAKRLVDKSERNLRRALLMLEAAKVAKAPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q IP L W+ L E A++I+++ +P +L +R ++ +LL + V P LI
Sbjct: 243 NQEIPDLDWQVFLRETASQIISEQTPVKLEKIRERLYELLIQGVPPNLIF 292
>gi|125986059|ref|XP_001356793.1| GA19473 [Drosophila pseudoobscura pseudoobscura]
gi|195148330|ref|XP_002015127.1| GL18586 [Drosophila persimilis]
gi|54645119|gb|EAL33859.1| GA19473 [Drosophila pseudoobscura pseudoobscura]
gi|194107080|gb|EDW29123.1| GL18586 [Drosophila persimilis]
Length = 356
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 155/298 (52%), Gaps = 15/298 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELTKLDFHKEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGA 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T +V V SS +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 123 INGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIMSVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ +L ++E L + A ++ K+++NLR+A++ LEA K PF
Sbjct: 183 RVAAPSEAEMTAILQSTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKSPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL--LVMHYI 629
Q +P L W+ L E A++I+++ +P +L +R ++ +LL + V P LI LV H +
Sbjct: 243 QQEVPDLDWQVFLRETASQIISEQTPAKLEKIRDRLYELLTQGVPPNLIFRGLVEHLV 300
>gi|195434074|ref|XP_002065028.1| GK15241 [Drosophila willistoni]
gi|194161113|gb|EDW76014.1| GK15241 [Drosophila willistoni]
Length = 356
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 153/290 (52%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDYHQEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T ++ V SS +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRNETMTFTTPSNRKIEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I + +IV+ E D+ + Q+ ++ M+ Y +C++IL II ++++ C I
Sbjct: 123 INGQREFRVIVVSEADELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L ++E L + A ++ K+++NLR+A++ LEA K PF
Sbjct: 183 RVAAPSETEIINILQSTCKREGLVLPVELAKRVVDKSERNLRRALLMLEASKVAKSPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q I L W+ L E A +I+++ +P +L +R ++ +LL++ V P LI
Sbjct: 243 NQEIAELDWQVYLRETANQIMSEQTPAKLEKIRERLYELLSQGVPPNLIF 292
>gi|339256702|ref|XP_003370227.1| replication factor C subunit 3 [Trichinella spiralis]
gi|316965626|gb|EFV50315.1| replication factor C subunit 3 [Trichinella spiralis]
Length = 355
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 151/295 (51%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P L+ H+ + LK LV G+ PH+L G SG+GK+ L E+YG
Sbjct: 3 LWVDKHRPKQLSQLSYHKSLSVRLKYLVAQGDFPHLLFYGPSGAGKKTRIWCTLRELYGA 62
Query: 407 ACWNEKWP---------TQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ +V + + SS +H++LN ++ + + ++K + +
Sbjct: 63 GVEKIRLEHKSIETPSGKKVEIALVSSNYHIQLNPSDVAIYDRVVIQDVIKHMAQTQQLE 122
Query: 457 PEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
A +IV+ EVDK Q+ ++ M+ Y+ SC++ILCC+ +I+ +++ C I
Sbjct: 123 SRTQRAFKVIVLTEVDKLTREAQHALRRTMEKYSSSCRIILCCQSTSKVIQPIQSRCLPI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI E+L ++ + E+ LS +I KA NLR+A+++ E+ + +
Sbjct: 183 RVPAPTDEEITEILQRVLKLENCRLSAELIQEIVQKADGNLRRALLSAESVISNERNYLS 242
Query: 575 DQP-IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+ P I WE + E A+ IL + +PK L+ VRG++ +L+ + LI +++
Sbjct: 243 ENPVIEPDWEICMKETASMILREQTPKMLLQVRGRLYELIVHCIPASLIFKSLYF 297
>gi|194761254|ref|XP_001962844.1| GF14225 [Drosophila ananassae]
gi|190616541|gb|EDV32065.1| GF14225 [Drosophila ananassae]
Length = 356
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 153/290 (52%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A+ L+ L + PH++ G SGSGK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGSGKKTRIMCLLREMYGS 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T ++ V SS +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRSETMTFTTPSNRKIEVMTVSSNYHLEVNPSDAGIYDRTVVVDLIKQVAQTHQIE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I+ + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 123 ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI+ +L ++E L A ++ K+++NLR+A++ LEA K PF
Sbjct: 183 RVSAPSEPEIVSILQNTCKREGLTLPPELAKRLVEKSERNLRRALLMLEAAKVAKVPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+Q IP L W+ L + A++I+++ +P +L +R ++ +LL + V LI
Sbjct: 243 NQEIPDLDWQAFLRDTASQIISEQTPAKLEKIRERLYELLIQGVPSNLIF 292
>gi|167533047|ref|XP_001748204.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773324|gb|EDQ86965.1| predicted protein [Monosiga brevicollis MX1]
Length = 355
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 146/296 (49%), Gaps = 24/296 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P SL+ H + +Q LK L G+ PH+L G SG+GK+ MA L E+YG
Sbjct: 4 MWVDKHRPKSLDQLDFHANLSQHLKMLSASGDVPHMLFHGPSGAGKKTRCMAFLRELYGP 63
Query: 407 ACWNEKWPTQVLVPV---------ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ K QV+ P SS H+E+N + Y +V+ I +A TP
Sbjct: 64 SADRLKIDHQVIKPTPSKTVEISTLSSNFHIEINPSDVGIDDY---HVVRMILKEIARTP 120
Query: 458 EVSNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + +VI E D+ Q ++ IM+ Y +C+ IL C I+ +++ C
Sbjct: 121 LVDTSKHPFKTVVIVEADRLTRKSQQALRRIMESYVSNCRYILICNSSTKILAPIRSRCL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK----AL 568
++V P E+ VL +A+KE + +I ++++NLR+A++ LEA + A
Sbjct: 181 QMRVGAPTMSEMCAVLHGVAKKEAVTVPDELCQQIVKESRRNLRRALLMLEASRAQIQAT 240
Query: 569 NYPFADDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ P D PI WE L E A I+ + S RL+ VRG+ +LL + LIL
Sbjct: 241 SLPV--DLPIVRADWEVYLRETAERIVTEQSAARLLEVRGRFYELLTHCIPADLIL 294
>gi|340724560|ref|XP_003400649.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 3-like
[Bombus terrestris]
Length = 351
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 150/290 (51%), Gaps = 17/290 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H+++ + K G+ PH+L+ G SG+GK+ M ++ E+YG
Sbjct: 3 LWVDKYRPTALGKLDYHKNKQTIXKH----GDFPHLLVYGPSGAGKKTRIMCIIRELYGS 58
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ T + SS +H+E+N ++ + + +M LVK I
Sbjct: 59 GVDRLRMETMTFETPSKKKLEITTISSNYHIEVNPSDVGIHDRVVVMDLVKTTAQTHQID 118
Query: 457 P--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P + ++++ VD+ + Q+ ++ M+ Y +C+LILC ++ ++++ C I
Sbjct: 119 PSGQKEFKVVLLTNVDQLTKEAQHALRRTMEKYVTTCRLILCANSTSRVLPAIRSRCLGI 178
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I ++L I ++E L A ++A + +NLR+AI+ LEACK YPF
Sbjct: 179 RVPAPSISDIKDILHSICKREGLTLPDELATRLAECSGRNLRRAILMLEACKVEQYPFTA 238
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ I W+ + A ++++ +PK+L+ +R ++ +LL + LI
Sbjct: 239 DQSITEPDWQVYIRNTANMMVSEQNPKKLLTIRNRLYELLTHAIPCDLIF 288
>gi|195118724|ref|XP_002003886.1| GI18150 [Drosophila mojavensis]
gi|193914461|gb|EDW13328.1| GI18150 [Drosophila mojavensis]
Length = 356
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 150/290 (51%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGA 62
Query: 406 ------DACWNEKWPTQVLVPVASSAHHVELNVNLQANAKY---ALMGLVKEIRDN--LA 454
+ N P+ + + + + L VN Y ++ L+K++ +
Sbjct: 63 GVERLRNETMNFTTPSNRKIDIMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQID 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + +IVI E D+ + Q+ ++ M+ Y +C++IL II ++++ C I
Sbjct: 123 VNGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E++ VL ++E L A ++ K+++N+R+A++ LEA K YPF
Sbjct: 183 RVPAPSEAEMIAVLQNTCKREGLVLPPELAKRVVEKSERNMRRALLMLEASKVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q I L W+ L E AA+I+++ +P +L +R ++ +LL++ V P LI
Sbjct: 243 QQQIAELDWQVYLRETAAQIVSEQTPAKLEKIRDRLYELLSQGVPPNLIF 292
>gi|71666770|ref|XP_820341.1| replication factor C, subunit 5 [Trypanosoma cruzi strain CL
Brener]
gi|70885681|gb|EAN98490.1| replication factor C, subunit 5, putative [Trypanosoma cruzi]
gi|407849659|gb|EKG04335.1| replication factor C, subunit 5, putative [Trypanosoma cruzi]
Length = 349
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 158/295 (53%), Gaps = 19/295 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL + ++LK L + PH+L+ G SG+GK+ AMA+LH +YG
Sbjct: 2 LWVDKYRPKSLVEVELYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMAVLHHVYGP 61
Query: 407 ACWN---EKWPTQV----LVPVA--SSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ ++ E QV +V +A SS HH+++N + N + +M +++EI +++
Sbjct: 62 SVYSLRLEHRSVQVTDSKVVDIATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQTVSLQ 121
Query: 457 PEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
SN ++++ EVDK Q+ ++ M+ Y +C+L+L C +I +++ C
Sbjct: 122 SSTSNGVKYKVVLLNEVDKMGRAAQHALRRTMEKYMSTCRLVLICNSTSRLIAPLRSRCL 181
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V + +V+ + +E+ L S F A + +++ NLR+A++ +EA
Sbjct: 182 AVRVPSHSKENLTKVIRGVCERENRPLPSPEFMATVTQRSEGNLRRALLMVEAAAMTKVD 241
Query: 572 FAD---DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F+ D P P W L E+A +IL++ +PK+L +RGK LL + V +LIL
Sbjct: 242 FSGNGADIPQP-DWRVFLDEIANDILSEQTPKKLHEIRGKFYNLLGQCVSGELIL 295
>gi|195384848|ref|XP_002051124.1| GJ14536 [Drosophila virilis]
gi|194147581|gb|EDW63279.1| GJ14536 [Drosophila virilis]
Length = 356
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 151/290 (52%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGA 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T ++ V S +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRNETMSFTTPSNRKIEVMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQID 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I + +IVI E D+ + Q+ ++ M+ Y +C++IL II ++++ C I
Sbjct: 123 INGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +E+ VL ++E L A ++ K+++N+R+A++ LEA K YPF
Sbjct: 183 RVPAPSENEMTAVLQSTCKREGLVLPPELAKRVVEKSERNMRRALLMLEASKVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q I L W+ L E A +I+++ +P +L +R ++ +LL++ V P LI
Sbjct: 243 QQQIAELDWQVYLRETATQIVSEQTPAKLEKIRDRLYELLSQGVPPNLIF 292
>gi|195030434|ref|XP_001988073.1| GH10966 [Drosophila grimshawi]
gi|193904073|gb|EDW02940.1| GH10966 [Drosophila grimshawi]
Length = 356
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 148/290 (51%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGA 62
Query: 406 ------DACWNEKWPTQVLVPVASSAHHVELNVNLQANAKY---ALMGLVKEI--RDNLA 454
+ N P+ + V + + L VN Y ++ L+K++ +
Sbjct: 63 GVERLRNETMNFTTPSNRKIEVMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTQQID 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I + +IVI E D+ + Q+ ++ M+ Y +C++IL II ++++ C I
Sbjct: 123 INGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P ++ VL ++E L A ++ K+++N+R+A++ LEA K YPF
Sbjct: 183 RVPAPSESDMAAVLQNTCKREGLVLPPELAKRVVDKSERNMRRALLMLEASKVQQYPFTA 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q I L W+ L E A +I+++ +P +L +R ++ +LL++ V P LI
Sbjct: 243 QQEIVELDWQVYLRETATQIVSEQTPAKLEKIRDRLYELLSQGVPPNLIF 292
>gi|170584076|ref|XP_001896847.1| Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit)
[Brugia malayi]
gi|158595810|gb|EDP34309.1| Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit),
putative [Brugia malayi]
Length = 354
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 148/297 (49%), Gaps = 25/297 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H +A L E+V G+ PH+LI G SG+GK +L E+YG
Sbjct: 3 LWIDKYRPRELSALTYHVKQANDLIEIVKAGDFPHLLIYGPSGAGKMTRIFCILRELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN---VNLQANAKYALMGLVKEIRDNLA 454
+ + + SS +HV+L+ V + +V+EI +A
Sbjct: 63 GVEKLRMDARSFQAPSGKKLEIQTFSSNYHVQLSPGEVGIYDRI------VVQEIVKQMA 116
Query: 455 ITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
T ++ A ++V+ E D+ Q ++ M+ Y +C+LILCC+ II+ +K
Sbjct: 117 QTHQIVTATQRNFKVVVLVEADQLTRDAQNALRRTMEKYAQTCRLILCCDSISKIIDPLK 176
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C ++V P ++ + + + ++E+ + + A + KA N+R+A++ +EA K
Sbjct: 177 SRCLAVRVAAPSDDDVAKAVRHVCKQENVSVPESIIAAVLQKANGNMRRALLMIEAAKVQ 236
Query: 569 NYPFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
NYPF ++Q IP WE L E A ++ +P+ L+ VR + + + + P +I +
Sbjct: 237 NYPFKENQEIPDPEWEIYLRETAKMMIQQQNPENLLKVRNRFYECIGHCIPPNVIFM 293
>gi|452821368|gb|EME28399.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 401
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 154/308 (50%), Gaps = 33/308 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L H + L L G PH+L G SG GKR ALL +++G
Sbjct: 30 LWVDKYRPKTLETLDIHPEWTEKLASLCEQGTLPHLLFYGPSGVGKRTRIYALLRQVFGI 89
Query: 407 ACWNEKW----------PTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
A + P +V + +SAHH+EL ++ N + + +VKEI + I
Sbjct: 90 AIEKRQVEHRFLKVGEPPKEVELTTITSAHHIELCPADVGYNDRLVIQEIVKEIASSKPI 149
Query: 456 TPEVSNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
E+ N ++V++++D+ ++ Q ++ M+ YT C++I+ E ++E +++
Sbjct: 150 --ELGNVHRGYKVVVLHDIDEVSKQAQQALRRTMEKYTSCCRIIMSAESVTRVMEPIRSR 207
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C I++ P EI +VL +IA+KE L +A ++ T++K NLRKAI+ L+ +A+ Y
Sbjct: 208 CLGIRIPCPKKEEIEQVLQKIAKKEGLVLPDCYANQLVTQSKGNLRKAILLLQVGRAIAY 267
Query: 571 PFA---------------DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
PF+ Q WE + ++A ++ + +PK+L +R K+ +L
Sbjct: 268 PFSQQQQKKNEEEEESWISSQETGWDWERLCYDIANIVIREQNPKQLCNIRNKLYELFCH 327
Query: 616 FVHPKLIL 623
+ +I
Sbjct: 328 AIPGDMIF 335
>gi|407404710|gb|EKF30062.1| replication factor C, subunit 5, putative [Trypanosoma cruzi
marinkellei]
Length = 349
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 158/295 (53%), Gaps = 19/295 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL+ + ++LK L + PH+L+ G SG+GK+ AM++L +YG
Sbjct: 2 LWVDKYRPKSLDEVELYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMSVLRHVYGP 61
Query: 407 ACWN---EKWPTQV----LVPVA--SSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ ++ E QV +V +A SS HH+++N + N + +M +++EI +++
Sbjct: 62 SVYSLRLEHRSVQVTDSKVVDIATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQTVSLQ 121
Query: 457 PEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
SN ++++ EVDK Q+ ++ M+ Y +C+L+L C +I +++ C
Sbjct: 122 SSTSNGVKYKVVLLNEVDKMGRAAQHALRRTMEKYMSTCRLVLICNSTSRLIAPLRSRCL 181
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V + +V+ ++ E+ L S F A + +++ NLR+A++ +EA
Sbjct: 182 AVRVPSHSKENLTKVIRRVCELENRPLPSPAFMATVTQRSEGNLRRALLMVEAAAMTKVD 241
Query: 572 FAD---DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F+ D P P W L E+A +IL++ +PK+L +RGK LL + V +LIL
Sbjct: 242 FSGNGADIPQP-DWRVFLDEIANDILSEQTPKKLHEIRGKFYNLLGQCVSGELIL 295
>gi|402593824|gb|EJW87751.1| hypothetical protein WUBG_01340 [Wuchereria bancrofti]
Length = 354
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 149/297 (50%), Gaps = 25/297 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H +A+ L E+V G+ PH+LI G +G+GK +L E+YG
Sbjct: 3 LWVDKYRPRELSALTYHVKQARDLIEIVKAGDFPHLLIYGPNGAGKMTRIFCVLRELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN---VNLQANAKYALMGLVKEIRDNLA 454
+ T+ + SS +H++L+ V + +V+EI +A
Sbjct: 63 GVEKLRMDTRSFQAPSGKKLEIQTFSSNYHIQLSPGEVGIYDRV------VVQEIVKQMA 116
Query: 455 ITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
++++A + V+ E D+ Q ++ M+ Y +C+LILCC+ II+ +K
Sbjct: 117 QMHQIASATQRNFKVAVLMEADQLTRDAQNALRRTMEKYAQTCRLILCCDSISKIIDPLK 176
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C ++V P ++ + + + ++E+ + + A + KA N+R+A++ +EA
Sbjct: 177 SRCLAVRVAAPSDDDVAKAVRHVCKQENVSVPESIIAAVVQKANGNMRRALLMIEAATVQ 236
Query: 569 NYPFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
NYPF ++Q IP WE L E A ++ SP+ L+ VR + + + + P +I +
Sbjct: 237 NYPFKENQEIPDPEWEVYLRETAKMMMQQQSPENLLKVRNRFYECIGHCIPPNIIFM 293
>gi|209882811|ref|XP_002142841.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209558447|gb|EEA08492.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 350
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 150/295 (50%), Gaps = 18/295 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGN--CPHILIKGQSGSGKRALAMALLHEIY 404
W DK+QP LN +CH+ LL+++ N PH++ G SGSGK+A A+LHE++
Sbjct: 2 LWVDKYQPHRLNELLCHKQLNCLLEKIANGSNKTIPHLIFYGPSGSGKKARISAMLHEVF 61
Query: 405 GDACWNEKWPTQVLVP--------VASSAHHVE-----LNVNLQANAKYALMGLVKEIRD 451
GD+ +K ++ P V S+HH++ L + +Y + L ++
Sbjct: 62 GDSV--DKVKADIIKPEGINSDFVVCQSSHHMQISAPDLGTKDRVVTQYLIKQLSSQVGA 119
Query: 452 NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
N + + VI E D + Q ++ M+ Y + ++IL CE II +++ C
Sbjct: 120 NTFFKKGPNYRVFVILESDVLSMEAQAGLRRTMEKYAANSRVILHCEQLSSIISPLRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
I+V P +EI+ VL IA+ E ++S + I T ++ NLR+AI+ LE N+
Sbjct: 180 LCIRVPLPSHNEIVHVLSHIAKSEGLNVSNEYLIDITTASEGNLRRAILLLETAAVQNFS 239
Query: 572 FADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
+ + L W+ V ++AA ++ +P PK L+ +R + LL+ + ++L+ +
Sbjct: 240 LSPSN-MKLPWQRVCNDIAANVIKNPHPKTLLDIREPMYDLLSSCIPADIVLVTL 293
>gi|440465127|gb|ELQ34467.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
gi|440488575|gb|ELQ68292.1| replication factor C subunit 3 [Magnaporthe oryzae P131]
Length = 425
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 150/297 (50%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PH+LI G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V ++VI E D + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQGARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI VL A+KE + +S +IA ++ +NLR+A++ LE A N
Sbjct: 181 LVRVAAPSEDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D+ PI P WE ++ ++A EI+ + +P R++ VR K+ LL + P IL + +
Sbjct: 241 EDNTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTF 297
>gi|193659798|ref|XP_001951302.1| PREDICTED: replication factor C subunit 3-like [Acyrthosiphon
pisum]
Length = 355
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 149/283 (52%), Gaps = 17/283 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WADK++P+SL H+ +AQ L LV G+ PH+L G +G+GK+ +ALL ++YG
Sbjct: 3 LWADKYRPNSLQKVDYHQDQAQHLTNLVNQGDFPHLLFYGPNGAGKKTRILALLRQLYGP 62
Query: 407 ACWNEKWPTQVL-----------VPVASSAHHVELNV-NLQANAKYALMGLVKEIRDN-- 452
E+ T+ + + +S +H+E+N + + +M L+K +
Sbjct: 63 GV--ERLRTEHMNFMTPSNKKFEIMTVASNYHIEVNASDAGMYDRIVVMELIKTVAQTHQ 120
Query: 453 LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
L T + +I++ EVD+ + Q ++ M+ Y +C++ILC +I ++++ C
Sbjct: 121 LDSTKQRHFKVILLTEVDRLTKEAQQALRRTMEKYMATCRIILCANSIGQVIPAIRSRCL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
++V P +I ++L I +KE L A I+ ++NLR+AI+ LEA K YPF
Sbjct: 181 AVRVPAPTHEDICKILKTICKKEGLTLPDELALIISQNCERNLRRAILMLEASKVKQYPF 240
Query: 573 ADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLA 614
Q + + W+ + + A +IL+ +P +L+ VR + +L+
Sbjct: 241 DVKQSVVVPDWQLYIGDTAKQILSQQTPGKLLEVRSMLYELIV 283
>gi|390594649|gb|EIN04059.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 356
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 148/296 (50%), Gaps = 25/296 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H + LK L G+ PH+L G SG+GK+ A L ++YG
Sbjct: 3 LWVDKYRPKALDNLHYHEGLSARLKSLASSGDFPHMLFYGPSGAGKKTRISATLRQLYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + V S H+E+ + N + ++E+ +A T
Sbjct: 63 GAEKLKIDQRVFMTPSRRRLDLNVVQSNFHIEITPSEVGNYDRVV---IQELLKEIAQTQ 119
Query: 458 EVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V NA ++VI E D + Q ++ M+ Y + ++ILC +I +K+ C
Sbjct: 120 QVDLNARQRFKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA---- 567
+++V P E+M VL +A+ E FDL AA+IA A NLRKA++ LEA K
Sbjct: 180 LLVRVGAPSEEEMMRVLAHVAKGEGFDLPPDAAAEIARDANGNLRKALLVLEALKMQSPD 239
Query: 568 LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
L+ P + +P WE ++A I+ + SP+R++ VR K +LL+ + P +IL
Sbjct: 240 LSGPLSIAKP---DWETYCHKVADMIVQEQSPQRVMDVRAKFYELLSHCIPPTVIL 292
>gi|296412902|ref|XP_002836158.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629965|emb|CAZ80349.1| unnamed protein product [Tuber melanosporum]
Length = 351
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 151/295 (51%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P L H+ + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 2 LLVDKHRPRKLEALHYHQGLSSRLKALANSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 61
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K ++V + + +S +H+E+ + N + + L+KEI +
Sbjct: 62 GVEKIKIDSRVFMTTTNRKIEFNIVASVYHIEITPSDVGNHDRVIIQSLLKEIGQTQQVD 121
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I + ++VI E D Q ++ M+ Y+ + +LIL +II +K+ +I
Sbjct: 122 IAAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILIANSTANIIAPIKSRTLLI 181
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E++ VL +A E F+ S A ++A ++ +NLR+A++ EA A N D
Sbjct: 182 RVAAPTIDEMVGVLKHVAELERFEFSDKLARRVAEESGRNLRRALLMFEALYAQNEVVKD 241
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+ PI P +E ++ ++A E+LAD SP R+++VR K LL + +IL ++ +
Sbjct: 242 NTPIPPPDYETLIGQIADELLADHSPARILLVRAKFYDLLTHCIPATVILKLLTF 296
>gi|307203721|gb|EFN82681.1| Replication factor C subunit 3 [Harpegnathos saltator]
Length = 354
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 148/289 (51%), Gaps = 12/289 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H +A+ LK +V + PH+L+ G G+GK+ + +L E+YG+
Sbjct: 3 LWVDKYRPTTLAKLDYHLEQAEDLKNMVQKRDFPHLLVHGPPGAGKKTRILCILKELYGN 62
Query: 407 ACW-----NEKWPT----QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
A N ++ T ++ + SS +H+E+N + + + +M L+K I
Sbjct: 63 AAERLKTENMQFETASKKKLEILTISSNYHIEVNPSDAGIHDRIVVMELIKATAQTHHID 122
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ ++++ VD+ Q+ ++ M+ Y +C+LILC ++ ++++ C I+
Sbjct: 123 IGQTEFKVVLLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRCVRIR 182
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P EI +L I R+E L A +I + +NLR+AI+ LEA K YPF +
Sbjct: 183 VPAPTASEIKNILHSICRREGLSLPDELANRIIEASDRNLRRAILMLEASKVEQYPFTTN 242
Query: 576 QPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q I W+ + A +++++ SPK L+ +R + LL + LI
Sbjct: 243 QKITEPDWQVYIRNTATKMISEQSPKVLLEIRNRFYDLLTRAIPCDLIF 291
>gi|345564932|gb|EGX47888.1| hypothetical protein AOL_s00081g215 [Arthrobotrys oligospora ATCC
24927]
Length = 352
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 153/294 (52%), Gaps = 22/294 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ DKH+P +L+ H + LK L +G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 2 LFVDKHRPKTLDSLTYHHDLSSRLKALA-NGDFPHLLVYGPSGAGKKTRIIATLKELYGP 60
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K +++ + +S +H+E+ + N + + L+KE+ A T
Sbjct: 61 GVEKIKIDSRIFTTTSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEV----AQT 116
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V A ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 117 QQVDLAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSR 176
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
+++V P T EI++VL + + E ++ +IA ++ +NLR+A++ EA A N
Sbjct: 177 TLLVRVAAPTTDEIVDVLKGVGKMERLEVKDGLCKRIAVESGRNLRRALLMFEAVYAQNE 236
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D+ P+ P WE ++ ++A EI+A+ SP R++ VR K+ LL + P +IL
Sbjct: 237 VVKDNTPLPPPDWEALISQIADEIMAEHSPARILQVRAKLYDLLTHCIPPTVIL 290
>gi|322794004|gb|EFZ17242.1| hypothetical protein SINV_07523 [Solenopsis invicta]
Length = 353
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 12/289 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L H +A+ LK +V + PH+LI G SG+GK+ +L E+YG
Sbjct: 3 LWVDKYRPKTLANLDYHLEQAEDLKNMVQKRDFPHLLIHGPSGAGKKTRISCILRELYGV 62
Query: 407 ACW-----NEKWPT----QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
A N ++ T ++ + SS +H E+N + + +M L+K I
Sbjct: 63 AAERLKTENMQFETPSKKKLEILTNSSNYHTEVNPSDAGIYDRIVVMELIKATAQTHHID 122
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ ++++ VD+ + Q+ ++ M+ Y +C+LILC ++ ++++ C I+
Sbjct: 123 ISQKEFKVVLLSNVDQLTKDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRCVRIR 182
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P EI +L I ++E L A ++ + +NLR+AI+ LEACK YPF D
Sbjct: 183 VPAPTASEIKSILHSICKREGLTLPDELANRLIEASDRNLRRAILMLEACKVEQYPFTVD 242
Query: 576 QPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q I W+ + A+ ++++ SPK L+ VR + LL + LI
Sbjct: 243 QKISQPDWQVFIRNTASMMVSEQSPKVLLDVRNRFYDLLTRAIPCDLIF 291
>gi|388851451|emb|CCF54853.1| probable RFC5-DNA replication factor C, 40 KD subunit [Ustilago
hordei]
Length = 353
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 147/293 (50%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ DK++P +L+ H+ ++ L L + PHIL+ G SG+GK+ LL E+YG
Sbjct: 2 LFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHILMYGPSGAGKKTRIACLLRELYGP 61
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ K +V V + SS +H+EL + N + + ++KEI N+
Sbjct: 62 GTYKLKIDQRVFVTPSNRKIDVNIVSSNYHIELTPSDAGNYDRLVIQDILKEIAQTQNVD 121
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D + Q ++ M+ Y + +L+LC II +++ C ++
Sbjct: 122 LNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSRCLLL 181
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA----LNY 570
+V P EI VL +A+KE F + T +I NLRKAI+ LEA + L+
Sbjct: 182 RVGAPSDEEIKTVLSHVAKKERFSIPDTVQNQICDDCSGNLRKAILVLEALRMQSPDLSA 241
Query: 571 PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
A +P WE + + A IL+DPSP+ L+ VR K+ +LL + P LIL
Sbjct: 242 GIAIAKP---DWEIYISKTADLILSDPSPQNLLAVRSKLYELLVHAIPPTLIL 291
>gi|389638296|ref|XP_003716781.1| replication factor C subunit 5 [Magnaporthe oryzae 70-15]
gi|351642600|gb|EHA50462.1| replication factor C subunit 5 [Magnaporthe oryzae 70-15]
Length = 352
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 150/297 (50%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PH+LI G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V ++VI E D + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQGARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI VL A+KE + +S +IA ++ +NLR+A++ LE A N
Sbjct: 181 LVRVAAPSEDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D+ PI P WE ++ ++A EI+ + +P R++ VR K+ LL + P IL + +
Sbjct: 241 EDNTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTF 297
>gi|452847021|gb|EME48953.1| hypothetical protein DOTSEDRAFT_142483 [Dothistroma septosporum
NZE10]
Length = 356
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 150/299 (50%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P ++ H ++ L+ L G+ PH+L+ G SG+GK+ A L ++YG
Sbjct: 3 LLVDKHRPRTIETLTYHPELSERLRALANSGDFPHLLVYGPSGAGKKTRITATLRQLYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K ++V + SS +H+E+ + N + + L+KE+ A T
Sbjct: 63 GVEKIKIDSRVFQTTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEV----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V A ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 119 QQVDLAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C +++V P EI EVL ++ + E + K+A +K+NLR+A++ EA A N
Sbjct: 179 CLLVRVAAPSEEEICEVLAKVGKDERYQSCEPLEKKVAKDSKRNLRRALLMFEAVHAQNE 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
++ PI P WE ++ E+A EI+A+ SP R++ R K+ LL+ + +IL + +
Sbjct: 239 NVSEKTPIPPPDWEALIDEIAKEIIAERSPARIMQARAKLYDLLSHCIPATMILKTLTF 297
>gi|71747956|ref|XP_823033.1| replication factor C subunit 5 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832701|gb|EAN78205.1| replication factor C, subunit 5, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261332892|emb|CBH15887.1| ATPase, putative [Trypanosoma brucei gambiense DAL972]
Length = 349
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 156/294 (53%), Gaps = 17/294 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + ++LK L + PH+L+ G SG+GK+ AMA+L ++YG
Sbjct: 2 LWVDKYRPRTLDDVDLYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMAVLQQVYGP 61
Query: 407 ACWN---EKWPTQV----LVPVA--SSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAI- 455
+ ++ E QV +V +A SS HH+++N + N + +M +++EI + +
Sbjct: 62 SVYSLRLEHKSVQVTDSKVVDIATLSSPHHIDINPSDAGNHDRVVVMQMIREIAQTVPLQ 121
Query: 456 --TPEVSN-AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
TP + ++V+ EVDK Q+ ++ M+ Y +C+L+L C +I +++ C
Sbjct: 122 SGTPGAAKYKVVVLNEVDKMGRAAQHALRRTMEKYMATCRLVLICNSTSRLIAPLRSRCL 181
Query: 513 VIKVDPPVTHEIMEVLIQIARKED-FDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V I +V+ + KE S F A ++ +++ NLR+A + LEA
Sbjct: 182 AVRVPSHSQENITKVIRTVCEKEGRMPPSPAFLAALSNQSEGNLRRAQLMLEAAAMTKVD 241
Query: 572 FADDQP-IPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F+ IP W+ L E+A +IL + +PK+L +RGK LL + + ++I+
Sbjct: 242 FSGSGANIPQADWQVFLEEIANDILTEQTPKKLFEIRGKFYDLLGQCISGEVIM 295
>gi|343426782|emb|CBQ70310.1| probable RFC5-DNA replication factor C, 40 KD subunit [Sporisorium
reilianum SRZ2]
Length = 353
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ DK++P +L+ H+ ++ L L + PHIL+ G SG+GK+ LL E+YG
Sbjct: 2 LFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHILMYGPSGAGKKTRIACLLRELYGP 61
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ K +V V + SS +H+EL + N + + ++KEI N+
Sbjct: 62 GTYKLKIDQRVFVTPSNRKIDVNIVSSNYHIELTPSDAGNYDRLVIQDILKEIAQTQNVD 121
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D + Q ++ M+ Y + +L+LC II +++ C ++
Sbjct: 122 LNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSRCLLL 181
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA----LNY 570
+V P EI VL +A+KE F + T +I NLRKA++ LEA + L+
Sbjct: 182 RVGAPTDDEIKTVLTLVAKKERFSIPDTIQTQICDDCNGNLRKAMLVLEALRMQSPDLSG 241
Query: 571 PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+P WE + + A IL+DPSP L+ VR K+ +LL + P LIL
Sbjct: 242 GIGIAKP---DWEIYIAKTADLILSDPSPHNLLAVRSKLYELLVHAIPPTLIL 291
>gi|322705234|gb|EFY96821.1| activator 1 38 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 352
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHPELSHRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K ++V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDSRVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D+ + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADQLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI VL A+KE + + +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEEICSVLAMSAKKEGWGVVKGLHQRIAVESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
++D PI P WE ++ ++A EI+ + +P R++ VR K LL + P IL
Sbjct: 241 SEDTPIPPADWEALIGQIAKEIMDEHTPARILQVRAKFYDLLTHCIPPTTIL 292
>gi|406859749|gb|EKD12812.1| clamp-loader complex subunit E [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 369
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 154/316 (48%), Gaps = 38/316 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELV-----------------VDGNCPHILIKGQSG 389
DKH+P SL+ H + L+ LV G+ PH+L+ G SG
Sbjct: 3 LLVDKHRPRSLDQLTYHPELSDRLRSLVRPSSHSSRFFLLTTSQAQSGDFPHLLVYGPSG 62
Query: 390 SGKRALAMALLHEIYGDACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-K 439
+GK+ +A L E+YG K +V + SS +H+E+ + N +
Sbjct: 63 AGKKTRIVATLKELYGPGVEKIKIDCRVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDR 122
Query: 440 YALMGLVKEIRDNLAITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL 493
+ L+KE+ A T +V + ++VI E D Q ++ M+ Y+ + +L
Sbjct: 123 VVVQDLLKEV----AQTQQVDTSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRL 178
Query: 494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553
IL +II +++ +++V P EI VL + ARKE + +S +IA ++ +
Sbjct: 179 ILLANSTANIIAPIRSRTLLVRVAAPSEREICGVLEKSARKEGWSVSAGLNERIARESGR 238
Query: 554 NLRKAIMALEACKALNYPFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKL 612
NLR+A++ LEA A N D+ PI P WE ++ ++A+EI+A+ SP R++ VR K+ L
Sbjct: 239 NLRRALLMLEAVHAQNEKITDNTPIPPPDWEALISQVASEIVAEHSPARILQVRAKLYDL 298
Query: 613 LAEFVHPKLILLVMHY 628
L + P IL + +
Sbjct: 299 LTHCIPPTTILKTLTF 314
>gi|85110603|ref|XP_963541.1| activator 1 38 kDa subunit [Neurospora crassa OR74A]
gi|30913260|sp|Q8X082.1|RFC5_NEUCR RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5; AltName: Full=Probable activator 1 subunit 5
gi|18376021|emb|CAB91755.2| probable replication factor C 38K chain [Neurospora crassa]
gi|28925224|gb|EAA34305.1| activator 1 38 kDa subunit [Neurospora crassa OR74A]
Length = 352
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 147/288 (51%), Gaps = 13/288 (4%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLAIT 456
K +V + +S +H+E+ + N + + L+KE+ + ++
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDLS 124
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ ++VI E D Q ++ M+ Y+ + +LIL +II +++ C +++V
Sbjct: 125 AKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRV 184
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
P EI +VL A+KE + + +IA ++ +NLR+A++ EA A N D
Sbjct: 185 AAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDST 244
Query: 577 PI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PI P WE ++ ++A EI+ + +P R++ VR K+ LL + +IL
Sbjct: 245 PIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIIL 292
>gi|340057395|emb|CCC51740.1| putative ATPase [Trypanosoma vivax Y486]
Length = 349
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 149/295 (50%), Gaps = 19/295 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL + +L+ L + PH+L G SG+GK+ MA+L +YG
Sbjct: 2 LWVDKYRPKSLVDVELYPELTSMLRRLAESQDLPHLLFYGPSGTGKKTRCMAVLEHVYGP 61
Query: 407 ACWN---EKWPTQV----LVPVA--SSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ ++ E QV +V +A SS HH+++N + N + +M +++E + +
Sbjct: 62 SVYSLRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRVVVMQMIRETAQTVPLH 121
Query: 457 PEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
SN ++V+ EVDK Q+ ++ M+ Y +C+LIL C +I +++ C
Sbjct: 122 TTTSNGVKYKVVVLNEVDKMGRAAQHALRRTMEKYVATCRLILICNSTSRLIAPLRSRCL 181
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V I +V+ + KE + S F A + ++ NLR+A + LEA A
Sbjct: 182 AVRVPSHSQENITKVIQTVCEKEGRPMPSPAFLATVTQRSDGNLRRAQLILEAAAATKVE 241
Query: 572 FAD---DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F+ D P P W L E+A +IL + +PK+L VRGK LL + V ++IL
Sbjct: 242 FSGSGADIPQP-DWCVFLTEIAHDILTEQTPKKLHDVRGKFYDLLGQCVSGEVIL 295
>gi|358386824|gb|EHK24419.1| hypothetical protein TRIVIDRAFT_178042 [Trichoderma virens Gv29-8]
Length = 352
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL H ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLEALSYHHELSERLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ ++ + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL Q A+KE++++ +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHAEICDVLAQSAKKENWEVVKGLHQRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + P IL
Sbjct: 241 TDSTPIPPADWEALVGQIAKEIIEEHTPARILQVRAKLYDLLTHCIPPTTIL 292
>gi|336468523|gb|EGO56686.1| hypothetical protein NEUTE1DRAFT_65455, partial [Neurospora
tetrasperma FGSC 2508]
gi|350289215|gb|EGZ70440.1| putative replication factor C 38K chain, partial [Neurospora
tetrasperma FGSC 2509]
Length = 353
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 147/288 (51%), Gaps = 13/288 (4%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLAIT 456
K +V + +S +H+E+ + N + + L+KE+ + ++
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDLS 124
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ ++VI E D Q ++ M+ Y+ + +LIL +II +++ C +++V
Sbjct: 125 AKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRV 184
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
P EI +VL A+KE + + +IA ++ +NLR+A++ EA A N D
Sbjct: 185 AAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDST 244
Query: 577 PI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PI P WE ++ ++A EI+ + +P R++ VR K+ LL + +IL
Sbjct: 245 PIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIIL 292
>gi|324520157|gb|ADY47571.1| Replication factor C subunit 3, partial [Ascaris suum]
Length = 354
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 157/306 (51%), Gaps = 30/306 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H + L ++ G+ PH+LI G SG+GK+ +L E+YG
Sbjct: 3 LWVDKYRPHQLSELSYHTEQGNHLASIIKAGDFPHLLIYGPSGAGKKTRIHCILRELYGS 62
Query: 407 ACW-------NEKWPT--QVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLA 454
N + P+ ++ + SS +H++L +V + +V+EI +A
Sbjct: 63 GVERMSVSMKNFEAPSGKKLEIQTVSSNYHIQLSPGDVGIYDRV------VVQEIIKQMA 116
Query: 455 ITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
T ++ A ++V+ EV++ Q+ ++ M+ Y+ +C+LILCCE +I+ ++
Sbjct: 117 QTQQIDTATQKQFKVVVLMEVEQLTRDAQHALRRTMEKYSATCRLILCCESIAKVIDPLR 176
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C I+V P H+ +EV+ + + E+ + T A + KA N+R+ ++ +EA KA
Sbjct: 177 SRCMAIRVAAPSDHDAVEVVKVVCKAENVAIPDTAVASVVKKACGNMRRILLMVEAIKAQ 236
Query: 569 NYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL--- 624
+ ++Q +P WE L E A IL S + L+ VR +I + ++ + P +I +
Sbjct: 237 SCASEENQFLPEPDWEVYLKETARMILQQQSAENLLKVRSRIYECISRCIPPSIIFVNLL 296
Query: 625 --VMHY 628
++HY
Sbjct: 297 RELLHY 302
>gi|219112623|ref|XP_002178063.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410948|gb|EEC50877.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 361
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 150/300 (50%), Gaps = 23/300 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P L+ H +Q L L + + PH+ G +G+GK+ ALL +YG
Sbjct: 2 LWVDKYRPVKLDDLSYHDTISQRLSSLASNPESMPHLFFYGPAGAGKKTRITALLGSLYG 61
Query: 406 DACWNEKW-------PTQ--VLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
K PT+ V + + +S +H+E++ + N ++ + ++KE+ N +
Sbjct: 62 PGASRLKLDKRTFTTPTKRTVELNMITSNYHIEISPGDAGLNDRFVIQDVIKEMASNKNV 121
Query: 456 TPEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
+++ +V+ EVD+ + Q ++ M+ Y +C+LIL C + +IE
Sbjct: 122 GASATSSERKSGAATFKTVVLVEVDRLSRQAQAALRRTMEKYASTCRLILVCNNQSKVIE 181
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
V++ C I+V P EI +VL ++ E F L A IA ++ +N+R+AI+ LEAC
Sbjct: 182 PVRSRCLGIRVAAPTEDEICKVLKSVSINESFMLPDELAINIARESSRNVRRAILMLEAC 241
Query: 566 KALNY-PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQP+ WE + +LA EI + +P+RL+ R K+ +LL + +I+
Sbjct: 242 YVQKRGALTKDQPVQKTDWELYINQLAVEITREQTPQRLMAAREKLYELLVNCIPANVII 301
>gi|403356875|gb|EJY78044.1| Replication factor C subunit 3 [Oxytricha trifallax]
gi|403375729|gb|EJY87839.1| Replication factor C subunit 3 [Oxytricha trifallax]
Length = 371
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 148/297 (49%), Gaps = 17/297 (5%)
Query: 347 FWADKHQPSSLN-GFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W +K++P ++ H ++L +L + PHIL G SG+GKR L LL E+Y
Sbjct: 7 LWVEKYRPLCIDDAKAIHSDTYKMLSQLAQSDDFPHILFYGPSGAGKRTLTKCLLQELYK 66
Query: 406 DACWNE------------KWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEI--R 450
+ ++ T V V SS +H+E+ + N + + L+KE+
Sbjct: 67 NNSVHKIKSEHKEFKASATSSTVVECVVFSSNYHIEVTPSDADNQDRVIVQKLIKEVAGS 126
Query: 451 DNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
L + S ++VI+E+D Q ++ M+ Y C++I CE +I+ +++
Sbjct: 127 QQLDTKAQKSFKVVVIHELDNLTREAQAALRRTMETYMPYCRIIANCESLSKVIQPLRSR 186
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C ++V P EI+ VL QIAR E+FDL A I +++NLR+AIM L+ K N
Sbjct: 187 CLQVRVPAPNAQEIVGVLDQIARNENFDLPKQLAFSICNYSRRNLRRAIMMLQTAKLKNE 246
Query: 571 PFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
+D +P +E ++A ++ + SPK+L +R K+ +LL + + +I V+
Sbjct: 247 KLSDKTYVPGPEYETYTRDIAKMVVMEQSPKQLRAIRSKLYELLTKGITSDMIFQVL 303
>gi|225563283|gb|EEH11562.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 608
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 150/303 (49%), Gaps = 21/303 (6%)
Query: 339 VVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMA 398
+ IE+LRP SL+ H + LK L G+ PH+L+ G SG+GK+ +A
Sbjct: 259 IAIEQLRP--------RSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIA 310
Query: 399 LLHEIYGDACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKE 448
L E++G K ++ + SS +H+E+ + N + + L+KE
Sbjct: 311 TLKELFGPGVEKIKIDARIFQTTSNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELLKE 370
Query: 449 I--RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
+ + ++ + ++VI E D Q ++ M+ Y+ + +LIL +II
Sbjct: 371 VAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAP 430
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+++ +++V P EI +VL +KE + + +IA ++ +NLR+A++ LEA
Sbjct: 431 IRSRTLLVRVAAPAEAEICQVLKLAVKKEGWTEAPGLNKRIAKESGRNLRRALLMLEAIY 490
Query: 567 ALNYPFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLV 625
A N DD PI P WE ++ +A EI+AD SP R++ VR K+ LL + P IL
Sbjct: 491 AQNEKVTDDTPIPPPDWEALISLIADEIMADRSPGRILQVRAKLYDLLTHCIPPTTILRT 550
Query: 626 MHY 628
+ +
Sbjct: 551 LTF 553
>gi|440638755|gb|ELR08674.1| replication factor C subunit 5 [Geomyces destructans 20631-21]
Length = 352
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 151/299 (50%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P SL+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 3 LLVDKHRPRSLDTLSYHDDLSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K ++V + +S +H+E+ + N + + L+KE+ A T
Sbjct: 63 GVEKIKIDSRVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEV----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V + ++VI E D Q ++ M+ Y+ + +LIL + +II +++
Sbjct: 119 QQVDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLADSTANIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
+++V P EI +VL + KE + L+ ++A ++ +NLR+A++ EA A N
Sbjct: 179 TLLVRVAAPTEAEICDVLAKTGAKEGWPLAEELNLRVAQESGRNLRRALLMFEAVHAQNE 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ +A EI+A+ SP R++ VR K+ LL + P IL + +
Sbjct: 239 KVTDQTPIPPPDWEALISLIADEIMAEHSPARILQVRAKLYDLLTHCIPPTTILKTLTF 297
>gi|326429355|gb|EGD74925.1| replication factor C subunit 3 [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 151/297 (50%), Gaps = 25/297 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H Q LK L G+ PH+L G G+GK+ L E+YG
Sbjct: 3 LWIDKYRPKQLSALSYHDGITQQLKTLASSGDVPHLLFYGPPGAGKKTRVQCFLRELYGA 62
Query: 407 ACWNEKW--------PTQVL-VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ K P++ + + +S +H+E+N ++ + + + L+KEI A +
Sbjct: 63 STDKLKIEHRSFKATPSKTVDISTIASGYHIEINPSDVGIDDYHVVRLLLKEI----ASS 118
Query: 457 PEVSNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
P++ + ++VI E D+ Q ++ IM+ Y +C+ +L I+ +++ C
Sbjct: 119 PQLDTSHHAFKVVVISEADRLTRKAQQALRRIMEKYVHNCRYVLIGNSSSKILAPIRSRC 178
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN-- 569
++V P E+ VLI + +KE + FAAK+A + +NLR+A++ LEA + +
Sbjct: 179 LGLRVGAPSVDELSTVLIDVGKKEGCQVMPGFAAKVANASSRNLRRALLMLEATASQSRG 238
Query: 570 ---YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+D +P WE L E A I++ SP+RL+ VR ++ +LL+ + P +I+
Sbjct: 239 SKVMEATNDIQLP-DWEIFLRETAKRIISQQSPQRLLEVRQRLYELLSHCIPPDVII 294
>gi|171689292|ref|XP_001909586.1| hypothetical protein [Podospora anserina S mat+]
gi|170944608|emb|CAP70719.1| unnamed protein product [Podospora anserina S mat+]
Length = 352
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L+ L G+ PH+L G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHDELSDRLRSLAQSGDFPHLLFYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL E II +++ C
Sbjct: 121 VDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILVGESTAGIIAPIRSRCL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P E+ VL +E +++ ++A ++ +NLR+A++ LE A N
Sbjct: 181 LVRVARPTVGEVEGVLRGSCEREGWEVREGLVGRVARESGRNLRRALLMLEGVYAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
DD PI P WE ++ ++A EI+A+ + R++ VR K+ LL + P IL + +
Sbjct: 241 TDDTPIPPPDWEGLIEQIAQEIMAEHTSARILQVRSKLYDLLTHCIPPTTILKTLTF 297
>gi|358399724|gb|EHK49061.1| hypothetical protein TRIATDRAFT_133438 [Trichoderma atroviride IMI
206040]
Length = 352
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 151/297 (50%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL H+ + L+ L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 5 VDKHRPRSLEALSYHQELSDRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ ++ + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL Q A+KE++++ +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEEICDVLAQSAKKENWEVVKGLHERIAVESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + P IL + +
Sbjct: 241 TDTTPIPPADWEALIGQIAKEIIEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTF 297
>gi|453088544|gb|EMF16584.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 358
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 148/299 (49%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L H ++ L+ L G+ PH+LI G SG+GK+ A L +YG
Sbjct: 3 LLVDKHRPRTLETLSYHPELSERLRALANSGDFPHLLIYGPSGAGKKTRITATLRALYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K ++V + SS +H+E+ + N + + L+KE+ A T
Sbjct: 63 GVEKIKIDSRVFQTTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEV----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V A ++VI E D+ Q ++ M+ Y+ + +LIL +II +++
Sbjct: 119 QQVDLAAKQRFKVVVINEADQLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C +++V P EI EVL ++ + E + KIA ++K+NLR+A++ EA A N
Sbjct: 179 CLLVRVSAPTEAEICEVLAKVGKDERYTSCEPLEKKIAKESKRNLRRALLMFEAIHAQNE 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
++ PI P WE ++ +A EI+ + SP R++ VR K+ LL + IL + +
Sbjct: 239 QISEKTPIPPPDWEALIEVIAKEIIEERSPARILQVRAKLYDLLTHCIPATTILKTLTF 297
>gi|46105402|ref|XP_380505.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Gibberella zeae
PH-1]
Length = 354
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L +G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHDELSERLRSLAQNGDVPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI VL A+KE++ + +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEEICNVLAVSAKKENWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNDKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D PI P WE ++ ++A EI A+ +P R++ VR K+ LL + P IL
Sbjct: 241 TDSTPIPPADWEALIGQIAQEIYAEHTPARILEVRSKLYDLLTHCIPPTTIL 292
>gi|312066686|ref|XP_003136388.1| activator 1 38 kDa subunit [Loa loa]
gi|307768452|gb|EFO27686.1| activator 1 38 kDa subunit [Loa loa]
Length = 354
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 146/297 (49%), Gaps = 25/297 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H +A+ L E+V G+ PH+L+ G SG+GK +L E+YG
Sbjct: 3 LWVDKYRPRELSALTYHVKQARDLIEIVKTGDFPHLLLYGPSGAGKMTRIFCILRELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN---VNLQANAKYALMGLVKEIRDNLA 454
+ + + +S +HV+L+ V + +V+EI +A
Sbjct: 63 GVEKLRMDARSFQAPSGKKLEIQTFTSNYHVQLSPGEVGIYDRV------VVQEIIKQMA 116
Query: 455 ITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
++ A + V+ E D+ Q ++ M+ Y SC+LILCC+ II+ +K
Sbjct: 117 QMHQIDVATQRNFKVAVLMEADQLTRDAQNALRRTMEKYAQSCRLILCCDSISKIIDPLK 176
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C ++V P ++ + + + ++E+ + + + KA N+R+A++ +EA K
Sbjct: 177 SRCLAVRVAAPSDDDVAKAVRFVCKQENVSVPDSIVDAVVQKANGNMRRALLMIEAAKVQ 236
Query: 569 NYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
NYPF ++Q IP WE L E A ++ +P+ L+ +R + + + + P +I +
Sbjct: 237 NYPFKENQEIPDPEWEVYLRETAKMMIQQQNPENLLKIRNRFYECIGHCIPPNIIFM 293
>gi|358058719|dbj|GAA95682.1| hypothetical protein E5Q_02339 [Mixia osmundae IAM 14324]
Length = 387
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 28/302 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYG 405
+ DK++P LN H ++ ++ L G + PH+L G SG+GK+ M L E+YG
Sbjct: 29 LFVDKYRPKQLNDLHYHHDLSRRIQALAESGQDFPHLLFYGPSGAGKKTRIMCTLRELYG 88
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+ + +V V V S +H+EL ++ +V+EI +A T
Sbjct: 89 SSAEKLRIDQRVFVTPSRRKLDVNVVQSNYHIELT---PSDVGMYDRSVVQEILKEIAQT 145
Query: 457 PEVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V NA ++VI E D + Q ++ M+ YT + +LILC II +++
Sbjct: 146 QQVDVNAKKRFKVVVINEADLLSRDAQSALRRTMEKYTTNLRLILCANSTSKIIGPIRSR 205
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C +++V P E++ V+ +A+KE F++ + A +A A NLR+A++ALEA +
Sbjct: 206 CLLLRVGAPTDDEMVNVINHVAKKERFEIPRSAALAVAQSASGNLRRALLALEALHTQDP 265
Query: 571 PF--------ADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKL 621
F A + +P+ WEE ++ + IL +P++L+ VR + +LL + P+L
Sbjct: 266 TFQSASVAGKATSKIVPMPDWEEYCGKVTSTILTSQTPQQLLAVRQMLYELLVHCITPQL 325
Query: 622 IL 623
IL
Sbjct: 326 IL 327
>gi|307188807|gb|EFN73390.1| Replication factor C subunit 3 [Camponotus floridanus]
Length = 354
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 12/289 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H +A+ LK +V + PH+L+ G G+GK+ + +L E+YG
Sbjct: 3 LWVDKYRPTTLAKLDYHLEQAEDLKNMVQKRDFPHLLVHGPPGAGKKTRILCILRELYGS 62
Query: 407 A-----CWNEKWPT----QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
A N ++ T ++ + SS +H E+N + + + +M L+K I
Sbjct: 63 AAERLKVENMQFETASKKKLEILTISSNYHTEVNPSDAGIHDRIVVMELIKATAQTHHID 122
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ +I++ VD+ Q+ ++ M+ Y +C+LILC ++ ++++ C I+
Sbjct: 123 VGQKEFKVILLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRCVRIR 182
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P EI +L I ++E L FA ++ + +NLR+AI+ LEACK PF D
Sbjct: 183 VPAPTGSEIKNILHSICKREGLHLPDEFANRVIEASGRNLRRAILMLEACKVEQCPFTAD 242
Query: 576 QPIPLGWEEVLIELAAEIL-ADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q I +V I A ++ ++ SPK L+ VR + LL + LI
Sbjct: 243 QKITEPDYQVYIRNTANMMVSEQSPKVLLEVRNRFYDLLTRAIPCDLIF 291
>gi|340522517|gb|EGR52750.1| replication factor C, subunit 5-like protein [Trichoderma reesei
QM6a]
Length = 352
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 151/297 (50%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL H ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLEALSYHHELSERLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ ++ + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI + L Q A++E++++ +IA ++ +NLR+A++ LEA A N
Sbjct: 181 LVRVAAPTHAEICDALAQSAKRENWEVVQGLHQRIAEESGRNLRRALLMLEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + P I+ + +
Sbjct: 241 TDTTPIPPADWEALIGQIAKEIIEEHTPARILQVRAKLYDLLTHCIPPTTIIKTLTF 297
>gi|336260375|ref|XP_003344983.1| hypothetical protein SMAC_06760 [Sordaria macrospora k-hell]
gi|380095056|emb|CCC07558.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 352
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 144/282 (51%), Gaps = 21/282 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHPELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSNNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++ C
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL A+KE + + +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHQEICDVLASSAKKEGWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLL 613
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL
Sbjct: 241 TDTTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLL 282
>gi|346326608|gb|EGX96204.1| replication factor C subunit 5 [Cordyceps militaris CM01]
Length = 352
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 151/297 (50%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHDELTERLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K ++V + +S +H E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDSRVFQTSSNRKLEFNIVASVYHQEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P +I +VL A+KE++ + +IA ++ +NLRKA++ EA A N
Sbjct: 181 LVRVPAPSHEQICDVLASAAKKENWSVIKGLHQRIAVESGRNLRKALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P W+ ++ ++A EI+ + +P R++ VR K+ LL + P +IL + +
Sbjct: 241 TDSTPIPPADWDALIGQIAKEIMDEHTPARILQVRSKLYDLLTHCIPPTIILKTLTF 297
>gi|452989910|gb|EME89665.1| hypothetical protein MYCFIDRAFT_57005 [Pseudocercospora fijiensis
CIRAD86]
Length = 357
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 148/295 (50%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L+ H ++ L+ L G+ PH+LI G SG+GK+ A L +YG
Sbjct: 3 LLVDKHRPRTLDTLSYHPELSERLRALANSGDFPHLLIYGPSGAGKKTRITATLRALYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K ++V + SS +H+E+ + AN + + L+KE+ +
Sbjct: 63 GVEKIKIDSRVFQTTTNRKLEFNIVSSNYHLEITPSDVANYDRVVVQDLLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ C ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRCLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI EVL ++ + E + +IA ++K+NLR+A++ EA A N ++
Sbjct: 183 RVAAPTEEEICEVLAKVGKDERYTACQPLERRIAKESKRNLRRALLMFEAVHAQNENVSE 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
PI P WE ++ +A EI+ + SP R++ VR K+ LL + IL + +
Sbjct: 243 KTPIPPPDWEALIEVIAKEIVEERSPARILHVRAKLYDLLTHCIPATTILKTLTF 297
>gi|225684714|gb|EEH22998.1| replication factor C subunit 5 [Paracoccidioides brasiliensis Pb03]
Length = 352
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ HR + LK L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 3 LLVDRLRPRSLDALTYHRELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGT 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + SS +H+E+ + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARVFQTSTNRKLEFNIVSSVYHLEITPSDVGNYDRVV---VQELLKEVAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI E D Q ++ M+ Y+ + ++IL +II +++
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P EI +VL +KE++ + +IA ++ +NLR+A++ EA A N
Sbjct: 180 LLVRVAAPTEAEICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
DD PI P WE ++ +A EI+A+ SP R++ VR K+ LL + P IL + +
Sbjct: 240 VTDDTPIPPPDWEALISVIADEIMAERSPARILQVRAKLYDLLTHCIPPTTILKTLTF 297
>gi|388517395|gb|AFK46759.1| unknown [Lotus japonicus]
Length = 201
Score = 126 bits (317), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Query: 484 MDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF 543
M+ Y+ C+LILCC + E++++ C I+++ P +I+EV+ I +KE F
Sbjct: 1 MEKYSAYCRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQFPSGF 60
Query: 544 AAKIATKAKQNLRKAIMALEACKALNYPFADDQPI-PLGWEEVLIELAAEILADPSPKRL 602
AA+IA K+ +NLR+AI++ E C+ YPF + Q I P+ WEE + E+A++I+ + SPKRL
Sbjct: 61 AARIAEKSNRNLRRAILSFETCRVQQYPFTNRQTIPPMDWEEYISEIASDIMKEQSPKRL 120
Query: 603 VMVRGKIQKLLAEFVHPKLIL 623
VRGK+ +LL + P++IL
Sbjct: 121 FQVRGKLYELLINCIPPEMIL 141
>gi|332020714|gb|EGI61119.1| Replication factor C subunit 3 [Acromyrmex echinatior]
Length = 354
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 146/289 (50%), Gaps = 12/289 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++L H +A+ LK +V + PH+L+ G G+GK+ + +L E+YG
Sbjct: 3 LWVDKYRPTTLAKLDYHLEQAENLKNMVNKRDFPHLLVHGPPGAGKKTRILCILRELYGV 62
Query: 407 ACW-----NEKWPT----QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
A N ++ T ++ + SS +H E+N + + +M L+K I
Sbjct: 63 AAERLKIENLQFETPSKKKIEILTISSNYHTEVNPSDAGIYDRIVVMELIKATAQTHHID 122
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ ++++ VD+ Q+ ++ M+ Y +C+LILC ++ ++++ C I+
Sbjct: 123 IGQREFKVVLLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIQSRCVRIR 182
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P EI +L I ++E L A ++ + +NLR+AI+ LEACK YPF D
Sbjct: 183 VPAPTAPEIKNILHSICKREGLTLPDELANRMVEVSNRNLRRAILMLEACKVEQYPFTVD 242
Query: 576 QPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
Q + W+ + A+ ++++ SPK L+ +R + LL + LI
Sbjct: 243 QKVTEPDWQVYIRNTASMMVSEQSPKVLLEIRNRFYDLLTRSIPCDLIF 291
>gi|322695635|gb|EFY87440.1| activator 1 38 kDa subunit [Metarhizium acridum CQMa 102]
Length = 352
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 150/292 (51%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHPELSHRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K ++V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDSRVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D+ + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADQLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI VL A+KE +++ +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEEICSVLAVSAKKEGWEVVKGLHERIAVESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+++ PI P WE ++ ++A EI+ + +P R++ VR K LL + P IL
Sbjct: 241 SENTPIPPADWEALIGQIAKEIMDEHTPARILQVRAKFYDLLTHCIPPTTIL 292
>gi|400600329|gb|EJP68003.1| putative activator 1 subunit 5 [Beauveria bassiana ARSEF 2860]
Length = 352
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 149/297 (50%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHDELTDRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K ++V + +S +H E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDSRVFQTSSNRKLEFNIVASVYHQEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL A+KE++ + +IA ++ +NLRKA++ EA A N
Sbjct: 181 LVRVAAPSHEEICDVLAYAAKKENWSVVKGLHQRIAVESGRNLRKALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P W+ ++ ++A EI+ + +P R++ VR K+ LL + P IL + +
Sbjct: 241 TDSTPIPPADWDALIGQIAREIMDEHTPARILQVRSKLYDLLTHCIPPTTILKTLTF 297
>gi|342184431|emb|CCC93913.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 395
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 168/322 (52%), Gaps = 23/322 (7%)
Query: 320 SKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNC 379
S S P + E FI + +E + W DK++P +L+ + ++LK L +
Sbjct: 25 SSSLPTR--LSECRFIYLCLRLEVM--LWVDKYRPKTLDDVELYPELTEVLKRLAESQDL 80
Query: 380 PHILIKGQSGSGKRALAMALLHEIYGDACWN---EKWPTQV----LVPVA--SSAHHVEL 430
PH+L+ G SG+GK+ AMA+L ++YG ++ E QV +V +A SS HH+++
Sbjct: 81 PHLLLYGPSGTGKKTRAMAVLEKVYGPTVYSLRLEHKSVQVTDSKVVDIATLSSPHHIDI 140
Query: 431 NVNLQANA-KYALMGLVKEIRDNLAITPEVSNA----MIVIYEVDKAAEHIQYLIKWIMD 485
N + N + +M +++EI + + P ++V+ EVDK Q+ ++ M+
Sbjct: 141 NPSDAGNHDRVVVMQMIREIAQTVPLQPVAPKGAKYKVVVLNEVDKMGRAAQHALRRTME 200
Query: 486 GYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA--RKEDFDLSMTF 543
Y +C+LIL C +I +++ C I+V P + E +E +++ R+ S F
Sbjct: 201 KYMSTCRLILICSSTSRLIAPLRSRCLAIRV-PSHSRENLEKVVKAVCEREGRAPPSQAF 259
Query: 544 AAKIATKAKQNLRKAIMALEACKALNYPFA-DDQPIPLG-WEEVLIELAAEILADPSPKR 601
A + +++ NLR+A + LEA FA IP W+ L ++A++I+++ +P++
Sbjct: 260 LASLTRQSEGNLRRAQLMLEAAAMNKADFAGSGSDIPQADWQVFLEQIASDIISEQTPRK 319
Query: 602 LVMVRGKIQKLLAEFVHPKLIL 623
L +RGK +L + + ++IL
Sbjct: 320 LYEIRGKFYDMLGQCISGEVIL 341
>gi|429857955|gb|ELA32792.1| DNA replication factor c subunit [Colletotrichum gloeosporioides
Nara gc5]
Length = 352
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H+ + L L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHQELSDRLGSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI EVL A+KE++ + +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPSHEEICEVLAVSAKKENWPMVKGLHMRIAQESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + P IL
Sbjct: 241 TDSTPIPPPDWEALISQIAREIVEEHTPARILQVRAKLYDLLTHCIPPTTIL 292
>gi|408392830|gb|EKJ72144.1| hypothetical protein FPSE_07682 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 148/292 (50%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L +G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHDELSERLRSLAQNGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI VL A+KE++ + +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEEICNVLAVSAKKENWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D PI P WE ++ ++A +I A+ +P R++ VR K+ LL + P IL
Sbjct: 241 TDSTPIPPADWEALIGQIAQDIYAEHTPARILEVRSKLYDLLTHCIPPTTIL 292
>gi|393239720|gb|EJD47250.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 357
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 145/293 (49%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL+ H + LK L G+ PH+L G SG+GK+ +A L I+G
Sbjct: 3 LWVDKYRPRSLDELHYHADLSARLKSLAASGDFPHMLFYGPSGAGKKTRILATLRAIFGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V V V S H+EL + N + ++EI +A T
Sbjct: 63 GVEKVKIDQRVFVTPSKRKLDVNVVQSNFHIELTPSDVGNYDRVV---IQEILKEIAATQ 119
Query: 458 EVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ NA ++VI E D + Q ++ M+ Y + +L+LC ++I +K+ C
Sbjct: 120 QIDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRLVLCTNSTSNLIAPIKSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P E+ VL +A+KE FDL T + +I A NLRKA++ LEA K +
Sbjct: 180 LLVRVAAPNAEEMQAVLEHVAKKEKFDLPPTASEQIVADANGNLRKALLVLEALKMQSPD 239
Query: 572 FADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D I WE +A I+ +P+++++VR K+ +LL+ + P +++
Sbjct: 240 LTGDLAIAKPDWEAYCHAVADLIVQRQTPEQVMLVRAKMYELLSHCIPPTVVI 292
>gi|115383958|ref|XP_001208526.1| activator 1 38 kDa subunit [Aspergillus terreus NIH2624]
gi|114196218|gb|EAU37918.1| activator 1 38 kDa subunit [Aspergillus terreus NIH2624]
Length = 352
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 146/298 (48%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK +P SL+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKLRPRSLDALSYHHELSERLRSLAQSGDFPHLLMYGPSGAGKKTRTVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + SS +H+E+ + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVV---VQELLKEIAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V A ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDLAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P EI VL ++E + ++ +IA ++ +NLR+A++ EA A N
Sbjct: 180 LLVRVAAPTEDEICTVLSTAGQREGWTVAPGLNKRIAQESGRNLRRALLMFEAIYAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D+ PI P WE V+ +A EILA+ SP RL+ R ++ LL + P IL + +
Sbjct: 240 VTDNTPIPPPDWEVVIQMMAHEILAERSPARLLQCRARLYDLLTHCIPPTTILKTLTF 297
>gi|335748611|gb|AEH58814.1| replication factor C subunit 3 [Karenia brevis]
Length = 354
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 150/294 (51%), Gaps = 21/294 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P SL+ H + LK+L GN PH+L G SG+GK A+L E+YG
Sbjct: 4 LWVDKHRPKSLDEMDYHHDLSARLKKLAAQGNQPHMLFVGPSGAGKSTRVYAMLRELYGP 63
Query: 407 ACWNEKWPTQVLVP------------VASSAHHVELNVNLQANAKYAL-MGLVKEIRDNL 453
K T+ + P V S +H+ L + N A+ M L+KE+
Sbjct: 64 GTDMIKVETKSVAPNPSSPSNTVDIQVVVSNYHLVLTPSDVGNKDRAVVMQLIKEV---- 119
Query: 454 AITPEVSN---AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
A P + N ++VI + + Q ++ M+ Y +C++IL C+ II +++
Sbjct: 120 AAHPPLGNHTFKVVVIEDAGASNPQAQAPLRRTMEKYMKTCRIILMCDSASKIIAPLRSR 179
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C ++V P ++ +VL ++A E L FA K+A K+ ++LR+A++ LE+ A
Sbjct: 180 CCAVRVGAPSNEDVQKVLQKVASAESLQLPPAFAFKVAEKSGRDLRRALLLLESAHAQAN 239
Query: 571 PFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F+ D +P GW+ + +++ +IL + SPK + VRG + +LLA + P IL
Sbjct: 240 QFSKDGILPQEGWDGAIEKVSKKILQEQSPKCAMEVRGMLYELLAACLPPDFIL 293
>gi|308491749|ref|XP_003108065.1| CRE-RFC-3 protein [Caenorhabditis remanei]
gi|308248913|gb|EFO92865.1| CRE-RFC-3 protein [Caenorhabditis remanei]
Length = 370
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 151/301 (50%), Gaps = 28/301 (9%)
Query: 347 FWADKHQPSSL---NGFICHRHEAQLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHE 402
W DK++P L +G H +A LK L G+C PH+L G SG+GK+ LL E
Sbjct: 3 LWVDKYRPKELIGKDGVDFHLEQANHLKFL--SGDCMPHLLFCGPSGAGKKTRIKCLLRE 60
Query: 403 IYGDAC-------------WNEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKE 448
+YG N K Q + SS +HVE+ ++ + + LVKE
Sbjct: 61 LYGVGVDKTQLIMKPFTTPSNRKLEIQTV----SSNYHVEMTPSDVGIYDRVVVQDLVKE 116
Query: 449 IRDNLAI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
+ I + + S ++V+ E D Q+ ++ M+ Y ++CK+ILCCE IIE
Sbjct: 117 MAQTSQIEASSQKSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEP 176
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+++ C +I V P E+ VL+++ +KE ++ KI K++ NLR+AI+ EA K
Sbjct: 177 LQSRCIIINVPAPTDEEMTSVLMKVIQKEKLEMPQNILQKIVEKSEGNLRRAILMTEAIK 236
Query: 567 ALNY-PFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
N + + IP+ WE L E A IL + + L+ VR ++ ++L+ + P +IL
Sbjct: 237 MENENGISTNAQIPVPEWEIYLQETARLILQKQTSEVLLKVRERLYEVLSRLIPPNIILK 296
Query: 625 V 625
V
Sbjct: 297 V 297
>gi|71004802|ref|XP_757067.1| hypothetical protein UM00920.1 [Ustilago maydis 521]
gi|46096871|gb|EAK82104.1| hypothetical protein UM00920.1 [Ustilago maydis 521]
Length = 353
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 146/293 (49%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ DK++P +L+ H+ ++ L L + PH+L+ G SG+GK+ LL ++YG
Sbjct: 2 LFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHMLMYGPSGAGKKTRIACLLRQLYGP 61
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ K +V V + SS +H+EL + N + + ++KEI N+
Sbjct: 62 GTYKLKIDQRVFVTPSNRKIDVNIVSSNYHIELTPSDAGNYDRLVIQDILKEIAQTQNVD 121
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D + Q ++ M+ Y + +L+LC II +++ C ++
Sbjct: 122 LNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSRCLLL 181
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA----LNY 570
+V P EI VL +A+KE F++ +I NLRKA++ LEA + L+
Sbjct: 182 RVGAPTDEEIKTVLNHVAKKERFNIPDAVQTQICDDCNGNLRKAMLVLEALRMQSPDLSG 241
Query: 571 PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+P WE + + A IL+DPSP+ L+ VR K+ +LL + P LIL
Sbjct: 242 GIGIAKP---DWEIYITKTADLILSDPSPQNLLAVRSKLYELLVHAIPPTLIL 291
>gi|154281829|ref|XP_001541727.1| activator 1 38 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150411906|gb|EDN07294.1| activator 1 38 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 352
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 147/298 (49%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 3 LLVDRLRPRSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K ++ + SS +H+E+ + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARIFQTTSNRKLEFNIVSSIYHLEITPSDVGNYDRVV---VQELLKEVAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P EI +VL +KE + + +IA ++ +NLR+A++ LEA A N
Sbjct: 180 LLVRVAAPAEAEICQVLKLAVKKEGWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
DD PI P WE ++ +A EI+AD SP R++ VR K+ LL + P IL + +
Sbjct: 240 VTDDTPIPPPDWEALISLIADEIMADRSPGRILQVRAKLYDLLTHCIPPTTILRTLTF 297
>gi|295674217|ref|XP_002797654.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280304|gb|EEH35870.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 363
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ HR + LK L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 3 LLVDRLRPRNLDALTYHRGLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTSTNRKLEFNIVSSVYHLEITPSDVGNYDRVVIQELLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + ++IL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIISPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI +VL +KE++ + +IA ++ +NLR+A++ EA A N D
Sbjct: 183 RVAAPTEAEICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ +A EI+A+ SP R++ VR K+ LL + P IL + +
Sbjct: 243 DTPIPPPDWEALISVIADEIMAERSPARILQVRAKLYDLLTHCIPPTTILKTLTF 297
>gi|302926981|ref|XP_003054403.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735344|gb|EEU48690.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 352
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDSLTYHHELSSRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTTGNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL A+KE + + +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEEICDVLAVSAKKEGWPVVKGLHQRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D PI P WE ++ ++A EIL + +P R++ VR K+ LL + P IL
Sbjct: 241 TDSTPIPPADWEALIGQIAKEILEEHTPARILQVRSKLYDLLTHCIPPTTIL 292
>gi|50549265|ref|XP_502103.1| YALI0C21692p [Yarrowia lipolytica]
gi|49647970|emb|CAG82423.1| YALI0C21692p [Yarrowia lipolytica CLIB122]
Length = 348
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 155/304 (50%), Gaps = 28/304 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P SL+ H+ ++ L G+ PH+L+ G SG+GK+ M LL ++YG
Sbjct: 3 LWVDKHRPKSLDHVDYHQDISERFSALAATGDLPHLLVYGPSGAGKKTRVMGLLKKLYGP 62
Query: 407 ACWNEKWPT-----------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN-- 452
+ EK T ++ + V SA+H+E+ ++ N + + L+KE +
Sbjct: 63 SV--EKISTKSHKFVTPSKRELELGVICSAYHLEVTPSDMGNNDRLVIQQLLKETAETQQ 120
Query: 453 LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
+ + + +++I E D + Q ++ M+ YT + +LIL +II +++
Sbjct: 121 VDLNAKQRFKVVIINEADSLSRDAQAALRRTMEKYTKNIRLILLTNSTSNIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P +I+ VL ++A KE DL T KIA+ + +NLRKA++ LE Y
Sbjct: 181 LVRVAAPTEQDIVNVLEKVAAKEHVDLENTKTLEKIASHSDRNLRKALLTLETL----YT 236
Query: 572 FA------DDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
FA ++ PIP WE V+ +A E+++ +P L+ +R +LL+ + P IL
Sbjct: 237 FAGSKTVSENTPIPTPDWEMVIGRIARELVSSRTPATLLAIRSLFYELLSHCIPPSTILK 296
Query: 625 VMHY 628
+ Y
Sbjct: 297 ELTY 300
>gi|432094499|gb|ELK26061.1| Replication factor C subunit 3 [Myotis davidii]
Length = 425
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 112/195 (57%), Gaps = 11/195 (5%)
Query: 440 YALMGLV-KEIRDNLAITPEVSNA---------MIVIYEVDKAAEHIQYLIKWIMDGYTD 489
++L G V K+I+ + + +VS+ M+++ EVDK Q+ ++ M+ Y
Sbjct: 167 HSLCGFVRKDIQKCMNLVHQVSSKYYKGYNEFYMVLLTEVDKLTRDAQHALRRTMEKYMS 226
Query: 490 SCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIAT 549
+C+LILCC +I +++ C I+V P +I VL + +KE +L A ++A
Sbjct: 227 TCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICHVLSTVCKKEGLNLPSQLARRLAE 286
Query: 550 KAKQNLRKAIMALEACKALNYPFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGK 608
K+ +NLRKA++ EAC+ YPF +DQ IP WE L E A I++ +P+RL+ VRG+
Sbjct: 287 KSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGR 346
Query: 609 IQKLLAEFVHPKLIL 623
+ +LL + P++I+
Sbjct: 347 LYELLTHCIPPEIIM 361
>gi|297610986|ref|NP_001065475.2| Os10g0574500 [Oryza sativa Japonica Group]
gi|255679664|dbj|BAF27312.2| Os10g0574500 [Oryza sativa Japonica Group]
Length = 516
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 141/292 (48%), Gaps = 50/292 (17%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WADK++P+ LN FIC++ A L V C HI+ +G + GKR++ AL+ + +
Sbjct: 178 IWADKYRPNFLNDFICNKDAALELYNQVTAQECNHIIFEGPTSVGKRSMVSALIWDAF-- 235
Query: 407 ACWNEKWPTQ-------------VLVPVASSAHHVELNV-NLQANAKYALMGLVKE-IRD 451
A N K Q + + V S+HHVE+N+ ++ K+ + L+ E I
Sbjct: 236 ATDNLKIEEQTKRFELKGEIAKHIDIRVKISSHHVEVNLADIHGYEKHVITTLLNESIPS 295
Query: 452 NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+I + +IV+++ DK + +Q+ I W + Y K++ CC D ++ E+V+ C
Sbjct: 296 PNSICSHANCRVIVVHDADKLSSDLQHYIGWFLGRYVGCNKIMFCCSDASNL-EAVRHLC 354
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
KV+ + PP + EI++VL IA +E DL A +I + NLR+AI + EA
Sbjct: 355 KVVTLKPPSSDEIIKVLEYIAVQESIDLPRDIARRITMSSGNNLRQAIRSFEA------- 407
Query: 572 FADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
W+ +L ++RGKI+KL+ V P I
Sbjct: 408 ---------TWK----------------AKLYVIRGKIRKLIEHNVSPYFIF 434
>gi|325093236|gb|EGC46546.1| activator 1 subunit 5 [Ajellomyces capsulatus H88]
Length = 352
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 147/298 (49%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 3 LLVDRLRPRSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K ++ + SS +H+E+ + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARIFQTTTNRKLEFNIVSSIYHLEITPSDVGNYDRVV---VQELLKEVAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P EI +VL +KE + + +IA ++ +NLR+A++ LEA A N
Sbjct: 180 LLVRVAAPSEAEICQVLKLAVKKESWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
DD PI P WE ++ +A EI+AD SP R++ VR K+ LL + P IL + +
Sbjct: 240 VTDDTPIPPPDWEALISLIADEIMADRSPGRILQVRAKLYDLLTHCIPPTTILRTLTF 297
>gi|310794493|gb|EFQ29954.1| clamp-loader complex subunit E [Glomerella graminicola M1.001]
Length = 352
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL H+ ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPKSLEALTYHQELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P +I +VL A+KE++ + +IA + +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEQICDVLAVSAKKENWPMVKGLHMRIAQDSDRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + P IL
Sbjct: 241 TDTTPIPPPDWEALISQIAREIIDEHTPSRILQVRAKLYDLLTHCIPPTTIL 292
>gi|91089203|ref|XP_966829.1| PREDICTED: similar to replication factor C subunit 3 [Tribolium
castaneum]
gi|270012468|gb|EFA08916.1| hypothetical protein TcasGA2_TC006622 [Tribolium castaneum]
Length = 354
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 141/280 (50%), Gaps = 13/280 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WADK++P L+ H+ +A L+ L DG+ PH+L+ G G+GK+ M LL E+YG
Sbjct: 2 LWADKYRPKELSSLSYHKQQALDLRNLTKDGDFPHLLVYGPLGAGKKTRIMCLLRELYGP 61
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K T ++ + S +H+E+N ++ N + +M ++K + + +
Sbjct: 62 GVDRLKVETMNFTTPSNKKLEISTVGSNYHIEVNPSDVGINDRVVIMDVIKNVAQSQQLN 121
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+I++ +VD + Q+ ++ M+ Y +C++ILC +I ++++ C I
Sbjct: 122 ANTQREFKVILLTDVDNLTKDAQHALRRTMEKYIANCRIILCTTSISRVIPAIRSRCLCI 181
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I +L +A KE L A +IA K+ +NLR+A++ EACK
Sbjct: 182 RVPAPSIDDITSILTNVAAKESVSLPPELAKRIAEKSDRNLRRALLMCEACKVQKQGLVA 241
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLL 613
Q + W+ + +A++I+ + S L +R + +L+
Sbjct: 242 SQSVSEPDWQIFIRNIASKIVKEQSIATLAKIRENLYELI 281
