BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036742
(629 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1
Length = 356
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 162/293 (55%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++PSSL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + RKE L T A ++A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F +DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2
Length = 356
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLA 454
+ Q + + +S +H+E+N + N+ + + ++K + L
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122
Query: 455 ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574
+V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YPF
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTA 242
Query: 575 DQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 243 DQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1
Length = 356
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 160/293 (54%), Gaps = 19/293 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P SL H+ +A L+ LV G+ PH+L+ G SG+GK+ M +L E+YG
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457
+ Q + + +S +H+E+N + N+ + ++E+ +A +
Sbjct: 63 GVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVV---IQEMLKTVAQSQ 119
Query: 458 EVSNA------MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHC 511
++ + ++++ EVDK + Q+ ++ M+ Y +C+LILCC +I +++ C
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
Query: 512 KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571
++V P +I VL + +KE +L A ++A K+ +NLRKA++ EAC+ YP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239
Query: 572 FADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
F DQ IP WE L E A I++ +P+RL+ VRG++ +LL + P++I+
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292
>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum
GN=rfc3 PE=3 SV=1
Length = 347
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W DK++P+SL+ H + LK ++ G+ PH+L+ G SG+GK+ +A+L EIYG
Sbjct: 2 LWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGP 61
Query: 407 ACWNEKW-------PT---QVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAI 455
K PT + + SS +H+E+N + + + ++KEI + I
Sbjct: 62 NALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPI 121
Query: 456 TPEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513
A ++++ EVDK ++ Q+ ++ M+ Y C+LILCC+ +I+ +K+ C
Sbjct: 122 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 181
Query: 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573
I+V P EI +VL ++A E FDL A +A ++ NLR A+M LE+ KA YPF
Sbjct: 182 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 241
Query: 574 DDQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
+ L WE + ++ + + SP RL +VRGK+ +LL + P+LI
Sbjct: 242 STELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIF 291
>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=B14D6.460 PE=3 SV=1
Length = 352
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 147/288 (51%), Gaps = 13/288 (4%)
Query: 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDAC 408
DKH+P SL+ H ++ L+ L G+ PH+L+ G SG+GK+ +A L E+YG
Sbjct: 5 VDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64
Query: 409 WNEKWPTQVL---------VPVASSAHHVELNVNLQANA-KYALMGLVKEI--RDNLAIT 456
K +V + +S +H+E+ + N + + L+KE+ + ++
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDLS 124
Query: 457 PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516
+ ++VI E D Q ++ M+ Y+ + +LIL +II +++ C +++V
Sbjct: 125 AKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRV 184
Query: 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
P EI +VL A+KE + + +IA ++ +NLR+A++ EA A N D
Sbjct: 185 AAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDST 244
Query: 577 PI-PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
PI P WE ++ ++A EI+ + +P R++ VR K+ LL + +IL
Sbjct: 245 PIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIIL 292
>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc5 PE=1 SV=1
Length = 358
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 19/295 (6%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W D+++P +L H+ ++ L L PH+L+ G SG+GK+ +A+L E+YG
Sbjct: 2 LWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
Query: 407 ACWNEKWPTQVL---------VPVASSAHHVELNVNLQANAKYALMG-LVKEIRDNLAIT 456
K + + + SS HH+E+ + N +M L+K++ + +
Sbjct: 62 GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121
Query: 457 PEVSNA--MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVI 514
+ ++VI D+ Q ++ M+ Y+++ +LIL IIE +++ ++
Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181
Query: 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL---NYP 571
+V P EI+ V+ +I + + + IA +NLRKAI+ LE A N
Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQ 241
Query: 572 FAD---DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLIL 623
D P+P W+ + ++ +L + SP R++ VR + LL+ + P IL
Sbjct: 242 LIDTGAQLPLP-DWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTIL 295
>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1
Length = 354
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 31/303 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYG 405
W DK++P SLN + LK L + PH+L+ G +G+GK+ MALL I+G
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 406 DACWNEKWPTQVLVP---------VASSAHHVELN-VNLQANAKYALMGLVKEI------ 449
+ K + V V SS +H+E+ ++ N + + L+KE+
Sbjct: 63 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
Query: 450 -----RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504
+D LA + ++I E + + Q ++ M+ Y+ + +LI+ C+ II
Sbjct: 123 DFQDSKDGLAHRYKC----VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178
Query: 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL-SMTFAAKIATKAKQNLRKAIMALE 563
+K+ C +I+ P EI +L + E L + +IA + NLR +++ LE
Sbjct: 179 APIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238
Query: 564 ACKALNYPFADDQPIPL---GWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPK 620
+ ALN A P+ W V+ +L +I+ + S L+ R + LLA +
Sbjct: 239 S-MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPAN 297
Query: 621 LIL 623
+IL
Sbjct: 298 IIL 300
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 19/223 (8%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L I H+ + L V GN PH+L G G GK A A+AL E+YG
Sbjct: 6 IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYG- 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIV 465
E W + + AS ++ + N++ A+ A +G E +I
Sbjct: 65 ----ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLG-------------EAKFKIIF 107
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ Y +C+ I+ C IIE +++ C V + P +I
Sbjct: 108 LDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDIT 167
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+ +IA+ E + + A+ ++R+AI AL++ +
Sbjct: 168 TGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI 210
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + +G+++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----IGVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P H
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E L +IAR E +L I ++ ++RKAI L+ A++
Sbjct: 165 MAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVS 210
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + LK V + H+L G +G+GK A A+ E+YGD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E H +ELN + + + +V++ N A T V +I
Sbjct: 76 -WRE--------------HFLELNASDERG-----IDVVRDRIKNFARTSFGGVEYRIIF 115
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ M+ ++++ + IL C II+ +++ C V + P +
Sbjct: 116 LDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVA 175
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
E + IA +ED +L+ + A ++RKAI L+A
Sbjct: 176 EEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 215
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
R W +K++P +L+ + H + LK+ + + PH+L G +G GK A A+ E+Y
Sbjct: 11 REIWIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVY 70
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS---- 460
GD W E + +ELN + Q + +RD + S
Sbjct: 71 GDD-WRENF--------------LELNASDQRG--------IDVVRDRIKSFARASFGGY 107
Query: 461 -NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+ +I + E D Q ++ M+ ++D+ + IL C II+ +++ C V + P
Sbjct: 108 DHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPL 167
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E + IA E +L+ + A