>gi|398399060|ref|XP_003852987.1| replication factor C subunit 5 [Zymoseptoria tritici IPO323]
gi|339472869|gb|EGP87963.1| hypothetical protein MYCGRDRAFT_85700 [Zymoseptoria tritici IPO323]
Length = 357
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 145/299 (48%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L+ H + L+ L G+ PH+LI G SG+GK+ A L +YG
Sbjct: 3 LLVDKHRPRTLDSLSYHPELSDRLRALAASGDFPHLLIYGPSGAGKKTRISATLRALYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K ++V + SS +H+E+ + N + + L+KE+ A T
Sbjct: 63 GVEKIKIDSRVFQTTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVIQDLLKEV----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V A +++I E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 119 QQVDAAAKQRFKVVLINEADHLTRDAQAALRRTMEKYSPNLRLILVANSTSNIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C +++V P EI +VL ++ + E + T +IA +K+NLR+A++ EA A N
Sbjct: 179 CLLVRVSAPSEEEICKVLAKVGKDERYQACETLEKRIARDSKRNLRRALLMFEAVHAQNE 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D I P WE ++ +A EI+ + SP R++ VR K+ LL + IL + +
Sbjct: 239 TVNDKTSIPPPDWEALIEVIAKEIIEERSPARILQVRAKLYDLLTHCIPATTILKTLTF 297
>gi|116205059|ref|XP_001228340.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176541|gb|EAQ84009.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 352
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 150/297 (50%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 5 VDKHRPRSLDALTYHEELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ ++ + + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGSYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSARQKFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL A+KE + + +IA ++ +NLRKA++ EA A N
Sbjct: 181 LVRVAAPTQDEISDVLAASAKKEGWPVVKGLHQRIAKESGRNLRKALLMFEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + IL + +
Sbjct: 241 TDTTPIPPPDWEALIGQIAKEIMEEHTPARILQVRSKLYDLLTHCIPATTILRTLTF 297
>gi|407928875|gb|EKG21718.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 354
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 146/294 (49%), Gaps = 21/294 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKHRPRSLDALTYHHELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K ++V + +S +H+E+ + N + + L+KE+ A T
Sbjct: 63 GVEKIKIDSRVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEV----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V A ++V+ E D Q ++ M+ Y+ + +LIL E +II +++
Sbjct: 119 QQVDLAARQRFKVVVVNEADHLTRDAQAALRRTMEKYSPNLRLILLAESTSNIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
+++V P +I+E L RKE + + +IA +NLR+A++ EA A N
Sbjct: 179 TLLVRVAAPTEEDIVEALKVAGRKEGWKENEGLNRRIARDCGRNLRRALLMFEAVHAQND 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
++ PI P WE ++ ++A EI+ + SP R++ VR K+ LL + P I+
Sbjct: 239 SVTENTPIPPPDWEALIAQIAKEIVEERSPARIMQVRAKLYDLLTHCIPPTTII 292
>gi|428183987|gb|EKX52843.1| replication factor C subunit 3 [Guillardia theta CCMP2712]
Length = 362
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 151/297 (50%), Gaps = 23/297 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP---HILIKGQSGSGKRALAMALLHEI 403
W DK++P L+ + Q LK + N H+L G G+GK+ MALL EI
Sbjct: 2 LWVDKYRPVQLDKLTYNDGLTQQLKRISAKENVQNMCHLLFYGPPGAGKKTRIMALLREI 61
Query: 404 YGDACWNEKWPTQ--------VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI 455
YG K + V + +S +HVE+N + Y + +E+ +A
Sbjct: 62 YGPGVEKLKVEIKNFKFKSSSVDITFITSNYHVEINPS--DVGPYRDRDVAQEVIKEIAQ 119
Query: 456 TPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
+ SN+ ++++ EVDK + Q ++ M+ YT +C+ +L C + +IE +++
Sbjct: 120 SHAPSNSAAVQFKIVLLNEVDKMSRDGQAALRRTMEKYTSACRFVLVCNNASKVIEPLRS 179
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKE-DFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
C ++V P E+ E+L + RKE +L + A KI+ + +NLRKA++ LE+ +
Sbjct: 180 RCICLRVPAPRDKEVEEILCNVYRKEVKKELPVEAATKISNMSNRNLRKALLMLES-TYV 238
Query: 569 NYPFADD--QPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ D+ QP WE + +A IL D SPK+L+ +RG+ +LLA + P+LIL
Sbjct: 239 KFGVVDESSQPQLADWEVYVGMIAHNILEDQSPKKLLEIRGQFYELLASCIPPELIL 295
>gi|367055376|ref|XP_003658066.1| hypothetical protein THITE_2124521 [Thielavia terrestris NRRL 8126]
gi|347005332|gb|AEO71730.1| hypothetical protein THITE_2124521 [Thielavia terrestris NRRL 8126]
Length = 352
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 149/297 (50%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H +Q L+ L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 5 VDKHRPKSLDALTYHEELSQRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V A ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL A+KE + + +IA ++ +NLRKA++ LEA A N
Sbjct: 181 LVRVAAPTHQEICDVLAASAKKEGWPVVKGLHQRIAEESGRNLRKALLMLEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D I P WE ++ ++A++I+ + +P R++ VR K+ LL + IL + +
Sbjct: 241 TDTTDIPPPDWEALIGQIASDIIQERTPTRILQVRSKLYDLLTHCIPATTILRTLTF 297
>gi|342879794|gb|EGU81029.1| hypothetical protein FOXB_08438 [Fusarium oxysporum Fo5176]
Length = 389
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLETLTYHNELSDRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL A+KE + + +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEEICDVLAVSAKKEGWPVVEGLHKRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D I P WE ++ ++A EIL + SP R++ VR K+ LL + P IL + +
Sbjct: 241 TDSTVIPPADWEALIGQIAKEILEEHSPARILQVRSKLYDLLTHCIPPTTILKTLAF 297
>gi|335772678|gb|AEH58141.1| replication factor C subunit 3-like protein, partial [Equus
caballus]
Length = 304
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 13/240 (5%)
Query: 397 MALLHEIYGDACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLV 446
M +L E+YG + Q + + +S +H+E+N + N+ + + ++
Sbjct: 1 MCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEML 60
Query: 447 KEI--RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
K + L + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I
Sbjct: 61 KTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVI 120
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+++ C ++V P +I VL + +KE +L A ++A K+ +NLRKA++ EA
Sbjct: 121 PPIRSRCLAVRVPAPSIEDICHVLTTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEA 180
Query: 565 CKALNYPFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
C+ YPF DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 181 CRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 240
>gi|67540260|ref|XP_663904.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Aspergillus nidulans
FGSC A4]
gi|40739494|gb|EAA58684.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Aspergillus nidulans
FGSC A4]
gi|259479486|tpe|CBF69752.1| TPA: DNA replication factor C subunit Rfc5, putative
(AFU_orthologue; AFUA_2G12250) [Aspergillus nidulans
FGSC A4]
Length = 352
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ ++ + + L+KEI +
Sbjct: 63 GVEKIKIDNRVFQTTSNRKLEFNIVSSVYHLEITPSDVGTYDRVVVQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I +L A++E ++ + +IA ++ +NLR+A++ EA A + +D
Sbjct: 183 RVAAPSEEDICTILSTSAKREGWNEAPELNKRIAKESGRNLRRALLMFEAIYAQSEKVSD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ +A EILA+ SP RL+ VR ++ LL + IL + +
Sbjct: 243 DTPIPPPDWEALISVIAEEILAERSPARLLQVRARLYDLLTHCIPATTILKTLTF 297
>gi|126644224|ref|XP_001388231.1| replication factor C subunit 5 [Cryptosporidium parvum Iowa II]
gi|126117304|gb|EAZ51404.1| replication factor C subunit 5, putative [Cryptosporidium parvum
Iowa II]
Length = 345
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 150/298 (50%), Gaps = 24/298 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIY 404
W DK+QP L C++ LL+++ + GN PH+L G SG GK+ ++LHEI+
Sbjct: 2 LWIDKYQPRYLRDLKCNKELNSLLEKITSNSNGNIPHLLFYGPSGGGKKVRISSVLHEIF 61
Query: 405 GDACWNEKWPTQVLVP--------VASSAHHVELNV-NLQANAKYALMGLVKEIRDNLAI 455
GD+ +K ++ P + S HH++++ +L L+K++ +
Sbjct: 62 GDSV--DKVKADMIKPEGTNSEFVLCQSPHHMQISAPDLGTKDGIVTQYLIKQLSSQMGA 119
Query: 456 TPEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
S + I E D + Q ++ M+ Y+++ +LIL CE II +++ C
Sbjct: 120 NSFFSKGPNYRVFTILEADVLSLKAQAGLRRTMEKYSNNSRLILHCEQLSSIIPPLRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY- 570
I+V P E+++VL I+ E+ + + +I T+++ NLR+AI+ LE ++
Sbjct: 180 LCIRVPLPSPEEVLQVLRFISNSENLQVPNNYLEQIVTESECNLRRAILILETAHTQSFS 239
Query: 571 --PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626
P A + L W++V I++A I+ +P PK L+ VR + LL + LIL+ +
Sbjct: 240 NPPSA----LKLPWQKVCIDIATSIVKNPHPKTLLDVREPLYDLLCSCIPADLILVTL 293
>gi|440803530|gb|ELR24424.1| replication factor C (activator 1) 3, putative [Acanthamoeba
castellanii str. Neff]
Length = 303
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 135/243 (55%), Gaps = 19/243 (7%)
Query: 397 MALLHEIYGDAC-------WNEKWP--TQVLVPVASSAHHVELNVNLQANAKYALMGLVK 447
MALL E++ + K P T + + + SSA+H+ELN ++A Y +V+
Sbjct: 1 MALLRELFDAGVEKLKIDHRDFKLPSSTTIELSIVSSAYHIELN---PSDAGYHDRLVVQ 57
Query: 448 EIRDNLAITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501
E+ +A +P + ++V+ EV++ ++ Q+ ++ M+ Y C+LILCC
Sbjct: 58 EVIKEIAQSPPLDTTNKPPFKVVVLNEVERLSKEAQHALRRTMEKYMSVCRLILCCNSTS 117
Query: 502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMA 561
+I+ V++ C +I+V P E+ + L I++KE L A IA ++ +NLRKAI+
Sbjct: 118 KVIDPVRSRCLMIRVAAPSLDEVTKSLQAISKKEGITLPPELARSIAVQSDRNLRKAILM 177
Query: 562 LEACKALNYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
L+A YPF Q + + WEE ++ LA I+ + SPKRL+ VR ++ +LL+ + P+
Sbjct: 178 LQATHTAKYPFEKGQRVEMTDWEEFIVRLAQFIIDEQSPKRLMDVRNQLYELLSHCIPPE 237
Query: 621 LIL 623
+I+
Sbjct: 238 VII 240
>gi|340975786|gb|EGS22901.1| hypothetical protein CTHT_0013780 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 148/297 (49%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PHIL+ G SG+GK+ +A L E++G
Sbjct: 5 VDKHRPRSLDQLTYHTELSERLRSLAQSGDFPHILVYGPSGAGKKTRIVATLKELFGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSNNRKLEFNIVASVYHLEITPSDVGNYDRVVIQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL A++E + + +IA ++ +NLRKA++ LE A N
Sbjct: 181 LVRVAAPTHEEICDVLAASAKREGWPVVKGLHQRIAVESGRNLRKALLMLETVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + IL + +
Sbjct: 241 TDTTPIPPPDWEALIGQIAREIMEEHTPARILQVRSKLYDLLTHCIPATTILRTLAF 297
>gi|449299018|gb|EMC95032.1| hypothetical protein BAUCODRAFT_523426 [Baudoinia compniacensis
UAMH 10762]
Length = 356
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 144/295 (48%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L+ H + L+ L G+ PH+LI G SG+GK+ A L +YG
Sbjct: 3 LLVDKHRPRTLDTLTYHTDLSDRLRSLAASGDFPHLLIYGPSGAGKKTRVSATLRALYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K ++V + SS +H+E+ + N + + L+KE+ +
Sbjct: 63 GAEKIKIDSRVFQTTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ C ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRCLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI VL ++ +KE + +IA + +NLR+A++ EA A N +
Sbjct: 183 RVAAPTEEEIAGVLARVGKKEGYKSCEPLERRIAKDSGRNLRRALLMFEAVHAQNDNVTE 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
PI P WE ++ +A E++ + SP R++ VR K+ LL+ + +L + +
Sbjct: 243 KTPIPPPDWEALIEVIAKEMIEERSPARILQVRAKLYDLLSHCIPATTVLKTLTF 297
>gi|121715792|ref|XP_001275505.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
clavatus NRRL 1]
gi|119403662|gb|EAW14079.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 147/295 (49%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPRSLDALSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D + Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I EVL +KE + + +IA ++++NLR+A++ EA A D
Sbjct: 183 RVAAPTEEQICEVLENAGKKEGWPEAPGLNQRIAKESERNLRRALLMFEAIYAQTEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+ PI P WE ++ +A EILA+ SP RL+ VR ++ LL + P I+ + +
Sbjct: 243 NTPIPPPDWEALISLIADEILAERSPARLLQVRARLYDLLTHCIPPTTIIKTLTF 297
>gi|367035830|ref|XP_003667197.1| hypothetical protein MYCTH_2312770 [Myceliophthora thermophila ATCC
42464]
gi|347014470|gb|AEO61952.1| hypothetical protein MYCTH_2312770 [Myceliophthora thermophila ATCC
42464]
Length = 352
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 5 VDKHRPRSLDALTYHGELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELFGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPE 458
K + + +S +H+E+ ++ + + L+KE+ A T +
Sbjct: 65 EKIKIDARAFQTSSNRKLEFNIVASVYHLEITPSDVGTYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL A+KE + + +IA ++ +NLRKA++ LEA A N
Sbjct: 181 LVRVAAPTHEEICDVLAASAKKEGWPVVKGLHQRIAEESGRNLRKALLILEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + IL + +
Sbjct: 241 TDTTPIPPPDWEALIGQIAKEIMEEHTPARILQVRSKLYDLLTHCIPATTILRTLTF 297
>gi|302675274|ref|XP_003027321.1| hypothetical protein SCHCODRAFT_61292 [Schizophyllum commune H4-8]
gi|300101007|gb|EFI92418.1| hypothetical protein SCHCODRAFT_61292 [Schizophyllum commune H4-8]
Length = 356
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 146/296 (49%), Gaps = 25/296 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P SL+ H+ ++ L+ L G+ PHIL G SG+GK+ +L E++G
Sbjct: 3 LWVDQYRPRSLSELHYHQGLSKRLQSLASSGDFPHILFYGPSGAGKKTRISCVLKELFGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K ++ + + S H+E+ + N + ++E+ +A T
Sbjct: 63 GAEKLKIDQRIFLSPSKRKLEINLVQSNFHIEITPSEAGNYDRVV---IQELLKEIAQTQ 119
Query: 458 EVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V NA ++VI E D + Q ++ M+ Y + ++ILC +I +K+ C
Sbjct: 120 QVDLNAKQRFKVVVINEADGLSRDAQAALRRTMEKYMSNLRIILCANSTSRLIAPIKSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA---- 567
+++V P E+M VL +AR+ FDL +I + NLRKAI+ LEA K
Sbjct: 180 LLMRVAAPNAGEMMSVLDYVARRVGFDLPPEAGQQIVADSGGNLRKAILVLEALKMQSPD 239
Query: 568 LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
L P A +P WE ++A I+A+ SP R++ VR K +LL+ + P +IL
Sbjct: 240 LTGPLAIAKP---DWETYCHKVADLIVAEQSPARVMEVRAKFYELLSHCIPPTVIL 292
>gi|402076632|gb|EJT72055.1| replication factor C subunit 5 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 352
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L+ L G+ PH+LI G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHEALSDRLRSLARSGDFPHLLIYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNKKLEFNIVASVYHLEITPSDVGNYDRVVIQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P E+ VL A++E + +S +IA ++ +NLR+A++ LE A N
Sbjct: 181 LVRVAAPTEEEVCTVLASSAKREGWAVSEKLHQRIAKESGRNLRRAMLMLETVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D I P WE ++ ++A EI+ + +P R++ VR K LL + P IL + +
Sbjct: 241 EDTTSIPPPDWEALVGQIAKEIMDEHTPARILQVRAKFYDLLTHCIPPTTILKTLTF 297
>gi|340383712|ref|XP_003390360.1| PREDICTED: replication factor C subunit 3-like [Amphimedon
queenslandica]
Length = 312
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
Query: 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
S+ +V+ EVD+ + Q+ ++ M+ YT +C LIL C +I ++K+ C ++V P
Sbjct: 84 SDCFVVLTEVDRLTKDAQHALRRTMELYTGTCHLILVCNSTSKLIPAIKSRCLAVRVPAP 143
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP 579
EI VL + KE + T A KIA K++++LRKAI+ E C+ YPF DDQ +P
Sbjct: 144 TIDEICSVLQYVCHKESLTIPDTLAKKIAEKSERSLRKAILLCEVCRVQQYPFNDDQVVP 203
Query: 580 -LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
WE L E AA I+ + SPKRL+ VRG+ +LL + P +I
Sbjct: 204 DCEWEVFLRETAAMIITEQSPKRLLEVRGRYYELLTHCIPPDIIF 248
>gi|430814355|emb|CCJ28396.1| unnamed protein product [Pneumocystis jirovecii]
Length = 351
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 148/299 (49%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ DK++P SL+ H ++ LK L + PH+L+ G GSGK+ +A L E+YG
Sbjct: 3 LFIDKYRPKSLDHMHFHEELSRKLKALAKSSDFPHLLVYGIPGSGKKTRVLATLRELYGS 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K + + + SS +H+E + N + + L+KEI A T
Sbjct: 63 GVEKLKIDQKTFISSSNKKIKINIISSNYHLEFTPSDSGNYDRMVIQDLLKEI----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V + +++I E D + Q ++ M+ Y + +LIL I+ +++
Sbjct: 119 QQVDTSAKQRFKVVIINESDHLSGEAQAALRRTMEKYYPNLRLILLASSTSKIMAPIQSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C +++V P EI +L +A +E F L KIA +K+NLR+A++ LE A +
Sbjct: 179 CFLVRVSAPKLEEIATILKYVASEEHFSLPDQLCNKIALDSKRNLRRALLMLETIYAKDS 238
Query: 571 PFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
++ +PL WE + ++A I+ + +P +++ VRG + +L+ + P LIL V+ +
Sbjct: 239 NLHENTIVPLPDWETYINQIAESIIQEQTPAKILQVRGMLYELITHCIPPPLILKVLTF 297
>gi|242809831|ref|XP_002485455.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716080|gb|EED15502.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
stipitatus ATCC 10500]
Length = 352
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 147/298 (49%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPRSLDSLTYHPELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + +S +H+E+ + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVV---VQELLKEVAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P +I VL A+KE++ S +IA ++ +NLR+A++ EA A N
Sbjct: 180 LLVRVAAPSELDICAVLRSAAQKENWTQSDALNVRIARESGRNLRRALLMFEAIYAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+D PI P WE ++ +A EILA+ SP R++ VR ++ LL + P +L + +
Sbjct: 240 VSDKTPIPPPDWEALISVVADEILAERSPARILQVRERLYDLLTHCIPPTTVLKTLTF 297
>gi|315050902|ref|XP_003174825.1| replication factor C subunit 5 [Arthroderma gypseum CBS 118893]
gi|311340140|gb|EFQ99342.1| replication factor C subunit 5 [Arthroderma gypseum CBS 118893]
Length = 352
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H+ + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLKALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + SS +H+EL + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGNYDRVV---VQELLKEIAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P +I +VL +KE ++ ++A ++ +NLR+A++ EA A N
Sbjct: 180 LLVRVAAPSEEDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+D+ PI P WE ++ +A EI+A+ SP R++ VR ++ LL + P IL + +
Sbjct: 240 VSDNTPIPPPDWEALISVVADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTF 297
>gi|170096496|ref|XP_001879468.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645836|gb|EDR10083.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 356
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P +L+ HR ++ LK L G+ PH+L G SG+GK+ L +++G+
Sbjct: 3 LWVDEYRPRTLDALHYHRGLSERLKSLASSGDFPHMLFYGPSGAGKKTRITCTLRQLFGN 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K ++ + + S H+E+ + N + + L+KEI +
Sbjct: 63 GVEKLKIDQRIFLSPSKRKLEINIVQSNFHIEITPSEAGNYDRLVIQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + +++I E D + Q ++ M+ Y + ++ILC +I +K+ C ++
Sbjct: 123 LNAKQRFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIKSRCLLM 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA----LNY 570
+V P E++ VL +AR+ FDL KI N+RKAI+ LEA K L
Sbjct: 183 RVPAPSPEEMLNVLELVARRAGFDLPPEAGMKIVDDCGGNMRKAILVLEALKMQSPDLTG 242
Query: 571 PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
P +P WE ++A I+++ SP R++ VR K +LL+ + P +IL
Sbjct: 243 PLTIAKP---DWETYCHKVADLIVSEQSPARVMEVRAKFYELLSHCIPPTVIL 292
>gi|358365640|dbj|GAA82262.1| DNA replication factor C subunit Rfc5 [Aspergillus kawachii IFO
4308]
Length = 352
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKLRPRSLDALTYHPELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ + N + + L+KEI +
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI VL A+KE + + +IA ++ +NLR+A++ EA A N D
Sbjct: 183 RVAAPNEEEICTVLRNAAKKEGWPEASGLNKRIAKESGRNLRRALLMFEAIYAQNEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ I P WE ++ A EILA+ SP RL+ VR ++ LL + P I+
Sbjct: 243 NTLIPPPDWEALIALTAEEILAERSPARLLQVRARLYDLLTHCIPPTTII 292
>gi|388582655|gb|EIM22959.1| DNA clamp loader [Wallemia sebi CBS 633.66]
Length = 356
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 153/294 (52%), Gaps = 18/294 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ DK++P SL+ H ++ L G+ PH+L G SG+G++ M L E++G
Sbjct: 3 LYVDKYRPKSLDELDYHHDITNRIRSLARSGDFPHLLFYGPSGAGRKTRIMCTLRELFGQ 62
Query: 407 ACWN-EKWPTQVLVPVASSAHHVELNVNLQANAKYAL----MG-----LVKEIRDNLAIT 456
E+ V + S +++N+ +Q+N + +G ++++I +A T
Sbjct: 63 GVEKLEQLKIDQRVFLTPSNRKLDVNI-VQSNYHIEITPSDVGQYDRIIIQDILKEIAQT 121
Query: 457 PEV-SNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
++ +NA +++I E D+ + Q ++ M+ Y + ++ILC + II +++
Sbjct: 122 QQIDANAKHKFKVVIINEADQLSRDAQAALRRTMEKYMANLRIILCAQTTSKIISPIRSR 181
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C ++++ P ++ VL +A+KE F + A +I +A NLRKA++ LEA + +
Sbjct: 182 CLLMRIPAPQPEQMTIVLNHVAKKERFQIPDDVAQQIGKEATGNLRKALLVLEAMRMQSP 241
Query: 571 PF-ADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F D Q W+ I +A +I +DPSP+ L+ VRGK+ +L+ + P LIL
Sbjct: 242 NFDMDIQIAKPDWQSYTISVAKDITSDPSPEGLLKVRGKVYELITHCIPPTLIL 295
>gi|392593574|gb|EIW82899.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 360
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 141/293 (48%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK +P +L+ H + LK L G+ PH+L G SG+GK+ L +++G
Sbjct: 3 LWVDKFRPKTLDDLHYHHSLSARLKSLAASGDFPHMLFYGPSGAGKKTRVTCTLRQLFGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K +V + + S H+E+ + N + + L+KEI +
Sbjct: 63 GVEKLKIDQRVFLSPSKRKLEINIVQSNFHIEITPSEAGNYDRLVIQELLKEIAQTQQVD 122
Query: 457 PEVSNAM--IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+VI E D + Q ++ M+ Y + ++ILC +I +K+ C ++
Sbjct: 123 LNARQRFKAVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCLLM 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA----LNY 570
+V P T E+ VL +A+K FD+ +++IA ++ N+RKA++ EA K L+
Sbjct: 183 RVAAPTTEEMQVVLEHVAKKLKFDMPPEASSQIAEESGGNMRKALLVFEALKMQSPDLSG 242
Query: 571 PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
P + +P WE ++A IL D SP +++ VR K+ +LL+ + P +IL
Sbjct: 243 PLSIAKP---DWETYCRKVAQLILKDQSPSQVMEVRSKLYELLSHCIPPTIIL 292
>gi|213401579|ref|XP_002171562.1| replication factor C subunit 5 [Schizosaccharomyces japonicus
yFS275]
gi|211999609|gb|EEB05269.1| replication factor C subunit 5 [Schizosaccharomyces japonicus
yFS275]
Length = 358
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 19/295 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P +L H +A+ L L PH+LI G SG+GK+ +ALL E++G
Sbjct: 2 LWLDQYRPKTLANLDYHTEQAERLTHLAASNEFPHLLIYGPSGAGKKTRVVALLRELFGP 61
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMG-LVKEIRDNLAIT 456
K +V V + SS +H+EL + N +M L+K++ + +
Sbjct: 62 GAEKLKIDQRVFLTPSNRKIQVNIVSSLYHLELTPSDVGNYDRVVMQELLKDVAQSAPVD 121
Query: 457 PEVSNAM--IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ +VI E D Q ++ M+ Y+D+ +LIL IIE V++ +I
Sbjct: 122 IQAKKRFKAVVINEADSLTRDAQAALRRTMEKYSDNIRLILIANSTSKIIEPVRSRTLLI 181
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP--- 571
+V P EI+ VL ++ +++ + + + KIA + +NLRKA++ LE A P
Sbjct: 182 RVAAPTHTEIVSVLTKVLQQQSLEAAPSLLNKIAQDSDRNLRKALLILETLYA-KAPGSR 240
Query: 572 --FADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ IP W+E + ++A ++A+ SP R++ VR + LL+ + P ++L
Sbjct: 241 QIMGNTGSIPKPDWQEFIDKVADAMIAEQSPNRILSVRSMLYDLLSHCIPPSIVL 295
>gi|71001752|ref|XP_755557.1| DNA replication factor C subunit Rfc5 [Aspergillus fumigatus Af293]
gi|66853195|gb|EAL93519.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
fumigatus Af293]
Length = 294
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 143/292 (48%), Gaps = 13/292 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVIQELLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL ++E + + +IA ++ +NLR+A++ EA A D
Sbjct: 183 RVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLV 625
+ PI P WE ++ +A EILA+ SP RL+ VR ++ LL + P I+ V
Sbjct: 243 NTPIPPPDWEALISLIADEILAERSPARLLQVRARLYDLLTHCIPPTTIIKV 294
>gi|327349013|gb|EGE77870.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis ATCC 18188]
Length = 352
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 146/298 (48%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H + LK L G+ PH+L+ G SG+GK+ +A L E++G
Sbjct: 3 LLVDRLRPRNLDALTYHHDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLRELFGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + SS +H+E+ + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVSSIYHLEITPSDVGNYDRVV---VQELLKEVAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDLSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P EI + L +KE + + +IA ++ +NLR+A++ LEA A N
Sbjct: 180 LLVRVAAPTEAEICQALQVAEKKEGWAEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
DD PI P WE ++ +A EI+A+ SP R++ VR K+ LL + P IL + +
Sbjct: 240 VTDDTPIPPPDWEALISLIADEIMAERSPARILQVRAKLYDLLTHCIPPTTILRTLTF 297
>gi|222613321|gb|EEE51453.1| hypothetical protein OsJ_32563 [Oryza sativa Japonica Group]
Length = 648
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 55/297 (18%)
Query: 347 FWADKHQPSSLNGFICHRHEA-----QLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
WADK++P+ LN FIC++ A Q V C HI+ +G + GKR++ AL+
Sbjct: 289 IWADKYRPNFLNDFICNKDAALELYNQGFTPQVTAQECNHIIFEGPTSVGKRSMVSALIW 348
Query: 402 EIYGDACWNEKWPTQ-------------VLVPVASSAHHVELNV-NLQANAKYALMGLVK 447
+ + A N K Q + + V S+HHVE+N+ ++ K+ + L+
Sbjct: 349 DAF--ATDNLKIEEQTKRFELKGEIAKHIDIRVKISSHHVEVNLADIHGYEKHVITTLLN 406
Query: 448 E-IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
E I +I + +IV+++ DK + +Q+ I W + Y K++ CC D ++ E+
Sbjct: 407 ESIPSPNSICSHANCRVIVVHDADKLSSDLQHYIGWFLGRYVGCNKIMFCCSDASNL-EA 465
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
V+ CKV+ + PP + EI++VL IA +E DL A +I + NLR+AI + EA
Sbjct: 466 VRHLCKVVTLKPPSSDEIIKVLEYIAVQESIDLPRDIARRITMSSGNNLRQAIRSFEAT- 524
Query: 567 ALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
W+ +L ++RGKI+KL+ V P I
Sbjct: 525 ---------------WK----------------AKLYVIRGKIRKLIEHNVSPYFIF 550
>gi|218185065|gb|EEC67492.1| hypothetical protein OsI_34758 [Oryza sativa Indica Group]
Length = 648
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 55/297 (18%)
Query: 347 FWADKHQPSSLNGFICHRHEA-----QLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
WADK++P+ LN FIC++ A Q V C HI+ +G + GKR++ AL+
Sbjct: 289 IWADKYRPNFLNDFICNKDAALELYNQGFTPQVTAQECNHIIFEGPTSVGKRSMVSALIW 348
Query: 402 EIYGDACWNEKWPTQ-------------VLVPVASSAHHVELNV-NLQANAKYALMGLVK 447
+ + A N K Q + + V S+HHVE+N+ ++ K+ + L+
Sbjct: 349 DAF--ATDNLKIEEQTKRFELKGEIAKHIDIRVKISSHHVEVNLADIHGYEKHVITTLLN 406
Query: 448 E-IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
E I +I + +IV+++ DK + +Q+ I W + Y K++ CC D ++ E+
Sbjct: 407 ESIPSPNSICSHANCRVIVVHDADKLSSDLQHYIGWFLGRYVGCNKIMFCCSDASNL-EA 465
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
V+ CKV+ + PP + EI++VL IA +E DL A +I + NLR+AI + EA
Sbjct: 466 VRHLCKVVTLKPPSSDEIIKVLEYIAVQESIDLPRDIARRITMSSGNNLRQAIRSFEAT- 524
Query: 567 ALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
W+ +L ++RGKI+KL+ V P I
Sbjct: 525 ---------------WK----------------AKLYVIRGKIRKLIEHNVSPYFIF 550
>gi|145232232|ref|XP_001399568.1| replication factor C subunit 5 [Aspergillus niger CBS 513.88]
gi|134056481|emb|CAK37570.1| unnamed protein product [Aspergillus niger]
gi|350634494|gb|EHA22856.1| hypothetical protein ASPNIDRAFT_46970 [Aspergillus niger ATCC 1015]
Length = 352
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 145/295 (49%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKLRPRSLDALTYHPELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ + N + + L+KEI +
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL A+KE + + +IA ++ +NLR+A++ EA A N D
Sbjct: 183 RVAAPSEEDICTVLKNAAKKEGWPEASGLNKRIAKESGRNLRRALLMFEAIYAQNEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+ I P WE ++ +A EILA+ SP RL+ VR ++ LL + P I+ + +
Sbjct: 243 NTLIPPPDWEALIALIAEEILAERSPARLLQVRARLYDLLTHCIPPTTIIKCLTF 297
>gi|159129619|gb|EDP54733.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
fumigatus A1163]
Length = 355
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVIQELLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL ++E + + +IA ++ +NLR+A++ EA A D
Sbjct: 183 RVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+ PI P WE ++ +A EILA+ SP RL+ VR ++ LL + P I+ + +
Sbjct: 243 NTPIPPPDWEALISLIADEILAERSPARLLQVRARLYDLLTHCIPPTTIIKTLTF 297
>gi|119481309|ref|XP_001260683.1| DNA replication factor C subunit Rfc5, putative [Neosartorya
fischeri NRRL 181]
gi|119408837|gb|EAW18786.1| DNA replication factor C subunit Rfc5, putative [Neosartorya
fischeri NRRL 181]
Length = 355
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL ++E + + +IA ++ +NLR+A++ EA A D
Sbjct: 183 RVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+ PI P WE ++ +A EILA+ SP RL+ VR ++ LL + P I+ + +
Sbjct: 243 NTPIPPPDWEALISLIADEILAERSPARLLQVRARLYDLLTHCIPPTTIIKTLTF 297
>gi|212537245|ref|XP_002148778.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
marneffei ATCC 18224]
gi|210068520|gb|EEA22611.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
marneffei ATCC 18224]
Length = 352
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 146/298 (48%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P SL+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPRSLDSLTYHPELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + +S +H+E+ + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVV---VQELLKEVAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P EI VL A KE++ +IA ++ +NLR+A++ EA A N
Sbjct: 180 LLVRVAAPSETEICAVLKSAAAKENWAPCDELNMRIAKESGRNLRRALLMFEAIYAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+D PI P WE ++ +A EILA+ SP R++ VR ++ LL + P ++L + +
Sbjct: 240 VSDKTPIPPPDWEALISMVADEILAERSPARILQVRERLYDLLTHCIPPTMVLKTLTF 297
>gi|150864072|ref|XP_001382764.2| DNA replicationn factor C [Scheffersomyces stipitis CBS 6054]
gi|149385328|gb|ABN64735.2| DNA replicationn factor C [Scheffersomyces stipitis CBS 6054]
Length = 363
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 147/311 (47%), Gaps = 29/311 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H +Q L+ L G+ PH+LI G SG+GK+ A L+EI+G
Sbjct: 3 LWVDKYRPKTLDQLSFHDSISQNLRALARSGDFPHLLIYGPSGAGKKTRIYATLNEIFGS 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K + V V SSA+H+E+ ++ N + + L+K++ +
Sbjct: 63 QVEKLKIDVKTFVTSSNRKMEFNVLSSAYHLEITPSDMGNNDRVVISDLLKDVASTEQVD 122
Query: 457 PEVSNA--------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
N ++VI E D + Q ++ M+ Y+ + +LIL C +II +K
Sbjct: 123 FSHQNTSKTKHRFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIPPIK 182
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-------FAAKIATKAKQNLRKAIMA 561
+ ++++ P T I +L Q+A+KE S + + +A A +NLRKA+++
Sbjct: 183 SRTLLVRIPSPSTTAISSILGQVAKKEGIKFSSSNELDIQKYLVTLADTANRNLRKALLS 242
Query: 562 LEACKALNYPFADDQP----IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFV 617
E N D + L WEE++ ++ I + + L VR + +LLA +
Sbjct: 243 FETVAMQNETIQLDNKTLTIVTLDWEEIIKNMSNTIRINRNVATLASVRVVLYELLAHCI 302
Query: 618 HPKLILLVMHY 628
P++IL + +
Sbjct: 303 PPRIILKTLMF 313
>gi|302509034|ref|XP_003016477.1| hypothetical protein ARB_04766 [Arthroderma benhamiae CBS 112371]
gi|291180047|gb|EFE35832.1| hypothetical protein ARB_04766 [Arthroderma benhamiae CBS 112371]
Length = 356
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 149/299 (49%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H+ + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K +V + SS +H+EL ++ + + L+KEI A T
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEI----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 119 QQVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
+++V P +I +VL +KE ++ ++A ++ +NLR+A++ EA A N
Sbjct: 179 TLLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNE 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+D+ PI P WE ++ +A EI+A+ SP R++ VR ++ LL + P IL + +
Sbjct: 239 KVSDNTPIPPPDWEALISVVADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTF 297
>gi|296812353|ref|XP_002846514.1| activator 1 38 kDa subunit [Arthroderma otae CBS 113480]
gi|238841770|gb|EEQ31432.1| activator 1 38 kDa subunit [Arthroderma otae CBS 113480]
Length = 336
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 146/298 (48%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPKTLDALTYHHDLSARLKALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + SS +H+EL + N + V+E+ +A T
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGNYDRVV---VQELLKEIAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P +I + L +KE ++ ++A ++ +NLR+A++ EA A N
Sbjct: 180 LLVRVAAPSEDDICQALKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNDK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+D+ PI P WE ++ +A EI+A+ SP R++ VR ++ LL + P IL + +
Sbjct: 240 VSDNTPIPPPDWEALIALIADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTF 297
>gi|327303738|ref|XP_003236561.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326461903|gb|EGD87356.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 352
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 149/299 (49%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H+ + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K +V + SS +H+EL ++ + + L+KEI A T
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGTYDRVVIQELLKEI----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 119 QQVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
+++V P +I +VL +KE ++ ++A ++ +NLR+A++ EA A N
Sbjct: 179 TLLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNE 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+D+ PI P WE ++ +A EI+A+ SP R++ VR ++ LL + P IL + +
Sbjct: 239 KVSDNTPIPPPDWEALISVVADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTF 297
>gi|396464153|ref|XP_003836687.1| similar to DNA replication factor C subunit Rfc5 [Leptosphaeria
maculans JN3]
gi|312213240|emb|CBX93322.1| similar to DNA replication factor C subunit Rfc5 [Leptosphaeria
maculans JN3]
Length = 355
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 145/290 (50%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKHRPRNLDALSYHPGLSERLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + +S +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI EVL ++ +KE + + +IA ++ +NLRKA++ EA A N D
Sbjct: 183 RVSAPTETEICEVLSKVGKKEGWKEVESLNRRIAKESGRNLRKALLMFEAVHAQNEKITD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
I P WE ++ ++A +I+ + SP+RL+ VR + LL+ + I+
Sbjct: 243 QTHIPPPDWEALIEQIARQIVEERSPQRLLQVRASLYDLLSHCIDSTTII 292
>gi|380484475|emb|CCF39972.1| replication factor C subunit 5 [Colletotrichum higginsianum]
Length = 352
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 21/292 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL H+ + L L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPKSLEALSYHQDLSDRLSSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVIQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P +I +VL A+KE++ + +IA ++ +NLR+A++ EA A N
Sbjct: 181 LVRVAAPTHEQICDVLAVSAKKENWPMVKGLHMRIAQESGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D PI P WE ++ ++A EI+ + +P R++ VR K+ LL + IL
Sbjct: 241 TDTTPIPPPDWEALISQIAREIIDEHTPARILQVRAKLYDLLTHCIPATTIL 292
>gi|320035707|gb|EFW17648.1| hypothetical protein CPSG_06091 [Coccidioides posadasii str.
Silveira]
gi|392868672|gb|EAS34460.2| replication factor C subunit 5 [Coccidioides immitis RS]
Length = 352
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 145/295 (49%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K +V + +S +H+E+ ++ + + L+KEI +
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI +VL ++E + + +IA ++ +NLR+A++ EA A N D
Sbjct: 183 RVAAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALLMFEAVYAQNEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D + P WE ++ +A EI+A+ SP R++ VR ++ LL + P IL + +
Sbjct: 243 DTVVPPPDWEALISLIADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTF 297
>gi|320586379|gb|EFW99058.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 352
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 143/297 (48%), Gaps = 21/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDTLTYHPELTDRLRALARSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 65 EKIKIDARVFQTTSNRKLEFNIVASVYHMEITPSDVGNYDRVVVQDLLKEV----AQTQQ 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V A ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 121 VDQAARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLATSTANIIAPIRSRTL 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI VL A++E + ++A + +NLR+A++ EA A N
Sbjct: 181 LVRVAAPSHDEICGVLAAAAQREGWPAVPALQRRVAEGSGRNLRRALLMYEAVHAQNEKV 240
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D PI P WE ++ +A EI+ + +P R++ VR K+ LL + P IL + +
Sbjct: 241 VDSTPIPPPDWEALIGHVAKEIMDEHTPARILQVRAKLYDLLTHCIPPTTILRTLTF 297
>gi|258565365|ref|XP_002583427.1| activator 1 38 kDa subunit [Uncinocarpus reesii 1704]
gi|237907128|gb|EEP81529.1| activator 1 38 kDa subunit [Uncinocarpus reesii 1704]
Length = 352
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 147/295 (49%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRQRPRTLDALTYHHDLSARLKSLAQRGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K +V + +S +H+E+ ++ + + L+KEI +
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGTYDRVVIQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTANIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI +VL A+KE + + +IA ++ +NLR+A++ LEA A N +
Sbjct: 183 RVAAPTEDEICQVLKAAAKKEGWTEAPGLNKRIAKESGRNLRRALLMLEAVYAQNEKVTN 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D + P WE ++ +A EI+A+ SP R++ +R ++ LL + P I+ + +
Sbjct: 243 DTVVPPPDWEALISVVAEEIMAERSPARILQIRARLYDLLTHCIPPTTIIKTLTF 297
>gi|326485099|gb|EGE09109.1| DNA replication factor C subunit Rfc5 [Trichophyton equinum CBS
127.97]
Length = 352
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 149/299 (49%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H+ + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K +V + SS +H+EL ++ + + L+KEI A T
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEI----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 119 QQVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
+++V P +I +VL +KE ++ ++A ++ +NLR+A++ EA A N
Sbjct: 179 TLLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNE 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+D+ PI P WE ++ +A EI+A+ SP R++ VR ++ LL + P IL + +
Sbjct: 239 KVSDNTPIPPPDWEALISVVADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLAF 297
>gi|452003770|gb|EMD96227.1| hypothetical protein COCHEDRAFT_1152298 [Cochliobolus
heterostrophus C5]
Length = 355
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 143/290 (49%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + +S +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI +VL ++ +KE + + +IA + +NLRKA++ EA A N D
Sbjct: 183 RVAAPTEAEICDVLSKVGKKEGWKDVESLHQRIAKDSGRNLRKALLMFEAVHAQNEKITD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
I P WE ++ ++A +I+ + SP+RL+ VR + LL+ + P I+
Sbjct: 243 QTHIPPPDWEALIEQIARQIVEERSPQRLLQVRASLYDLLSHCIDPTTII 292
>gi|451855756|gb|EMD69047.1| hypothetical protein COCSADRAFT_31825 [Cochliobolus sativus ND90Pr]
Length = 355
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 143/290 (49%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + +S +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LGAKQRFKIVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI +VL ++ +KE + + +IA + +NLRKA++ EA A N D
Sbjct: 183 RVAAPTEAEICDVLSKVGKKEGWKDIESLHQRIAKDSGRNLRKALLMFEAVHAQNEKITD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
I P WE ++ ++A +I+ + SP+RL+ VR + LL+ + P I+
Sbjct: 243 QTHIPPPDWEALIEQIARQIVEERSPQRLLQVRASLYDLLSHCIDPTTII 292
>gi|169774819|ref|XP_001821877.1| replication factor C subunit 5 [Aspergillus oryzae RIB40]
gi|238496571|ref|XP_002379521.1| DNA replication factor C subunit Rfc5, putative [Aspergillus flavus
NRRL3357]
gi|83769740|dbj|BAE59875.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694401|gb|EED50745.1| DNA replication factor C subunit Rfc5, putative [Aspergillus flavus
NRRL3357]
gi|391868800|gb|EIT78009.1| replication factor C, subunit RFC3 [Aspergillus oryzae 3.042]
Length = 352
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK +P SL H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKLRPRSLEALSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ + N + + L+KEI +
Sbjct: 63 GVEKIKIDARVYQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D + Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL ++E + + KIA ++ +NLR+A++ EA A + +
Sbjct: 183 RVAAPTEDQICSVLSAAGKREGWPEAPGLNKKIAKESGRNLRRALLMFEAIYAQSEKVTE 242
Query: 575 DQPIPLGWEEVLIELAA-EILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+ PIP EVLI + A EILA+ SP RL+ VR ++ LL + P IL + +
Sbjct: 243 NTPIPPPDWEVLISITADEILAERSPARLLQVRARLYDLLTHCIPPTTILKTLTF 297
>gi|328855373|gb|EGG04500.1| hypothetical protein MELLADRAFT_37376 [Melampsora larici-populina
98AG31]
Length = 363
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 19/300 (6%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
LR DKH+P SL+ H ++ L + PH L G SG+GK+ A L E+
Sbjct: 3 LRSLLVDKHRPKSLDDLDYHPQLTNRIRSLAQTADFPHCLFYGPSGAGKKTRIAATLREL 62
Query: 404 YGDACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+G + +V V + S +H+EL +L + + ++KE+
Sbjct: 63 FGPGAAKLRIEQRVFMTPSRRRLEVQIIESNYHLELTPADLAQWDRSVIQDILKEVGGTT 122
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+ S ++VI+ D+ Q ++ M+ +T S +LILC II +++ C
Sbjct: 123 QLDSTASRKFKVVVIHCADQLTLDAQAALRRTMERHTSSLRLILCANSTSKIIGPIRSRC 182
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDF--DLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+++V P +I++VL +A KEDF A IA A+ NLRKAI+ LEA +A +
Sbjct: 183 LLLRVGAPHPDQIVKVLQSVASKEDFIRQFPEETAMSIALSAEGNLRKAILTLEAIRAQD 242
Query: 570 YPFADDQP----IP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
F+ +P IP + W+ + +LA I + SP++L+ R I +LL + P ++++
Sbjct: 243 DTFSKPRPNVESIPKVDWQLYIEKLANLIRTEQSPEKLLEARSMIYELLVHLIPPSILIM 302
>gi|321248728|ref|XP_003191220.1| subunit of DNA Replication factor C (RF-C); Rfc5p [Cryptococcus
gattii WM276]
gi|317457687|gb|ADV19433.1| Subunit of DNA Replication factor C (RF-C), putative; Rfc5p
[Cryptococcus gattii WM276]
Length = 356
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H + LK L G+ PHIL G SG+GK+ M L E+YG
Sbjct: 3 LWVDKYRPRTLDDLHYHDGLSSRLKSLAASGDFPHILFYGPSGAGKKTRIMCTLRELYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ +V V V S +H+EL ++ + + ++KEI +
Sbjct: 63 GVEKLRIDQRVFVTPSNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + +++I E D Q ++ M+ Y + +LILC II +++ C ++
Sbjct: 123 LNAKQRFKVVIINEADALTRDAQAALRRTMEKYMANMRLILCANSTSKIIAPIRSRCLLM 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ VL +A+KE F L I ++ NLRKA++ EA + +
Sbjct: 183 RVAAPTDDEMTTVLNYVAKKERFTLPSPANNAILETSQGNLRKALLVFEAMRMQRPDLSG 242
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D + WE ++A IL + + +RL+ +R KI +LL+ + P +++
Sbjct: 243 DIEVAKPDWETYCGKVADAILQEQTAQRLLEIRAKIYELLSHCIPPTVVM 292
>gi|326469753|gb|EGD93762.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
112818]
Length = 352
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 148/299 (49%), Gaps = 21/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H+ + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K +V + SS +H+EL ++ + + L+KEI A T
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEI----AQT 118
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V + ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 119 QQVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSR 178
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
+++V P +I +VL +KE ++ ++A ++ +NLR+A++ EA A N
Sbjct: 179 TLLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNE 238
Query: 571 PFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+D+ PI P WE ++ +A EI+A+ SP R++ VR + LL + P IL + +
Sbjct: 239 KVSDNTPIPPPDWEALISVVADEIMAERSPARILQVRARPYDLLTHCIPPTTILKTLAF 297
>gi|426199470|gb|EKV49395.1| hypothetical protein AGABI2DRAFT_191437 [Agaricus bisporus var.
bisporus H97]
Length = 355
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 143/296 (48%), Gaps = 26/296 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L H ++ LK L G+ PHIL G SG+GK+ L EIYG
Sbjct: 3 LWVDKYRPKNLQELHYHHALSKRLKSLA-SGDFPHILFYGPSGAGKKTRIACTLREIYGP 61
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K ++ + + S +H+E+ + N + ++EI +A T
Sbjct: 62 GAEKLKIDQRIFLSPSRRKLEINLTQSNYHIEITPSEAGNYDRVV---IQEILKEIAQTQ 118
Query: 458 EVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V NA ++VI E D + Q ++ M+ Y + ++ILC +I +K+ C
Sbjct: 119 QVDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 178
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA---- 567
+++V P E+ VL IA +E+F L A +I + N+RKA++ +EA K
Sbjct: 179 LLVRVAAPNADEMAAVLNSIAGRENFQLPEEAARQIIEDSNGNMRKALLVMEALKMQSPN 238
Query: 568 LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
L P +P WE ++A I+++ SP R++ VR K +LL+ + P +IL
Sbjct: 239 LTGPLTIAKP---DWETYCHKVADLIVSEQSPSRIMEVRNKFYELLSHCIPPTVIL 291
>gi|409078462|gb|EKM78825.1| hypothetical protein AGABI1DRAFT_114403 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 355
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 143/296 (48%), Gaps = 26/296 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L H ++ LK L G+ PHIL G SG+GK+ L EIYG
Sbjct: 3 LWVDKYRPKNLQELHYHHALSKRLKSLA-SGDFPHILFYGPSGAGKKTRIACTLREIYGP 61
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K ++ + + S +H+E+ + N + ++EI +A T
Sbjct: 62 GAEKLKIDQRIFLSPSRRKLEINLTQSNYHIEITPSEAGNYDRVV---IQEILKEIAQTQ 118
Query: 458 EVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V NA ++VI E D + Q ++ M+ Y + ++ILC +I +K+ C
Sbjct: 119 QVDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRC 178
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA---- 567
+++V P E+ VL +A +E+F L A +I + N+RKA++ +EA K
Sbjct: 179 LLVRVAAPNADEMAAVLNSVAGRENFQLPEEAARQIVEDSNGNMRKALLVMEALKMQSPN 238
Query: 568 LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
L P +P WE ++A I+++ SP R++ VR K +LL+ + P +IL
Sbjct: 239 LTGPLTIAKP---DWETYCHKVADLIVSEQSPSRIMEVRNKFYELLSHCIPPTVIL 291
>gi|402224926|gb|EJU04988.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 359
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 149/292 (51%), Gaps = 16/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H ++ L+ L G+ PH+L G SG+GK+ +L E++G
Sbjct: 3 LWVDKYRPRTLDDLDYHSELSERLRSLASSGDFPHMLFYGPSGAGKKTRVACVLRELFGA 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K +V V V S +H+EL ++ + + ++KEI +
Sbjct: 63 GAEKLKIEQRVFLTPSKRKLDVNVVMSNYHLELTPSDVGIYDRQVIQDILKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D+ + Q ++ M+ Y + ++IL + +I +K+ C ++
Sbjct: 123 LSAKQRFKVVVINEADQLSRDAQAALRRTMEKYMANLRIILVANNTSKLIAPIKSRCLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ VL +A+KE DL A+KI +A NLR+A++ LEA K + +P +
Sbjct: 183 RVAAPTLEEMETVLGYVAKKERVDLPPEVASKIGAEAVGNLRRALLVLEALK-MQHPDLN 241
Query: 575 DQPIPLG---WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ + + WE ++A I+ S +R++ VR K+ +L++ + P LI+
Sbjct: 242 AEKLEIAKPDWETYCAKVADLIVEQQSAQRILDVRSKLYELISHCIPPSLII 293
>gi|255946333|ref|XP_002563934.1| Pc20g14580 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588669|emb|CAP86787.1| Pc20g14580 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 13/295 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK +P +L+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKLRPRTLDALSYHPELSDRLRSLAHSGDFPHLLVYGPSGAGKKTRVIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ ++ + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPADVGTYDRVVVQELLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I L +KE + S +IA ++ +NLR+A++ E+ A N D
Sbjct: 183 RVAAPTESDICSALHLAGKKEGWTESEVLNKRIAKESGRNLRRALLMFESIYAQNEKVTD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
PI P WE ++ A EILA+ SP RL+ VR ++ LL + P IL + +
Sbjct: 243 KTPIPPPDWEALVTLTADEILAERSPARLLHVRARLYDLLTHCIPPTTILKTLTF 297
>gi|190348623|gb|EDK41109.2| hypothetical protein PGUG_05207 [Meyerozyma guilliermondii ATCC
6260]
Length = 362
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 143/310 (46%), Gaps = 28/310 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL+ H L+ L G+ PH+L+ G SGSGK+ + LHE+YG
Sbjct: 3 LWVDKYRPRSLDQLSFHDSITNNLRALASTGDFPHLLVYGPSGSGKKTRIYSTLHELYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ K + V SS HH+E+ ++ N + + L+K++ + +
Sbjct: 63 SVEKLKIDVKKFTTTSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTEQVD 122
Query: 455 ITPEVSN-----AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
T + S+ ++VI E D + Q ++ M+ Y+ + +LI+ C II +K+
Sbjct: 123 FTAKASSPRHKFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLIMVCNTTSSIISPIKS 182
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKE-------DFDLSMTFAAKIATKAKQNLRKAIMAL 562
++++ P T EI VL IA KE D + F ++AT +N+R+A++
Sbjct: 183 RTLLVRIPAPTTAEIASVLTTIADKETVKFNPGDEETRQKFFEQLATNCNRNMRRALLCF 242
Query: 563 EACKALNYPFADDQP----IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVH 618
E + P + L WE ++ LA I + L VR + +LL+ +
Sbjct: 243 ETISMQTETININNPKQAIVDLDWEVIISNLAQSIYTQRTVANLAKVRVVLYELLSHCIP 302
Query: 619 PKLILLVMHY 628
P +IL + +
Sbjct: 303 PAVILKTLLF 312
>gi|157877944|ref|XP_001687264.1| putative replication factor C, subunit 5 [Leishmania major strain
Friedlin]
gi|68130339|emb|CAJ09651.1| putative replication factor C, subunit 5 [Leishmania major strain
Friedlin]
Length = 351
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 152/296 (51%), Gaps = 19/296 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P +L + ++L L + PH+L G SGSGK+ AMA+LHEIYG
Sbjct: 2 LWVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 407 ACWN---EKWPTQV----LVPVA--SSAHHVELNVNLQANAKYAL-MGLVKEIRDNLAIT 456
+ ++ E QV +V +A SS HH+++N + N A+ M +++EI + +
Sbjct: 62 SVFSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLH 121
Query: 457 PEVSN------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
N ++V+ EVDK + Q+ ++ M+ Y ++C+L L C +I +++
Sbjct: 122 STSGNRKNVPYKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKALN 569
C I+V + + ++ E L S+ F +A ++ NLR+ ++ LEA
Sbjct: 182 CLGIRVASHSKDNLKLAVQRVCEGEGRPLPSVAFLNSLALRSDGNLRRGLLMLEASALAK 241
Query: 570 YPFA-DDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
++ + IP W+ L E++ +I+A+ +PKRL VR K LLA+ + + IL
Sbjct: 242 VDWSGNGAAIPQADWKLFLDEISHDIVAEQTPKRLHEVRLKFYDLLAQCISGETIL 297
>gi|339899439|ref|XP_003392854.1| putative replication factor C, subunit 5 [Leishmania infantum
JPCM5]
gi|398025304|ref|XP_003865813.1| replication factor C, subunit 5, putative [Leishmania donovani]
gi|321398829|emb|CBZ09063.1| putative replication factor C, subunit 5 [Leishmania infantum
JPCM5]
gi|322504050|emb|CBZ39137.1| replication factor C, subunit 5, putative [Leishmania donovani]
Length = 351
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 151/296 (51%), Gaps = 19/296 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P +L + +L L + PH+L G SGSGK+ AMA+LHEIYG
Sbjct: 2 LWVDRYRPKTLKDVELYPELKGVLTRLSKAQDVPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 407 ACWN---EKWPTQV----LVPVA--SSAHHVELNVNLQANAKYAL-MGLVKEIRDNLAIT 456
+ ++ E QV +V +A SS HH+++N + N A+ M +++EI + +
Sbjct: 62 SVYSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLH 121
Query: 457 PEVSN------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
SN ++V+ EVDK + Q+ ++ M+ Y ++C+L L C +I +++
Sbjct: 122 TTASNRKNVPYKVVVLNEVDKMSRSAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKALN 569
C I+V + + ++ E L S F +A ++ NLR+ ++ LEA
Sbjct: 182 CLGIRVASHSKDNLKLAVQRVCEGEGRPLPSAAFLNSLALRSGGNLRRGLLMLEASAMAK 241
Query: 570 YPFA-DDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
++ + IP W+ L E++ +I+A+ +PK+L VR K LLA+ + + IL
Sbjct: 242 VDWSGNGAAIPQADWKLFLDEISHDIVAEQTPKKLHEVRLKFYDLLAQCISGETIL 297
>gi|58263060|ref|XP_568940.1| DNA clamp loader [Cryptococcus neoformans var. neoformans JEC21]
gi|134107896|ref|XP_777330.1| hypothetical protein CNBB1320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260020|gb|EAL22683.1| hypothetical protein CNBB1320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223590|gb|AAW41633.1| DNA clamp loader, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 356
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 140/290 (48%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H + LK L G+ PHIL G SG+GK+ M L E+YG
Sbjct: 3 LWVDKYRPRTLDDLHYHDGLSSRLKSLAASGDFPHILFYGPSGAGKKTRIMCTLRELYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ +V V V S +H+EL ++ + + ++KEI +
Sbjct: 63 GVEKLRIDQRVFVTPSNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + +++I E D Q ++ M+ Y + +LILC II +++ C ++
Sbjct: 123 LNAKQRFKVVIINEADALTRDAQAALRRTMEKYMTNMRLILCANSTSKIIAPIRSRCLLM 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ VL +A+KE F L + I ++ NLRKA++ EA + + +
Sbjct: 183 RVAAPTDDEMSTVLNYVAKKERFMLPSSANNAILETSQGNLRKALLVFEAMRMQHPDLSG 242
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D + WE ++A IL + + ++L+ +R KI +LL+ + P +++
Sbjct: 243 DVEVAKPDWETYCGKVADAILQEQTAQKLLDIRAKIYELLSHCIPPTVVM 292
>gi|401421084|ref|XP_003875031.1| putative replication factor C, subunit 5 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491267|emb|CBZ26533.1| putative replication factor C, subunit 5 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 351
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 152/296 (51%), Gaps = 19/296 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P +L + ++L L + PH+L G SGSGK+ AMA+LHEIYG
Sbjct: 2 LWVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 407 ACWN---EKWPTQV----LVPVA--SSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
+ ++ E QV +V +A SS HH+++N + N + +M +++EI + +
Sbjct: 62 SVYSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQTVPLH 121
Query: 457 PEVSN------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+N ++V+ EVDK + Q+ ++ M+ Y ++C+L L C +I +++
Sbjct: 122 TTANNRKNVPYKVVVLNEVDKMSRSAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKALN 569
C I+V + + ++ E L S F +A ++ NLR+ ++ LEA
Sbjct: 182 CLGIRVASHSKDNLKLAVQRVCEGEGRPLPSAAFLNSLALRSDGNLRRGLLMLEASAMAK 241
Query: 570 YPFADD-QPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
++ + IP W+ L E++ +I+A+ +PKRL VR K LL++ + + IL
Sbjct: 242 VDWSSNGAAIPQADWKLFLDEISHDIVAEQTPKRLHEVRLKFYDLLSQCISGETIL 297
>gi|268552547|ref|XP_002634256.1| C. briggsae CBR-RFC-3 protein [Caenorhabditis briggsae]
Length = 354
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 146/295 (49%), Gaps = 20/295 (6%)
Query: 347 FWADKHQPSSL---NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
W DK++P L +G H +A+ LK L D PH+L G SG+GK+ LL E+
Sbjct: 3 LWVDKYRPKELLGKDGVDYHLEQAKHLKFLSADCM-PHLLFCGPSGAGKKTRIKCLLREL 61
Query: 404 YGDACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
YG + + + SS +HVE+ ++ + + LVKE+
Sbjct: 62 YGVGVDKTQLIMKAFTTPSNRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDLVKEMAQTS 121
Query: 454 AI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + + S ++V+ E D Q+ ++ M+ Y ++CK++LCCE IIE +++ C
Sbjct: 122 QIEASSQKSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLCCESLSRIIEPLQSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN-- 569
+I V P E+ +VL ++ +KE+ ++ + KI K++ NLR+AI+ EA K N
Sbjct: 182 IIINVPAPTDVEVEKVLRKVIQKENLNMPDSVLQKIVEKSEGNLRRAILMTEAIKMENEG 241
Query: 570 -YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
P P+P WE + E A IL + + VR ++ ++++ + P +I
Sbjct: 242 GIPANAQIPVP-EWEVYIQETARLILQKQTNDMALKVRERLYEVISRLIPPHVIF 295
>gi|330906014|ref|XP_003295321.1| hypothetical protein PTT_00410 [Pyrenophora teres f. teres 0-1]
gi|311333479|gb|EFQ96578.1| hypothetical protein PTT_00410 [Pyrenophora teres f. teres 0-1]
Length = 356
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 141/290 (48%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + +S +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI VL ++ +KE + + +IA + +NLRKA++ EA A N D
Sbjct: 183 RVAAPTESEICSVLSKVGKKEGWKDVESLNQRIAKDSGRNLRKALLMFEAVHAQNEKITD 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
I P WE ++ ++A +I+ + SP+RL+ VR + LL+ + I+
Sbjct: 243 QTHIPPPDWEALIEQIARQIVEERSPQRLLQVRASLYDLLSHCIDSTTII 292
>gi|392564235|gb|EIW57413.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 358
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 141/295 (47%), Gaps = 22/295 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK +P SL+ H + LK L G+ PH+L G SG+GK+ L E++G
Sbjct: 3 LWVDKWRPRSLDDLHYHHGLSDRLKALAASGDFPHMLFYGPSGAGKKTRIAGTLLELFGK 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V V + S +H+E + N + +++I +A T
Sbjct: 63 GAEKIKIDQRVFTTPTKRKLDVNIVQSNYHIEFTPSEVGNYDRLI---IQDILKEIAQTQ 119
Query: 458 EVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V NA ++VI+E D Q ++ M+ Y + +LILC +I +++ C
Sbjct: 120 QVDLNAKQKFKVVVIHEADALTRDAQAALRRTMEKYMSNMRLILCANSTSKLIAPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P T E+ VL +A+ E F + + IA A NLRKAI+ LEA K N P
Sbjct: 180 LLMRVAAPSTEEMQTVLDFVAKHEGFAIPEDTVSLIAADAGGNLRKAILVLEALKMQN-P 238
Query: 572 FADDQPIPLG---WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ + WE ++A I+ + SP R++ VR K+ +LL+ + P ++L
Sbjct: 239 DLSVSALSIAKPDWETYCHKVADMIVQEQSPARVMEVRAKLYELLSHCIPPTIVL 293
>gi|392576874|gb|EIW70004.1| hypothetical protein TREMEDRAFT_30209 [Tremella mesenterica DSM
1558]
Length = 341
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H + L+ L G+ PHIL G SG+GK+ M L E+YG
Sbjct: 3 LWVDKYRPRTLDDLHYHTELSSRLRSLSASGDFPHILFYGPSGAGKKTRIMCTLRELYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
+ +V V V S +H+EL ++ + + ++KEI +
Sbjct: 63 GVEKLRIDQRVFVTPSGRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++++ E D Q ++ M+ Y + +LILC II +++ C ++
Sbjct: 123 LNAKQRFKVVIVNEADALTRDAQAALRRTMEKYMTNMRLILCATSTSKIIAPIRSRCLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ +VL +A+KE F L I + + NLRKA++ EA +
Sbjct: 183 RVAAPDNGEMTKVLQHVAKKERFHLPDPACQSITSASGGNLRKALLVFEAMRMQRPDLQG 242
Query: 575 DQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D + WE ++A IL + + +RL+ VRGK+ +LL+ + P ++L
Sbjct: 243 DIEVAKPDWETYCAKVADSILQEQTAQRLLDVRGKLYELLSHCIPPTVVL 292
>gi|154346764|ref|XP_001569319.1| putative replication factor C, subunit 5 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066661|emb|CAM44460.1| putative replication factor C, subunit 5 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 351
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 153/299 (51%), Gaps = 25/299 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P +L + ++L L + PH+L G SGSGK+ AMA+LHEIYG
Sbjct: 2 LWVDRYRPKTLKDVELYPELREVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 407 ACWN---EKWPTQV----LVPVA--SSAHHVELNVNLQANAKY----ALMGLVKEIRDNL 453
+ ++ E QV +V +A SS HH+++N ++A Y +M +++EI +
Sbjct: 62 SVYSVRLEHKSVQVSDSKVVDIATLSSPHHIDIN---PSDAGYYDRSIVMQMIREIAQTV 118
Query: 454 AITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
+ V++ ++V+ EVDK + Q+ ++ M+ Y +C+L L C +I +
Sbjct: 119 PLHTTVNSGKSVPYKVVVLNEVDKMSRSAQHALRRTMEKYMSTCRLFLLCNSTSRLISPL 178
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACK 566
++ C I+V + + ++ E L S F +A ++ NLR+ ++ LEA
Sbjct: 179 RSRCLGIRVALHSKENLKLAVQRVCEGEGRPLPSEAFLHALALRSDGNLRRGLLMLEASA 238
Query: 567 ALNYPFA-DDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
++ + IP W+ L E++ +I+A+ +PKRL VR K LLA+ + + IL
Sbjct: 239 MTRVDWSGNGATIPQADWKLFLDEISHDIVAEQTPKRLHEVRLKFYDLLAQCISGETIL 297
>gi|409048764|gb|EKM58242.1| hypothetical protein PHACADRAFT_171504 [Phanerochaete carnosa
HHB-10118-sp]
Length = 357
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 20/294 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D ++P SL+ H + L+ L G+ PH+L G SG+GK+ L E++G
Sbjct: 3 LWVDCYRPKSLDELHYHESLSARLRSLAASGDFPHMLFYGPSGAGKKTRIACTLKELFGK 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V V V S H+E+ + N + + L+KEI +
Sbjct: 63 GVEKLKIDQRVFLTPSRRKLDVNVVQSNFHLEITPSEVGNYDRVVIQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I ++VI E D Q ++ M+ Y + ++ILC +I +K+ C ++
Sbjct: 123 INARHRFKVVVINEADSLTRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIKSRCLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLS-MTFAAKIATKAKQNLRKAIMALEACK----ALN 569
+V P E++ V+ +A +++F + + +IA A+ NLRKA++ EA K +LN
Sbjct: 183 RVAAPTEEEMVTVMKHVASRQNFRIEDESVVCEIARDAEGNLRKALLVFEALKMQTGSLN 242
Query: 570 YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
P +P WE I++ I + SP+R++ VR K+ +LL+ + P +IL
Sbjct: 243 GPITIAKP---DWETYCIKVGDMITQEQSPQRVMDVRTKLYELLSHCIPPTVIL 293
>gi|242062786|ref|XP_002452682.1| hypothetical protein SORBIDRAFT_04g030580 [Sorghum bicolor]
gi|241932513|gb|EES05658.1| hypothetical protein SORBIDRAFT_04g030580 [Sorghum bicolor]
Length = 140
Score = 114 bits (286), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/73 (73%), Positives = 62/73 (84%)
Query: 551 AKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQ 610
A++NLR+AI+ALEACK NYPF D Q IPLGWE+VL ELAAEIL DP+PKRL + RGK+Q
Sbjct: 2 ARKNLREAILALEACKGNNYPFIDGQAIPLGWEQVLEELAAEILDDPAPKRLFLARGKLQ 61
Query: 611 KLLAEFVHPKLIL 623
KLL EFV PKLIL
Sbjct: 62 KLLVEFVPPKLIL 74
>gi|146412432|ref|XP_001482187.1| hypothetical protein PGUG_05207 [Meyerozyma guilliermondii ATCC
6260]
Length = 362
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 143/310 (46%), Gaps = 28/310 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL+ H L+ L G+ PH+L+ G SGSGK+ + LHE+YG
Sbjct: 3 LWVDKYRPRSLDQLSFHDSITNNLRALASTGDFPHLLVYGPSGSGKKTRIYSTLHELYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K + V SS HH+E+ ++ N + + L+K++ + +
Sbjct: 63 LVEKLKIDVKKFTTTSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTEQVD 122
Query: 455 ITPEVSN-----AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
T + S+ ++VI E D + Q ++ M+ Y+ + +LI+ C II +K+
Sbjct: 123 FTAKASSPRHKFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLIMVCNTTSSIISPIKS 182
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKE-------DFDLSMTFAAKIATKAKQNLRKAIMAL 562
++++ P T EI VL IA KE D + F ++AT +N+R+A++
Sbjct: 183 RTLLVRIPAPTTAEIALVLTTIADKETVKFNPGDEETRQKFFEQLATNCNRNMRRALLCF 242
Query: 563 EACKALNYPFADDQP----IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVH 618
E + P + L WE +++ LA I + L VR + +LL+ +
Sbjct: 243 ETILMQTETININNPKQAIVDLDWEVIILNLAQSIYTQRTVANLAKVRVVLYELLSHCIP 302
Query: 619 PKLILLVMHY 628
P +IL + +
Sbjct: 303 PAVILKTLLF 312
>gi|17541990|ref|NP_502517.1| Protein RFC-3 [Caenorhabditis elegans]
gi|3874848|emb|CAA94339.1| Protein RFC-3 [Caenorhabditis elegans]
Length = 354
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 143/294 (48%), Gaps = 18/294 (6%)
Query: 347 FWADKHQPSSL---NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
W DK++P L +G H +A LK L D PH+L G SG+GK+ LL E+
Sbjct: 3 LWVDKYRPKDLLGKDGVDYHIEQANHLKFLSADCM-PHLLFCGPSGAGKKTRIKCLLREL 61
Query: 404 YGDACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
YG + + + SS +H+E+ ++ + + LVKE+
Sbjct: 62 YGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTS 121
Query: 454 AI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I T + S ++V+ E D Q+ ++ M+ Y ++CK++L CE IIE +++ C
Sbjct: 122 QIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRC 181
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+I V P ++ +VL ++ +E F L KI K++ NLR+AI+ EA + N
Sbjct: 182 IIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMENES 241
Query: 572 -FADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
A+ IP+ WE + E A IL S L+ VR ++ +LL+ + P +I
Sbjct: 242 GVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIF 295
>gi|347828635|emb|CCD44332.1| similar to replication factor C (activator 1) 3 [Botryotinia
fuckeliana]
Length = 354
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 145/292 (49%), Gaps = 20/292 (6%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ + L E+YG A
Sbjct: 5 VDKHRPRSLDQLTYHDDLSNRLRSLAQSGDFPHLLLYGPSGAGKKTRIVCTLKELYGPAV 64
Query: 409 WNEKWPTQVL----------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE 458
K ++V + SS +H+E+ + N + + E+ +A T +
Sbjct: 65 EKIKIDSRVFALATSSRKLEFNIVSSLYHLEITPSDVGNYDRVV---ISELLKEVAQTQQ 121
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D + Q ++ M+ Y+ + +LIL II +++
Sbjct: 122 VDQSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSGNVRLILVANSTSGIIGPIRSRTL 181
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P +I++VL ++E + +S F ++A ++ +NLR+A++ EA A N
Sbjct: 182 LVRVGAPTEGDIVKVLETSGKREGWGVSKGFLERVAKESGRNLRRALLMYEAAHAQNEVI 241
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
A++ PI P WE +L +A + + +P +++ +R ++ LL + IL
Sbjct: 242 AENTPIPPPDWEALLSTIAHSMTVEHTPAQILKIRAQLYDLLTHCIPATTIL 293
>gi|226286726|gb|EEH42239.1| replication factor C subunit 5 [Paracoccidioides brasiliensis Pb18]
Length = 354
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 134/267 (50%), Gaps = 19/267 (7%)
Query: 353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEK 412
+P SL+ HR + LK L G+ PH+L+ G SG+GK+ +A L E++G K
Sbjct: 15 RPRSLDALTYHRELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGTGVEKIK 74
Query: 413 WPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA- 462
+V + SS +H+E+ + N + V+E+ +A T +V +
Sbjct: 75 IDARVFQTSTNRKLEFNIVSSVYHLEITPSDVGNYDRVV---VQELLKEVAQTQQVDLSA 131
Query: 463 -----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVD 517
++VI E D Q ++ M+ Y+ + ++IL +II +++ +++V
Sbjct: 132 KQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIIAPIRSRTLLVRVA 191
Query: 518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577
P EI +VL +KE++ + +IA ++ +NLR+A++ EA A N DD P
Sbjct: 192 APTEAEICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEKVTDDTP 251
Query: 578 I-PLGWEEVLIELAAEILADPSPKRLV 603
I P WE ++ +A EI+A+ SP R++
Sbjct: 252 IPPPDWEALISVIADEIMAERSPARIL 278
>gi|395332196|gb|EJF64575.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 360
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 140/297 (47%), Gaps = 26/297 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P SL+ H + LK L G+ PH+L G +G+GK+ L E++G
Sbjct: 3 LWVDKHRPRSLDQLHYHHALSARLKALAASGDFPHMLFYGPTGAGKKTRIAGTLLELFGK 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V V + S H+E+ + N + ++EI +A T
Sbjct: 63 GVEKLKIDQRVFLTPTKRKLDVNIVQSNFHIEITPSEVGNYDRVV---IQEILKEIAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V + ++VI+E D Q ++ M+ Y + +LILC +I +++ C
Sbjct: 120 QVDLSAKQKFKLVVIHEADSLTRDAQAALRRTMEKYMTNMRLILCANSTSKLIAPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P E+ VL + ++E F + A IA A N+RKA++ LEA K N
Sbjct: 180 LLMRVAAPSEEEMRAVLDYVGKREGFAIPDDTARLIAQDANGNVRKALLVLEALKMQNTD 239
Query: 572 FADD-----QPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ +P WE ++A I+ + SP R++ VR K+ +LL+ + P +++
Sbjct: 240 LSSSALSIAKP---DWETYCHKVADMIIQEQSPARVMEVRAKLYELLSHCIPPSVVI 293
>gi|156044344|ref|XP_001588728.1| hypothetical protein SS1G_10275 [Sclerotinia sclerotiorum 1980]
gi|154694664|gb|EDN94402.1| hypothetical protein SS1G_10275 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 354
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 144/292 (49%), Gaps = 20/292 (6%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L+ L G+ PH+L+ G SG+GK+ + L E+YG +
Sbjct: 5 VDKHRPRSLDQLTYHDDLSDRLRALAQSGDFPHLLLYGPSGAGKKTRIVCTLKELYGGSV 64
Query: 409 WNEKWPTQVL----------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE 458
K ++V + SS +H+E+ + N + + E+ +A T +
Sbjct: 65 EKIKIDSRVFQLSSSSRKLEFNIVSSLYHLEITPSDVGNYDRVV---ISELLKEVAQTQQ 121
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V + ++VI E D + Q ++ M+ Y+ + +LIL II +++
Sbjct: 122 VDQSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSGNVRLILVANSTSGIIGPIRSRTL 181
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P +I++VL + ++E + +S F ++A ++ +NLR+A++ EA A N
Sbjct: 182 LVRVGAPTEGDIVKVLEKSGKREGWGVSRGFLERVAKESGRNLRRALLMYEAAHAQNETI 241
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D PI P WE +L +A + + +P +++ +R ++ LL + IL
Sbjct: 242 NDTTPIPPPDWEALLSTIAHSMTIEHTPAQILKIRAQLYDLLTHCIPATTIL 293
>gi|393221474|gb|EJD06959.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 355
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 31/299 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H+ + L+ L G+ PH+L G SG+GK+ L +++G
Sbjct: 3 LWVDKYRPRTLDDLHYHQGLSARLRSLAASGDFPHMLFYGPSGAGKKTRIACTLRQLFGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLA 454
K +V V + S H+E+ +V + +++EI +A
Sbjct: 63 GVEKLKIDQRVFLTPSKRKLDVNIVQSNFHIEITPSDVGIYDRV------VIQEILKEIA 116
Query: 455 ITPEVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
T +V NA +++I E D + Q ++ M+ Y + ++ILC +I ++
Sbjct: 117 QTQQVDLNAKQRFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIR 176
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA- 567
+ C +++V P E+ L +A++E FDL A +IA A NLRKA++ LEA K
Sbjct: 177 SRCLLMRVAAPTEEEVQTCLRYVAKREKFDLPPDAACEIAEDAGGNLRKAVLVLEALKMQ 236
Query: 568 ---LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
L+ P +P WE ++A I+ + +P R++ VR K +LL+ + ++L
Sbjct: 237 SPDLSGPLTIAKP---DWETYCHKVADLIVQEQTPARVMEVRAKFYELLSHCIPATVVL 292
>gi|336383955|gb|EGO25103.1| hypothetical protein SERLADRAFT_368530 [Serpula lacrymans var.
lacrymans S7.9]
Length = 356
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK +P +L+ H + LK L G+ PH+L G SG+GK+ L +++G
Sbjct: 3 LWVDKFRPKTLDDLHYHEGLSARLKSLAASGDFPHMLFYGPSGAGKKTRISCTLRQLFGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + + S +H+E+ + N + + L+KEI +
Sbjct: 63 GVERLKIDQRVFLSPSKRKLEINIVQSNYHIEITPSEAGNYDRVVIQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D + Q ++ M+ Y + ++ILC +I +K+ C ++
Sbjct: 123 LNAKQRFKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCLLM 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA----LNY 570
+V P E+ VL +A+K FDL + +I + NLRKA++ EA K L+
Sbjct: 183 RVAAPTPEEMQTVLHHVAKKLKFDLPDDASKQIVDDSGGNLRKALLVFEALKMQSPDLSG 242
Query: 571 PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
A +P WE ++A I+ + SP R++ VR K +LL+ + P ++L
Sbjct: 243 SLAIAKP---DWETYCHKVADLIVQEQSPARVMEVRAKFYELLSHCIPPTIVL 292
>gi|313226190|emb|CBY21333.1| unnamed protein product [Oikopleura dioica]
Length = 357
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 141/289 (48%), Gaps = 14/289 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P + + +A+ L+ +V +G+ PH+L G +G+GK+ +L E+YG
Sbjct: 3 LWCDRYRPKTFKELDYNLKQAKQLQRMVKEGDFPHLLFWGTNGAGKKTRINCILRELYGS 62
Query: 407 AC---------WNEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ ++ + +S +H+E+ + + + + LVK I ++
Sbjct: 63 GVDKLRLERHEYTTASNKKLELHACASNYHIEICPADAGIHDRIVIQELVKGIAGGQSLN 122
Query: 457 PEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ +IVI E ++ + Q+ ++ M+ Y +C++IL E +I ++++ C I
Sbjct: 123 NDKQKQFKVIVITEANRLTKDAQHGLRRTMEKYMSTCRMILLSESTSKLIPALRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P T E+ + L+Q E F+++ +I + +NLRKA++ E CK N D
Sbjct: 183 RVQAPSTEEVKQCLMQACEIERFEMTDEQINRIVKLSDRNLRKALLLGEVCKVKNITNGD 242
Query: 575 DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
P WEE L + IL + SP +++ VR + +L+ + +I
Sbjct: 243 --PPAYDWEEFLDKTGKMILRNQSPSQILQVRTNLYELIVRLIPANIIF 289
>gi|119190365|ref|XP_001245789.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 357
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 146/300 (48%), Gaps = 22/300 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
D+ +P +L+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLAIT 456
K +V + +S +H+E+ ++ + + L+KEI + ++
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQQVDLS 124
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ ++VI E D Q ++ M+ Y+ + +LIL +II +++ +++V
Sbjct: 125 AKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRV 184
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN------- 569
P EI +VL ++E + + +IA ++ +NLR+A++ EA A
Sbjct: 185 AAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALLMFEAVYAQKQVSWHSR 244
Query: 570 YPFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
YP DD + P WE ++ +A EI+A+ SP R++ VR ++ LL + P IL + +
Sbjct: 245 YP--DDTVVPPPDWEALISLIADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTF 302
>gi|336371191|gb|EGN99530.1| hypothetical protein SERLA73DRAFT_179588 [Serpula lacrymans var.
lacrymans S7.3]
Length = 368
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK +P +L+ H + LK L G+ PH+L G SG+GK+ L +++G
Sbjct: 3 LWVDKFRPKTLDDLHYHEGLSARLKSLAASGDFPHMLFYGPSGAGKKTRISCTLRQLFGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + + S +H+E+ + N + + L+KEI +
Sbjct: 63 GVERLKIDQRVFLSPSKRKLEINIVQSNYHIEITPSEAGNYDRVVIQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D + Q ++ M+ Y + ++ILC +I +K+ C ++
Sbjct: 123 LNAKQRFKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCLLM 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA----LNY 570
+V P E+ VL +A+K FDL + +I + NLRKA++ EA K L+
Sbjct: 183 RVAAPTPEEMQTVLHHVAKKLKFDLPDDASKQIVDDSGGNLRKALLVFEALKMQSPDLSG 242
Query: 571 PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
A +P WE ++A I+ + SP R++ VR K +LL+ + P ++L
Sbjct: 243 SLAIAKP---DWETYCHKVADLIVQEQSPARVMEVRAKFYELLSHCIPPTIVL 292
>gi|425765328|gb|EKV04028.1| DNA replication factor C subunit Rfc5, putative [Penicillium
digitatum Pd1]
gi|425766809|gb|EKV05406.1| DNA replication factor C subunit Rfc5, putative [Penicillium
digitatum PHI26]
Length = 352
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 19/298 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK +P +L+ H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKLRPRNLDALSYHPELSDRLRSLARSGDFPHLLVYGPSGAGKKTRIIATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V + SS +H+E+ N + V+E+ +A T
Sbjct: 63 GVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPADVGNYDRVV---VQELLKEVAQTQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V ++VI E D + Q ++ M+ Y+ + +LIL +II +++
Sbjct: 120 QVDLGAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRT 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+++V P ++I L +KE + S +IA ++ +NLR+A++ E+ A N
Sbjct: 180 LLVRVAAPTENDICSALHLAGKKEGWTESEVLNKRIAKESGRNLRRALLMFESIYAQNEK 239
Query: 572 FADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D I P WE ++ A EILA+ SP RL+ VR ++ LL + P IL + +
Sbjct: 240 VTDKTMIPPPDWEALVALTADEILAERSPARLLHVRARLYDLLTHCIPPTTILKTLTF 297
>gi|401881379|gb|EJT45679.1| DNA clamp loader [Trichosporon asahii var. asahii CBS 2479]
Length = 325
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 133/274 (48%), Gaps = 20/274 (7%)
Query: 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP-- 420
H ++ LK L G+ PHIL G SG+GK+ MA L E+YG K +V V
Sbjct: 4 HSELSERLKSLASSGDFPHILFYGPSGAGKKTRIMATLRELYGPGVEKLKIDQRVFVTPS 63
Query: 421 -------VASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLAITPEVSNAMIVIYEVD 470
V S +H+EL ++ + + ++KEI + + + ++VI E D
Sbjct: 64 NRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQVDLNAKQKFKVVVINEAD 123
Query: 471 KAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQ 530
+ Q ++ M+ Y + +LI+C II +++ C +++V P E
Sbjct: 124 SLSRDAQAALRRTMEKYMTNMRLIMCANSTSKIIAPIRSRCLLVRVAAPTDDE------- 176
Query: 531 IARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL-GWEEVLIEL 589
+A+KE F L + + I A NLRKA++ +EA + N D + WE ++
Sbjct: 177 VAKKERFTLPPSASDAIIEAADGNLRKALLVMEAMRMQNPDLNGDVDVAKPDWELYCAKI 236
Query: 590 AAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
A I+ + SP+RL+ +RGKI +LL+ + P ++L
Sbjct: 237 AESIMQEQSPQRLLDIRGKIYELLSHCIPPAVVL 270
>gi|406701717|gb|EKD04831.1| DNA clamp loader [Trichosporon asahii var. asahii CBS 8904]
Length = 325
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 28/278 (10%)
Query: 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP-- 420
H ++ LK L G+ PHIL G SG+GK+ MA L E+YG K +V V
Sbjct: 4 HSELSERLKSLASSGDFPHILFYGPSGAGKKTRIMATLRELYGPGVEKLKIDQRVFVTPS 63
Query: 421 -------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEVS-NA-----MIVI 466
V S +H+EL ++ + + ++KEI A T +V NA ++VI
Sbjct: 64 NRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEI----AQTQQVDFNAKQKFKVVVI 119
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D + Q ++ M+ Y + +LI+C II +++ C +++V P E
Sbjct: 120 NEADSLSRDAQAALRRTMEKYMTNMRLIMCANSTSKIIAPIRSRCLLVRVAAPTDDE--- 176
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL-GWEEV 585
+A+KE F L + + I A NLRKA++ +EA + N D + WE
Sbjct: 177 ----VAKKERFTLPPSASDAIIEAADGNLRKALLVMEAMRMQNPDLNGDVDVAKPDWELY 232
Query: 586 LIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
++A I+ + SP+RL+ +RGKI +LL+ + P ++L
Sbjct: 233 CAKIAESIMQEQSPQRLLDIRGKIYELLSHCIPPAVVL 270
>gi|414873275|tpg|DAA51832.1| TPA: hypothetical protein ZEAMMB73_747597 [Zea mays]
Length = 210
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 104/188 (55%), Gaps = 15/188 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H AQ L++ V + +CPH+L G SGSGK+ L +AL+ +++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFGA 61
Query: 407 AC-----WNEKWPT-------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
N+ W ++ + + SSAHHVE+ + +Y + ++KE+ N
Sbjct: 62 GAEKVKLENKTWKIDTGTRTFEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKNR 121
Query: 454 AITPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
I + A ++V+ EVDK + Q+ ++ M+ Y+ SC+LILCC + E+V++ C
Sbjct: 122 PIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRC 181
Query: 512 KVIKVDPP 519
++V+ P
Sbjct: 182 LNVRVNAP 189
>gi|340504015|gb|EGR30507.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 355
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 144/292 (49%), Gaps = 16/292 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P L+ H + LK L + PH+L G +G+GK+ M+ LHE+YG+
Sbjct: 4 LWVDQYRPKQLSQLDYHEKLTETLKSLAHSEDFPHLLFYGPNGAGKKTRIMSFLHEVYGN 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNV------------NLQANAKYALMGLVKEIRDNLA 454
K + ++S+ E+N+ + + + + L+KE+
Sbjct: 64 GVHKIKAEEREFKVSSTSSATCEINIIYSNYHIDVTPADAEVYDRVIIQKLIKEVASTHQ 123
Query: 455 ITP--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
+ P + S ++++ EVD+ Q ++ M+ Y + C+LILCCE+ +I+ +++ C
Sbjct: 124 LDPTSQKSFKVVILNEVDRLTLEAQASLRRTMEKYVNRCRLILCCENIGRVIQPLRSRCL 183
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDF-DLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+I+V P +I++V+ +I +E+ ++S K+ +NLR I+ L+ K LN
Sbjct: 184 LIRVPAPDEGDIIKVVKKIQNQENLPNISEEICRKMGDGFGRNLRDIILNLQMQK-LNKS 242
Query: 572 FADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D + W++ + ++A I SP +L +RG+ LL + +I+
Sbjct: 243 AFDGGSVKSEWKKEIGKIAQGIKDQQSPFKLKEIRGQFYDLLVNCIPGDVII 294
>gi|449540333|gb|EMD31326.1| hypothetical protein CERSUDRAFT_119887 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 137/296 (46%), Gaps = 25/296 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P +L+ H + L+ L G+ PH+L G SG+GK+ L E++G
Sbjct: 3 LWVDKHRPRTLDELHYHEGLSARLRALAASGDFPHMLFYGPSGAGKKTRIACTLRELFGK 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K +V V V S H+E+ + N + ++E+ +A T
Sbjct: 63 GVEKLKIDQRVFMTPSKRKLDVNVVQSNFHIEITPSEVGNYDRVV---IQELLKEIAQTQ 119
Query: 458 EVS-NA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
+V NA +++I E D Q ++ M+ Y + ++ILC +I +++ C
Sbjct: 120 QVDLNAKQRFKVVIINEADSLTRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA---- 567
+++V P E+ VL +A KE F L A I + N+RKA++ EA K
Sbjct: 180 LLMRVAAPSPAEMETVLHHVAAKERFHLPDEAAQAIVADSNGNMRKAVLVFEALKMQSTD 239
Query: 568 LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
L A +P WE ++A IL++ +P R++ VR K +LL+ + +IL
Sbjct: 240 LTGSLAIAKP---DWETYCAKVAELILSEQTPARVMEVRAKFYELLSHCIPASIIL 292
>gi|378734260|gb|EHY60719.1| replication factor C subunit 5 [Exophiala dermatitidis NIH/UT8656]
Length = 354
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK +P SL+ H+ + L L + PH+L G SG+GK+ +A L +YG
Sbjct: 3 LLVDKLRPRSLDALTYHKDLSDRLASLAASADFPHLLFYGPSGAGKKTRILATLRALYGS 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K +V + SS +H+E+ ++ + + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFTTSSNRKLEFNIVSSVYHLEITPSDVGSYDRVVIQELLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D + Q ++ M+ Y+ + +LIL II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSANVRLILVANSTAGIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI +VL + A+KE++ + +IA ++ +NLRKA++ EA A N +
Sbjct: 183 RVAAPTETEICDVLAKAAKKENWKVIPALNERIAKESNRNLRKALLMFEAVYAQNPEPNE 242
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PI P WE ++ ++A +I+ + +P ++ R K+ LL + ++L
Sbjct: 243 KTPISPPDWEILVEQIARDIVRERTPAMILATRAKLYDLLTHCIPASMVL 292
>gi|302657734|ref|XP_003020582.1| hypothetical protein TRV_05324 [Trichophyton verrucosum HKI 0517]
gi|291184430|gb|EFE39964.1| hypothetical protein TRV_05324 [Trichophyton verrucosum HKI 0517]
Length = 299
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 134/264 (50%), Gaps = 21/264 (7%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL---------VPVASSAHH 427
G+ PH+L+ G SG+GK+ +A L E+YG K +V + SS +H
Sbjct: 4 GDFPHLLVYGPSGAGKKTRIIATLKELYGPGVEKIKIDARVFQTSSNRKLEFNIVSSIYH 63
Query: 428 VELN-VNLQANAKYALMGLVKEIRDNLAITPEVSNA------MIVIYEVDKAAEHIQYLI 480
+EL ++ + + L+KEI A T +V + ++VI E D Q +
Sbjct: 64 LELTPSDVGTYDRVVVQELLKEI----AQTQQVDQSAKQRFKVVVINEADHLTRDAQAAL 119
Query: 481 KWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS 540
+ M+ Y+ + +LIL +II +++ +++V P +I +VL +KE ++
Sbjct: 120 RRTMEKYSPNMRLILLANTTANIIAPIRSRTLLVRVPAPSEDDICQVLKLAGKKEGWNDC 179
Query: 541 MTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI-PLGWEEVLIELAAEILADPSP 599
++A ++ +NLR+A++ EA A N +D+ PI P WE ++ +A EI+A+ SP
Sbjct: 180 PGLNKRLAKESGRNLRRALLMFEAVHAQNEKVSDNTPIPPPDWEALISVVADEIMAERSP 239
Query: 600 KRLVMVRGKIQKLLAEFVHPKLIL 623
R++ VR ++ LL + P IL
Sbjct: 240 ARILQVRARLYDLLTHCIPPTTIL 263
>gi|294656983|ref|XP_002770358.1| DEHA2D18722p [Debaryomyces hansenii CBS767]
gi|199431875|emb|CAR65712.1| DEHA2D18722p [Debaryomyces hansenii CBS767]
Length = 364
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 137/310 (44%), Gaps = 37/310 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H Q L L G+ PH+L+ G GSGK+ LHE++G
Sbjct: 3 LWVDKYRPKSLEQLSYHESITQNLAALASTGDFPHLLVYGPPGSGKKTRIYCTLHELFGP 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNV------------NLQANAKYALMGLVKEIRDNLA 454
EK V V SS +E NV ++ N + + L+K++
Sbjct: 63 QV--EKLKIDVKVFTTSSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDVASTEQ 120
Query: 455 ITPEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+ + SN +++I E D + Q ++ M+ Y+ + ++I+ C +II
Sbjct: 121 V--DFSNQSKSASKHRFKVVIINEADSLSRDAQAALRRTMEKYSANIRIIMICNTTSNII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS-------MTFAAKIATKAKQNLRK 557
+K+ ++++ P EI +L IA KE + F K++ + NLRK
Sbjct: 179 SPIKSRTLLVRIPAPSHKEISNILSNIADKESVKFNPSNESKKQEFFDKVSKNSDSNLRK 238
Query: 558 AIMALEACKALNYPFA----DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLL 613
A++ E + A D I L WE ++ LA I+++ + L VR +LL
Sbjct: 239 ALLCFETISMQSESIAINNTDSAMIALDWEVIIQNLAKSIISNRTVANLAKVRVVFYELL 298
Query: 614 AEFVHPKLIL 623
+ + P++IL
Sbjct: 299 SHCIPPRIIL 308
>gi|344303368|gb|EGW33642.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 360
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 37/313 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ + H Q LK L G+ PH+LI G SG+GK+ L+EI+G
Sbjct: 3 LWVDKYRPKTLDQLLYHDSITQSLKALSKSGDFPHLLIYGPSGAGKKTRIYCTLNEIFGS 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNV------------NLQANAKYALMGLVKEIRDNLA 454
+ EK V V SS +E NV ++ N + + L+K+I A
Sbjct: 63 SV--EKLKIDVKTFVTSSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDI----A 116
Query: 455 ITPEVS------------NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD 502
T +V +++I E D + Q ++ M+ Y+ + +LIL C +
Sbjct: 117 STEQVDFNNQSSSKTKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISN 176
Query: 503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT----FAAKIATKAKQNLRKA 558
II +K+ ++++ P +I +L I+ KE S F K++T + +NLR+A
Sbjct: 177 IIAPIKSRTLLVRIPSPSITDINSILSNISVKEGIKFSSNDLEPFYTKVSTASNRNLRRA 236
Query: 559 IMALEACKALN---YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
+++ E N P + I L WE ++ +A I + L +R +LL+
Sbjct: 237 LLSFETLTMQNETIKPETNLSIINLDWEVIIKNIANNIKTARNVATLAKIRTVFYELLSH 296
Query: 616 FVHPKLILLVMHY 628
+ ++IL + +
Sbjct: 297 CIPARIILKTLLF 309
>gi|341881278|gb|EGT37213.1| CBN-RFC-3 protein [Caenorhabditis brenneri]
Length = 354
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 145/298 (48%), Gaps = 26/298 (8%)
Query: 347 FWADKHQPSSL---NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
W DK++P L +G H +A LK L D PH+L G SG+GK+ LL E+
Sbjct: 3 LWVDKYRPKELLGKDGVDYHLEQASHLKFLAADCM-PHLLFCGPSGAGKKTRIKCLLREL 61
Query: 404 YGDACWNEKW-------PT--QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
YG + PT ++ + SS +HVE+ ++ + + +VKE +
Sbjct: 62 YGVGVDKTQLIMKSFTTPTNRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDIVKE----M 117
Query: 454 AITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
A T ++ + ++V+ E D Q+ ++ M+ Y ++CK+ILCCE IIE +
Sbjct: 118 AQTSQIETSSQKPFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEPL 177
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ C +I V P ++ V+ +I E + KI K++ NLR+AI+ +EA K
Sbjct: 178 QSRCIIINVPAPSDDKMRAVINKIIEAEKIQIPSNILQKIIEKSEGNLRRAILTIEALKM 237
Query: 568 LNYP-FADDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
N + + IP WE + E A IL +P ++ VR ++ ++++ + +I
Sbjct: 238 ENESGISANAQIPTAEWEIYIQETARMILMKQTPDMILKVRERLYEVISRLIPTTVIF 295
>gi|145504098|ref|XP_001438021.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405182|emb|CAK70624.1| unnamed protein product [Paramecium tetraurelia]
Length = 356
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 126/249 (50%), Gaps = 14/249 (5%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
L+ W + +P SL+ H +++L++L + + PH+L G +G+GK+ +A L E+
Sbjct: 2 LQQLWTESTKPKSLDSLDYHSEISEILRKLAKNSDFPHLLFYGPNGAGKKTRVLAFLKEV 61
Query: 404 YGDACW-----------NEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRD 451
YG + NE T V SS H+++ + + K + L+KE+
Sbjct: 62 YGSGVYTVTEEEKEYKINETSNTTTSCTVLSSKFHIDVAPSDADHHDKVIIQKLIKEVAS 121
Query: 452 NLAITPEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
+ + + + +++I EVD + Q ++ M+ Y + C++IL CE II +++
Sbjct: 122 SHQVNSKQTKDFKVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRS 181
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
C +I+V P ++ ++L +I+ + + +S KIA + NLR+AI+ L++ + N
Sbjct: 182 RCLLIRVPAPDQTQVAQILDKISAQYNCKISQQLINKIAIASNGNLREAILYLQSTRVNN 241
Query: 570 YPFADDQPI 578
DDQ I
Sbjct: 242 TCIKDDQNI 250
>gi|344228882|gb|EGV60768.1| hypothetical protein CANTEDRAFT_111192 [Candida tenuis ATCC 10573]
Length = 359
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 31/306 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H LK L G+ PH+L+ G SGSGK+ A LHE++G
Sbjct: 3 LWVDKYRPRRLDALSYHAPITASLKALASTGDFPHLLVYGPSGSGKKTRVYATLHELFGP 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNV------------NLQANAKYALMGLVKEIRDNLA 454
EK V SS +E NV ++ N + + L+K+I
Sbjct: 63 QV--EKLKIDVKTFTTSSNRKLEFNVLSSPFHLEITPSDMGNNDRVVIQDLLKDIASTEQ 120
Query: 455 I---------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
+ TP+ +++I E D Q ++ M+ Y+ + +LI+ +II
Sbjct: 121 VDFSNSKNNGTPKHRFKVVIINEADSLTRDAQAALRRTMEKYSANIRLIMISNTTSNIIP 180
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-----FAAKIATKAKQNLRKAIM 560
+K+ ++++ P +I +L +A KE + F +++A + QNLR+A++
Sbjct: 181 PIKSRTLLVRIPAPSVADITAILADVATKESVHFTADPVQSGFLSQVAANSDQNLRRALL 240
Query: 561 ALEACKALNYPFADD---QPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFV 617
+ E N A D + L WE ++ +++ I + S L R +LLA +
Sbjct: 241 SFETISMSNASVACDGQNAVVTLDWEVIIKNVSSSIYTNRSVSNLAKTRVVFYELLAHCI 300
Query: 618 HPKLIL 623
++IL
Sbjct: 301 PARIIL 306
>gi|389750127|gb|EIM91298.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 20/294 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D ++P SL+ H + LK L G+ PH+L G SG+GK+ L +++G
Sbjct: 3 LWVDCYRPKSLDDLHYHEGLSTRLKSLAASGDFPHMLFYGPSGAGKKTRIACTLRQLFGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V V + S +H+EL + N + + ++KEI +
Sbjct: 63 GVEKLKIDQRVFLTPSKRKLDVNIVQSNYHIELTPSEVGNYDRVVIQEILKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+T ++VI E D + Q ++ M+ Y + ++ILC +I +++ C ++
Sbjct: 123 LTARQRFKVVVINEADTLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIRSRCLLM 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDF-DLSMTFAAKIATKAKQNLRKAIMALEACK----ALN 569
+V P E+ VL +A + + A +I + N+RKAI+ LEA K +L
Sbjct: 183 RVAAPNHEEMRTVLNHVATRAGIPKIPQEAADEIVRDSNGNMRKAILVLEALKMQTPSLE 242
Query: 570 YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
P A +P WE ++A I+++ SP+R++ VR K+ +LL+ + P +I+
Sbjct: 243 GPLAIAKP---DWETYCHKVADMIISEQSPQRVMDVRAKLYELLSHCIPPTVII 293
>gi|341892055|gb|EGT47990.1| hypothetical protein CAEBREN_22178 [Caenorhabditis brenneri]
Length = 354
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 144/298 (48%), Gaps = 26/298 (8%)
Query: 347 FWADKHQPSSL---NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
W DK++P L +G H +A LK L D PH+L G SG+GK+ LL E+
Sbjct: 3 LWVDKYRPKELLGKDGVDYHLEQASHLKFLAADCM-PHLLFCGPSGAGKKTRIKCLLREL 61
Query: 404 YGDACWNEKW-------PT--QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
YG + PT ++ + SS +HVE+ ++ + + +VKE +
Sbjct: 62 YGVGVDKTQLIMKSFTTPTNRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDIVKE----M 117
Query: 454 AITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
A T ++ + ++V+ E D Q+ ++ M+ Y ++CK+ILCCE IIE +
Sbjct: 118 AQTSQIETSSQKPFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEPL 177
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ C +I V P ++ V+ +I E + KI K++ NLR+AI+ +EA K
Sbjct: 178 QSRCIIINVPAPSDDKMRAVINKIIEAEKIQIPSNILQKIIDKSEGNLRRAILTIEALKM 237
Query: 568 LNYP-FADDQPIPLG-WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
N + IP WE + E A IL +P ++ VR ++ ++++ + +I
Sbjct: 238 ENESGISASAQIPTAEWEIYIQETARMILMKQTPDMILKVRERLYEVISRLIPTTVIF 295
>gi|403417566|emb|CCM04266.1| predicted protein [Fibroporia radiculosa]
Length = 237
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H+ + L L G+ PH+L+ G SG+GK+ A LH ++G
Sbjct: 3 LWVDKYRPRTLDQLHYHKSLSVRLNALAASGDFPHMLLYGPSGAGKKTRIAATLHALFGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT 456
K +V V + S H+E+ + N + + L+KEI I
Sbjct: 63 GAQKLKIDQRVFMTPTRRKLDVNIVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQQID 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ +++I E D + Q ++ M+ Y + ++ILC +I +K+ C ++
Sbjct: 123 VSARHPFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+V P E+ EVL +A +E FDL A +I A N+RKA++ LEA K
Sbjct: 183 RVASPSEEEMSEVLRYVAGREQFDLPDDAAREIVQDANGNMRKALLVLEALK 234
>gi|385302248|gb|EIF46388.1| activator 1 40 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 382
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 143/317 (45%), Gaps = 45/317 (14%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WADK++P +L H ++ LK L G+ PHIL+ G SG+GK+ M+LLHE+YG
Sbjct: 3 LWADKYRPKTLGQLTYHPDISKKLKLLAKSGDFPHILMYGPSGAGKKTRCMSLLHELYGS 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI- 455
K + V SS H+E+ ++ N + + L+K+I +I
Sbjct: 63 GVDRLKVDVKTFQTPSGRKLEFNVISSPFHMEITPSDMGNNDRIVIQELLKDIGQTESID 122
Query: 456 ---------TPEVSN-----AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501
T +SN +++I E ++ + Q ++ M+ ++ + +L+L C
Sbjct: 123 FAGLLKGEDTKVISNNKKRFKVVIINEAEQLSRDAQAALRRTMEKFSANIRLVLICTSTS 182
Query: 502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQI------ARKE---DFDLSMTFAAKIATKAK 552
+II+ +K+ I+V P E +VL I ARKE D IA
Sbjct: 183 NIIDPIKSRTLAIRVGLPSIDECGQVLETILSHESMARKEFPSDQSERYEIYRHIADACN 242
Query: 553 QNLRKAIMALEACKALNYPFADDQPIPL------GWEEVLIELAAEILADPSPKRLVMVR 606
QNLR IM LEA N D+ P W+ V+ ELA IL D S +L R
Sbjct: 243 QNLRMGIMMLEALYMNN-----DKVTPTTXVIRPDWQLVIEELARGILKDRSVSKLQQTR 297
Query: 607 GKIQKLLAEFVHPKLIL 623
+ +LLA + LIL
Sbjct: 298 SVLYELLAHAIPASLIL 314
>gi|254567163|ref|XP_002490692.1| Replication factor C [Komagataella pastoris GS115]
gi|238030488|emb|CAY68412.1| Replication factor C [Komagataella pastoris GS115]
gi|328351077|emb|CCA37477.1| Replication factor C subunit 5 [Komagataella pastoris CBS 7435]
Length = 369
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 28/304 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WADK++P +L+ H + +L L G+ PH+L G SG+GK+ +A L +IYG
Sbjct: 3 LWADKYRPKTLDDLDYHGKISNMLSSLATSGDFPHLLFHGPSGAGKKTRILATLRQIYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K +V V V SS +H+E+ ++ N + + L+KE+ I
Sbjct: 63 NIEKLKVDPKVFVTATKRKLEFNVVSSPNHLEITPSDMNNNDRVVIQDLLKEVAQTETID 122
Query: 457 -PEVSN-----AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
V++ +++I E + Q ++ M+ Y+ + +L+L C IIE +K+
Sbjct: 123 FTHVADHKNRFKVVIINEAELLTRDAQAALRRTMEKYSANIRLVLVCNSISSIIEPIKSR 182
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAA----------KIATKAKQNLRKAIM 560
+I+V P E+ V ++ R + +++ +F A KIA NLR ++
Sbjct: 183 TLLIRVAAPTDEEMGSVFEKVLRDQP-EVAKSFPADETERQQIYSKIAKVTDHNLRTGLL 241
Query: 561 ALEACKALNYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHP 619
LEA + N P+ + WE V+ +LA I+ + + +L R + +L++ +
Sbjct: 242 LLEALYSYNPSITTKTPMIMPDWENVIKKLAIGIVTERTVSKLQQSRTDLYELISHSIPA 301
Query: 620 KLIL 623
KLIL
Sbjct: 302 KLIL 305
>gi|354546913|emb|CCE43645.1| hypothetical protein CPAR2_212890 [Candida parapsilosis]
Length = 362
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 34/307 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H Q L+ L G+ PH+L+ G SG+GK+ LHEI+G
Sbjct: 3 LWVDKYRPKTLSQLSYHDSITQNLRALSKSGDFPHLLVYGPSGAGKKTRIYCTLHEIFGS 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ K + V V SS +H+E+ ++ N + + L+K++ A T
Sbjct: 63 SVEKLKIDVKNFVTTSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDV----AST 118
Query: 457 PEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
+V +++I E D + Q ++ M+ Y+ + +LIL C +II
Sbjct: 119 EQVDFGNQSSKKHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAP 178
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-------FAAKIATKAKQNLRKAI 559
+K+ ++++ P +I +L +A KE S T F ++AT + +NLR+++
Sbjct: 179 IKSRTLLVRIPSPSIEDISSILGHVAEKEHVKFSSTNGQDVDQFYNQVATTSNRNLRRSL 238
Query: 560 MALEACKALNYPFADDQ---PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEF 616
+A E N Q I L WE V+ +A I + L +R +LL+
Sbjct: 239 LAFETIYMQNETINVKQLHSVIVLDWETVIKNMAKTITNSRTVATLAKLRTVSYELLSHC 298
Query: 617 VHPKLIL 623
+ + IL
Sbjct: 299 IPARTIL 305
>gi|303315063|ref|XP_003067539.1| Activator 1 38 kDa subunit, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107209|gb|EER25394.1| Activator 1 38 kDa subunit, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 344
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 21/295 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
D+ +P +L+ H + LK L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELN-VNLQANAKYALMGLVKEI--RDNLA 454
K +V + +S +H+E+ ++ + + L+KEI +
Sbjct: 63 GVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI +VL ++E + + +IA ++ +NLR+A++ + D
Sbjct: 183 RVAAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALLIEKVT--------D 234
Query: 575 DQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D + P WE ++ +A EI+A+ SP R++ VR ++ LL + P IL + +
Sbjct: 235 DTVVPPPDWEALISLIADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTF 289
>gi|340382661|ref|XP_003389837.1| PREDICTED: replication factor C subunit 3-like [Amphimedon
queenslandica]
Length = 195
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 32/222 (14%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++LN H+ +A LK+ V + PH+LI G SG+GK+ + +L E+YG
Sbjct: 3 LWVDKYRPTNLNKLHYHQEQAASLKDWVQSDDFPHLLIYGPSGAGKKTRMVCILRELYGA 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
EK + H+E V + L I ++ ++V+
Sbjct: 63 GV--EKLRIE----------HMEFIV----------------LTHKLFI---INIPVVVL 91
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
EVD+ + Q+ ++ M+ YT +C+LIL C +I ++K+ C ++V P EI
Sbjct: 92 TEVDRLTKDAQHALRRTMELYTGTCRLILVCNSTSKLIPAIKSRCLAVRVPAPTIDEICS 151
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQN-LRKAIMALEACKA 567
VL + KE + T A +IA K+++N LRKAI+ EAC+
Sbjct: 152 VLQYVCHKESLTIPDTLAKRIAEKSERNHLRKAILLCEACRV 193
>gi|189198796|ref|XP_001935735.1| replication factor C subunit 5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982834|gb|EDU48322.1| replication factor C subunit 5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 348
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 19/289 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DKH+P +L H + L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 3 LLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V + +S +H+E+ + N + + L+KE+ +
Sbjct: 63 GVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ + ++VI E D Q ++ M+ Y+ + +LIL +II +++ ++
Sbjct: 123 LGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTLLV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P EI VL ++ +KE + + +IA + +NLRKA++ EA A Y
Sbjct: 183 RVAAPTESEICSVLSKVGKKEGWKDVESLNQRIAKDSGRNLRKALLMFEAVHAQKY---- 238
Query: 575 DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+P + ++A +I+ + SP+RL+ VR + LL+ + I+
Sbjct: 239 ---VPFLPTRLRAQIARQIVEERSPQRLLQVRASLYDLLSHCIDSTTII 284
>gi|68472569|ref|XP_719603.1| hypothetical protein CaO19.9577 [Candida albicans SC5314]
gi|46441427|gb|EAL00724.1| hypothetical protein CaO19.9577 [Candida albicans SC5314]
gi|238881908|gb|EEQ45546.1| activator 1 40 kDa subunit [Candida albicans WO-1]
Length = 362
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 38/314 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H L+ L G+ PH+L+ G SGSGK+ L+EI+G
Sbjct: 3 LWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGP 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNV------------NLQANAKYALMGLVKEIRDNLA 454
EK V V SS +E NV ++ N + + L+K++ A
Sbjct: 63 QV--EKLKIDVKNFVTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDV----A 116
Query: 455 ITPEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
T +V A +++I E D + Q ++ M+ Y+ + +LIL C +II
Sbjct: 117 STEQVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNII 176
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM-------TFAAKIATKAKQNLRK 557
+K+ ++++ P +I +L +A KE S F +K+A + +NLR+
Sbjct: 177 APIKSRTLLVRIPSPSVDDINHILGHVAEKESLKFSTHNDSEINHFYSKVAETSNRNLRR 236
Query: 558 AIMALEACKALNYPF---ADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLA 614
+++ E N +D I L WE ++ +A I + + L R + +LL+
Sbjct: 237 CLLSFETISMQNETINVRSDVAKIALDWEAIIRNMAISIQKNQNVATLAKTRVVLYELLS 296
Query: 615 EFVHPKLILLVMHY 628
+ ++IL + +
Sbjct: 297 HCIPARIILKTLLF 310
>gi|68472826|ref|XP_719478.1| hypothetical protein CaO19.2029 [Candida albicans SC5314]
gi|46441297|gb|EAL00595.1| hypothetical protein CaO19.2029 [Candida albicans SC5314]
Length = 362
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 38/314 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H L+ L G+ PH+L+ G SGSGK+ L+EI+G
Sbjct: 3 LWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGP 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNV------------NLQANAKYALMGLVKEIRDNLA 454
EK V V SS +E NV ++ N + + L+K++ A
Sbjct: 63 QV--EKLKIDVKNFVTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDV----A 116
Query: 455 ITPEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
T +V A +++I E D + Q ++ M+ Y+ + +LIL C +II
Sbjct: 117 STEQVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNII 176
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM-------TFAAKIATKAKQNLRK 557
+K+ ++++ P I +L +A KE S F +KIA + +NLR+
Sbjct: 177 APIKSRTLLVRIPSPSVDNINHILGHVAEKESLKFSTHNDSEINHFYSKIAETSNRNLRR 236
Query: 558 AIMALEACKALNYPF---ADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLA 614
+++ E N +D I L WE ++ +A I + + L R + +LL+
Sbjct: 237 CLLSFETISMQNETINVRSDVAKIALDWEAIIRNMAISIQKNQNVATLAKTRVVLYELLS 296
Query: 615 EFVHPKLILLVMHY 628
+ ++IL + +
Sbjct: 297 HCIPARIILKTLLF 310
>gi|156836873|ref|XP_001642477.1| hypothetical protein Kpol_264p5 [Vanderwaltozyma polyspora DSM
70294]
gi|156113011|gb|EDO14619.1| hypothetical protein Kpol_264p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 356
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 145/302 (48%), Gaps = 29/302 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P +L+ + +LLK L + PH+L+ G +GSGK+ MALL I+G
Sbjct: 3 LWVDKYRPRTLDSLTHNGSLTELLKSLSHQPKDLPHLLLYGPNGSGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 SGVYRLKIDVRQFVTSSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + +VI E D Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQESKDGLAHRYKC----VVINEADSLTRDAQAALRRTMEKYSKNIRLIMVCDSMSSII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +I+ P E+++ L+++++KE+ + S KIA ++ NLR ++ LE
Sbjct: 179 PPIKSRCLMIRCSAPTDDEVVQNLMEVSKKENLQIESNDILNKIAIESDGNLRLGLLMLE 238
Query: 564 ACKALN--YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKL 621
+ N + I W V+++L +I + S L+ R + LLA + PK+
Sbjct: 239 SMALTNELQLKSSTAIIRPDWLVVILKLTNKIQRERSVSSLIECRAILYDLLAHCIPPKI 298
Query: 622 IL 623
IL
Sbjct: 299 IL 300
>gi|406602446|emb|CCH45987.1| putative replication factor C subunit 3 [Wickerhamomyces ciferrii]
Length = 344
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 145/300 (48%), Gaps = 36/300 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H ++ LK LVV G SG+GK+ +A+LHE++G
Sbjct: 3 LWVDKYRPHTLDTIDYHFDVSKRLKALVV---------YGPSGAGKKTRVIAVLHELFGA 53
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K + V SS +H+E+ +L N + + L+KEI A T
Sbjct: 54 GVEKMKIDVRTFTTSTNRKLEFNVVSSPYHMEITPSDLGNNDRVVIQDLLKEI----AQT 109
Query: 457 PEVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+V + +++I E D + Q ++ M+ Y+ + +L+L +II +K+
Sbjct: 110 EQVDFSGKHRFKVVIINEADSLSRDAQAALRRTMEKYSKNIRLVLISNTTSNIIAPIKSR 169
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT------FAAKIATKAKQNLRKAIMALEA 564
+I++ P +I ++L +++ K++ L + ++A +K+NLR+A++ EA
Sbjct: 170 TLLIRISAPNLQDITKILDKLSEKQEVSLPSSQEERELILNRVAIASKRNLRRALLNFEA 229
Query: 565 CKALNYPFADDQP-IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
N P I L WE V+++LA+ I D + R+ R +L++ + PKLIL
Sbjct: 230 LVMQNQELKTTTPMITLDWEGVILKLASNISRDRNVARISSSRTVFYELISHCIPPKLIL 289
>gi|254584388|ref|XP_002497762.1| ZYRO0F12914p [Zygosaccharomyces rouxii]
gi|238940655|emb|CAR28829.1| ZYRO0F12914p [Zygosaccharomyces rouxii]
Length = 352
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 23/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SL+ + H +L+ + + PH+L+ G +GSGK+ MALL I+G
Sbjct: 3 LWVDKYRPRSLDTLSHNGHLTSVLQSISQQPRDLPHLLLYGPNGSGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
+ K + V V SSA+H+E+ ++ N + + L+KE+ +
Sbjct: 63 QGVYKMKIDVRQFVTPSNRKLDLNVVSSAYHLEITPSDMGINDRIVIQQLLKEVAQMEQV 122
Query: 456 TPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
+ S +VI E D Q ++ M+ Y+ + +LI+ C+ II +K
Sbjct: 123 DFQESQDGLAHRYKCVVINEADSLTRDAQAALRRTMEKYSRNVRLIMLCDSVSSIISPIK 182
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAK-IATKAKQNLRKAIMALEACKA 567
+ C +++ P E + +L +A KE L K IA +++ NLRKA++ LE+
Sbjct: 183 SRCFMVRCPAPPNDETVNILNYVASKEKVQLESDEVLKVIAQESEGNLRKALLMLESMAL 242
Query: 568 LN-YPFADDQPI--PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
N PI P WE V+ +LA +I + S LV R + LLA + + IL
Sbjct: 243 CNEMQLKKSTPIIKP-DWESVISKLATKIQKEKSVGCLVECRSFLYDLLAHCIPARTIL 300
>gi|19112438|ref|NP_595646.1| DNA replication factor C complex subunit Rfc5 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913232|sp|O94697.1|RFC5_SCHPO RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5
gi|4455787|emb|CAB36876.1| DNA replication factor C complex subunit Rfc5 (predicted)
[Schizosaccharomyces pombe]
Length = 358
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 19/295 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P +L H+ ++ L L PH+L+ G SG+GK+ +A+L E+YG
Sbjct: 2 LWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMG-LVKEIRDNLAIT 456
K + + + SS HH+E+ + N +M L+K++ + +
Sbjct: 62 GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121
Query: 457 PEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++VI D+ Q ++ M+ Y+++ +LIL IIE +++ ++
Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL---NYP 571
+V P EI+ V+ +I + + + IA +NLRKAI+ LE A N
Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQ 241
Query: 572 FAD---DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D P+P W+ + ++ +L + SP R++ VR + LL+ + P IL
Sbjct: 242 LIDTGAQLPLP-DWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTIL 295
>gi|413932846|gb|AFW67397.1| hypothetical protein ZEAMMB73_776055 [Zea mays]
Length = 182
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Query: 416 QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEVSNA--MIVIYEVDKA 472
++ + + SSAHHVE+N + +Y + ++KE+ N I + A ++V+ EVDK
Sbjct: 26 EIELAMLSSAHHVEMNPSDAGFQDRYVVQEIIKEMAKNRPIDAKGRRAFKVLVLNEVDKL 85
Query: 473 AEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA 532
+ Q+ ++ M+ Y+ SC+LILCC + E+V++ C ++V+ P +I++VL I
Sbjct: 86 SREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNAPSEDQIVQVLEFIG 145
Query: 533 RKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+KE+ L FAA+IA ++ +NLR+AI+ E CK
Sbjct: 146 KKENLILPAGFAARIAAQSNRNLRRAILFFETCK 179
>gi|367015340|ref|XP_003682169.1| hypothetical protein TDEL_0F01470 [Torulaspora delbrueckii]
gi|359749831|emb|CCE92958.1| hypothetical protein TDEL_0F01470 [Torulaspora delbrueckii]
Length = 354
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 141/299 (47%), Gaps = 23/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SL + LL+ L + PH+L+ G +GSGK+ M+LL I+G
Sbjct: 3 LWVDKYRPKSLQTLSHNDDLTNLLQSLSHQPRDLPHLLLYGPNGSGKKTRCMSLLASIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
+ K + V V SSA+H+E+ ++ N + + L+KE+ +
Sbjct: 63 SGVYRMKIDVRQFVTPSRRKLDLNVVSSAYHLEITPSDMGINDRIVIQELLKEVAQMEQV 122
Query: 456 TPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
+ S +VI E D Q ++ M+ Y+ + +LI+ C+ II +K
Sbjct: 123 DFQDSADGLSHRYKCVVINEADSLTRDAQAALRRTMEKYSRNIRLIMVCDSMSSIISPIK 182
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKA 567
+ C +++ P E +++L ++ E+ L S KIAT + NLR A++ LE A
Sbjct: 183 SRCLMVRCPAPTDQETIKILNEVVTAENVKLESPEVLEKIATTSNGNLRTALLTLET-MA 241
Query: 568 LNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
LN P+ WE V++++A +I + S L+ R + LLA + ++IL
Sbjct: 242 LNNEMNLRLNTPVIRPDWESVILKMANKIQKERSVGCLIECRAILYDLLAHCISARIIL 300
>gi|346972442|gb|EGY15894.1| replication factor C subunit 5 [Verticillium dahliae VdLs.17]
Length = 350
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 23/297 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H + L L P L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPKSLDALTYHPELSDRLSSL--RRLPPTSLVYGPSGAGKKTRIVATLKELYGSGV 62
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
K +V + +S +H+E+ + N + + L+KE+ A T +
Sbjct: 63 EKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEV----AQTQQ 118
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
V A ++VI E D Q ++ M+ Y+ + +LIL +II +++
Sbjct: 119 VDQAARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 178
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+++V P EI +VL Q A +E + ++ +IA ++ +NLR+A++ EA A N
Sbjct: 179 LVRVAAPTHAEICDVLGQSAEREGWPVAKGLHMRIAQESGRNLRRALLMYEAVHAQNEKV 238
Query: 573 ADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
D I P WE ++ ++A EI+ + +P R++ VR K+ LL + IL + +
Sbjct: 239 TDATRIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATTILKTLTF 295
>gi|255723854|ref|XP_002546856.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
gi|240134747|gb|EER34301.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
Length = 362
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 142/312 (45%), Gaps = 34/312 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H Q L+ L G+ PH+L+ G SGSGK+ L+EI+G
Sbjct: 3 LWVDKYRPKTLDQLSYHDSITQSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGS 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K + V V SSA+H+E+ ++ N + + L+K++ A T
Sbjct: 63 QVEKLKIDVKNFVTSSNRKLEFNVLSSANHLEITPSDMGNNDRVVIQDLLKDV----AST 118
Query: 457 PEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
+V A +++I E D + Q ++ M+ Y+ + +LIL C +II
Sbjct: 119 EQVDFANQSRTKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAP 178
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-------FAAKIATKAKQNLRKAI 559
+K+ ++++ P +I +L +A E T F IAT + +NLR+ +
Sbjct: 179 IKSRTLLVRIPSPSVDDISNILNNVAESEAIKFKATNELAMKKFYNDIATTSNRNLRRCL 238
Query: 560 MALEACKALNYPF---ADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEF 616
++ E+ N +D + L WE ++ +A I A + L R + +LL+
Sbjct: 239 LSFESISMQNETIDTNSDVGKLELDWEVIITNMANNIKAHRTITTLSKSRIVLYELLSHC 298
Query: 617 VHPKLILLVMHY 628
+ + IL + +
Sbjct: 299 IPARTILKTLLF 310
>gi|149248680|ref|XP_001528727.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146448681|gb|EDK43069.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 362
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 34/307 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L H+ Q L+ L G+ PH+L+ G SG+GK+ A LH I+G
Sbjct: 3 LWVDKYRPKTLAQLSYHKDITQNLQALSKSGDFPHLLVYGPSGAGKKTRIYATLHAIFGV 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ K + V SS HH+E+ ++ N + + L+K++ A T
Sbjct: 63 SVEKLKIDVKTFTTPSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDV----AST 118
Query: 457 PEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
+V +++I E D + Q ++ M+ Y+ + +LIL C +II
Sbjct: 119 EQVDFGNQSSKRHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAP 178
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-------FAAKIATKAKQNLRKAI 559
+K+ ++++ P EI +L +A++E S T F ++AT + +NLR+A+
Sbjct: 179 IKSRTLLVRIPSPSVAEISLILHDVAQEEKVKFSSTDQQALTGFYEQVATVSNRNLRRAL 238
Query: 560 MALEACKALNYPFADDQ---PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEF 616
+A E N Q I L WE ++ +A I + L +R +LL+
Sbjct: 239 LAFETICMQNETINVKQMHSVIVLDWELIIRNMAKSISTTRNVANLAKLRTATYELLSHC 298
Query: 617 VHPKLIL 623
+ + IL
Sbjct: 299 IPARTIL 305
>gi|241950693|ref|XP_002418069.1| activator 1 40 kda subunit, putative; replication factor c subunit
5, putative; replication factor c5, putative [Candida
dubliniensis CD36]
gi|223641408|emb|CAX43368.1| activator 1 40 kda subunit, putative [Candida dubliniensis CD36]
Length = 362
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 144/315 (45%), Gaps = 40/315 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H + L+ L G+ PH+L+ G SGSGK+ L+EI+G
Sbjct: 3 LWVDKYRPRTLDQLTYHDSITKSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGP 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNV------------NLQANAKYALMGLVKEIRDNLA 454
EK V V SS +E NV ++ N + + L+K++ A
Sbjct: 63 QV--EKLKIDVKNFVTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDV----A 116
Query: 455 ITPEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
T +V A +++I E D + Q ++ M+ Y+ + +LIL C +II
Sbjct: 117 STEQVDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNII 176
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-------FAAKIATKAKQNLRK 557
+K+ ++++ P +I +L +A KE + F +K+A + +NLR+
Sbjct: 177 APIKSRTLLVRIPSPSVDDINHILSHVAEKESLKFNTNNDSEIDHFYSKVAEASNRNLRR 236
Query: 558 AIMALEA----CKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLL 613
+++ E + +N +D + L WE ++ +A I + + L R + +LL
Sbjct: 237 CLLSFETISMQAETINVR-SDVAKVALDWETIVRNMAINIQKNQNVATLAKTRVVLYELL 295
Query: 614 AEFVHPKLILLVMHY 628
+ + ++IL + +
Sbjct: 296 SHCIPARIILKTLLF 310
>gi|255715673|ref|XP_002554118.1| KLTH0E14696p [Lachancea thermotolerans]
gi|238935500|emb|CAR23681.1| KLTH0E14696p [Lachancea thermotolerans CBS 6340]
Length = 384
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 136/303 (44%), Gaps = 27/303 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SL+ LLK L V+ + PH+L G +G+GK+ MALL I+G
Sbjct: 29 LWVDKYRPKSLDALTHTPRLTHLLKSLSVEPRDLPHLLFYGPNGAGKKTRCMALLQSIFG 88
Query: 406 DACWNEKWPT-QVLVP--------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
+ K Q P V SS +H+E+ ++ N + + L+KE+ +
Sbjct: 89 SGVYKLKIDVRQFTTPSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 148
Query: 456 TPEVSNA-----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+ ++ ++I E D Q ++ M+ Y+ + + I+ CE +I
Sbjct: 149 DFQTASGAETGGLAHRYKCVIINEADSLTRDAQAALRRTMEKYSRNIRFIMLCESMSSMI 208
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS-MTFAAKIATKAKQNLRKAIMALE 563
+K+ C +++ P T E + L+++ +E + IA NLRKA++ E
Sbjct: 209 APIKSRCLLVRTPAPTTQETADALVKVGGQEKVTVEDEAILNTIAESCDGNLRKALLTFE 268
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ ALN L W V++++A IL D S LV R + LLA + K
Sbjct: 269 S-MALNNEMCLKSSTALIRADWVVVILKMANRILKDRSVSSLVECRATLYDLLAHCIPAK 327
Query: 621 LIL 623
+I+
Sbjct: 328 VII 330
>gi|448514010|ref|XP_003867042.1| Rfc5 hypothetical proteineteropentameric replication factor C
subunit [Candida orthopsilosis Co 90-125]
gi|380351380|emb|CCG21604.1| Rfc5 hypothetical proteineteropentameric replication factor C
subunit [Candida orthopsilosis Co 90-125]
Length = 362
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 137/303 (45%), Gaps = 26/303 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P +L+ H Q L+ L G+ PH+L+ G SG+GK+ LHEI+G
Sbjct: 3 LWVDKYRPKTLSQLSYHESITQNLRALSKSGDFPHLLVYGPSGAGKKTRIYCTLHEIFGS 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ K + V V SS +H+E+ ++ N + + L+K++ +
Sbjct: 63 SVEKLKIDVKNFVTTSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDVASTEQVD 122
Query: 457 PEVSN------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
N +++I E D + Q ++ M+ Y+ + +LIL C +II +K+
Sbjct: 123 FGNQNNRRHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSR 182
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-------FAAKIATKAKQNLRKAIMALE 563
++++ P I +L +A KE S + F +++AT + NLR++++A E
Sbjct: 183 TLLVRIPSPSVENISSILGHVAEKEHVKFSSSNGQEIAQFYSQVATTSHCNLRRSLLAFE 242
Query: 564 ACKALNYPFADDQ---PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
N Q I L WE V+ +A I + L +R +LL+ + +
Sbjct: 243 TIYMQNETINVKQLHSVIVLDWEIVIKNMAKTITTSRNVATLAKLRTVSYELLSHCIPAR 302
Query: 621 LIL 623
IL
Sbjct: 303 TIL 305
>gi|367006843|ref|XP_003688152.1| hypothetical protein TPHA_0M01430 [Tetrapisispora phaffii CBS 4417]
gi|357526459|emb|CCE65718.1| hypothetical protein TPHA_0M01430 [Tetrapisispora phaffii CBS 4417]
Length = 356
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P +++ + + L L V + PH+L+ G +GSGK+ MALL I+G
Sbjct: 3 LWVDKYRPKTISKLSHNDSLTEFLTSLTVQARDLPHLLLYGPNGSGKKTRCMALLEAIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 PGVYRLKIDVRQFVTPSNKKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E D Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEADSLTRDAQAALRRTMEKYSKNIRLIMICDSMSSII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +I+ P EI+ +L IA KE + S K+A +A NLR AI+ LE
Sbjct: 179 SPIKSRCLMIRSSAPTDEEIVNILKDIAEKEGVTVASDDILKKVAIEADGNLRVAILMLE 238
Query: 564 ACKALNYPFADDQPIPL--GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKL 621
+ N + + W V+++LA +I + S LV R + LLA + ++
Sbjct: 239 SMALTNELSLKSNTVIIKPDWLVVILKLANKIQRERSVACLVECRAVLYDLLAHCIPARV 298
Query: 622 IL 623
IL
Sbjct: 299 IL 300
>gi|331236101|ref|XP_003330710.1| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309700|gb|EFP86291.1| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 360
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 140/298 (46%), Gaps = 21/298 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK++P L H+ + ++ L + PH L G SG+GK+ A L E++G
Sbjct: 3 LLVDKYRPKKLEELDYHQGLSDRIRALARTADFPHCLFYGPSGAGKKTRIAATLTELFGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
+ +V V V S +H+EL ++ + + ++KE+ + +
Sbjct: 63 GAQKLRIDQKVFVTPSRRRLDVQVVQSNYHLELTPSDVGQWDRSVVQDVLKEVGQSAQLD 122
Query: 457 PEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++VI+ D+ Q ++ M+ +T + +LILC II +++ C ++
Sbjct: 123 SGATQRFKVVVIHGADELTNDAQAALRRTMERHTSTMRLILCATSTAKIIGPIRSRCLLL 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSM--TFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+V P +I +VL ++ K F S+ A IA + NLR+A++ L+A +A + F
Sbjct: 183 RVGAPNPEQIAQVLNNVSNKASFSTSLPDETAMAIALSSNGNLRRALLTLDAVRAQDETF 242
Query: 573 A------DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
+ D P P WE + +LA I + SP +L+ R + +LL + P ++++
Sbjct: 243 SKSRTSPDSIPRP-DWEVYIDKLAGVIAKEQSPDKLLEARAMLYELLVHLIPPSVVIV 299
>gi|118353287|ref|XP_001009848.1| Replication factor C subunit, putative [Tetrahymena thermophila]
gi|89291681|gb|EAR89669.1| Replication factor C subunit, putative [Tetrahymena thermophila
SB210]
Length = 358
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 140/300 (46%), Gaps = 15/300 (5%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
+ W D+ +P SL+ H + L++L + PH+L+ G +G+GK+ AMA L E+
Sbjct: 1 MEKLWVDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMAFLQEV 60
Query: 404 YGDAC-----------WNEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRD 451
YG+ N T V V + SS +H+++ + + + + L+KE+
Sbjct: 61 YGNGVHKVKSEEREFKVNPNTSTTVEVNIISSNYHLDVTPADAENQDRAVIQKLIKEVAS 120
Query: 452 NLAITPEVSN--AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
+ P +I+I EVD+ Q ++ M+ Y C+LIL E+ +I +++
Sbjct: 121 THQLDPNSQRRFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVILPLRS 180
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
C +I+V P ++ V+ ++ +++ ++ A K A NLR I+ L+ K L
Sbjct: 181 RCLLIRVAAPSEQDVKAVVRKLNNEKNLNIPDDLACKFAKSCDYNLRAVILNLQTQKLLK 240
Query: 570 YPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
+ + + W++ + +A I +P +L +R K LL + +I+ + Y
Sbjct: 241 STYNNSMEVQEPEWKKEIKNIAGIIKEHQNPAKLKEIRSKFYDLLVNCIPGDIIIKNLMY 300
>gi|260942391|ref|XP_002615494.1| hypothetical protein CLUG_04376 [Clavispora lusitaniae ATCC 42720]
gi|238850784|gb|EEQ40248.1| hypothetical protein CLUG_04376 [Clavispora lusitaniae ATCC 42720]
Length = 386
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 28/305 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L H + L+ L G+ PH+L+ G SG+GK+ L+E++G
Sbjct: 29 LWVDKYRPKKLENLSYHDSITKSLQSLASSGDFPHLLVYGPSGAGKKTRIYTTLNELFGA 88
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K + V SS HH+E+ ++ N + + L+K++ +
Sbjct: 89 QVEKMKIDVKTFTTSSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTEQVD 148
Query: 457 ------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
P+ +++I E D Q ++ M+ Y+ + +LI+ C +II +K+
Sbjct: 149 FASQGRPKHRFKIVLINEADSLTRDAQAALRRTMEKYSANIRLIMVCNTIANIIAPIKSR 208
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKE--------DFDLSMTFAAKIATKAKQNLRKAIMAL 562
++++ P EI +L +A KE D + +A + +NLR+A+++
Sbjct: 209 TLLVRIPAPSKGEIASILSGVAEKEAVKFNPPNDDQARQVYLETVAEASDRNLRRALLSF 268
Query: 563 EAC----KALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVH 618
E + + + I L WE ++ + IL++P L +R +LL+ +
Sbjct: 269 ETLCMQNETIQLKNLEAAAITLDWELIIQNITKSILSEPKVATLAKLRLTFYELLSHCIP 328
Query: 619 PKLIL 623
+LIL
Sbjct: 329 ARLIL 333
>gi|320584115|gb|EFW98326.1| Replication factor C [Ogataea parapolymorpha DL-1]
Length = 381
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 40/316 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WADK++P +L+ H ++ L+ + G PH+L+ G G+GK+ +A L EIYG
Sbjct: 3 LWADKYRPRTLSELDFHPKISRQLQVMASSGEFPHLLVYGPPGAGKKTRVLATLREIYGA 62
Query: 407 A---------CWNEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIR------ 450
+N ++ V SS+ H+E+ ++ N + + L+KEI
Sbjct: 63 GTERLRVDVKAFNLPSGRKLEFNVISSSFHLEITPSDMGNNDRIVIQDLLKEIGQIESLD 122
Query: 451 ----DNLAITPEVSN--------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498
+N ++P +++I E + Q ++ M+ Y+ + +LIL C
Sbjct: 123 FSRFENAVMSPNTKEQNSGKKKFKVVIINEAELLTRDAQAALRRTMEKYSANIRLILICN 182
Query: 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKE---------DFDLSMTFAAKIAT 549
+II+ +K+ I++ P T VL I RKE D + +I+
Sbjct: 183 STSNIIDPIKSRTLPIRIASPTTSACAGVLGMILRKEHHAKKAFPDDDEQRNIIFKRISD 242
Query: 550 KAKQNLRKAIMALEACKALNYPFADDQPI--PLGWEEVLIELAAEILADPSPKRLVMVRG 607
+++NLR +IM +EA + + PI P W +VL EL I D S RL R
Sbjct: 243 ASERNLRMSIMMMEAMYMNHDTVSITTPIIKP-DWADVLHELVTGICKDRSVSRLQQARS 301
Query: 608 KIQKLLAEFVHPKLIL 623
+ +LLA + KL+L
Sbjct: 302 ILYELLAHAIPAKLLL 317
>gi|45187570|ref|NP_983793.1| ADL303Cp [Ashbya gossypii ATCC 10895]
gi|44982308|gb|AAS51617.1| ADL303Cp [Ashbya gossypii ATCC 10895]
gi|374107005|gb|AEY95913.1| FADL303Cp [Ashbya gossypii FDAG1]
Length = 355
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 26/300 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKEL-VVDG---NCPHILIKGQSGSGKRALAMALLHE 402
W DKH+P SL H A L K+L + G + PHIL+ G +GSGK+ M LL
Sbjct: 3 LWVDKHRPKSLTSL---SHTASLTKQLEALAGSAKDLPHILLYGPNGSGKKTRCMGLLAS 59
Query: 403 IYGDACWNEKWPT-QVLVP--------VASSAHHVELN-VNLQANAKYALMGLVKEIRDN 452
I+G + K Q + P V SS +H+E+ ++ N + + L+KEI
Sbjct: 60 IFGAGVYKLKIDVRQFVTPSNKKLELNVVSSPYHIEITPSDMGHNDRIVIQELLKEIAQM 119
Query: 453 LAITPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
+ + + ++I E + Q ++ M+ Y+ + ++I+ C+ II
Sbjct: 120 EQVDFQSGSEGLARRYKSVIINEAESLTRDAQAALRRTMEKYSRNIRVIMLCDSLSSIIA 179
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA- 564
+K+ C +++V P E++ ++ ++ +E S +IA A NLR A++ LE+
Sbjct: 180 PIKSRCMLVRVPAPAPAEMVAIMERVCTQEGVTASEHKLYEIAEFADGNLRLALLTLESM 239
Query: 565 CKALNYPFAD-DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
C N D + W V+ LA ++L + + LV RG + LL+ + P +IL
Sbjct: 240 CIQHNLKLTDTSTTVTPDWMLVVCRLANKVLKERTVGSLVECRGILYDLLSHCIPPDIIL 299
>gi|353234656|emb|CCA66679.1| probable RFC5-DNA replication factor C, 40 KD subunit
[Piriformospora indica DSM 11827]
Length = 325
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 130/266 (48%), Gaps = 22/266 (8%)
Query: 382 ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA 441
+L G SG+GK+ L E++G EK V + S ++LN+ +Q+N
Sbjct: 1 MLFYGPSGAGKKTRIAGTLRELFGAG--TEKLKIDQRVFMTPSRRKLDLNI-VQSNYHIE 57
Query: 442 L----MGL-----VKEIRDNLAITPEVSNA------MIVIYEVDKAAEHIQYLIKWIMDG 486
+ +G+ ++EI +A T +V ++VI E D Q ++ M+
Sbjct: 58 ITPSDVGIYDRVVIQEILKEIAQTQQVDLGAKQRFKVVVINEADSLTRDAQAALRRTMEK 117
Query: 487 YTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAK 546
Y + ++ILC +I +K+ C +++V P E+ VL +A+KE F LS A+
Sbjct: 118 YMANMRIILCSTSTSKLIAPIKSRCLLVRVGAPTDDEMTSVLQYVAKKERFTLSDEVASN 177
Query: 547 IATKAKQNLRKAIMALEACKA----LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRL 602
IA A N RKA++ LEA K L+ QP WE +A I+ + +PKR+
Sbjct: 178 IARDADGNTRKAVLMLEAMKMQHPNLSETTMSIQPAKPDWETYCHHVADMIVQEQTPKRV 237
Query: 603 VMVRGKIQKLLAEFVHPKLILLVMHY 628
+ VRGK+ +LL+ + P ++L V +
Sbjct: 238 MDVRGKLYELLSHCIPPHVVLKVRDF 263
>gi|300122545|emb|CBK23114.2| unnamed protein product [Blastocystis hominis]
gi|300122911|emb|CBK23918.2| unnamed protein product [Blastocystis hominis]
Length = 354
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 144/294 (48%), Gaps = 20/294 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
DK +P +L H+ + L +L PH+L G SG GK+ MALL E++G
Sbjct: 2 LLVDKQRPKTLEEMDYHKDMSINLMKLASSNEFPHMLFYGPSGCGKKTRIMALLREMFGS 61
Query: 407 ACWNE-------KWPTQVLVPVASSA--HHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
K P+Q + + + A +H+ELN + Y + V+EI +A
Sbjct: 62 GVEKLRMEKREFKTPSQKSIEIVTIASNYHIELNPSDVGIYDYVV---VQEIIKEIAQYK 118
Query: 458 EV-SNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ +NA ++++ E D + + Q ++ M+ Y+ +C+LILCCE+ II +++ C
Sbjct: 119 QLDANAKHPFKVVLLSEADNLSRNAQAGLRRTMEKYSSNCRLILCCENSSRIIAPIRSRC 178
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN-- 569
+++ P E++ +L + E + + +IA + +NLR+A++ LE+ A N
Sbjct: 179 LCLRISAPTLSEVLSILQRNCLNEGLSVPSSQLQRIAQASNRNLRRALLLLESNTAANGG 238
Query: 570 YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ + + WE L + I+ +P L+ +RGK +LLA + +IL
Sbjct: 239 GGLKGEDIVLMDWERFLESIVGIIVTKQNPAALLEIRGKYYELLARLIPASVIL 292
>gi|239610553|gb|EEQ87540.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis ER-3]
Length = 354
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 19/243 (7%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL---------VPVASSAHH 427
G+ PH+L+ G SG+GK+ +A L E++G K +V + SS +H
Sbjct: 55 GDFPHLLVYGPSGAGKKTRIIATLRELFGPGVEKIKIDARVFQTSSNRKLEFNIVSSIYH 114
Query: 428 VELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA------MIVIYEVDKAAEHIQYLIK 481
+E+ + N + V+E+ +A T +V + ++VI E D Q ++
Sbjct: 115 LEITPSDVGNYDRVV---VQELLKEVAQTQQVDLSARQRFKVVVINEADHLTRDAQAALR 171
Query: 482 WIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM 541
M+ Y+ + +LIL +II +++ +++V P EI + L +KE + +
Sbjct: 172 RTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPTEAEICQALQVAEKKEGWAEAP 231
Query: 542 TFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI-PLGWEEVLIELAAEILADPSPK 600
+IA ++ +NLR+A++ LEA A N DD PI P WE ++ +A EI+A+ SP
Sbjct: 232 GLNKRIAKESGRNLRRALLMLEAIYAQNEKVTDDTPIPPPDWEALISLIADEIMAERSPA 291
Query: 601 RLV 603
R++
Sbjct: 292 RIL 294
>gi|261195362|ref|XP_002624085.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239587957|gb|EEQ70600.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis SLH14081]
Length = 354
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 19/243 (7%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL---------VPVASSAHH 427
G+ PH+L+ G SG+GK+ +A L E++G K +V + SS +H
Sbjct: 55 GDFPHLLVYGPSGAGKKTRIIATLKELFGPGVEKIKIDARVFQTSSNRKLEFNIVSSIYH 114
Query: 428 VELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA------MIVIYEVDKAAEHIQYLIK 481
+E+ + N + V+E+ +A T +V + ++VI E D Q ++
Sbjct: 115 LEITPSDVGNYDRVV---VQELLKEVAQTQQVDLSARQRFKVVVINEADHLTRDAQAALR 171
Query: 482 WIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM 541
M+ Y+ + +LIL +II +++ +++V P EI + L +KE + +
Sbjct: 172 RTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPTEAEICQALQVAEKKEGWAEAP 231
Query: 542 TFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI-PLGWEEVLIELAAEILADPSPK 600
+IA ++ +NLR+A++ LEA A N DD PI P WE ++ +A EI+A+ SP
Sbjct: 232 GLNKRIAKESGRNLRRALLMLEAIYAQNEKVTDDTPIPPPDWEALISLIADEIMAERSPA 291
Query: 601 RLV 603
R++
Sbjct: 292 RIL 294
>gi|50286125|ref|XP_445491.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524796|emb|CAG58402.1| unnamed protein product [Candida glabrata]
Length = 355
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 143/298 (47%), Gaps = 21/298 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DKH+P +L + + L L ++ + PH+LI G +GSGK+ MALL I+G
Sbjct: 3 LWVDKHRPKTLKTLSYNDDLTRFLSSLAMNPRDLPHLLIYGPNGSGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
+ K + V V SS +H+E+ ++ N + + L+KE+ +
Sbjct: 63 SQVYRLKIDVRRFVTPSNRKLELNVVSSPYHLEITPSDMGNNDRVVIQELLKEVAQMEQV 122
Query: 456 -----TPEVSNAM--IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
+ ++N ++I E + Q ++ M+ Y+ + +LI+ C+ II ++
Sbjct: 123 DFQDGSSGIANRFKCVIINEANSLTRDAQAALRRTMEKYSKNIRLIMLCDSMSSIISPIR 182
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKA 567
+ C +I+ P +I + L +A +E+ ++ K+A ++ N+R A++ LE+
Sbjct: 183 SRCLMIRSPAPQMKDITKTLKDVASEENVNIVDQVILDKVANESNGNMRLALLMLESMSL 242
Query: 568 LN-YPFADDQP-IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
N ++ P I W V+++LA +I + S LV R + LLA + K+IL
Sbjct: 243 SNEMQLKENTPVIKPDWMVVILKLANKIKKERSVSSLVECRAVLYDLLAHCIPAKVIL 300
>gi|50304249|ref|XP_452074.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641206|emb|CAH02467.1| KLLA0B12221p [Kluyveromyces lactis]
Length = 355
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 28/301 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P +L + L L + PH+L G +G+GK+ MALL EI+G
Sbjct: 3 LWVDKYRPKTLQSLSYNEELTNQLYSLTRQPQDLPHLLFYGPNGAGKKTRCMALLQEIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 SGVYKLKIDVRQFVTPSNRKLELNVVSSPYHLEITPSDIGNNDRVVIQELIKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E D Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEADSLTRDAQAALRRTMEKYSGNIRLIMLCDSMSSII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+K+ C +++V P E + +L KE +IA +K NLR +++ALE+
Sbjct: 179 APIKSRCLLVRVPSPSLQETVSILQDCCSKEKITAEGNCLERIANLSKGNLRMSLLALES 238
Query: 565 CKALN-YPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLI 622
N +D P+ W+ V+ ++A +IL + + LV R LLA + K I
Sbjct: 239 TSLQNELHLRNDTPLNRPDWQLVIHKMARKILKERTVNNLVECRSINYDLLAHCIPAKTI 298
Query: 623 L 623
+
Sbjct: 299 V 299
>gi|365982197|ref|XP_003667932.1| hypothetical protein NDAI_0A05340 [Naumovozyma dairenensis CBS 421]
gi|343766698|emb|CCD22689.1| hypothetical protein NDAI_0A05340 [Naumovozyma dairenensis CBS 421]
Length = 358
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 142/299 (47%), Gaps = 23/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P +L +LK L + PH+L+ G +GSG++ MALL I+G
Sbjct: 3 LWVDKYRPKTLKTLSHTESLTNVLKSLSHQPKDLPHLLMYGPNGSGRKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
+ K + V V SS +H+E+ ++ N + + L+KE+ +
Sbjct: 63 SGIYRLKIDIRQFVTASNKKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 456 TPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
+ SN ++I + + Q ++ M+ Y+ + +LI+ C+ II ++
Sbjct: 123 DFQDSNDGLAHRYKCVIINDANSLTRDAQAALRRTMEKYSRNIRLIMLCDSMSSIISPIR 182
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKA 567
+ C +I+V P+ EI+ +L ++A KE+ + + + IA ++ NLR A++ LE+ +
Sbjct: 183 SRCLMIRVPAPLNGEIVNILNEVASKENVKIENGSILNHIAKESNANLRVALLMLES-MS 241
Query: 568 LNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
LN P+ W V+++L +I D S L+ R + LLA + K IL
Sbjct: 242 LNNELNLKVNTPIIRPDWMVVILKLGNKIQKDKSVGCLIECRAILYDLLAHCIPAKTIL 300
>gi|323338653|gb|EGA79869.1| Rfc5p [Saccharomyces cerevisiae Vin13]
Length = 356
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + LK L + PH+L+ G +G+GK+ MALL I+G
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E + + Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +I+ P EI +L + E L + +IA + NLR +++ LE
Sbjct: 179 APIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ ALN A P+ W V+ +L +I+ + S L+ R + LLA +
Sbjct: 239 S-MALNNELALKSSSPIIKPDWIIVIHKLTXKIVKERSVNSLIECRAVLYDLLAHCIPAN 297
Query: 621 LIL 623
+IL
Sbjct: 298 IIL 300
>gi|365762051|gb|EHN03666.1| Rfc5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841849|gb|EJT44172.1| RFC5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 354
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 141/303 (46%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + LK L + PH+L+ G +G+GK+ MALL I+G
Sbjct: 3 LWVDKYRPKSLNALSHNDELTNFLKSLADQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 AGVYRLKIDVRQFVTSSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E + + Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMICDSMSPII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +I+ P +EI ++L + E +L + KIA ++ NLR +++ LE
Sbjct: 179 APIKSRCLLIRCPTPSDNEISKILSDVVTNERINLETKDILQKIARESNGNLRISLLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ ALN P+ W V+ +L +I+ + S L+ R + LLA +
Sbjct: 239 S-MALNNEMTLKSSSPIIKADWLIVIQKLTRKIVKERSVNSLIECRAVLYDLLAHCIPAN 297
Query: 621 LIL 623
+IL
Sbjct: 298 VIL 300
>gi|403221417|dbj|BAM39550.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 351
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 139/301 (46%), Gaps = 28/301 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIY 404
W DKH P +L+ F H+ +LL +LV G PH L G SGSGK++ +A L +++
Sbjct: 2 LWIDKHCPRNLSDFSSHKDVNELLLKLVSKSHGELPHFLFYGPSGSGKKSRMLATLRDVF 61
Query: 405 GDACWNEKWPTQVL-------VPVASSAHHVELNV-NLQANAKYALMGLVKEIRDNLAIT 456
G +K T VL V V S H+++ L +Y +V+++ NL+
Sbjct: 62 GTRV--DKIKTDVLTYKDSNEVIVCQSEAHIQIPCPELGTRDRY----IVQDVIRNLSSA 115
Query: 457 PEVSNA--------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
P SN + ++ + D + Q ++ M+ + ++ L I+ ++
Sbjct: 116 PSASNYFSKGPSYRVFLLEDADTLTQEAQAALRRTMETCVKNARMFLHVRQLSRIMPPLR 175
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM---TFAAKIATKAKQNLRKAIMALEAC 565
+ C ++V EI+++L I ED S + IA + +NLR++I+ LEA
Sbjct: 176 SRCLCVRVRSHTNAEIVDILRGICNAEDITPSQASDSMLMNIAESSNRNLRRSILTLEAV 235
Query: 566 KALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLV 625
+ + + + WE+ + ++ +L++ +P L VR +I LL + +IL
Sbjct: 236 AMGGFTL-ETKNFMMPWEKNINQIVQSVLSNQTPSTLSAVRSQIYDLLVCCIPGDIILET 294
Query: 626 M 626
M
Sbjct: 295 M 295
>gi|448079909|ref|XP_004194496.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
gi|359375918|emb|CCE86500.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
Length = 363
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 136/308 (44%), Gaps = 33/308 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H + LK L G+ PH+L+ G GSGK+ L+E+YG
Sbjct: 3 LWVDKYRPKKLDQLSYHNGLTENLKALASTGDFPHLLVYGPPGSGKKTRIYGTLYELYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K V SSAHH+E+ ++ N + + L+K++ +
Sbjct: 63 QVEKLKIDVNTFTTTSNRKLEFNVLSSAHHLEITPSDMGNNDRVVIQDLLKDVASVEQV- 121
Query: 457 PEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
+ SN+ +++I E D ++ Q ++ M+ Y+ + +LIL II
Sbjct: 122 -DFSNSAKSKSKHRFKVVIINEADSLSKDAQAALRRTMEKYSANIRLILVSNTTSGIIAP 180
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-------SMTFAAKIATKAKQNLRKAI 559
+K+ +++V P +I ++L IA+KE IA +++NLR+ +
Sbjct: 181 IKSRTLLVRVPAPSETDIADILSGIAKKEGLKFKPDTDNAKQELFRNIALHSEKNLRRTL 240
Query: 560 MALEACKALNYPFADDQP----IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
+ E + D+ + + WE ++ LA I+A+ S + R + +LL+
Sbjct: 241 LCFETLSMQSETINIDKNTLSLVSIDWEVIIANLAKSIVANKSVANIAKSRVVLYELLSH 300
Query: 616 FVHPKLIL 623
+ + IL
Sbjct: 301 CIPARTIL 308
>gi|363755746|ref|XP_003648088.1| hypothetical protein Ecym_7452 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892124|gb|AET41271.1| hypothetical protein Ecym_7452 [Eremothecium cymbalariae
DBVPG#7215]
Length = 356
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 138/301 (45%), Gaps = 27/301 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDG----NCPHILIKGQSGSGKRALAMALLHE 402
W DK++P SL+ H L K+L + PH+L G GSGK+ M+LL
Sbjct: 3 LWVDKYRPKSLSSL---SHSPILTKQLDALASSAKDLPHVLFYGPDGSGKKTRCMSLLAG 59
Query: 403 IYGDACWNEKWPTQVLVP----------VASSAHHVELN-VNLQANAKYALMGLVKEIRD 451
I+G + K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 60 IFGSGVFKMKIDARQFVMQSNNRKLELNVISSPYHLEITPSDMGNNDRVVIQELLKEVAQ 119
Query: 452 NLAITPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+ + ++ IVI E D Q ++ M+ Y+ + ++ + C+ +II
Sbjct: 120 MEQVDFQTTSDGLARRYKCIVINEADALTRDAQAALRRTMEKYSRNIRIFMLCDSMSNII 179
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+K+ C V++V P T E+ +++ + E S +IA + NLR A++ LE+
Sbjct: 180 APIKSRCLVVRVPAPQTLEMAKIMETVCMSEGVTASEQKLQEIAEFSNGNLRLALLTLES 239
Query: 565 CKALNYPFADDQPIPL--GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLI 622
N D + + W V+++LA +IL + S LV R + LL+ + P +I
Sbjct: 240 MCFQNDLKLTDSAVLIKPDWMVVILKLANKILKERSVGSLVECRAILYDLLSHCIPPNII 299
Query: 623 L 623
L
Sbjct: 300 L 300
>gi|401626895|gb|EJS44813.1| rfc5p [Saccharomyces arboricola H-6]
Length = 354
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + LK L + PHIL+ G +G+GK+ MALL I+G
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHILLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 SGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E + + Q ++ M+ Y+ + +LI+ C II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMICNSMSPII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +++ P EI ++L + E L + KIA ++ NLR +++ LE
Sbjct: 179 APIKSRCLLVRCPAPSDSEISKILSDVVTNERIHLETKDILQKIAYESNGNLRISLLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ ALN P+ W V+ +L +I+ + S L+ R + LLA +
Sbjct: 239 S-MALNNELTLKSSSPIIKPDWMIVIQKLTRKIVKERSVNSLIECRAVLYDLLAHCIPAN 297
Query: 621 LIL 623
+IL
Sbjct: 298 VIL 300
>gi|50513625|pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + LK L + PH+L+ G +G+GK+ MALL I+G
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E + + Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +I+ P EI +L + E L + +IA + NLR +++ LE
Sbjct: 179 APIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ ALN A P+ W V+ +L +I+ + S L+ R + LLA +
Sbjct: 239 S-MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPAN 297
Query: 621 LIL 623
+IL
Sbjct: 298 IIL 300
>gi|401408351|ref|XP_003883624.1| putative replication factor c [Neospora caninum Liverpool]
gi|325118041|emb|CBZ53592.1| putative replication factor c [Neospora caninum Liverpool]
Length = 403
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 32/310 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH P + H ++LL + + PH+L G +G+GK+ +AL I+G
Sbjct: 2 LWVDKHSPREIEELSIHPDVSRLLLKQAASPSLPHLLFYGPTGAGKKTRVLALARRIFGS 61
Query: 407 ACWNEKWPT------QVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAIT--- 456
K T V S+HH+ L+ + + ++K+I ++ ++
Sbjct: 62 GVDKVKVETFTDRESGTEATVCRSSHHILLSCQEFGLKDRAIVQSIIKDIAESTTLSGVS 121
Query: 457 -----PEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
P+ SN + + + D +E Q+ ++ ++ Y+ K + E +
Sbjct: 122 SFFAAPKASNVPSFKICIFQDADLLSEGAQHALRRTLEIYSSRLKFVFLVERLERFSAPL 181
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ---NLRKAIMALEA 564
K+ C ++V P E++ L I +E M A + T ++Q NLR+A +ALE
Sbjct: 182 KSRCFCVRVPLPSHREVVTYLRSICDREGLTPEMAPDALLQTISEQSGRNLRRAGLALEC 241
Query: 565 CKALNY----------PFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLA 614
N+ P + P PL WE + E A +P L RG + LLA
Sbjct: 242 IATHNFTAPLSSSLSIPRGEASPFPLPWERLCDEAAVCAFRQQNPVSLSECRGMLYDLLA 301
Query: 615 EFVHPKLILL 624
+ +LIL+
Sbjct: 302 VLIPGELILM 311
>gi|323310134|gb|EGA63327.1| Rfc5p [Saccharomyces cerevisiae FostersO]
Length = 317
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + LK L + PH+L+ G +G+GK+ MALL I+G
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E + + Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +I+ P EI +L + E L + +IA + NLR +++ LE
Sbjct: 179 APIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ ALN A P+ W V+ +L +I+ + S L+ R + LLA +
Sbjct: 239 S-MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPAN 297
Query: 621 LIL 623
+IL
Sbjct: 298 IIL 300
>gi|398364719|ref|NP_009644.3| replication factor C subunit 5 [Saccharomyces cerevisiae S288c]
gi|586518|sp|P38251.1|RFC5_YEAST RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5; AltName: Full=Activator 1 40 kDa subunit
gi|476048|emb|CAA55595.1| YBR0810 [Saccharomyces cerevisiae]
gi|536354|emb|CAA85036.1| RFC5 [Saccharomyces cerevisiae]
gi|841471|gb|AAC49065.1| Rfc5p [Saccharomyces cerevisiae]
gi|51013797|gb|AAT93192.1| YBR087W [Saccharomyces cerevisiae]
gi|151946482|gb|EDN64704.1| replication factor C subunit 5 [Saccharomyces cerevisiae YJM789]
gi|190408751|gb|EDV12016.1| replication factor C subunit 5 [Saccharomyces cerevisiae RM11-1a]
gi|207347704|gb|EDZ73792.1| YBR087Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274035|gb|EEU08949.1| Rfc5p [Saccharomyces cerevisiae JAY291]
gi|285810423|tpg|DAA07208.1| TPA: replication factor C subunit 5 [Saccharomyces cerevisiae
S288c]
gi|290878103|emb|CBK39162.1| Rfc5p [Saccharomyces cerevisiae EC1118]
gi|323305938|gb|EGA59673.1| Rfc5p [Saccharomyces cerevisiae FostersB]
gi|323334562|gb|EGA75936.1| Rfc5p [Saccharomyces cerevisiae AWRI796]
gi|323349712|gb|EGA83927.1| Rfc5p [Saccharomyces cerevisiae Lalvin QA23]
gi|349576467|dbj|GAA21638.1| K7_Rfc5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365767135|gb|EHN08623.1| Rfc5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392300928|gb|EIW12017.1| Rfc5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 354
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + LK L + PH+L+ G +G+GK+ MALL I+G
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E + + Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +I+ P EI +L + E L + +IA + NLR +++ LE
Sbjct: 179 APIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ ALN A P+ W V+ +L +I+ + S L+ R + LLA +
Sbjct: 239 S-MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPAN 297
Query: 621 LIL 623
+IL
Sbjct: 298 IIL 300
>gi|237833397|ref|XP_002365996.1| replication factor C, putative [Toxoplasma gondii ME49]
gi|211963660|gb|EEA98855.1| replication factor C, putative [Toxoplasma gondii ME49]
gi|221488458|gb|EEE26672.1| replication factor C, putative [Toxoplasma gondii GT1]
gi|221508964|gb|EEE34533.1| replication factor C, putative [Toxoplasma gondii VEG]
Length = 396
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 34/311 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH P + H ++LL + + PH+L G +G GK+ +AL+ I+GD
Sbjct: 2 LWVDKHAPREIEELSIHPEISRLLLKQAASASLPHLLFYGPTGGGKKTRVLALVRRIFGD 61
Query: 407 ACWNEKWPT------QVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAIT--- 456
A + T V S+HH+ L+ + + ++K+I ++ ++
Sbjct: 62 AVDKVRVETFTDRESGTEATVCRSSHHILLSCQEFGVKDRAIVQSIIKDIAESTTLSGVS 121
Query: 457 -----PEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
P+ S+ + + + D +E Q+ ++ ++ Y+ K + E +
Sbjct: 122 SFFAAPKASSVPPFKICIFQDADLLSESAQHALRRTLEIYSSRLKFVFLVERLERFSAPL 181
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM---TFAAKIATKAKQNLRKAIMALEA 564
K+ C ++V P + L + KE + I+ K+ +NLR+A +ALE
Sbjct: 182 KSRCFCVRVPLPSHRAVASFLRSLCDKEGLPPQVAPDALLQTISEKSARNLRRAGLALEC 241
Query: 565 C------------KALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKL 612
AL+ P + P PL WE + E+A SP+ L RG + L
Sbjct: 242 LATHNFTASLSPSTALSLPRGEASPFPLPWERLCDEIAVCAFRQQSPRALSECRGMLYDL 301
Query: 613 LAEFVHPKLIL 623
L+ + +L+L
Sbjct: 302 LSVLIPGELVL 312
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 21/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++PS ++ I H +KE++ +GN PH+L G G+GK +A+A+ E+YGD
Sbjct: 7 LWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--AMI 464
A W VL ELN A+ + + + +++++ P V +I
Sbjct: 67 A-----WRENVL----------ELN----ASDERGIAMIREKVKEFAKTMPTVKAPFRLI 107
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ YT S + IL IIE +++ C + + P +
Sbjct: 108 ILDEADNMTPDAQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAV 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L +IA KE ++ I ++ ++RKAI L+A +L
Sbjct: 168 LGRLREIASKEGVKVTDDALEAIWDVSQGDMRKAINTLQAAASLG 212
>gi|84997984|ref|XP_953713.1| replication factor C subunit [Theileria annulata]
gi|65304710|emb|CAI73035.1| replication factor C subunit, putative [Theileria annulata]
Length = 351
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 28/298 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELV--VDGNCPHILIKGQSGSGKRALAMALLHEIY 404
W DKH P +LN F H+ ++LL +LV G PH L G SG+GK++ +A L ++
Sbjct: 2 LWIDKHCPKNLNDFTSHKDLSELLLKLVNKSHGELPHFLFYGPSGAGKKSRILATLRSVF 61
Query: 405 GDACWNEKWPTQVL-------VPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAIT 456
G+ +K T VL V V S H+++ L +Y +V++I +L+
Sbjct: 62 GNKV--DKIKTDVLSYKDTSEVVVCQSEVHIQIPCQELGTRDRY----IVQDIIRSLSSA 115
Query: 457 PEVSNAM--------IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
P SN + + D + Q ++ M+ Y + ++ L I+ ++
Sbjct: 116 PSASNFFSKGPSYRAFLFEDADTLTQEAQAALRRTMETYIKNARMFLHVRQLSRIMPPLR 175
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT---FAAKIATKAKQNLRKAIMALEAC 565
+ C I+V EI+++L +I ED S IA +K+NLR++I+ LE
Sbjct: 176 SRCLCIRVRSHTNDEIVQILRKICNSEDITPSQASDQMLRNIAESSKRNLRRSILTLETI 235
Query: 566 KALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ + + WE+ + ++ +++ +P L VR +I +LL + LIL
Sbjct: 236 AMGGFTL-QTKNFMMPWEKNITQVVQSVVSSQTPSTLSAVRPQIYELLVCCIPGDLIL 292
>gi|448084401|ref|XP_004195594.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
gi|359377016|emb|CCE85399.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
Length = 363
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 135/308 (43%), Gaps = 33/308 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H + LK L G+ PH+L+ G GSGK+ L+E+YG
Sbjct: 3 LWVDKYRPKKLDQLSYHNGLTENLKALASTGDFPHLLVYGPPGSGKKTRIYGTLYELYGP 62
Query: 407 ACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAIT 456
K V SSAHH+E+ ++ N + + L+K++ +
Sbjct: 63 QVEKLKIDVNTFTTTSNRKLEFNVLSSAHHLEITPSDMGNNDRVVIQDLLKDVASVEQV- 121
Query: 457 PEVSNA----------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
+ SN+ +++I E D ++ Q ++ M+ Y+ + +LIL II
Sbjct: 122 -DFSNSTKSKSKHRFKVVIINEADSLSKDAQAALRRTMEKYSANIRLILVSNTTSGIIAP 180
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-------SMTFAAKIATKAKQNLRKAI 559
+K+ +++V P +I ++L I++KE IA A++NLR+ +
Sbjct: 181 IKSRTLLVRVPAPSETDIADILSGISKKEGLKFKPDTDNAKQELFRNIALHAERNLRRTL 240
Query: 560 MALEACKALNYPFADDQP----IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
+ E + D+ + + WE ++ LA I A+ S + R + +LL+
Sbjct: 241 LCFETLSMQSDTINIDKNTLSLVSIDWEVIISNLAKSIAANKSVANIAKSRVVLYELLSH 300
Query: 616 FVHPKLIL 623
+ + IL
Sbjct: 301 CIPARTIL 308
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 21/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++PS ++ I H +KE++ +GN PH+L G G+GK +A+A+ E+YGD
Sbjct: 7 LWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--AMI 464
A W VL ELN A+ + + + +++++ P V +I
Sbjct: 67 A-----WRENVL----------ELN----ASDERGIAMIREKVKEFAKTIPTVKAPFRLI 107
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ YT S + IL IIE +++ C + + P +
Sbjct: 108 ILDEADNMTPDAQQALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAV 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L IA +E ++ I ++ ++RKAI L+A +L
Sbjct: 168 LGRLRDIASREGVKVTDEALEAIWDISQGDMRKAINTLQAAASLG 212
>gi|156083977|ref|XP_001609472.1| replication factor C 38 kDa subunit [Babesia bovis T2Bo]
gi|154796723|gb|EDO05904.1| replication factor C 38 kDa subunit [Babesia bovis]
Length = 349
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 27/298 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELV--VDGNCPHILIKGQSGSGKRALAMALLHEIY 404
W DKH P L+ HR LL +LV G PH+L G SGSGK+ +A L ++
Sbjct: 2 LWIDKHCPKRLDELTSHRDVNALLTKLVEKSHGEIPHLLFYGPSGSGKKTRILATLRAVF 61
Query: 405 GDACWNEKWPTQVL--------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
G + +K T+++ V V S HH+++ + + +V++I L+ +
Sbjct: 62 GPSI--DKVKTEIISNVDTSSEVVVCQSDHHIQIPCSDLGSRDRV---IVQDIIRTLSAS 116
Query: 457 PEVSNAM-------IVIYE-VDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
P SN + ++E D + Q ++ M+ Y + ++IL I+ ++
Sbjct: 117 PSASNYFMKGPSFRVFLFEDADALSLPAQAALRRTMETYIKNARMILHVNQLSRIMLPLR 176
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMT---FAAKIATKAKQNLRKAIMALEAC 565
+ C I+V EI +L I + E+ + + +IAT + +NLR+AI+ LE
Sbjct: 177 SRCLCIRVGSHTIDEITTILRSICKIENVASAQSSDEVLRRIATSSGRNLRRAILTLETM 236
Query: 566 KALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
YP + L WE + ++ ++++ SP + +R ++ +LL + ++IL
Sbjct: 237 TMGGYP-GNTVDFLLPWERNVQQIVKYLMSNQSPSAVGGIRPQVYELLVCCIPGEIIL 293
>gi|323356056|gb|EGA87861.1| Rfc5p [Saccharomyces cerevisiae VL3]
Length = 354
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 139/304 (45%), Gaps = 33/304 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIY 404
W DK++P SLN + H E + D + PH+L+ G +G+GK+ MALL I+
Sbjct: 3 LWVDKYRPKSLNA-LSHNEELTNFLXSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61
Query: 405 GDACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI----- 449
G + K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 62 GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121
Query: 450 ------RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503
+D LA + ++I E + + Q ++ M+ Y+ + +LI+ C+ I
Sbjct: 122 VDFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177
Query: 504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMAL 562
I +K+ C +I+ P EI +L + E L + +IA + NLR +++ L
Sbjct: 178 IAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237
Query: 563 EACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHP 619
E+ ALN A P+ W V+ +L +I+ + S L+ R + LLA +
Sbjct: 238 ES-MALNNELALKSSSPIIKPDWIIVIHKLTXKIVKERSVNSLIECRAVLYDLLAHCIPA 296
Query: 620 KLIL 623
+IL
Sbjct: 297 NIIL 300
>gi|366988537|ref|XP_003674035.1| hypothetical protein NCAS_0A10960 [Naumovozyma castellii CBS 4309]
gi|342299898|emb|CCC67654.1| hypothetical protein NCAS_0A10960 [Naumovozyma castellii CBS 4309]
Length = 356
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 139/303 (45%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P +L LL L + PH+L G +GSGK+ M LL I+G
Sbjct: 3 LWVDKYRPKTLKTLSHTEPLTALLNSLSQQPKDLPHLLFYGPNGSGKKTRCMTLLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 SGVYRLKIDIREFVTPSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + +VI E + Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQESKDGLAHRYKC----VVINEANSLTRDAQAALRRTMEKYSRNIRLIMLCDSMSSII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+++ C +++V PV +EI+ +L + E +L + + +IA + NLR A++ LE
Sbjct: 179 SPIRSRCLMVRVPAPVNNEIVSILGNVVEMEKINLENGSILNQIARECNGNLRTALLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ +LN P+ W V+++L+ +I + + L+ R + LLA + K
Sbjct: 239 S-MSLNNEMQLKVGTPIVRPDWLVVILKLSNKIQREKTVGSLIECRAILYDLLAHCIPAK 297
Query: 621 LIL 623
IL
Sbjct: 298 TIL 300
>gi|299749385|ref|XP_001838721.2| DNA clamp loader [Coprinopsis cinerea okayama7#130]
gi|298408416|gb|EAU83080.2| DNA clamp loader [Coprinopsis cinerea okayama7#130]
Length = 314
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 28/271 (10%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL---------VPVASSAHH 427
G+ PH+L G SG+GK+ L +++G K +V + + S +H
Sbjct: 11 GDFPHMLFYGPSGAGKKTRISCTLKQLFGAGVEKLKIDQRVFLTPSKRKMEINIVQSNYH 70
Query: 428 VELNVNLQANAKYALMGLVKEIRDNLAITPEVS-NA-----MIVIYEVDKAAEHIQYLIK 481
+E+ + N + V+EI +A T +V NA ++VI E D + Q ++
Sbjct: 71 IEITPSEAGNYDRLI---VQEILKEIAQTQQVDLNAKQRFKVVVINEADSLSRDAQAALR 127
Query: 482 WIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSM 541
M+ Y + ++ILC +I +K+ C +I+V P E+ VL +AR+ FDL
Sbjct: 128 RTMEKYMSNMRIILCANSTSKLIAPIKSRCLLIRVAAPNEEEMATVLNYVARRAGFDLPP 187
Query: 542 TFAAKIATKAKQNLRKAIMALEACKA----LNYPFADDQPIPLGWEEVLIELAAEILADP 597
A +I + NLRKAI+ LEA K L P +P WE ++A I+ +
Sbjct: 188 EAAKEIIDDSGGNLRKAILVLEALKMQSPDLTGPLTIAKP---DWETYCHKVADLIVMEQ 244
Query: 598 SPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
SP + V I + + E V L VMH+
Sbjct: 245 SPAQ---VMATIAERVVEKVDESLKADVMHW 272
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ + + + LK V N PH+L G G GK A A+A+ HE++GD
Sbjct: 5 IWIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFGD 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
+ WNE + ELN + + + +V+ N A T + A +
Sbjct: 65 S-WNENF--------------TELNASDERG-----IDVVRTKIKNFAKTSPIGGADFKI 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ YT +C+ IL C IIE +++ C V + P
Sbjct: 105 IFLDEADALTSDAQSALRRTMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEP 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E + +A E L+ I A+ ++RKA+ AL+A +
Sbjct: 165 VKERIRYVADAEGIKLADDAIDAIGYVAQGDMRKALNALQAAAMFD 210
>gi|240275872|gb|EER39385.1| activator 1 38 kDa subunit [Ajellomyces capsulatus H143]
Length = 325
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 1/167 (0%)
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++VI E D Q ++ M+ Y+ + +LIL +II +++ +++V P
Sbjct: 51 VVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPSEA 110
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI-PLG 581
EI +VL +KE + + +IA ++ +NLR+A++ LEA A N DD PI P
Sbjct: 111 EICQVLKLAVKKESWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEKVTDDTPIPPPD 170
Query: 582 WEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628
WE ++ +A EI+AD SP R++ VR K+ LL + P IL + +
Sbjct: 171 WEALISLIADEIMADRSPGRILQVRAKLYDLLTHCIPPTTILRTLTF 217
>gi|410082151|ref|XP_003958654.1| hypothetical protein KAFR_0H01090 [Kazachstania africana CBS 2517]
gi|372465243|emb|CCF59519.1| hypothetical protein KAFR_0H01090 [Kazachstania africana CBS 2517]
Length = 360
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 23/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SL +LL L + PH+L+ G +GSGK+ MALL I+G
Sbjct: 3 LWVDKYRPKSLKTLSHSSDLTELLTSLSEHPRDLPHLLLYGPNGSGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
+ K + V V SS +H+E+ ++ N + + L+KEI +
Sbjct: 63 PGVYRLKIDIRQFVTASNRKLELNVVSSPYHIEITPSDMGNNDRIVIQELLKEIAQMEQV 122
Query: 456 TPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
E S ++I E + + Q ++ M+ Y+ + +LI+ C+ II +K
Sbjct: 123 DFENSKEGLAHRYKCVIINEANSLSRDAQAALRRTMEKYSKNIRLIMLCDSMSSIIAPIK 182
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEACKA 567
+ C +I+ P E++ +L +I +E+ L S IA +A NLR A + LE+ A
Sbjct: 183 SRCLLIRCPAPANDELVSILSRIVTEENVQLESGVILNNIAKEANGNLRVATLMLES-MA 241
Query: 568 LNYPF---ADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
L+ I W V+ +A +I + + LV R + LL+ + K IL
Sbjct: 242 LSNEMQLKTSTTIIKPDWIVVVTSMANKIQRERTVGCLVECRAVLYDLLSHCIPAKTIL 300
>gi|444315932|ref|XP_004178623.1| hypothetical protein TBLA_0B02620 [Tetrapisispora blattae CBS 6284]
gi|387511663|emb|CCH59104.1| hypothetical protein TBLA_0B02620 [Tetrapisispora blattae CBS 6284]
Length = 366
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 141/306 (46%), Gaps = 30/306 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELV-VDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + LL+ L + PH+L+ G +G GK+ M+LL I+G
Sbjct: 3 LWVDKYRPKSLNELSHNDDLTTLLQSLSSYHKDLPHLLLYGPNGVGKKTRCMSLLQSIFG 62
Query: 406 DACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
+ K ++ + V +S +H+E+ ++ N + + L+KEI +
Sbjct: 63 SNVYRLKIDIRNFTTPSNRKLELNVINSQYHIEITPSDMGNNDRIVIQELLKEIAQMEQV 122
Query: 456 TPEVSNA--------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501
+ S+ ++I E D + Q ++ M+ Y+ + +LI+
Sbjct: 123 DFQSSSGNGGAASTGLAHRFKCVIINEADCLSRDAQAALRRTMEKYSRNIRLIMISNSLS 182
Query: 502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIM 560
II +K+ C +I+ P E + +L +I E+ ++ S KI ++ N+R +++
Sbjct: 183 PIISPIKSRCLLIRCPSPSDEEHLALLKKIVDAENVNVESDDILKKIVKESNNNIRTSVL 242
Query: 561 ALEACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFV 617
LE+ AL+ F P+ W +I+L+ +I D S +V R I LLA +
Sbjct: 243 MLES-MALSNEFNLKSTSPIIKPDWLNTIIKLSMKIKKDRSVPCIVECRSIIYDLLAHCI 301
Query: 618 HPKLIL 623
PK+IL
Sbjct: 302 PPKIIL 307
>gi|294889964|ref|XP_002773015.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239877718|gb|EER04831.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 274
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 132/272 (48%), Gaps = 17/272 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
F D +P L+ H + L++L +CPH+L G SG GK LL ++G
Sbjct: 3 FLVDSERPHKLDELTFHPGLTKTLRKLAASKDCPHLLFYGPSGGGKITRIRCLLEAMFGP 62
Query: 407 AC------WNEKWPTQ---VLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLA 454
+ + PT+ V + V SA HVE+ +V ++ A + L+K++ +N
Sbjct: 63 GVEKTSTSFRQFKPTKSTTVDIQVVVSAFHVEVTPSDVGIRDAA--VIQQLIKQMAENPP 120
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ EV ++VI + Q ++ M+ Y + I E +I +++ C I
Sbjct: 121 VG-EVPYHVVVINDAHCLTRQAQAALRRTMEKYVSKIRFIFHAEALAPLIPPLRSRCLGI 179
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P E+ + +++I+++ D L+ +I ++ ++R A++ L+ + N +D
Sbjct: 180 RVPRPTQIELQQEMMEISKRHDLGLNSGLCTRIVEESNCDVRLALIRLDTLRMKNACLSD 239
Query: 575 -DQPI-PLGWEEVLIELAAEILADPSPKRLVM 604
+ P+ L W+ + ++A +I+ + SP+R+++
Sbjct: 240 ANAPMEALSWQVFVEDIAKDIVMEQSPRRMLV 271
>gi|195578467|ref|XP_002079087.1| GD22189 [Drosophila simulans]
gi|194191096|gb|EDX04672.1| GD22189 [Drosophila simulans]
Length = 227
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 12/205 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P L+ H+ +A+ L+ L + PH++ G SG+GK+ M LL E+YG
Sbjct: 3 LWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
Query: 407 ACWNEKWPT---------QVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDN--LA 454
+ T +V V SS +H+E+N + + ++ L+K++ +
Sbjct: 63 GVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I+ + +IVI E D+ + Q+ ++ M+ Y +C++I+ II ++++ C I
Sbjct: 123 ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGI 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDL 539
+V P EI+ +L ++E L
Sbjct: 183 RVAAPNETEIVSILQNTCKREGLAL 207
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + LKE V GN PH+L G G+GK +A+ L E+YGD
Sbjct: 5 FWFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGD 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
A W E + +ELN + + + +++E A T V A +
Sbjct: 65 A-WRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y ++ + IL IIE +++ C + + P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
++ L IA +E +S I + ++R+AI AL+ ++
Sbjct: 165 VLSRLRFIAEQEGVKISQEALDAIFDFTQGDMRRAITALQIASSMT 210
>gi|449018306|dbj|BAM81708.1| replication factor C subunit 3 [Cyanidioschyzon merolae strain 10D]
Length = 386
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 140/315 (44%), Gaps = 41/315 (13%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W D+ +P++ + H+ + L+ L + PH+L G +GSGKR LL E+YG
Sbjct: 17 LWVDRCRPTTFEACVVHKELNERLRRLSESPAHLPHLLFYGPAGSGKRTRVRLLLRELYG 76
Query: 406 DACWNEKW----------PTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLA 454
A + P + SSA+H+ELN ++ + + + ++KEI +
Sbjct: 77 IAVDHSHVEHRLVRVGDPPRSLEYTTVSSAYHIELNPSDVGYSDRLLVQAVIKEIAGS-- 134
Query: 455 ITPEVSNA----------------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCK 492
P +S+A ++V+++VD+ Q ++ M+ Y +C+
Sbjct: 135 -RPLLSSAEQDAMVEGGTSTETASKRLPYKVVVLHDVDRLTREAQQALRRTMEKYAQTCR 193
Query: 493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKI--ATK 550
L+L + ++E +++ C I+V P E+ VL Q+ ++ A + A +
Sbjct: 194 LVLIADSATRVLEPLRSRCLGIRVRAPSETELRTVLRQVWQRMVHSAESPPEALLDHAIR 253
Query: 551 AKQ-NLRKAIMALEACKALNYPFADDQPIPL-GWEEVLIELAAEILADPSPKRLVMVRGK 608
A NLR A+++LEA + +P W + E+A +I + +P L+ VR
Sbjct: 254 ASDGNLRSALLSLEASYWTSKAGRKGSALPEPDWRSICDEIADQIRKEQTPPSLLRVRAL 313
Query: 609 IQKLLAEFVHPKLIL 623
LL + +IL
Sbjct: 314 YYDLLTHCIPVDIIL 328
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 17/223 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + + LK+ V + N PH+L G G+GK LA L H++YGD
Sbjct: 15 LWAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYGD 74
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ +ELN + + + VKE + EV +I++
Sbjct: 75 NYRQ---------------YMLELNASDERGID-VIRSKVKEFART-RVAGEVPFKIILL 117
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ +M+ YT + + IL IIE +++ C V + P +++E
Sbjct: 118 DEADNMTADAQQALRRLMELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVE 177
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L IA KE+ + I ++ ++RKAI L+A AL
Sbjct: 178 RLKYIAEKENVKYNTEALETIHELSEGDMRKAINILQAASALG 220
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 26/244 (10%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
I++ V+EK P W +K++P L+ + H + LK G+ PH+L G G+GK +
Sbjct: 8 IREVKVLEK--P-WVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTS 64
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
A+AL E++G E W L ELN + + + +++E A
Sbjct: 65 AALALARELFG-----ENWRHNFL----------ELNASDERG-----INVIREKVKEFA 104
Query: 455 ITPEVSNA---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
T + A +I + E D + Q ++ M+ ++++ + IL C IIE +++ C
Sbjct: 105 RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRC 164
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+ + P +I + + IA +E +L+ I A+ +LR+AI L+A AL+
Sbjct: 165 AIFRFRPLNDEDIAKRIRYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKK 224
Query: 572 FADD 575
D+
Sbjct: 225 ITDE 228
>gi|123480785|ref|XP_001323411.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121906275|gb|EAY11188.1| hypothetical protein TVAG_498820 [Trichomonas vaginalis G3]
Length = 346
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 136/292 (46%), Gaps = 22/292 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+H+P +L+ + +LLK + + PH+L G GSGK+ +A L +++
Sbjct: 4 LWIDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVLAFLRKLFNA 63
Query: 407 ACWN--------EKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITP 457
+ E+ ++ V V SS H+E+ + N ++ + +K++ + +
Sbjct: 64 ELTHLASGFRTIEEGDKKIEVQVTSSDFHIEITPADAGMNDRHVISYFLKDVAAS-QVVG 122
Query: 458 EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVD 517
S ++VI E + ++ Q ++ M+ Y SC++IL + IIE V++ C VI+
Sbjct: 123 GFSIKVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLVIRTP 182
Query: 518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577
+ +I + ++A KE+F++S + ++ NLR+AI LE ++ Q
Sbjct: 183 RIPSADIATAVKEVASKENFEISDEQLTDLVNESIGNLRRAINLLEML-SMQKKGGSVQS 241
Query: 578 IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHYI 629
I WE EL +++ GK+Q + + L L++H +
Sbjct: 242 ILPEWERYTDELVQ-----------ILIEGKLQTETIKEIRVHLYELLVHCV 282
>gi|340382408|ref|XP_003389711.1| PREDICTED: replication factor C subunit 3-like, partial [Amphimedon
queenslandica]
Length = 165
Score = 85.9 bits (211), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP-LGW 582
I VL + KE + T A +IA K+++NLRKAI+ EAC+ YPF DDQ +P W
Sbjct: 1 ICSVLQYVCHKESLTIPDTLAKRIAEKSERNLRKAILLCEACRVQQYPFNDDQVVPDCEW 60
Query: 583 EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
E L E AA I+ + SPKRL+ VRG+ +LL + P +I
Sbjct: 61 EVFLRETAAMIITEQSPKRLLEVRGRYYELLTHCIPPDIIF 101
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 19/223 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L I H+ + L V GN PH+L G G GK A A+AL E+YG
Sbjct: 6 IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYG- 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
E W + + AS ++ + N++ A+ A +G E +I
Sbjct: 65 ----ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLG-------------EAKFKIIF 107
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ Y +C+ I+ C IIE +++ C V + P +I
Sbjct: 108 LDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDIT 167
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +IA+ E + + A+ ++R+AI AL++ +
Sbjct: 168 TGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI 210
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 26/244 (10%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
I++ V+EK P W +K++P L+ + H + LK V G+ PH+L G G GK
Sbjct: 5 IREVKVLEK--P-WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTT 61
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
A+AL E++G E W L ELN + + + +++E A
Sbjct: 62 AALALARELFG-----ENWRHNFL----------ELNASDERG-----INVIREKVKEFA 101
Query: 455 ITPEVSNA---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
T + A +I + E D + Q ++ M+ ++ + + IL C IIE +++ C
Sbjct: 102 RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+ + P +I + L IA E +L+ I A+ ++R+AI L+A AL+
Sbjct: 162 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK 221
Query: 572 FADD 575
D+
Sbjct: 222 ITDE 225
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + +G+++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----IGVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P H
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E L +IAR E +L I ++ ++RKAI L+ A++
Sbjct: 165 MAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVS 210
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 23/231 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + H + LK V G+ PH+L G G+GK A+AL E++G
Sbjct: 15 WVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFG-- 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
E W L ELN + + + +++E A T + A +I
Sbjct: 73 ---ENWRHNFL----------ELNASDERG-----INVIREKVKEFARTKPIGGASFKII 114
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D + Q ++ M+ ++++ + IL IIE +++ C + + P ++
Sbjct: 115 FLDEADALTQDAQQALRRTMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDV 174
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
+ L IA +E +L+ I A+ +LR+AI L+A AL+ D+
Sbjct: 175 AKRLKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKITDE 225
>gi|440291402|gb|ELP84671.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 336
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 37/291 (12%)
Query: 350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACW 409
+K+QP + +LL + N PHILI G SGSG+ + L EIYG+
Sbjct: 9 NKYQPRNFQMLTHQSANNELLMNMTRGDNPPHILIHGSSGSGRYTRVLLFLREIYGNDVL 68
Query: 410 N---EKWPT------QVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
N E++ ++ + V SS HHVE N ++ GL RD L + +
Sbjct: 69 NISEERYKVELDNGNEIEITVRSSLHHVEFNP--------SVFGL----RDRLVLQWLID 116
Query: 461 NA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+VI + DK Q+ I+ M+ T S + I E+ ++ +++
Sbjct: 117 QTKVGPLKKTLVIPQADKLTRDAQFAIRRAME--TGSWRYIFITENVSSVMRPLRSRFLD 174
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V+ P E++ +L I E+F++S + I N R ++M+ NY
Sbjct: 175 IRVESPTQPELIALLKYIRATENFEVSDSRIESIVNANVGNFRTSLMSFFVYTVANY--- 231
Query: 574 DDQPIPLGWEEVLIELAAEILADPSPKRLV-MVRGKIQKLLAEFVHPKLIL 623
+ +P+ W+ E+ I+ S + +R K+ +L+ +HP L+L
Sbjct: 232 ETKPV---WKTTCEEIIRTIVLSQSVDLISNFIRPKLSQLIDLGIHPSLVL 279
>gi|303391058|ref|XP_003073759.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303302907|gb|ADM12399.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 354
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 145/298 (48%), Gaps = 21/298 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P+S + + + LLK ++ PH+++ G+SG GK+ + L++ +YG
Sbjct: 2 IWIEKYRPTSFDKVVGRDKISSLLKSYTLE-TIPHMILHGKSGHGKKTTLLCLINHLYGG 60
Query: 407 ACWNEKWPTQVL-------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
+ +VL V S +VE++ + + K + ++KE+ I
Sbjct: 61 NSEPKIRTVEVLSGTKKIEVSYMESDEYVEISPSQYGHHDKAVIQNIIKEMGQTKPILSM 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
+S A +IVI ++ + Q ++ ++ Y++ +++L C + +IE +++ C
Sbjct: 121 LSRAKRTPIKLIVITSAEELSLEAQAALRRTIEMYSNVLRVVLMCNELSRLIEPIRSRCF 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA-CKALN-- 569
+++ +IM + +I KE++ + +I +++ N+R+A+ LE C +N
Sbjct: 181 FLRIPGFSDEDIMSNMRRILEKENYTVPEETLEEICRESEGNMRRALCILELFCFNMNEK 240
Query: 570 ---YPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
P + + + L WE + +A I +P+ + LV +R + LL + P+ IL+
Sbjct: 241 EAKRPKNNCKAMKLDWEIEVGSMAGVIKRNPTSEGLVEIRKSLYALLNTCISPRTILI 298
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 26/244 (10%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
+Q+ ++EK P W +K++P L + H + LK V G+ PH+L G G GK
Sbjct: 5 VQEVKILEK--P-WVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTT 61
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
A+AL E++G E W L ELN + + + +++E A
Sbjct: 62 AALALARELFG-----EHWRHNFL----------ELNASDERG-----INVIREKVKEFA 101
Query: 455 ITPEVSNA---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
T + A +I + E D + Q ++ M+ ++ + + IL C IIE +++ C
Sbjct: 102 RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRC 161
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+ + P ++I + + IA E +L+ + A+ +LR+AI L+A AL+
Sbjct: 162 AIFRFRPLNDNDIAKRIKYIAENEGLELTEDGLQALLYVAEGDLRRAINVLQAAAALDRK 221
Query: 572 FADD 575
D+
Sbjct: 222 ITDE 225
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YGD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 76 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 115
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 116 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 175
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + IA +ED +L+ + A ++RKAI L+A
Sbjct: 176 EEIRNIAAQEDIELTEDGLDALVYAADGDMRKAINGLQAA 215
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YGD
Sbjct: 36 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 95
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 96 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 135
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 136 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 195
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + IA +ED +L+ + A ++RKAI L+A
Sbjct: 196 EEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 235
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + LKE V GN PH+L G G+GK +A+ L E+YGD
Sbjct: 7 FWFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
A W E + +ELN + + + +++E A T V A +
Sbjct: 67 A-WRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 106
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y ++ + IL II+ + + C V + PP+ E
Sbjct: 107 VILDEADNMTSDAQQALRRIMEMYANTTRFILLANYVSRIIDPIISRCAVFRF-PPMPKE 165
Query: 524 IM-EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+M + L IA++E ++ I ++ ++R+AI L+ A
Sbjct: 166 LMAKRLAYIAKQEGITVTEDGIDAIYEISQGDMRRAINLLQMAAA 210
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YGD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 76 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 115
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 116 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 175
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + IA +ED +L+ + A ++RKAI L+A
Sbjct: 176 EEIRNIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 215
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YGD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 76 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 115
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 116 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 175
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + IA +ED +L+ + A ++RKAI L+A
Sbjct: 176 EEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 215
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + H + LK+ + + PH+L G +G GK A A+ E+Y
Sbjct: 11 REIWIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVY 70
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS---- 460
GD W E + +ELN + Q + +RD + S
Sbjct: 71 GDD-WRENF--------------LELNASDQRG--------IDVVRDRIKSFARASFGGY 107
Query: 461 -NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+ +I + E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 108 DHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPL 167
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E + IA E +L+ + A ++RKAI L+A +
Sbjct: 168 GDAAVDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAVMG 217
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YGD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 76 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 115
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 116 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 175
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + IA +ED +L+ + A ++RKAI L+A
Sbjct: 176 EEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 215
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 21/223 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + R LK+ V + N PH+L G SG+GK A+AL+H++YGD
Sbjct: 9 LWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYGD 68
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD--NLAITPEVSNAMI 464
++VE + L A+ + + + ++++ I V ++
Sbjct: 69 -------------------NYVEYFLELNASDERGIDVIRNKVKEFARTVIPSNVPFKVV 109
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ YT++ + IL C IIE +++ + + P ++
Sbjct: 110 LLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDV 169
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L+ IA+ E + I ++RK+I L+A A
Sbjct: 170 VNRLVYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASA 212
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 24/231 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + +H LK+ V P++L G +G GK +A+AL EI G
Sbjct: 5 WTEKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
E W L AS A ++ + EI++ + P NA ++
Sbjct: 63 ---EYWQQNFLELNASDARGID--------------TVRTEIKNFCRLRP--INAPFRIV 103
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ EVD Q ++ M+ Y ++ IL C IIE V++ C V + P + +I
Sbjct: 104 FLDEVDNMTRDAQQALRREMEMYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDI 163
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
++ L I KE+ D I A+ +LRKAI L+A AL+ +D
Sbjct: 164 IKRLKYICEKENVDYEEKALDAIVYFAEGDLRKAINILQAAAALDKTITED 214
>gi|242205746|ref|XP_002468730.1| predicted protein [Postia placenta Mad-698-R]
gi|220732115|gb|EED85953.1| predicted protein [Postia placenta Mad-698-R]
Length = 192
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DKH+P +L+ H + L+ L G+ PH+L G SG+GK+ L E+YG
Sbjct: 3 LWVDKHRPRTLDDLHYHESLSARLRALAALGDFPHMLFYGPSGAGKKTRIACTLRELYGK 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
K +V V V S H+E+ + N + + L+KEI +
Sbjct: 63 GAEKLKIDQRVFMTPSRRKLDVNVVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQQVD 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
++ + ++VI E D + Q ++ M+ Y + ++ILC +I +K+ C ++
Sbjct: 123 LSAKQRFKVVVINEADSLSRDAQAALRRTMEKYMTNLRIILCANSTSRLIAPIKSRCLLV 182
Query: 515 KVDPPVTHEI 524
+V P T E+
Sbjct: 183 RVAAPTTEEV 192
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 17/223 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + + LK+ V + N PH+L G G+GK A+AL H++YG
Sbjct: 8 LWAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYG- 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
EK+ +L AS +++ + VKE + P V ++++
Sbjct: 67 ----EKYRQYILELNASDERGIDV-----------IRTKVKEFARS-RTPPTVPFKLVIL 110
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ +M+ Y+ + + IL IIE V++ C + P +++E
Sbjct: 111 DEADNMTADAQQALRRLMEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIE 170
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L I +KE +I ++ ++RKAI L+A AL
Sbjct: 171 RLKYICQKEGVQCEEDALEEIYNISEGDMRKAINILQAAAALG 213
>gi|403217005|emb|CCK71500.1| hypothetical protein KNAG_0H00850 [Kazachstania naganishii CBS
8797]
Length = 357
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 23/299 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P +L LL L + PH+L+ G +G+GK+ M LL I+G
Sbjct: 3 LWVDKYRPRTLKQLNHSDELTHLLTSLQEQPRDLPHLLLYGPNGAGKKTRCMCLLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAI 455
+ K + V V SS +H+E+ ++ N + + L+KE+ +
Sbjct: 63 GGVYRLKIDVRHFVTPSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 456 TPEVSN-------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
E S +VI E Q ++ M+ Y+ + +LI+ C+ II ++
Sbjct: 123 DFENSKDGIAHRYKCVVINEAHSLTRDAQAALRRTMEKYSRNIRLIMICDSMSPIIAPIR 182
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALEA--- 564
+ C +I+ P E +++L ++A KE+ + S + KI ++ NLR A + LE+
Sbjct: 183 SRCMLIRCPAPTDDETIKILAEVASKENVKVESGSVFQKIVEQSSGNLRVATLMLESMSL 242
Query: 565 CKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
C + + P W V+ + ++ + + LV R + LL+ + K IL
Sbjct: 243 CNEMQLKMSTPILKP-DWMVVISNIGVKVTRERNVACLVECRSILYDLLSHCIPAKTIL 300
>gi|294938321|ref|XP_002782103.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239893514|gb|EER13898.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 361
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 29/295 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
F D +P++L+ H Q L+ L + PH+L G +G GK LL EI+G
Sbjct: 14 FLIDSERPTTLDELTYHDSITQQLRGLARRPDLPHLLFYGPTGGGKMTRIQCLLREIFGP 73
Query: 407 ACW-------NEKWPTQVLVPVASSAHHVELNVNLQANAK--YALMGLVKEIRDNLAITP 457
A E+ +VL S +H+E+ +A + + L+KE+ +
Sbjct: 74 AVTKVVVVVAEEQSGGRVLY----SNYHLEVTPT-EAGTRDVVVIQHLIKEMAQAPPLGG 128
Query: 458 EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVD 517
+V ++V+ + + Q ++ M+ Y K+ + +I +++ C I+V
Sbjct: 129 DVPFRVVVVNDAHNLSRSAQAGLRRTMEKYVGVLKVFFHADSLASLIPPLRSRCMSIRVP 188
Query: 518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA---------- 567
P T + L ++ K +++ A IAT+++ +LR +M L+A A
Sbjct: 189 RPTTEVVKVELERVEAKMGVEMNPHLATIIATESRGDLRYGLMQLDAISAQNGGSHALRN 248
Query: 568 LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLI 622
N P A L W+ V+ ++ +IL + +PK+L +R K+ LL + P I
Sbjct: 249 ANTPLAR-----LPWKVVVEDIVEDILTEQTPKQLKAIREKLYGLLEVHIPPSEI 298
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L + + L+ + N PH+L G G GK A A+++ E++GD
Sbjct: 5 IWIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGD 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + ELN + + + +V+ N A T + A +
Sbjct: 65 D-WRENF--------------TELNASDERG-----IDVVRTKIKNFAKTSPIGGADFKI 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ YT++C+ IL C IIE +++ C V + P
Sbjct: 105 IFLDEADALTPDAQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I + IA KE D++ I A+ ++RKAI A++A +
Sbjct: 165 IGKRCRHIAEKEGLDIADDGIEAIKYVAEGDMRKAINAVQAASMFD 210
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + L V + PH+L G G GK A+AL ++YGD
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L I+ KE+ +L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YGD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 76 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 115
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 116 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 175
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ + IA +ED +L+ + A ++RKAI L+A
Sbjct: 176 DEIRNIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 215
>gi|428673452|gb|EKX74365.1| replication factor C subunit 5, putative [Babesia equi]
Length = 351
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 26/297 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELV--VDGNCPHILIKGQSGSGKRALAMALLHEIY 404
W DKH P L+ H+ +LL +LV G PH L G SG+GK+ +A L ++
Sbjct: 2 LWIDKHCPKHLHELTSHKDVNELLIKLVNKSHGELPHFLFYGPSGAGKKTRILATLRSVF 61
Query: 405 GDACWNEKWPTQVL-------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
G +K T VL + V S H+++ +++++ NL+ P
Sbjct: 62 GAKV--DKVKTDVLSYKDSNEIIVCQSESHIQIPCPELGTRDRV---IIQDVIRNLSSAP 116
Query: 458 EVSNAM-------IVIYE-VDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
SN + ++E D + Q ++ M+ Y + ++ L I+ +++
Sbjct: 117 SASNYFTKGPSYRVFLFEDADSLSHEAQAALRRTMETYIKNARMFLHVRQLSRIMPPLRS 176
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDF---DLSMTFAAKIATKAKQNLRKAIMALEACK 566
C I++ EI+++L +I E+ S + IA + +NLR++I+ LEA
Sbjct: 177 RCLCIRIRSHTPQEILDILREICNAENITPGQASDSMLLNIAESSNRNLRRSILMLEAVA 236
Query: 567 ALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ + + + WE + ++ L+ +P L +R +I +LL + ++IL
Sbjct: 237 MGGFTL-ETKNFMMPWERNIKQIVDSALSSQTPSTLSSLRPQIYELLVCCIPGEIIL 292
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 28/240 (11%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
+ +A ++ R W +K++P +L+ + H + LK+ + + PH+L G +G+GK
Sbjct: 1 MSEAAAEDRGREIWIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTT 60
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
++A+ EIYGD W E + +ELN + Q + +RD +
Sbjct: 61 SSIAVAKEIYGDD-WRENF--------------LELNASDQRG--------IDVVRDRIK 97
Query: 455 ITPEVS-----NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
S + +I + E D Q ++ M+ ++D+ + IL C II+ +++
Sbjct: 98 SFARASFGGYDHRVIFLDEADALTSEAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQS 157
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
C V + P I E + IA E +++ + A ++RKAI L+A +
Sbjct: 158 RCAVFRFSPLGEAAIEEQIEAIAEAEGIEITDDGMDALVYAAAGDMRKAINGLQAAAVVG 217
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P H
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E L IA+ E ++ I ++ ++RKAI L+ A N
Sbjct: 165 MAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATN 210
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 17/221 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + + + LK+ V + N PH+L G G+GK A+AL+ ++YG+
Sbjct: 6 LWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGN 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ +ELN + + + VKE +A + V +I++
Sbjct: 66 NY---------------RQYFLELNASDERGID-VIRNKVKEFARTVA-SNNVPFKVILL 108
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ YT++ + IL C IIE +++ + + P +++
Sbjct: 109 DEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVN 168
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
LIQIA+ E + I + ++RKAI ++A A
Sbjct: 169 RLIQIAKNEKVEFDPKGIETIFDITQGDMRKAINVIQAASA 209
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 23/231 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + H + LK V G+ PH+L G G GK A+ L E++G
Sbjct: 15 WVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELFG-- 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
E W L ELN + + + +++E A T + A +I
Sbjct: 73 ---EHWRHNFL----------ELNASDERG-----INVIREKVKEFARTKPIGGASFKII 114
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D + Q ++ +M+ ++++ + IL C IIE +++ C + + P +I
Sbjct: 115 FLDEADALTQDAQQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDI 174
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
+ + IA E +L+ + A+ +LR+AI L+A AL+ D+
Sbjct: 175 AKRIRFIAENEGLELTEEGLQALLYIAEGDLRRAINVLQAAAALDTKITDE 225
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YG+
Sbjct: 98 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 157
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 158 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 197
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 198 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 257
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + IA +ED +L+ + A ++RKAI L+A
Sbjct: 258 EEIRNIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 297
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ + + LK V N PH+L G G GK A A++++ E++G
Sbjct: 50 IWIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFG- 108
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
E+W + +ELN A+ + + + +++D I P + NA +
Sbjct: 109 ----EEW----------RGNFIELN----ASDERGIDVVRHKVKDFARIAP-LGNAEFKV 149
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ Y+ C+ +L C IIE +++ C V +
Sbjct: 150 IFLDEADALTNDAQSALRRTMERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEA 209
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ E + IA E ++ I A+ ++RKAI AL+A +
Sbjct: 210 VSERMKTIAEAEGVKVTPEGMRAIVYVARGDMRKAINALQAASLM 254
>gi|399217573|emb|CCF74460.1| unnamed protein product [Babesia microti strain RI]
Length = 346
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 129/283 (45%), Gaps = 17/283 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK+ P ++ G CHR ++ +L + PH+++ G SGSGK+A M LL EI+G
Sbjct: 2 LWIDKYAPRTIAGLDCHREINEVFTQLCKSSDIPHLILYGPSGSGKKARIMVLLREIFGA 61
Query: 407 ACWNEKWP------TQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEV 459
+ K T + V+ S H + N L + + +++ + + +
Sbjct: 62 KADHIKVETLTDKNTNTEITVSQSQCHTNIMCNDLGTRDRVIVQNIIRSLCASSFTSSFF 121
Query: 460 SNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
S + V+++ D +E Q ++ ++ + + ++ + ++ I+ +K+ C I+
Sbjct: 122 SKGPTFRVFVLHDADFLSEAAQAALRRTLEKHIRNARVFMHVKELSRIMPPLKSRCLCIR 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSM---TFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+ P E++ VL I E+ S +I + +NLR++I+ LE A N F
Sbjct: 182 LGLPRKEEVVAVLRNICTYENISTSQADNALLERICDASDRNLRRSILTLETI-ATN-GF 239
Query: 573 ADDQP-IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLA 614
D + L WE + +A I + + L +R K+ +L
Sbjct: 240 VDPMTSLTLPWERCIKSIAEGIATKQTVQNLAALRTKVYELFV 282
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ I + LK V GN PH+L G G GK A A+AL +++GD
Sbjct: 17 WTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKDMFGDT 76
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
N + ELN + + + +V+ N A T + +A +I
Sbjct: 77 WQN---------------NFTELNASDERG-----IDVVRNNIKNFARTAPLGDARFKII 116
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ YT +C+ I+ C IIE +++ C V + P +I
Sbjct: 117 FLDEADALTSDAQSALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDI 176
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +I + E ++ I A+ ++R+A+ AL++ ++
Sbjct: 177 ETMARRIEKGEGIKITKDGLDAIIYVARGDMRRAVNALQSASTVS 221
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 17/221 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + R LK+ V + N PH+L G G+GK A+AL+H++YGD
Sbjct: 9 LWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ + +ELN + + + VKE + I ++ ++++
Sbjct: 69 NY---------------TEYFLELNASDERGID-VIRNKVKEFARTV-IPGDIPFKVVLL 111
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ YT++ + IL C IIE +++ + + P +++
Sbjct: 112 DEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVN 171
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
LI IA+ E + I ++RK+I L+A A
Sbjct: 172 RLIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASA 212
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + R LK+ V + N PH+L G G+GK A+AL+H++YGD
Sbjct: 9 LWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD--NLAITPEVSNAMI 464
++VE + L A+ + + + ++++ I V ++
Sbjct: 69 -------------------NYVEYFLELNASDERGIDVIRNKVKEFARTVIPSNVPFKVV 109
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ YT++ + IL C IIE +++ + + P ++
Sbjct: 110 LLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDV 169
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L+ IA+ E + I ++RK+I L+A A
Sbjct: 170 VNRLVYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASA 212
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 114/250 (45%), Gaps = 31/250 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + DGNCPHI+I G G GK + L H + GDA
Sbjct: 23 WVEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISGAPGIGKTTSILCLAHALLGDA 82
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + AN K L P + +I
Sbjct: 83 -----YKEGVLELNASDERGIDVVRNKIKTFANTKVTL--------------PAGRHKII 123
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y+++ + L C + IIE +++ C +++ E+
Sbjct: 124 ILDEADSMTAGAQQALRRTMEIYSNTTRFALACNNSSKIIEPIQSRCAILRYGKLKDQEV 183
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
++ L++IA E+ + A + ++ ++R+AI L++ + + F DQ
Sbjct: 184 LKRLVEIATAENVKYAEDGLAALIFTSEGDMRQAINNLQSTVS-GFGFVSAESVFKVCDQ 242
Query: 577 PIPLGWEEVL 586
P P+ +++L
Sbjct: 243 PHPVVIQKLL 252
>gi|348583113|ref|XP_003477319.1| PREDICTED: replication factor C subunit 3-like [Cavia porcellus]
Length = 288
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
D V I VL + +KE L A +IA K+ +NLRKA++ EAC+ YPF DQ
Sbjct: 117 DFKVNDMICHVLSTVCKKEGLSLPSQLAQRIAEKSCRNLRKALLMCEACRVQQYPFTADQ 176
Query: 577 PIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 177 EIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 224
>gi|76154829|gb|AAX26239.2| SJCHGC08481 protein [Schistosoma japonicum]
Length = 193
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 94/179 (52%), Gaps = 14/179 (7%)
Query: 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW-------PT 415
H++ A+ LK+L+ + PH+L+ G SG+GKR M +L E+YG + P+
Sbjct: 4 HKNYAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELYGSGVDKLRMEHHTFTNPS 63
Query: 416 QVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA------MIVIYEV 469
V +++ + + L VN Y + +++E+ ++A T ++ + ++V++E
Sbjct: 64 NKKVNLSTVSSNFHLEVNPSDVGIYDRI-VIQELIKSMASTAQLDSGQQKDFKVVVLHEA 122
Query: 470 DKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVL 528
D Q+ ++ M+ Y +C+LIL E II + ++ C I+V P T EI+E+L
Sbjct: 123 DHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCLPIRVSAPSTDEIVEIL 181
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 124/277 (44%), Gaps = 35/277 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H LK V +GN P+++ G +G GK ++AL E+ G
Sbjct: 31 WVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLG-- 88
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS A ++ N +++ + +G +P +I +
Sbjct: 89 ---EYWRQNFLELNASDARGIDTVRNDIKSFCRLKAVG-----------SP---FRIIFL 131
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P H+I++
Sbjct: 132 DEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGHQIIK 191
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL 586
L IA+ E + + I A+ ++R+A+ L+A + EEV
Sbjct: 192 RLEYIAQAEGLKIDIAAIESIVYFAEGDMRRAVNILQASSS-------------AGEEVT 238
Query: 587 IELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
E E+++ PK + + K L +F+ + +L
Sbjct: 239 EESVDEVVSKAKPKDVKKIVNK--ALDGDFIGARELL 273
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 19/222 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++PS ++ I + +K+ + GN PH+L G G+GK +A+A+ E+YGD
Sbjct: 7 IWVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHV-ELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
A W VL AS + + ++ A+ A MG + +++
Sbjct: 67 A-----WRENVLELNASDERGITTIRERVKEFARTAPMG-------------KAPYKLVI 108
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ +M+ Y + + IL II+ +++ C + + P ++
Sbjct: 109 LDEADNMTSDAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVL 168
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L +IA KE ++ I ++ ++RKAI L+A A
Sbjct: 169 GRLREIASKEGVKVTNEALEAIWDVSQGDMRKAINTLQAAAA 210
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + R LK+ V + N PH+L G G+GK A+AL+H++YGD
Sbjct: 9 LWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD--NLAITPEVSNAMI 464
++VE + L A+ + + + ++++ I V ++
Sbjct: 69 -------------------NYVEYFLELNASDERGIDVIRNKVKEFARTVIPGNVPFKVV 109
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ YT++ + IL C IIE +++ + + P ++
Sbjct: 110 LLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDV 169
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L+ IA+ E + I ++RK+I L+A A
Sbjct: 170 VNRLVYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASA 212
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 31/256 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + + + LK V + N PH+L G G+GK A+AL+H++YGD
Sbjct: 6 LWAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ Q + + +S E +++ N VKE + ++ V +I++
Sbjct: 66 SY------EQFFLELNASD---ERGIDVIRNK-------VKEFARTM-VSSSVPFKVILL 108
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ YT+S + IL C II+ +++ + + P +++
Sbjct: 109 DEADNMTADAQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVS 168
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL 586
L IA++E + I ++RKAI L+A A + +V
Sbjct: 169 RLEFIAKEEKVEYDEKALETIYDVTMGDMRKAINTLQAASA--------------YGKVT 214
Query: 587 IELAAEILADPSPKRL 602
IE ++L PK +
Sbjct: 215 IETVFKVLGLAQPKEV 230
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 23/229 (10%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
L W +K++P SL+ + +H + LK+ V N PH+L G G+GK A AL H++
Sbjct: 5 LEMLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDL 64
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT---PEVS 460
+G+ + +ELN + + + +++E A + PE+
Sbjct: 65 FGENY---------------RQYMLELNASDERG-----INVIREKVKEFARSRTPPEIP 104
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ +M+ Y+ + IL II+ +++ C + P
Sbjct: 105 FKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLS 164
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+++E L IA E D I ++ ++RKAI L+A L
Sbjct: 165 KQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLG 213
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 29/237 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L + H + L+ V + PH+L G +G GK AMA+ E+YGD
Sbjct: 14 IWIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYGD 73
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---- 462
W E + +ELN + + + +RD + S
Sbjct: 74 D-WRENF--------------LELNASDERG--------IDVVRDRIKDFARTSFGGYDY 110
Query: 463 -MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+I + E D Q ++ M+ + ++ + IL C II+ +++ C V + P
Sbjct: 111 RIIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAE 170
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ E + Q+A +E +++ + A ++RKA+ L+A A DD+ +
Sbjct: 171 EAVGEYVRQVAEREGIEVTDDGVDALVYAADGDMRKALNGLQAA-ATTEGAVDDEAV 226
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 31/250 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + DGNCPHI+I G G GK + L H + GD+
Sbjct: 29 WVEKYRPIILDDITGNVETIERLKVIARDGNCPHIIISGAPGIGKTTSILCLAHALLGDS 88
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + AN K L P + +I
Sbjct: 89 -----YKEGVLELNASDERGIDVVRNKIKTFANTKVTL--------------PPGRHKII 129
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y +S + L C IIE +++ C +++ EI
Sbjct: 130 ILDEADSMTSGAQQALRRTMEIYANSTRFALACNFSSKIIEPIQSRCAILRYGKLSDQEI 189
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
++ L++I E+ + A I A+ ++R+AI L++ + + F DQ
Sbjct: 190 LKRLVEICDAENVKYANEGLAAIIFTAEGDMRQAINNLQSTVS-GFEFVSSEAVFKVCDQ 248
Query: 577 PIPLGWEEVL 586
P P+ +++L
Sbjct: 249 PHPIVIKQLL 258
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + + + LK V D N PH+L G G+GK A+AL+H++YGD
Sbjct: 8 LWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGD 67
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ +ELN + + + VKE +A V ++++
Sbjct: 68 NY---------------RQYFLELNASDERGID-VIRNKVKEFARTVA-GGNVPFKVVLL 110
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ YT++ + IL C IIE +++ + + P +++
Sbjct: 111 DEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVA 170
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L IA+ E + I + ++RKAI L+A
Sbjct: 171 RLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQA 208
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 23/233 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + +G+++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----IGVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL +IIE +++ +I+ +P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
++ L IA E +S I + ++RKAI AL+ +++ +++
Sbjct: 165 VISRLRFIAENEGVKVSDDALEAIYEFTQGDMRKAINALQVAASVSREVTEEE 217
>gi|294866376|ref|XP_002764685.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239864375|gb|EEQ97402.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 287
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 29/279 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
F D +P++L+ H Q L+ L + PH+L G +G GK LL EI+G
Sbjct: 3 FLIDSERPTTLDELTYHDSITQQLRGLARRPDLPHLLFYGPTGGGKMTRIQCLLREIFGP 62
Query: 407 ACWNEKWPTQVL-----------VPVASSAHHVELNVNLQANAK--YALMGLVKEIRDNL 453
A K + + V V S +H+E+ +A + + L+KE+
Sbjct: 63 AVTKVKHEFRTIKDASSSRPMLDVQVLYSNYHLEVTPT-EAGTRDVVVIQHLIKEMAQAP 121
Query: 454 AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ +V ++V+ + + Q ++ M+ Y K+ + +I +++ C
Sbjct: 122 PLGGDVPFRVVVVNDAHNLSRSAQAGLRRTMEKYVGVLKIFFHADSLASLIPPLRSRCMS 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA------ 567
I+V P T + L ++ K +++ A IAT+++ +LR +M L+A A
Sbjct: 182 IRVPRPTTEVVKIELERVKAKMGVEMNPHLATIIATESRGDLRYGLMQLDAISAQNGGSH 241
Query: 568 ----LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRL 602
N P A L W+ VL ++ +IL + +PK+L
Sbjct: 242 ALRNANTPLAR-----LPWKVVLEDIVKDILTEQTPKQL 275
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + L V + PH+L G G GK A+AL ++YG+
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L I+ KE+ +L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>gi|311977866|ref|YP_003986986.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82000158|sp|Q5UQE8.1|RFCS2_MIMIV RecName: Full=Putative replication factor C small subunit L478;
Short=RFC small subunit L478; AltName: Full=Clamp loader
small subunit L478
gi|55417094|gb|AAV50744.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|308204420|gb|ADO18221.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|351737631|gb|AEQ60666.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257305|gb|EJN40913.1| putative replication factor C [Acanthamoeba polyphaga
lentillevirus]
Length = 370
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 14/253 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
F+ +K++P + F+ + + LK L + + PHI+I G SGSGK+ L LL +Y
Sbjct: 2 FFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYDE 61
Query: 406 --DACWNEKW-----PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI---RDNLAI 455
+ K+ T+ + + S +H+ + + KY L ++K+ +
Sbjct: 62 DVNILRKRKYNINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFDIF 121
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ IVI+ ++ A + Q ++ M+ Y +C+ I+ C + I++ +++ C+
Sbjct: 122 KTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PF-A 573
V P I V+ IA E+ L+ I NL+ AI L CK LN PF A
Sbjct: 182 VPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIWFLN-CKGLNCSPFIA 240
Query: 574 DDQPIPLGWEEVL 586
D+ L E +L
Sbjct: 241 LDEAFDLVVESIL 253
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 19/222 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++PS ++ I + +K+L+ GN PH+L G G+GK +A+A+ E+YGD
Sbjct: 7 IWVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHV-ELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
A W VL AS + + ++ A+ A MG + +I+
Sbjct: 67 A-----WRENVLELNASDERGITTIRERVKEFARTAPMG-------------KAPYKLII 108
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ +M+ Y + + IL II+ +++ C + + P ++
Sbjct: 109 LDEADNMTSDAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVL 168
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L IA +E ++ I ++ ++RKAI L+A A
Sbjct: 169 GRLRDIASREGVKVTDEALEAIWDISQGDMRKAINTLQAATA 210
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 23/224 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ E L IA+ E +L I ++ ++RKAI L+ A
Sbjct: 165 MAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAA 208
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK++ DGN PH++I G G GK + L HE+ GD
Sbjct: 12 WVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLAHELLGD- 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ N +K+ ++ P + +I++
Sbjct: 71 ----DYSKAVLELNASDDRGIEVVRN-----------QIKQFAQKKSLLPPGKHKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 116 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 176 LLQIIKAEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 215
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 21/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ + + LKE V + N PH+L G G+GK A+AL H++YG
Sbjct: 5 LWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYG- 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMI 464
E W L AS +++ + I+D P +V ++
Sbjct: 64 ----ESWRDNTLELNASDERGIDV--------------IRSRIKDYARTLPIGDVPFKLV 105
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ ++ + + IL IIE +++ C V + P +
Sbjct: 106 ILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDA 165
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L IA++E + I +++ +LRKAI L+A A++
Sbjct: 166 FQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAASAIS 210
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + L V + PH+L G G GK A+AL ++YG+
Sbjct: 5 WVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ +L C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L +I+ KE+ L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 23/232 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL IIE +++ +I+ +P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
++ L IA E +S I + ++RKAI AL+ A +D
Sbjct: 165 VISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAAATEKEITED 216
>gi|410720678|ref|ZP_11360031.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
gi|410600389|gb|EKQ54917.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
Length = 321
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 33/254 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H Q LK+ + + N P+++ G +G GK A+AL + G
Sbjct: 5 WVEKYRPQTLDEVVGQDHIIQRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS A +E + ++++ + MG I I +
Sbjct: 63 ---EYWKQNFLELNASDARGIETVRKDIKSFCRLKAMGAPFRI--------------IFL 105
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P H++++
Sbjct: 106 DEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIK 165
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL 586
L IA+ E+ + + I A+ ++R+A+ L++ ++ EEV
Sbjct: 166 RLEVIAKAENVNYAPGTLESIVYFAEGDMRRAVNILQSTASMG-------------EEVN 212
Query: 587 IELAAEILADPSPK 600
E E+++ PK
Sbjct: 213 EETVHEVVSKAKPK 226
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L+ + + LK V G+ PH+L G +G GK A+AL E +G
Sbjct: 7 IWTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFG- 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
E W AS +++ N ++ A+ A MG ++
Sbjct: 66 ----ENWQVNFRELNASDERGIDVVRNQIKQFARTAPMG-------------GAEFKILF 108
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P +
Sbjct: 109 LDEADALTNDAQAALRRTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVT 168
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
E L +IA+ E ++ + I A+ ++RKAI AL+
Sbjct: 169 EELNRIAKTEGLSITEDAMSAIIYVAQGDMRKAINALQG 207
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 21/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P+ L + + L V GN PH+L G +G GK A+ L E +GD
Sbjct: 7 IWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ W AS +++ N +I++ P A ++
Sbjct: 67 S-----WQMNFRELNASDERGIDVVRN--------------QIKEFARTRPAGDAAFKIL 107
Query: 467 Y--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P +
Sbjct: 108 FLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAV 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E + +IA +E D++ + A+ ++RKAI AL+ L+
Sbjct: 168 KEEITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILS 212
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ I LK V +G+ PH++ G +G+GK + A+AL E++GD
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGD- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W L AS +++ N I+D I P ++ +I
Sbjct: 64 ----DWKENFLELNASDERGIDIIRN--------------NIKDFAKIRPSNKLGFKIIF 105
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D+ Q ++ M+ + + + I C II +++ C V++ P+ E M
Sbjct: 106 LDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRF-RPLDKEAM 164
Query: 526 E-VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
E L +IA+ E FD+ I + ++RKAI ++A ++
Sbjct: 165 ERKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAINVMQAIQS 207
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 19/224 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L+ + + LK V + PH+L G +G+GK A+AL +++Y
Sbjct: 5 LWVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLY-- 62
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMI 464
++ LV +A+++ELN A+ + + + +I+D P EV +I
Sbjct: 63 -------KSEELV----AANYLELN----ASDERGIDTIRTKIKDFAKTAPFGEVPFKII 107
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ IM+ Y+ + + I C IIE +++ C V + P I
Sbjct: 108 HLDEADNLTADAQQALRRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAI 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
LI IA +E + + I A+ +LRKAI L+ A+
Sbjct: 168 KNRLIMIAEREGLKYTEDGISAIIYVAEGDLRKAINLLQTASAM 211
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 22/225 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + L V N PH+L G G GK A A+++ EI+G+
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + ELN + + + +V+ N A T + A +I
Sbjct: 75 LWRENF--------------TELNASDERG-----IDIVRNKIKNFAKTAPMGGAPFKII 115
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ ++ +C+ IL C IIE +++ C V + I
Sbjct: 116 FLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAI 175
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E L IA+++D ++ + A+ ++RKA+ +L+A ++
Sbjct: 176 RERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAAAFID 220
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L + H + L V + PH+L G G GK A+AL ++YGD
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L I+ KE L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + Q LK V N PH+L G G+GK A A+AL +++G
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-- 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
E W + +E+N + + + +V+ A T + A +I
Sbjct: 65 ---ENW----------RDNFIEMNASDERG-----IDVVRHKIKEFARTAPIGGAPFKII 106
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+ SC+ IL C IIE +++ C V + P +
Sbjct: 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L++I KE ++ + + + RKAI AL+ A+
Sbjct: 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 22/234 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ + + L+ V GN PH+L G +G GK A+AL E++GD
Sbjct: 9 IWIEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFGD 68
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ W AS +++ N +I++ +P V+
Sbjct: 69 S-----WQMNFREMNASDERGIDVVRN--------------QIKEFARTSPLAGATFKVL 109
Query: 467 Y--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P +
Sbjct: 110 FLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAV 169
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+E + +IA E ++ I A ++RKAI AL+ L P D++ I
Sbjct: 170 IEEITRIAAIEGLTVTEGALDAIVYVASGDMRKAINALQGAAILR-PEIDEEMI 222
>gi|449330012|gb|AGE96278.1| DNA replication factor c 38kDa subunit [Encephalitozoon cuniculi]
Length = 354
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 136/298 (45%), Gaps = 21/298 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P S + I + LLK ++ PH+++ G+SG GK+ + + L++ +YG
Sbjct: 2 IWIEKYRPRSFDEMIGREEASGLLKSYTLE-TIPHMIVHGRSGHGKKTVLLCLVNHLYGS 60
Query: 407 ACWNEKWPTQVL-------VPVASSAHHVELNVNLQANAKYAL-------MGLVKEIRDN 452
+ T+VL V S +VE++ + A+ MG K I
Sbjct: 61 IPEMKIRTTEVLSGAKKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQTKPILSM 120
Query: 453 LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
LA + ++VI ++ Q ++ ++ Y+ +++L C + +IE +++ C
Sbjct: 121 LARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCF 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYP 571
+++ ++ + +I KE++ + +I ++ ++R+A+ LE C +N
Sbjct: 181 FLRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLELVCFNMNES 240
Query: 572 FADDQPI-----PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
A I L WE ++ +A + + + LV +R + LL + P+ IL+
Sbjct: 241 EAKRAKIGGRDLKLEWELAVMSIAGAVKCNQTSSGLVEIRKTLYMLLNSCIPPRTILV 298
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 22/219 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + +H + LK+ V G+ P+++ G +G GK A+AL+ I GD
Sbjct: 5 WVEKYRPQTLDDIVGQKHIVESLKKYVDQGSMPNLMFTGPAGVGKTTSALALVKAILGDY 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
W L AS A +E ++ N K N V +I+
Sbjct: 65 -----WRQNFLELNASDARGIE---TVRTNIK------------NFCRLKPVGAPFRIIF 104
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
EVD + Q+ ++ M+ YT +C IL C II+ +++ C + + P EI
Sbjct: 105 LDEVDNMTKDAQHALRREMEMYTKTCSFILSCNYSSKIIDPIQSRCAIFRFAPIKAEEIA 164
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ L IA E + I + ++RK++ L++
Sbjct: 165 DRLKYIAEAEGCEYEEKAIETIVLFGEGDMRKSVNMLQS 203
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E L IA+ E +L I ++ ++RKAI L+ A N
Sbjct: 165 MAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATN 210
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +KH+P L + + + +K + GN PHIL+ G G+GK + L H + GDA
Sbjct: 5 WIEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAMLGDA 64
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ T V+ AS +++ + L A +K +L PE S+ ++
Sbjct: 65 -----YKTAVIELNASDDRGIDVVREKIKLFAQSKVSL--------------PEGSHKLV 105
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ Y+ + + L C IIE +++ C +++ + EI
Sbjct: 106 LLDEADSMTPAAQQALRRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEI 165
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++ L+ I +E + + + A +LR A+ +L+A
Sbjct: 166 LDRLLHICEEEKITYTNDGLSALLFCADGDLRVAVNSLQA 205
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YG+
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 76 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 115
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 116 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 175
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + IA +E +L+ + A ++RKAI L+A
Sbjct: 176 EEIRNIAAEEGIELTEDGLDALVYAADGDMRKAINGLQAA 215
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 128/273 (46%), Gaps = 42/273 (15%)
Query: 341 IEKLRPF-------WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKR 393
+E+ RP W +K++P +++ + ++L++ + + N PH+L G G+GK
Sbjct: 81 VERKRPVLAAQAQPWVEKYRPKTIDDISAQENTVRVLRKSLENANLPHMLFYGPPGTGKT 140
Query: 394 ALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-- 451
+ +AL +++G E + T+VL ELN A+ + + + ++I++
Sbjct: 141 STILALAKQLFGP----EAFRTRVL----------ELN----ASDERGITVVREKIKNFA 182
Query: 452 NLAITPEVSN------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
+AI+P V + +I++ E D + Q ++ IM+ Y+ + L C IIE
Sbjct: 183 KIAISPAVGDYPCPPYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIE 242
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ + C + P T + L + +KE+ + ++ +LR+AI L++
Sbjct: 243 PITSRCSKFRFKPLDTTNTQKRLEYVCQKEEVQCGEESVQALIRCSEGDLRRAITYLQSA 302
Query: 566 KALNYPFADDQPI-PLGWEEVLIELAAEILADP 597
L + D+P+ P+ +E+ A ++ DP
Sbjct: 303 SRL---YGKDKPVDPVSIQEI-----AGVVPDP 327
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 23/221 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L + + + L+ V PH+L G +G GK A+AL E++GD
Sbjct: 7 IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
WN + ELN + + + +V+ A T + +A +
Sbjct: 67 T-WNMNFR--------------ELNASDERG-----IDVVRNQIKQFARTAPLGDATFKI 106
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+ + E D + Q ++ M+ Y ++C+ IL C II+ +++ C + + P
Sbjct: 107 LFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEA 166
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
I E + +IA+KE + I + ++RKAI AL+
Sbjct: 167 ISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQG 207
>gi|19074687|ref|NP_586193.1| DNA REPLICATION FACTOR C 38kDa SUBUNIT [Encephalitozoon cuniculi
GB-M1]
gi|19069329|emb|CAD25797.1| DNA REPLICATION FACTOR C 38kDa SUBUNIT [Encephalitozoon cuniculi
GB-M1]
Length = 354
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 136/298 (45%), Gaps = 21/298 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P S + I + LLK ++ PH+++ G+SG GK+ + + L++ +YG
Sbjct: 2 IWIEKYRPRSFDEMIGREEASGLLKSYTLE-TIPHMIVHGRSGHGKKTVLLCLVNHLYGS 60
Query: 407 ACWNEKWPTQVL-------VPVASSAHHVELNVNLQANAKYAL-------MGLVKEIRDN 452
+ T+VL V S +VE++ + A+ MG K I
Sbjct: 61 IPEMKIRTTEVLSGAKKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQTKPILSM 120
Query: 453 LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
LA + ++VI ++ Q ++ ++ Y+ +++L C + +IE +++ C
Sbjct: 121 LARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCF 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYP 571
+++ ++ + +I KE++ + +I ++ ++R+A+ LE C +N
Sbjct: 181 FLRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLELVCFNMNES 240
Query: 572 FADDQPI-----PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
A I L WE ++ +A + + + LV +R + LL + P+ IL+
Sbjct: 241 EAKRAKIGGRDLKLEWELAVMSIAGVVKCNQTSSGLVEIRKTLYMLLNSCIPPRTILV 298
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 19/218 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ I + LK V GN PH+L G G GK A A+AL +++GDA
Sbjct: 7 WTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFGDA 66
Query: 408 CWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
W + AS +E + N++ A+ + +G E +I +
Sbjct: 67 -----WQNNFIELNASDERGIEVVRNNIKNFARTSPLG-------------EARFKVIFL 108
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ YT +C+ I+ C IIE +++ C + + ++
Sbjct: 109 DEADALTADAQSALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVET 168
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++ +I + E +S + A+ ++R+AI AL++
Sbjct: 169 MVRRIEKGEHIKVSPDGLEALIYVARGDMRRAINALQS 206
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L+ + Q LK V N PH+L G G+GK A A+AL +++G+
Sbjct: 5 IWVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +E+N + + + +V+ A T + A +
Sbjct: 65 -VWRENF--------------IEMNASDERG-----IDVVRHKIKEFARTAPIGGAPFKI 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ Y+ C+ IL C IIE +++ C V K P
Sbjct: 105 IFLDEADALTADAQAALRRTMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ + L +IA E ++ + + + RKAI AL+ AL+
Sbjct: 165 MKKRLKEIAENEGLEIDDEALEVLIYISGGDFRKAINALQGAAALD 210
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + H LK V + + P+++ G +G GK A+AL EI G
Sbjct: 8 WVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG-- 65
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E W L AS A ++ V+ N V +I+
Sbjct: 66 ---EYWRQNFLELNASDARGIDT---------------VRTSIKNFCRLKPVGAPFRIIF 107
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P H+I+
Sbjct: 108 LDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQII 167
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L IA KE+ + I A+ +LRKAI L++ +L
Sbjct: 168 KRLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLG 211
>gi|390348565|ref|XP_001196153.2| PREDICTED: replication factor C subunit 3-like [Strongylocentrotus
purpuratus]
Length = 180
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLG-W 582
I ++L + +KE +L A +IA K+++NLRKAI++ EACK YPF+ DQ IP W
Sbjct: 16 ITQILQNVCKKEGLNLPSELAKRIAEKSERNLRKAILSCEACKVQQYPFSADQDIPEADW 75
Query: 583 EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
E L + A I+ SP++L+ VRG++ +LL + +IL
Sbjct: 76 EVFLRDTANHIIQQQSPRQLLEVRGRMYELLTHCIPADVIL 116
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 100/217 (46%), Gaps = 16/217 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L I + + L+ + +GN P++L+ G G+GK + L HE+ G+
Sbjct: 5 IWIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEMLGN 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ VL AS V++ + G +K + P + +I++
Sbjct: 65 -----HFKNAVLELNASDDRGVDV-----------VRGAIKNFAKKSVVLPPNKHKIIIL 108
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
EVD E Q ++ IM+ Y+ + + L C IIE +++ C VI+ +P I+
Sbjct: 109 DEVDSMTEAAQQALRRIMEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILT 168
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
LI I ++E+ + + A ++R+A+ L+
Sbjct: 169 RLIHICKEENVQYTNDGMEALLFTANGDMRRAVNNLQ 205
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + N PH+L G G GK A A+A+ E++GDA
Sbjct: 6 WIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFGDA 65
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W++ + ELN A+ + + + +I+D +P + A +I
Sbjct: 66 -WHQNF--------------TELN----ASDERGIDVVRTKIKDFSKTSP-IGGADFKII 105
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ YT++C+ IL C IIE +++ C V + +++E
Sbjct: 106 FLDEADALTPDAQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRF-RSLSYEA 164
Query: 525 MEVLIQ-IARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E ++ IA +E +S I ++ ++RKAI AL+A ++
Sbjct: 165 VEKRVRYIAEQEGLQISEDGVEAIKYVSQGDMRKAINALQASALID 210
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + + LK+ V + PH+L G G GK A+ L +++G+
Sbjct: 5 WVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGEN 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN A+ + + + +++D P +V +I
Sbjct: 65 -WRE--------------NFLELN----ASDERGIDVIRTKVKDFARTKPIGDVPFKIIF 105
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P +I
Sbjct: 106 LDESDALTPDAQNALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIA 165
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
+ L +IA KE L+ + I ++ ++RKAI L+ AL+ D+
Sbjct: 166 KKLKEIAEKEGLKLTESGLEAIIYVSEGDMRKAINVLQTAAALSEVIDDE 215
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + Q LK V N PH+L G G+GK A A+AL +++G
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-- 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
E W + +E+N + + + +V+ A T + A +I
Sbjct: 65 ---ENW----------RDNFIEMNASDERG-----IDVVRHKIKEFARTAPIGGAPFKII 106
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+ SC+ IL C IIE +++ C V + P +
Sbjct: 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L++I KE ++ + + + RKAI AL+ A+
Sbjct: 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 22/234 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L + + L V GN PH+L G +G GK A+ L E + D
Sbjct: 7 IWIEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLAREFFRD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMI 464
+ W AS +++ N +I+ TP E + ++
Sbjct: 67 S-----WQMNFRELNASDERGIDVVRN--------------QIKQFARTTPLGEATFKIL 107
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P +
Sbjct: 108 FLDEADALTTDAQAALRRTMESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAV 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
E + +IA +E ++ I A+ ++RKAI AL+ +N P D++ +
Sbjct: 168 REEVRRIASREGLTITDGAMDAIVYIAQGDMRKAINALQGAAIIN-PAIDEKRV 220
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 22/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--AMI 464
W E + +ELN + + + +++E A T + ++
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPIKAPFKLV 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ Y + + IL II+ + + C V + P +
Sbjct: 105 ILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLM 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E L IA++E ++ I ++ ++RKAI L+ A N
Sbjct: 165 AERLKYIAKREGIEVGEDALDLIYELSEGDMRKAINLLQVAAATN 209
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 17/223 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W ++ +P L + L E V G+ PH+L G G GK A+AL E+YGD
Sbjct: 8 LWVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGD 67
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ W + VL AS +++ + VKE + P V ++++
Sbjct: 68 S-----WRSSVLELNASDERGIDV-----------IREKVKEFARTIPTGP-VPFKLVIL 110
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ IM+ Y + + IL IIE +++ C + + +P ++E
Sbjct: 111 DEADNMTSDAQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIE 170
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L QIA++ +++ I ++ ++RKAI L+ N
Sbjct: 171 RLRQIAKETGVEVTEDGLEAIWEVSQGDMRKAINTLQTTTTTN 213
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 23/224 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ E L IA+ E +L I ++ ++RKAI L+ A
Sbjct: 165 MAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAA 208
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H+ + LK V + PH+L G G GK A+ L ++YG+
Sbjct: 5 WVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNT 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WKENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ +L C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
++ L +I+ KE ++ + I ++ ++RKAI L+ A++
Sbjct: 165 VKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAVS 209
>gi|408383246|ref|ZP_11180783.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
gi|407814028|gb|EKF84666.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
Length = 321
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 108/229 (47%), Gaps = 20/229 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H LK+ + + N P+++ G +G GK A+AL + G
Sbjct: 5 WVEKYRPQTLDEVVGQDHIIHRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS A +E + ++++ + +G +P +I +
Sbjct: 63 ---EYWKQNFLELNASDARGIETVRKDIKSFCRLKAVG-----------SP---FRIIFL 105
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P H+++E
Sbjct: 106 DEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIE 165
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
L IA+ E+ + + I A+ ++R+A+ L++ ++ +D
Sbjct: 166 RLEIIAKAENVNYAPGTLESIVYFAEGDMRRAVNILQSTASMGEEITED 214
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + L+ + + PH+L G +G GK A A+ EIY
Sbjct: 15 REIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIY 74
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
G+ W + +ELN + Q + +RD + S
Sbjct: 75 GEDNWR--------------GNFLELNASDQRG--------IDVVRDRIKGFARSSFGGD 112
Query: 463 --MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ ++ +IA ED +++ + A ++R+AI +L+A
Sbjct: 173 DEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAA 217
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 120/276 (43%), Gaps = 24/276 (8%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
+ W +K++P +L+ + + + LK V + PH+L G +G+GK A+AL E+
Sbjct: 1 MEDVWVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALAREL 60
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP---EVS 460
+GD W SS H ELN + + +G+V+ A T +V
Sbjct: 61 FGD-----NWR--------SSFH--ELNASDERG-----IGIVRTKIKEYARTAAPNDVG 100
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
+I + E D Q ++ M+ Y+ +C+ IL C IIE +++ C V + P
Sbjct: 101 FKIIFLDEADALTPDAQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLK 160
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
+I + L IA E +++ I + ++RKAI L+ A++ D+ +
Sbjct: 161 AEDIKKRLRYIAENEGKEITDDALDAIVYISSGDMRKAINILQMSAAISDTI-DEGTVYK 219
Query: 581 GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEF 616
E E++ + R K+ KLL E
Sbjct: 220 ATGIAKREDVEEVVKKALGGDFISARNKLNKLLVEL 255
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 21/224 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ + + L+ V GN PH+L G +G GK A+AL E +GD
Sbjct: 7 IWIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ W T AS +++ N +I++ +P ++
Sbjct: 67 S-----WQTNFREMNASDERGIDVVRN--------------QIKEFARTSPLAGATFKIL 107
Query: 467 Y--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P +
Sbjct: 108 FLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAV 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+E +IA E ++ I A ++RKAI AL+ L
Sbjct: 168 IEETRRIAAAEGLTVTEGALDAIVYVASGDMRKAINALQGAAIL 211
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L + H + L V + PH+L G G GK A+AL ++YG+
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L I+ KE L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ + + LK V + PH+L G +G GK A+AL E YG+
Sbjct: 7 IWIEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKEFYGE 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
WN + E+N + + + +V+ A T + A +
Sbjct: 67 H-WNVNFR--------------EMNASDERG-----IDVVRNQIKQFARTAPIGGAEFKI 106
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+ + E D Q ++ M+ Y +C+ IL C II+ +++ C + + P
Sbjct: 107 LFLDEADALTNDAQAALRRTMENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREA 166
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I E L+ IA E LS + I + ++RKAI AL+ ++
Sbjct: 167 ITEELMHIAENEGLTLSEDAISAIIYVSAGDMRKAINALQGAAIID 212
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 37/285 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + + + LK+ V + N PH+L G G+GK A+AL++++YG+
Sbjct: 6 LWAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYGE 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL-AITPE-VSNAMI 464
+ +ELN A+ + + + +++D +TP+ V +
Sbjct: 66 NY---------------RQYFLELN----ASDERGIDVIRNKVKDFARTVTPQDVPFKTV 106
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ YT++ + IL C II+ +++ + + P ++
Sbjct: 107 LLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDV 166
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEE 584
+ L IA+ E + I ++RKAI L+A A + +
Sbjct: 167 ISRLEFIAKNEKVEYDPKALDTIYEITSGDMRKAINILQASSA--------------YGK 212
Query: 585 VLIELAAEILADPSPKRL-VMVRGKIQKLLAEFVHPKLILLVMHY 628
V E ++L PK + MV+ +Q E KL+ L+++Y
Sbjct: 213 VTTEAVYKVLGMAQPKEIREMVKSALQGRFTE-ARSKLLSLMINY 256
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + LK V N PH+L G G GK A A+++ E++ D+
Sbjct: 21 WIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFADS 80
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + ELN + + + +V+ + A T + A +I
Sbjct: 81 -WRENFT--------------ELNASDERG-----IDVVRTKIKSFAKTSPIGGADFKII 120
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ YT++C+ IL C IIE +++ C V + P +
Sbjct: 121 FLDEADALTSDAQAALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAV 180
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E + +A E +++ I A+ ++RKAI AL+A ++
Sbjct: 181 TERVRFVASNEGIEVATDGMEAIKYVAQGDMRKAINALQAASLVD 225
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 336 QKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL 395
++A R W +K++P +L+ + L+ + + PH+L G +G GK
Sbjct: 6 EQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTA 65
Query: 396 AMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI 455
A A+ EIYG+ W + +ELN + Q + +RD +
Sbjct: 66 ATAIAREIYGEDNWR--------------GNFLELNASDQRG--------IDVVRDRIKG 103
Query: 456 TPEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
S ++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C
Sbjct: 104 FARSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
V + P + ++ +IA E+ +++ + A ++R+AI +L+A
Sbjct: 164 AVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|358056280|dbj|GAA97763.1| hypothetical protein E5Q_04442 [Mixia osmundae IAM 14324]
Length = 382
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ L+ + + + LK + DGNCPHI+I GQ G GK +AL H + G A
Sbjct: 63 WVEKYRPAVLDDIVGNEETIERLKVIARDGNCPHIIISGQPGIGKTTSILALAHALLGKA 122
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 123 -----YKEGVLELNASDERGIDVVRN-----------RIKTFAQKKVTLPAGRHKIIILD 166
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ ++++
Sbjct: 167 EADSMTPGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYARLSDKQLLKR 226
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+++I E S A + + ++R+AI L++
Sbjct: 227 IVEICDMEQVKYSDDALASLIFTSDGDMRQAINNLQS 263
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + L+ L +GN P++++ G G GK +AL H++ GD
Sbjct: 7 WVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCHQLLGD- 65
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
K V+ AS +++ ++ N +KE PE + ++++
Sbjct: 66 ----KEKDAVIELNASDDRGIDV---VRKN--------IKEFAKRHVALPEGRHKVVLLD 110
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ IM+ YT + + + C +IE +++ C +++ +EI
Sbjct: 111 ESDSMTDAAQQAMRRIMENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAAR 170
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L++I E F A +A A ++R AI L++
Sbjct: 171 LMKICELEGFKPESEGIATLARLADGDMRTAINGLQS 207
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + L+ + + PH+L G +G GK A A+ EIY
Sbjct: 15 REIWIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIY 74
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
G+ W + +ELN + Q + +RD + S
Sbjct: 75 GEDNWR--------------GNFLELNASDQRG--------IDVVRDRIKGFARSSFGGD 112
Query: 463 --MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ ++ +IA ED +++ + A ++R+AI +L+A
Sbjct: 173 DEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAA 217
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 22/226 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P LN + LK V N PH+L G G GK A A+++ EI+G+
Sbjct: 14 IWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + ELN + + + +V+ N A T + A +
Sbjct: 74 DLWRENF--------------TELNASDERG-----IDIVRNKIKNFAKTAPIGGAPFKI 114
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ ++ +C+ IL C IIE +++ C V +
Sbjct: 115 IFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEA 174
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I E L IA + ++ + A+ ++RKA+ +L+A ++
Sbjct: 175 IKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAAAFID 220
>gi|401827719|ref|XP_003888152.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
gi|392999352|gb|AFM99171.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
Length = 354
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 139/298 (46%), Gaps = 21/298 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P S + + + +LK ++ PH+++ G+SG GK+ + L++ +YG
Sbjct: 2 IWIEKYRPKSFDRVVGREEISSVLKSYTLE-TIPHMILHGRSGCGKKTTLLCLVNHLYGG 60
Query: 407 ACWNEKWPTQVL-------VPVASSAHHVELNVNLQANAKYAL-------MGLVKEIRDN 452
+ + +V+ V S +VE++ + + A+ MG K I
Sbjct: 61 SPETKVRTVEVVSGTKRIEVSYMESDEYVEISPSQYGHHDKAVIQSIIKEMGQTKPILSM 120
Query: 453 LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
L + +I I ++ Q ++ ++ Y+ +++L C + +IE +++ C
Sbjct: 121 LGGAKKAPIKLIAITSAEELTLEAQAALRRTIEMYSSVLRVVLICNELSRLIEPIRSRCF 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALN-- 569
+++ +IM + I+ KE++ + +I ++ N+R+A+ LE C +N
Sbjct: 181 FLRIPSFSDGDIMSNMCMISEKENYAVPKERLEEICRASEGNMRRALCILELLCFNMNDK 240
Query: 570 --YPFADD-QPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
D+ + + L WE + + + I ++ +P+ L+ +R + LL + P+ IL+
Sbjct: 241 ETKRLKDNGKDLRLDWELAVTGITSIIKSNQTPEGLIEIRKSLYTLLNSCISPRTILI 298
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 105/224 (46%), Gaps = 24/224 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL H+ + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 33 WVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
A + + + L A+ + + ++I+D +++ P+V+
Sbjct: 91 -----------------AQYQNMILELNASDDRGIEVVRQQIQDFASTKSISFGPKVNVK 133
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D + Q+ ++ +++ YT S + L C II ++++ C + P
Sbjct: 134 LVILDEADAMTKDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDPA 193
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+ E L + ++E D++ A I A +LRKA+ L++ +
Sbjct: 194 NVTERLRYVIQQEGLDVTDGGLAAIVRLANGDLRKALNILQSAQ 237
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++PS+L + L+ V + PH+L G +G GK AMA+ EIYGD
Sbjct: 13 IWIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGD 72
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
W L AS ++ +V++ N A T VI
Sbjct: 73 -----DWRDNFLELNASDERGID---------------VVRDRIKNFARTSFGGYDYRVI 112
Query: 467 Y--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ + ++ + IL C II+ +++ C V + P +
Sbjct: 113 FLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAV 172
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + QIA +E +++ + A ++RKAI L+A
Sbjct: 173 AEYVEQIAGEEGIEITDDGVDALVYAADGDMRKAINGLQAA 213
>gi|396082271|gb|AFN83881.1| DNA replication factor C small subunit [Encephalitozoon romaleae
SJ-2008]
Length = 354
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 143/298 (47%), Gaps = 21/298 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P S + + + +LK ++ PH+++ G G GK+ + L+ +YG
Sbjct: 2 IWIEKYRPKSFDSIVGREKISSVLKSYTLE-TIPHLILHGGPGHGKKTTLLCLVTHLYGG 60
Query: 407 ACWNEKWPTQVL-------VPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
+ + +VL V S +VE++ + + K + ++KE+ I
Sbjct: 61 SPEMKIRTVEVLSGAKKIEVSYMESNEYVEISPSQYGHHDKAVIQSIIKEMGQTKPILSM 120
Query: 459 VSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
+ +A ++ I ++ Q ++ ++ Y+ +++L C + +IE V++ C
Sbjct: 121 LKSAKKAPIRLVAITSAEELTLEAQAALRRTIEMYSSVLRVVLVCNELSRLIEPVRSRCF 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA-C-----K 566
+++ +I+ + +I+ KE++ + +I +++ N+R+A+ LE C K
Sbjct: 181 FLRIPGFSNEDIISNMCRISEKENYAIPKEKLEEICKESEGNMRRALCILELFCFNMIDK 240
Query: 567 ALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILL 624
P + + + L WE +++ +++ + ++ +P+ LV +R + LL + P+ IL+
Sbjct: 241 ETKRPKINVKDLKLDWELMVMGISSIVKSNQTPEGLVEIRKSLYMLLNSCISPRTILI 298
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 108/231 (46%), Gaps = 23/231 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P++L+ + + + LK V + PH+L G G GK A+ L ++YGD
Sbjct: 5 WVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYGDD 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRE--------------NFLELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDV 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
++ + I+ E+ + + + I ++ ++RK++ L+ A++ +D
Sbjct: 165 LDYMNYISENENITIEKSGSDAIIYVSEGDMRKSVNVLQTAAAVSNVIDED 215
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 29/237 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L + H + L+ V + PH+L G +G GK +MA+ E+YGD
Sbjct: 14 IWIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYGD 73
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---- 462
W E + +ELN + + + +RD + S
Sbjct: 74 D-WRENF--------------LELNASDERG--------IDVVRDRIKDFARTSFGGYDY 110
Query: 463 -MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+I + E D Q ++ M+ + ++ + IL C II+ +++ C V + P
Sbjct: 111 RIIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAE 170
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ E + ++A E +++ + A ++RKA+ L+A + DD+ +
Sbjct: 171 EAVGEYIRRVAENEGIEVTDDGVDALVYAADGDMRKALNGLQAAATMEGA-VDDEAV 226
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 336 QKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL 395
++A R W +K++P +L+ + L+ + + PH+L G +G GK
Sbjct: 6 EQAAATATGREIWIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTA 65
Query: 396 AMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI 455
A A+ EIYG+ W + +ELN + Q + +RD +
Sbjct: 66 ATAIAREIYGEDNWR--------------GNFLELNASDQRG--------IDVVRDRIKG 103
Query: 456 TPEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
S ++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C
Sbjct: 104 FARSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
V + P + ++ +IA E+ +++ + A ++R+AI +L+A
Sbjct: 164 AVFRFSPLSDEAVSGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|393244589|gb|EJD52101.1| replication factor C subunit 4 [Auricularia delicata TFB-10046 SS5]
Length = 340
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 29/242 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ LK + +GNCPHI+I G G GK L HE+ GDA
Sbjct: 21 WVEKYRPLKLDDVVGNKDTIDRLKVIAREGNCPHIIISGLPGIGKTTSIHCLAHELLGDA 80
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + + A K L P+ + +
Sbjct: 81 -----YKEGVLELNASDERGIDVVRNKIKMFAQKKVTL--------------PKGRHKFV 121
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y+++ + L C IIE +++ C +++ EI
Sbjct: 122 ILDEADSMTSGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYAKLRNEEI 181
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA-------CKALNYPFADDQP 577
+ L++I ++E + + A+ ++R+AI L++ A N DQP
Sbjct: 182 VARLLEICKEESVTYNQDGIEALVFTAEGDMRQAINNLQSTFSGFGFVNAANVFKVCDQP 241
Query: 578 IP 579
P
Sbjct: 242 HP 243
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 30/242 (12%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + L+ + + PH+L G +G GK A A+ +Y
Sbjct: 16 REIWIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLY 75
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL------AITPE 458
GD W L AS +++ +RD + + PE
Sbjct: 76 GD-----DWRGNFLELNASDERGIDV------------------VRDRIKNFARSSFNPE 112
Query: 459 VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
+I + E D Q ++ M+ ++D + IL C II+ +++ C V + P
Sbjct: 113 RGYTIIFLDEADSLTNDAQSALRRTMEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSP 172
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
I E IA E +L+ + A ++R+AI +L+A A D++ +
Sbjct: 173 LGDDAIAEQTRDIAEAEGIELTEGGLDALVYAAGGDMRRAINSLQAA-ATTGEVVDEEAV 231
Query: 579 PL 580
L
Sbjct: 232 YL 233
>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
gi|110287812|sp|Q2FQT9.1|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
Length = 323
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 21/237 (8%)
Query: 341 IEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+E+ W +K++P L I + + L+ V PH+L G +G+GK A+AL
Sbjct: 1 MEETHAIWIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALA 60
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E +G E W AS +++ N +I+ +P
Sbjct: 61 REFFG-----EDWQMNFRELNASDERGIDVVRN--------------QIKQFARTSPFGG 101
Query: 461 NAMIVIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
+ +++ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P
Sbjct: 102 STFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRP 161
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
+ E++ +I+ ++ ++ I A+ ++RKAI AL+ L + D
Sbjct: 162 LGRQAVSEMVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPD 218
>gi|302843932|ref|XP_002953507.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
gi|300261266|gb|EFJ45480.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
Length = 356
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 116/262 (44%), Gaps = 36/262 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ H+ +K L + PH+L+ G G+GK + +A+ +IYG +
Sbjct: 38 WVEKYRPKSLDEVAAHKQIIDTIKRLTNENRLPHLLLYGPPGTGKTSTILAVARQIYGSS 97
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--AMIV 465
N + + L A+ + + + +EI+D + SN +I+
Sbjct: 98 MAN-------------------MTLELNASDERGISVVRQEIQDFASTRTIFSNKFKLII 138
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK---VDPPVTH 522
+ E D Q+ ++ +++ YT + + L C +I ++++ C + +DP H
Sbjct: 139 LDECDAMTNDAQFALRRVIEKYTRNARFCLICNYVSKVIPALQSRCTKFRFAPLDPQFVH 198
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ------ 576
E ++ +A E +L + ++R+++ L++C L + D Q
Sbjct: 199 ERLQ---YVASTERVNLGSGALDAVVELGNGDMRRSLNILQSCH-LAFDVVDQQAVYLCT 254
Query: 577 --PIPLGWEEVLIELAAEILAD 596
P+P +VL L E +AD
Sbjct: 255 GNPLPADISQVLTWLLNEPVAD 276
>gi|425701286|gb|AFX92448.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 457
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 13/238 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-G 405
F +K++P + FI ++ + L L + + PHI+I G G+GK+ L L IY
Sbjct: 2 FLFEKYRPKNFREFIFNKDTLEELNFLASNEDIPHIIISGPPGAGKKTLVKFFLESIYDS 61
Query: 406 DACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE--IRDNLAIT 456
D K T+ + + S +H+ + + KY L ++K+ + + I
Sbjct: 62 DVNILSKMKYHINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFNIF 121
Query: 457 PEVSN-AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
IVIY ++ A + Q ++ M+ Y +C+ I+ + I + +++ C+
Sbjct: 122 KTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PF 572
V P +I V+ I E+ L+ I N+++AI L+ C+ LN PF
Sbjct: 182 VSQPCIEDIRNVITHITIMENITLNYNEMKFILDNCDNNIKRAIWILD-CRRLNCDPF 238
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 112/272 (41%), Gaps = 21/272 (7%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAITPEVSNAM 463
GD W L AS +++ + N A+ + G I
Sbjct: 74 GD-----DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGFDYRI-------------- 114
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 115 IFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDA 174
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWE 583
+ E + IA E+ +L+ + A ++R+AI +L+A A D++ + L
Sbjct: 175 VREQVKDIAETEEIELTEDGLDALVYAAGGDMRRAINSLQAA-ATTGEIVDEEAVYLITS 233
Query: 584 EVLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
E E++ + R K++ LL +
Sbjct: 234 TARPEDIEEMVQSAIDGEFLTARSKLETLLVD 265
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++PS+L + L+ V + PH+L G +G GK AMA+ EIYGD
Sbjct: 13 IWIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGD 72
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
W E + +ELN + + + +V++ N A T VI
Sbjct: 73 D-WRENF--------------LELNASDERG-----IDVVRDRIKNFARTSFGGYDYRVI 112
Query: 467 Y--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ + ++ + IL C II+ +++ C V + P +
Sbjct: 113 FLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAV 172
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + +IA +E +++ + A ++RKAI L+A
Sbjct: 173 AEYVERIAGEEGIEITDDGVDALVYAADGDMRKAINGLQAA 213
>gi|363540259|ref|YP_004894456.1| mg405 gene product [Megavirus chiliensis]
gi|350611424|gb|AEQ32868.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 449
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 13/238 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-G 405
F +K++P + FI ++ + L L + + PHI+I G G+GK+ L L IY
Sbjct: 2 FLFEKYRPKNFREFIFNKDTLEELNFLASNEDIPHIIISGPPGAGKKTLVKFFLESIYDS 61
Query: 406 DACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE--IRDNLAIT 456
D K T+ + + S +H+ + + KY L ++K+ + + I
Sbjct: 62 DVNILSKMKYHINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFNIF 121
Query: 457 PEVSN-AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
IVIY ++ A + Q ++ M+ Y +C+ I+ + I + +++ C+
Sbjct: 122 KTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PF 572
V P +I V+ I E+ L+ I N+++AI L+ C+ LN PF
Sbjct: 182 VSQPCIEDIRNVITHITIMENITLNYNEMKFILDNCDNNIKRAIWILD-CRRLNCDPF 238
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 16/225 (7%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL W +K++P L + + Q L+ + DGN PH++I G G GK L HE
Sbjct: 6 KLELPWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHCLAHE 65
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ GDA + VL AS +E+ N +K P +
Sbjct: 66 LLGDA-----YSQAVLELNASDDRGIEVVRN-----------QIKHFAQKKCTLPAGKHK 109
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ M+ Y+++ + C IIE +++ C +++
Sbjct: 110 IIILDEADSMTSGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDE 169
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++++ L++I + ED + I A+ ++R+AI L++ A
Sbjct: 170 QVLKRLLEIIKLEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS L+ I + L V D N PH++ G G+GK + A+AL ++GD+
Sbjct: 5 WTEKYRPSKLSDVIGEKGNINRLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLFGDS 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL----AITP--EVSN 461
W + AS+ +++ IRDN+ I P ++
Sbjct: 65 -----WKENFMELNASNDRGIDI------------------IRDNIKNFAKIRPSNDLGF 101
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+I + E D Q ++ M+ + ++ + I C II +++ C V++ P
Sbjct: 102 KIIFLDEADHLTGDAQAALRRTMEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDR 161
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+ L IA+KE+F++ I + ++RKA+ L+A K
Sbjct: 162 ESMKNRLKDIAKKENFEIDDDSLDAIYEISDGDMRKAVNVLQAVK 206
>gi|371943702|gb|AEX61530.1| putative replication factor C small subunit [Megavirus courdo7]
Length = 457
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 13/238 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-G 405
F +K++P + FI ++ + L L + + PHI+I G G+GK+ L L IY
Sbjct: 2 FLFEKYRPKNFREFIFNKDTLEELNFLASNEDIPHIIISGPPGAGKKTLVKFFLESIYDS 61
Query: 406 DACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE--IRDNLAIT 456
D K T+ + + S +H+ + + KY L ++K+ + + I
Sbjct: 62 DVNILSKMKYHINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFNIF 121
Query: 457 PEVSN-AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
IVIY ++ A + Q ++ M+ Y +C+ I+ + I + +++ C+
Sbjct: 122 KTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PF 572
V P +I V+ I E+ L+ I N+++AI L+ C+ LN PF
Sbjct: 182 VSQPCIEDIRNVITHITIMENITLNYNEMKFILDNCDNNIKRAIWILD-CRRLNCDPF 238
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 336 QKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL 395
++A R W +K++P +L+ + L+ + + PH+L G +G GK
Sbjct: 6 EQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTA 65
Query: 396 AMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI 455
A A+ EIYG+ W + +ELN + Q + +RD +
Sbjct: 66 ATAIAREIYGEDNWR--------------GNFLELNASDQRG--------IDVVRDRIKG 103
Query: 456 TPEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
S ++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C
Sbjct: 104 FARSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
V + P + ++ +IA E+ +++ + A ++R+AI +L+A
Sbjct: 164 AVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 23/220 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + L E + GN PH+L G G+GK A+ L E+YG
Sbjct: 5 FWFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG- 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
E+W L ELN + + + +++E A T A +
Sbjct: 64 ----ERWRENTL----------ELNASDERG-----INVIRERVKEFARTAPAGGAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+V+ E D Q ++ IM+ Y + + +L IIE +++ C V + P
Sbjct: 105 VVLDEADNMTSDAQQALRRIMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
++ L IA +E ++ I + ++R+AI AL+
Sbjct: 165 VVARLRYIAEQEGLKVTQDALEAIFDFTQGDMRRAITALQ 204
>gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 321
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 111/247 (44%), Gaps = 24/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK L +E+ G
Sbjct: 10 WVEKYRPRVLDDIVGNEETVERLKIIAKDGNIPHMIISGLPGIGKTTSVHCLAYELLGKE 69
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+++ +ELN + + +K+ + P +I++
Sbjct: 70 YYHQA--------------TMELNAS-DDRGIDVVRNKIKQFAQTKILIPPGRTKIIILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + + C + IIE +++ C +++ + E++
Sbjct: 115 EADSMTPGAQQALRRTMEIYSNTTRFVFACNQSLKIIEPLQSRCAILRYNKLSDEEVLAR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++I + ED + + A+ ++R+AI L++ A + F + DQP P
Sbjct: 175 LLEIIKAEDVKFNNEGLQALIFSAEGDMRQAINNLQSTVA-GFGFVNDVNVFKIVDQPHP 233
Query: 580 LGWEEVL 586
L +++L
Sbjct: 234 LVIQKIL 240
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 28/228 (12%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
+ W +K++P L + H + L+ V + PH+L G +G+GK A A+++ EIY
Sbjct: 9 QEIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIY 68
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
GD W E + +ELN + Q + +RD + S
Sbjct: 69 GDD-WQENF--------------LELNASDQRG--------IDVVRDRIKNFARASFGGY 105
Query: 463 ---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+I + E D + Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 106 DYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQI 165
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L IA +ED + + + A ++R+AI AL+A A
Sbjct: 166 DDDAVAAHLRDIAGREDLEYTEAGIDALVYAADGDMRRAINALQAASA 213
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL IIE +++ +I+ P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ L IA E +S I + ++R+AI AL+
Sbjct: 165 VFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQ 204
>gi|448825359|ref|YP_007418290.1| putative replication factor C small subunit [Megavirus lba]
gi|444236544|gb|AGD92314.1| putative replication factor C small subunit [Megavirus lba]
Length = 457
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 13/238 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-G 405
F +K++P + FI ++ + L L + + PHI+I G G+GK+ L L IY
Sbjct: 2 FLFEKYRPKNFREFIFNKDTLEELNFLASNEDIPHIIISGPPGAGKKTLVKFFLESIYDS 61
Query: 406 DACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE--IRDNLAIT 456
D K T+ + + S +H+ + + KY L ++K+ + + I
Sbjct: 62 DVNILSKMKYHINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFNIF 121
Query: 457 PEVSN-AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
IVIY ++ A + Q ++ M+ Y +C+ I+ + I + +++ C+
Sbjct: 122 KTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PF 572
V P +I V+ I E+ L+ I N+++AI L+ C+ LN PF
Sbjct: 182 VSQPCIEDIRNVITHITIMENITLNYNEMKFILDNCDNNIKRAIWILD-CRRLNCDPF 238
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 23/240 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGNCPHI+I G G GK L H++ GDA
Sbjct: 26 WVEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDA 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 86 -----YKEGVLELNASDERGIDVVRN-----------KIKTFAQKKVTLPPGRQKIVILD 129
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y ++ + L C IIE +++ C +++ E+++
Sbjct: 130 EADSMTSGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYTKLRDTEVLQR 189
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I + E + + A+ ++R+AI L++ + D DQP P+
Sbjct: 190 LLEICQAEQVKYNDDGLTALIFTAEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPHPI 249
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 23/233 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P ++ I + LK V N PH+L G G+GK A+AL HE+YGDA
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN A+ + + + ++++ P +V ++
Sbjct: 64 -WRE--------------NFLELN----ASDERGIDVIRHKVKEFARAKPIGDVPFKIVF 104
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ IM+ Y+ S + IL C IIE +++ V K P
Sbjct: 105 LDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFR 164
Query: 526 EVLIQIARKEDFDLSM--TFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
E++ +I + E L + A+ +LRKAI L+A ++ D+
Sbjct: 165 ELINRIVKGEGLILENEDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDR 217
>gi|425773728|gb|EKV12062.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum PHI26]
gi|425782289|gb|EKV20208.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum Pd1]
Length = 352
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPTFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E+ + S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAENVEHSEDGIAALVFSAEGDMRQAINNLQS 230
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 23/240 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGNCPHI+I G G GK L H++ GD
Sbjct: 26 WVEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDG 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 86 -----YKEGVLELNASDERGIDVVRN-----------KIKSFAQKKVTLPPGRHKIVILD 129
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y ++ + L C IIE +++ C +++ E+++
Sbjct: 130 EADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDQEVLKR 189
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + S + A+ ++R+AI L++ + D DQP P+
Sbjct: 190 LLEICEMEKVEYSNEGLEALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPI 249
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 18/219 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ H L+ V + PH+L G +G GK AMA+ E+YGD
Sbjct: 12 IWIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREVYGD 71
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
W L AS +++ + N A G +I +
Sbjct: 72 -----DWRENFLELNASDERGIDVVRDRIKNFARASFG-------------GYDYRIIFL 113
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ + ++ + IL C II+ +++ C V + P + E
Sbjct: 114 DEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAE 173
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ +IA +E +++ + A ++RKAI L+A
Sbjct: 174 YVRRIAEEEGIEITEDGIDALVYAADGDMRKAINGLQAA 212
>gi|429963225|gb|ELA42769.1| hypothetical protein VICG_00084 [Vittaforma corneae ATCC 50505]
Length = 351
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 133/306 (43%), Gaps = 34/306 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P S + H+ +L + ++ P+++ GQ G KR + AL+ +YG
Sbjct: 2 LWIEKYKPKSFSEITTHKEVVSMLDKYTLE-TIPNMIFHGQIGHNKRTILYALISHLYGS 60
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVN-LQANA-------------KYALMGLVKEI--- 449
+P+ + A +++ V+ L+ N +Y + ++KEI
Sbjct: 61 ------YPSPTTKNIEVEAGSLKVMVDYLECNEMVEFCPSEYGYKDRYVVQSIIKEIARC 114
Query: 450 RDNLAI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
R L + S ++VI + + ++ Q ++ M+ Y+ K+I+ C + +IE +
Sbjct: 115 RPILGLFGAKRRSVKILVIDQAEDLSKDAQAALRRTMEMYSGHFKIIMVCTETSKLIEPI 174
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ C ++++ E+ + IA+ E F + I +K N ++A+ E
Sbjct: 175 RSRCMMVRIRGFRNDEMFRICSNIAKIEGFGVDKDAIDSICKNSKGNGKRALCLFEL-YC 233
Query: 568 LNYPFADDQ-------PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
N+ D + I L WE + +I P P+ ++ +R + LL + P
Sbjct: 234 FNHLLDDKKRQKTDYSQIRLEWELKTASIVDKIKRSPRPETMIEIRKDLYSLLNSLIPPS 293
Query: 621 LILLVM 626
+IL M
Sbjct: 294 IILAQM 299
>gi|384484069|gb|EIE76249.1| hypothetical protein RO3G_00953 [Rhizopus delemar RA 99-880]
Length = 160
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 421 VASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEVSNA--MIVIYEVDKAAEHIQ 477
V SS H+ELN +L + + ++K I I + ++VI + D+ Q
Sbjct: 5 VVSSNFHMELNPSDLGMYDRVIVQDVIKGIAQTQQIDANARHQFKIVVIDKADELTREAQ 64
Query: 478 YLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDF 537
++ M+ YT S +LILCC II V++ C +I+V P E + L+ +A KE+F
Sbjct: 65 AALRRTMEKYTSSMRLILCCNTLSKIIPPVRSRCLLIRVPRPEIEETVGALLNVASKENF 124
Query: 538 DLSMTFAAKIATKAKQNLRKAIMALE 563
LS AA IA +++N+R +++ALE
Sbjct: 125 QLSKQLAADIAEHSERNMRASLLALE 150
>gi|308159636|gb|EFO62161.1| Replication factor C, subunit 5 [Giardia lamblia P15]
Length = 373
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 121/272 (44%), Gaps = 36/272 (13%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K+ P+ L H +L + N PH+L+ G GSG+ +A + +YG
Sbjct: 1 MWCNKYTPAQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRILAYIRSVYGV 60
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAIT 456
+ P+ +L V + S+A H+ELN + N + + ++KE +I
Sbjct: 61 QTLD-YIPSTMLYETNTDTCEVNILSTACHLELNPSEMGNHDVFVIQTVLKETASTSSIG 119
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ ++V+ + DK + Q ++ +M+ Y+ +CKLIL E +I + + C I+V
Sbjct: 120 DKFK--VVVLQDADKLSFTAQQALRRLMEQYSATCKLILVTESISGLIPPIVSRCFCIRV 177
Query: 517 ----DPPVTHEIMEV-----LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
D + H + L+Q KE T +IA A+ +LR+A + L+
Sbjct: 178 PGFSDEEIVHALETTITKHRLMQSFTKESLR---TLLPEIAAVARGDLRRAFLLLQ---- 230
Query: 568 LNYPFADD------QPIPLGWEEVLIELAAEI 593
Y +A Q + WE + +A+++
Sbjct: 231 -TYQYASAKKNVSVQSLVPEWETLCTNIASQV 261
>gi|299472909|emb|CBN80478.1| RFC small subunit [Ectocarpus siliculosus]
Length = 324
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 126/269 (46%), Gaps = 37/269 (13%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ- 435
G+ PH+L G GSGK L LL ++YG N + +V ASS H +E++V +
Sbjct: 16 GDIPHLLFHGPRGSGKMTLVRHLLEKLYGPGV-NRVTAEKRVVETASSKHTIEIDVRVSN 74
Query: 436 -----------ANAKYALMGLVKEIRDNLAITP-----EVSNAMIVIYEVDKAAEHIQYL 479
AN Y + +KE+ +N +I +V + IV+ ++ Q
Sbjct: 75 YHIEMEPSDAGANDTYVVQHAIKEMANNGSIAAVFKNCDVRHKTIVLRGAGNLSKQAQAG 134
Query: 480 IKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL 539
++ M+ +T SC+L+L +IE +++ C +I+V P + E + I+I +
Sbjct: 135 LRRTMEKFTASCRLVLVSAFASRVIEPLRSRCVLIRVPLP-SAENLAAAIEIDDE----- 188
Query: 540 SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSP 599
T ++I + +++ +A+ +A A D+ + W + + + + + SP
Sbjct: 189 --TLVSQIVESSGRSISRAMFMAKAGSA-------DKML---WVKYVESICTGVFLEQSP 236
Query: 600 KRLVMVRGKIQKLLAEFVHPKLIL-LVMH 627
++L+ VR + +LL V +IL +MH
Sbjct: 237 RKLIDVRDSLNELLVAGVPASIILKTLMH 265
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + LK V N PH+L G G GK A A+++ EI+G+
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + ELN + + + +V+ N A T + A +I
Sbjct: 71 LWRENF--------------TELNASDERG-----IDVVRTKIKNFAKTAPMGGAEFKII 111
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ ++++C+ IL C IIE +++ C V + I
Sbjct: 112 FLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAI 171
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ L IA+ + ++ + ++ ++RKA+ +L+A
Sbjct: 172 RKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAA 212
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 20/222 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L + L+ + G PH+L G +G GK + A A+ EIY
Sbjct: 13 REIWIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIY 72
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAM 463
GD W L AS +++ + +++ A+ A G I
Sbjct: 73 GD-----DWRGNFLELNASDERGIDVVRDRIKSFARSAFGGHDYRI-------------- 113
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 IFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEA 173
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
I L +IA E +++ + A ++R+ I +L+A
Sbjct: 174 IANQLGEIAEIEAIEVTDEGFDALVYAANGDMRRGINSLQAA 215
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 23/240 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGNCPH++I G G GK L H++ GDA
Sbjct: 22 WVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLGDA 81
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ + +K+ P + ++++
Sbjct: 82 -----YKEGVLELNASDERGIEV-----------VRTKIKQFAQKKVTLPPGRHKIVILD 125
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++++ + L C IIE +++ C +++ EI++
Sbjct: 126 EADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKR 185
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I +ED + + ++ ++R+AI L++ + D DQP P+
Sbjct: 186 LLEICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQSTFSGFGFVSGDNVFKICDQPHPI 245
>gi|56754473|gb|AAW25424.1| SJCHGC05804 protein [Schistosoma japonicum]
Length = 335
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 30/234 (12%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKR---- 393
V I+ + P W +K++P L + + + L +GN P+I+I G G GK
Sbjct: 12 VVPIKTMEPPWVEKYRPIELKDIVGNENTISRLSVFSREGNLPNIIIAGPPGCGKTTSIL 71
Query: 394 ALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIR 450
LA +L + Y DA VL AS+ +E+ + + A K +L
Sbjct: 72 CLARTMLKDAYKDA---------VLEMNASNERGIEVVRTKIKMFAQKKVSL-------- 114
Query: 451 DNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
PE MI++ E D E Q ++ IM+ Y+ + + L C D +IE +++
Sbjct: 115 ------PEGRQKMIILDEADSMTEGAQQALRRIMELYSRTTRFALACNDSSKLIEPIQSR 168
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
C V++ + +IM L++++ E + I A ++R+A+ L++
Sbjct: 169 CAVLRYTRLTSAQIMARLLEVSHSEGVSYTEEGLEAIVFTADGDMRQALNNLQS 222
>gi|146423599|ref|XP_001487726.1| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 112/247 (45%), Gaps = 24/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK L +E+ G
Sbjct: 12 WVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGKT 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+++ L AS +++ N +K+ + P + +I++
Sbjct: 72 MYDQA----TLELNASDDRGIDVVRNK-----------IKQFAQTKILLPPGRHKIIILD 116
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ + +++
Sbjct: 117 EADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSR 176
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++IA+ ED + + A+ ++R+AI +++ A + F D DQP P
Sbjct: 177 LLEIAKAEDVKYNSQGLQALIFTAEGDMRQAINNMQSTVA-GFGFVDDVNVFKIVDQPHP 235
Query: 580 LGWEEVL 586
L +++L
Sbjct: 236 LVIKKIL 242
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL IIE +++ +I+ P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ L IA E ++ I + ++R+AI AL+
Sbjct: 165 VFARLRYIADNEGVKITDDALEAIYEFTQGDMRRAINALQ 204
>gi|156098400|ref|XP_001615232.1| replication factor C subunit 5 [Plasmodium vivax Sal-1]
gi|148804106|gb|EDL45505.1| replication factor C subunit 5, putative [Plasmodium vivax]
Length = 349
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD- 406
W +K+ P SL+ H+ + LK+L + PHI+ G G GK L+ EI+ +
Sbjct: 2 WLEKYAPQSLDELKIHKDITERLKKLSAHKDLPHIIFYGAPGGGKSTRIDCLIKEIFKEE 61
Query: 407 ------ACWNEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEV 459
C ++ + V S +H+EL L K + ++KE+ +
Sbjct: 62 KIIRRPECLTNA-ENKISINVVQSNYHLELQCFELGIKDKVIVQNVIKELCSYKSSASFF 120
Query: 460 SNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
S A + V + + +E Q ++ ++ Y + ++IL E IIE +K+ C I+
Sbjct: 121 SKAPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIR 180
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMT---FAAKIATKAKQNLRKAIMALE 563
V P EI+ VL I+ E S + F + K +NLRK IMALE
Sbjct: 181 VPLPTEEEIIGVLKDISESEHVSASFSSVEFFKTLINKHGRNLRKCIMALE 231
>gi|367024189|ref|XP_003661379.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
gi|347008647|gb|AEO56134.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 34 WVEKYRPVFLDDIVGNTETVERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGDA 93
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ + +K P+ + ++++
Sbjct: 94 -----YKEAVLELNASDERGIEV-----------VRQRIKGFAQKKVTLPQGRHKIVILD 137
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 138 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKR 197
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 198 LLQIIEAEKVEYSDDGLAALVFTAEGDMRQAINNLQSTHA 237
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 23/240 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGNCPH++I G G GK L H++ GDA
Sbjct: 22 WVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLGDA 81
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ + +K+ P + ++++
Sbjct: 82 -----YKEGVLELNASDERGIEV-----------VRTKIKQFAQKKVTLPPGRHKIVILD 125
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++++ + L C IIE +++ C +++ EI++
Sbjct: 126 EADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKR 185
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I +ED + + ++ ++R+AI L++ + D DQP P+
Sbjct: 186 LLEICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQSTFSGFGFVSGDNVFKICDQPHPI 245
>gi|253744271|gb|EET00499.1| Replication factor C, subunit 5 [Giardia intestinalis ATCC 50581]
Length = 373
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 121/269 (44%), Gaps = 30/269 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K+ P+ L+ HR +L + N PH+L+ G GSG+ +A + +YG
Sbjct: 1 MWCNKYTPTQLDAMDYHRDATRLFISVARAKNPPHLLVHGPRGSGRHTRILAYIRSVYGV 60
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAIT 456
+ P+ +L V + S+A H+ELN + N + + ++KE +I
Sbjct: 61 QTLD-YIPSTMLYETNTDTCEVNILSTACHLELNPSEMGNHDVFIIQTVLKETASTSSIG 119
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ ++V+ + DK + Q ++ +M+ Y +CKLIL E +I + + C I+V
Sbjct: 120 DKFK--VVVLQDADKLSFTAQQALRRLMEQYAATCKLILVAESISGLISPIVSRCFCIRV 177
Query: 517 ----DPPVTHEIMEVLIQIARKEDF--DLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
D + H + + + +F + T ++A A +LR+A + L+ Y
Sbjct: 178 PGFSDEEIVHALDTTITKHRLMPNFTKESLHTLLPEVAAVACGDLRRAFLLLQ-----TY 232
Query: 571 PFADD------QPIPLGWEEVLIELAAEI 593
+A Q + WE + +A+++
Sbjct: 233 QYASAKRNVSIQSLVPEWETLCTNIASQV 261
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 19/222 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + R + LK V + N PH+L G G+GK A+AL+H++YG
Sbjct: 6 LWAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYG- 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIV 465
E + +L AS +++ N VKE +TP V ++
Sbjct: 65 ----ENYEQYLLELNASDERGIDVIRN-----------KVKEFART--VTPGSVPFKTVL 107
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ YT++ + IL C II+ +++ + + P +++
Sbjct: 108 LDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVI 167
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L I ++E I ++RKAI L+A A
Sbjct: 168 SRLEFIMKQEGVQYDPKALDVIYDVTNGDMRKAINVLQAASA 209
>gi|398392868|ref|XP_003849893.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
gi|339469771|gb|EGP84869.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
Length = 460
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 105/226 (46%), Gaps = 6/226 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PSSL+ H+ + + V PH+L+ G G+GK + +AL IYG
Sbjct: 49 WVEKYRPSSLDDVHGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 106
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN-AMIVI 466
N+ VL AS +++ V Q + + D A ++N +I++
Sbjct: 107 --NKNMRQMVLELNASDDRGIDV-VREQIKTFSSTKQIFAGSFDKSAQQSTIANYKLIIL 163
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ IM+ YT + + + + ++ + C + P +I +
Sbjct: 164 DEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRQ 223
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
++ ++ R+ED +++ + T +K ++R+A+ L+AC A + P
Sbjct: 224 LVDKVVREEDVNIAPDATDSLVTLSKGDMRRALNVLQACHASSTPL 269
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 23/229 (10%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
RP W +K++PSSL+ + H+ +L+ L+ PH L+ G G+GK + +A ++Y
Sbjct: 425 RP-WVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMY 483
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
G A + + + L A+ + + +I++ S
Sbjct: 484 G-------------------AGYKSMTLELNASDDRGIDVVRDQIKEFAGTRRLFSKGIK 524
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D + Q+ ++ +++ YT + + L C II ++++ C + P
Sbjct: 525 LIILDEADMMTKDAQFALRRVIEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPD 584
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+I + I R+E+ + + K ++R+ + L+A A+ YP
Sbjct: 585 QIAGRVADIVRRENVAIGTKATDALLELGKGDMRRVLNVLQAA-AVAYP 632
>gi|308160432|gb|EFO62923.1| Replication factor C, subunit 4 [Giardia lamblia P15]
Length = 322
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
K PF ++++P SL+G I + L+ GN P+IL+ G G GK +A+ L ++
Sbjct: 2 KALPFI-ERYRPRSLDGLIGNPEILARLRYFAAQGNLPNILLTGGPGLGKTTIALCLANQ 60
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ G S +ELN + + N + VK P
Sbjct: 61 MLG---------------AHRSVAFLELNASDERNVS-DIRAKVKTFAQKQVTLPTGIQK 104
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++ + E D E Q +++ IMD T S + L C + +IE V++ C V+++ PP
Sbjct: 105 LVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPPTQA 164
Query: 523 EIMEVLIQIARKE 535
E+++ L +I KE
Sbjct: 165 ELVKYLQEICEKE 177
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 23/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + ++ LK + DGNCPH+LI G G GK + L + GDA
Sbjct: 22 WVEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLGDA 81
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS V++ N +K P + +I++
Sbjct: 82 -----YKEGVLELNASDERGVDVVRN-----------KIKTFAQKKVSLPPGRHKIIILD 125
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ +I++
Sbjct: 126 EADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVRDEQILKR 185
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + S A I + ++R+AI L++ L + D DQP P
Sbjct: 186 LLEICEMEAVEYSDEGLAAIIFTTEGDMRQAINNLQSTWTGLGFVSPDNVFKVCDQPHPF 245
Query: 581 GWEEVLI 587
+L+
Sbjct: 246 LIRALLL 252
>gi|298713109|emb|CBJ33469.1| Viral replication factor C subunit [Ectocarpus siliculosus]
Length = 324
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 36/264 (13%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ- 435
G+ PH+L G GSGK L LL ++YG N + +V ASS H +E++V +
Sbjct: 16 GDIPHLLFHGPRGSGKMTLVRHLLEKLYGPGV-NRVTTEKRVVETASSKHTIEIDVRVSN 74
Query: 436 -----------ANAKYALMGLVKEIRDNLAITPEVSNA-----MIVIYEVDKAAEHIQYL 479
AN Y + +KE+ +N +I +N IV+ ++ Q
Sbjct: 75 YHIEMEPSDAGANDTYVVQHAIKEMANNGSIAAVFNNCGVTHKTIVLRGSGNLSKQAQAG 134
Query: 480 IKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL 539
++ M+ +T SC+L+L +IE +++ C +I+V P + E + I+I K
Sbjct: 135 LRRTMEKFTASCRLVLVSTFASRVIEPLRSRCVLIRVPLP-SAENLAAAIEIDDK----- 188
Query: 540 SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSP 599
++I + +++ +AI +A A D+ + W + + + + SP
Sbjct: 189 --ALVSQIVESSGRSISRAIFMAKAGSA-------DKMV---WVKYTESICKGVFLEQSP 236
Query: 600 KRLVMVRGKIQKLLAEFVHPKLIL 623
++L+ VR + +LL V +IL
Sbjct: 237 RKLIDVRDSLNELLVAGVPASIIL 260
>gi|147776609|emb|CAN65125.1| hypothetical protein VITISV_012412 [Vitis vinifera]
Length = 158
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 13/122 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
W DK++P +L+ I H AQ LK+LV + +CPH+L G GSGK+ L MA+L +++G
Sbjct: 2 LWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFGP 61
Query: 406 --------DACWNEKWPTQVL---VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNL 453
+ W T+ + + SS HH+ELN + +Y + ++KE+ N
Sbjct: 62 SADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKNR 121
Query: 454 AI 455
I
Sbjct: 122 PI 123
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+ V G+ PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C + + P +
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E L IA+ E +L I ++ ++RKAI L+ A N
Sbjct: 165 MAERLRLIAKSEGVELRDDAIDIIYELSEGDMRKAINLLQVVAATN 210
>gi|258569615|ref|XP_002543611.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
gi|237903881|gb|EEP78282.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
Length = 278
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGKHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I+E
Sbjct: 134 EADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDTQIVER 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI + ED S A + A+ ++R+AI L++
Sbjct: 194 LDQICKAEDVKHSDDGIAALVFSAEGDMRQAINNLQS 230
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + ++ LK + DGNCPH+LI G G GK + L + GDA
Sbjct: 23 WVEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLGDA 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS V++ N +K P + ++++
Sbjct: 83 -----YKEGVLELNASDERGVDVVRN-----------KIKTFAQKKVSLPAGRHKIVILD 126
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ +I++
Sbjct: 127 EADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVKDEQILKR 186
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L++I E + + A I + ++R+AI L++
Sbjct: 187 LLEICEMEKVEYTDEGLAAIIFTTEGDMRQAINNLQS 223
>gi|71033883|ref|XP_766583.1| replication factor C subunit 5 [Theileria parva strain Muguga]
gi|68353540|gb|EAN34300.1| replication factor C subunit 5, putative [Theileria parva]
Length = 319
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 120/297 (40%), Gaps = 58/297 (19%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELV--VDGNCPHILIKGQSGSGKRALAMALLHEIY 404
W DKH P +LN F H+ ++LL ++V G PH L G SGSGK+ +A L ++
Sbjct: 2 LWIDKHCPKNLNDFTSHKDLSELLLKIVNKSHGELPHFLFYGPSGSGKKCRILATLRSVF 61
Query: 405 G---DAC--WNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459
G D C E +P +L LQ + L+
Sbjct: 62 GNKVDKCRMLYEVYPQHLL---------------LQTFFRKDLL---------------- 90
Query: 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
I + D ++ Q ++ M+ + ++ L I+ +++ C I+V
Sbjct: 91 ------IEDADTLSQEAQAALRRTMETCIKNARMFLHVRQLSRIMAPLRSRCLCIRVRSH 144
Query: 520 VTHEIMEVLIQIARKEDFDLSMT---FAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
EI+ +L I ED S IA +K+NLR++I+ LE + + +
Sbjct: 145 TNDEIVGILRNICNSEDITPSQASDQMLRNIAESSKRNLRRSILILETIAMGGFTL-ETK 203
Query: 577 PIPLGWEEVLIELAAEILADPSPK----------RLVMVRGKIQKLLAEFVHPKLIL 623
+ WE+ + ++ +L+ +P RL VR +I LL + LIL
Sbjct: 204 NFMMPWEKNVTQIVQSVLSSQTPSTYETIFRIFFRLSAVRPQIYDLLVCCIPGDLIL 260
>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
acidophilum]
Length = 330
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 25/232 (10%)
Query: 336 QKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL 395
Q +V+IE W +K++P SL+ Q LK V PH+L G G+GK +
Sbjct: 9 QGSVMIE----IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTST 64
Query: 396 AMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI 455
A+AL E++GD+ W E + VE+N A+ + + + +I+D I
Sbjct: 65 AIALAIELFGDS-WKE--------------NMVEMN----ASNENGIDVIRNKIKDIARI 105
Query: 456 TPE--VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
P + ++ + E D+ Q ++ M+ Y+++ + I C II +++ V
Sbjct: 106 KPSNPLGFKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVV 165
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
++ P I L +IA+ E F + + + ++RKAI L+A
Sbjct: 166 MRFRPVPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAV 217
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 30/227 (13%)
Query: 345 RPFWADKHQPSSLNGFICHRHEA--QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
R W +K++P SL+ H EA + L+ + + PH+L G +G+GK A A+ +
Sbjct: 15 REIWIEKYRPQSLDDI--HGQEAIVERLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQ 72
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+YGD W + +ELN + Q + +RD + S
Sbjct: 73 VYGDDNWR--------------GNFLELNASDQRG--------IDVVRDRIKGFARSSFG 110
Query: 463 ----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 111 GDFRIVFLDEADSLTDEAQAALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSP 170
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ +IA E +++ + A ++R+AI +L+A
Sbjct: 171 LSDAAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAA 217
>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
Length = 357
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 37 WVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSVLCLARQLLGDA 96
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ + +K P+ + ++++
Sbjct: 97 -----YKEAVLELNASDERGIDV-----------VRQRIKGFAQKKVTLPQGRHKLVILD 140
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 141 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKR 200
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 201 LLQIIDAEGVKFSEDGLAALVFSAEGDMRQAINNLQS 237
>gi|444320537|ref|XP_004180925.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
gi|387513968|emb|CCH61406.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
Length = 324
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + L+++ +DGN PH++I G G GK L HE+ GD+
Sbjct: 14 WVEKYRPKVLKDIVGNNETIDRLQQIALDGNMPHMIISGMPGIGKTTSIHCLAHELLGDS 73
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ N +K P N +I++
Sbjct: 74 -----YKQAVLELNASDDRGIEVVRN-----------QIKHFAQKKCHLPPGKNKIIILD 117
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ + E+++
Sbjct: 118 EADSMTSGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYNKLSDEEVLKR 177
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E+ + I A+ ++R+AI L++ A
Sbjct: 178 LLQIIELENVQYTNDGLEAIIFTAEGDMRQAINNLQSTVA 217
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 23/240 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGNCPHI+I G G GK L H++ GDA
Sbjct: 25 WVEKYRPQVLDDVVGNTDTIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDA 84
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 85 -----YKEGVLELNASDERGIDVVRN-----------KIKAFAQKKVTLPSGRHKIVILD 128
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y ++ + L C IIE +++ C +++ E+++
Sbjct: 129 EADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDTEVLKR 188
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + + A+ ++R+AI L++ + D DQP P+
Sbjct: 189 LLEICEMEKVQYNDEGLEALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPI 248
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 22/223 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--AMI 464
W E + +ELN + + + +++E A T + ++
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPIKAPFKLV 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ Y + + IL IIE +++ +++ +P +
Sbjct: 105 ILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAV 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L IA E S I + ++RKAI AL+ A
Sbjct: 165 IARLRYIAENEGIKASDDALETIFEFTQGDMRKAINALQIAAA 207
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + +R LK + DGNCPH+LI G G GK + L + GDA
Sbjct: 24 WVEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLGDA 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS V++ N N + L P + ++++
Sbjct: 84 -----YKEGVLELNASDERGVDIVRNKIKNFAQKKVSL-----------PPGRHKIVILD 127
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ +I++
Sbjct: 128 EADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKIRDEQILKR 187
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L++I + E + S I ++ ++R+AI L++
Sbjct: 188 LLEICKMEGVEYSDEGLGAIIFTSEGDMRQAINNLQS 224
>gi|221055946|ref|XP_002259111.1| replication factor c subunit 5 [Plasmodium knowlesi strain H]
gi|193809182|emb|CAQ39884.1| replication factor c subunit 5, putative [Plasmodium knowlesi
strain H]
Length = 349
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 16/231 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD- 406
W +K+ P SL+ H+ Q LK+L + PHI+ G G GK L+ EI+ +
Sbjct: 2 WLEKYAPQSLDELKIHKDITQRLKKLSAHKDLPHIIFYGAPGGGKSTRIDCLIKEIFKEE 61
Query: 407 ------ACWNEKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEV 459
C ++ + V S +H+EL L K + ++KE+ +
Sbjct: 62 KIIRRPECLTNA-ENKISINVVQSNYHLELQCFELGIKDKVIVQNVIKELCSYKSSASFF 120
Query: 460 SNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
S + V + + +E Q ++ ++ Y + ++IL E IIE +K+ C I+
Sbjct: 121 SKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIR 180
Query: 516 VDPPVTHEIMEVLIQIARKEDF---DLSMTFAAKIATKAKQNLRKAIMALE 563
V P EI VL I+ E S+ F + K +NLRK IMALE
Sbjct: 181 VPLPTEEEIFSVLNDISESEHVPEPFCSVDFFKTLINKHGRNLRKCIMALE 231
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ + H+ +++ + G PH+L+ G G+GK + +AL +YG A
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN---AMI 464
H +ELN + + +V+E N A+T + + ++
Sbjct: 116 YRK---------------HILELNASDDRG-----IDVVREQIKNFAMTKVLFSKGFKLV 155
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ +++ +T + + + C I ++++ C + P EI
Sbjct: 156 ILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEI 215
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ ++ +KE +L+ I ++ ++R+A+ L+AC A Y D+ +
Sbjct: 216 QVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALNVLQACHA-AYDIVDETAV 268
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 25/241 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + DGNCPHI+I G G GK L H + GDA
Sbjct: 24 WVEKYRPRVLDDVVGNTDTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHALLGDA 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 84 -----YKEGVLELNASDERGIDVVRN-----------KIKTFAQKKVTLPPGRHKIIILD 127
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ E+++
Sbjct: 128 EADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSKLRDQEVLKR 187
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++I E + + A+ ++R+AI +++ + + F + DQP P
Sbjct: 188 LLEICEAEKVKYNDEGLTALIFTAEGDMRQAINNIQSTWS-GFGFVNGDNVFKVCDQPHP 246
Query: 580 L 580
+
Sbjct: 247 V 247
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 104/224 (46%), Gaps = 19/224 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK +VV N PH+L G G+GK A A A +++G
Sbjct: 11 WVEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHAFAQDLFG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
P + H +E+N A+ + + + + ++ P + +++
Sbjct: 69 ------PRYI-----EDGHFIEIN----ASDERGIETIRERVKTYARSVPFGGIGFRLLL 113
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D+ + Q+ + M+ ++ +C+ IL IIE +++ C V++ P +
Sbjct: 114 LDESDQLTDAAQHAFRRTMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLSKDMVE 173
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+L +IA E+ L + I + ++RKAI L++ +++
Sbjct: 174 TMLKKIAASENIKLDDSAIDAIYEFSLGDMRKAINILQSAASIS 217
>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
Length = 328
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + + LK + +GN P+I++ G G GK AL E+ GD
Sbjct: 12 WVEKYRPQILADIVGNENIVERLKVIAKEGNVPNIILSGPPGCGKTTSVWALARELLGD- 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
K VL AS +++ N +K PE + +I++
Sbjct: 71 ----KVKDAVLELNASDERGIDVVRNR-----------IKTFAQTRVTLPEGRHKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D E Q ++ M+ Y+ + + L C IIE +++ C +++ E+M
Sbjct: 116 EADSMTEGAQQALRRTMEIYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLTAAELMSR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++++A+ ED + I A+ ++R+A+ L+A
Sbjct: 176 VVEVAKAEDVNHDDGGLEAILFTAQGDMRQALNNLQA 212
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L + + L+ + DGN PH+L+ G G GK +AL E+ GD+
Sbjct: 14 WVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALARELLGDS 73
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + + A K L P + +I
Sbjct: 74 -----FKEGVLELNASDERGIDVVRNKIKMFAQQKVTL--------------PPGRHKII 114
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y+++ + L C + +IIE +++ C +++ E+
Sbjct: 115 ILDEADSMTSASQQAMRRTMELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKEL 174
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ L I KE+ S + A ++R+A+ +L++
Sbjct: 175 LSRLQDICEKEEVLASTDGLEALIFTADGDMRQAVNSLQS 214
>gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 110/247 (44%), Gaps = 24/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK L +E+ G
Sbjct: 12 WVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGKT 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+++ +ELN + + +K+ P + +I++
Sbjct: 72 MYDQA--------------TLELNAS-DDRGIDVVRNKIKQFAQTKISLPPGRHKIIILD 116
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ + +++
Sbjct: 117 EADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSR 176
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++IA+ ED + + A+ ++R+AI +++ A + F D DQP P
Sbjct: 177 LLEIAKAEDVKYNSQGLQALIFTAEGDMRQAINNMQSTVA-GFGFVDDVNVFKIVDQPHP 235
Query: 580 LGWEEVL 586
L +++L
Sbjct: 236 LVIKKIL 242
>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
Length = 357
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ L+ + + + LK + DGN PHI+I G G GK + L ++ GDA
Sbjct: 36 WVEKYRPAFLDDIVGNTETIERLKIIAKDGNMPHIIISGMPGIGKTTSVLCLARQLLGDA 95
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 96 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKIVILD 139
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 140 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKR 199
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E S A + A+ ++R+AI L++ A
Sbjct: 200 LLQIIEAEQVRYSDDGLAALVFSAEGDMRQAINNLQSTHA 239
>gi|170058101|ref|XP_001864776.1| replication factor C subunit 3 [Culex quinquefasciatus]
gi|167877317|gb|EDS40700.1| replication factor C subunit 3 [Culex quinquefasciatus]
Length = 223
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 34/184 (18%)
Query: 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIVIYEVDKAAEHIQYL 479
SS +H+E+N ++ G+ I L + P + IV+ EVD+ + Q++
Sbjct: 3 VSSNYHIEVN--------HSDAGIHDRITQTLQVDPGGQREFKTIVLSEVDQLTKDAQHV 54
Query: 480 IKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL 539
++ M+ Y +C+ LC V + +VI + I +KE D+
Sbjct: 55 LRRTMEKYVATCRF-LC----------VNSTSRVIPAN------------SICKKEGIDI 91
Query: 540 SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP-LGWEEVLIELAAEILADPS 598
A +I K+ NLR+AI+ LEACK YPF Q +P + W+ ++A +I+ + S
Sbjct: 92 PPELATRITQKSDYNLRRAILMLEACKVQQYPFTVGQDLPEIDWQVFFRKMANQIVQEQS 151
Query: 599 PKRL 602
P++L
Sbjct: 152 PQKL 155
>gi|83273766|ref|XP_729542.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23487642|gb|EAA21107.1| Drosophila melanogaster BcDNA.LD06837, putative [Plasmodium yoelii
yoelii]
Length = 363
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 120/284 (42%), Gaps = 22/284 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K+ P SL+ H+ LK+L V + PHI+ G G GK L+ EI+ D
Sbjct: 16 WLEKYAPRSLDELNIHKDITTRLKKLSVHNDLPHIIFYGSPGGGKSTRIDCLIKEIFKDE 75
Query: 408 CWNEK------WPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEVS 460
+ ++ + V S +H+EL L K + ++KE+ + S
Sbjct: 76 KIIRRPENITNTENKININVIQSNYHLELQCFELGTKDKIIVQNIIKELCSYKSSASFFS 135
Query: 461 NA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ V + + +E Q ++ ++ Y + ++IL E IIE +K+ C I+V
Sbjct: 136 KKPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRV 195
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSM---TFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
P EI VL I E+ S F + +NLRK IMALE N
Sbjct: 196 PLPTEEEIFTVLKNICDNENVSSSYNSTNFFKTLINIHGRNLRKCIMALEMTVYSN---- 251
Query: 574 DDQP---IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLA 614
D+P I + + EL + +P+ ++ KIQ L+
Sbjct: 252 SDKPHHSISVA-HTYINELCNFVFVNPTQVKIKECVTKIQSLIT 294
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 104/223 (46%), Gaps = 23/223 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P++L+ + H+ +++ + PH+L G G+GK + +A+ +IYG+
Sbjct: 41 WVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYGN- 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN---AMI 464
++ Q+L AS ++ +V+E N A + + +I
Sbjct: 100 ----EYRKQILELNASDDRGID---------------VVREQIKNFAEMRTLYSKGFKLI 140
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
V+ E D + Q ++ +++ YT + + + C II ++++ C + P EI
Sbjct: 141 VLDEADMMTQAAQSALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEI 200
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ + Q+ E +L+ + +K ++R+A+ L+AC A
Sbjct: 201 EKRIKQVVEAEHVNLTEDGKQALLKLSKGDMRRALNILQACHA 243
>gi|443920619|gb|ELU40509.1| replication factor C subunit 4 [Rhizoctonia solani AG-1 IA]
Length = 411
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 25/248 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +LN + + LK + DGNCPHI+I G G GK L H + GDA
Sbjct: 20 WVEKYRPQTLNDIVGNVETIDRLKVIAQDGNCPHIIISGMPGIGKTTSIHCLAHAMLGDA 79
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ + G +K P + ++++
Sbjct: 80 -----YKEGVLELNASDERGIDV-----------VRGKIKAFAQKKVTLPPGRHKIVILD 123
Query: 468 EVDK--AAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
E D+ Q ++ M+ ++ + + L C IIE +++ C V++ E++
Sbjct: 124 EADRWVMTTGAQQAMRRTMEIFSSTTRFALACNQANKIIEPIQSRCAVLRYAKLRDEEVL 183
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-LNYPFAD------DQPI 578
+ ++++ E + + A+ +LR+A+ L++ A + AD DQP
Sbjct: 184 KRVLEVCEMEKVKYNDEGLTALLFTAEGDLRQALNNLQSTHAGFGFVSADNVFRVCDQPH 243
Query: 579 PLGWEEVL 586
P+ +E++
Sbjct: 244 PVIVQEII 251
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 21/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ + + LK V N PH+L G G GK A +++++ EI+G
Sbjct: 7 IWIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFG- 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMI 464
E W + +ELN A+ + + + +++D + P E +I
Sbjct: 66 ----ETWRN----------NFIELN----ASDERGIDIIRHKVKDFARMAPLGEADFKVI 107
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+ + + IL C IIE +++ C V + P +
Sbjct: 108 FLDEADALTNDAQSALRRTMERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAV 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ + IA +E +S + I A ++RKAI AL+A L
Sbjct: 168 TKRIKFIASEEGLRVSDGGLSAIEYVAGGDMRKAINALQAAALLG 212
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 16/279 (5%)
Query: 341 IEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
IE+ +P W +K++P L H ++LK+ + N PH+L G G+GK + +AL
Sbjct: 19 IEQNKP-WVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALT 77
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E++G E T+VL AS + ++ + +A + + +++L P
Sbjct: 78 KELFGP----ELMKTRVLELNASDERGI--SIVREKVKNFARLTVTTPSKEDLERHPCPP 131
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
+I++ E D Q ++ M+ Y++ + L C II+ + + C + P
Sbjct: 132 YKIIILDEADSMTADAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLD 191
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFADDQPIP 579
+ L IA +E L+ KI ++ +LRK I L++ KA+ Y D+ I
Sbjct: 192 NSNALTRLQYIASEESLTLADGALDKILDISEGDLRKGITLLQSVAKAVAY--LDNAEIT 249
Query: 580 LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVH 618
E ELA + P P L +V K L E ++
Sbjct: 250 TSQVE---ELAGVV---PEPVLLELVNKIESKDLKEIIN 282
>gi|146324243|ref|XP_753175.2| replication factor C subunit [Aspergillus fumigatus Af293]
gi|129557997|gb|EAL91137.2| replication factor C subunit [Aspergillus fumigatus Af293]
gi|159127094|gb|EDP52210.1| replication factor C subunit [Aspergillus fumigatus A1163]
Length = 389
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 109/233 (46%), Gaps = 14/233 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W DK++P++L + +LK ++ PH+L G G+GK + +AL ++YGDA
Sbjct: 21 WQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPHLLFHGPPGTGKTSTILALARQLYGDA 80
Query: 408 CWNEKWPTQVLVPVAS---SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
++ VL AS S H V++ + A+ + ++E +P ++
Sbjct: 81 DMSQ----MVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLRE-------SPYNMFKLV 129
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ I++ Y + + + ++ ++ + C ++ P I
Sbjct: 130 ILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNNIHKLLPALISRCARLRFPPLRPSAI 189
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577
+L+Q+A E+ + ++T + ++R+A+ L+ C + ++DD+P
Sbjct: 190 RTLLLQVATTENIQVRPEALEYLSTTSHGDMRQALAVLQECHLNSTFWSDDEP 242
>gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica]
gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGK----RALAMALLH-E 402
W +K++P L+ + H + LK + DGN P++LI G G GK LA LL +
Sbjct: 20 WVEKYRPMYLDDVVGHTETVERLKIMAKDGNIPNLLISGLPGIGKTTSVHCLARTLLGPQ 79
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+Y DA VL AS +E+ + G +K P +
Sbjct: 80 LYKDA---------VLELNASDDRGIEV-----------VRGKIKNFAQKKVTMPPGKHK 119
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q +K M+ Y+D+ + C IIE++++ C +++
Sbjct: 120 IIILDEADSMTAGAQNALKRTMELYSDTTRFAFACNQSNKIIEAIQSRCAILRFGRLSNE 179
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+++E L+ I E+ S + + A+ ++R+AI L+
Sbjct: 180 QVLERLLHIVEAENVQCSDDGLSALIFSAEGDMRQAINNLQG 221
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 17/228 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + LK V + N PH+L G G+GK A L H+++G
Sbjct: 12 LWAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFG- 70
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + +L AS +++ + VKE +T + ++++
Sbjct: 71 ----ENYRQYMLELNASDERGIDV-----------IRSKVKEFART-RVTANIPFKIVLL 114
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ +M+ YT + + IL IIE +++ C V + P +++
Sbjct: 115 DEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVIS 174
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
L IA +E ++ I ++ ++R+AI L+A AL D
Sbjct: 175 RLKWIANQEKVEVDEEALEAIHDLSEGDMRRAINILQAAAALGRVTVD 222
>gi|344303413|gb|EGW33662.1| hypothetical protein SPAPADRAFT_59031 [Spathaspora passalidarum
NRRL Y-27907]
Length = 324
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 110/248 (44%), Gaps = 25/248 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + LK + DGN P+++I G G GK L HE+ G
Sbjct: 13 WVEKYRPYKLQDIVGNEETVERLKIIAKDGNMPNMIISGLPGIGKTTSVHCLAHELLG-- 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + L AS +++ N +K+ + P + +I++
Sbjct: 71 ---EYYHQATLELNASDDRGIDVVRNK-----------IKQFAQTKIVLPPGRHKIIILD 116
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ + E++
Sbjct: 117 EADSMTPGAQQALRRTMEIYSNSTRFAFACNQSSKIIEPLQSRCAILRYNKLADEEVLAR 176
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++IA+ E+ + + A+ ++R+AI L++ A + F + DQP P
Sbjct: 177 LLEIAKMEEVKYNSEGLQALIFTAEGDMRQAINNLQSTVA-GFGFVNDVNVFKIVDQPHP 235
Query: 580 LGWEEVLI 587
L + +L+
Sbjct: 236 LVIQNILL 243
>gi|406605842|emb|CCH42728.1| Replication factor C subunit 4 [Wickerhamomyces ciferrii]
Length = 324
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 25/256 (9%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL W +K++PS L + LK + DGN PH++I G G GK L HE
Sbjct: 6 KLELPWVEKYRPSKLEDVTGNEETISRLKLISQDGNMPHLIISGLPGIGKTTSIHCLAHE 65
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ GDA + VL AS +++ N +K+ P+ +
Sbjct: 66 LLGDA-----YSNAVLELNASDDRGIDVVRN-----------KIKQFAQKKVSLPQGRHK 109
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ M+ Y+++ + C IIE +++ C +++
Sbjct: 110 IIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNVSNKIIEPLQSRCAILRYTKLSDE 169
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD-------- 574
E+++ L+ I + E + S + A+ ++R+AI L++ A + F +
Sbjct: 170 EVLKRLLDIIKFEKVEYSNDGLEALIFTAEGDMRQAINNLQSTVA-GFGFVNGENVFKIV 228
Query: 575 DQPIPLGWEEVLIELA 590
D P PL +++++E+
Sbjct: 229 DSPHPLIIKKMILEVV 244
>gi|359415519|ref|ZP_09207966.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
gi|358034122|gb|EHK02580.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
Length = 315
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 98/218 (44%), Gaps = 22/218 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +KH+P++L+ + + L+ V + + PH+L G G+GK A+AL ++YGD
Sbjct: 5 WTEKHRPNTLSEVVGQNEITERLEAFVEEESIPHMLFSGPPGTGKTTCAVALAKDLYGD- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+W + AS ++ +V+E + A T ++ +I+
Sbjct: 64 ----EWKQNFMETNASEERGID---------------VVREKIKDFARTKAINAEYKIIF 104
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
E D Q ++ M+ ++D+C+ I+ C II+ +++ C V + + ++
Sbjct: 105 LDEADSLTSDAQQALRRTMEQFSDNCRFIMSCNYSSKIIDPIQSRCAVFRFNRLEEGDVK 164
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ ++ E+F +S + + +LR+ L+
Sbjct: 165 SYIQRLGESENFSISEDAVEAVMRVSDGDLRRVTNVLQ 202
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 117/276 (42%), Gaps = 24/276 (8%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
+ W +K++P SL+ + LK V PH+L G +G+GK A+AL E+
Sbjct: 1 MEDVWVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALAREL 60
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP---EVS 460
+G E W +S H ELN + + +G+V+ A T +V
Sbjct: 61 FG-----ENWR--------ASFH--ELNASDERG-----IGIVRTKIKEYARTAAPNDVG 100
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
+I + E D Q ++ M+ Y+ +C+ IL C IIE +++ C V + P
Sbjct: 101 FKIIFLDEADALTPDAQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLK 160
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
+ +I + L IA E ++ I + ++RKAI L+ A++ D+ +
Sbjct: 161 SEDIKKRLKYIADSEGKKITEDALNAIVYISGGDMRKAINILQMSAAISDTI-DEGVVYK 219
Query: 581 GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEF 616
E ++L + R K+ KLL E
Sbjct: 220 ATGLAKREDVEDVLKKALAGDFIEARNKLNKLLVEL 255
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 6/221 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H +LK+ +V N PH+L G G+GK + +AL E+YG
Sbjct: 22 WVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP- 80
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + + Q +A + + ++L P +I++
Sbjct: 81 ---DLIKSRVLELNASDERGIA--IVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILD 135
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + P ++
Sbjct: 136 EADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKPLANDNAVQR 195
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
L I ++E+ ++ + + T + +LR+AI L++ L
Sbjct: 196 LRYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARL 236
>gi|428671876|gb|EKX72791.1| replication factor C subunit 4, putative [Babesia equi]
Length = 324
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 24/225 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ I + + L+ + +GN P++L+ G G+GK + L E+ G
Sbjct: 7 IWIEKYRPGSLDEIIGNPEITKRLQYIAKEGNMPNLLLCGPPGTGKTTSVLCLAREMLG- 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA----ITPEVSNA 462
++ + V+ AS V++ V+E N A I P +
Sbjct: 66 ----AQFKSGVIELNASDDRGVDV---------------VRESIKNFAKKSLILPPNKHK 106
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ EVD E Q ++ IM+ Y+++ + L C IIE +++ C VI+
Sbjct: 107 IVILDEVDSMTEAAQQALRRIMEIYSNTTRFALACNQSTKIIEPIQSRCAVIRFTKLKDE 166
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++++ L+ I + ED + + A +LR+A+ L+ A
Sbjct: 167 QVLQRLMDICKLEDLKYTNDGMEALLFSADGDLRRAVNNLQNVSA 211
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 107/235 (45%), Gaps = 22/235 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + H ++ V + PH+L G G+GK + +A E++G
Sbjct: 17 WVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFG-- 74
Query: 408 CWNEKWPTQVLVPVASSAHHVELN----VNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
E + VL AS +++ +N + + A+ S +
Sbjct: 75 ---ETSNSSVLELNASDDRGIDVARGRILNFASTKRIAIQA------------GTASFKL 119
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D Q ++ I++ +TD+ + L C II ++++ C + P + +
Sbjct: 120 IILDEADAMTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQ 179
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
I+ L + ++E ++S A + T AK ++R+ + L++C ++ +P ++ I
Sbjct: 180 ILPRLQAVVKEESLEMSPDGAKALLTLAKGDMRRILNILQSC-SMAFPVINESNI 233
>gi|451994907|gb|EMD87376.1| hypothetical protein COCHEDRAFT_1144919 [Cochliobolus
heterostrophus C5]
Length = 353
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L H++ GDA
Sbjct: 31 WVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLAHQLLGDA 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 91 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRQKLVILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +++
Sbjct: 135 EADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRR 194
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++QI ED S A + A+ ++R+AI L++
Sbjct: 195 IMQICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQS 231
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 23/240 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ L+ + + + LK + DGNCPHI+I G G GK L H++ GDA
Sbjct: 22 WVEKYRPTVLDDVVGNSDTIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQLLGDA 81
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 82 -----YKEGVLELNASDDRGIDVVRN-----------KIKTFAQKKVTLPPGRHKIIILD 125
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++++ + L C IIE +++ C +++ EI++
Sbjct: 126 EADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKR 185
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + + + ++ ++R+AI L++ + D DQP P+
Sbjct: 186 LLEICEMEKVEYNDDGLTALIFTSEGDMRQAINNLQSTYSGFGFVSGDNVFKVCDQPHPI 245
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 6/233 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P ++N H +L + N PH+L G G+GK + +AL E++G
Sbjct: 31 WVEKYRPKTINEISAQEHTTSVLSRTLTSANLPHMLFYGPPGTGKTSTILALARELFGP- 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ + +VL AS + + + N + + + P +I++
Sbjct: 90 ---DNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVSSDGKTYPCPPYKIIILD 146
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ IM+ Y + L C IIE + + C + P
Sbjct: 147 EADSMTQDAQGALRRIMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFTPLDPDSASAR 206
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
L IA+ E+ D+S + + + +LR+AI L++ L + D P P+
Sbjct: 207 LSYIAQAENIDISKPVIDALISTSHGDLRRAITYLQSAARL--AGSSDPPTPI 257
>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
Length = 330
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 16/233 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + +LKE++ N PH++ G G+GK + AL HE++G
Sbjct: 6 WVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFGKE 65
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN-----A 462
NE+ VL AS + NV + Y + + K I E +
Sbjct: 66 NINER----VLELNASDDRGI--NVVREKIKAYTRISISKN-----KINTETNEQLPPWK 114
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++V+ E D E Q ++ I++ Y++ + IL C I + + + C + +
Sbjct: 115 LVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPIN 174
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
E L+ I + E+ D+S +KI + +LR+A+ L+ C ++ D
Sbjct: 175 IKKEKLLYICKNENIDISDNALSKIIETTQGDLRRAVSVLQLCACIDSKITVD 227
>gi|339061416|gb|AEJ34720.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
Length = 227
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 11/224 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
F+ +K++P + F+ + + LK L + + PHI+I G SGSGK+ L LL +Y
Sbjct: 2 FFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYDE 61
Query: 406 --DACWNEKW-----PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI---RDNLAI 455
+ K+ T+ + + S +H+ + + KY L ++K+ +
Sbjct: 62 DVNILRKRKYNINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFDIF 121
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ IVI+ ++ A + Q ++ M+ Y +C+ I+ C + I++ +++ C+
Sbjct: 122 KTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAI 559
V P I V+ IA E+ L+ I NL+ AI
Sbjct: 182 VPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAI 225
>gi|164659418|ref|XP_001730833.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
gi|159104731|gb|EDP43619.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
Length = 371
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 29/249 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + L+ + GNCPH+L+ G G GK L H + GDA
Sbjct: 17 WVEKYRPRYLRDVVGNSATVERLRAIEEHGNCPHLLLSGLPGIGKTTSVHCLAHALLGDA 76
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + A K +L P + +I
Sbjct: 77 -----YKEAVLELNASDDRGIDVVRSKIKAFAQKKVSL--------------PPGRHKII 117
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
V+ E D Q ++ M+ Y + + C IIE +++ C +++ E+
Sbjct: 118 VLDEADSMTPGAQQALRRTMEIYAPTTRFCFACNQSNKIIEPIQSRCAILRFGRISDEEL 177
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQP 577
+ L+QI E S A + A+ ++R+A+ L++ + Y D DQP
Sbjct: 178 LRRLLQICEAEHVKYSDEGLAAVVFTAEGDMRQAVNNLQSTWTGMGYVSPDNVFKVCDQP 237
Query: 578 IPLGWEEVL 586
PL +VL
Sbjct: 238 HPLVVRDVL 246
>gi|159115535|ref|XP_001707990.1| Replication factor C, subunit 5 [Giardia lamblia ATCC 50803]
gi|157436099|gb|EDO80316.1| Replication factor C, subunit 5 [Giardia lamblia ATCC 50803]
Length = 373
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 36/272 (13%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K+ P+ L H +L + N PH+L+ G GSG+ + + +YG
Sbjct: 1 MWCNKYTPTQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRVLGYIRSVYGV 60
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAIT 456
+ P+ +L V + S+A H+ELN + N + + ++KE +I
Sbjct: 61 QTLD-YIPSTMLYETNTDTCEVNILSTACHLELNPSEMGNHDVFIIQTVLKETASTSSIG 119
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ ++V+ + DK + Q ++ +M+ Y +CKLIL E +I + + C I+V
Sbjct: 120 DKFK--VVVLQDADKLSFTAQQALRRLMEQYAATCKLILMAESISGLIPPIVSRCFCIRV 177
Query: 517 ----DPPVTHEIMEV-----LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
D + H + L+Q KE ++AT A+ +LR+A + L+
Sbjct: 178 PGFSDEEIVHALETTITKHRLMQGFTKESLH---ALLPEVATVARGDLRRAFLLLQ---- 230
Query: 568 LNYPFADD------QPIPLGWEEVLIELAAEI 593
Y +A Q + WE + +A+++
Sbjct: 231 -TYQYASSKKNVSVQSLVPEWETLCTNIASQV 261
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 24/239 (10%)
Query: 332 TSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSG 391
T+ QKAV ++ P W +K++P SL+ + H+ +++ + G PH+L G G+G
Sbjct: 41 TAADQKAVDDKEGLP-WVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTG 99
Query: 392 KRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD 451
K + +AL +YG A H +ELN + + +V+E
Sbjct: 100 KTSTVLALARRLYGS---------------AYKKHILELNASDDRG-----IDVVREQIK 139
Query: 452 NLAITPEVSN---AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
N A+T + + ++++ E D + Q ++ +++ +T + + + C I +++
Sbjct: 140 NFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQ 199
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ C + P EI + ++ +KE +L+ + ++ ++R+A+ L+AC A
Sbjct: 200 SRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTEDGRDALLKLSRGDMRRALNVLQACHA 258
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L++ V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL IIE +++ +I+ P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ L IA E +S I + ++R+AI AL+
Sbjct: 165 VFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQ 204
>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
1728]
gi|73920752|sp|Q9HI47.2|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 21/221 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ Q LK V PH+L G G+GK + A+AL E++GD
Sbjct: 4 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGD 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE--VSNAMI 464
+ W E + VE+N A+ + + + +I+D I P + ++
Sbjct: 64 S-WKE--------------NMVEMN----ASNENGIDVIRNKIKDIARIKPSNPLGFKIL 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D+ Q ++ M+ Y+++ + I C II +++ V++ P I
Sbjct: 105 FLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYI 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
L +IA+ E F + + + ++RKAI L+A
Sbjct: 165 SRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAV 205
>gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
Length = 327
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 110/247 (44%), Gaps = 24/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK LV DGN PH++I G G GK L +E+ G
Sbjct: 13 WVEKYRPHKLDDIVGNEETVERLKLLVEDGNMPHMIISGLPGIGKTTSIHCLAYELLGP- 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + L AS +++ N +K+ P + +I++
Sbjct: 72 ---ELYQQATLELNASDDRGIDVVRN-----------KIKQFAQTKISLPAGRHKIIILD 117
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ +++E
Sbjct: 118 EADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYTKLSDEQVLER 177
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L+++ + ED + + A+ ++R+AI L++ A + F + DQP P
Sbjct: 178 LLEVTKLEDVKYNSEGLQALIFTAEGDMRQAINNLQSTVA-GFGFVNDINVFKIVDQPHP 236
Query: 580 LGWEEVL 586
L +++L
Sbjct: 237 LVIKKIL 243
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 21/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L + + L+ V G+ PH+L G +G GK A+AL E +G
Sbjct: 8 WIEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREFFG-- 65
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E W AS +++ N +I+ +P V++
Sbjct: 66 ---ETWQMNFRELNASDERGIDVVRN--------------QIKQFARTSPLGGATFKVLF 108
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
E D Q ++ M+ Y +C+ IL C II+ +++ C + + +
Sbjct: 109 LDEADALTPDAQAALRRTMENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVA 168
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E + ++A E+ L+ IA A+ ++RKA+ AL+ L+
Sbjct: 169 EQVRRVAAAEEISLTDDAVHAIAYIAEGDMRKALNALQGAAILS 212
>gi|299756140|ref|XP_001829123.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
gi|298411540|gb|EAU92758.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
Length = 323
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 26/265 (9%)
Query: 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
PF +K++P L+ + + + LK + DGNCPH++I G G GK L H++ G
Sbjct: 2 PFRVEKYRPQVLDDIVGNTDTIERLKVIARDGNCPHLIISGMPGIGKTTSIHCLAHQLLG 61
Query: 406 DACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
DA + VL AS +++ N +K P + +I+
Sbjct: 62 DA-----YKEGVLELNASDERGIDVVRN-----------KIKAFAQKKVTLPPGRHKIII 105
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + L C IIE +++ C +++ E++
Sbjct: 106 LDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEVL 165
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPI 578
+ L++I E + + A+ ++R+AI L++ + AD DQP
Sbjct: 166 KRLLEICEMEKVQYNDDGLTALIFTAEGDMRQAINNLQSTHSGFGFVSADNVFKVCDQPH 225
Query: 579 PLGWEEVLIE-LAAEILADPSPKRL 602
P+ + ++ L EI DP+ ++L
Sbjct: 226 PIVVQSMIRACLKGEI--DPALEKL 248
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 22/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L+ H LK + + P++L GQ+G GK A+A+ E+YGD
Sbjct: 15 IWVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYGD 74
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMI 464
+ W +H +ELN + + + +V++ N A V +I
Sbjct: 75 S-WQ--------------SHFLELNASDERG-----IDVVRDQIKNFARHDPGAVDFQII 114
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ ++D + I+ C II+ +++ C V + P +
Sbjct: 115 FLDEADSLTSDAQAALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAV 174
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +A +E + + + A ++RKAI AL+A +
Sbjct: 175 AGYVQYVADEEGIETTDDGIEALVYAADGDMRKAINALQAAAVMG 219
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ + H+ +++ + G PH+L+ G G+GK + +AL +YG A
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN---AMI 464
H +ELN + + +V+E N A+T + + ++
Sbjct: 116 YRK---------------HILELNASDDRG-----IDVVREQIKNFAMTKVLFSKGFKLV 155
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ +++ +T + + + C I ++++ C + P EI
Sbjct: 156 ILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEI 215
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ ++ +KE +L+ + ++ ++R+A+ L+AC A Y D+ +
Sbjct: 216 QVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACHA-AYDIVDETAV 268
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 17/224 (7%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
+ W +K++P++L+ + LK V + + PH+L G +G GK A+AL E+
Sbjct: 1 MEQIWIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREM 60
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
+G E W + AS +++ + G +KE A E +
Sbjct: 61 FG-----ELWQHNLHELNASDERGIDV-----------VRGKIKEFART-APLGEKGFKI 103
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ Y+ +C+ ++ C II+ +++ C V + P +
Sbjct: 104 IFLDEADALTGAAQAALRRTMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAED 163
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ + L +A KE+ ++ + A+ +LR+AI L+ A
Sbjct: 164 LEKYLKFVASKENVKVTKEAFESLTYLAQGDLRRAINGLQMAAA 207
>gi|453083984|gb|EMF12029.1| replication factor C subunit 3 [Mycosphaerella populorum SO2202]
Length = 399
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 20/263 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P++L H+ + + V PH+L+ G G+GK + +AL IYG
Sbjct: 49 WVEKYRPNALADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 106
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMG-LVKEIRDNLAITPEVSNAM 463
N+ VL AS +++ + ++ K G K RD+ +I +
Sbjct: 107 --NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKTRRDDSSI---AHYKL 161
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D Q ++ IM+ YT + + + + ++ + C + P +
Sbjct: 162 IILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDAD 221
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF-------ADDQ 576
I +++ ++ +E+ ++ T A + T +K ++R+A+ L+AC A + P DD+
Sbjct: 222 IRQLIDRVITEENVNIEPTAADSLVTLSKGDMRRALNVLQACHASSTPLHIPGEPVVDDK 281
Query: 577 PIPLGWEEVLIELAAEILADPSP 599
IP + + E + +A P P
Sbjct: 282 AIP--RDLITQETIYDCIAAPHP 302
>gi|256077102|ref|XP_002574847.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|353229166|emb|CCD75337.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 468
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 30/224 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKR----ALAMALLHEI 403
W +K++P L + + + L DGN P+I+I G G GK LA LL
Sbjct: 155 WVEKYRPIELEDIVGNENTICRLSVFARDGNLPNIIIAGPPGCGKTTSILCLARTLLKSA 214
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVS 460
Y +A VL AS+ +E+ + + A K +L PE
Sbjct: 215 YKEA---------VLELNASNERGIEVVRTKIKMFAQKKVSL--------------PEGR 251
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
+I++ E D E Q ++ IM+ Y+ + + L C D +IE +++ C V++
Sbjct: 252 QKIIILDEADSMTEGAQQALRRIMELYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLT 311
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ ++M L++++R E + I A ++R+A+ L++
Sbjct: 312 SAQVMARLLEVSRFEGVSYTEEGLEAIVFTADGDMRQALNNLQS 355
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 19/229 (8%)
Query: 341 IEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
IE+L W +K++P SL + + + L + V + N PH+L G G+GK A AL
Sbjct: 5 IEEL--LWTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALA 62
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
H++YGD + + +ELN + + + VKE + P++
Sbjct: 63 HDLYGDNY---------------TQYMLELNASDERGID-TIREKVKEFARS-KTPPDIP 105
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ +M+ Y+ + + IL II+ +++ C + P
Sbjct: 106 FKIVLLDEADNMTADAQQALRRLMELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLG 165
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+++ L IA KE+ I ++ ++RKAI L+ +L
Sbjct: 166 KDDVVGRLRYIAEKENVKYDEDALEAIYDISEGDMRKAINILQTAASLG 214
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 24/234 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + H+ ++E + PH+L G G+GK + +A +IYG
Sbjct: 41 WVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGTGKTSTILACAKKIYG-- 98
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
K+ Q+L AS ++ +V+E N A T ++ N+ ++
Sbjct: 99 ---PKFRNQLLELNASDERGID---------------VVREQIKNFASTKQIFNSGFKLV 140
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C I ++++ C + P + EI
Sbjct: 141 ILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLSSKEI 200
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
L + + E+ ++S A++ A ++RK + L+AC A Y F D+ +
Sbjct: 201 CLKLDYVIKNENINISEKGKAELVKLADGDMRKGLNILQACHA-AYDFIDEDAV 253
>gi|449300715|gb|EMC96727.1| hypothetical protein BAUCODRAFT_34119 [Baudoinia compniacensis UAMH
10762]
Length = 350
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 29 WVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHLIISGMPGIGKTTSILCLARQLLGDA 88
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 89 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKIVILD 132
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 133 EADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKR 192
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L QI + E+ + S A + A+ ++R+AI L++ A
Sbjct: 193 LYQICKAENVEYSDDGIAALVFSAEGDMRQAINNLQSTFA 232
>gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
DSM 2375]
gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
gi|222435032|gb|EEE42197.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2375]
gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
Length = 315
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 22/219 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ I + L++ V + + P+++ G +G GK A+AL+ I G
Sbjct: 5 WVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E W L AS A ++ N +I++ + P V +I+
Sbjct: 63 ---EYWRQNFLELNASDARGIDTVRN--------------DIKNFCRLKP-VGAPFRIIF 104
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P EI
Sbjct: 105 LDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIA 164
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L I E F+ + I A+ ++RKA+ L+A
Sbjct: 165 NRLKYICTSEGFEYTDGGIEAIEYFAEGDMRKAVNVLQA 203
>gi|237843887|ref|XP_002371241.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|211968905|gb|EEB04101.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|221483809|gb|EEE22121.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
gi|221504190|gb|EEE29865.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
Length = 336
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 112/255 (43%), Gaps = 23/255 (9%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
L W +K++P +L+ + + + L+ + +GN PH+++ G G+GK + + L ++
Sbjct: 30 LDSIWIEKYRPETLDDVVGNDQVMRRLRIIAREGNMPHLMLAGPPGTGKTSSVLCLCKQL 89
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
G +W L AS +++ ++ K+ KE RD P + +
Sbjct: 90 LGS-----RWRAYTLELNASDERTIDV---IREKVKH----FAKEKRD----LPAGRHKI 133
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ EVD E Q ++ IM+ ++D+ + L C +IE +++ C +++ +
Sbjct: 134 VILDEVDAMTEAAQQALRRIMEQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDSQ 193
Query: 524 IMEVLIQIARKEDFDLS------MTFAAKIATK-AKQNLRKAIMALEACKALNYPFADDQ 576
++ L Q+ E ++ + F A + A NL+ + A N D
Sbjct: 194 LVRRLRQVCAMEALQVTDDGIEAIVFCADGDMRSALNNLQSTVSAFGVVNRENVEKVCDN 253
Query: 577 PIPLGWEEVLIELAA 591
P P +L+E A
Sbjct: 254 PPPEAVRSMLMECLA 268
>gi|378730119|gb|EHY56578.1| replication factor C subunit 4 [Exophiala dermatitidis NIH/UT8656]
Length = 352
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L + GDA
Sbjct: 31 WVEKYRPVYLDDIVGNSETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARTLLGDA 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 91 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKIVILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 135 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVQR 194
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E S A + A+ ++R+AI L++ A
Sbjct: 195 LLQIIEAEKVQYSEDGLAALVFSAEGDMRQAINNLQSTWA 234
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 103/227 (45%), Gaps = 6/227 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H ++LK+ + N PH+L G G+GK + +AL ++YG
Sbjct: 20 WVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALARQLYGPR 79
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ Q +A + + +++L P +I++
Sbjct: 80 LFK----SRVLELNASDDRGI--SIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ ++ Y+ + L C II+ + + C + ++
Sbjct: 134 EADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+ I KE+ ++ + + + +LRKAI L++ L++ A+
Sbjct: 194 IRYIVEKENLNVDEDVPETLLSMSNGDLRKAITFLQSASRLSFALAN 240
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 26/225 (11%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P SL+ + L+ + + PH+L G +G GK + A+ ++Y
Sbjct: 15 REIWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVY 74
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
GD W + +ELN + Q + +RD + S
Sbjct: 75 GDDNWR--------------GNFLELNASDQRG--------IDVVRDRIKGFARSSFGGD 112
Query: 463 --MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ +IA E +++ + A ++R+AI +L+A
Sbjct: 173 DAAVAAQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|398390788|ref|XP_003848854.1| replication factor C subunit 4 [Zymoseptoria tritici IPO323]
gi|339468730|gb|EGP83830.1| hypothetical protein MYCGRDRAFT_76271 [Zymoseptoria tritici IPO323]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRQKIVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L QI + E + S A + A+ ++R+AI L++ A
Sbjct: 194 LYQICQAEKVEYSDDGIAALVFSAEGDMRQAINNLQSTHA 233
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 106/241 (43%), Gaps = 25/241 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + + + LK + DGNCPHI+I G G GK L H++ G+A
Sbjct: 19 WVEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQMLGEA 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 79 -----YKDGVLELNASDERGIDVVRN-----------KIKAFAQKKVTLPPGRHKIVILD 122
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ EI++
Sbjct: 123 EADSMTSGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEILKR 182
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++I E + + ++ ++R+AI L++ + + F DQP P
Sbjct: 183 LLEICEMEQVQYNDDGLTALIFTSEGDMRQAINNLQSTHS-GFGFVSGDNVFKVCDQPHP 241
Query: 580 L 580
+
Sbjct: 242 I 242
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN H LK V + PH+L G +G+GK A ++ E+Y D
Sbjct: 49 WIEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDD 108
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN + Q + +V++ + A + S+ +I
Sbjct: 109 -WQENF--------------LELNASDQRG-----IDVVRDRIKDFARSSFGGYSHRIIF 148
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + I
Sbjct: 149 LDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIE 208
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +IA ED ++ + A ++RKAI AL+A +
Sbjct: 209 AQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVMG 252
>gi|441432263|ref|YP_007354305.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|371945082|gb|AEX62903.1| putative replication factor C small subunit [Moumouvirus Monve]
gi|440383343|gb|AGC01869.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 391
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 114/264 (43%), Gaps = 18/264 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
F +K++P + F+ +++ L L + + PHI+I G G+GK+ L L +Y
Sbjct: 2 FLFEKYRPKNFREFLFNKNTLDQLNYLASNEDIPHIIISGPPGAGKKTLVKFFLEALYDS 61
Query: 406 --DACWNEKW-----PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE--IRDNLAIT 456
+ K+ T+ + + S +H+ + + KY L ++K+ + + I
Sbjct: 62 DVNVLSKMKYNINGSSTKKEIEIFQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFNIF 121
Query: 457 PEVSN-AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
IVIY ++ A + Q ++ M+ Y +C+ ++ + I + +++ C+
Sbjct: 122 KTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFVMVSNNLSKIFDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I V+ I+ E+ L I N+++AI L++ + + PF
Sbjct: 182 VSQPSIDDIKNVVTHISLMENIKLENDDMNFILNNCDNNIKRAIWILDSKRLNSDPF--- 238
Query: 576 QPIPLGWEEVLIELAAEILADPSP 599
+ +EV + IL P
Sbjct: 239 ----ISLDEVFDSVVESILKSLDP 258
>gi|124803688|ref|XP_001347790.1| replication factor C subunit 5, putative [Plasmodium falciparum
3D7]
gi|23496041|gb|AAN35703.1|AE014837_45 replication factor C subunit 5, putative [Plasmodium falciparum
3D7]
Length = 349
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 18/232 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD- 406
W +K+ P S++ H+ + L++L + PHI+ G G GK L+ EI+ D
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 407 ------ACWNEKWPTQVLVPVASSAHHVELNV-NLQANAKYALMGLVKEIRDNLAITPEV 459
C ++ + V S +H+EL L K + ++KE+ +
Sbjct: 62 KIIRRPECITNA-ENKININVVQSNYHLELQCFELGNKDKIIVQSIIKELCSYKSSASFF 120
Query: 460 SNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
S + V + + +E Q ++ ++ Y + ++IL E IIE +K+ C I+
Sbjct: 121 SKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIR 180
Query: 516 VDPPVTHEIMEVLIQIARKED----FDLSMTFAAKIATKAKQNLRKAIMALE 563
V P EI VL I ++E+ F F I T + NLRK IMALE
Sbjct: 181 VPLPSEEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGR-NLRKCIMALE 231
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + L+ + + PH+L G +G GK A A+ IY
Sbjct: 16 REIWIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 75
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W + +ELN + Q + +V++ N A + +
Sbjct: 76 GD-----DW----------RGNFLELNASDQRG-----IDVVRDRIKNFARSSFGGHDYR 115
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 116 IIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 175
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
I + IA+ E +L+ + A ++R+AI +L+A
Sbjct: 176 AIADQTRDIAKAEGIELTEDGLDALVYAAGGDMRRAINSLQAA 218
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 17/220 (7%)
Query: 350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACW 409
++ +P L + L E V G+ PH+L G G GK A+AL E+YGD+
Sbjct: 2 ERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGDS-- 59
Query: 410 NEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEV 469
W + VL AS +++ + VKE + P V ++++ E
Sbjct: 60 ---WRSSVLELNASDERGIDV-----------IREKVKEFARTIPTGP-VPFKLVILDEA 104
Query: 470 DKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLI 529
D Q ++ IM+ Y + + IL IIE +++ C + + +P ++E L
Sbjct: 105 DNMTSDAQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLR 164
Query: 530 QIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
QIA++ +++ I ++ ++RKAI L+ N
Sbjct: 165 QIAKETGVEVTEDGLEAIWEVSQGDMRKAINTLQTTTTTN 204
>gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC
35061]
gi|158513780|sp|A5UMF3.1|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter
smithii ATCC 35061]
Length = 315
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 22/219 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ I + L++ V + + P+++ G +G GK A+AL+ I G
Sbjct: 5 WVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E W L AS A ++ N +I++ + P V +I+
Sbjct: 63 ---EYWRQNFLELNASDARGIDTVRN--------------DIKNFCRLKP-VGAPFRIIF 104
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P EI
Sbjct: 105 LDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIA 164
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L I E F+ + I A+ ++RKA+ L+A
Sbjct: 165 NRLKYICTSERFEYTDGGIEAIEYFAEGDMRKAVNVLQA 203
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ + H+ +++ + G PH+L+ G G+GK + +AL +YG A
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN---AMI 464
H +ELN + + +V+E N A+T + + ++
Sbjct: 116 YRK---------------HILELNASDDRG-----IDVVREQIKNFAMTKVLFSKGFKLV 155
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ +++ +T + + + C I ++++ C + P EI
Sbjct: 156 ILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEI 215
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ ++ +KE +L+ + ++ ++R+A+ L+AC A Y D+ +
Sbjct: 216 QVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACHA-AYDIVDETAV 268
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L + Q L V N PH+L G G+GK A A+AL +++G
Sbjct: 7 IWVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLFG- 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
E W + +E+N + + + +V+ A T + +A +
Sbjct: 66 ----ENW----------RDNFIEMNASDERG-----IDVVRHKIKEFARTAPIGDAPFKI 106
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ Y+ C+ IL C IIE +++ C V K P
Sbjct: 107 IFLDEADALTPDAQAALRRTMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEA 166
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ + L++I E ++ + + + RKAI AL+ AL
Sbjct: 167 MRKRLLEICENEGVKITEDGLEALIYVSNGDFRKAINALQGAAALG 212
>gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 333
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 95 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LLQIIEAEKVEYSEDGLAALVFSAEGDMRQAINNLQSTFA 238
>gi|13242657|ref|NP_077672.1| EsV-1-187 [Ectocarpus siliculosus virus 1]
gi|13177457|gb|AAK14601.1|AF204951_186 EsV-1-187 [Ectocarpus siliculosus virus 1]
Length = 324
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 123/269 (45%), Gaps = 37/269 (13%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ- 435
G+ PH+L G GSGK L LL ++YG +V V ASS H +E++V +
Sbjct: 16 GDIPHLLFHGPRGSGKMTLVRHLLKKLYGPGVHRVTTEKRV-VETASSKHTIEIDVRVSN 74
Query: 436 -----------ANAKYALMGLVKEIRDNLAITP-----EVSNAMIVIYEVDKAAEHIQYL 479
AN Y + +KE+ +N +I +V + IV+ ++ Q
Sbjct: 75 YHIEMEPSDAGANDTYVVQHAIKEMANNGSIAAVFKNCDVRHKTIVLRGAGNLSKQAQAG 134
Query: 480 IKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL 539
++ M+ +T SC+L+L +IE +++ C +I+V P + E + I+I K
Sbjct: 135 LRRTMEKFTASCRLVLVSTFASRVIEPLRSRCVLIRVPLP-SAENLAAAIEIDDK----- 188
Query: 540 SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSP 599
++I + +++ +A+ +A A D+ + W + + + + + SP
Sbjct: 189 --ALVSQIVQSSGRSISRAMFMAKAGSA-------DKML---WVKYVESMCTGVFLEQSP 236
Query: 600 KRLVMVRGKIQKLLAEFVHPKLIL-LVMH 627
++L+ R + +LL V +IL +MH
Sbjct: 237 RKLIDARDSLNELLVAGVPASIILKTLMH 265
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L+ + LK+ V D N PH+L G G+GK +A L H++YGD
Sbjct: 7 LWTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
+ +L AS +E+ + VKE A T V N +
Sbjct: 67 -----NYRQYILELNASDERGIEV-----------IRSKVKE----FARTRVVGNVPFKI 106
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D Q ++ +M+ YT S + IL IIE +++ V + P +
Sbjct: 107 ILLDEADNMTADAQQALRRLMELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKRED 166
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
++E L I E I ++ ++R+AI L+A AL
Sbjct: 167 VVERLKYICSNEKVKCHEDALNTIFELSEGDMRRAINILQASAALG 212
>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
Length = 330
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 6/222 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + +LKE++ N PH++ G G+GK + AL HE++G
Sbjct: 6 WVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFG-- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E +VL AS + NV + Y + + K ++ P ++V+
Sbjct: 64 --KENISERVLELNASDDRGI--NVVREKIKAYTRISISKNKINSENNEPLPPWKLVVLD 119
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D E Q ++ I++ Y++ + IL C I + + + C + + E
Sbjct: 120 EADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEK 179
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L+ I + E+ D+S +KI + +LR+A+ L+ C ++
Sbjct: 180 LLYICKNENIDISDNALSKIIETTQGDLRRAVSVLQLCSCID 221
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 120/271 (44%), Gaps = 12/271 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L H +LK+ + N PH+L G G+GK + +AL E+YG A
Sbjct: 26 WVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELYGPA 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVI 466
++VL AS + + ++ K +A + + K +++ P +I++
Sbjct: 86 LMK----SRVLELNASDERGIAI---VRDKIKSFARLTVSKPSQNDREKYPCPPYKIIIL 138
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ Y++ + L C II+ + + C + P + +
Sbjct: 139 DEADSMTADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDSSNALS 198
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEE-- 584
+ +A++E KI ++ +LR+AIM L++ + Q L +E
Sbjct: 199 RVQYVAKEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHLDPPQITALTVDELA 258
Query: 585 --VLIELAAEILADPSPKRLVMVRGKIQKLL 613
V EL E++A + L ++ +++++
Sbjct: 259 GTVPTELLNELVAKIATANLETIKINVREMI 289
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 24/221 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + L+ V + H+L G +G+GK A A+ E+YGD
Sbjct: 13 WIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGDD 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ + A T V +I
Sbjct: 73 -WQE--------------HFLELNASDERG-----IDVVRDRIKSFARTSFGGVDYRIIF 112
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + I+ C II+ +++ C V + P+ E +
Sbjct: 113 LDEADALTSDAQSALRRTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRF-SPLGDEAV 171
Query: 526 EVLIQ-IARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E I+ IA +E +L+ + A ++RKAI L+A
Sbjct: 172 EAEIRHIADEEGIELTDDGVDALVYAAGGDMRKAINGLQAA 212
>gi|145343698|ref|XP_001416450.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
gi|144576675|gb|ABO94743.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
Length = 332
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 30/239 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + H+ ++ + G PH+L G G+GK + +AL E+YG
Sbjct: 15 WTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPHLLFHGPPGTGKTSTILALAKELYG-- 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL-----AITP-EVSN 461
+ VL AS A + + +RD + + P +
Sbjct: 73 ---LNFSNMVLELNASDARGINV------------------VRDEIQSFASTMRPFSTTF 111
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D + Q+ ++ IM+ YT + L C +I ++++ C + P +
Sbjct: 112 KLVIMDECDSMTKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIAS 171
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
++++ L I E+F +S A I + ++RK + L++ +L+ D I L
Sbjct: 172 GDMLQRLRHIVNSENFSISDNSLATIQKLGEGDMRKTVNILQSV-SLSASVVTDDAIHL 229
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 26/225 (11%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P SL+ + L+ + + PH+L G +G GK A A+ ++Y
Sbjct: 15 REIWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVY 74
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
G+ W + +ELN + Q + +RD + S
Sbjct: 75 GEDNWR--------------GNFLELNASDQRG--------IDVVRDRIKGFARSSFGGD 112
Query: 463 --MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ +IA E +++ + A ++R+AI +L+A
Sbjct: 173 DEAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAA 217
>gi|212546239|ref|XP_002153273.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
gi|210064793|gb|EEA18888.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
Length = 350
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQMLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDGQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI E D S A + A+ ++R+AI L++
Sbjct: 194 LSQICEAEKVDFSEDGIAALVFSAEGDMRQAINNLQS 230
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ V++ N A + +
Sbjct: 74 GD-----DWRGNFLELNASDERGIDV---------------VRDRIKNFARSSFGGHDYR 113
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
VI+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 VIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
I E + IA ED +++ + A ++R+AI +L+A
Sbjct: 174 AIAEQVRDIATAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 108/234 (46%), Gaps = 7/234 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P++L+ + H+ + + + PH+L G G+GK + +A+ +IYG
Sbjct: 80 WVEKYRPATLDDVVSHKDIVSTIDKFISLNRLPHLLFYGPPGTGKTSTILAVARKIYGGT 139
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
+ + SS + L +N + + +V++ N A T + ++ +I
Sbjct: 140 GNSIRGGVSGKGKEGSSMRNNVLELNASDDRG---IDVVRDQIKNFASTRMIFSSGYKLI 196
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C II +V++ C + P T E+
Sbjct: 197 ILDEADMMTTTAQNALRRVIEQYTKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEV 256
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ + E +L+ + +K ++R+A+ L+AC + YP D+ I
Sbjct: 257 DRRIQHVVDAESVNLTQDGREALLKLSKGDMRRALNVLQACHSA-YPVVDEGAI 309
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 15/267 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H ++LK+ + N PH+L G G+GK + +AL ++YG
Sbjct: 20 WVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGPR 79
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ Q +A + + +++L P +I++
Sbjct: 80 LFK----SRVLELNASDERGI--SIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ ++ Y+ + L C II+ + + C + +
Sbjct: 134 EADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNENALSR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA--DDQPIPLGWEE- 584
+ I KE+ ++ + + + +LRKAI L++ L++ A DD + +E
Sbjct: 194 IKYIVEKENLNVDEDVPETLLSISNGDLRKAITFLQSASRLSFALANPDDSEDRMHVDEE 253
Query: 585 ------VLIELAAEILADPSPKRLVMV 605
I+ A I+ D KRLV +
Sbjct: 254 HGKITKSAIQEIAGIIPDDILKRLVTI 280
>gi|119196513|ref|XP_001248860.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392861939|gb|EAS37458.2| replication factor C subunit 4 [Coccidioides immitis RS]
Length = 352
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDV 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGKHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI ED S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQS 230
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 17/223 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + LK+ V + N PH+L G G+GK A L H+++G
Sbjct: 12 LWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG- 70
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + +L AS +++ + VKE + + ++++
Sbjct: 71 ----ENYRQYMLELNASDERGIDV-----------IRSKVKEFART-RVAANIPFKIVLL 114
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ +M+ YT + + IL IIE +++ C V + P +++
Sbjct: 115 DEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVIS 174
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L IA +E ++ I ++ ++R+AI L+A AL
Sbjct: 175 RLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAALG 217
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 23/240 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + + + LK + DGNCPHI++ G G GK L H++ GDA
Sbjct: 23 WVEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSGLPGIGKTTSIHCLAHQLLGDA 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N VK P + ++++
Sbjct: 83 -----YKEGVLELNASDERGIDVVRN-----------KVKAFAQKKVTLPPGRHKIVILD 126
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ + ++ + L C IIE +++ C +++ E++
Sbjct: 127 EADSMTPGAQQALRRTMEIFANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDAEVLRR 186
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + + A+ ++R+AI L++ + AD DQP P+
Sbjct: 187 LLEICEMEGVKYNDDGLTALIFTAEGDMRQAINNLQSTFSGFGFVSADNVFKVCDQPHPV 246
>gi|408397489|gb|EKJ76631.1| hypothetical protein FPSE_03181 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ GD+
Sbjct: 35 WVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 95 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPVGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LMQIIEAEKVEFSDDGLAALVFSAEGDMRQAINNLQSTFA 238
>gi|70952462|ref|XP_745397.1| replication factor C subunit 5 [Plasmodium chabaudi chabaudi]
gi|56525708|emb|CAH78901.1| replication factor C subunit 5, putative [Plasmodium chabaudi
chabaudi]
Length = 348
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 29/287 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K+ P SL+ H+ LK+L + PHI+ G G GK L+ EI+ D
Sbjct: 2 WLEKYAPRSLDELNIHKDITARLKKLSAHNDLPHIIFYGAPGGGKSTRIDCLIKEIFKD- 60
Query: 408 CWNEKW----------PTQVLVPVASSAHHVELNV-NLQANAKYALMGLVKEIRDNLAIT 456
EK +++ + V S +H+EL L K + ++KE+ +
Sbjct: 61 ---EKIIRRPENITNAESKININVIQSNYHLELQCFELGTKDKIIVQSIIKELCSYKSSA 117
Query: 457 PEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
S + V + + +E Q ++ ++ Y + ++IL E IIE +K+ C
Sbjct: 118 SFFSKKPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCI 177
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMT--FAAKIATKAKQNLRKAIMALEACKALNY 570
I+V P EI VL I E+ S F + +NLRK IMALE N
Sbjct: 178 CIRVPLPTEEEIFTVLKNICDNENVSSSYNSKFFKTLINTHGRNLRKCIMALEMTVYSN- 236
Query: 571 PFADDQP---IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLA 614
D+P I + + EL + +P+ ++ KIQ L+
Sbjct: 237 ---SDKPHHSISVA-HTYINELCNFVFINPTQIKIKECVTKIQSLIT 279
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ V++ N A + +
Sbjct: 74 GD-----DWRGNFLELNASDERGIDV---------------VRDRIKNFARSSFGGHDYR 113
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
VI+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 VIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
I E + IA ED +++ + A ++R+AI +L+A
Sbjct: 174 AIAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|255931513|ref|XP_002557313.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581932|emb|CAP80071.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAEKVQHSEDGIAALVFSAEGDMRQAINNLQS 230
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 106/246 (43%), Gaps = 23/246 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + DGNCPHI+I G G GK L H++ G A
Sbjct: 21 WVEKYRPQVLDDVVGNADTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGPA 80
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 81 -----YKEGVLELNASDERGIDVVRN-----------KIKNFAQKKVTLPPGRHKIIILD 124
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++++ + L C IIE +++ C +++ EI++
Sbjct: 125 EADSMTAGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYGKLKDQEILKR 184
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + + + A+ ++R+AI L++ + D DQP P+
Sbjct: 185 LLEICEAEKVEYNDDGLTALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPI 244
Query: 581 GWEEVL 586
+ ++
Sbjct: 245 TIQTII 250
>gi|340054249|emb|CCC48545.1| putative replication factor C, subunit 2 [Trypanosoma vivax Y486]
Length = 347
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 106/221 (47%), Gaps = 7/221 (3%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEI 403
RP W +K++P SL+ Q L+ + G + PH L G G+GK +A+ E+
Sbjct: 19 RP-WVEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHGPPGTGKTTAILAVAQEL 77
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+G + ++V AS ++ + ++A A+ A+ G+ ++++ + + P
Sbjct: 78 FG----PDYIRSRVRELNASDDRGIQVIREKVKAFAQSAVGGVGQKVQSDGNVYPVPPFK 133
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ +M+ Y+D + + C II+ + + C + P V H
Sbjct: 134 LIILDEADALLPDAQAALRRMMEDYSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRH 193
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ E ++++A +E +S + + ++R AIM L+
Sbjct: 194 ALRERILEVATREGLRMSDASIDALDRTSGGDMRLAIMYLQ 234
>gi|452846354|gb|EME48287.1| hypothetical protein DOTSEDRAFT_147627 [Dothistroma septosporum
NZE10]
Length = 352
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ G A
Sbjct: 30 WVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGAA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRQKIVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L QIA+ E + S A + A+ ++R+AI L++ A
Sbjct: 194 LYQIAKAEGVEYSDDGIAALVFSAEGDMRQAINNLQSTHA 233
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 30/227 (13%)
Query: 345 RPFWADKHQPSSLNGFICHRHEA--QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
R W +K++P SL H EA + L+ + + PH+L G +G GK A A+ E
Sbjct: 15 REIWIEKYRPQSLGDI--HGQEAIVERLQSYIDQDDIPHLLFSGPAGVGKTTAATAIARE 72
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+YG+ W + +ELN + Q + +RD + S
Sbjct: 73 VYGEDNWR--------------GNFLELNASDQRG--------IDVVRDRIKGFARSSFG 110
Query: 463 ----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 111 GDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSP 170
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ +IA E +++ + A ++R+AI +L+A
Sbjct: 171 LSDAAVAGQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAA 217
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ V++ N A + +
Sbjct: 74 GD-----DWRGNFLELNASDERGIDV---------------VRDRIKNFARSSFGGHDYR 113
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
VI+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 VIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
I E + IA ED +++ + A ++R+AI +L+A
Sbjct: 174 AIAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|88602126|ref|YP_502304.1| replication factor C small subunit 2 [Methanospirillum hungatei
JF-1]
gi|88187588|gb|ABD40585.1| replication factor C subunit [Methanospirillum hungatei JF-1]
Length = 331
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 102/249 (40%), Gaps = 34/249 (13%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P + + + ++L+ N PH+++ G G+GK A L E+YGD
Sbjct: 2 FWIEKYRPVTFDQILGQERVCEVLRRCAATKNLPHLVVSGPPGTGKSAAVEVTLRELYGD 61
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL----------------MGLVKEIR 450
W V + S +L KYAL + K I
Sbjct: 62 T-----WQDNVTIFRTS---------DLMERGKYALESDERFLHLYRSDESFLSNFKHII 107
Query: 451 DNLA-ITPEVSNAMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
+ A I P + ++++E A H IQ+ ++ M+ Y+++C+ I C +I +K
Sbjct: 108 SSYASIRPINAEFKVMLFEDAHALSHDIQHALRRTMERYSNTCRFIFCTTQASTLIPPIK 167
Query: 509 THCKVIKVDPPVTHEIMEVL--IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+ C + P I + L IQ E +S I A +LRKAIM L+
Sbjct: 168 SRCLPLFFTPLSRDIIRDCLNTIQNDIPEPDRVSDDETGLIVAAAGGDLRKAIMYLQVRV 227
Query: 567 ALNYPFADD 575
PF D
Sbjct: 228 ETKIPFNPD 236
>gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1]
Length = 354
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ GD+
Sbjct: 35 WVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 95 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPVGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LMQIIEAEKVEFSDDGLAALVFSAEGDMRQAINNLQSTFA 238
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 16/225 (7%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL W +K++P L + + + L+++ DGN PH++I G G GK + HE
Sbjct: 6 KLELPWVEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHCIAHE 65
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ GD+ + VL AS +++ N +K+ P +
Sbjct: 66 LLGDS-----YSQAVLELNASDDRGIDVVRN-----------QIKQFAQKKCTLPPGKHK 109
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ M+ Y+ S + C IIE +++ C +++
Sbjct: 110 IIILDEADSMTSGAQQALRRTMEIYSSSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDE 169
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++++ L++I + ED + I A+ ++R+AI L++ A
Sbjct: 170 QVLKRLLEIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 36/242 (14%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ H ++L+ + N PH+L G G+GK + +AL
Sbjct: 37 RLQP-WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKS 95
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT------ 456
++G A + + +ELN + + +G+V+E A T
Sbjct: 96 LFGPALYRSRI--------------LELNASDERG-----IGIVREKVKGFARTQLSQPT 136
Query: 457 ----------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
P +I++ E D + Q ++ M+ Y+ + L C IIE
Sbjct: 137 GLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEP 196
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+ + C + P E L IAR E+ L K+ + ++ +LR+AI +++
Sbjct: 197 LASRCSKFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCSEGDLRRAITYMQSAA 256
Query: 567 AL 568
L
Sbjct: 257 RL 258
>gi|392597749|gb|EIW87071.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 334
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ L+ + + + LK + DGNCPHI+I G G GK L H++ GDA
Sbjct: 15 WVEKYRPTLLDDVVGNVETIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLGDA 74
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 75 -----YKEGVLELNASDERGIDVVRN-----------KIKSFAQKKVTLPPGRHKIVILD 118
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ E++
Sbjct: 119 EADSMTGGAQQALRRTMEIYSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEVLAR 178
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L++I ++E+ + + + ++R+AI L++
Sbjct: 179 LLEICKEENVQYNDDGLTALIFTCEGDMRQAINNLQS 215
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 6/221 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H +LK+ +V N PH+L G G+GK + +AL E+YG
Sbjct: 22 WVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP- 80
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + + Q +A + + ++L P +I++
Sbjct: 81 ---DLIKSRVLELNASDERGIA--IVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILD 135
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + C + P ++
Sbjct: 136 EADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLALRCSKFRFKPLANDNAVQR 195
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
L I ++E+ ++ + + T + +LR+AI L++ L
Sbjct: 196 LRYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARL 236
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ V++ N A + +
Sbjct: 74 GD-----DWRGNFLELNASDERGIDV---------------VRDRIKNFARSSFGGHDYR 113
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
VI+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 VIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ E + IA ED +++ + A ++R+AI +L+A
Sbjct: 174 AVAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|410670416|ref|YP_006922787.1| replication factor C [Methanolobus psychrophilus R15]
gi|409169544|gb|AFV23419.1| replication factor C [Methanolobus psychrophilus R15]
Length = 301
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429
LK + N PH+L G G GK A ++++ E++GD+ W E + E
Sbjct: 11 LKSYIKTRNLPHLLFSGPPGVGKTATSVSIARELFGDS-WRENF--------------TE 55
Query: 430 LNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MIVIYEVDKAAEHIQYLIKWIMDG 486
LN + + + +V+ N A T + A +I + E D Q ++ M+
Sbjct: 56 LNASDERG-----IDVVRTKIKNFAKTTPIGGADFKIIFLDEADALTSDAQSALRRTMER 110
Query: 487 YTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAK 546
YT++C+ IL C IIE +++ C V + P + + +A+ E D++
Sbjct: 111 YTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDEAVAGRVRFVAQNEGLDIAEDGVDA 170
Query: 547 IATKAKQNLRKAIMALEAC 565
I A+ ++RKAI +L+A
Sbjct: 171 IKYVAQGDMRKAINSLQAA 189
>gi|367037019|ref|XP_003648890.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
gi|346996151|gb|AEO62554.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
Length = 358
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 36 WVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGDS 95
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ + +K P + ++++
Sbjct: 96 -----YKEAVLELNASDERGIEV-----------VRQRIKGFAQKKVTLPAGRHKIVILD 139
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 140 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKR 199
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 200 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTHA 239
>gi|407926292|gb|EKG19259.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 352
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 29 WVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDA 88
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 89 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRQKIVILD 132
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 133 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQLVKR 192
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 193 LMQICGAEQVEYSEDGLAALVFSAEGDMRQAINNLQSTHA 232
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 23/246 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGNCPHI+I G G GK L H++ G+A
Sbjct: 23 WVEKYRPKVLDDVVGNIETIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGNA 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ N +K P + ++++
Sbjct: 83 -----YKEGVLELNASDERGIEVVRN-----------KIKTFAQKKVTLPPGRHKIVILD 126
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y ++ + L C IIE +++ C +++ E+++
Sbjct: 127 EADSMTAGAQQALRRTMEIYANTTRFCLACNMSNKIIEPIQSRCAILRYSKLRDTELLKR 186
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + + ++ ++R+AI L++ + D DQP P+
Sbjct: 187 LLEICELEKVKYNDDGLTALIFTSEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPI 246
Query: 581 GWEEVL 586
+ ++
Sbjct: 247 TVQTII 252
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 21/223 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + + LK V + N PH+L G G+GK A+AL+H++YG+
Sbjct: 5 LWAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL-AITP-EVSNAMI 464
++ + + L A+ + + + +++D +TP V +
Sbjct: 65 -------------------NYDQFFLELNASDENGINVIRTKVKDFARTVTPGNVPFKTV 105
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ YT+S + IL C II+ +++ + + P ++
Sbjct: 106 LLDEADNMTSDAQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDV 165
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L I ++E + + ++RKAI L+A A
Sbjct: 166 ILRLENILKEEKVQYDVKSLEVVYDVTGGDMRKAINVLQAAAA 208
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 17/223 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + + LK+ V + N PH+L G G+GK A AL H+++G
Sbjct: 9 LWAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFG- 67
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + +L AS +E + VKE + P + ++++
Sbjct: 68 ----ENYRQYMLELNASDERGIE-----------TIRTKVKEFARS-RTPPGIPFKIVLL 111
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ +M+ YT S + IL IIE +++ C + + P +++
Sbjct: 112 DEADNMTADAQQALRRLMEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVA 171
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L I +E I ++ ++R+AI L+A AL
Sbjct: 172 RLKWICEQEGCQYDEEALETIYEISEGDMRRAINILQAAAALG 214
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ V++ N A + +
Sbjct: 74 GD-----DWRGNFLELNASDERGIDV---------------VRDRIKNFARSSFGGHDYR 113
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
VI+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 VIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ E + IA ED +++ + A ++R+AI +L+A
Sbjct: 174 AVAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|429859273|gb|ELA34061.1| activator 1 37 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 361
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + +GN PH++I G G GK + L ++ GD+
Sbjct: 39 WVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 98
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + ++++
Sbjct: 99 -----YKEAVLELNASDERGIDVVRNR-----------IKGFAQKKVTLPQGRHKLVILD 142
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 143 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKR 202
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 203 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFA 242
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 115/263 (43%), Gaps = 37/263 (14%)
Query: 337 KAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALA 396
K V +L+P W +K++P ++ H +L++ + N PH+L G G+GK +
Sbjct: 15 KHTVDPQLQP-WVEKYRPKTIEDVTAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTI 73
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+AL ++YG + + T+VL ELN A+ + + + ++I+D T
Sbjct: 74 LALARQLYGP----DNFRTRVL----------ELN----ASDERGITIVREKIKDFARQT 115
Query: 457 PEVSNA-------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503
P + A +I++ E D + Q ++ IM+ Y + L C I
Sbjct: 116 PRANVASSDGQTYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFCLVCNYVTRI 175
Query: 504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
IE + + C + P L IA++E ++S + + +LR++I L+
Sbjct: 176 IEPLASRCSKFRFKPLDNSSTHGRLEYIAQQEGVNISQDTIKSLIACSGGDLRRSITYLQ 235
Query: 564 ACKALNYPFADDQPI-PLGWEEV 585
L A+ QPI P +E+
Sbjct: 236 TASRL----ANAQPISPRDIQEI 254
>gi|320040647|gb|EFW22580.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDV 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGKHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQIVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI ED S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAEDVKHSDDGIAALVFSAEGDMRQAINNLQS 230
>gi|310792410|gb|EFQ27937.1| replication factor C [Glomerella graminicola M1.001]
Length = 361
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + +GN PH++I G G GK + L ++ GD+
Sbjct: 39 WVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 98
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + ++++
Sbjct: 99 -----YKEAVLELNASDERGIDVVRNR-----------IKGFAQKKVTLPQGRHKLVILD 142
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 143 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKR 202
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 203 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFA 242
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 22/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + H LK V + + P+++ G +G GK A+AL EI G
Sbjct: 5 WVEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E W L AS A ++ V+ N V +I+
Sbjct: 63 ---EYWRQNFLELNASDARGIDT---------------VRTSIKNFCRLKPVGAPFRIIF 104
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P I+
Sbjct: 105 LDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHII 164
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L IA +E + + A+ +LRKAI L++ +L
Sbjct: 165 SRLEYIAEQEGLEYEPQALDTVVYFAEGDLRKAINILQSAASLG 208
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ V++ N A + +
Sbjct: 74 GD-----DWRGNFLELNASDERGIDV---------------VRDRIKNFARSSFGGHDYR 113
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
VI+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 VIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ E + IA ED +++ + A ++R+AI +L+A
Sbjct: 174 AVAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347837173|emb|CCD51745.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 355
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 95 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDQQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LLQIIETEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFA 238
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ V++ N A + +
Sbjct: 74 GD-----DWRGNFLELNASDERGIDV---------------VRDRIKNFARSSFGGHDYR 113
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
VI+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 VIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ E + IA ED +++ + A ++R+AI +L+A
Sbjct: 174 AVAEQVRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|261187582|ref|XP_002620210.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239594101|gb|EEQ76682.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239608919|gb|EEQ85906.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis ER-3]
gi|327354067|gb|EGE82924.1| replication factor C subunit 4 [Ajellomyces dermatitidis ATCC
18188]
Length = 354
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVLKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI E+ S A + A+ ++R+AI L++
Sbjct: 194 LTQICEAENVKHSEDGLAALIFSAEGDMRQAINNLQS 230
>gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|149388978|gb|EAZ62975.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL W +K++P L+ + + + LK + DGN PH++I G G GK L +E
Sbjct: 8 KLELPWVEKYRPRRLDDVVGNEETIERLKLIAKDGNMPHMIISGLPGIGKTTSIHCLAYE 67
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ GD + + L AS +++ N +K+ P +
Sbjct: 68 LLGDDYYQQA----TLELNASDDRGIDVVRN-----------RIKQFAQTKIKLPPGRHK 112
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ M+ Y+++ + C IIE +++ C +++ +
Sbjct: 113 IIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADD 172
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD-------- 574
+++ L++++ E+ + + A+ ++R+AI L++ A + F +
Sbjct: 173 QVLTRLLEVSAAENVKFNSEGLQALIFTAEGDMRQAINNLQSTVA-GFGFVNDINVFKIV 231
Query: 575 DQPIPLGWEEVLI 587
DQP PL + +LI
Sbjct: 232 DQPHPLVIQRILI 244
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 109/259 (42%), Gaps = 36/259 (13%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+ V G+ PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL IIE +++ + + P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWE 583
+ L IA E +S I + ++R+AI AL+ +++ +
Sbjct: 165 VFTRLRYIAENEGVKISDDALETIYEFTQGDMRRAINALQIAASVD-------------K 211
Query: 584 EVLIELAAEILADPSPKRL 602
EV E+ A L SP+ L
Sbjct: 212 EVTEEVVARALGMVSPRLL 230
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
E++ WA+K++P +L+ + + LK+ V + N PH+L G G+GK +A L H
Sbjct: 3 EEVELLWAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAH 62
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
++YGD + +L AS +E+ + G VKE + +V
Sbjct: 63 DLYGD-----DYRKYMLELNASDERKIEV-----------IRGKVKEFART-RVVGDVPF 105
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D Q ++ +M+ Y+ + + IL IIE +++ + + P
Sbjct: 106 KIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSR 165
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+++ L I E + + I ++ ++R+AI L+ AL
Sbjct: 166 EDVVGRLKYICNAEKIECAEKALETIYELSEGDMRRAINILQTAAALG 213
>gi|452986023|gb|EME85779.1| hypothetical protein MYCFIDRAFT_41166 [Pseudocercospora fijiensis
CIRAD86]
Length = 353
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 31 WVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDA 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 91 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRQKIVILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 135 EADSMTSGAQQALRRTMEIYSGTTRFAFACNLSNKIIEPLQSRCAILRYSRLTDAQVVKR 194
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L QI E + S A + A+ ++R+AI L++ A
Sbjct: 195 LYQICEAEKVEYSDDGIAALVFSAEGDMRQAINNLQSTHA 234
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 23/246 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + +GN PH++I G G GK + L H + G A
Sbjct: 23 WVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPA 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K I P + +I++
Sbjct: 83 -----YKEGVLELNASDERGIDVVRNR-----------IKAFAQKKVILPPGRHKIIILD 126
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ ++++
Sbjct: 127 EADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQR 186
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-------LNYPFADDQPIPL 580
L+ I + E + + A + A+ ++R+A+ L++ A N DQP P+
Sbjct: 187 LLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPV 246
Query: 581 GWEEVL 586
+L
Sbjct: 247 AIHAML 252
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 22/246 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ + L+ + DGN PH+++ G G GK +AL H + G
Sbjct: 11 WVEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLALAHTLLGPD 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ E VL AS +++ N +K P + ++++
Sbjct: 71 VFKEA----VLELNASDERGIDVVRN-----------RIKSFAQKKIALPPGRHKIVILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ E+++
Sbjct: 116 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPIQSRCAILRFSKLRDIELLQR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK---ALNYPFAD----DQPIPL 580
L QIA KE+ D++ + ++ ++R+A+ L++ L P A DQP PL
Sbjct: 176 LRQIAEKENADVTDEGYEALIFTSEGDMRQAVNNLQSTHTGLGLVTPDAVFKVCDQPHPL 235
Query: 581 GWEEVL 586
+ +L
Sbjct: 236 LVQNLL 241
>gi|336266754|ref|XP_003348144.1| hypothetical protein SMAC_03989 [Sordaria macrospora k-hell]
gi|380091080|emb|CCC11286.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 357
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ GDA
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDA 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ + +K P + ++++
Sbjct: 95 -----YKEAVLELNASDERGIEV-----------VRQRIKGFAQKKVTLPPGRHKIVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTHA 238
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + L+ + + PH+L G +G GK A A+ IY
Sbjct: 16 REIWIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 75
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W + +ELN + Q + +V++ N A + +
Sbjct: 76 GD-----DW----------RGNFLELNASDQRG-----IDVVRDRIKNFARSSFGGHDYR 115
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 116 IIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 175
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
I + IA E +L+ + A ++R+AI +L+A
Sbjct: 176 AIADQTRDIAAAEGIELTEDGLDALVYAAGGDMRRAINSLQAA 218
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H +LK + N PH+L G G+GK + +AL E++G +
Sbjct: 24 WVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGPS 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
++VL AS + + N +A + + +++L P +I++
Sbjct: 84 LMK----SRVLELNASDERGISIVREKVKN--FARLTVTNPTKEDLEQYPCPPYKIIILD 137
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + P +
Sbjct: 138 EADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGR 197
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYPFAD 574
L QIA++E K+ A+ +LRKAI L+ A K +Y A+
Sbjct: 198 LEQIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAE 245
>gi|68073025|ref|XP_678427.1| replication factor C subunit 5 [Plasmodium berghei strain ANKA]
gi|56498890|emb|CAH97974.1| replication factor C subunit 5, putative [Plasmodium berghei]
Length = 349
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 22/284 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K+ P +L+ H+ LK+L V + PHI+ G G GK L+ EI+ D
Sbjct: 2 WLEKYAPRNLDELNIHKDITARLKKLSVHNDLPHIIFYGAPGGGKSTRIDCLIKEIFKDE 61
Query: 408 CWNEK------WPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEVS 460
+ +++ + V S +H+EL L K + ++KE+ + S
Sbjct: 62 KIIRRPENITNTESKININVIQSNYHLELQCFELGTKDKIIVQNIIKELCSYKSSASFFS 121
Query: 461 N----AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ V + + +E Q ++ ++ Y + ++IL E IIE +K+ C I+V
Sbjct: 122 KRPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRV 181
Query: 517 DPPVTHEIMEVLIQIARKEDFDL---SMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
P EI VL I E+ S F + +NLRK IMALE N
Sbjct: 182 PLPTEEEIFTVLKNICDNENVSSNYNSTNFFKTLINIHGRNLRKCIMALEMTVYSN---- 237
Query: 574 DDQP---IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLA 614
D+P I + + EL + +P+ ++ KIQ L+
Sbjct: 238 SDKPHHSISVA-HTYINELCNFVFINPTQIKIKECVTKIQSLIT 280
>gi|253742391|gb|EES99226.1| Replication factor C, subunit 4 [Giardia intestinalis ATCC 50581]
Length = 322
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 17/221 (7%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
K PF ++++P +L+G I + + L+ GN P+IL+ G G GK +A+ L ++
Sbjct: 2 KALPFI-ERYRPRTLDGLIGNPEILRRLRYFAAQGNLPNILLTGGPGLGKTTIALCLANQ 60
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ G S +ELN + + N + VK P
Sbjct: 61 MLGSN---------------RSEAFLELNASDERNVS-DIRAKVKTFAQKQVTLPAGIQK 104
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++ + E D E Q +++ IMD T S + L C + +IE V++ C V+++ P
Sbjct: 105 LVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPATQA 164
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
E+++ L I KE ++ T + ++R + +L+
Sbjct: 165 ELIKYLQDICEKEGVKSDTEALKELITISGNDIRSCLNSLQ 205
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 16/225 (7%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL W +K++P L + + + L+++ DGN PH++I G G GK L HE
Sbjct: 7 KLELPWVEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIHCLAHE 66
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ GDA + VL AS +++ N +K+ P +
Sbjct: 67 LLGDA-----YSQAVLELNASDDRGIDVVRN-----------QIKQFAQKKCTLPPGKHK 110
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ M+ Y+++ + C IIE +++ C +++
Sbjct: 111 IIILDEADSMTSGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDE 170
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++++ L +I + E+ + + A+ ++R+AI L++ A
Sbjct: 171 QVLKRLFEIIKAENVQYTNDGLEALIFTAEGDMRQAINNLQSTVA 215
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 23/240 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + DGNCPHI+I G G GK L H++ GDA
Sbjct: 25 WVEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDA 84
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 85 -----YKEGVLELNASDERGIDVVRN-----------KIKAFAQKKVTLPPGRHKIVILD 128
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y ++ + L C IIE +++ C +++ EI++
Sbjct: 129 EADSMTPGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDTEILKR 188
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + + ++ ++R+AI L++ + D DQP P+
Sbjct: 189 LLEICEMEKVQYNDDGLTALIFTSEGDMRQAINNLQSTHSGFGFISGDNVFKVCDQPHPI 248
>gi|116206666|ref|XP_001229142.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183223|gb|EAQ90691.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 356
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 109/246 (44%), Gaps = 23/246 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 34 WVEKYRPVFLDDIVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLSRQLLGDS 93
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ + +K P+ + ++++
Sbjct: 94 -----YKEAVLELNASDERGIEV-----------VRQRIKGFAQKKVTLPQGRHKIVILD 137
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 138 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKR 197
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-LNYPFAD------DQPIPL 580
L+QI E + + A + A+ ++R+AI L++ A + AD D P P+
Sbjct: 198 LLQIIEAEKVEYNDEGLAALVFSAEGDMRQAINNLQSTFAGFGFVSADNVFKVVDSPHPI 257
Query: 581 GWEEVL 586
+ +L
Sbjct: 258 KVQAML 263
>gi|389627572|ref|XP_003711439.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|351643771|gb|EHA51632.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|440468926|gb|ELQ38053.1| replication factor C subunit 4 [Magnaporthe oryzae Y34]
gi|440480570|gb|ELQ61229.1| replication factor C subunit 4 [Magnaporthe oryzae P131]
Length = 358
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 36 WVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 95
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 96 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 139
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 140 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKR 199
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E + S A + A+ ++R+AI L++
Sbjct: 200 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQS 236
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + + + LK + DGNCPHI+I G G GK L H++ GDA
Sbjct: 24 WVEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLGDA 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 84 -----YKEGVLELNASDERGIDVVRN-----------KIKAFAQKKVTLPPARHKIVILD 127
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++++ + L C IIE +++ C +++ EI++
Sbjct: 128 EADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEILKR 187
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L++I E + + + + ++R+AI L++
Sbjct: 188 LLEICEMEKVEYNDDGLTALIFTCEGDMRQAINNLQS 224
>gi|299471716|emb|CBN76937.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 332
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ L+ + + LK + +GN P+++I G G+GK AL H + GDA
Sbjct: 12 WVEKYRPNKLDDVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDA 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS + +E+ N +K P + +I++
Sbjct: 72 -----YANAVLELNASDSRGIEVVRN-----------TIKMFTQKKVTLPPGQHKVIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + L C IIE +++ C +++ EI+
Sbjct: 116 EADSMTASAQQALRRTMEIYSHTTRFALACNVSTKIIEPIQSRCAILRFSRLSEEEILLR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L Q+ E S I A+ ++R A+ L+A
Sbjct: 176 LQQVCEAEQVSYSPDGLEAIIFTAEGDMRNALNNLQA 212
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
E++ WA+K++P +L+ + + LK+ V + N PH+L G G+GK +A L H
Sbjct: 3 EEVELLWAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAH 62
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
++YGD + +L AS +E+ + G VKE + +V
Sbjct: 63 DLYGD-----DYRKYMLELNASDERKIEV-----------IRGKVKEF-ARARVVGDVPF 105
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D Q ++ +M+ Y+ + + IL IIE +++ + + P
Sbjct: 106 KIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSR 165
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+++ L I E + + I ++ ++R+AI L+ AL
Sbjct: 166 EDVVGRLKYICNAEKIECAEKALETIYELSEGDMRRAINILQTAAALG 213
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 18/223 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L I L+ V + P++L G +G GK A A+ E+YG
Sbjct: 17 IWVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYG- 75
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS +++ + G +KE A S +I +
Sbjct: 76 ----EDWRDNFLELNASDDRGIDV-----------VRGRIKEF--ARASFGGYSYRIIFL 118
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ ++ + + IL C II+ +++ C V + P + E
Sbjct: 119 DEADSLTSDAQSALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGE 178
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +IA E +++ + A ++R+A+ +L+A +
Sbjct: 179 RIREIAHIEGIEITDGGVEALVYAADGDMRRAVNSLQAAAVMG 221
>gi|451927542|gb|AGF85420.1| replication factor C small subunit [Moumouvirus goulette]
Length = 400
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 113/264 (42%), Gaps = 18/264 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-G 405
F +K++P + F+ ++ + L L + + PHI+I G G+GK+ L L IY
Sbjct: 2 FLFEKYRPKNSREFLFNKDTLEQLNYLASNEDIPHIIISGPPGAGKKTLVKFFLEAIYDS 61
Query: 406 DACWNEKW-------PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE--IRDNLAIT 456
D K T+ + + S +H+ + + KY L ++K+ + + I
Sbjct: 62 DVNILSKMKYNINGSSTKKEIEIFQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFNIF 121
Query: 457 PEVSN-AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
IVIY ++ A + Q ++ M+ Y +C+ I+ + I + +++ C+
Sbjct: 122 KTTRKFKTIVIYNIENLANNSQAALRRTMELYAKTCRFIMVSNNLSKIFDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
V P +I V+ I+ E+ L I N+++AI L++ + + PF
Sbjct: 182 VSLPSIDDIRNVVTHISVMENIRLENDDMNFILDNCDNNIKRAIWILDSKRLHSDPF--- 238
Query: 576 QPIPLGWEEVLIELAAEILADPSP 599
+ +EV + IL P
Sbjct: 239 ----ISLDEVFNSVVESILKSLDP 258
>gi|242823966|ref|XP_002488166.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713087|gb|EED12512.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 815
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ G+A
Sbjct: 30 WVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQMLGNA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDGQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L QI E + S A + A+ ++R+AI L++ A
Sbjct: 194 LSQICEAEKVEFSEDGIAALVFSAEGDMRQAINNLQSTWA 233
>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 347
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 110/228 (48%), Gaps = 7/228 (3%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHE 402
LRP W +K++P SL+ Q L+ + G + PH L G G+GK +A+ HE
Sbjct: 18 LRP-WIEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHGPPGTGKTTAILAVAHE 76
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
++G + ++V AS ++ + +++ A+ A+ +V++++ + I P
Sbjct: 77 LFG----PDYIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQSDGKIYPVPPF 132
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+I++ E D Q ++ +M+ ++D + + C II+ + + C + P +
Sbjct: 133 KVIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIK 192
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E + ++A +E+ +S + + + +LR AIM L+ + N
Sbjct: 193 EALYERISEVASRENIQISRSSIDALDHVSGGDLRLAIMYLQYAQRAN 240
>gi|380470252|emb|CCF47823.1| replication factor C subunit 4 [Colletotrichum higginsianum]
Length = 361
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + +GN PH++I G G GK + L ++ GD+
Sbjct: 39 WVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 98
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + ++++
Sbjct: 99 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRHKLVILD 142
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 143 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKR 202
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 203 LMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFA 242
>gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796]
Length = 264
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G G GK L HE+ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 69 ---RSYADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPPGKHKIVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|340522843|gb|EGR53076.1| replication factor C subunit 4 [Trichoderma reesei QM6a]
Length = 357
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + ++++
Sbjct: 93 ---ESYKEAVLELNASDERGIDVVRNR-----------IKGFAQKKVTLPPGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E + S A + A+ ++R+AI L++
Sbjct: 199 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQS 235
>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
gi|73920753|sp|Q977Z9.2|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ Q LK V PH+L G G+GK + A+AL E++G+
Sbjct: 4 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGE 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE--VSNAMI 464
+ W E + +E+N A+ + + + +I+D I P + ++
Sbjct: 64 S-WKENF--------------IEMN----ASNENGIDVIRNKIKDIARIRPSNPLGFKIL 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D+ Q ++ M+ Y+++ + + C II +++ V++ P I
Sbjct: 105 FLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFI 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ L +IA+ E F + + + ++RKAI L+A
Sbjct: 165 KKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAV 205
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 17/223 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + + LK+ V + + PH+L G G+GK +A L H++YGD
Sbjct: 29 LWAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMAHCLAHDLYGD 88
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ +L AS +E+ + G VKE + + EV ++++
Sbjct: 89 -----DYKKYMLELNASDERKIEV-----------IRGKVKEFARS-RVVGEVPFKIVLL 131
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ +M+ Y+ + + IL IIE +++ + + P +++E
Sbjct: 132 DEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKEDVVE 191
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L I E I ++ ++R+AI L+ AL
Sbjct: 192 RLRYICNAEKVKCDERALETIYELSEGDMRRAINILQTTAALG 234
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H +LK + N PH+L G G+GK + +AL E++G +
Sbjct: 24 WVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGPS 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
++VL AS + + N +A + + +++L P +I++
Sbjct: 84 LMK----SRVLELNASDERGISIVREKVKN--FARLTVTNPTKEDLEQYPCPPYKIIILD 137
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + P +
Sbjct: 138 EADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGR 197
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYPFAD 574
L QIA++E K+ A+ +LRKAI L+ A K +Y A+
Sbjct: 198 LEQIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAE 245
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 13/233 (5%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALA 396
A +I+ +P W +K++P + + H+ E ++L + G+CPH+L G G+GK A
Sbjct: 2 APIIQSTQP-WVEKYRPKQVKD-VAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTA 59
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+A+ H+++G E + ++VL AS + NV +A + + N
Sbjct: 60 LAIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGTNKPKNGYPC 113
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P +IV+ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 114 PPYK--IIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
P+T EIM ++ I ++E L + ++ ++ +LR+AI L++ L
Sbjct: 172 K-PLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARL 223
>gi|406701715|gb|EKD04829.1| DNA clamp loader [Trichosporon asahii var. asahii CBS 8904]
Length = 201
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 484 MDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF 543
M+ Y + +LI+C II +++ C +++V P E+ A+KE F L +
Sbjct: 14 MEKYMTNMRLIMCANSTSKIIAPIRSRCLLVRVAAPTDDEV-------AKKERFTLPPSA 66
Query: 544 AAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL-GWEEVLIELAAEILADPSPKRL 602
+ I A NLRKA++ +EA + N D + WE ++A I+ + SP+RL
Sbjct: 67 SDAIIEAADGNLRKALLVMEAMRMQNPDLNGDVDVAKPDWELYCAKIAESIMQEQSPQRL 126
Query: 603 VMVRGKIQKLLAEFVHPKLIL 623
+ +RGKI +LL+ + P ++L
Sbjct: 127 LDIRGKIYELLSHCIPPAVVL 147
>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
Length = 343
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 23/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ LK + DGNCPH+LI G G GK + L + G+A
Sbjct: 24 WVEKYRPLRLDDVVGNKDTIDRLKVIQKDGNCPHLLISGLPGIGKTTSVLCLARALLGEA 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS V++ N +K P + +I++
Sbjct: 84 -----YKEGVLELNASDERGVDVVRN-----------KIKTFAQKKVSLPPGRHKIIILD 127
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ I++
Sbjct: 128 EADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKVRDEHILKR 187
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E+ + S A I + ++R+AI L++ L + D DQP P
Sbjct: 188 LLEICEMENVEYSDEGLAAIIFTTEGDMRQAINNLQSTWTGLGFVSPDNVFKVCDQPHPF 247
Query: 581 GWEEVLI 587
+L+
Sbjct: 248 LIRSILL 254
>gi|396478172|ref|XP_003840471.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
gi|312217043|emb|CBX96992.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
Length = 350
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 31 WVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDA 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 91 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRQKLVILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +++
Sbjct: 135 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRR 194
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++QI ED S A + A+ ++R+AI L++ A
Sbjct: 195 VMQICEAEDVQYSDDGIAALVFSAEGDMRQAINNLQSTHA 234
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 36/242 (14%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ H ++L+ + N PH+L G G+GK + +AL
Sbjct: 35 RLQP-WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKS 93
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT------ 456
++G A + + +ELN + + +G+V+E A T
Sbjct: 94 LFGPALYRSRI--------------LELNASDERG-----IGIVREKVKGFARTQLSQPT 134
Query: 457 ----------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
P +I++ E D + Q ++ M+ Y+ + L C +IE
Sbjct: 135 GLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRVIEP 194
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+ + C + P E L IAR E+ L K+ + + +LR+AI +++
Sbjct: 195 LASRCSKFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCGEGDLRRAITYMQSAA 254
Query: 567 AL 568
L
Sbjct: 255 RL 256
>gi|358389695|gb|EHK27287.1| hypothetical protein TRIVIDRAFT_82171 [Trichoderma virens Gv29-8]
Length = 357
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + ++++
Sbjct: 93 ---ESYKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E + S A + A+ ++R+AI L++
Sbjct: 199 LMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQS 235
>gi|221059105|ref|XP_002260198.1| replication factor c subunit [Plasmodium knowlesi strain H]
gi|221061841|ref|XP_002262490.1| replication factor c subunit 4 [Plasmodium knowlesi strain H]
gi|193810271|emb|CAQ41465.1| replication factor c subunit, putative [Plasmodium knowlesi strain
H]
gi|193811640|emb|CAQ42368.1| replication factor c subunit 4, putative [Plasmodium knowlesi
strain H]
Length = 339
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 122/274 (44%), Gaps = 31/274 (11%)
Query: 329 FDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQS 388
+E SF K ++++ W +K++P +L+ + + LK ++V GN P++L+ G
Sbjct: 1 MEEDSF--KNRLLKRNIDIWIEKYRPENLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAP 58
Query: 389 GSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448
G+GK + L E+ G P A A +ELN + + +K
Sbjct: 59 GTGKTTSILCLASEMLG--------------PQAKKAV-LELNAS-DDRGINVIRDRIKS 102
Query: 449 IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
+ P + +I++ EVD Q ++ IM+ Y+D+ + L C II++++
Sbjct: 103 FAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQ 162
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C +I+ ++++ +++I + E+ + + A +LRKA+ L++ A
Sbjct: 163 SRCAIIRYFKLSDDQVLKRIVKICQMENIKYTDDGLETLTFIADGDLRKAVNCLQSTYA- 221
Query: 569 NYPFADDQPIPLGWEEVLIELAAEILADPSPKRL 602
G E + E I PSP+R+
Sbjct: 222 ------------GLEVINKENVLHICDIPSPERI 243
>gi|295669055|ref|XP_002795076.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285769|gb|EEH41335.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 352
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 30 WVEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDS 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQILKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI + E+ S A + A+ ++R+AI L++
Sbjct: 194 LTQICKTENVKHSEDGIAALIFSAEGDMRQAINNLQS 230
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 136/296 (45%), Gaps = 29/296 (9%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALA 396
A V++ +P W +K++P + + H+ E ++L + +CPH+L G G+GK A
Sbjct: 2 APVLQSSQP-WVEKYRPKQVKD-VAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTA 59
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+A+ H+++G E + ++VL AS + NV +A + + R +
Sbjct: 60 LAIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGSNHRQSGYPC 113
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P S +I++ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 114 P--SFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIM-EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE------------ 563
P++ E+M ++ I +E L + +++ ++ +LR+AI L+
Sbjct: 172 -KPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQVVPLEVVNKLFT 230
Query: 564 ACKALNYPFAD---DQPIPLGW-EEVLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
ACK+ ++ A+ D + G+ +I +I+A+ M + KI K LAE
Sbjct: 231 ACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAE 286
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 19/236 (8%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ L+ + + PH+L G +G GK A A+ E+Y
Sbjct: 11 REIWIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVY 70
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ + N A G + R +I
Sbjct: 71 GD-----DWRGNFLELNASDERGIDVVRDRIKNFARASFG-GHDYR------------II 112
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P +
Sbjct: 113 FLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAV 172
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
+ +IA +E +++ + A ++R+AI +L+A A D++ + L
Sbjct: 173 AGQIRKIADREGIEMTDEGLDALVYAADGDMRRAINSLQAA-ATTGGVVDEEAVYL 227
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 16/225 (7%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL W +K++P L + + + LK +DGN PH++I G G GK L HE
Sbjct: 6 KLELPWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVHCLAHE 65
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ GD ++ VL AS +E+ N +K+ P +
Sbjct: 66 LLGDMYYD-----AVLELNASDDRGIEVVRN-----------KIKQFAHKKVSLPPGRHK 109
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D Q ++ M+ Y+ + + + C IIE +++ C +++
Sbjct: 110 IVILDEADSMTPGAQQALRRTMEIYSGTTRFVFACNMSNKIIEPLQSRCSILRYSKLYDE 169
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+++ L+ I ++E + + A+ ++R+AI L++ A
Sbjct: 170 QVLSRLLYICKEEGVKYTDDGLEALIFTAEGDMRQAINNLQSTVA 214
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 20/219 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L H + L V + H+L G +G GK A A+ E+YG
Sbjct: 15 WIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYG-- 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS +++ + +++ A+ + G I I +
Sbjct: 73 ---EDWEENFLELNASDERGIDVVRDRVKSFARTSFGGYDYRI--------------IFL 115
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 116 DEADALTADAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEA 175
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ QIA++E D++ + A ++RKAI L+A
Sbjct: 176 QIRQIAQEEVIDVTEDGIEALVYVAGGDMRKAINGLQAA 214
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L + + L V GN PH+L G +G GK A+AL E + D
Sbjct: 7 IWIEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFFKD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
+ W+ + ELN + + + +V+ A T + A +
Sbjct: 67 S-WHMNFR--------------ELNASDERG-----IDVVRNQIKQFARTSPLGGAGFKI 106
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+ + E D Q ++ M+ Y +C+ IL C II+ +++ C + +
Sbjct: 107 LFLDEADALTPDAQAALRRTMESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEA 166
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I + +++IA E ++ I A+ ++RKAI AL+ L+
Sbjct: 167 ITKEILRIAENEKLTITGEAIDAIIEIAQGDMRKAINALQGAAILS 212
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 30/228 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + L+ V + PH++ G +G+GK A A+ E+YGD
Sbjct: 21 WIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYGDD 80
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 81 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARASFGGYDHR 117
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V + +T
Sbjct: 118 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRF-TELTE 176
Query: 523 EIMEVLI-QIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +E + +IA E +++ + A ++RKAI AL+A +
Sbjct: 177 DAIEAQVREIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAVMG 224
>gi|448123321|ref|XP_004204663.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|448125599|ref|XP_004205221.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358249854|emb|CCE72920.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358350202|emb|CCE73481.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
Length = 327
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 110/247 (44%), Gaps = 24/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +DGN PH+++ G G GK L +E+ G
Sbjct: 13 WVEKYRPKKLDDIVGNEETVERLKLIALDGNMPHMILSGLPGIGKTTSIHCLAYELLGPE 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+++ +ELN + + +K+ P + +I++
Sbjct: 73 LYHQA--------------TMELNAS-DDRGIDVVRNKIKQFAQTKIQLPAGRHKIIILD 117
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ + ++++
Sbjct: 118 EADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEQVLQR 177
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++I + ED + + A+ ++R+AI L++ A + F + DQP P
Sbjct: 178 LLEITKLEDVKYNSEGLQALIFTAEGDMRQAINNLQSTVA-GFGFVNDVNVFKIVDQPHP 236
Query: 580 LGWEEVL 586
L ++L
Sbjct: 237 LIIRKIL 243
>gi|410730707|ref|XP_003980174.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
gi|401780351|emb|CCK73498.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
Length = 321
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + L+++ DGN PH++I G G GK L HE+ GDA
Sbjct: 12 WVEKYRPHVLKDIVGNEETILRLEQIAQDGNMPHMIISGLPGIGKTTSIHCLAHELLGDA 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 72 -----YSRAVLELNASDDRGIDVVRN-----------QIKHFAQKKCYLPPGKHKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ +++S + C IIE +++ C +++ ++++
Sbjct: 116 EADSMTAGAQQALRRTMELFSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L++I + ED + I A+ ++R+AI L++ A
Sbjct: 176 LLEIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 215
>gi|358401379|gb|EHK50685.1| hypothetical protein TRIATDRAFT_157714 [Trichoderma atroviride IMI
206040]
Length = 357
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + ++++
Sbjct: 93 ---ESYKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E + S A + A+ ++R+AI L++
Sbjct: 199 LMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQS 235
>gi|193605856|ref|XP_001945771.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328696454|ref|XP_003240029.1| PREDICTED: replication factor C subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 363
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 115/265 (43%), Gaps = 29/265 (10%)
Query: 336 QKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL 395
Q V L W +K++P S + + L++ GN P+I+I G G GK
Sbjct: 36 QTKTVKSDLNTPWIEKYRPKSFTDIVGNEETVLRLEKFSSCGNVPNIIIAGPPGVGKTTT 95
Query: 396 AMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDN 452
+AL + G A + VL ASS ++ + + A K L
Sbjct: 96 ILALARILLGGA-----FKEAVLELNASSDRGIDTVRNKIKMFAQQKVTL---------- 140
Query: 453 LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
P + +I++ E D + Q ++ M+ ++++ + L C + IIE++++ C
Sbjct: 141 ----PPGRHKIIILDEADSMTDGAQQALRRTMELWSNTTRFALACNNSDKIIEAIQSRCA 196
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA-------C 565
+++ E+M ++++ + E+ S + A+ ++R+A+ L++
Sbjct: 197 MLRYGKLSDQEVMTQMLKVCKSEEVSFSADGLEAVVFTAQGDMRQALNNLQSTWNGFRHV 256
Query: 566 KALNYPFADDQPIPLGWEEVLIELA 590
+ N D+P PL +E+L+E A
Sbjct: 257 DSTNVFKVCDEPHPLLVKEMLLECA 281
>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 330
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ Q LK V PH+L G G+GK + A+AL E++G+
Sbjct: 16 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGE 75
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE--VSNAMI 464
+ W E + +E+N A+ + + + +I+D I P + ++
Sbjct: 76 S-WKENF--------------IEMN----ASNENGIDVIRNKIKDIARIRPSNPLGFKIL 116
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D+ Q ++ M+ Y+++ + + C II +++ V++ P I
Sbjct: 117 FLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFI 176
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ L +IA+ E F + + + ++RKAI L+A
Sbjct: 177 KKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAV 217
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ HR + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 42 WVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 101
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
N + + L A+ + + ++I+D +L+ + S
Sbjct: 102 YQN-------------------MILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVK 142
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D + Q+ ++ +++ YT S + L C II ++++ C + P
Sbjct: 143 LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAV 202
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD------- 575
+ E L + + E D+ + A + + ++RKA+ L++ + ++
Sbjct: 203 HVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEETVYLCTG 262
Query: 576 QPIPLGWEEVLIELAAEILADPSPKRL 602
P+P E++ L E AD S KR+
Sbjct: 263 NPLPKDIEQISYWLLNEQFAD-SFKRI 288
>gi|401400278|ref|XP_003880754.1| putative replication factor c subunit [Neospora caninum Liverpool]
gi|325115165|emb|CBZ50721.1| putative replication factor c subunit [Neospora caninum Liverpool]
Length = 347
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 103/221 (46%), Gaps = 16/221 (7%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
L W +K++P +L+ + + + L+ + +GN PH+++ G G+GK + + L ++
Sbjct: 26 LDSIWIEKYRPETLDDVVGNDQVMRRLRIIAKEGNMPHLMLAGPPGTGKTSSVLCLCKQL 85
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
G +W L AS +++ ++ K+ KE RD P + +
Sbjct: 86 LG-----SRWRACTLELNASDERTIDV---IREKVKH----FAKEKRD----LPPGRHKI 129
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ EVD E Q ++ IM+ ++D+ + L C +IE +++ C +++ +
Sbjct: 130 VILDEVDAMTEAAQQALRRIMEQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDAQ 189
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++ L Q+ E ++ I A ++R A+ L++
Sbjct: 190 LVRRLRQVCSMEAVQVTDDGMEAIVFCADGDMRSALNNLQS 230
>gi|68076857|ref|XP_680348.1| replication factor c subunit 4 [Plasmodium berghei strain ANKA]
gi|56501262|emb|CAH99168.1| replication factor c subunit 4, putative [Plasmodium berghei]
Length = 335
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 121/280 (43%), Gaps = 44/280 (15%)
Query: 329 FDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQS 388
+E SF K ++++ W +K++P L + + LK ++V GN P++L+ G
Sbjct: 1 MEEDSF--KNRLLKRNIDIWIEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAGAP 58
Query: 389 GSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448
G+GK + L E+ G S A L +N + +
Sbjct: 59 GTGKTTSILCLASEMLG-----------------SQAKKAVLELNASDDRG------INV 95
Query: 449 IRDNL-AITPEVS-----NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD 502
IRD + + E+S + +I++ EVD Q ++ IM+ Y+D+ + L C
Sbjct: 96 IRDRIKSFAKEISLPPGRHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEK 155
Query: 503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562
II+++++ C +I+ ++++ +++I E+ + I A +LRKA+ L
Sbjct: 156 IIDALQSRCAIIRYFKLTDDQVLKRILKICEYENIKYTDDGLETITFIADGDLRKAVNCL 215
Query: 563 EACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRL 602
++ A G E V E I PSP+R+
Sbjct: 216 QSTYA-------------GLEVVNKENVLNICDIPSPERI 242
>gi|401623752|gb|EJS41840.1| rfc4p [Saccharomyces arboricola H-6]
Length = 323
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G G GK L HE+ G +
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGSS 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + +I++
Sbjct: 71 -----YADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPQGKHKIIILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L++I + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLEIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|451846118|gb|EMD59429.1| hypothetical protein COCSADRAFT_41279 [Cochliobolus sativus ND90Pr]
Length = 353
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 31 WVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDA 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 91 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRQKLVILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +++
Sbjct: 135 EADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRR 194
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++QI ED S A + A+ ++R+AI L++
Sbjct: 195 IMQICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQS 231
>gi|226294707|gb|EEH50127.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb18]
Length = 352
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 30 WVEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDS 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQILKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI + E+ S A + A+ ++R+AI L++
Sbjct: 194 LTQICQAENVKHSEDGIAALIFSAEGDMRQAINNLQS 230
>gi|402074193|gb|EJT69722.1| replication factor C subunit 4 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 360
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 36 WVEKYRPIFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDS 95
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 96 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKLVILD 139
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ +++
Sbjct: 140 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRR 199
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E S A + A+ ++R+AI L++ A
Sbjct: 200 LLQIIEAEGVRHSEDGLAALVFSAEGDMRQAINNLQSTHA 239
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + L+++ DGN PH++I G G GK L HE+ G
Sbjct: 12 WVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIHCLAHEMLG-- 69
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + +I++
Sbjct: 70 ---ESYSQAVLELNASDDRGIDVVRN-----------QIKHFAQKKCHLPPGKHKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 116 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L++I + ED + I A+ ++R+AI L++ A
Sbjct: 176 LLEIIKAEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVA 215
>gi|336472626|gb|EGO60786.1| hypothetical protein NEUTE1DRAFT_144139 [Neurospora tetrasperma
FGSC 2508]
gi|350294141|gb|EGZ75226.1| putative replication factor C [Neurospora tetrasperma FGSC 2509]
Length = 357
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH +I G G GK + L ++ GDA
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLGDA 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ + +K P + ++++
Sbjct: 95 -----YKEAVLELNASDERGIEV-----------VRQRIKGFAQKKVTLPPGRHKIVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTHA 238
>gi|28950096|emb|CAD70859.1| probable REPLICATION FACTOR C (40 KDA SUBUNIT) [Neurospora crassa]
Length = 357
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH +I G G GK + L ++ GDA
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLGDA 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +E+ + +K P + ++++
Sbjct: 95 -----YKEAVLELNASDERGIEV-----------VRQRIKGFAQKKVTLPPGRHKIVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTHA 238
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 23/227 (10%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
+ W +K++P++L + L V + + PH+L G G+GK ++AL E+
Sbjct: 1 MEEIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREM 60
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA- 462
+G E W + AS +++ + G +KE A T +
Sbjct: 61 FG-----EHWQHNLHELNASDERGIDV-----------VRGKIKE----FARTAPIGGGG 100
Query: 463 --MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
+I + E D Q ++ M+ Y+ +C+ +L C IIE +++ C V + P
Sbjct: 101 FKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQ 160
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ L IA +E ++ +A A+ +LR+AI +L+ A
Sbjct: 161 GEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAA 207
>gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G G GK L HE+ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 69 ---RSYADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPPGKHKIVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 25/225 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + L E + GN PH+L G G+GK A+ L E+YG
Sbjct: 7 FWFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG- 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
E+W L ELN + + + +++E A T A +
Sbjct: 66 ----ERWRENTL----------ELNASDERG-----INVIRERVKEFARTAPAGGAPFKL 106
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+V+ E D Q ++ IM+ Y + + +L II+ + + C V + PP+
Sbjct: 107 VVLDEADNMTSDAQQALRRIMEMYAATTRFVLLANYVSRIIDPILSRCAVFRF-PPMPKP 165
Query: 524 IMEVLIQ-IARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+M +Q IA +E L+ I ++ ++R+AI L+ A
Sbjct: 166 LMAQRLQYIASQERIKLTEDGIDAIYEISQGDMRRAINLLQMAAA 210
>gi|221053736|ref|XP_002258242.1| replication factor c subunit [Plasmodium knowlesi strain H]
gi|193808075|emb|CAQ38779.1| replication factor c subunit, putative [Plasmodium knowlesi strain
H]
Length = 339
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 112/256 (43%), Gaps = 29/256 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L+ + + LK ++V GN P++L+ G G+GK + L E+ G
Sbjct: 17 IWIEKYRPENLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLG- 75
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
P A A +ELN + + +K + P + +I++
Sbjct: 76 -------------PQAKKAV-LELNAS-DDRGINVIRDRIKSFAKEIISLPPGKHKIIIL 120
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
EVD Q ++ IM+ Y+D+ + L C II+++++ C +I+ ++++
Sbjct: 121 DEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLK 180
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL 586
+++I E+ + + A +LRKA+ L++ A G E +
Sbjct: 181 RIVKICEMENIKYTDDGLETLTFIADGDLRKAVNCLQSTYA-------------GLEVIN 227
Query: 587 IELAAEILADPSPKRL 602
E I PSP+R+
Sbjct: 228 KENVLHICDIPSPERI 243
>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G G GK L HE+ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 69 ---RSYADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPPGKHKIVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|340904964|gb|EGS17332.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 803
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 16/221 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 480 YMVEKYRPVFLDDIVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGD 539
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
A + VL AS +++ + +K P + ++++
Sbjct: 540 A-----YKEAVLELNASDERGIDV-----------VRQRIKGFAQKKVTLPPGRHKIVIL 583
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ Y+++ + C IIE +++ C +++ +I++
Sbjct: 584 DEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDAQIVK 643
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 644 RLMQIIEAEKVEYSDDGLAALVFTAEGDMRQAINNLQSTVA 684
>gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 354
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 35 WVEKYRPIFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + ++++
Sbjct: 93 ---ESYKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFA 238
>gi|164426330|ref|XP_001728317.1| activator 1 37 kDa subunit [Neurospora crassa OR74A]
gi|157071292|gb|EDO65226.1| activator 1 37 kDa subunit [Neurospora crassa OR74A]
Length = 353
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH +I G G GK + L ++ GDA
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQLLGDA 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++ + +S V + A K L P + ++++
Sbjct: 95 Y------KEAVLELNASDERVRQRIKGFAQKKVTL--------------PPGRHKIVILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 135 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKR 194
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 195 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTHA 234
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 108/256 (42%), Gaps = 37/256 (14%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
IQK IE+L P W +K++P+ LN I H +++ V G PH+L+ G G+GK +
Sbjct: 6 IQK---IEELTP-WVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTS 61
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
+A+ E+YG+ + S+ +ELN + + +RD +
Sbjct: 62 TILAVCKELYGE---------------SRSSFVLELNASDDRG--------ISVVRDQIK 98
Query: 455 ITPEVSN----------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
E N +I++ E D Q ++ IM+ Y + + L C I
Sbjct: 99 TFAESKNHYNTCEKTSLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++++ C + P ++ + IA+ E+ DL+ + + ++R+ + L+
Sbjct: 159 PAIQSRCTSFRFSPLKKEYMINKALDIAKSENVDLTKDGLESLIRVGRGDMRRILNCLQV 218
Query: 565 CKALNYPFADDQPIPL 580
+ DQ + L
Sbjct: 219 VSLSHKNMTIDQNVIL 234
>gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi]
Length = 325
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + + LK DGN P+I+I G G GK + L +
Sbjct: 9 RAPWIEKYRPKTFDDIVGNSETVSRLKVFSEDGNPPNIIIAGPPGVGKTTTILCLARALL 68
Query: 405 GDACWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
G + + VL AS+ +++ + + A K L P+ +
Sbjct: 69 GGS-----FKDAVLELNASNERGIDVVRNKIKMFAQQKVTL--------------PQSRH 109
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+IV+ E D E Q ++ M+ Y+D+ + L C +IE +++ C +++ P
Sbjct: 110 KIIVLDEADSMTEAAQQALRRTMEIYSDTTRFCLACNSSEKVIEPIQSRCAMLRYSRPSD 169
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
E++ +I++ KE + I A+ ++R+A+ L++
Sbjct: 170 AEVLAQVIKVCDKEGVSYTSEGLEAIVFTAQGDMRQALNNLQS 212
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 15/236 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ H +LK+ + N PH+L G G+GK + +A+ E+YG
Sbjct: 21 WVEKYRPKSLDDVYSQDHTVSVLKKNLQTSNLPHMLFYGPPGTGKTSTILAMTKELYGPN 80
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
N +++L AS + N+ + +A + + K +D+L P +I++
Sbjct: 81 LIN----SRILELNASDERGI--NIVRKKIKNFAKLIISKPSKDDLEKYPCPPYKIIILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++ + L C II+ + + C + +E
Sbjct: 135 EADSMTSDAQSALRRTMEKYSNITRFCLICNYVTRIIDPLASRCTKFRFKSLNNDNAIER 194
Query: 528 LIQIARKEDFD-----LSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
L I++ E+ + ++ F + A +LR++I L++ F+ D PI
Sbjct: 195 LKFISKNENLNVENDEINNDFYKNLLQIANGDLRRSITLLQSASN----FSLDGPI 246
>gi|6324478|ref|NP_014547.1| replication factor C subunit 4 [Saccharomyces cerevisiae S288c]
gi|730503|sp|P40339.1|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4; AltName: Full=Activator 1 37 kDa subunit
gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
gi|285814797|tpg|DAA10690.1| TPA: replication factor C subunit 4 [Saccharomyces cerevisiae
S288c]
gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581076|dbj|GAA26234.1| K7_Rfc4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763163|gb|EHN04693.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296734|gb|EIW07836.1| Rfc4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 323
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G G GK L HE+ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 69 ---RSYADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPPGKHKIVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
Length = 382
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 19/236 (8%)
Query: 335 IQKAVVIEK---LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSG 391
I+K++++ K L+ W +K++P L+ + ++ L+++ DGN PH++I G G G
Sbjct: 54 IKKSLIMSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIG 113
Query: 392 KRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD 451
K L HE+ G + + VL AS + + N +K
Sbjct: 114 KTTSVHCLAHELLGRS-----YADGVLELNASDDRGIXVVRN-----------QIKHFAQ 157
Query: 452 NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
P + ++++ E D Q ++ M+ Y++S + C IIE +++ C
Sbjct: 158 KKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRC 217
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+++ ++++ L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 218 AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 273
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 12/230 (5%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ H ++L+ + N PH+L G G+GK + +AL
Sbjct: 32 RLQP-WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKS 90
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYAL---MGLVKEIRDNLAITPE 458
++G A + +++L AS + + ++ A+ L GL E + P
Sbjct: 91 LFGPALYR----SRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPP- 145
Query: 459 VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
+I++ E D + Q ++ M+ Y+ + L C IIE + + C + P
Sbjct: 146 --FKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKP 203
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ L QIA+ E L K+ + + +LR+AI L++ L
Sbjct: 204 LDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARL 253
>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
Length = 323
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G G GK L HE+ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 69 ---RSYADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPPGKHKIVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + LK + DGN PH++I G G GK L HE+ GD+
Sbjct: 12 WVEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIHCLAHELLGDS 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 72 -----YSQAVLELNASDDRGIDVVRN-----------QIKHFAQKKCHLPTGKHKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 116 EADSMTAGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L++I + ED + + A+ ++R+AI L++ A
Sbjct: 176 LLEITKAEDVKYTNDGLEALIFTAEGDMRQAINNLQSTVA 215
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 115/264 (43%), Gaps = 36/264 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H+ +K L V+ PH+L+ G G+GK + +A+ +IYG++
Sbjct: 38 WVEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPPGTGKTSTILAVARQIYGNS 97
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK-EIRDNLAITPEVSN--AMI 464
N +ELN + + +G+V+ EI+D + SN +I
Sbjct: 98 LAN---------------MTLELNSSDERG-----IGVVRQEIQDFASTRSVFSNKFKLI 137
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ +++ YT + + L C II ++++ C + P +
Sbjct: 138 ILDECDAMTQDAQAALRRVIEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFV 197
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD--------Q 576
E L +A E L + ++R+++ L++C + + D
Sbjct: 198 RERLQYVADIEKMKLGPGGLDAVVQLGSGDMRRSLNILQSCH-MAFDTVDQSAVYTCTGN 256
Query: 577 PIPLGWEEVLIEL----AAEILAD 596
P+P E VL L AE+ A+
Sbjct: 257 PLPADIERVLTWLLNDRVAEVFAN 280
>gi|346974683|gb|EGY18135.1| replication factor C subunit 4 [Verticillium dahliae VdLs.17]
Length = 361
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 39 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 96
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P+ + ++++
Sbjct: 97 ---ESYKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRHKLVILD 142
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 143 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKR 202
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 203 LMQIIEAESVQYSDDGLAALVFSAEGDMRQAINNLQS 239
>gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 323
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 111/248 (44%), Gaps = 24/248 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + LK +V DGN P++++ G G GK L +E+ G
Sbjct: 11 WVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMILSGLPGIGKTTSIHCLAYELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E++ Q + + +S +++ N +K+ P +I++
Sbjct: 69 ---EEYYHQATMELNASDDR---GIDVVRNK-------IKQFAQTKISLPPGRQKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ + E++
Sbjct: 116 EADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLAR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++I + ED + + A+ ++R+AI L++ A + F + DQP P
Sbjct: 176 LLEIIKMEDVQYNTEGLQALVFTAEGDMRQAINNLQSTVA-GFEFVNDVNVFKIVDQPHP 234
Query: 580 LGWEEVLI 587
L + +L+
Sbjct: 235 LVIQSILL 242
>gi|159110203|ref|XP_001705363.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
gi|157433446|gb|EDO77689.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
Length = 322
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 17/193 (8%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
K PF ++++P +L+G I + L+ GN P+IL G G GK +A+ L ++
Sbjct: 2 KALPFI-ERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLANQ 60
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ G S +ELN + + N + VK P
Sbjct: 61 MLG---------------AHRSVAFLELNASDERNVS-DIRAKVKTFAQKQVTLPAGIQK 104
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++ + E D E Q +++ IMD T S + L C + +IE V++ C V+++ P
Sbjct: 105 LVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPATQA 164
Query: 523 EIMEVLIQIARKE 535
E+++ L +I KE
Sbjct: 165 ELIKYLQEICEKE 177
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 24/222 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ HR + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 40 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
N + + L A+ + + ++I+D +L+ + S
Sbjct: 100 YQN-------------------MILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVK 140
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D + Q+ ++ +++ YT S + L C II ++++ C + P
Sbjct: 141 LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAV 200
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ E L + + E D+ + A + ++RKA+ L++
Sbjct: 201 HVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNILQS 242
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + LK+ V + N PH+L G G+GK A+A H++YG
Sbjct: 11 LWAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYG- 69
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ + VL AS +++ + G +KE ++ V +I++
Sbjct: 70 ----KNYQQFVLELNASDERGIDV-----------IRGKIKEFART-SVVGGVPFKLIIL 113
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ +M+ +T + + IL IIE +++ + + P ++++
Sbjct: 114 DESDNLTSDAQQALRRMMENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIK 173
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
L I E + + ++ ++RKAI L++ A+
Sbjct: 174 RLKWILENESVSYEESALEAVFEISEGDMRKAINVLQSASAI 215
>gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1]
Length = 323
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 24/248 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + LK +V DGN P+++I G G GK L +E+ GD
Sbjct: 11 WVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGD- 69
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + + AS +++ N +K+ P +I++
Sbjct: 70 ---EHYHQATMELNASDDRGIDVVRN-----------KIKQFAQTKISLPPGRQKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ ++ Y+++ + C IIE +++ C +++ + E++
Sbjct: 116 EADSMTPGAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLAR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L++I + ED + + A+ ++R+AI L++ A + F + DQP P
Sbjct: 176 LLEIIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQSTVA-GFGFVNDVNVFKIVDQPHP 234
Query: 580 LGWEEVLI 587
L + +L+
Sbjct: 235 LVIQSILL 242
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 22/222 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + L + + PH+L G +G GK A A+ IY
Sbjct: 66 REIWIEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 125
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L ELN + Q + +V++ N A + +
Sbjct: 126 GD-----DWRGNFL----------ELNASDQRG-----IDVVRDRIKNFARSSFGGHDYR 165
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 166 IIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 225
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
I + IA E+ +L+ + A ++R+AI +L+A
Sbjct: 226 AIADQTRDIAETEEIELTEDGLDALVYAAGGDMRRAINSLQA 267
>gi|303322344|ref|XP_003071165.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240110864|gb|EER29020.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 283
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 11/217 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQMLGDV 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++ + +S V + + +K P + ++++
Sbjct: 90 Y------KEAVLELNASDERVRFLAGID-----VVRNRIKGFAQKKVTLPPGKHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQIVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI ED S A + A+ ++R+AI L++
Sbjct: 199 LMQICEAEDVKHSDDGIAALVFSAEGDMRQAINNLQS 235
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 108/256 (42%), Gaps = 37/256 (14%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
IQK IE+L P W +K++P+ LN I H +++ V G PH+L+ G G+GK +
Sbjct: 6 IQK---IEELTP-WVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTS 61
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
+A+ E+YG+ + S+ +ELN + + +RD +
Sbjct: 62 TILAVCKELYGE---------------SRSSFVLELNASDDRG--------ISVVRDQIK 98
Query: 455 ITPEVSN----------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
E N +I++ E D Q ++ IM+ Y + + L C I
Sbjct: 99 TFAESKNHYNTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++++ C + P ++ + IA+ E+ DL+ + + ++R+ + L+
Sbjct: 159 PAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVDLTQDGLESLIRVGRGDMRRILNCLQV 218
Query: 565 CKALNYPFADDQPIPL 580
+ DQ + L
Sbjct: 219 VSLSHKNMTIDQNVIL 234
>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 12/228 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ H+ + + V PH+L+ G G+GK + +AL IYG
Sbjct: 45 WVEKYRPTSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 102
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
N+ VL AS +++ + ++ K K LA + +I
Sbjct: 103 --NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDSALA-----TFKLI 155
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ YT + + + + ++ + C + P +I
Sbjct: 156 ILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDI 215
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
++ ++ E +++ A+ + T +K ++R+A+ L+AC A + P
Sbjct: 216 RNLVDKVIEDEKVNITQDAASSLVTLSKGDMRRALNVLQACHASSTPL 263
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 28/227 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + LK V + PH++ G +G GK A A A+ E+YGD
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGVGKTASAQAIAREVYGDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 79 -WKENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYDHR 115
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 116 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGDD 175
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ + +IA E +L+ + A ++RKAI L+A +
Sbjct: 176 AVETQIREIAATETIELTDNGVDALVYAADGDMRKAINGLQAAAVMG 222
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PSSL+ + H+H L++ + PH+L G G+GK + MAL +YG +
Sbjct: 25 WVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTSTIMALAARLYGAS 84
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD--NLAITPEVSNAMIV 465
N VL AS +++ + G +K N+ T + + +++
Sbjct: 85 FRNN-----VLELNASDDRGIDV-----------VRGQIKAFASTRNVFSTQKDTFKLVI 128
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D + Q ++ +M+ YT + + + C II ++++ C + P ++
Sbjct: 129 LDEADAMTQAAQAALRRVMEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVE 188
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ + E + I + ++R+A+ L+AC A N
Sbjct: 189 RQIDSVIAAEHCQIDAKAKHAILQLCQGDMRRALNILQACHAAN 232
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 36/242 (14%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ H ++L+ + N PH+L G G+GK + +AL
Sbjct: 34 RLQP-WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKS 92
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT------ 456
++G A + + +ELN + + +G+V+E A T
Sbjct: 93 LFGPALYRSRI--------------LELNASDERG-----IGIVREKIKGFARTQLSQPT 133
Query: 457 ----------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIES 506
P +I++ E D + Q ++ M+ Y+ + L C IIE
Sbjct: 134 GLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEP 193
Query: 507 VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+ + C + P E L IA +E+ +L K+ + + +LR+AI +++
Sbjct: 194 LASRCSKFRFKPLDNSAAGERLKSIAEQENLNLEDGVIEKLISCGEGDLRRAITYMQSAA 253
Query: 567 AL 568
L
Sbjct: 254 RL 255
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 18/223 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ H + L++ V + PH++ G +G GK A A A+ E+YG
Sbjct: 17 IWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG- 75
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS +++ + N + G VK +I +
Sbjct: 76 ----EDWREHFLELNASDERGIDVVRDRIKNFARSSFGGVK-------------YRIIFL 118
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ ++ + + IL C II+ +++ C V + I
Sbjct: 119 DEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEA 178
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+IA E L+ + A ++RKAI L+A +
Sbjct: 179 QTREIAETEGISLTDDGVDALVYAAAGDMRKAINGLQAAAVMG 221
>gi|342875984|gb|EGU77649.1| hypothetical protein FOXB_11824 [Fusarium oxysporum Fo5176]
Length = 697
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + ++++
Sbjct: 93 ---ESYKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPAGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFA 238
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ H + L++ V + PH++ G +G GK A A A+ E+YG+
Sbjct: 17 IWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGE 76
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMI 464
W E H +ELN + + + +V++ N A + V +I
Sbjct: 77 D-WRE--------------HFLELNASDERG-----IDVVRDRIKNFARSSFGGVEYRII 116
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ ++ + + IL C II+ +++ C V + I
Sbjct: 117 FLDEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAI 176
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+IA E L+ + A ++RKAI L+A +
Sbjct: 177 EAQTREIAETEGISLTDDGVDALVYAAAGDMRKAINGLQAAAVMG 221
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 33/247 (13%)
Query: 345 RPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
RP W +K++P +LN H +LK + N PH+L G G+GK + +AL E+
Sbjct: 32 RPVPWVEKYRPKNLNDVSAQDHTISVLKRTLQSSNLPHMLFYGPPGTGKTSTVLALAKEL 91
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA-ITPEVSNA 462
YG P + +ELN + + + +V+E N A IT +++
Sbjct: 92 YG--------------PELMKSRVLELNASDERG-----ISIVREKVKNFARITVSTASS 132
Query: 463 ------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
+I++ E D + Q ++ M+ Y+ + L C II+ + +
Sbjct: 133 TQSSNYPCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASR 192
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C + P L +IA+ E+ + + ++ +LRKAI L++ L+
Sbjct: 193 CSKFRFKPLDEENAKLRLEEIAKMENVEYEDGVIDALIKVSEGDLRKAITYLQSAARLHN 252
Query: 571 PFADDQP 577
P +P
Sbjct: 253 PIIRPKP 259
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALA 396
A V++ +P W +K++P + + H+ E ++L + NCPH+L G G+GK A
Sbjct: 2 APVLQSSQP-WVEKYRPKQVKD-VAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTA 59
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+A+ H+++G E + ++VL AS + NV +A + + R
Sbjct: 60 LAIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAXVAVGSGHRQGGYPC 113
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P +I++ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 114 PPYK--IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
P++ EIM ++ I ++E+ +L + +++ ++ +LR+AI L+ L
Sbjct: 172 K-PLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARL 223
>gi|453087153|gb|EMF15194.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 349
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ G+A
Sbjct: 27 WVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGEA 86
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 87 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRQKIVILD 130
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 131 EADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKR 190
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ QI + E+ S A + A+ ++R+AI L++ A
Sbjct: 191 INQICKAENVQFSDDGLAALVFSAEGDMRQAINNLQSTHA 230
>gi|145250105|ref|XP_001396566.1| replication factor C subunit 4 [Aspergillus niger CBS 513.88]
gi|134082079|emb|CAK42196.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVYLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L Q+ E + + A + A+ ++R+AI L++
Sbjct: 194 LKQVCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQS 230
>gi|451999620|gb|EMD92082.1| hypothetical protein COCHEDRAFT_1193657 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 12/228 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ H+ + + V PH+L+ G G+GK + +AL IYG
Sbjct: 44 WVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 101
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
N+ VL AS +E+ + ++ K K +LA + +I
Sbjct: 102 --NKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKAGDSSLA-----TFKLI 154
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
V+ E D Q ++ IM+ YT + + + + ++ + C + P +I
Sbjct: 155 VLDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDI 214
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
++ ++ +E +++ + T +K ++R+A+ L+AC A + P
Sbjct: 215 RHLVDKVIEEEKVNITQDATDSLVTLSKGDMRRALNVLQACHASSTPL 262
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + DGN PH++I G G GK + L H++ G A
Sbjct: 25 WVEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMIISGMPGIGKTTSVLCLAHQLLGSA 84
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N + G ++ + NL P + ++++
Sbjct: 85 -----YREGVLELNASDERGIDVVRN-------KIKGFAQK-KVNL---PPGRHKIVILD 128
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ +I +
Sbjct: 129 EADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLNEQQIQKR 188
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L +I + E ++ A + A+ ++R+AI L++ A
Sbjct: 189 LSEICKAESVSITDDGMAALIMTAEGDMRQAINNLQSTVA 228
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H LK V + PH+L G +G+GK A ++ E+Y D
Sbjct: 19 WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN + Q + +V++ + A + S+ +I
Sbjct: 79 -WQENF--------------LELNASDQRG-----IDVVRDRIKDFARSSFGGYSHRIIF 118
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + I
Sbjct: 119 LDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTVDAIE 178
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +IA ED ++ + A ++RKAI AL+A +
Sbjct: 179 AQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVMG 222
>gi|440492768|gb|ELQ75308.1| Replication factor C, subunit RFC3 [Trachipleistophora hominis]
Length = 353
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 133/300 (44%), Gaps = 33/300 (11%)
Query: 351 KHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWN 410
K+QP +L+ +R A LK + PH+++ G+ G GKR L A ++ ++G
Sbjct: 6 KYQPKTLDDIQFNRKHASNLKNFTL-STIPHLIVHGRPGCGKRTLVYAFINHLFGKQPKT 64
Query: 411 EKWPTQVL--------VPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEV 459
+V+ + S +VE+ + N + K + ++K++ + I +
Sbjct: 65 HHRSIEVVSSSDKKITISYVESEEYVEICPSDYNFKD--KDVIQDVIKKMAETKPILSLI 122
Query: 460 SNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
S +IVI + +K + Q ++ ++ Y D+ ++I+ C D II+ +K+
Sbjct: 123 SRTKSEKLKLIVITKAEKMTKDAQAALRRTVETYVDNFRMIMICNDTTGIIDPIKSRMLC 182
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL----------E 563
++V + +++ L +I E +I + + N R+A+ L E
Sbjct: 183 LRVTVASSDVLLKTLSEINDVECIGSDEKTLKQIISDSHGNFRRALFFLQRMQLNSTGEE 242
Query: 564 ACKALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
K L + L WE V+ ++ ++ + S ++ +R + +LL + + P+LIL
Sbjct: 243 KTKRLK---KQEGEFKLEWETVVTDMVKMMVKEQSNTVVMNIRSHLNELLIKCIPPRLIL 299
>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
Length = 330
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + +LKE+V N PH++ G G+GK + AL HE++G
Sbjct: 6 WVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG-- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK-EIRDNLAITPEV--SNAMI 464
E +VL AS + NV + Y + + K +I T EV S ++
Sbjct: 64 --KENISERVLELNASDDRGI--NVVREKIKAYTRISISKNKIHSE---TKEVLPSWKLV 116
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
V+ E D E Q ++ I++ Y++ + IL C I + + + C + +
Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIK 176
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E L+ I + E+ D+ KI + +LR+A+ L+ C +N
Sbjct: 177 KEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCIN 221
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 12/223 (5%)
Query: 348 WADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P + + H+ E ++L + NCPH+L G G+GK A+A+ H+++G
Sbjct: 11 WVEKYRPKQVKD-VAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + ++VL AS + NV +A + + R P +I++
Sbjct: 70 ----ELYKSRVLELNASDDRGI--NVVRTKIKNFAAVAVGSGQRAGGYPCPPYK--IIIL 121
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D E Q ++ M+ Y+ + C IIE + + C + P++ EIM
Sbjct: 122 DEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFK-PLSEEIMS 180
Query: 527 V-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
++ I R+E +L + ++ ++ +LR+AI L+ L
Sbjct: 181 SRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARL 223
>gi|424814736|ref|ZP_18239914.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
gi|339758352|gb|EGQ43609.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
Length = 317
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 20/223 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + L V + + PH+L G +G+GK A+AL ++YGD
Sbjct: 5 WTEKYRPDTLSEVVGQEEIIDRLSAFVEEESIPHMLYAGPAGTGKTTSAVALAKDLYGDQ 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVI 466
WN+ + +E N A+ + + + ++I+D P E +I +
Sbjct: 65 -WNQNF--------------METN----ASDERGIDVVREKIKDFARTKPIEAEYKIIFL 105
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ +T++C+ IL C II+ +++ C V + + ++
Sbjct: 106 DEADALTPDAQQALRRTMEQFTENCRFILSCNYSSKIIDPIQSRCAVFRYNRLEEEDVKN 165
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +I E F +S + + +LR+ L+ N
Sbjct: 166 YIQRIGESEGFKVSEDALEAVMRVSDGDLRRVTNVLQTASIQN 208
>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
Length = 330
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + +LKE+V N PH++ G G+GK + AL HE++G
Sbjct: 6 WVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG-- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK-EIRDNLAITPEV--SNAMI 464
E +VL AS + NV + Y + + K +I T EV S ++
Sbjct: 64 --KENISERVLELNASDDRGI--NVVREKIKAYTRISISKNKIHSE---TKEVLPSWKLV 116
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
V+ E D E Q ++ I++ Y++ + IL C I + + + C + +
Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIK 176
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E L+ I + E+ D+ KI + +LR+A+ L+ C +N
Sbjct: 177 KEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCIN 221
>gi|344299747|gb|EGW30100.1| replication factor C, subunit RFC4 [Spathaspora passalidarum NRRL
Y-27907]
Length = 346
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 128/301 (42%), Gaps = 40/301 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H +LK + N PH+L G G+GK + +AL +++G
Sbjct: 17 WVEKYRPKNLDDVASQEHAVAILKRTLATANLPHMLFYGPPGTGKTSTILALSKQLFG-- 74
Query: 408 CWNEKWPTQVLVPVASSAHHVELN------VNLQAN--AKYALMGLVKEIRDNLAITPEV 459
P S + +ELN +N+ + +A + + ++LA P
Sbjct: 75 ------------PNLSKSRVLELNASDERGINIVRSKIKNFARLTISNPTPEDLANYPCP 122
Query: 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+I++ E D Q ++ M+ Y+ + L C II+ + + C +
Sbjct: 123 PYKIIILDEADSMTNDAQSALRRTMETYSGMTRFCLICNYITRIIDPLASRCSKFRFKLL 182
Query: 520 VTHEIMEVLIQIARKEDFDLSMT--FAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577
+ + L IA +ED L ++ + +LRKAI L++ L+ + + Q
Sbjct: 183 NNDDGLNRLKYIAEQEDLTLDQEEPVLQQVLDISGGDLRKAITYLQSASKLSNSYDEHQE 242
Query: 578 IP---------LGWEEVLIELAAEILADPSPK------RLVMVRGKIQKLLAEFVHPKLI 622
I + +EE++ EL I + +++ IQ+L+++ +H KLI
Sbjct: 243 ISGKLIRETAGVLYEEIIDELVNVIKGKNHTQISNYVNEIILQGWSIQQLISQ-LHDKLI 301
Query: 623 L 623
L
Sbjct: 302 L 302
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 28/227 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H LK V + PH++ G +G+GK A A+ EIY D
Sbjct: 25 WIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDDD 84
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 85 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYDHR 121
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V + +
Sbjct: 122 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDN 181
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I + +IA +D +++ + A ++RKAI AL+A +
Sbjct: 182 AIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVMG 228
>gi|400600989|gb|EJP68657.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 355
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L E+ G
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARELLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + +I++
Sbjct: 93 ---ESYKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLIILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNMSNKIIEPLQSRCAILRYAKLTDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E + S A + A+ ++R+AI L++
Sbjct: 199 LMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQS 235
>gi|302421348|ref|XP_003008504.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
gi|261351650|gb|EEY14078.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
Length = 361
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 39 WVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 96
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P+ + ++++
Sbjct: 97 ---ESYKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRHKLVILD 142
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 143 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKR 202
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 203 LMQIIEAESVQYSDDGLAALVFSAEGDMRQAINNLQS 239
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALA 396
A V++ +P W +K++P + + H+ E ++L + NCPH+L G G+GK A
Sbjct: 2 APVLQSSQP-WVEKYRPKQVKD-VAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTA 59
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+A+ H+++G E + ++VL AS + NV +A + + R
Sbjct: 60 LAIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGSGHRQGGYPC 113
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P +I++ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 114 PPYK--IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
P++ EIM ++ I ++E+ +L + +++ ++ +LR+AI L+ L
Sbjct: 172 K-PLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARL 223
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALA 396
A +++ +P W +K++P + + H+ E ++L + G+CPH+L G G+GK A
Sbjct: 2 APILQSTQP-WVEKYRPKQVKD-VAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTA 59
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+A+ H+++G E + ++VL AS + NV +A + + R +
Sbjct: 60 LAIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGTNQRKSGYPC 113
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P +IV+ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 114 PPFK--IIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
P++ EIM ++ I+++E L + +++ + +LR+AI L++ L
Sbjct: 172 K-PLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARL 223
>gi|253745639|gb|EET01440.1| Replication factor C, sub 2 [Giardia intestinalis ATCC 50581]
Length = 351
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 32/234 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +KH+P +L+ + H + K + GN PH+L+ G +G+GK L A++HE +G
Sbjct: 5 WTEKHRPLALDRIVHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLVHAMMHEFFGPR 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM---- 463
W A E N + K + R +A+ PE A+
Sbjct: 65 FWR--------------ARVNEFNASTDRGIKIVRERIKSIARTVIAVAPEDVKALYPCP 110
Query: 464 ----IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
IV+ E D Q ++ I++ Y+++ + + C II + + C P
Sbjct: 111 DFQVIVLDEADALTRESQAALRRIIEDYSETTRFCILCNYPSQIIAPIVSRCARFAFSPL 170
Query: 520 VTHEIMEVLIQIA-------RKEDFDLSMTFA---AKIATKAKQNLRKAIMALE 563
I++ L I R + LS+ + +++A ++ ++R AI L+
Sbjct: 171 PQTLIIDRLTAICYAEMHQLRNANEQLSLLASDALSEVAILSQGDMRAAITLLQ 224
>gi|403217950|emb|CCK72442.1| hypothetical protein KNAG_0K00740 [Kazachstania naganishii CBS
8797]
Length = 319
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 15/225 (6%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL W +K++P L+ + + + LKE+V DGN PH++I G G GK L +E
Sbjct: 4 KLELPWVEKYRPHKLDDIVGNEDTIERLKEIVKDGNMPHMIISGLPGIGKTTSIQCLANE 63
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ G+ + VL AS +++ N +K P +
Sbjct: 64 MLGEKLLG----SAVLELNASDDRGIDVVRN-----------QIKHFAQVKCHLPPGKHK 108
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D Q ++ M+ Y+++ + C IIE +++ C +++
Sbjct: 109 IVILDEADSMTSGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLNDE 168
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++++ L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 169 QVLKRLLQIIKLEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTAA 213
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 34/241 (14%)
Query: 337 KAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALA 396
K V +L+P W +K++P ++ H +L++ + N PH+L G G+GK +
Sbjct: 17 KHTVDAELQP-WVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTI 75
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA-I 455
+AL +++G + + +VL ELN + + + +V+E N A
Sbjct: 76 LALARQLFGP----DNFKNRVL----------ELNASDERG-----ISIVREKIKNFARQ 116
Query: 456 TPEVSNA-------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD 502
TP +I++ E D + Q ++ IM+ Y + L C
Sbjct: 117 TPRAQAVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTR 176
Query: 503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562
IIE + + C + P + L IA++E D+ + + T + +LR+AI L
Sbjct: 177 IIEPLASRCSKFRFTPLDSESATSRLTYIAKEEQIDVDTSVIDALITVSNGDLRRAITYL 236
Query: 563 E 563
+
Sbjct: 237 Q 237
>gi|342320961|gb|EGU12899.1| Replication factor C subunit 4 [Rhodotorula glutinis ATCC 204091]
Length = 438
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 31/257 (12%)
Query: 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILI---------KGQSGSGKRALA 396
PF +H+P +L+ + + + LK + DGNCPHI+I +G G GK
Sbjct: 99 PFLRAQHRPKTLDDIVGNTETIERLKVIARDGNCPHIIISLVERWVRTQGAPGIGKTTSI 158
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+AL + GD + E VL AS +++ N +K
Sbjct: 159 LALARALLGDKNYKEG----VLELNASDERGIDVVRN-----------RIKTFAQKKVTL 203
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P + +I++ E D Q ++ M+ Y+++ + L C IIE +++ C +++
Sbjct: 204 PLGRHKLIILDEADSMTTGAQQALRRTMELYSNTTRFALACNQSNKIIEPIQSRCAILRY 263
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD- 574
E+++ L +I E + + ++ ++R+AI L++ + AD
Sbjct: 264 ARLSDKELLKRLKEICEIEKVPHNEQGLTALIFTSEGDMRQAINNLQSTFSGFGFVGADE 323
Query: 575 -----DQPIPLGWEEVL 586
DQP P+ ++++
Sbjct: 324 VFKVCDQPHPVRVQQLV 340
>gi|374724905|gb|EHR76985.1| replication factor C small subunit [uncultured marine group II
euryarchaeote]
Length = 328
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 21/236 (8%)
Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
E + W ++H+P +++ Q L PH+L G G+GK AMAL
Sbjct: 10 EPMSELWVERHRPQAVSEIRGQHAIVQRLAVYSEKKEFPHLLFAGPPGTGKTTAAMALTK 69
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
+++G E++ +L E+N A+ + L + +++ +P
Sbjct: 70 DVFG-----EEYRRNLL----------EMN----ASDERKLESIRTKVKQFARTSPYGGA 110
Query: 462 AMIVIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+I+ E D Q ++ IM+ Y ++C+ IL C IIE +++ C V + P
Sbjct: 111 QFKIIFLDEADALTNDAQGALRRIMEQYAETCRFILSCNYSSKIIEPIQSRCAVFRFRPL 170
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
++ + +A E L + ++ +LRKA+ L+ A+N D
Sbjct: 171 SDADVNAQIHHVAEIEGVKLEDDAGDALTRISQGDLRKALTGLQVASAINMHITRD 226
>gi|358375659|dbj|GAA92238.1| activator 1 37 kDa subunit [Aspergillus kawachii IFO 4308]
Length = 352
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L Q+ E + + A + A+ ++R+AI L++
Sbjct: 194 LKQVCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQS 230
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 12/223 (5%)
Query: 348 WADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P + + H+ E ++L + NCPH+L G G+GK A+A+ H++YG
Sbjct: 11 WVEKYRPKQIKD-VAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGP 69
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + ++VL AS + NV +A + + R + P +I++
Sbjct: 70 ----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGSGQRQGVYPCPPYK--IIIL 121
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM- 525
E D E Q ++ M+ Y+ + C IIE + + C + P+ EIM
Sbjct: 122 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLPEEIMS 180
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
++ I +E L + +++ ++ +LR+AI L+ L
Sbjct: 181 NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARL 223
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H LK V + PH+L G +G+GK A ++ E+Y D
Sbjct: 19 WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN + Q + +V++ + A + S+ +I
Sbjct: 79 -WQENF--------------LELNASDQRG-----IDVVRDRIKDFARSSFGGYSHRIIF 118
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + I
Sbjct: 119 LDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIE 178
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +IA ED ++ + A ++RKAI AL+A +
Sbjct: 179 AQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVMG 222
>gi|70952026|ref|XP_745209.1| replication factor c subunit 4 [Plasmodium chabaudi chabaudi]
gi|56525460|emb|CAH78469.1| replication factor c subunit 4, putative [Plasmodium chabaudi
chabaudi]
Length = 336
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 118/275 (42%), Gaps = 33/275 (12%)
Query: 329 FDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQS 388
+E SF K ++++ W +K++P L + + LK ++V GN P++L+ G
Sbjct: 1 MEEDSF--KNRLLKRNIDIWIEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAGAP 58
Query: 389 GSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM-GLVK 447
G+GK + L E+ G S A L +N + ++ +K
Sbjct: 59 GTGKTTSILCLASEMLG-----------------SQAKKAVLELNASDDRGINVIRDRIK 101
Query: 448 EIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
+ P + +I++ EVD Q ++ IM+ Y+D+ + L C II+++
Sbjct: 102 SFAKEVISLPPGRHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDAL 161
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ C +I+ ++++ +++I E+ + I A +LRKA+ L++ A
Sbjct: 162 QSRCAIIRYFKLTDDQVLKRILKICEYENIKYTDDGLETITFIADGDLRKAVNCLQSTYA 221
Query: 568 LNYPFADDQPIPLGWEEVLIELAAEILADPSPKRL 602
G E + E I PSP+R+
Sbjct: 222 -------------GLEVINKENVLNICDIPSPERI 243
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 34/241 (14%)
Query: 337 KAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALA 396
K V +L+P W +K++P ++ H +L++ + N PH+L G G+GK +
Sbjct: 17 KHTVDTELQP-WVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTI 75
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA-I 455
+AL +++G + + +VL ELN + + + +V+E N A
Sbjct: 76 LALARQLFGP----DNFKNRVL----------ELNASDERG-----ISIVREKIKNFARQ 116
Query: 456 TPEVSNA-------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD 502
TP +I++ E D + Q ++ IM+ Y + L C
Sbjct: 117 TPRAQAVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTR 176
Query: 503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562
IIE + + C + P + L IA++E D+ + + T + +LR+AI L
Sbjct: 177 IIEPLASRCSKFRFTPLDSESATSRLTYIAKEEQIDVDTSVIDALITVSNGDLRRAITYL 236
Query: 563 E 563
+
Sbjct: 237 Q 237
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 19/271 (7%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L L+ + + PH+L G +G GK A A+ +Y
Sbjct: 13 REIWIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVY 72
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ + N A G +I
Sbjct: 73 GD-----DWRGNFLELNASDERGIDVVRDRIKNFARASFG-------------GYDYRII 114
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ ++D+ + +L C II+ +++ C V + P +
Sbjct: 115 FLDEADSLTSDAQSALRRTMEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAV 174
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEE 584
+ + IA E +L+ + A ++R+AI +L+A A D++ + L
Sbjct: 175 RKQVEAIAETEGIELTEDGLDALVYAAGGDMRRAINSLQAA-ATTGEVVDEEAVYLITST 233
Query: 585 VLIELAAEILADPSPKRLVMVRGKIQKLLAE 615
E E++ + R K++ LL +
Sbjct: 234 ARPEDIEEMVQSAIDGEFLAARSKLETLLVD 264
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 22/223 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P + + + L+ + + PH+L G +G GK A A+ IY
Sbjct: 14 REIWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIY 73
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD W L AS +++ V++ N A + +
Sbjct: 74 GD-----DWRGNFLELNASDERGIDV---------------VRDRIKNFARSSFGGHDYR 113
Query: 465 VIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
VI+ E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 114 VIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDD 173
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ E + IA E +++ + A ++R+AI +L+A
Sbjct: 174 AVAEQVRDIAAAEGIEVTEDGLDALVYAAGGDMRRAINSLQAA 216
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 22/281 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L H +LK+ + N PH+L G G+GK + +AL E++G
Sbjct: 25 WVEKYRPKKLEEVTAQDHAVTVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGP- 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E T+VL AS + + N +A + + K +++L P +I++
Sbjct: 84 ---ELAKTRVLELNASDERGISIVREKVKN--FARLTVSKSSKEDLEKYPCPPYKIIILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + ++
Sbjct: 139 EADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKSLEATNALDR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYPFADDQPIPLGWEEVL 586
L I+ KE KI ++ +LR+AI L+ A K ++Y L E++
Sbjct: 199 LKYISEKESVQYEEGTLEKILEISQGDLRRAITLLQSASKRISY---------LKVEKIR 249
Query: 587 IELAAEILADPSPKRLV-----MVRGKIQKLLAEFVHPKLI 622
I L E LA P +++ V K K++A++V +I
Sbjct: 250 I-LQVEELAGVVPTKILHEIAEKVATKDIKIIADYVDTFII 289
>gi|333987924|ref|YP_004520531.1| replication factor C small subunit [Methanobacterium sp. SWAN-1]
gi|333826068|gb|AEG18730.1| Replication factor C small subunit [Methanobacterium sp. SWAN-1]
Length = 322
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 23/231 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L+ + H LK+ + + + P+++ G +G GK A+AL + G
Sbjct: 5 WVEKYRPQTLDDVVGQDHIINRLKKYIKEETSMPNLMFTGPAGVGKTTTAIALAKAVLG- 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS A ++ ++ N K N V +I
Sbjct: 64 ----EYWRQNFLELNASDARGID---TVRHNIK------------NFCRLKAVGAPFRII 104
Query: 467 Y--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P +
Sbjct: 105 FLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPVKGRHV 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
M L IA E+ +S I A+ ++RKA+ L+A +++ +D
Sbjct: 165 MGRLEAIAAAENLKISPGAIESIVYFAEGDMRKAVNILQASSSMDEEVTED 215
>gi|392575134|gb|EIW68268.1| hypothetical protein TREMEDRAFT_44679 [Tremella mesenterica DSM
1558]
Length = 346
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 25/259 (9%)
Query: 330 DETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSG 389
D S I K + E W +K++P L+ + + + LK + DGN PHI+I G G
Sbjct: 9 DNISAIAKHIDAEGYEMPWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHIIISGMPG 68
Query: 390 SGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI 449
GK L H + G E + VL AS +++ N +K
Sbjct: 69 IGKTTSIHCLAHALLG-----ESYKEGVLELNASDERGIDVVRN-----------KIKSF 112
Query: 450 RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
P + +I++ E D Q ++ M+ Y+++ + L C IIE +++
Sbjct: 113 AQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQS 172
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
C +++ E+++ L ++ ED + + + A+ ++R+AI L++ +
Sbjct: 173 RCAILRYSKLKDAEVLKRLKELCEMEDVKHNDAGLSALIFTAEGDMRQAINNLQSTHS-G 231
Query: 570 YPFAD--------DQPIPL 580
+ F DQP P+
Sbjct: 232 FGFVSQDNVFKICDQPHPI 250
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + + L+ +V G+ PH+L+ G G GK + + L ++ G
Sbjct: 5 WVEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHH----VELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
E+W +Q ++ + +S + V A K +L P + +
Sbjct: 63 ---EEWFSQAVLELNASDDRGIDVIRSKVKTFAQQKMSL--------------PSGKHKI 105
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D E Q ++ M+ Y + + L C IIE +++ C V+++ E
Sbjct: 106 VILDEADSMTEGAQQALRRTMEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSE 165
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAI 559
I E L Q+ R E+ + + I A ++R A+
Sbjct: 166 IAERLEQVLRLENVEWENSGLEAILFTADGDMRNAL 201
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS ++ + ++ L+ + DGN P++++ G G+GK +AL HE+ G
Sbjct: 19 WVEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLG-- 76
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ V+ AS +++ + + A K L P + +I
Sbjct: 77 ---SNYKEGVIELNASDDRGIDVVRNKIKMFAQKKVTL--------------PPGRHKII 119
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ +++S + L C IIE +++ C +++ EI
Sbjct: 120 ILDEADSMTGGAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEI 179
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
+ L+++ E I A ++R+A+ L+A + + F + DQ
Sbjct: 180 LGRLMRVVEAEKVAYVPEGLEAIIFTADGDMRQALNNLQATYS-GFQFVNQENVFKVCDQ 238
Query: 577 PIPL 580
P PL
Sbjct: 239 PHPL 242
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 23/227 (10%)
Query: 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
W +K++P L + L+ V N PH++ G +G GK A A+A+ E Y
Sbjct: 5 AIWTEKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFYD 64
Query: 406 DACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA--- 462
D W E + ELN + + + +V+ N A T + +A
Sbjct: 65 D-TWAENFT--------------ELNASDERGIE-----VVRNTIKNFARTMPIGDAAFK 104
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D + Q ++ M+ Y+ +C+ IL C IIE +++ C V +
Sbjct: 105 IIFLDEADALTDAAQSALRRTMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYD 164
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I IA E LS I + ++R+AI AL++ L+
Sbjct: 165 AIASRAKYIADTEGLTLSEDALRAINYVSMGDMRRAINALQSASVLS 211
>gi|452981800|gb|EME81559.1| hypothetical protein MYCFIDRAFT_188590 [Pseudocercospora fijiensis
CIRAD86]
Length = 367
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 125/274 (45%), Gaps = 18/274 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ H+ + + V PH+L+ G G+GK + +AL +IYG
Sbjct: 46 WVEKYRPNSLSDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARKIYG-- 103
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
N+ VL AS +++ + ++ K G + + + ++ + +I
Sbjct: 104 --NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSKQDDSM---ATYKLI 158
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ YT + + + + ++ + C + P +I
Sbjct: 159 ILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDI 218
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF-ADDQPIPLG-- 581
++ ++ +E +++ + T +K ++R+A+ L+AC A + P +P+ G
Sbjct: 219 RRLVDKVIIEEGVNIASDATDSLVTLSKGDMRRALNVLQACHASSTPLHVPGEPVKEGKD 278
Query: 582 --WEEVLIELAAEILADPSPKRLVMVRGKIQKLL 613
+ + +E + +A P P + M+ IQ LL
Sbjct: 279 IQRDLITMETIYDCIAAPHPADIKMI---IQTLL 309
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 28/227 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + LK V + PHI+ G +G GK A + A+ EIYGD
Sbjct: 19 WIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGVGKTASSQAIAREIYGDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
W E + +ELN + Q + +RD + S
Sbjct: 79 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYNYR 115
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 116 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDD 175
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I + +IA E ++ + A ++RKAI L+A +
Sbjct: 176 AIEAQVREIADTEGIAVTDDGVDALVYAADGDMRKAINGLQAAAVMG 222
>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
chabaudi]
Length = 330
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 6/222 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + +LKE++ N PH++ G G+GK + AL HE++G
Sbjct: 6 WVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFG-- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E +VL AS + V + Y + + K +N P ++V+
Sbjct: 64 --KENISERVLELNASDDRGI--TVVREKIKAYTRISISKNKINNETNEPLPPWKLVVLD 119
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D E Q ++ I++ Y++ + IL C I + + + C + + E
Sbjct: 120 EADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPLNIKKEK 179
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L+ I E+ ++S KI + +LR+A+ L+ C ++
Sbjct: 180 LLYICNNENINISDDALTKIIETTQGDLRRAVSVLQLCSCID 221
>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
Length = 376
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 113/263 (42%), Gaps = 20/263 (7%)
Query: 324 PEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHIL 383
P+ R + + Q+ V L+P W +K++P +++ H +L++ + N PH+L
Sbjct: 8 PQNRQNQQAATAQRHTVDPALQP-WVEKYRPKTIDDVSAQEHTVSVLQKALTSTNLPHML 66
Query: 384 IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL------NVNLQAN 437
G G+GK + +AL +++G + + ++VL AS + + N Q
Sbjct: 67 FYGPPGTGKTSTILALSRQLFGP----DNFRSRVLELNASDERGISIVREKVKNFARQTP 122
Query: 438 AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC 497
A+ KE P +I++ E D + Q ++ IM+ + + L C
Sbjct: 123 RAQAVASDGKEY-------PCPPYKIIILDEADSMTQDAQGALRRIMETHARITRFCLVC 175
Query: 498 EDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRK 557
IIE + + C + P + L IA E+ +S + + + +LR+
Sbjct: 176 NYVTRIIEPLASRCSKFRFTPLDSSSAAARLSYIATNENVAVSPPVIDTLISTSGGDLRR 235
Query: 558 AIMALEACKALNYPFADDQPIPL 580
AI L++ L+ + D P P+
Sbjct: 236 AITYLQSASRLSS--STDPPTPI 256
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H LK V + PH+L G +G+GK A ++ E+Y D
Sbjct: 19 WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN + Q + +V++ + A + S+ +I
Sbjct: 79 -WQENF--------------LELNASDQRG-----IDVVRDRIKDFARSSFGGYSHRIIF 118
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + I
Sbjct: 119 LDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIE 178
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +IA ED ++ + A ++RKAI AL+A +
Sbjct: 179 AQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVMG 222
>gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara]
gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata]
Length = 299
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 18/222 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++PS+L I + + L+ + +GN P++L+ G G+GK + L E+ G
Sbjct: 7 IWIEKYRPSTLEEIIGNPEITKRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLAREMLG- 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
+ + V+ AS V++ N++ AK +L I P + +++
Sbjct: 66 ----SHFKSAVVELNASDDRGVDVVRENIKNFAKKSL------------ILPANKHKIVI 109
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ EVD E Q ++ IM+ Y+ + + L C IIE +++ C VI+ +I+
Sbjct: 110 LDEVDSMTEPAQQALRRIMEIYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLKDEQIL 169
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L+ I E+ + + A +LR+A+ L+ A
Sbjct: 170 KRLVTICDLENLTYTDEGMEALLFSADGDLRRAVNNLQIVSA 211
>gi|401840377|gb|EJT43220.1| RFC4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 323
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G GK L HE+ G++
Sbjct: 11 WVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPSIGKTTSVHCLAHELLGNS 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + +I++
Sbjct: 71 -----YADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPQGRHKIIILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L++I + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLEIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + L+++ DGN PH++I G G GK L HE+ G +
Sbjct: 13 WVEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCLAHELLGKS 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 73 -----YSQAVLELNASDDRGIDVVRN-----------QIKHFAQKKCHLPPGKHKIIILD 116
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 117 EADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 176
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L++I + E+ + I A+ ++R+AI L++ A
Sbjct: 177 LMEIIKAENVSFTNDGLEAIIFTAEGDMRQAINNLQSTVA 216
>gi|330945949|ref|XP_003306663.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
gi|311315764|gb|EFQ85258.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
Length = 353
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 31 WVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDA 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N + G ++ + + P ++++
Sbjct: 91 -----YKEAVLELNASDERGIDVVRN-------RIKGFAQK---KVTLAPG-RQKLVILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +++
Sbjct: 135 EADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRR 194
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++QI ED S A + A+ ++R+AI L++ A
Sbjct: 195 IMQIVEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFA 234
>gi|302510945|ref|XP_003017424.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
gi|302657578|ref|XP_003020508.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
gi|291180995|gb|EFE36779.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
gi|291184348|gb|EFE39890.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
Length = 362
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 95/217 (43%), Gaps = 6/217 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDT 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++ + +S LN L + +K P + ++++
Sbjct: 90 ------YKEAVLELNASDERGLLNYALNLFRIDVVRNRIKGFAQKKVTLPPGRHKLVILD 143
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++ + + C IIE +++ C +++ ++++
Sbjct: 144 EADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKR 203
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 204 LMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQS 240
>gi|402466719|gb|EJW02155.1| hypothetical protein EDEG_03399 [Edhazardia aedis USNM 41457]
Length = 354
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 137/313 (43%), Gaps = 43/313 (13%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P S + H + ++LK + + PH+L+ G G GK+ L ++ I+
Sbjct: 2 LWVEKYRPKSFDETKYHTNLVEILKSYSLK-SVPHLLVHGGPGHGKKTLIQNFINNIHQR 60
Query: 407 ACWN-------EKWPTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPE 458
+ +++ + S +E+ + K + GL+K +LA T
Sbjct: 61 EIKTSVKLSKIQGASSEIEISYLESEELIEITPGDYGYQDKLVIQGLIK----SLAQTKP 116
Query: 459 VSNAM----------IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
+ M IVI + D+ ++ Q ++ ++ Y+ + +LI+ CE+ IIE ++
Sbjct: 117 IIQMMMKDSKKDIRFIVINDADELSKDAQAALRRTVERYSTNFRLIMICEEMNTIIEPLR 176
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C +I+V EI + L I +E + I A+ ++RKA+ C A
Sbjct: 177 SRCLLIRVPGFSELEIEDFLKDILIREQSTIDHKTMLDIIKAARGSMRKAL-----CLAE 231
Query: 569 NYPF---------------ADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLL 613
N+ A++ I L +E+++ + +I +P + +R + L+
Sbjct: 232 NFALFAQSDDNKRSKRLKAAENPYIFLEYEKIINSIVFDIKKNPGSNTIYSIRKDLYTLI 291
Query: 614 AEFVHPKLILLVM 626
+ + PK+IL M
Sbjct: 292 SGCIPPKMILRAM 304
>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 12/228 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ H+ + + V PH+L+ G G+GK + +AL IYG
Sbjct: 45 WVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 102
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
N+ VL AS +++ + K+I + T + S A +I
Sbjct: 103 --NKNMRQMVLELNASDDRGIDV-----VREQIKTFSSTKQIFASAPKTGDSSLATFKLI 155
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ YT + + + + ++ + C + P +I
Sbjct: 156 ILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDI 215
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
++ ++ E +++ + T +K ++R+A+ L+AC A + P
Sbjct: 216 RNLVDKVIEDEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPL 263
>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 393
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 18/231 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ H+ + + V PH+L+ G G+GK + +AL IYG
Sbjct: 45 WVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG-- 102
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
N+ VL AS +++ + K+I A P ++
Sbjct: 103 --NKNMRQMVLELNASDDRGIDV-----VREQIKTFSSTKQI---FAAAPRAGDSSLATF 152
Query: 463 -MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+I++ E D Q ++ IM+ YT + + + + ++ + C + P
Sbjct: 153 KLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKD 212
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+I ++ ++ E +++ + T +K ++R+A+ L+AC A + P
Sbjct: 213 QDIRNLVDKVIEDEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPL 263
>gi|189195266|ref|XP_001933971.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979850|gb|EDU46476.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 353
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 31 WVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDA 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N + G ++ + + P ++++
Sbjct: 91 -----YKEAVLELNASDERGIDVVRN-------RIKGFAQK---KVTLAPG-RQKLVILD 134
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +++
Sbjct: 135 EADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRR 194
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++QI ED S A + A+ ++R+AI L++ A
Sbjct: 195 IMQIVEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFA 234
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 9/216 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W ++H+PSS+ RH L V GN PH+L G G+GK + +AL ++YG
Sbjct: 4 WVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLYGP- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + ++VL AS +++ N +A + + + P ++++
Sbjct: 63 ---ELYKSRVLELNASDERGIDVVRN--KIKHFASLAVSSSKSSSYPCPP---FKLVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ T + + C II + + C + P T ++E
Sbjct: 115 EADCMTTDAQSALRRTMETCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLER 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
L IA KE F L + + +LR+AI ++
Sbjct: 175 LNMIADKEGFQLPSDVTDALVNISGGDLRRAITMMQ 210
>gi|322703485|gb|EFY95093.1| putative replication factor C [Metarhizium anisopliae ARSEF 23]
Length = 357
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + ++++
Sbjct: 93 ---ESYKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFA 238
>gi|225554309|gb|EEH02609.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240277074|gb|EER40584.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H143]
gi|325095015|gb|EGC48325.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H88]
Length = 354
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ GD+
Sbjct: 30 WVEKYRPVFLDDIVGNTETIERLKIIARNGNMPHVIISGMPGIGKTTSILCLARQMLGDS 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQILKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI E S + A+ ++R+AI L++
Sbjct: 194 LTQICEAEKVKYSEDGLEALIFSAEGDMRQAINNLQS 230
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H+ L++ + PH+L G G+GK + +A + IYG
Sbjct: 22 WVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILACANRIYG-- 79
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
+ QV+ AS ++ +V+E + A T ++ ++ +I
Sbjct: 80 ---PNFRNQVMELNASDDRGID---------------VVREQIKSFASTKQIFSSAFKLI 121
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C I ++++ C + P EI
Sbjct: 122 ILDETDAMTLAAQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEI 181
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ + ++A KE+ +S + +K ++RKA+ L+AC A+ Y D+ +
Sbjct: 182 EKKVDEVAEKENCTISPEGKTALLRLSKGDMRKALNILQACHAV-YDVVDEAAV 234
>gi|358340400|dbj|GAA48300.1| replication factor C subunit 2, partial [Clonorchis sinensis]
Length = 965
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 16/211 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + L +GN P+I+I G G GK + L H + G +
Sbjct: 113 WVEKYRPVVLTDIVGNEATILRLTAFSREGNVPNIIIAGPPGCGKTTSILCLAHALIGSS 172
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS+ +++ N +K P +I++
Sbjct: 173 -----YKEAVLELNASNDRGIDVVRNK-----------IKMFAQKKVTLPPGRQKIIILD 216
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D E Q ++ M+ Y+ + + L C D +IE +++ C V++ +IM
Sbjct: 217 EADSMTEGAQQALRRTMEIYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLTAAQIMAR 276
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKA 558
LI++ R E+ + I A ++R+
Sbjct: 277 LIEVCRAENVSYTDEGLEAIVFTADGDMRQV 307
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 28/227 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + L+ V + PH++ G +G+GK A A+ E+Y D
Sbjct: 29 WIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 88
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 89 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARASFGGYDHR 125
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 126 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTET 185
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I + +IA +D +++ + A ++RKAI AL+A +
Sbjct: 186 AIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVMG 232
>gi|322701219|gb|EFY92969.1| putative replication factor C [Metarhizium acridum CQMa 102]
Length = 357
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 35 WVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQLLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P + ++++
Sbjct: 93 ---ESYREAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI E + S A + A+ ++R+AI L++ A
Sbjct: 199 LLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFA 238
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 12/222 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W ++++P S++ +H +L++ + N PH+L G G+GK + +AL ++YG
Sbjct: 9 WVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQLYG-- 66
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E ++VL AS + + + +++ A+ A+ + P ++++
Sbjct: 67 --PELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPNPDY-------PSPPYKIVIL 117
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D + Q ++ IM+ Y+ + L C IIE V + C + P
Sbjct: 118 DEADSMTQDAQGALRRIMEQYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLDVASTEA 177
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
L+ IA+ E L+ + ++ ++R++I L++ L
Sbjct: 178 RLLHIAQMEGLRLNPDLVPVLIRSSEGDMRRSITYLQSIARL 219
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 28/227 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + L+ V + PH++ G +G+GK A A+ E+Y D
Sbjct: 31 WIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 91 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARASFGGYDHR 127
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 128 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTET 187
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I + +IA +D +++ + A ++RKAI AL+A +
Sbjct: 188 AIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVMG 234
>gi|440632243|gb|ELR02162.1| replication factor C subunit 2/4 [Geomyces destructans 20631-21]
Length = 357
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G
Sbjct: 35 WVEKYRPVFLDDVVGNVETIERLKIIAREGNMPHMIISGMPGIGKTTSVLCLARQLLG-- 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS +++ N +K P+ ++++
Sbjct: 93 ---ESYKEAVLELNASDERGIDVVRNR-----------IKGFAQKKVTLPQGRQKLVILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 139 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAI 559
L+QI E+ + S A + A+ ++R+AI
Sbjct: 199 LLQIIEAENVEYSDDGLAALVFSAEGDMRQAI 230
>gi|320163905|gb|EFW40804.1| DNA replication factor C subunit Rfc4 [Capsaspora owczarzaki ATCC
30864]
Length = 366
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 111/250 (44%), Gaps = 31/250 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + L+ + +GN P+I+I GQ G+GK + L H++ G A
Sbjct: 53 WVEKYRPILLKDVVGNEDTVARLQIIAEEGNMPNIIIAGQPGTGKTTSILCLAHQLLGPA 112
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ ++ + A K L P +I
Sbjct: 113 -----YKNAVLELNASDDRGIDVVRNDIKMFAQKKVTL--------------PPGRQKVI 153
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D E Q ++ M+ Y+ + + L C IIE +++ C +++ +I
Sbjct: 154 ILDEADSMTEAAQQALRRTMEIYSATTRFALACNMSDKIIEPIQSRCAILRYTRLTDEQI 213
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
++ L++I E + + A+ ++R+A+ L++ + + F + DQ
Sbjct: 214 LKRLLEICDAEKVPRTEEGLTALIFTAQGDMRQAVNNLQSTFS-GFGFVNLDNVFKICDQ 272
Query: 577 PIPLGWEEVL 586
P PL +++L
Sbjct: 273 PHPLIVQKIL 282
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 28/227 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + L+ V + PH++ G +G+GK A A+ E+Y D
Sbjct: 29 WIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 88
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 89 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARASFGGYDHR 125
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 126 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTET 185
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I + +IA +D +++ + A ++RKAI AL+A +
Sbjct: 186 AIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVMG 232
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H +LK+ + + PH+L G G+GK + +AL E++G
Sbjct: 25 WVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTSTILALTKELFGP- 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E ++VL AS + + N +A + + K +++L P +I++
Sbjct: 84 ---ELTKSRVLELNASDERGISIVREKVKN--FARLTVSKPSKNDLEKYPCPPFKIIILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + M+
Sbjct: 139 EADSMTADAQSALRRTMETYSSVTRFCLICNYITRIIDPLASRCSKFRFKSLDESNAMDR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL-NYPFAD 574
L +A++E KI + +LRKAI L++ L NY D
Sbjct: 199 LQYVAKQESVICEDGALEKILIVSSGDLRKAITLLQSSSKLRNYTGTD 246
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L H L+ V + PH+L G +G+GK A A+ E+Y D
Sbjct: 19 WIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN + Q + +V++ + A + S+ +I
Sbjct: 79 -WRENF--------------LELNASDQRG-----IDVVRDRIKDFARSSFGGYSHRIIF 118
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + + I
Sbjct: 119 LDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIE 178
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +IA E+ D++ + A ++RKAI L+A +
Sbjct: 179 AQVREIAANEEIDVTDDGVDALVFAADGDMRKAINGLQAAAVMG 222
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L I + L + V + N PH+L G G+GK A AL H++YG+
Sbjct: 16 LWTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYGE 75
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD--NLAITPEVSNAMI 464
+ + + + L A+ + + + +++++ PE+ ++
Sbjct: 76 S-------------------YQQFMLELNASDERGIDTIREKVKEFARSKTPPEIPFKIV 116
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +M+ Y+ S + IL II+ +++ C + ++
Sbjct: 117 LLDEADNMTSDAQQALRRLMELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDV 176
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
++ L IA KE D I ++ ++RKAI L+A L
Sbjct: 177 IDRLKYIADKEGVDYEEDALDIIFEISEGDMRKAINILQASAYLG 221
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 7/229 (3%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H +LK+ + N PH+L G G+GK + +AL E++G
Sbjct: 25 WVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKELFGP- 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E +++L AS + + N +A + + K +++L P +I++
Sbjct: 84 ---ELMKSRILELNASDERGISIVREKVKN--FARLTVSKPSKNDLENYPCPPYKIIILD 138
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + P ++
Sbjct: 139 EADSMTSDAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNAIDR 198
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYPFADD 575
L +A +E I + +LR+AI L+ A K + Y A++
Sbjct: 199 LRYVATEESVSYEDDVLKTILDISAGDLRRAITLLQSAAKRIQYTGAEN 247
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 115/260 (44%), Gaps = 18/260 (6%)
Query: 319 KSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGN 378
+S+ E A E S ++ A K P W +K++PSSL+ I H+ + + +
Sbjct: 3 ESEPMDETPAVAEPSRVRGAASTNKNLP-WVEKYRPSSLDELISHKDIISTIDRFITEDR 61
Query: 379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA 438
PH+L G G+GK + +A ++YG+ + + VL AS + + V Q
Sbjct: 62 VPHLLFYGPPGTGKTSTILACAKKMYGN-----RMQSMVLELNASDDRGIGV-VREQ--- 112
Query: 439 KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498
+KE IT ++++ E D Q ++ +++ YT + + L C
Sbjct: 113 -------IKEFASTRTITSSGGTKLVILDEADAMTSDAQAALRRVIEKYTRNTRFCLICN 165
Query: 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKA 558
I ++++ C + P + ++++ L + E +++ A + A+ ++RK
Sbjct: 166 YVSKITPAIQSRCTRFRFAPLSSEQMLDRLNFVIESERVNVTDDGKAALMRLAQGDMRKV 225
Query: 559 IMALEACKALNYPFADDQPI 578
+ L++ A+ + D+ +
Sbjct: 226 LNILQST-AMAFDTVDETSV 244
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 7/226 (3%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +LN H +L+ + N PH+L G G+GK + +AL E
Sbjct: 30 RLQP-WVEKYRPKNLNDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKE 88
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+YG E ++VL AS + ++ + +A M L A+ P
Sbjct: 89 LYGP----ELMKSRVLELNASDERGI--SIVREKVKDFARMQLSNPSPAYRALYPCPPYK 142
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D + Q ++ M+ Y+ + L C II+ + + C +
Sbjct: 143 IIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDVG 202
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +IA KE L A + ++ +LRKAI L++ L
Sbjct: 203 NAKRRVEEIAEKEGVSLEDGAAETLIRCSEGDLRKAITFLQSAARL 248
>gi|299117064|emb|CBN73835.1| EsV-1-187 [Ectocarpus siliculosus]
Length = 270
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 119/264 (45%), Gaps = 36/264 (13%)
Query: 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ- 435
G+ PH+L+ G GS K L LL ++YG N + +V ASS H +E++V +
Sbjct: 16 GDIPHLLLHGLRGSDKMTLVRHLLEKLYGPGV-NRVTAEKRVVETASSKHTIEIDVRVSN 74
Query: 436 -----------ANAKYALMGLVKEIRDNLAITP-----EVSNAMIVIYEVDKAAEHIQYL 479
N Y + +KE+ +N +I + ++ IV+ ++ Q
Sbjct: 75 YHIEMEPSDAGVNDTYVVQHAIKEMANNGSIAAVSKNCDATHKTIVLRGAGDLSKQAQAG 134
Query: 480 IKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL 539
++ M+ +T SC+L+L + E +++ C +I+V P + E + I I K
Sbjct: 135 LRRTMEKFTASCRLVLVSTFASRVAEPLRSRCVLIRVPLP-SAENLAAAIGIDDK----- 188
Query: 540 SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEILADPSP 599
+I + +++ +A+ +A A D+ + W + + ++ + + SP
Sbjct: 189 --ALVLQIVESSGRSISRAMFMAKAGSA-------DKML---WVKYIESISTGVFLEQSP 236
Query: 600 KRLVMVRGKIQKLLAEFVHPKLIL 623
++L+ VR + +LL V L+L
Sbjct: 237 RKLIDVRDSLNELLVAGVPASLVL 260
>gi|389586506|dbj|GAB69235.1| replication factor C subunit 4 [Plasmodium cynomolgi strain B]
Length = 336
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 31/257 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ + + LK ++V GN P++L+ G G+GK + L E+ G
Sbjct: 17 IWIEKYRPECLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLG- 75
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM-GLVKEIRDNLAITPEVSNAMIV 465
+ A L +N + ++ +K + P + +I+
Sbjct: 76 ----------------AQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIII 119
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ EVD Q ++ IM+ Y+D+ + L C II+++++ C +I+ +++
Sbjct: 120 LDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVL 179
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV 585
+ +++I + E+ + + A +LRKA+ L++ A G E +
Sbjct: 180 KRIVKICQLENIKYTDDGLETLTFIADGDLRKAVNCLQSTYA-------------GLEVI 226
Query: 586 LIELAAEILADPSPKRL 602
E I PSP+R+
Sbjct: 227 NKENVLNICDIPSPERI 243
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 11/233 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PSSL+ H+ + V PH+L+ G G+GK + +AL IYG
Sbjct: 42 WVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARRIYG-- 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ V Q + + A +P +I++
Sbjct: 100 --TKNMRQMVLELNASDDRGIDV-VREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILD 156
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ IM+ YT + + + + ++ + C + P +I +
Sbjct: 157 EADAMTSTAQMALRRIMERYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTL 216
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
+ Q+ KE + + T +K ++R+A+ L+AC FA P+P+
Sbjct: 217 VDQVIEKEGVKIQPDAVDSLVTLSKGDMRRALNVLQAC------FASSIPLPM 263
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 7/247 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ H ++LK +V N PH+L G G+GK + +AL +YG
Sbjct: 24 WVEKYRPKSLDDVASQDHTVKVLKRTLVSANLPHMLFYGPPGTGKTSTILALAKSLYGPI 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ Q +A + + ++L P +I++
Sbjct: 84 LFK----SRVLELNASDERGI--SIVRQKIKNFARLTISNPSPEDLEKYPCPPYKIIILD 137
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + P + +
Sbjct: 138 EADSMTNDAQSALRRTMETYSGVTRFCLVCNYITRIIDPLASRCSKFRFKPLNNSDALGR 197
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF-ADDQPIPLGWEEVL 586
L IA E + ++ + +LR+AI L++ L+ ++ I +G ++
Sbjct: 198 LQYIAGHEGIEAEEGTLEEVLKISNGDLRRAITYLQSATRLHSSLKLLEEDISIGTNKIT 257
Query: 587 IELAAEI 593
++ E+
Sbjct: 258 VDSILEV 264
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 23/221 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W ++++P+ L + + L V + PH+L G +G GK A+AL E +G+
Sbjct: 8 IWIERYRPTRLADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALAREFFGE 67
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
A W+ + E+N + + + +V+ A T + A +
Sbjct: 68 A-WHINFR--------------EMNASDERG-----IDVVRNQIKQFARTSPLEGAEFKI 107
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+ + E D Q ++ M+ Y+ C+ IL C II+ +++ C + + P
Sbjct: 108 LFLDEADALTTDAQAALRRTMETYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEA 167
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
I E + +IA KE ++ I A+ ++RKAI AL+
Sbjct: 168 ISEEIGKIAGKEGITVTPDAIEAIVYIAQGDMRKAINALQG 208
>gi|269859750|ref|XP_002649599.1| replication factor C subunit [Enterocytozoon bieneusi H348]
gi|220066962|gb|EED44431.1| replication factor C subunit [Enterocytozoon bieneusi H348]
Length = 349
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 136/300 (45%), Gaps = 21/300 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P LN H H+ L + P+++ G GS K+ L +L++ +Y
Sbjct: 2 LWIEKYRPKELNAINTH-HDITALLQCFTLRTVPNLIFYGSVGSNKKTLVFSLINSLYKA 60
Query: 407 ACWNEKWPTQ-------VLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPE 458
+K T+ + V S + +N ++ N + + ++K++ ++ IT
Sbjct: 61 YPQFQKITTELQINGSRIDVSYLESNDVILINPSIYKNKDRVVVQNIIKKVAESKPITSF 120
Query: 459 VSNAM-----IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
++++ I+I + + + Q ++ M+ Y+ K+ + C + IIE +K+ +
Sbjct: 121 LNSSFHGYRTILIDQAENLTKDAQAALRITMEQYSSYFKIFMICTNINTIIEPIKSRSLL 180
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA-CKALNYPF 572
I+ +E++ +L I+ KE +++S+ IA + + +AI LE C+ +
Sbjct: 181 IRCRQFAENELITILETISLKEGYNISLDILKDIAINSNGDCGRAISLLEIYCQTVKQAE 240
Query: 573 A-----DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627
D + WEE L + ++ + + + +R + ++ + P L+LL MH
Sbjct: 241 TKKLKMDLMNFKVEWEEKL-DAIVHLIREAKAENMFRIRQLLYDIMIWNIEPSLVLLKMH 299
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 6/217 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H +LK+ + N PH+L G G+GK + +AL E+YG
Sbjct: 29 WVEKYRPKQLDDITAQGHAVSVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKELYGP- 87
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E +++L AS + + N +A + + K +++L P +I++
Sbjct: 88 ---ELMKSRILELNASDERGISIVREKVKN--FARLTVSKPSKNDLENYPCPPYKIIILD 142
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + P +
Sbjct: 143 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNSIGR 202
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L +AR+E I ++ +LR+AI L++
Sbjct: 203 LEYVAREESVQYDDDVMKCILDISEGDLRRAITLLQS 239
>gi|156095817|ref|XP_001613943.1| replication factor C subunit 4 [Plasmodium vivax Sal-1]
gi|148802817|gb|EDL44216.1| replication factor C subunit 4, putative [Plasmodium vivax]
Length = 336
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 31/257 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ + + LK ++V GN P++L+ G G+GK + L E+ G
Sbjct: 17 IWIEKYRPEYLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLG- 75
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM-GLVKEIRDNLAITPEVSNAMIV 465
+ A L +N + ++ +K + P + +I+
Sbjct: 76 ----------------AQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIII 119
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ EVD Q ++ IM+ Y+D+ + L C II+++++ C +I+ +++
Sbjct: 120 LDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVL 179
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV 585
+ +++I + E+ + + A +LRKA+ L++ A G E +
Sbjct: 180 KRIVKICQLENIKYTDDGLETLTFIADGDLRKAVNCLQSTYA-------------GLEVI 226
Query: 586 LIELAAEILADPSPKRL 602
E I PSP+R+
Sbjct: 227 NKENVLNICDIPSPERI 243
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 31/244 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ + + + L+ + DGN P++++ G G+GK +AL HE+ G
Sbjct: 14 WVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLG-- 71
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + + A K L P S+ ++
Sbjct: 72 ---ANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTL--------------PSGSHKIV 114
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y++S + L C IIE +++ C +++ EI
Sbjct: 115 ILDEADSMTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEI 174
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
+ L+ + E I A ++R+A+ L+A + + F + DQ
Sbjct: 175 LGRLMVVVEAEKVPFVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKVCDQ 233
Query: 577 PIPL 580
P PL
Sbjct: 234 PHPL 237
>gi|115398522|ref|XP_001214850.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
gi|114191733|gb|EAU33433.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
Length = 352
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 90 -----YKDAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKIIILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L Q+ E + + A + A+ ++R+AI L++
Sbjct: 194 LKQVCDAEKVEHTEDGLAALVFSAEGDMRQAINNLQS 230
>gi|354545639|emb|CCE42366.1| hypothetical protein CPAR2_200090 [Candida parapsilosis]
Length = 320
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 24/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK +V DGN P+++I G G GK L +E+ G
Sbjct: 9 WVEKYRPHVLDDIVGNEETIERLKIIVQDGNMPNMIISGLPGIGKTTSVHCLAYELLG-- 66
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + L AS +++ N +K+ P +I++
Sbjct: 67 --KEHYHQATLELNASDDRGIDVVRN-----------KIKQFAQTKISLPPGRTKIIILD 113
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ + E+++
Sbjct: 114 EADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKR 173
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L+ I + E+ + + A+ ++R+AI L++ A + F + DQP P
Sbjct: 174 LLDIIKSENVQYNNEGLQALIFSAEGDMRQAINNLQSTVA-GFGFVNDVNVFKIVDQPHP 232
Query: 580 LGWEEVL 586
L + +L
Sbjct: 233 LVIQNIL 239
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
IQK IE+L P W +K++P+ LN I H +++ V G PH+L+ G G+GK +
Sbjct: 6 IQK---IEELTP-WVEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTS 61
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
+A+ E+YG+ + S+ +ELN + + +RD +
Sbjct: 62 TILAVCKELYGE---------------SRSSFVLELNASDDRG--------ISVVRDQIK 98
Query: 455 ITPEVSN----------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
E N +I++ E D Q ++ IM+ Y + + L C I
Sbjct: 99 TFAESKNHYNTCEKTALKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKIT 158
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++++ C + P ++ + IA+ E+ +L+ + + ++R+ + L+
Sbjct: 159 PAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVELTKDGLDSLIHVGRGDMRRILNCLQV 218
Query: 565 CKALNYPFADDQPIPLGWEEV 585
+ DQ + L ++
Sbjct: 219 VSLSHKNMTIDQNVILSTLDI 239
>gi|429965353|gb|ELA47350.1| hypothetical protein VCUG_01119 [Vavraia culicis 'floridensis']
Length = 353
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 129/298 (43%), Gaps = 29/298 (9%)
Query: 351 KHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWN 410
K+QP +L + A+ LK + PH+++ G+ G GKR L A ++ ++G+
Sbjct: 6 KYQPKTLEDIQFNEKHAKNLKNFTL-STIPHLIVHGRPGCGKRTLVYAFINHLFGEQPKT 64
Query: 411 EKWPTQVL--------VPVASSAHHVELN-VNLQANAKYALMGLVKEIRDNLAITPEVSN 461
+V + S +VE+ + K + ++K++ + IT +S
Sbjct: 65 HHRSIEVTSSSDKKITISYVESDEYVEICPSDYNFKDKDVIQNVIKKMAETKPITSLISK 124
Query: 462 A------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+I+I +K + Q ++ ++ Y D+ ++IL C D II+ +K+ ++
Sbjct: 125 KRQDKLKLILITRAEKLTKDAQAALRRTVETYADNFRMILICNDITGIIDPIKSRMLCLR 184
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL----------EAC 565
+ + ++ L +I +E S +I N R+A+ L E
Sbjct: 185 ITVAPSDLLLRTLSEINTQEGICGSKETLKQIINDCNGNFRRALFFLQRTQLDGAGEEKS 244
Query: 566 KALNYPFADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
K L + L WE + ++ ++ + S ++ +R ++ +LL + V P+LIL
Sbjct: 245 KRLK---KQESTFKLDWEITVADVVEMMMKEQSNTMVLNIRLQLNELLIKCVPPRLIL 299
>gi|296810064|ref|XP_002845370.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
gi|238842758|gb|EEQ32420.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
Length = 352
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDT 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQS 230
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 20/219 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + + L+ V + H + G +G GK A A+ E+YGD
Sbjct: 18 WIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTSATAIARELYGD- 76
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAITPEVSNAMIVI 466
W L AS +++ + N A+ + G E R +I +
Sbjct: 77 ----DWRDNFLELNASDERGIDVVRDRIKNFARTSFGGY--EYR------------IIFL 118
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ ++++ + IL C II+ +++ C V + P + E
Sbjct: 119 DEADALTSDAQGALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAE 178
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ IA +E + + + A ++RKAI AL+A
Sbjct: 179 EMRHIAGEEGIEFTDDGLDALVYAADGDMRKAINALQAA 217
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 105/228 (46%), Gaps = 11/228 (4%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAM 397
A +++ +P W +K++P + ++L + G+CPH+L G G+GK A+
Sbjct: 2 APIVQSSQP-WVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 398 ALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
A+ H+++G E + ++VL AS + NV +A + + + P
Sbjct: 61 AIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGTNPKKGGYPCP 114
Query: 458 EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVD 517
+IV+ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 115 PYK--IIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 172
Query: 518 PPVTHEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
P++ EIM ++ I +E L + +++ ++ +LR+AI L++
Sbjct: 173 -PLSEEIMSSRILYICNEEGLHLDAEGLSTLSSISQGDLRRAITYLQS 219
>gi|325186968|emb|CCA21512.1| replication factor C subunit 2 putative [Albugo laibachii Nc14]
Length = 327
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 29/242 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ + ++ LK + DGN +I++ G G+GK + L + G A
Sbjct: 9 WVEKYRPTSLDDVVANQETITCLKAMARDGNMTNIILSGPPGTGKTTSILCLARALLGPA 68
Query: 408 CWNEKWPTQVLVPVAS---SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+L AS V + L A K L P + +I
Sbjct: 69 -----LKHAILELNASDDRGIDTVRTKIKLFAQQKVNL--------------PPGRHKLI 109
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y+ + + L C + IIE +++ C +++ I
Sbjct: 110 ILDEADSITGSAQQALRRTMEIYSSTTRFALACNNSTKIIEPIQSRCAILRFTRLKNELI 169
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-------LNYPFADDQP 577
+E L+ I R+E A I A+ ++R AI L+A A N A DQP
Sbjct: 170 LERLLIICREERLTYQDDGLAAIIFTAEGDMRNAINNLQATHAGFGAITDANVFKACDQP 229
Query: 578 IP 579
P
Sbjct: 230 HP 231
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 30/228 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + LK+ V P+++ G +G+GK A+ + EIYGD
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVGIAREIYGDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL-----AITPEVSNA 462
W E + +ELN + Q + +RD + + S+
Sbjct: 79 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYSHR 115
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V + +T
Sbjct: 116 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRF-TELTE 174
Query: 523 EIMEVLI-QIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +E + +IA E +++ + A ++RKAI L+A +
Sbjct: 175 DAIEAQVREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMG 222
>gi|395646102|ref|ZP_10433962.1| Replication factor C [Methanofollis liminatans DSM 4140]
gi|395442842|gb|EJG07599.1| Replication factor C [Methanofollis liminatans DSM 4140]
Length = 332
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 37/239 (15%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W++K++PS+L G + ++L GN PH+LI G +G+GK AL +YG
Sbjct: 2 LWSEKYRPSTLEGVLGQEEAVRVLSSFAESGNVPHLLIVGPTGTGKSIAVEALARTLYG- 60
Query: 407 ACWNEK---WPTQVLVPVASS--------AHHVELNVNLQANAKYALMGLVKEIRDNLAI 455
A W E +P L H + + + N KY LVK AI
Sbjct: 61 ANWQENTTVFPAADLFEQGKKYLEADERFGHIYKKDESFLTNFKY----LVKWYA---AI 113
Query: 456 TPEVSNAMIVIYEVDKA-AEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P + ++++E A + Q ++ IM+ Y+ +C+ + + II ++ + C I
Sbjct: 114 RPLDAGFKLMVFEGASAISREAQQGLRRIMERYSGTCRFVFLTTNGSAIIPAIASRCLPI 173
Query: 515 KVDPPVTHEIMEVLIQIARKE----------DFDLSMTFAAKIATKAKQNLRKAIMALE 563
P I L I E D DL I A +LR+A + L+
Sbjct: 174 TFVPVDDDLIRRRLTAILEGEGVAADRVSADDLDL-------IVPAAGGDLRRATILLQ 225
>gi|169598013|ref|XP_001792430.1| hypothetical protein SNOG_01804 [Phaeosphaeria nodorum SN15]
gi|160707641|gb|EAT91453.2| hypothetical protein SNOG_01804 [Phaeosphaeria nodorum SN15]
Length = 376
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 16/219 (7%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
+K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 53 VEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLARQLLGDA- 111
Query: 409 WNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYE 468
+ VL AS +++ N +K P ++++ E
Sbjct: 112 ----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRQKLVILDE 156
Query: 469 VDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVL 528
D Q ++ M+ Y+ + + C IIE +++ C +++ +++ +
Sbjct: 157 ADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRI 216
Query: 529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+Q+ ED S A + A+ ++R+AI L++ A
Sbjct: 217 MQVIEAEDVKYSDDGLAALVFSAEGDMRQAINNLQSTNA 255
>gi|67612780|ref|XP_667252.1| replication factor C subunit 5 [Cryptosporidium hominis TU502]
gi|54658364|gb|EAL37017.1| replication factor C subunit 5 [Cryptosporidium hominis]
Length = 201
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 421 VASSAHHVELNV-NLQANAKYALMGLVKEIRDNLAITPEVSNA----MIVIYEVDKAAEH 475
+ S HH++++ +L L+K++ + S + I E D +
Sbjct: 13 LCQSPHHMQISAPDLGTKDGIVTQYLIKQLSSQMGANSFFSKGPNYRVFTILEADVLSLK 72
Query: 476 IQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKE 535
Q ++ M+ Y+++ +LIL CE II +++ C I+V P E+++VL I+ E
Sbjct: 73 AQAGLRRTMEKYSNNSRLILHCEQLSSIIPPLRSRCLCIRVPLPSPEEVLQVLRFISNSE 132
Query: 536 DFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP--IPLGWEEVLIELAAEI 593
+ + + +I T+++ NLR+AI+ LE ++ + P + L W++V I++A +
Sbjct: 133 NLQVPNNYLEQIVTESECNLRRAILILETAHTQSF---SNPPSALKLPWQKVCIDIATSV 189
Query: 594 LADPSPKRL 602
P R
Sbjct: 190 SFLQKPPRF 198
>gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis]
Length = 325
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P + + + + L DGN P+I+I G G GK + L + G +
Sbjct: 12 WIEKYRPKTFDDIVGNSETVSRLTTFAHDGNAPNIIISGPPGVGKTTTILCLARALLGSS 71
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS+ +++ + + A K L P + +I
Sbjct: 72 -----FKEAVLELNASNEGGIDVVRNKIKMFAQQKVTL--------------PPGRHKII 112
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
V+ E D E Q ++ M+ Y+D+ + L C +IE +++ C +++ EI
Sbjct: 113 VLDEADSMTEAAQQALRRTMEIYSDTTRFCLACNASEKVIEPIQSRCAMLRYSKLSDAEI 172
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ ++++ KED + I A+ ++R+A+ L++
Sbjct: 173 LAQVLKVCEKEDISYTSDGLEAIVFTAQGDMRQALNNLQS 212
>gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT]
gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT]
Length = 305
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 21/198 (10%)
Query: 370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429
LK V N PH+L G G GK A A++++ EI+G+ W + + +E
Sbjct: 10 LKSYVATRNLPHLLFSGPPGVGKTAAAISIVREIFGEG-WRDNF--------------IE 54
Query: 430 LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY--EVDKAAEHIQYLIKWIMDGY 487
LN A+ + + + +++D + P VI+ E D Q ++ M+ Y
Sbjct: 55 LN----ASDERGIDVVRTKVKDFARMAPLGGAEFKVIFLDEADALTSDAQSALRRTMERY 110
Query: 488 TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKI 547
+ +C+ IL C IIE +++ C V + I + + IA +E +++ I
Sbjct: 111 SATCRFILSCNYSSKIIEPIQSRCAVYRFRALTPDAIEKRIRYIAEQEGVEVTEDGIEAI 170
Query: 548 ATKAKQNLRKAIMALEAC 565
A+ ++RKAI AL+A
Sbjct: 171 NYVARGDMRKAINALQAA 188
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 25/228 (10%)
Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
E+ W +K++P L+ + H L+ L+ + PH+L G G+GK +A
Sbjct: 13 EQSETIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAILACAR 72
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVEL---NVNLQANAK--YALMGLVKEIRDNLAIT 456
E++G ++ T VL AS +++ + A+ + YAL +K
Sbjct: 73 EMFG-----AQFKTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAGIK--------- 118
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
++++ E D Q ++ IM+ YT + + L C II ++++ C +
Sbjct: 119 ------LVILDEADAMTSAAQAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRF 172
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
P ++++ L IA +E + +A A+ ++R+AI +++
Sbjct: 173 QPVPVAQMIQRLEYIADREGVPVDRAAFDALARIAQGDMRRAIYLMQS 220
>gi|449479988|ref|XP_002192040.2| PREDICTED: replication factor C subunit 2-like [Taeniopygia
guttata]
Length = 409
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ +K++P L+ + + L+ +GN P+I+I G G+GK + L + G
Sbjct: 189 YRVEKYRPMKLSEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 248
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
A + VL AS+ +++ N +K P+ + +I++
Sbjct: 249 ALKDA-----VLELNASNDRGIDVVRNK-----------IKMFAQQKVTLPKGRHKIIIL 292
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +I+
Sbjct: 293 DEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILA 352
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L++I KED + I A+ ++R+A+ L++
Sbjct: 353 RLLKIVEKEDVAYTDDGLEAIIFTAQGDMRQALNNLQS 390
>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
Length = 363
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 124/300 (41%), Gaps = 30/300 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SLN H ++L + + GN PH+L G G+GK + +AL E+YG
Sbjct: 26 WVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGPN 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ + +A + + +++L P +I++
Sbjct: 86 L----YKSRVLELNASDERGI--SIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILD 139
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y + +L C II+ + + C +
Sbjct: 140 EADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLR 199
Query: 528 LIQIARKEDFDL-----SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW 582
L I ++E+ ++ + +LRKAI L++ L+ F + L
Sbjct: 200 LKYIGQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLIT 259
Query: 583 ------------EEVLIELAAEILADPSPKRL-------VMVRGKIQKLLAEFVHPKLIL 623
+++L EL I + RL +++ G ++L + +H KLIL
Sbjct: 260 IQSIRETAGILPDDILAELIQFIKSKTQQSRLIKYIDQSIILSGWSAQILLDQLHDKLIL 319
>gi|302412925|ref|XP_003004295.1| replication factor C subunit 5 [Verticillium albo-atrum VaMs.102]
gi|261356871|gb|EEY19299.1| replication factor C subunit 5 [Verticillium albo-atrum VaMs.102]
Length = 354
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562
II +++ +++V P EI +VL Q A +E + ++ +IA ++ +NLR+A++
Sbjct: 173 IIAPIRSRTLLVRVAAPTHAEICDVLGQSAEREGWPVAKGLHMRIAQESGRNLRRALLMY 232
Query: 563 EACKALNYPFADDQPI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKL 621
EA A N D I P WE ++ ++A EI+ + +P R++ VR K+ LL +
Sbjct: 233 EAVHAQNEKVTDSTRIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATT 292
Query: 622 ILLVMHY 628
IL + +
Sbjct: 293 ILKTLTF 299
>gi|121703562|ref|XP_001270045.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
gi|119398189|gb|EAW08619.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKIVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVQR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI E + + A + A+ ++R+AI L++
Sbjct: 194 LKQICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQS 230
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 102/246 (41%), Gaps = 26/246 (10%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +++ + +L++ + N PH+L G G+GK + +AL +
Sbjct: 145 RLQP-WVEKYRPKTIDDVSSQENTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQ 203
Query: 403 IYGDACW----------NEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDN 452
++G + +E+ T V + + A +V+L ++ K
Sbjct: 204 LFGPDLFRSRVLELNASDERGITVVREKIKTFARETPRHVSLSSDGK------------- 250
Query: 453 LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
P +I++ E D Q ++ IM+ Y+ + L C IIE + + C
Sbjct: 251 --TYPCPPFKLIILDEADSMTHDAQSALRRIMETYSRITRFCLVCNYVTRIIEPLASRCS 308
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+ P + I + E D+ +I A +LRKAI L+ + L+
Sbjct: 309 KFRFKPLAQGSSQARMEMIVKAEGVDIEDGVLDRILELAGGDLRKAITFLQTAQRLHGAT 368
Query: 573 ADDQPI 578
+ PI
Sbjct: 369 SPPTPI 374
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 99/225 (44%), Gaps = 28/225 (12%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ HR + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 33 LWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG- 91
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-------NLAITPEV 459
A + + + L A+ + + ++I+D + + P V
Sbjct: 92 ------------------AQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSV 133
Query: 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
++++ E D + Q+ ++ +++ YT S + L C II ++++ C + P
Sbjct: 134 K--LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPL 191
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ E L + E D+ + + + + ++RKA+ L++
Sbjct: 192 DAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQS 236
>gi|326472467|gb|EGD96476.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
112818]
Length = 352
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDT 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQS 230
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 106/226 (46%), Gaps = 19/226 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +++ + Q+L+E + G+ PH+L G G+GK + +A +++GD
Sbjct: 33 WVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDI 92
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ +VL AS +++ + ++A A+ + G + R P S ++++
Sbjct: 93 SRD-----RVLELNASDERGIQVVRDKVKAFAQLTVSGKRADGR------PCPSYKLVIL 141
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ T + + L C II + + C + P +++
Sbjct: 142 DEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIK 201
Query: 527 VLIQIARKEDFDLSMTFAAKIATKA----KQNLRKAIMALEACKAL 568
L +I E+ D+ +I +A + +LR+A+ AL+ C+ L
Sbjct: 202 RLREICEAENVDVG---EGEILNQAVDTCEGDLRRALTALQCCQRL 244
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 6/233 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H +LK + N PH+L G G+GK + +AL E+YG
Sbjct: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPH 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
N ++VL AS + + N +A + + K +LA P +I++
Sbjct: 84 LSN----SRVLELNASDERGISIVREKVKN--FARLTVSKPSESDLANYPCPPYKIIILD 137
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + + +
Sbjct: 138 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSR 197
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
L IA +E +I ++ +LRKAI L++ + D I L
Sbjct: 198 LQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITL 250
>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 327
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 108/237 (45%), Gaps = 27/237 (11%)
Query: 348 WAD---KHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
W D K++P SL+ + H+ +++ + G PH+L+ G G+GK + +AL +Y
Sbjct: 7 WDDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLY 66
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--- 461
G A H +ELN + + +V+E N A+T + +
Sbjct: 67 GP---------------AYRKHILELNASDDRG-----IDVVREQIKNFAMTKVLFSKGF 106
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D + Q ++ +++ +T + + + C I ++++ C + P
Sbjct: 107 KLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPE 166
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
EI + ++ +KE +L+ I ++ ++R+A+ L+AC A Y D+ +
Sbjct: 167 KEIQVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALNVLQACHA-AYDIVDETAV 222
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS L+ I H+ + + + PH+L G G+GK + +A ++YGD
Sbjct: 38 WVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLYGD- 96
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
K+ + +L AS ++ +V+E N A T ++ ++ +I
Sbjct: 97 ----KFRSMILELNASDDRGID---------------VVREQIKNFASTRKLFSSGFKLI 137
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ +++ YT + + L C II ++++ C + P +I
Sbjct: 138 ILDEADAMTQAAQNALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQI 197
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ + I +E +++ + ++ ++R+A+ L+A YP A ++ I
Sbjct: 198 SDRITHIINQEGINITQAGRQAVLKLSQGDMRRALNILQAVHT-GYPEATEETI 250
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 30/228 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + LK V + PH++ G +G+GK A A+ E+Y D
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 79 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYDHR 115
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++ + + IL C II+ +++ C V + +T
Sbjct: 116 IIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRF-TELTE 174
Query: 523 EIMEVLI-QIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +E I +IA +E +++ + A ++RKAI L+A +
Sbjct: 175 DAVEAQIREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAVMG 222
>gi|169776925|ref|XP_001822928.1| replication factor C subunit 4 [Aspergillus oryzae RIB40]
gi|83771665|dbj|BAE61795.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874280|gb|EIT83190.1| replication factor C, subunit RFC2 [Aspergillus oryzae 3.042]
Length = 352
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKIVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L Q+ E + + A + A+ ++R+AI L++
Sbjct: 194 LKQVCDAEKVEHTEDGIAALVFSAEGDMRQAINNLQS 230
>gi|326481689|gb|EGE05699.1| replication factor C subunit 4 [Trichophyton equinum CBS 127.97]
Length = 352
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDT 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQS 230
>gi|315044711|ref|XP_003171731.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
gi|311344074|gb|EFR03277.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
Length = 354
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDT 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQS 230
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 100/232 (43%), Gaps = 23/232 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H+ +++ + PH+L G G+GK + +A+ IYG
Sbjct: 33 WVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-- 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV---SNAMI 464
+ + Q+L AS ++ +V+E N A T + +I
Sbjct: 91 ---KDYRKQILELNASDDRGID---------------VVREQIKNFAETRTLFLKGYKLI 132
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C II ++++ C + P E+
Sbjct: 133 ILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEV 192
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
L + E L+ + +K ++R+A+ L+AC A +D+
Sbjct: 193 ERRLSGVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAYDLIGEDE 244
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ I H +++ + PH+L G G+GK + +A+ ++Y
Sbjct: 12 WVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYA-- 69
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
P ++ +ELN + +G+V+ N A T + + ++
Sbjct: 70 ------------PKEFNSMVLELNASDDRG-----IGIVRGSILNFASTRTIFKSGFKLV 112
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ +T++ + C II ++++ C + P +I
Sbjct: 113 ILDEADAMTNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQI 172
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ L + R+E+ D++ + T AK ++R+ I L++
Sbjct: 173 VPRLEFVVREENVDMTEDGKKALITLAKGDMRRVINILQS 212
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 24/222 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL HR + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 39 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 96
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
E++ +L ELN A+ + + ++I+D + + + S
Sbjct: 97 ---EQFHNMIL----------ELN----ASDDRGIDVVRQQIQDFASTQSFSFGAKSSVK 139
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D + Q+ ++ +++ YT + + L C II ++++ C + P
Sbjct: 140 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAV 199
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ E L + E D+S + A + + ++RKA+ L++
Sbjct: 200 HVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQS 241
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 348 WADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P + + H+ E ++L + NCPH+L G G+GK A+A+ H+++G
Sbjct: 11 WVEKYRPKQVKD-VAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + ++VL AS + NV +A + + R P +I++
Sbjct: 70 ----ELYKSRVLELNASDDRGI--NVVRTKIKDFAGVAVSSGQRQGGYPCPPFK--IIIL 121
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM- 525
E D E Q ++ M+ ++ + C IIE + + C + P++ E+M
Sbjct: 122 DEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFK-PLSEEVMS 180
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ ++ I +E L + +++ ++ +LR+AI L+
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQV 219
>gi|327297458|ref|XP_003233423.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326464729|gb|EGD90182.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 352
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD
Sbjct: 30 WVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQLLGDT 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+QI E S A + A+ ++R+AI L++
Sbjct: 194 LMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQS 230
>gi|428673231|gb|EKX74144.1| replication factor C subunit 2, putative [Babesia equi]
Length = 228
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 24/227 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++++++ N PH++ G G+GK + A+A+ +IYG
Sbjct: 9 WVEKYRPKKLSDVVFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGAE 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA---ITPEVSNA-- 462
E+ +ELN + + + R N++ I PE
Sbjct: 69 GMRERV--------------LELNASDERGIDVVRDRIKTYTRINISNNKINPETKRVMP 114
Query: 463 ---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
MI++ E D Q ++ +++ Y++ + IL C II + + C P
Sbjct: 115 NYKMIILDEADMITSDAQAALRRVIENYSNISRFILICNYLHKIIGPIYSRCSAFHFKPI 174
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NLRKAIMALEAC 565
+ ++ L I ++E + T A + TK Q ++RK+I L+ C
Sbjct: 175 EQNSQVDRLEYICKQEGIAYT-TSALQFLTKISQGDMRKSITILQVC 220
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 19/224 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L + L + V + N PH+L G G+GK A+AL H++YGD
Sbjct: 4 LWAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGD 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
+W +L AS + + ++ A+ L G ++ +++
Sbjct: 64 -----EWRRYLLELNASDERGIAVIRSKVKEFARSKLPG-------------DIPFKIVI 105
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ IM+ Y ++ + IL II+ +++ C + P ++
Sbjct: 106 LDEADNMTADAQQALRRIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVT 165
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L I +E I + ++RKAI L++ AL
Sbjct: 166 SRLRWICEQEKVKCDEDGLDVIYELSGGDMRKAINILQSASALG 209
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 102/223 (45%), Gaps = 26/223 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL HR + L + PH+L+ G G+GK + +A+ +IYG
Sbjct: 37 WVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYG-- 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK-EIRD-----NLAITPEVSN 461
++ +L ELN + + +G+V+ +I+D +L+ + +
Sbjct: 95 ---SQYGNMIL----------ELNASDERG-----IGVVRQQIQDFASAHSLSFGAKPAV 136
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D + Q+ ++ +++ YT S + L C II ++++ C + P
Sbjct: 137 KLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDG 196
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ E L I + E D+ + + ++RKA+ L++
Sbjct: 197 SHVSERLQHIIKSEGLDVDEGGLTALVRLSSGDMRKALNILQS 239
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 23/223 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H+ +++ + PH+L G G+GK + +A+ IYG
Sbjct: 41 WVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-- 98
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN---AMI 464
++ Q+L AS ++ +V+E N A T + + +I
Sbjct: 99 ---SEYRKQILELNASDDRGID---------------VVREQIKNFAETRTLFSKGFKLI 140
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C I+ ++++ C + P E+
Sbjct: 141 ILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPISEV 200
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L ++ E L+ + +K ++R+A+ L+AC A
Sbjct: 201 EKRLQKVIESEGVKLTDDGKKALLKLSKGDMRRALNVLQACHA 243
>gi|67540694|ref|XP_664121.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
gi|40738667|gb|EAA57857.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
gi|259480087|tpe|CBF70899.1| TPA: subunit of heteropentameric replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 289
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GD+
Sbjct: 30 WVEKYRPVFLDDVVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDS 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKIVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQIVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L Q+ E + A + A+ ++R+A+ L++
Sbjct: 194 LKQVCDAEQVKYTEDGLAALVFSAEGDMRQALNNLQS 230
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)
Query: 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405
P W +K++P SL+ H +LK + N PH+L G G+GK + +AL E+YG
Sbjct: 26 PPWVEKYRPKSLDDVSSQDHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTVLALAKELYG 85
Query: 406 DACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA-ITPEVSNAMI 464
++ VL AS + + + N +A +V +D++A P +I
Sbjct: 86 PELMKDR----VLELNASDERGIAIVRDSIKN--FAAQKVVAP-KDHIAEKYPCPPFKII 138
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y+ + L C II+ + + C + ++
Sbjct: 139 ILDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTRIIDPLASRCSKFRFRLLDGNDA 198
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L ++ E + KI A +LR+AI L++C L+
Sbjct: 199 LARLRHVSDAEQLSVEDGVLEKILEVANGDLRRAITILQSCSRLS 243
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 30/228 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + LK V + PH++ G +G+GK A A+ EIY D
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 79 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYDHR 115
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++ + + IL C II+ +++ C V + +T
Sbjct: 116 IIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRF-TELTD 174
Query: 523 EIMEVLI-QIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E + +IA +E +++ + A ++RKAI L+A +
Sbjct: 175 DATEAQVREIAAEEGIEVTDDGVDALVFAADGDMRKAINGLQAAAVMG 222
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 11/226 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H ++LK+ + GN PH+L G G+GK + +AL ++YG
Sbjct: 37 WVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGPN 96
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ Q +A + + D+L P +I++
Sbjct: 97 L----YKSRVLELNASDERGI--SIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILD 150
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y + + L C II+ + + C + +
Sbjct: 151 EADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNR 210
Query: 528 LIQIARKEDFDLSMTFA-----AKIATKAKQNLRKAIMALEACKAL 568
L IA++E+ L A ++ + ++RKAI L++ L
Sbjct: 211 LKYIAKEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSASKL 256
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 109/267 (40%), Gaps = 41/267 (15%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +LN + H+ L + PH+L+ G G+GK + +AL +++G
Sbjct: 24 WIEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVLALAKKVFG-- 81
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDN---------LAITPE 458
+ + + L A+ + + KEI+D + +
Sbjct: 82 -----------------PKYKSMTLELNASDDRGIDVVKKEIKDFAGTRTIFGLIVLLCR 124
Query: 459 VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
MI++ E D + Q+ ++ I++ YT + + L C II ++++ C + P
Sbjct: 125 TGFKMIILDEADNMTQTAQFALRRIIENYTANARFCLICNYVNKIIPALQSRCTRFRFSP 184
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
+ +I L +I KE+ + + + ++RK + L Q
Sbjct: 185 LTSADIQGNLERILDKENIKATPDALKAVEKISGGDMRKCLNIL-------------QSS 231
Query: 579 PLGWEEVLIELAAEILADPSPKRLVMV 605
+ +EV +E E DP+P ++ +
Sbjct: 232 SMASKEVTVESIYECTGDPNPSDVMWI 258
>gi|353227396|emb|CCA77906.1| probable RFC4-DNA replication factor C, 37 kDa subunit
[Piriformospora indica DSM 11827]
Length = 334
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 112/252 (44%), Gaps = 36/252 (14%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + +GNCPHI+I G G GK L H++ G A
Sbjct: 16 WVEKYRPQVLDDVVGNEETIDRLKVIAKEGNCPHIIISGLPGIGKTTSIHCLAHQLLGPA 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ + +K P + +I++
Sbjct: 76 -----YKEGVLELNASDERGIDV-----------VRSKIKSFAQKKVTLPPGRHKIIILD 119
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV----DPPVTHE 523
E D Q ++ M+ ++++ + L C IIE +++ C +++ D +
Sbjct: 120 EADSMTAGAQQALRRTMEIFSNTTRFALACNQSNKIIEPIQSRCAILRFTKLSDAQLMKR 179
Query: 524 IMEVL-IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD-------- 574
++E+L +Q+ ED ++ F ++ ++R+AI L++ + + F +
Sbjct: 180 LLEILGLQVQYNEDGLKALIFT------SEGDMRQAINNLQSTHS-GFGFVNGDNVFKVC 232
Query: 575 DQPIPLGWEEVL 586
DQP PL ++++
Sbjct: 233 DQPHPLIVQDLI 244
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 24/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L H L+ V + PH+L G +G+GK A A+ E+Y D
Sbjct: 19 WIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN + Q + +V++ + A + S+ +I
Sbjct: 79 -WRENF--------------LELNASDQRG-----IDVVRDRIKDFARSSFGGYSHRIIF 118
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + +T + +
Sbjct: 119 LDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRF-TELTEDAI 177
Query: 526 EVLI-QIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E + +IA E D++ + A ++RKAI L+A +
Sbjct: 178 EAQVREIAANEGIDVTDDGVDALVFAADGDMRKAINGLQAAAVMG 222
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALA 396
A V++ +P W +K++P + + H+ E ++L + +CPH+L G G+GK A
Sbjct: 2 APVLQSSQP-WVEKYRPKQVKD-VAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTA 59
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+A+ H+++G E + ++VL AS + NV +A + + R +
Sbjct: 60 LAIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGSNHRQSGYPC 113
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P S +I++ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 114 P--SFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIM-EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
P++ E+M ++ I +E L + +++ ++ +LR+AI L++ L
Sbjct: 172 -KPLSEEVMSNRILHICNEEGLSLGGEALSTLSSISQGDLRRAITYLQSATRL 223
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G A
Sbjct: 33 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 92
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS+ +++ + + A K L P+ + +I
Sbjct: 93 MKD-----AVLELNASNDRGIDVVRNKIKMFAQQKVTL--------------PKGRHKII 133
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +I
Sbjct: 134 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQI 193
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
M L ++ KE+ ++ I A+ ++R+A+ L++
Sbjct: 194 MMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQS 233
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 119/274 (43%), Gaps = 39/274 (14%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P ++ ++L + + + PH+L G G+GK + +AL E++G
Sbjct: 32 WVEKYRPKNIESVEGQDATTRVLAKTLHRADLPHMLFYGPPGTGKTSTILALARELFG-- 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL------AITPEVSN 461
P + +ELN + + + +RD + +I+P +N
Sbjct: 90 ------------PELMKSRVLELNASDERG--------ISVVRDKIKSFAKVSISP-ATN 128
Query: 462 A-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
A +I++ E D + Q ++ IM+ Y+ + L C IIE + + C
Sbjct: 129 AYPCPPFKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKF 188
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYPFA 573
+ P + + + L +I R E+ ++ A + + +LR++I L+ A K N A
Sbjct: 189 RFTPLSSTDTLSRLNEICRLENVKVAEPVLASLIKVSDGDLRRSITFLQSASKLRNGSSA 248
Query: 574 DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRG 607
DD+ + E+V E ++ D ++L+ G
Sbjct: 249 DDEAGEITQEDV--EEIGGVIPDTEIRKLMKTMG 280
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 6/221 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + Q+LK+ + N PH+L G G+GK + +A+ ++YG
Sbjct: 23 WVEKYRPKNLDEVSSQKTTVQILKKNLETANLPHMLFYGPPGTGKTSTILAMAKQLYGPR 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ T+VL AS + ++ + +A + + + +++ A P MI++
Sbjct: 83 LFK----TRVLELNASDERGI--SIVRERIKGFARLTVSRPXQEDKANYPCPPYKMIILD 136
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + +
Sbjct: 137 EADSMTGDAQSALRRTMETYSGITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGSALTR 196
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
L I KE D+ +I ++ +LR+AI L++ L
Sbjct: 197 LEYICGKESIDVDTNILKEILRISEGDLRRAINYLQSVSRL 237
>gi|406861841|gb|EKD14894.1| replication factor C [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 363
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R +K++P L+ + + + LK + DGN PH++I G G GK + L ++
Sbjct: 39 RCLSVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQLL 98
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
GD+ + VL AS +++ N +K P+ ++
Sbjct: 99 GDS-----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRQKLV 142
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y+ + + C IIE +++ C +++ ++
Sbjct: 143 ILDEADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQV 202
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++ L+QI E + + A + A+ ++R+AI L++
Sbjct: 203 VKRLLQIIEAEKVEYAEDGLAALVFSAEGDMRQAINNLQS 242
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 30/228 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H L+ V + PH+L G +G+GK A A+ E+Y D
Sbjct: 19 WIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 79 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYDHR 115
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++ + + IL C II+ +++ C V + +T
Sbjct: 116 IIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRF-TELTE 174
Query: 523 EIMEVLI-QIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +E I +IA +E +++ + A ++RKAI L+A +
Sbjct: 175 DALEAQIREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAVMG 222
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 117/264 (44%), Gaps = 12/264 (4%)
Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
E+ +P W +K++P L+ H +LK + N PH+L G G+GK + +AL
Sbjct: 19 EQTQP-WVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTILALTK 77
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
E++G ++VL AS + + N +A + + K +++L P
Sbjct: 78 ELFGPNL----IKSRVLELNASDERGISIVREKVKN--FARLTVSKPSKEDLEKYPCPPY 131
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+I++ E D Q ++ M+ Y++ + L C II+ + + C +
Sbjct: 132 KIIILDEADSMTADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKALDE 191
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLG 581
++ L +A++E+ + KI + +LR+AI L++ + + ++ I +
Sbjct: 192 TNALDRLKFVAQEENVNYKENVLEKILEISSGDLRRAITLLQSASKTS-TYTENSEITVN 250
Query: 582 WEEVLIELAAEILADPSPKRLVMV 605
L+E A ++ P+ ++ V
Sbjct: 251 ----LVEELAGVVPSPALNEIIEV 270
>gi|448825607|ref|YP_007418538.1| putative replication factor C small subunit [Megavirus lba]
gi|444236792|gb|AGD92562.1| putative replication factor C small subunit [Megavirus lba]
Length = 364
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 12/226 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L F+ ++ L K G H L G G+GK ++ +A+ EI+
Sbjct: 11 WIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIF--- 67
Query: 408 CWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + T+V+ AS + + + AK + +VK + I P S +I++
Sbjct: 68 --KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKP---DGTIIP--SYKIIIL 120
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D + Q ++ I++ Y+ + + C I +++K+ C I +++
Sbjct: 121 DEADSMTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMID 180
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
L +I+ KE LS + I + ++RKAIM L+ K L Y F
Sbjct: 181 KLKEISTKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYL-YSF 225
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 28/228 (12%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
+ W +K++P L + H + L+ V + PH+L G +G+GK A ++++ E+Y
Sbjct: 9 QEIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELY 68
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
GD W L AS +++ +RD + S
Sbjct: 69 GD-----DWQDNFLELNASDERGIDV------------------VRDRIKDFARSSFGGH 105
Query: 463 ---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+I + E D + Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 106 NYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQL 165
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L +IA E + + + A ++R+AI AL+A A
Sbjct: 166 GDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASA 213
>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans CBS 6340]
Length = 322
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 109/253 (43%), Gaps = 25/253 (9%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL W +K++P L + + L+++ DGN PH++I G G GK L HE
Sbjct: 7 KLELPWVEKYRPHLLKDIVGNEETITRLQQIAQDGNMPHLIISGLPGIGKTTSVSCLAHE 66
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+ G+A + VL AS +++ N +K+ P +
Sbjct: 67 LLGNA-----YSQAVLELNASDDRGIDVVRN-----------QIKQFAQKKCSLPPGRHK 110
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D Q ++ M+ Y+++ + C IIE +++ C +++
Sbjct: 111 IVILDEADSMTAGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLQDD 170
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD-------- 574
+++ L+++ + E+ + I A+ ++R+A+ L++ A Y +
Sbjct: 171 QVLRRLLEVIQAENVQYTNDGLEAIIFTAEGDMRQALNNLQSTVA-GYGLVNGENVFKIV 229
Query: 575 DQPIPLGWEEVLI 587
D P PL + +L+
Sbjct: 230 DSPHPLIVKRMLL 242
>gi|219852477|ref|YP_002466909.1| replication factor C small subunit 2 [Methanosphaerula palustris
E1-9c]
gi|219546736|gb|ACL17186.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 332
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 39/240 (16%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W + ++P+ L + L GN PH+LI G G+GK A A +Y D
Sbjct: 2 LWIETYRPAVLGEILGQDSVVASLSSFAASGNVPHLLISGPHGTGKTAAIEAFAKVLYHD 61
Query: 407 ACWNEK---WPTQVLVPVASS--------AHHVELNVNLQANAKYALMGLVKEIRDNLAI 455
W E + T L + AH + +++L AN KY +R +I
Sbjct: 62 H-WEENTSIFQTGDLFEQGKAYLEADERYAHIYQKDLSLIANFKYI-------VRWYASI 113
Query: 456 TPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
P + ++++E D A Q ++ IM+ ++ +C+ ILC ++ II ++ + C
Sbjct: 114 RPLDAPFKLMVFE-DAGALTREAQQALRRIMEQFSGTCRFILCAQNQSAIIPAIASRCLP 172
Query: 514 IKVDP----PVTHEIMEVLIQIA------RKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ P + + EVL +A ED DL I A+ +LR+AIM L+
Sbjct: 173 LFFGPIANQVIEDRLREVLAGVAGDRPPVTDEDLDL-------IIQAARGDLRRAIMMLQ 225
>gi|410898978|ref|XP_003962974.1| PREDICTED: replication factor C subunit 2-like [Takifugu rubripes]
Length = 350
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G +
Sbjct: 34 WVEKYRPLKLNEVVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGAS 93
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS+ +++ + + A K L P + +I
Sbjct: 94 TKD-----AVLELNASNDRGIDVVRNKIKMFAQQKVTL--------------PRGRHKII 134
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ IM+ Y+ + + L C IIE +++ C V++ +I
Sbjct: 135 ILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQI 194
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
+ L ++ KE +S + A+ ++R+A+ L++ A + F + D+
Sbjct: 195 LARLQEVVEKEALSVSDDGLEAVIFTAQGDMRQALNNLQSTNA-GFGFVNSENVFKVCDE 253
Query: 577 PIPL 580
P PL
Sbjct: 254 PHPL 257
>gi|334349834|ref|XP_003342265.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit
2-like, partial [Monodelphis domestica]
Length = 414
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 48/301 (15%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKR----ALAMALLHEI 403
W +K++P LN + + L+ +GN P+I+I G G+GK LA ALL
Sbjct: 78 WVEKYRPMKLNEIVGNEDTVSRLEVFAREGNVPNIIISGPPGTGKTTSILCLARALLGPS 137
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
DA VL AS+ +++ N +K P + +
Sbjct: 138 LKDA---------VLELNASNDRGIDVVRNK-----------IKMFAQQKVTLPRGRHKI 177
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +
Sbjct: 178 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ 237
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------D 575
++ L+ I KE + + I A ++R+A+ L++ + + F + D
Sbjct: 238 VLARLMTIIEKEKVEYTDDGLEAIVFTAXGDMRQALNNLQSTHS-GFGFINSENVFKVCD 296
Query: 576 QPIPLGWEEVL-------IELAAEILA-----DPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+P PL +E+L I+ A +ILA SP+ ++ G I ++ F P+ +
Sbjct: 297 EPHPLLVKEMLQHCVSANIDEAYKILAHLWRLGYSPEDVI---GNIFRVCKTFQMPEYLK 353
Query: 624 L 624
L
Sbjct: 354 L 354
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 25/225 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ + + + + G PH+L G G+GK + +A+ EIYG
Sbjct: 7 WIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAREIYG-- 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
+ + VL AS +++ V+ N A T ++ N
Sbjct: 65 ---KNYKNMVLELNASDDRGIDV---------------VRNQIKNFASTRQIFNQGNSFK 106
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ I++ +T +C+ + + ++ + C + P T
Sbjct: 107 LIILDEADAMTNAAQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTE 166
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
I E + + KE D+ + +K ++R+A+ L+ACKA
Sbjct: 167 AIRERIKVVITKEQVDIDAKAVDALVQLSKGDMRRALNVLQACKA 211
>gi|342181603|emb|CCC91083.1| putative replication factor C, subunit 2 [Trypanosoma congolense
IL3000]
Length = 347
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 106/221 (47%), Gaps = 7/221 (3%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEI 403
RP W +K++P SL+ Q L+ ++ G + PH L G G+GK +A+ HE+
Sbjct: 19 RP-WVEKYRPKSLDEVKSQEEVVQALRSTLLQGASMPHFLFHGPPGTGKTTAILAVAHEM 77
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
+G + ++V AS ++ + +++ A+ A+ + ++++ + + P
Sbjct: 78 FGP----DYIKSRVRELNASDDRGIQVIREKVKSFAQAAVGTVQQKVQSDGKVYPVPPFK 133
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D Q ++ +M+ ++D + + C II+ + + C + P +
Sbjct: 134 LIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKQ 193
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ E + ++A +E+ +S + + +LR AIM L+
Sbjct: 194 ALHERISEVASRENIKISTASMNALDHVSGGDLRLAIMYLQ 234
>gi|119467812|ref|XP_001257712.1| DNA replication factor C subunit Rfc4, putative [Neosartorya
fischeri NRRL 181]
gi|119405864|gb|EAW15815.1| DNA replication factor C subunit Rfc4, putative [Neosartorya
fischeri NRRL 181]
Length = 348
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 20/217 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ G+A
Sbjct: 30 WVEKYRPIFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGEA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL ELN + + M +K P + ++++
Sbjct: 90 -----YKEAVL----------ELNASDERG-----MSRIKGFAQKKVTLPPGRHKIVILD 129
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 130 EADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQVVKR 189
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI E + + A + A+ ++R+AI L++
Sbjct: 190 LKQICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQS 226
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P S++ + H+ +++ + PH+L G G+GK + +A+ IYG+
Sbjct: 41 WVEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIYGN- 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV---SNAMI 464
+ Q+L AS ++ +V+E N A T + +I
Sbjct: 100 ----DYRKQILELNASDDRGID---------------VVREQIKNFAETRTLFLKGYKLI 140
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C II ++++ C + P E+
Sbjct: 141 ILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEV 200
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L + E L+ + +K ++R+A+ L+AC A
Sbjct: 201 ERRLNSVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACHA 243
>gi|403411420|emb|CCL98120.1| predicted protein [Fibroporia radiculosa]
Length = 361
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 109/264 (41%), Gaps = 42/264 (15%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILI-----------------KGQSGS 390
W +K++P +L+ + + + LK + DGNCPHI+I KG G
Sbjct: 25 WVEKYRPHALDDIVGNTETIERLKVIAKDGNCPHIIISVGPPKHPFFARLMARPKGMPGI 84
Query: 391 GKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIR 450
GK L H++ GDA + VL AS +++ N +K
Sbjct: 85 GKTTSIHCLAHQLLGDA-----YKEGVLELNASDERGIDVVRN-----------KIKAFA 128
Query: 451 DNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510
P + ++++ E D Q ++ M+ Y ++ + L C IIE +++
Sbjct: 129 QKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSR 188
Query: 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
C +++ EI++ L++I E + + ++ ++R+AI L++ + +
Sbjct: 189 CAILRYAKLRDTEILKRLLEICEMEKVQYNDDGLTALIFTSEGDMRQAINNLQSTNS-GF 247
Query: 571 PFAD--------DQPIPLGWEEVL 586
F DQP P+ + ++
Sbjct: 248 SFVSGDNVFKVCDQPHPIIVQSII 271
>gi|253742120|gb|EES98971.1| Replication factor C, subunit 3 [Giardia intestinalis ATCC 50581]
Length = 321
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 21/222 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS+ G + H ++ LV +G PH++ G+ G+GK L AL++E++GD
Sbjct: 4 WVEKYRPSTTEGVVSHEVIIAAIRALVREGRLPHMIFYGKPGTGKTTLIKALVNELFGD- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
A S H +ELN + + + VK + ++ + S+A
Sbjct: 63 --------------AVSTHVLELNASDDSGVD-VIRQTVKGFVTSGSVLSQQSSATAKFK 107
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D + Q ++ +M+ + L C ++ ++ + C + P
Sbjct: 108 IVIMDECDHMSSVAQASLRRLMETSIKHARFCLLCNYPEKLLPAILSRCCAFRFLPVPRE 167
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ +L +IA E+ L+ A I +LR+AI L++
Sbjct: 168 SCLLMLERIADSEEMKLAPGTLAAIHAVTDGDLRQAINVLQS 209
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 26/223 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL HR + L + PH+L+ G G+GK + +A+ +IYG
Sbjct: 38 WVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYG-- 95
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK-EIRD-----NLAITPEVSN 461
++ +L ELN + + +G+V+ +I+D +L+ + +
Sbjct: 96 ---SQYGNMIL----------ELNASDERG-----IGVVRQQIQDFASAHSLSFGAKPAV 137
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D + Q+ ++ +++ YT S + L C II ++++ C + P
Sbjct: 138 KLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDG 197
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ E L I + E D+ + + + ++RK++ L++
Sbjct: 198 SHVSERLRHIIKSEGLDVDEGGLSALVRLSNGDMRKSLNILQS 240
>gi|296419853|ref|XP_002839506.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635667|emb|CAZ83697.1| unnamed protein product [Tuber melanosporum]
Length = 358
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 23/246 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + LK + DGN PH++I G G GK + L + GDA
Sbjct: 32 WVEKYRPIFLEDIVGNSETVERLKIIGKDGNMPHLIISGMPGIGKTTSVLCLARALLGDA 91
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P ++++
Sbjct: 92 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRQKVVILD 135
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +++
Sbjct: 136 EADSMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVLHR 195
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-LNYPFAD------DQPIPL 580
L++I E + S A + A+ ++R+AI L++ A + AD D P P+
Sbjct: 196 LLEICLAEKVEHSEEGLAALIFSAEGDMRQAINNLQSTVAGFGFVSADNVFKVVDSPHPI 255
Query: 581 GWEEVL 586
+ ++
Sbjct: 256 AVQALI 261
>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
Length = 324
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P++L+ I + L+ + +GN P++L+ G G+GK + L E+ G
Sbjct: 7 IWIEKYRPTTLDDIIGNPEITTRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLARELLG- 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA----ITPEVSNA 462
+ + V+ AS V++ V+E N A + P +
Sbjct: 66 ----THFKSAVIELNASDDRGVDV---------------VRESIKNFAKKSLVLPPNKHK 106
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ EVD E Q ++ IM+ Y+ + + L C IIE +++ C VI+
Sbjct: 107 IVILDEVDSMTEPAQQALRRIMELYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLQDE 166
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+I++ L+ I E+ + + A +LR+A+ L+ A
Sbjct: 167 QILKRLVTICDMENLTYTDEGMEALLFSADGDLRRAVNNLQIVSA 211
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 11/221 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H +L+ + N PH+L G G+GK + +AL ++G A
Sbjct: 38 WVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 97
Query: 408 CWNEKWPTQVLVPVASSAHHVEL-NVNLQANAKYAL---MGLVKEIRDNLAITPEVSNAM 463
+ +++L AS + + ++ A+ L G+ K + P +
Sbjct: 98 LYR----SRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKSYFEKYPCPP---FKI 150
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D + Q ++ M+ Y+ + L C IIE + + C + P
Sbjct: 151 IILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSA 210
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ L QIA+ E+ +L K+ + +LR+AI +++
Sbjct: 211 AGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQS 251
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PHI+I G G GK L H + G+A
Sbjct: 28 WVEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLGEA 87
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 88 -----YKEGVLELNASDERGIDVVRN-----------KIKSFAQRKVTLPPGRHKIIILD 131
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ E+++
Sbjct: 132 EADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKR 191
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L +I E + A + A+ ++R+AI L++
Sbjct: 192 LKEICDMESVKYNDEGLAALIFTAEGDMRQAINNLQS 228
>gi|371943985|gb|AEX61813.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701544|gb|AFX92706.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 364
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 12/226 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L F+ ++ L K G H L G G+GK ++ +A+ EI+
Sbjct: 11 WIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIF--- 67
Query: 408 CWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + T+V+ AS + + + AK + +VK + I P S +I++
Sbjct: 68 --KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKP---DGTIIP--SYKIIIL 120
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D + Q ++ I++ Y+ + + C I +++K+ C I +++
Sbjct: 121 DEADSMTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMID 180
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
L +I+ KE LS + I + ++RKAIM L+ K L Y F
Sbjct: 181 KLKEISTKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYL-YSF 225
>gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM
3091]
gi|110287813|sp|Q2NH89.1|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091]
Length = 321
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 20/218 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + LK V + + P+I+ G +G GK A+AL + G
Sbjct: 5 WVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS A ++ N +++ K +G I I +
Sbjct: 63 ---EYWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGAPFRI--------------IFL 105
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
EVD + Q ++ M+ YT + IL C II+ +++ C + + P I++
Sbjct: 106 DEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIK 165
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L IA +E + + I + ++RK+I L+A
Sbjct: 166 RLKYIASEEGIEAEQSALENIVYFTQGDMRKSINILQA 203
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 32/233 (13%)
Query: 348 WADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P + + H+ E ++L + G+CPH+L G G+GK A+A+ H+++G
Sbjct: 11 WVEKYRPKQVKD-VAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI---TPEVSNA- 462
E + ++VL ELN A+ + + +I+D A+ T + N
Sbjct: 70 ----ELYKSRVL----------ELN----ASDDRGINVVRTKIKDFAAVAVGTNQCKNGY 111
Query: 463 ------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+IV+ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 112 PCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIMEV-LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
P++ EIM ++ I+++E L + ++ + +LR+AI L++ L
Sbjct: 172 K-PLSEEIMSSRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARL 223
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G A
Sbjct: 37 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 96
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS+ +++ + + A K L P+ + +I
Sbjct: 97 MKD-----AVLELNASNDRGIDVVRNKIKMFAQQKVTL--------------PKGRHKII 137
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +I
Sbjct: 138 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQI 197
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
M L ++ KE+ ++ I A+ ++R+A+ L++
Sbjct: 198 MMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQS 237
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 28/235 (11%)
Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
E ++P W +K++P ++ H ++LK+ + + N PH+L G G+GK + +AL
Sbjct: 4 ESIKP-WVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSR 62
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA-ITPEVS 460
+++G Q LV + +ELN + + + +V+E N A P+ S
Sbjct: 63 QLFG----------QDLV----KSRVLELNASDERG-----INVVREKIKNFAKQAPKAS 103
Query: 461 NA-------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ +I++ E D + Q ++ M+ Y+ S + L C IIE V + C
Sbjct: 104 TSASVPAYKIIILDEADSMTQDAQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSK 163
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ P + L IA++E+ L+ + +LR+AI L++ L
Sbjct: 164 FRFKPLDESDSKARLEYIAQEENIPLNEGVIDALIDNTHGDLRQAITYLQSAARL 218
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 108/259 (41%), Gaps = 29/259 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
+ +K++P+ L I H ++ + PH+L G G+GK + +A+ +YG A
Sbjct: 7 FVEKYRPNDLESIISHDEIITTVRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYGKA 66
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
++ +L ELN + + +V+E + T ++ + ++
Sbjct: 67 ----EYKNMIL----------ELNASDDRG-----INVVREQIKSFCSTQQLMSKGIKLV 107
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q+ ++ I++ YT + + C II ++++ C + P T I
Sbjct: 108 ILDECDSMTSSAQFALRRIVEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENI 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL-------NYPFADDQP 577
+ L +IA E+ L A I + ++RK + LE+C N +P
Sbjct: 168 LPKLHEIAELENLRLDQDAAESIVKLSGGDMRKVLNVLESCSLAHKHITLQNVYDVTGRP 227
Query: 578 IPLGWEEVLIELAAEILAD 596
P E + I L + L D
Sbjct: 228 SPYDIENIYISLNNDRLND 246
>gi|154276822|ref|XP_001539256.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150414329|gb|EDN09694.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 354
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + +GN PH++I G G GK + L ++ G++
Sbjct: 30 WVEKYRPVFLDDIVGNTETIERLKIIARNGNMPHVIISGMPGIGKTTSILCLARQMLGNS 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P+ + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPQGRHKLVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ +I++
Sbjct: 134 EADSMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQILKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI E S + A+ ++R+AI L++
Sbjct: 194 LTQICEAEKVKYSEDGLEALIFSAEGDMRQAINNLQS 230
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 110/260 (42%), Gaps = 9/260 (3%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H ++LK+ + N PH+L G G+GK + +AL E+YG
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP- 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E +++L AS + + N +A + + K + +L P +I++
Sbjct: 86 ---ELMKSRILELNASDERGISIVREKVKN--FARLTVSKPSKHDLENYPCPPYKIIILD 140
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + ++ ++
Sbjct: 141 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDR 200
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLI 587
L I+ +E+ +I + +LR+ I L++ D + I E
Sbjct: 201 LRYISEQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVE--- 257
Query: 588 ELAAEILADPSPKRLVMVRG 607
ELA + D K VRG
Sbjct: 258 ELAGVVPHDVLMKITDKVRG 277
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALA 396
A V++ +P W +K++P + + H+ E ++L + +CPH+L G G+GK A
Sbjct: 2 APVLQSSQP-WVEKYRPKQVKD-VAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTA 59
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+A+ H+++G E + ++VL AS + NV +A + + R +
Sbjct: 60 LAIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGSNHRQSGYPC 113
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P S +I++ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 114 P--SFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIM-EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
P++ E+M ++ I +E L + +++ ++ +LR+AI L++ L
Sbjct: 172 -KPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRL 223
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 110/260 (42%), Gaps = 9/260 (3%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H ++LK+ + N PH+L G G+GK + +AL E+YG
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP- 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E +++L AS + + N +A + + K + +L P +I++
Sbjct: 86 ---ELMKSRILELNASDERGISIVREKVKN--FARLTVSKPSKHDLENYPCPPYKIIILD 140
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + ++ ++
Sbjct: 141 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDR 200
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLI 587
L I+ +E+ +I + +LR+ I L++ D + I E
Sbjct: 201 LRYISEQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVE--- 257
Query: 588 ELAAEILADPSPKRLVMVRG 607
ELA + D K VRG
Sbjct: 258 ELAGVVPHDVLMKITDKVRG 277
>gi|238494006|ref|XP_002378239.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
flavus NRRL3357]
gi|220694889|gb|EED51232.1| DNA replication factor C subunit Rfc4, putative [Aspergillus flavus
NRRL3357]
Length = 295
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 90 -----YKEAVLELNASDERGIDVVRN-----------RIKGFAQKKVTLPPGRHKIVILD 133
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 134 EADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQVVKR 193
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L Q+ E + + A + A+ ++R+AI L++
Sbjct: 194 LKQVCDAEKVEHTEDGIAALVFSAEGDMRQAINNLQS 230
>gi|300707136|ref|XP_002995789.1| hypothetical protein NCER_101227 [Nosema ceranae BRL01]
gi|239605004|gb|EEQ82118.1| hypothetical protein NCER_101227 [Nosema ceranae BRL01]
Length = 352
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 138/314 (43%), Gaps = 47/314 (14%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P N H +L++ + N PH++ G+SGSGK+ +A L+ ++G
Sbjct: 2 LWLEKYKPRDFNSMTDHTEIISILQKYNIH-NIPHLIFHGKSGSGKKLIAYNLIKHLFG- 59
Query: 407 ACWNEKWPTQVLVP------VASSAHHVELNVNLQANA-------------KYALMGLVK 447
Q+ VP V + + +E+N L+AN K + ++K
Sbjct: 60 ---------QISVPNVRTSEVKAGSRMIEVNF-LEANEFIEISPSDYNFQDKVIIQSIIK 109
Query: 448 EIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499
E+ + + TP + ++I + Q ++ ++ Y++ ++IL C
Sbjct: 110 EMAQSRPVMSFFSTKKTPSIK--FVIISAAHDLSHEAQAALRRTIEVYSECFRIILICSQ 167
Query: 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKA- 558
IIE +++ C +++ EI + I E+ +++ +I + N+R+A
Sbjct: 168 LSKIIEPIRSRCVFVRIRGFKPQEIKNHIKNIVTAENININEQNIEQIIKISDGNMRRAL 227
Query: 559 ----IMALEACKALNYPF-ADDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLL 613
I+ L+ + +N D + L WE V+ E++A + + ++ VR K+ L+
Sbjct: 228 GLLEILYLKHSEEVNKRLKLDLNHVKLEWEVVMDEISALVRRSHKTETIIEVRKKLYVLI 287
Query: 614 AEFVHPKLILLVMH 627
+ IL+ ++
Sbjct: 288 NSCITAHCILMELY 301
>gi|448537421|ref|XP_003871334.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380355691|emb|CCG25209.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 355
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 103/236 (43%), Gaps = 13/236 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +LN H ++L++ V GN PH+L G G+GK + +AL ++YG
Sbjct: 16 WVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGPN 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ Q +A + + ++L P +I++
Sbjct: 76 L----YKSRVLELNASDERGI--SIVRQKIKNFAKLTVSNPTPEDLKNYPCPPYKIIILD 129
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y + + L C II+ + + C + +
Sbjct: 130 EADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNR 189
Query: 528 LIQIARKEDFDLSMT-----FAAKIATKAKQNLRKAIMALEACKAL--NYPFADDQ 576
L IA +E +L + ++ + +LRKAI L++ L + DDQ
Sbjct: 190 LKYIANEEQLNLDKSQGEDGVLNEVLKISNGDLRKAITYLQSASKLSTSLQLEDDQ 245
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 94/219 (42%), Gaps = 17/219 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN I H +++ V G PH+L+ G G+GK + +A+ E+YG+
Sbjct: 15 WVEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGE- 73
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA--LMGLVKEIRDNLAITPEVSNAMIV 465
+ S+ +ELN + + E +++ I S +I+
Sbjct: 74 --------------SRSSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLII 119
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ IM+ Y + + L C I ++++ C + P ++
Sbjct: 120 LDEADHMTFPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYML 179
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ IA+ E+ +L+ + + ++R+ + L+
Sbjct: 180 NKALDIAKSENVNLTKNGVESLIRVGRGDMRRILNCLQV 218
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 34/249 (13%)
Query: 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
+ K V +L+P W +K++P +++ H +L++ + N PH+L G G+GK +
Sbjct: 15 VPKHTVDPRLQP-WVEKYRPKTIDEVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTS 73
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
+AL +++G + + +VL ELN + + + +V++ N A
Sbjct: 74 TILALARQLFGP----DNFRNRVL----------ELNASDERG-----ISIVRDKIKNFA 114
Query: 455 -ITPEVSNA-------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD 500
TP +I++ E D + Q ++ IM+ Y + L C
Sbjct: 115 RQTPRAQAVASDGKSYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYV 174
Query: 501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM 560
IIE + + C + P + L IA E D + + + + +LR+AI
Sbjct: 175 TRIIEPLASRCSKFRFTPLDSKSSFSRLSYIATAEHIDTNPAVINALISTSSGDLRRAIT 234
Query: 561 ALEACKALN 569
L++ L+
Sbjct: 235 YLQSASRLS 243
>gi|452001809|gb|EMD94268.1| hypothetical protein COCHEDRAFT_1028190 [Cochliobolus
heterostrophus C5]
Length = 1071
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 28/245 (11%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ + Q+L + N PH+L G G+GK + +AL E
Sbjct: 685 RLQP-WVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKE 743
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL-------------------NVNLQANAKYALM 443
+YG E ++VL AS + + NV ++ +
Sbjct: 744 LYGP----ELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEG 799
Query: 444 GLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503
G+V+ RD P +IV+ E D + Q ++ M+ Y+ + L C I
Sbjct: 800 GMVR-YRDKYPCPP---FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRI 855
Query: 504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
I+ + + C + ++ + IA E+ L A ++ A +LRKAI L+
Sbjct: 856 IDPLASRCSKFRFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQ 915
Query: 564 ACKAL 568
+ L
Sbjct: 916 SAARL 920
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 23/223 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + + + PH+L G G+GK + +A+ IYG+
Sbjct: 36 WVEKYRPVTLDDVVSHHDITSTIVKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGN- 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV---SNAMI 464
+ Q+L AS ++ +V+E N A T + +I
Sbjct: 95 ----DYRKQILELNASDDRGID---------------VVREQIKNFAETRTLFAKGFKLI 135
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C II ++++ C + P E+
Sbjct: 136 ILDEADMMTTAAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEV 195
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L + E L+ + +K ++R+A+ L+AC A
Sbjct: 196 EKRLNSVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACHA 238
>gi|390594192|gb|EIN03605.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 364
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 114/274 (41%), Gaps = 37/274 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P ++ H +L++ + N PH+L G G+GK + +AL +++G
Sbjct: 29 WVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP- 87
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA-ITPEVSNA---- 462
+ + ++VL ELN + + + +V+E N A TP
Sbjct: 88 ---DNFRSRVL----------ELNASDERG-----ISIVREKIKNFARQTPRAQAVSSDG 129
Query: 463 ---------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+I++ E D + Q ++ IM+ Y + L C IIE + + C
Sbjct: 130 KTYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSK 189
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
+ P L +A E ++ + + ++ +LR++I L++ L+ +
Sbjct: 190 FRFKPLDPTSTSSRLQHVADAERVPVTPAVLDTLVSASQGDLRRSITYLQSASRLSA--S 247
Query: 574 DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRG 607
D PIP+ + I+ A ++ D K V G
Sbjct: 248 TDPPIPITPTD--IQEIAGVVPDAVVKNFARVLG 279
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H+ ++ + PH+L G G+GK + +A+ +IYG
Sbjct: 25 WVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIYG-- 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
++ VL ELN + + + +V+E + A T V A
Sbjct: 83 ---AQFRNSVL----------ELNASDERG-----IDVVREQIKSFASTKSVFGAKAGFK 124
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+IV+ E D + Q ++ +++ YT + + + C II ++++ C + +P
Sbjct: 125 LIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPD 184
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ L + E +++ + ++ ++R+A+ L+AC A
Sbjct: 185 QVESRLQHVIESEHCNITPGGKEALLKLSRGDMRRALNVLQACHA 229
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 108/237 (45%), Gaps = 27/237 (11%)
Query: 348 WAD---KHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
W D K++P SL+ + H+ +++ + G PH+L+ G G+GK + +AL +Y
Sbjct: 7 WDDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLY 66
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--- 461
G A H +ELN + + +V+E N A+T + +
Sbjct: 67 GP---------------AYRKHILELNASDDRG-----IDVVREQIKNFAMTKVLFSKGF 106
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
++++ E D + Q ++ +++ +T + + + C I ++++ C + P
Sbjct: 107 KLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPE 166
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
EI + ++ +KE +L+ + ++ ++R+A+ L+AC A Y D+ +
Sbjct: 167 KEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACHA-AYDIVDETAV 222
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 31/244 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS + + + L+ + DGN P++++ G G+GK +AL HE+ G
Sbjct: 17 WVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-- 74
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + + A K L P + ++
Sbjct: 75 ---PNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTL--------------PPGRHKVV 117
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y++S + L C IIE +++ C +++ EI
Sbjct: 118 ILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEI 177
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
+ LI + + E I A ++R+A+ L+A + + F + DQ
Sbjct: 178 LGRLIIVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKVCDQ 236
Query: 577 PIPL 580
P PL
Sbjct: 237 PHPL 240
>gi|169609148|ref|XP_001797993.1| hypothetical protein SNOG_07660 [Phaeosphaeria nodorum SN15]
gi|160701791|gb|EAT85126.2| hypothetical protein SNOG_07660 [Phaeosphaeria nodorum SN15]
Length = 216
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 484 MDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF 543
M+ Y+ + +LIL +II +++ +++V P EI VL + +KE + +
Sbjct: 1 MEKYSPNLRLILLANSTSNIIAPIRSRTLLVRVAAPTETEICSVLKNVGKKEGWKEVESL 60
Query: 544 AAKIATKAKQNLRKAIMALEACKALNYPFA--------------DDQPI-PLGWEEVLIE 588
+IA + +NLRKA++ EA A Y F+ D I P WE ++ +
Sbjct: 61 NQRIAKDSGRNLRKALLMFEAVHAQKYVFSIRRHGCCEGTEKITDATHIPPPDWEALIEQ 120
Query: 589 LAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+A +I+ + SP+RL+ VR + LL+ + I+
Sbjct: 121 IARQIVEERSPQRLLQVRASLYDLLSHCIDSTTII 155
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 28/269 (10%)
Query: 320 SKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNC 379
S+SS + T+ K + E W +K++P L+ + + LK + DGN
Sbjct: 3 SRSSSNNKGISATA---KHIDAEGYEMPWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNV 59
Query: 380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAK 439
PHI+I G G GK L H + G+A + VL AS +++ N
Sbjct: 60 PHIIISGMPGIGKTTSIHCLAHALLGEA-----YKEGVLELNASDERGIDVVRN------ 108
Query: 440 YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499
+K P + +I++ E D Q ++ M+ Y+++ + L C
Sbjct: 109 -----KIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNM 163
Query: 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAI 559
IIE +++ C +++ E+++ L +I E + A + A+ ++R+AI
Sbjct: 164 SNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDMESIKYNDEGLAALIFTAEGDMRQAI 223
Query: 560 MALEACKALNYPFAD--------DQPIPL 580
L++ + + F + DQP P+
Sbjct: 224 NNLQSTWS-GFGFVNQDNVFKICDQPHPI 251
>gi|363539784|ref|YP_004894673.1| mg622 gene product [Megavirus chiliensis]
gi|350610949|gb|AEQ32393.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 364
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 12/226 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L F+ ++ L K G H L G G+GK ++ +A+ EI+
Sbjct: 11 WIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIF--- 67
Query: 408 CWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + T+V+ AS + + + AK + +VK + I P S +I++
Sbjct: 68 --KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKP---DGTIIP--SYKIIIL 120
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D + Q ++ I++ Y+ + + C I +++K+ C I +++
Sbjct: 121 DEADSMTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDGCMID 180
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
L +I+ KE LS + I + ++RKAIM L+ K L Y F
Sbjct: 181 KLKEISTKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYL-YSF 225
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 23/244 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ + LKE V GN PH+L G G+GK + +AL E++G
Sbjct: 25 WVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALARELFGPE 84
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
W ++ VL AS + +V K+A + + A+ P +
Sbjct: 85 LWRDR----VLELNASDERGI--DVIRDKVKKFAQISV-------RAVAPGSGKSAPPFK 131
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+IV+ E D + Q ++ I++ YT + + C IIE +++ C + +P
Sbjct: 132 IIVLDEADSMTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLSDE 191
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW 582
L IA E ++ + + +LR AI L+ + +DD+ I +
Sbjct: 192 SQRGRLEYIANCEGVKMANGAMEALLGTSNGDLRSAINTLQMVSSC---LSDDEAITV-- 246
Query: 583 EEVL 586
EE+L
Sbjct: 247 EEIL 250
>gi|170589980|ref|XP_001899751.1| Activator 1 40 kDa subunit [Brugia malayi]
gi|158592877|gb|EDP31473.1| Activator 1 40 kDa subunit, putative [Brugia malayi]
Length = 326
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 22/229 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + Q L GN P+I+I G G GK AL E+ GD
Sbjct: 7 WVEKYRPKMLSEVVGNEFVIQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAREMLGDR 66
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGL------VKEIRDNLAITPEVSN 461
N +ELN + + G+ +K + P +
Sbjct: 67 LKNA---------------CLELNASDDREIFFKFSGIDVVRNKIKTFAQSKVTLPPGRH 111
Query: 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+I++ EVD E Q ++ M+ Y+ + + L C +IE +++ C +++
Sbjct: 112 KIIILDEVDSMTEGAQQALRRTMEIYSKTTRFTLACNQSGKVIEPIQSRCAILRFSKLSE 171
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY 570
+I++ L+QI E + + A+ ++R+A+ L+ C + +
Sbjct: 172 EQIVKRLLQICEAEKVTYDDSGIDALVFTAQGDMRQALNNLQ-CTVVGF 219
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 30/228 (13%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + L+ V + PH++ G +G+GK A A+ E+Y D
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 79 -WRENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYDHR 115
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++++ + IL C II+ +++ C V + +T
Sbjct: 116 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRF-TELTE 174
Query: 523 EIMEVLI-QIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ +E + +IA E +++ + A ++RKAI L+A +
Sbjct: 175 DAIEAQVREIAENEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMG 222
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H + L V + PH++ G +G+GK A A+ E+Y D
Sbjct: 19 WIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYEDD 78
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-----NA 462
W E + +ELN + Q + +RD + S +
Sbjct: 79 -WQENF--------------LELNASDQRG--------IDVVRDRIKDFARSSFGGYDHR 115
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I + E D Q ++ M+ ++ + + IL C II+ +++ C V +
Sbjct: 116 IIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDD 175
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
I + +IA +E +L+ + A ++RK I L+A + +D
Sbjct: 176 AIEAQVREIATEEGIELTDDGVDALVYAADGDMRKGINGLQAAAVMGETVDED 228
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 107/250 (42%), Gaps = 31/250 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ + + + L+ + DGN P++++ G G+GK +AL HE+ G
Sbjct: 15 WVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-- 72
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + + A K L P + ++
Sbjct: 73 ---PNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTL--------------PPGRHKVV 115
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y+++ + L C IIE +++ C +++ EI
Sbjct: 116 ILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEI 175
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
+ L+ + + E I A ++R+A+ L+A + + F + DQ
Sbjct: 176 LGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS-GFRFVNQDNVFKVCDQ 234
Query: 577 PIPLGWEEVL 586
P PL + V+
Sbjct: 235 PHPLHVKNVV 244
>gi|386783685|gb|AFJ24737.1| replication factor C subunit 2, partial [Schmidtea mediterranea]
Length = 341
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 16/216 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + L+ GN P+++I G GSGK + L + G
Sbjct: 24 WLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLG-- 81
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + VL AS+ +E+ N +K N P+ + +I++
Sbjct: 82 ---ETYKNAVLELNASNDRGIEVVRNK-----------IKSFARNKVNLPDGMHKIIILD 127
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D E Q ++ M+ Y+++ + C D IIE +++ C +++ EI+
Sbjct: 128 EGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILAR 187
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
L++I + E + I A+ ++R+AI +E
Sbjct: 188 LLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVE 223
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 101/224 (45%), Gaps = 24/224 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL H+ + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 11 WVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKLYGPQ 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
N + + L A+ + + ++I+D +++ + +
Sbjct: 71 FQN-------------------MILELNASDDRGIDVVRQQIQDFASTQSISFGEKANVK 111
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D + Q+ ++ I++ YT + + L C II ++++ C + P
Sbjct: 112 LIILDEADAMTKDAQFSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQ 171
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566
+ E L + +E D++ + I + ++RKA+ L++ +
Sbjct: 172 HVRERLEFVIDQERLDVTEDGLSAIVRLSNGDMRKALNILQSTQ 215
>gi|448509973|ref|ZP_21615854.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
gi|445696314|gb|ELZ48405.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
Length = 208
Score = 64.7 bits (156), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 26/225 (11%)
Query: 336 QKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL 395
++A R W +K++P +L+ + L+ + + PH+L G +G GK
Sbjct: 6 EQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTA 65
Query: 396 AMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI 455
A A+ EIYG+ W + +ELN + Q + +RD +
Sbjct: 66 ATAIAREIYGEDNWR--------------GNFLELNASDQRG--------IDVVRDRIKG 103
Query: 456 TPEVSNA----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
S ++ + E D + Q ++ M+ ++D+ + IL C II+ +++ C
Sbjct: 104 FARSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRC 163
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR 556
V + P + ++ +IA E+ +++ + A ++R
Sbjct: 164 AVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMR 208
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 13/193 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ LN I H +K V G PH+L+ G G+GK + +A+ E+YGD
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD- 73
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
K + VL AS + NV +A E +++ + + +I++
Sbjct: 74 ----KRSSFVLELNASDDRGI--NVIRDQIKTFA------ESKNHYTTCEKTTLKLIILD 121
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ IM+ Y + + L C I ++++ C + P +
Sbjct: 122 EADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNK 181
Query: 528 LIQIARKEDFDLS 540
+ IA+ E+ +L+
Sbjct: 182 ALDIAKSENVNLT 194
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 112/251 (44%), Gaps = 27/251 (10%)
Query: 322 SSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH 381
SS K D+TS A ++ L P W +K++P++L + H+ ++ + PH
Sbjct: 2 SSKGKGKADDTSASASATDLD-LLP-WVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPH 59
Query: 382 ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA 441
+L G G+GK + +A+ +I+G ++ VL AS +E
Sbjct: 60 LLFYGPPGTGKTSTILAMARKIFG-----PQFRNSVLELNASDDRGIE------------ 102
Query: 442 LMGLVKEIRDNLAITPEVSNA-----MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILC 496
+V+E A T V ++ +IV+ E D + Q ++ +++ YT + + +
Sbjct: 103 ---VVREQIKGFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCII 159
Query: 497 CEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR 556
C II ++++ C + +P ++ + L + E ++ + ++ ++R
Sbjct: 160 CNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVIENEGCKITQDGKEALLKLSRGDMR 219
Query: 557 KAIMALEACKA 567
+A+ L+AC A
Sbjct: 220 RALNVLQACHA 230
>gi|448524726|ref|XP_003869003.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380353356|emb|CCG22866.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 320
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 108/247 (43%), Gaps = 24/247 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK +V DGN P+++I G G GK L +E+ G
Sbjct: 9 WVEKYRPHVLDDIVGNEETIERLKVIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLG-- 66
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + L AS +++ N +K+ P +I++
Sbjct: 67 --KEHYHQATLELNASDDRGIDVVRN-----------KIKQFAQTKISLPPGRTKIIILD 113
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ + E+++
Sbjct: 114 EADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKR 173
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L+ I + E+ + + A+ ++R+AI +++ A + F + DQP P
Sbjct: 174 LLDIIKLENVQYNNEGLQALIFSAEGDMRQAINNMQSTVA-GFGFVNDVNVFKIVDQPHP 232
Query: 580 LGWEEVL 586
L + +L
Sbjct: 233 LVIQNIL 239
>gi|354544379|emb|CCE41102.1| hypothetical protein CPAR2_300910 [Candida parapsilosis]
Length = 357
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 11/226 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +LN H ++L++ V GN PH+L G G+GK + +AL ++YG
Sbjct: 16 WVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGPN 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ Q +A + + ++L P +I++
Sbjct: 76 L----YKSRVLELNASDERGI--SIVRQKIKNFARLTVSNPTPEDLKNYPCPPYKIIILD 129
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y + + L C II+ + + C + + +
Sbjct: 130 EADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNSENSLNR 189
Query: 528 LIQIARKEDFDLSMT-----FAAKIATKAKQNLRKAIMALEACKAL 568
L IA +E +L + ++ + +LRKAI L++ L
Sbjct: 190 LKYIANEEHLNLDKSQGEDAVLNEVLRISNGDLRKAITYLQSASKL 235
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 6/221 (2%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ H +L+ + N PH+L G G+GK + +AL E+YG
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP- 93
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E T+VL AS + + N +A M L + P +I++
Sbjct: 94 ---ELIKTRVLELNASDERGISIVREKVKN--FARMQLTNPTAEYKKRYPCPPFKIIILD 148
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+ + L C II+ + + C +
Sbjct: 149 EADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRR 208
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
L +IA+ E +L + ++ +LRKAI L++ L
Sbjct: 209 LEEIAKNEGVELEEGAVDALIKCSEGDLRKAITFLQSAARL 249
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 19/261 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P++L+ H+ + V PH+L+ G G+GK + +AL IYG
Sbjct: 47 WVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYG-- 104
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYAL-MGLVKEIRDNLAITPEVSNAM 463
++ VL AS +++ + A+ K M + +LA S +
Sbjct: 105 --SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLA-----SFKL 157
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D Q ++ IM+ YT + + + + ++ + C + P +
Sbjct: 158 IILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQD 217
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF-----ADDQPI 578
I ++ Q+ KED + + T ++ ++R+A+ L+AC A + P DQ +
Sbjct: 218 IRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAV 277
Query: 579 PLGWEEVLIELAAEILADPSP 599
P E + E + +A P P
Sbjct: 278 P-EPETITNETIYDCIAAPHP 297
>gi|389751171|gb|EIM92244.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 343
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 30/263 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ L+ + + LK + DGN PH++I G G GK L H++ GDA
Sbjct: 24 WVEKYRPNILDDVVGNSDTIDRLKVIARDGNVPHLIISGMPGIGKTTSIHCLAHQLLGDA 83
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 84 -----YKEGVLELNASDERGIDVVRN-----------KIKAFAQKKVTLPPGRHKIVILD 127
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ ++++ + L C IIE +++ C +++ EI++
Sbjct: 128 EADSMTAGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDAEILKR 187
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQPIPL 580
L++I E + + + ++ ++R+AI L++ + +D DQP P+
Sbjct: 188 LLEICDIEKVEYNDDGLTALIFTSEGDMRQAINNLQSTWSGFGFVSSDNVFKVCDQPHPI 247
Query: 581 GWEEVL-------IELAAEILAD 596
+ ++ ++LA E L++
Sbjct: 248 IVQTIIRACMKSNVDLAMEKLSE 270
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 16/258 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W ++++P +L+ H +LK+ + N PH+L G G+GK + +AL E+YG
Sbjct: 27 WVERYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP- 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E +++L AS + + N +A + + K + +L P +I++
Sbjct: 86 ---ELMKSRILELNASDERGISIVREKVKN--FARLTVSKPSKHDLENYPCPPYKIIILD 140
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + + ++
Sbjct: 141 EADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKALDANNAIDR 200
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYPFADDQPIPLGWEEVL 586
L I+ +E+ +I + +LR+ I L+ A K Y LG + +
Sbjct: 201 LRYISEQENVKCDAGVLERILDISAGDLRRGITLLQSASKRAQY---------LGDGKNI 251
Query: 587 IELAAEILADPSPKRLVM 604
E LA PK ++M
Sbjct: 252 TSTQVEELAGVVPKEVLM 269
>gi|403416153|emb|CCM02853.1| predicted protein [Fibroporia radiculosa]
Length = 371
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 6/226 (2%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +++ H +L+ + N PH+L G GSGK + +AL +
Sbjct: 20 ELQP-WVEKYRPKTIDDISAQEHTVAVLRRTLTSTNLPHMLFYGPPGSGKTSTILALSRQ 78
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA 462
++G + + ++VL AS + + + N + + + P
Sbjct: 79 LFGP----DNFRSRVLELNASDERGIAIVRDKIKNFARQ-TPRAQAVSSDGKTYPCPPYK 133
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+I++ E D + Q ++ IM+ Y + L C IIE + + C + P +
Sbjct: 134 IIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDST 193
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
L QIA +E ++ + + + +LR++I L++ L
Sbjct: 194 STSSRLSQIALEEHISVTDEVVSTLINTSHGDLRRSITYLQSASRL 239
>gi|290559904|gb|EFD93226.1| replication factor C small subunit [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 313
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P S + I + + LK + H+++ G G GK A+ L E++G
Sbjct: 3 LWVEKYRPQSFDEVIGQKDIVEKLKAMSSKKEIQHMILSGPPGVGKTTCAVVLAKEVFG- 61
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--AMI 464
+ WN+ + +ELN + + G VKE A T + + +I
Sbjct: 62 STWNQ--------------NFIELNAS-DDRKLSVIQGKVKE----FARTKPIDSPFKII 102
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D + Q ++ +M+ Y+ +C+ + +IIE +++ C +++ P ++
Sbjct: 103 LFDEADSLTQEAQQALRRMMEEYSSTCRFLFSVNYQSNIIEPLQSRCAILRFQPLSKTDV 162
Query: 525 MEVLIQIARKEDFDL 539
+ + +IA KE ++
Sbjct: 163 TKFIDRIAEKEKLEI 177
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 96/220 (43%), Gaps = 23/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ + +K + PH+L G G+GK MA+ +YG +
Sbjct: 23 WVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLYGSS 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
H + + L A+ + +V+E A T ++ + ++
Sbjct: 83 -------------------HSSMVLELNASDDRGI-NVVREQIKVFAGTKKLFHTGVKLV 122
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q+ ++ I++ Y+ + + L C +II +V++ C + P I
Sbjct: 123 ILDEADNMTNAAQFALRRIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLI 182
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L+ I R+E+ + A + ++ ++R+ I L+A
Sbjct: 183 RSRLLYILRQENVEFDDDGVAALLALSRGDMRRVINVLQA 222
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P++L+ + H+ ++ + PH+L G G+GK + +A+ +I+G
Sbjct: 25 WVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFG-- 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
++ VL AS +E +V+E + A T V ++
Sbjct: 83 ---PQFRNSVLELNASDDRGIE---------------VVREQIKSFASTKSVFSSKGGFK 124
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+IV+ E D + Q ++ +++ YT + + + C II ++++ C + +P
Sbjct: 125 LIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELD 184
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ + L + E ++ + ++ ++R+A+ L+AC A
Sbjct: 185 QVEDRLNHVIDTEGCKITQDGKEALLKLSRGDMRRALNVLQACHA 229
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H+ +++ + PH+L G G+GK + +A+ IYG
Sbjct: 42 WVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-- 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV---SNAMI 464
+ + Q+L AS ++ +V+E N A T + +I
Sbjct: 100 ---KDYRKQILELNASDDRGID---------------VVREQIKNFAETRTLFSKGYKLI 141
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C II +V++ C + P E+
Sbjct: 142 ILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEV 201
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ + E ++ + +K ++R+A+ L+AC A
Sbjct: 202 ERRINGVIETEGVKITGDGRKALLKLSKGDMRRALNVLQACHA 244
>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
Length = 418
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 25/243 (10%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ + Q+L + N PH+L G G+GK + +AL E
Sbjct: 31 RLQP-WVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKE 89
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL-----------------NVNLQANAKYALMGL 445
+YG E ++VL AS + + N N+ K +
Sbjct: 90 LYG----PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGEAK 145
Query: 446 VKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
RD P +IV+ E D + Q ++ M+ Y+ + L C II+
Sbjct: 146 TVRYRDKYPCPP---FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIID 202
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ + C + ++ + IA+ E+ L A ++ A +LRKAI L++
Sbjct: 203 PLASRCSKFRFKSLDQGNAVKRVSDIAKLENVSLEDDVAEELVRVADGDLRKAITFLQSA 262
Query: 566 KAL 568
L
Sbjct: 263 ARL 265
>gi|47213597|emb|CAG07263.1| unnamed protein product [Tetraodon nigroviridis]
Length = 350
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 22/221 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKR----ALAMALLHEI 403
W +K++P L+ + + L+ +GN P+I+I G G+GK LA ALL
Sbjct: 32 WVEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGAS 91
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
DA VL AS+ H ++V + +K P+ + +
Sbjct: 92 MKDA---------VLELNASNDRHRGIDV---------VRNKIKMFAQQKVTLPKGRHKI 133
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D + Q ++ IM+ Y+ + + L C IIE +++ C V++ +
Sbjct: 134 IILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQ 193
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
I+ L + KE +S + A+ ++R+A+ L++
Sbjct: 194 ILARLQDVVEKEGLSVSEDGLEAVIFTAQGDMRQALNNLQS 234
>gi|390371040|dbj|GAB64921.1| replication factor C subunit 2 [Plasmodium cynomolgi strain B]
Length = 342
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 16/227 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + +LKE+V N PH++ G G+GK + AL HE++G
Sbjct: 18 WVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGRD 77
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
+E+ VL AS + NV + Y + + K I E +
Sbjct: 78 NISER----VLELNASDDRGI--NVVREKIKAYTRISISKN-----KINSETNETLPPWK 126
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++V+ E D E Q ++ I++ Y++ + IL C I + + + C + +
Sbjct: 127 LVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPIN 186
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E L+ I + E ++ KI + +LR+A+ L+ C ++
Sbjct: 187 IKKEKLLYICKSEGINILDDALGKIIETTQGDLRRAVSILQLCSCID 233
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 121/275 (44%), Gaps = 18/275 (6%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ H +LK+ + N PH+L G G+GK + +AL E++G
Sbjct: 27 WVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKELFGP- 85
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E T+VL AS + + N +A + + K + +L +I++
Sbjct: 86 ---ELMKTRVLELNASDERGISIVREKVKN--FARLTVSKPSKHDLENYLCPPYKIIILD 140
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + L C II+ + + C + + ++
Sbjct: 141 EADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLDSSNALQR 200
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE-ACKALNYPFADDQPIPLGWEEVL 586
L +A +E + I + +LR+AI L+ A K + Y D+ +E++
Sbjct: 201 LKYVAEEEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYSGEDEVS-----KELV 255
Query: 587 IELAAEILADPSPKRLVMVRG-----KIQKLLAEF 616
ELAA ++ + S K++V + KI + + EF
Sbjct: 256 EELAA-VVPESSIKQIVELVATRDFNKISEYIQEF 289
>gi|440291261|gb|ELP84530.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 18/222 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + ++ + LK PH+L+ GQ G GK L E+ D
Sbjct: 21 WVEKYRPKVLEDVVGNKDVIETLKSFRSSKQFPHLLLCGQPGIGKTTSIHCLARELLKD- 79
Query: 408 CWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
K+ VL AS ++ + ++A + +M + DN+ P+V +++
Sbjct: 80 ----KYKEAVLELNASDERGIDTIRTTIKAFCEKKVM-----LPDNI---PKV----VIL 123
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D ++ M+ ++ + + +L C +IE +++ C + P T E++
Sbjct: 124 DEADSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKVIEPIQSRCSRLNFRPLSTDEVIN 183
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +IAR E +++ I ++ +LRKA+ AL+ C L
Sbjct: 184 RITKIARLESMNIADDAIKAIEIISEGDLRKAVNALQTCAVL 225
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 19/231 (8%)
Query: 339 VVIEKLRPF--WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALA 396
+VI+K R W +K++PSSL+ +++ V +G PH+L G G+GK +
Sbjct: 1 MVIQKNRENLPWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTI 60
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+AL EIYG + VL AS +++ N +KE + I
Sbjct: 61 IALAKEIYG-----SNYRNMVLELNASDDRGIDVVRN-----------QIKEFASTMQIF 104
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ +I++ E D Q ++ I++ YT + + + + ++ + C +
Sbjct: 105 SK-GFKLIILDEADAMTSTAQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRF 163
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
P + + + KE +S + T A+ ++RKA+ L+ACKA
Sbjct: 164 SPISQEAVNTTIATVITKEKLKISSDAIESLCTLARGDMRKALNVLQACKA 214
>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 364
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 10/229 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ H ++L + + GN PH+L G G+GK + +AL E+YG
Sbjct: 27 WVEKYRPKSLSDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGPN 86
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ + +A + + +++LA P +I++
Sbjct: 87 LYK----SRVLELNASDERGI--SIVREKIKNFARLTISNPTKEDLANYPCPPYKIIILD 140
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y + +L C II+ + + C +
Sbjct: 141 EADSMTYDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLR 200
Query: 528 LIQIARKED--FDLSM--TFAAKIATKAKQNLRKAIMALEACKALNYPF 572
L I ++E+ FD ++ + +LRKAI L++ L+ F
Sbjct: 201 LKYIGQQENLRFDKGQEDQVIQELLKISGGDLRKAITYLQSAAKLSETF 249
>gi|430814613|emb|CCJ28174.1| unnamed protein product [Pneumocystis jirovecii]
Length = 967
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 30/236 (12%)
Query: 342 EKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
EK+ P W +K++P +L+ H +LK+ + N PH+L G G+GK + +AL +
Sbjct: 17 EKMIP-WVEKYRPQTLDQVAFQDHAISVLKKSLQSMNLPHLLFYGSPGTGKTSTILALAN 75
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
E++G E ++VL ELN + + + +++E N A VSN
Sbjct: 76 ELFG----MELMKSRVL----------ELNASDERG-----ISIIREKVKNFARIA-VSN 115
Query: 462 A---------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
+ +I++ E D + Q ++ M+ Y+ + L C II + + C
Sbjct: 116 SSEHSCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYITRIIGPLASRCS 175
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ P ME L IA E+ + ++ +LRKAI L++ L
Sbjct: 176 KFQFKPLSFQHSMEKLKYIASCENVKYDKGVIEMLIEQSNGDLRKAITFLQSAARL 231
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 123/282 (43%), Gaps = 32/282 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K +P SL HR + +L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 42 WVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
++ H++ L +N A+ + + ++I+D + + + S
Sbjct: 100 ---------------TNYHNMILELN--ASDDRGIDVVRQQIQDFASTQSFSFGAKASVK 142
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D + Q+ ++ +++ YT + + L C II ++++ C + P
Sbjct: 143 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNF 202
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD------- 575
+ E L + E D++ A + ++RKA+ L++ + ++
Sbjct: 203 HVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTG 262
Query: 576 QPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFV 617
P+P E++ L E +D S KR+ ++ + L + V
Sbjct: 263 NPMPKDIEQISFWLLNEPFSD-SFKRISEIKTRKGLALVDIV 303
>gi|451854539|gb|EMD67832.1| hypothetical protein COCSADRAFT_112005 [Cochliobolus sativus
ND90Pr]
Length = 394
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 12/229 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
+ +K++P+SL+ H+ + + V PH+L+ G G+GK + +AL IYG
Sbjct: 45 YVVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG- 103
Query: 407 ACWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
N+ VL AS +E+ + ++ K K +LA + +
Sbjct: 104 ---NKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKTGDSSLA-----TFKL 155
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D Q ++ IM+ YT + + + + ++ + C + P +
Sbjct: 156 IILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQD 215
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
I ++ ++ +E +++ + T +K ++R+A+ L+AC A + P
Sbjct: 216 IRHLVDKVIEEEKVNITQDATDSLVTLSKGDMRRALNVLQACHASSTPL 264
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 33/235 (14%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P ++ H +L++ + N PH+L G G+GK + +AL +++G
Sbjct: 26 WVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP- 84
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA------------- 454
E + ++VL ELN + + + +V+E N A
Sbjct: 85 ---ENFRSRVL----------ELNASDERG-----ISIVREKIKNFARQTPRAQAVSADG 126
Query: 455 -ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
+ P +I++ E D + Q ++ IM+ Y + L C IIE + + C
Sbjct: 127 TVYPCPPYKIIILDEADSMTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSK 186
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ P + Q+A E+ ++ + + ++ +LR+AI L++ L
Sbjct: 187 FRFKPLDPASTSARIAQVASAENVPVTPETVDALISTSQGDLRRAITYLQSASRL 241
>gi|350636056|gb|EHA24416.1| hypothetical protein ASPNIDRAFT_40316 [Aspergillus niger ATCC 1015]
Length = 342
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 32/220 (14%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ GDA
Sbjct: 30 WVEKYRPVYLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGDA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQ---ANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL ELN + + A K L P + ++
Sbjct: 90 -----YKEAVL----------ELNASDERGFAQKKVTL--------------PPGRHKLV 120
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y+ + + C IIE +++ C +++ +I
Sbjct: 121 ILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQI 180
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
++ L Q+ E + + A + A+ ++R+AI L++
Sbjct: 181 VKRLKQVCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQS 220
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 105/249 (42%), Gaps = 23/249 (9%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
RP W ++++P ++ + + L+ + +GN P++++ G G+GK M L +
Sbjct: 17 RP-WVERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSGPPGTGKTTSIMCLARSLL 75
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
G + E VL AS +++ N +K+ P + ++
Sbjct: 76 GKEVYKEA----VLELNASDERTLDVVRNK-----------IKQFAQKKVNLPPNRHKIV 120
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ IM+ Y+ + + L C D IIE +++ C +++ E+
Sbjct: 121 ILDEADSMTSAAQQAMRRIMEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRLTDAEL 180
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA-------CKALNYPFADDQP 577
+ LI I E + I + ++R AI +L+A A N DQP
Sbjct: 181 LTRLIVICELEHVQKTEDGLESILYTSDGDMRNAINSLQATYQGFGIVNATNVFKVCDQP 240
Query: 578 IPLGWEEVL 586
P+ + ++
Sbjct: 241 HPVAIQTII 249
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 108/256 (42%), Gaps = 36/256 (14%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
L+P W +K++P +++ H +L+ + N PH+L G G+GK + +AL ++
Sbjct: 21 LQP-WVEKYRPKTIDDVSAQEHTVAVLRRTLTSTNLPHMLFYGPPGTGKTSTILALARQL 79
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE-IRDNLAITPEVSNA 462
+G + + ++VL ELN + + + +V+E I+D TP A
Sbjct: 80 FG----PDNFRSRVL----------ELNASDERG-----ISIVREKIKDFARQTPRAQAA 120
Query: 463 -------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509
+I++ E D + Q ++ IM+ Y + L C IIE + +
Sbjct: 121 SSDDKTYPCPPYKIIILDEADSMTQDAQAALRRIMENYVRITRFCLVCNYVTRIIEPLAS 180
Query: 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
C + P L IA E+ + + + + +LR++I L++ L
Sbjct: 181 RCSKFRFKPLDNASTSARLAAIASAENIHIPDSVIDTLINTSHGDLRRSITYLQSASRLA 240
Query: 570 YPFADDQPIPLGWEEV 585
+ D P P+ ++
Sbjct: 241 N--STDPPAPITSADI 254
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 7/226 (3%)
Query: 345 RPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
RP W +K++P +L+ H +L+ + N PH+L G G+GK + +AL E+
Sbjct: 33 RPVPWVEKYRPKTLSDVTAQDHTVSVLRRTLQSSNLPHMLFYGPPGTGKTSTILALAKEL 92
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM 463
YG E T+VL AS + + N +A + + N + P +
Sbjct: 93 YG----PELMKTRVLELNASDERGISIVREKVKN--FAKIAVSTTTAANASKYPCPPYKI 146
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D Q ++ M+ Y+ + L C II+ + + C + P
Sbjct: 147 IILDEADSMTHDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEGN 206
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L IA E + A +LRKAI L++ L+
Sbjct: 207 TRLRLSSIAEAEGVKYQEGVVDTLIKVADGDLRKAITFLQSAAKLH 252
>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
reilianum SRZ2]
Length = 385
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 34/245 (13%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
+RP W +K++P +++ H +LK+ ++ N PH+L G G+GK + +AL ++
Sbjct: 28 MRP-WVEKYRPKTIDDVAAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQL 86
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDN---LAIT---- 456
+G E T+VL ELN + + + +V+E N LA+T
Sbjct: 87 FG----PELMKTRVL----------ELNASDERG-----ISVVREKIKNFAKLAVTNPKE 127
Query: 457 --PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P +I++ E D + Q ++ IM+ Y+ + L C IIE + + C
Sbjct: 128 GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKF 187
Query: 515 K---VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
+ +D T +E +I A F S I+T + +LR+AI L++ L+
Sbjct: 188 RFRSLDTSSTKTRLE-MIASAESVSFQDSTVLDTLIST-SDGDLRRAITYLQSASRLHSI 245
Query: 572 FADDQ 576
D++
Sbjct: 246 AGDEK 250
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 105/230 (45%), Gaps = 24/230 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P + ++L+ ++ GN PH+L G G+GK + A+AL+ E++G
Sbjct: 33 WVEKYRPRRVEDMAHQVEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFG-- 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA---ITPEVSNAM- 463
E+ ++L ELN + K + + + N+A I PE M
Sbjct: 91 --REEAKNRLL----------ELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGREMP 138
Query: 464 ----IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+++ E D + Q ++ IM+ ++ + + I+ C II+ + + C + + P
Sbjct: 139 TWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFE-P 197
Query: 520 VTHEIMEVLIQ-IARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
V + E I+ I E ++ + ++ +LR+A+ L++ ++
Sbjct: 198 VARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASI 247
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 25/241 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + DGN PHI+I G G GK L H + G+A
Sbjct: 28 WVEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLGEA 87
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 88 -----YKEGVLELNASDERGIDVVRN-----------KIKSFAQRKVTLPPGRHKIIILD 131
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ E+++
Sbjct: 132 EADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKR 191
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L +I E + A + A+ ++R+AI L++ + + F + DQP P
Sbjct: 192 LKEICDMESIKHNDEGLAALIFTAEGDMRQAINNLQSTWS-GFGFVNQDNVFKICDQPHP 250
Query: 580 L 580
+
Sbjct: 251 I 251
>gi|407043595|gb|EKE42035.1| activator 1 subunit, putative [Entamoeba nuttalli P19]
Length = 331
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 22/222 (9%)
Query: 351 KHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACW 409
K+QP S +CH E +LL + +GN PH++I G +GSG+ M L EIYG
Sbjct: 10 KYQPRSFAK-LCHWTETTELLYNISQNGNPPHLVIHGTNGSGRYTCCMLFLKEIYGSVVL 68
Query: 410 ---NEKWPT----QVLVPVASSAHHVELNVNLQANAKYALMGLV--KEIRDNLAITPEVS 460
EK+ ++++ V S HVE N ++Y L + + I D + + +
Sbjct: 69 ELGQEKYEIDEEHEIVLKV--SPFHVEFN-----PSQYGLRDRITLQFIIDKMKVGSQ-- 119
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++I+E DK + Q+ ++ M+ T + + I E+ +++ +++ C I+++ P
Sbjct: 120 QKTLIIHEADKLTKEAQFAVRRAME--TGNWRYIFITENISSMMKPLRSRCLDIRIELPT 177
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562
E+ ++ I ++E ++ I NLR ++ L
Sbjct: 178 YDEVDRLITNICQQEHTHITQKDKEMILNSNNGNLRTTLITL 219
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 338 AVVIEKLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALA 396
A V++ +P W +K++P + + H+ E ++L + +CPH+L G G+GK A
Sbjct: 2 APVLQSSQP-WVEKYRPKQVKD-VAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTA 59
Query: 397 MALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT 456
+A+ H+++G E + ++VL AS + NV +A + + R +
Sbjct: 60 LAIAHQLFGP----ELYKSRVLELNASDDRGI--NVVRTKIKDFAAVAVGSNHRQSGYPC 113
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
P S +I++ E D E Q ++ M+ Y+ + C IIE + + C +
Sbjct: 114 P--SFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 171
Query: 517 DPPVTHEIM-EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
P++ E+M ++ I +E L + +++ ++ +LR+AI L++ L
Sbjct: 172 -KPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRL 223
>gi|344231186|gb|EGV63068.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 325
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 107/246 (43%), Gaps = 22/246 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK L E+ G
Sbjct: 13 WVEKYRPHKLDNIVGNEETVERLKLIANDGNMPHMIISGLPGIGKTTSIHCLALELLGP- 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E + + L AS +++ N +K+ P + +I++
Sbjct: 72 ---ELYKSATLELNASDDRGIDVVRN-----------RIKQFAQTKIQLPPGRHKIIILD 117
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ + +++
Sbjct: 118 EADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTR 177
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-------LNYPFADDQPIPL 580
L+++ + E+ + + A+ ++R+AI L++ A +N DQP PL
Sbjct: 178 LLEVCKLENVQFNTEGLQALIFTAEGDMRQAINNLQSTVAGFGMVNDVNVFKIVDQPHPL 237
Query: 581 GWEEVL 586
++L
Sbjct: 238 VIRKML 243
>gi|451849989|gb|EMD63292.1| hypothetical protein COCSADRAFT_38154 [Cochliobolus sativus ND90Pr]
Length = 416
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 28/245 (11%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ + Q+L + N PH+L G G+GK + +AL E
Sbjct: 31 RLQP-WVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKE 89
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL-------------------NVNLQANAKYALM 443
+YG E ++VL AS + + NV ++ +
Sbjct: 90 LYGP----ELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEG 145
Query: 444 GLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503
G+V+ RD P +IV+ E D + Q ++ M+ Y+ + L C I
Sbjct: 146 GMVR-YRDKYPCPP---FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRI 201
Query: 504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
I+ + + C + ++ + IA E+ L A ++ A +LRKAI L+
Sbjct: 202 IDPLASRCSKFRFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQ 261
Query: 564 ACKAL 568
+ L
Sbjct: 262 SAARL 266
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H +++ + PH+L G G+GK + +A+ IYG
Sbjct: 37 WVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-- 94
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV---SNAMI 464
++ Q+L AS +E +V+E N A T + +I
Sbjct: 95 ---TEYRKQILELNASDDRGIE---------------VVREQIKNFAETRTLFSKGYKLI 136
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ +++ YT + + + C II ++++ C + P E+
Sbjct: 137 ILDEADMMTTAAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEV 196
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ + + E ++ + +K ++R+A+ L+AC A
Sbjct: 197 EKRVNNVIDAEGVKITAEGKQALLKLSKGDMRRALNVLQACHA 239
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 103/225 (45%), Gaps = 25/225 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P++L+ + H+ ++ + PH+L G G+GK + +A+ +I+G
Sbjct: 24 WVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFG-- 81
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
++ VL AS ++ +V+E + A T V ++
Sbjct: 82 ---PQFRNSVLELNASDDRGID---------------VVREQIKSFASTKSVFSSKGGFK 123
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
+IV+ E D + Q ++ +++ YT + + + C II ++++ C + +P
Sbjct: 124 LIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELD 183
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
++ + L + E +++ + ++ ++R+A+ L+AC A
Sbjct: 184 QVEDRLNHVIESEGCNITQDGKEALLKLSRGDMRRALNVLQACHA 228
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + + L+ +GN P+I+I G G+GK + L + G A
Sbjct: 37 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 96
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS+ +++ + + A K L P+ + +I
Sbjct: 97 MKD-----AVLELNASNDRGIDVVRNKIKMFAQQKVTL--------------PKGRHKII 137
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ M+ Y+ + + L C IIE +++ C V++ +I
Sbjct: 138 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLRDEQI 197
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
M L+++ +E+ S I A+ ++R+A+ L++
Sbjct: 198 MMRLLEVVERENLVTSNDGLEAIIFTAQGDMRQALNNLQS 237
>gi|403221343|dbj|BAM39476.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 336
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 21/229 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ I ++++++ N PH++ G G+GK + A+A+ +IYG
Sbjct: 9 WVEKYRPKKLSDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGLE 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAM---- 463
E+ ++ + +S ++V Y + + N I PE + M
Sbjct: 69 GMRER-----VLELNASDERGRIDVVRDRIKTYTRINI-----SNNKINPETNRVMPNYK 118
Query: 464 -IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
I++ E D Q ++ +++ Y+ + IL C II + + C V P T
Sbjct: 119 IIILDEADMITADAQAALRRVIENYSGISRFILICNYLHKIIGPIYSRCSVFHFKPIDTS 178
Query: 523 EIMEVLIQIARKEDFDL---SMTFAAKIATKAKQNLRKAIMALEACKAL 568
++ L I KE ++ F K+++ ++RK I L++ +L
Sbjct: 179 SQVKRLEYICSKEGIKYDTKALEFLTKVSSG---DMRKGITILQSTASL 224
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L + + + LK++ DGN PH++I G G GK L HE+ G
Sbjct: 12 WVEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVHCLAHELLGS- 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 71 ----HYSQAVLELNASDDRGIDVIRN-----------QIKHFAQKKLNLPVGKHKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 116 EADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+++ E + + I A+ ++R+AI L++ A
Sbjct: 176 LLEVIELEKVEYTNDGLEAIIFTAEGDMRQAINNLQSTVA 215
>gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
Length = 362
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 111/249 (44%), Gaps = 29/249 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+ L + + L+ GN P+I+I G G GK + L + G A
Sbjct: 44 WVEKYRPAKLCDVVGNEDTVSRLEVFSQQGNMPNIIIAGSPGIGKTTSILCLARTLLGPA 103
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS+ +++ + + A K L P+ + +I
Sbjct: 104 -----YKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL--------------PKGRHKII 144
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ M+ Y+ + + L C IIE++++ C V++ ++I
Sbjct: 145 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEAIQSRCAVLRYSKLTDNQI 204
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC-KALNYPFAD------DQP 577
+E L+ + KE+ + + + A+ ++R+A+ L++ Y ++ D+P
Sbjct: 205 LERLLYVCEKENVEHTDDGLEAVIFTAQGDMRQALNNLQSTWSGFGYVNSENVFKVCDEP 264
Query: 578 IPLGWEEVL 586
PL +E+L
Sbjct: 265 HPLLVKEML 273
>gi|190360157|sp|P0C7N7.1|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2
Length = 411
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 25/243 (10%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ + Q+L + N PH+L G G+GK + +AL +
Sbjct: 31 RLQP-WVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQ 89
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL---------NVNLQANAKYALM------GLVK 447
+YG E ++VL AS + + L Y +M G K
Sbjct: 90 LYG----PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAK 145
Query: 448 EI--RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
+ RD + P +IV+ E D + Q ++ M+ Y+ + L C II+
Sbjct: 146 MVRYRDKYSCPP---FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIID 202
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ + C + + + IA+ ED L + ++ A +LRKAI L++
Sbjct: 203 PLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSA 262
Query: 566 KAL 568
L
Sbjct: 263 ARL 265
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 27/248 (10%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL+P W +K++P +++ + +L++ ++ N PH+L G G+GK + +AL +
Sbjct: 16 KLQP-WVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQ 74
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN- 461
++G + + +ELN + + + R+ P V++
Sbjct: 75 LFGPDLFKSRV--------------LELNASDERGISVVREKIKTFARETPRHNPGVASD 120
Query: 462 ---------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
+I++ E D + Q ++ IM+ Y+ + L C IIE V + C
Sbjct: 121 GKEYPCPPYKLIILDEADSMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCS 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+ P + IA E I A +LRKAI L+ + L+
Sbjct: 181 KFRFRPLEQSSSQARMEMIAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQ-- 238
Query: 573 ADDQPIPL 580
A D P P+
Sbjct: 239 ASDPPTPI 246
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 24/222 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL HR + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 40 WVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
N + + L A+ + + + ++I+D +L+ + S
Sbjct: 100 YGN-------------------MILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVK 140
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
M+++ E D + Q+ ++ +++ +T S + L C II ++++ C + P
Sbjct: 141 MVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGT 200
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ E L I + E D+ + + ++RKA+ L++
Sbjct: 201 HVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQS 242
>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 417
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 25/243 (10%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ + Q+L + N PH+L G G+GK + +AL E
Sbjct: 31 RLQP-WVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKE 89
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL-----------------NVNLQANAKYALMGL 445
+YG E ++VL AS + + N N+ K +
Sbjct: 90 LYGP----ELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGETK 145
Query: 446 VKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
RD P +IV+ E D + Q ++ M+ Y+ + L C II+
Sbjct: 146 TVRYRDKYPCPP---FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIID 202
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ + C + ++ + IA+ E+ L A ++ A +LRKAI L++
Sbjct: 203 PLASRCSKFRFKSLDQGNAIKRVSDIAKLENVSLEDGVAEELVRVADGDLRKAITFLQSA 262
Query: 566 KAL 568
L
Sbjct: 263 ARL 265
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 15/231 (6%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P SL+ H +L+ + N PH+L G G+GK + +AL +
Sbjct: 33 RLQP-WVEKYRPRSLDDIAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQ 91
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGL-----VKEIRDNLAITP 457
+YG E ++VL AS + ++ + +A M L +E R P
Sbjct: 92 LYG----PELVKSRVLELNASDERGI--SIVREKVKDFARMQLSNPPHAEEYRKKYPCPP 145
Query: 458 EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVD 517
+I++ E D + Q ++ M+ Y+ + L C II+ + + C +
Sbjct: 146 ---YKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFK 202
Query: 518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ + IAR E+ L + ++ +LRKAI L++ L
Sbjct: 203 SLDEGNAGKRIEDIARLENVKLDEGVVETLLRCSEGDLRKAITFLQSAARL 253
>gi|66359084|ref|XP_626720.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
II]
gi|46228380|gb|EAK89279.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
II]
Length = 339
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 16/231 (6%)
Query: 334 FIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKR 393
++ ++E W +K++P L+ + + LK L GN P++L+ G G+GK
Sbjct: 4 LVKSKQILEMSTQIWIEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNLLLSGPPGTGKT 63
Query: 394 ALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNL 453
L E+ G K+ VL AS +++ + + +E D
Sbjct: 64 TSIHCLASEMLG-----SKYGRAVLELNASDDRGIDV-------VRDKIKSFAREKID-- 109
Query: 454 AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
PE + ++++ EVD + Q ++ +M+ Y++S + L C IIE +++ C +
Sbjct: 110 --LPEGRHKIVILDEVDSMTDSAQQALRRLMEVYSESTRFALACNQSTKIIEPIQSRCAI 167
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
I+ +I + L +I + E+ + + A ++R I L+A
Sbjct: 168 IRYSKLTDAQIRKRLFEIIKMENIPYVDSGIDTLVFTADGDMRIVINNLQA 218
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 11/233 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PSSL+ H+ + V PH+L+ G G+GK + +AL IYG
Sbjct: 43 WVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARRIYG-- 100
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ V Q + + A +P +I++
Sbjct: 101 --TKNMRQMVLELNASDDRGIDV-VREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILD 157
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ IM+ YT + + + + ++ + C + P +I +
Sbjct: 158 EADAMTSTAQMALRRIMERYTSNTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTL 217
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
+ ++ E + + T +K ++R+A+ L+AC FA P+P+
Sbjct: 218 VDKVIENEGVRMQPDAVDSLVTLSKGDMRRALNVLQAC------FASSIPLPM 264
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 118/269 (43%), Gaps = 46/269 (17%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEA-QLLKELVVDGNCPHILIKGQSGSGKRALAMALLH 401
+L+P W +K++P +++ + H+ E LK + G PH+L G G+GK + A+AL
Sbjct: 26 RLQP-WVEKYRPKTVDD-VAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALAR 83
Query: 402 EIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN 461
++G + ++ +ELN + + +K +R+ + +V+
Sbjct: 84 TLFGPDTYRDRI--------------LELNASDERG--------IKVVREKIKTFAQVAV 121
Query: 462 A--------------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESV 507
+I++ E D Q ++ M+ Y+ + L C IIE +
Sbjct: 122 GRATHQAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPL 181
Query: 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ C + +++ L I+R+ED ++ I + ++RKA+ A+++
Sbjct: 182 ASRCAKFRFSALGQGAMLDRLSYISREEDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQ 241
Query: 568 LNYPFADDQPIPLGWEEVLIELAAEILAD 596
Y A+ P EVL+++A +I A+
Sbjct: 242 F-YAGAEVTP------EVLVDIAGKIPAE 263
>gi|340384190|ref|XP_003390597.1| PREDICTED: replication factor C subunit 3-like, partial [Amphimedon
queenslandica]
Length = 129
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P++LN H+ +A LK LV + PH+LI G SG+GK+ + +L E+YG
Sbjct: 3 LWVDKYRPTNLNKLHYHQEQAASLKRLVQSDDFPHLLIYGPSGAGKKTRMVCILRELYGA 62
Query: 407 ACWNEKW---------PTQVLVPVASSAHHVELN-VNLQANAKYALMGLVKEI 449
+ ++ + +S +H+E+N + + + +MGL+KE+
Sbjct: 63 GVEKLRIEHMEFITPSKKKIEISTVASNYHIEMNPSDAGIHDRVVIMGLLKEV 115
>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
Length = 335
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 22/229 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P ++ I +++++V N PH++ G G+GK + A+A+ +IYG
Sbjct: 9 WVEKYRPKKISDVIFQTQAVSIMEQIVETFNMPHMIFHGPPGTGKTSAALAMARQIYGLE 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA---ITPEVSNA-- 462
E+ +ELN + + + R N++ + PE +
Sbjct: 69 GMRERV--------------LELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMP 114
Query: 463 ---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
MI++ E D Q ++ +++ Y+ + +L C II + + C V P
Sbjct: 115 NYKMIILDEADMITADAQAALRRVIENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPI 174
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
T+ ++ L I +E + T + ++RK+I L++ L
Sbjct: 175 ETNSQVDRLKYICNQEGITFDQKALEFLTTVSSGDMRKSITILQSTACL 223
>gi|356514052|ref|XP_003525721.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
Length = 331
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 106/241 (43%), Gaps = 24/241 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS + + + L+ + DGN P++++ G G+GK +AL HE+ G
Sbjct: 14 WVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGP 73
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E VL AS +++ N K + + + +TP + ++++
Sbjct: 74 NCKEA----VLELNASDDRGIDVVRN-----KIKMFA-----QKKVTLTPG-RHKIVILD 118
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ EI+
Sbjct: 119 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGR 178
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQPIP 579
L+ + + E I A ++R+A+ L+A + + F + DQP P
Sbjct: 179 LMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFQFVNQANVFKVCDQPHP 237
Query: 580 L 580
L
Sbjct: 238 L 238
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 24/222 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL HR + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 40 WVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
N + + L A+ + + + ++I+D +L+ + S
Sbjct: 100 YGN-------------------MILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVK 140
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
M+++ E D + Q+ ++ +++ +T S + L C II ++++ C + P
Sbjct: 141 MVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGT 200
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ E L I + E D+ + + ++RKA+ L++
Sbjct: 201 HVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQS 242
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 27/248 (10%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL+P W +K++P +++ + +L++ ++ N PH+L G G+GK + +AL +
Sbjct: 16 KLQP-WVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQ 74
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN- 461
++G + + +ELN + + + R+ P V++
Sbjct: 75 LFGPDLFKSRV--------------LELNASDERGISVVREKIKTFARETPRHNPGVASD 120
Query: 462 ---------AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512
+I++ E D + Q ++ IM+ Y+ + L C IIE V + C
Sbjct: 121 GKEYPCPPYKLIILDEADSMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCS 180
Query: 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
+ P + IA E I A +LRKAI L+ + L+
Sbjct: 181 KFRFRPLEQSSSQARMEMIAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQ-- 238
Query: 573 ADDQPIPL 580
A D P P+
Sbjct: 239 ASDPPTPI 246
>gi|385301010|gb|EIF45243.1| rfc3p [Dekkera bruxellensis AWRI1499]
Length = 330
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + Q +++ DG PH+L G GSGK + +AL EIYG
Sbjct: 12 WVEKYRPQNLDQVYGQQETIQTIRKFAQDGRIPHLLFYGPPGSGKTSTIIALAREIYG-- 69
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
+ + VL AS ++ V++ N A T ++ ++ ++
Sbjct: 70 ---KNYRNMVLELNASDDRGID---------------XVRDQIKNFASTRQIFSSGFKLV 111
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ I++ YT + + + I ++ + C + P I
Sbjct: 112 ILDEADAMTNTAQNALRRIIEKYTKNTRFCILANYAHKINPALMSRCTRFRFSPLAISAI 171
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEE 584
E + + ++E + + +K ++RKA+ L+AC A A D+P +
Sbjct: 172 EERVDTVIKEEKLKIEKXAEKCLVALSKGDMRKALNVLQACAA-----ALDKP----EDT 222
Query: 585 VLIELAAEILADPSPKRLVMVRGKIQK 611
+ +++ E + P PK + ++ I +
Sbjct: 223 IXVDMIYECVGAPRPKSIEVILNAIME 249
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 115/255 (45%), Gaps = 36/255 (14%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL + H+ L +L+ + PH+L G G+GK + +A +Y
Sbjct: 17 WVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYT-- 74
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN------ 461
P Q+ S+ +ELN + +G+V+E N A T ++
Sbjct: 75 ------PKQL------SSMVLELNASDDRG-----IGIVREQIINFAQTSTLNVDKNQSS 117
Query: 462 --AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
++++ E D + Q ++ +++ +TD+ + + C II ++++ C ++ P
Sbjct: 118 VPKLVILDEADAMTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPL 177
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ--- 576
+I+ L I R E ++ + A+ ++R+ I L++ A+ + D++
Sbjct: 178 SNEQILPRLHHIVRVESLTVTEDGQKALLNLAEGDMRRVINILQS-TAMAFKTVDERNVY 236
Query: 577 -----PIPLGWEEVL 586
P+P E+++
Sbjct: 237 RCLGYPLPTDVEKIV 251
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 106/235 (45%), Gaps = 22/235 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS ++ I H+ + +LV PH+L G G+GK ++ +A+ +IYG
Sbjct: 34 WVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKIYG-- 91
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA--MIV 465
+ + + VL AS +++ N +I++ S+ +I+
Sbjct: 92 ---KHFSSMVLELNASDDRGIDVVRN--------------QIKEFAGTKKLFSSGAKLII 134
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q+ ++ +++ YT + L C II ++++ C + P ++
Sbjct: 135 LDEADSMTNDAQFSLRRVIEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVG 194
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580
+ + QI E DL+ + K ++R+ + L+A +L Y +++ + L
Sbjct: 195 DRVKQIRDLEKIDLTDGGFDALMQLGKGDMRRILNILQAA-SLAYATVNEENVYL 248
>gi|398402105|ref|XP_003853207.1| replication factor C subunit 2 [Zymoseptoria tritici IPO323]
gi|339473089|gb|EGP88183.1| hypothetical protein MYCGRDRAFT_100072 [Zymoseptoria tritici
IPO323]
Length = 408
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 17/229 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ H +L+ + N PH+L G G+GK + +AL ++YG
Sbjct: 34 WVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG-- 91
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV--------KEIRDNLAITPEV 459
E T+VL AS + + N +A M L +E R + P
Sbjct: 92 --PELIKTRVLELNASDERGISIVREKVKN--FARMQLSNPPSGPAGEEYRKKYSCPP-- 145
Query: 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+I++ E D + Q ++ M+ Y+ + L C II+ + + C +
Sbjct: 146 -YKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSL 204
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ + IAR E L + ++ +LRKAI L++ L
Sbjct: 205 DEGNAGKRIEDIARLEAVTLEDGVVETLLRCSEGDLRKAITFLQSAARL 253
>gi|388852328|emb|CCF53943.1| probable RFC2-DNA replication factor C, 41 KD subunit [Ustilago
hordei]
Length = 383
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 32/243 (13%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
RP W +K++P +++ H +LK+ ++ N PH+L G G+GK + +AL +++
Sbjct: 29 RP-WVEKYRPKTIDDVAAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLF 87
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD--NLAIT------ 456
G E T+VL ELN A+ + + + ++I++ LA+T
Sbjct: 88 G----PELVKTRVL----------ELN----ASDERGITVVREKIKNFAKLAVTNPKEGF 129
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK- 515
P +I++ E D + Q ++ IM+ Y+ + L C IIE + + C +
Sbjct: 130 PCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRF 189
Query: 516 --VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
+D T +E +I A F S I T + +LR+AI L++ L+
Sbjct: 190 RSLDTCSTKTRLE-MIAGAESVSFQDSSVLDTLITT-SDGDLRRAITYLQSASRLHSIAG 247
Query: 574 DDQ 576
DD+
Sbjct: 248 DDK 250
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
LR W +K++P SL+ I H + + PH+L G G+GK + +A
Sbjct: 9 LRKPWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLFYGPPGTGKTSTILA----- 63
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV---S 460
C + +P P + +ELN + +G+V+ N A T + +
Sbjct: 64 ----CARQLYP-----PALFKSMVLELNASDDRG-----IGIVRGQILNFASTRTIFCDT 109
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
+I++ E D Q ++ I++ YTD+ + + C II ++++ C + P
Sbjct: 110 FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLS 169
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+++ L QI + ED ++ + T +K ++RK + L++
Sbjct: 170 PDKMIPRLEQIVQSEDIKITENGKKALLTLSKGDMRKVLNVLQS 213
>gi|159119954|ref|XP_001710195.1| Replication factor C, subunit 3 [Giardia lamblia ATCC 50803]
gi|157438313|gb|EDO82521.1| Replication factor C, subunit 3 [Giardia lamblia ATCC 50803]
Length = 321
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 19/221 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS+ G + H ++ L+ +G PH++ G+ G+GK L AL++E++GD
Sbjct: 4 WVEKYRPSTTEGVVSHELIIAAIRALIREGRLPHMIFYGKPGTGKTTLIKALMNELFGD- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----M 463
A S H +ELN + + + + ++ + S+A +
Sbjct: 63 --------------AVSTHVLELNASDDSGVDVIRQTVKGFVTSGSVLSQQSSSATKFKI 108
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D + Q ++ +M+ + L C ++ ++ + C + P
Sbjct: 109 VIMDECDHMSSVAQASLRRLMETSIKHARFCLLCNYPEKLLPAILSRCCAFRFLPVPRES 168
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ +L +IA E ++ A I +LR+AI L++
Sbjct: 169 CLLMLEKIADAEGMQMAPGALAAIHAVTDGDLRQAINVLQS 209
>gi|449016080|dbj|BAM79482.1| replication factor C subunit 2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 28/255 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + ++ + L+ L + GN PH+L+ G G GK +A+AL + GDA
Sbjct: 7 WIEKYRPRTLSEVVGNQPVVERLRALALSGNVPHLLLVGPPGVGKTTVALALARDTLGDA 66
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + +I++
Sbjct: 67 LIQQA----VLELNASDERGIDVVRN-----------KIKMFCQQHVTLPPGRHKLIILD 111
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ IM+ Y+ + + L IIE +++ C VI+ +
Sbjct: 112 EADSMTPAAQQALRRIMELYSSTTRFALAANVSSKIIEPIQSRCAVIRFRRLGDEAVRSR 171
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLI 587
L+ + +E I A ++R +ALN + Q G+ +
Sbjct: 172 LVSVLEEEHVPYEPDGIETIVFTADGDMR---------QALN----NAQATWFGFGVITT 218
Query: 588 ELAAEILADPSPKRL 602
E + PSP RL
Sbjct: 219 EHVLRVCDSPSPARL 233
>gi|387594488|gb|EIJ89512.1| replication factor C subunit 2 [Nematocida parisii ERTm3]
gi|387596671|gb|EIJ94292.1| replication factor C subunit 2 [Nematocida parisii ERTm1]
Length = 306
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 107/222 (48%), Gaps = 18/222 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS+L+ + ++ + K L + + PH++I G G GK +A ALL+ ++ +
Sbjct: 5 WIEKYRPSTLDEIVGNKAVMDVFKILAKEESMPHLIITGPPGIGKTTVAGALLNYVFKEK 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
K +ELN + + M + ++ L+ + +++
Sbjct: 65 QSIRKECV------------MELNASDERGVDVVRMKIKGFLQKKLS-----HDRFLILD 107
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ +++ Y +S K I C D I +++++ C ++++ T ++ E+
Sbjct: 108 ESDSMTTQAQQSMRRLLEKY-ESAKFIFICNDVSKISDTIQSRCAILRLSALSTADVSEI 166
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ + A KE+ +S + + IA ++ + R+ + L+ A++
Sbjct: 167 ITRTAEKENLTISDSAISIIAETSEGDARQGLNLLQTLAAIS 208
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 100/237 (42%), Gaps = 30/237 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H+ +++ + PH+L G G+GK + +A+ +YG
Sbjct: 30 WVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARRLYG-- 87
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA----- 462
+ Q+L AS +++ +RD + E
Sbjct: 88 ---ANYKKQILELNASDDRGIDV------------------VRDQIKGFAETRGVFAKGF 126
Query: 463 -MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521
+I++ E D + Q ++ +++ YT + + + C I ++++ C + P
Sbjct: 127 KLIILDEADMMTQAAQAALRRVIEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPV 186
Query: 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578
E+ + L + E +S + ++ ++R+A+ L+AC A Y D++ I
Sbjct: 187 SEVEKRLQTVIENEGVKVSPEGKEALLKLSRGDMRRALNVLQACHA-AYDITDEEAI 242
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 106/230 (46%), Gaps = 17/230 (7%)
Query: 336 QKAVVIEKLRPF-WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRA 394
Q+ V K+R W +K++P +LN I H+ +++ + + PH+L+ G G+GK +
Sbjct: 29 QQQPVAAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTS 88
Query: 395 LAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA 454
+A ++Y D +++ + VL AS +E+ + G +
Sbjct: 89 TILACAKQLYKD----KEFGSMVLELNASDDRGIEI-----------VRGPILSFASTRT 133
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
I + ++++ E D + Q ++ +++ +T++ + L C II ++++ C
Sbjct: 134 IFKK-GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRF 192
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ P ++ L + +E DLS + T + ++R+A+ L++
Sbjct: 193 RFGPLTPELMVPRLEHVIEEEKVDLSEDGMKALVTLSSGDMRRALNILQS 242
>gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
Length = 321
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + L+++ DGN PH++I G G GK L HE+ GD+
Sbjct: 12 WVEKYRPKQLSDTVGNEETIHRLQQIAKDGNMPHLIISGLPGIGKTTSIHCLAHELLGDS 71
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K+ + +I++
Sbjct: 72 -----YSQGVLELNASDDRGIDVVRN-----------QIKQFAQKKCHLEPGKHKIIILD 115
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + C IIE +++ C +++ ++++
Sbjct: 116 EADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 175
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L++I + E+ + + A+ ++R+A+ L++ A
Sbjct: 176 LLEIIKAENVQYTNDGLEALIFTAEGDMRQAVNNLQSTVA 215
>gi|452840856|gb|EME42793.1| hypothetical protein DOTSEDRAFT_80413 [Dothistroma septosporum
NZE10]
Length = 401
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 11/229 (4%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P+SL+ H + + V PH+L+ G G+GK + A+A+ IYG
Sbjct: 50 WVEKYRPNSLSDVSGHHDILATINKFVDTNRLPHLLLYGPPGTGKTSTALAMARRIYG-- 107
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMG-LVKEIRDNLAITPEVSNAM 463
N+ VL AS +++ + ++ K G K N I +
Sbjct: 108 --NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSNNQNDTI---AHFKL 162
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I++ E D Q ++ IM+ YT + + + + ++ + C + P +
Sbjct: 163 IILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDAD 222
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572
I +++ ++ +E +++ A + T +K ++R+A+ L+AC A + P
Sbjct: 223 IRQLVDKVISEEVVNIAPEAADSLVTLSKGDMRRALNVLQACHASSTPL 271
>gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
Length = 354
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 13/232 (5%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ H ++L + + GN PH+L G G+GK + +AL +YG
Sbjct: 23 WVEKYRPKSLSDISSQEHTVKVLTQTITSGNLPHMLFYGPPGTGKTSTILALAKTLYGPN 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ ++VL AS + ++ + +A + + +++L P +I++
Sbjct: 83 L----YKSRVLELNASDERGI--SIVREKIKNFARLTISNPSKEDLEKYPCPPYKIIILD 136
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y + +L C II+ + + C + +
Sbjct: 137 EADSMTNDAQSALRRTMETYAGITRFVLICNYITRIIDPLTSRCSKFRFKLLNNENALLR 196
Query: 528 LIQIARKEDF----DLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
L IA +E+ D + KI+ +LRK I L++ L+ F D+
Sbjct: 197 LRFIANEENLRYTGDDVLNEVLKISAG---DLRKGITYLQSAAKLSSTFDDN 245
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL+ I H + + PH+L G G+GK + +A ++Y
Sbjct: 10 WVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYSTT 69
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN---AMI 464
+N + VL AS + G+V+ + A T + N +I
Sbjct: 70 QFN----SMVLELNASDDRGI---------------GVVRNQILSFASTRTIFNKGFKLI 110
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ +M+ + ++ + L C II ++++ C + P T +I
Sbjct: 111 ILDEADAMTKDAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKI 170
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L I + E +++ + T A ++RKA+ L++
Sbjct: 171 SSRLEYIIKVEQLNVTEDGLNALVTLANGDMRKALNILQS 210
>gi|70984108|ref|XP_747574.1| DNA replication factor C subunit Rfc4 [Aspergillus fumigatus
Af293]
gi|66845201|gb|EAL85536.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
fumigatus Af293]
gi|159122360|gb|EDP47481.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
fumigatus A1163]
Length = 348
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 20/217 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + + LK + DGN PH++I G G GK + L ++ G+A
Sbjct: 30 WVEKYRPIFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSILCLARQLLGEA 89
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL ELN + + + +K P + ++++
Sbjct: 90 -----YKEAVL----------ELNASDERG-----ISRIKGFAQKKVTLPPGRHKIVILD 129
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+ + + C IIE +++ C +++ ++++
Sbjct: 130 EADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQVVKR 189
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L QI E + + A + A+ ++R+AI L++
Sbjct: 190 LKQICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQS 226
>gi|378756642|gb|EHY66666.1| replication factor C subunit 2 [Nematocida sp. 1 ERTm2]
Length = 228
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS+L+ + ++ ++ K L + + PH++I G G GK +A A L+ ++ D
Sbjct: 5 WIEKYRPSTLDEIVGNQAVIEVFKILAEEESMPHLIITGSPGIGKTTVAHAFLNRVFEDK 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
P +E+N + + + + ++ L N +V+
Sbjct: 65 ------------PGLRKECVLEMNASDERGVDVVRVKIKGFLQKKLTY-----NRFLVLD 107
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ +++ + +S K I C D I +++++ C ++++ P EI ++
Sbjct: 108 ESDSMTMQAQQSMRRLLERH-ESAKFIFICNDISKISDTIQSRCAILRLSPLSYEEISQI 166
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L + KE + A IA + + R+A+ L+ A++
Sbjct: 167 LRKTIEKEGMTVCDKSIATIAETSDGDARQALNLLQTLAAIS 208
>gi|350401447|ref|XP_003486155.1| PREDICTED: replication factor C subunit 2-like [Bombus impatiens]
Length = 351
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 24/252 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P + + + L GNCP+I+I G G GK + L + G A
Sbjct: 38 WIEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAGPPGVGKTTTILCLARILLGPA 97
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS+ +++ N + + + R NLA + + +I++
Sbjct: 98 -----FKEAVLELNASNERGIDVVRNK--------IKMFAQKRVNLA---KGKHKIIILD 141
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ M+ Y+++ + L C IIE +++ C +++ +I+
Sbjct: 142 EADSMTDGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRYGKLSDAQILAK 201
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA-------CKALNYPFADDQPIPL 580
+I++ +KED + I A+ ++R+A+ L++ + N D+P PL
Sbjct: 202 IIEVCQKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPL 261
Query: 581 GWEEVLIELAAE 592
+E+L EL A+
Sbjct: 262 LVKEML-ELCAQ 272
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W++K++P +L+ H +++L+ + PH+L G G+GK + +A+ EIYG +
Sbjct: 10 WSEKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYGSS 69
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSN--AMIV 465
N + + L A+ + + EI+D + SN +I+
Sbjct: 70 LGN-------------------MTLELNASDDRGIAVVRNEIQDFASTRTIFSNKFKLII 110
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
+ E D + Q+ ++ +M+ YT + + L C II ++++ C + P
Sbjct: 111 LDECDAMTKDAQFALRRVMEKYTRNARFCLICNYVSKIIPALQSRCTRFRFQP 163
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 31/244 (12%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS + + + L+ + DGN P++++ G G+GK +AL HE+ G
Sbjct: 17 WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-- 74
Query: 408 CWNEKWPTQVLVPVASSAHHVEL---NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMI 464
+ VL AS +++ + + A K L P + ++
Sbjct: 75 ---PNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTL--------------PPGRHKVV 117
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ Y++S + L C IIE +++ C +++ EI
Sbjct: 118 ILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 177
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD--------DQ 576
+ L+ + + E I A ++R+ + L+A + + F + DQ
Sbjct: 178 LGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQATFS-GFQFVNQANVFKVCDQ 236
Query: 577 PIPL 580
P PL
Sbjct: 237 PHPL 240
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 18/234 (7%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
KL+P W +K++P SL+ H +L+ + N PH+L G G+GK + +AL +
Sbjct: 32 KLQP-WVEKYRPKSLDDVAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQ 90
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV--------KEIRDNLA 454
+YG E ++VL AS + ++ + +A M L +E R
Sbjct: 91 LYGP----ELIKSRVLELNASDERGI--SIVREKVKDFARMQLSNPPAGPAGEEYRKKYP 144
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
P +IV+ E D + Q ++ M+ Y+ + L C II+ + + C
Sbjct: 145 CPP---YKIIVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKF 201
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ + IAR E+ L + + +LRKAI L++ L
Sbjct: 202 RFKLLDEGNAGRRIEDIARLENVTLEEGVTNTLLRCSDGDLRKAITFLQSAARL 255
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 97/222 (43%), Gaps = 24/222 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P SL HR + L + PH+L+ G G+GK + +A+ ++YG
Sbjct: 42 WVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 99
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRD-----NLAITPEVSNA 462
A + + + L A+ + + K+I+D + + + S
Sbjct: 100 -----------------AQYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVK 142
Query: 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTH 522
++++ E D + Q+ ++ +++ YT + + L C II ++++ C + P
Sbjct: 143 LVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPM 202
Query: 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ E L + E D+ + + + ++RKA+ L++
Sbjct: 203 HVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALNILQS 244
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ I H + + + + + PH+L G G+GK + +A ++Y A
Sbjct: 13 WVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPA 72
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
+N + VL AS + G+V+ + A T + + +I
Sbjct: 73 QFN----SMVLEMNASDDRGI---------------GIVRGQILSFASTGTMYRSGFKLI 113
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D + Q ++ I++ YTD+ + + C II ++++ C + P T +I
Sbjct: 114 ILDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQI 173
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
+ L I ++E+ ++S + T + ++RK + L++
Sbjct: 174 LPRLDTIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQS 213
>gi|124806707|ref|XP_001350805.1| replication factor C subunit 4 [Plasmodium falciparum 3D7]
gi|11559514|gb|AAG37992.1|AF126257_1 replication factor C subunit 4 [Plasmodium falciparum]
gi|23496934|gb|AAN36485.1| replication factor C subunit 4 [Plasmodium falciparum 3D7]
Length = 336
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 119/274 (43%), Gaps = 31/274 (11%)
Query: 329 FDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQS 388
+E SF K ++++ W +K++P L+ + + LK ++ GN P++L+ G
Sbjct: 1 MEEDSF--KNRLLKRNIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAP 58
Query: 389 GSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448
G+GK + L E+ G+ + VL AS + + + +K
Sbjct: 59 GTGKTTSILCLASEMLGN-----QAKKAVLELNASDDRGINV-----------IRDRIKS 102
Query: 449 IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVK 508
+ P + +I++ EVD Q ++ IM+ Y+D+ + L C II++++
Sbjct: 103 FAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQ 162
Query: 509 THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ C +I+ ++++ +++I E+ + + A +LRKA+ L++ A
Sbjct: 163 SRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYA- 221
Query: 569 NYPFADDQPIPLGWEEVLIELAAEILADPSPKRL 602
G E + E I PSP+R+
Sbjct: 222 ------------GLEVINKENVLHICDIPSPERI 243
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,442,757,683
Number of Sequences: 23463169
Number of extensions: 388491932
Number of successful extensions: 1211707
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1683
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 1207372
Number of HSP's gapped (non-prelim): 2658
length of query: 629
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 480
effective length of database: 8,863,183,186
effective search space: 4254327929280
effective search space used: 4254327929280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)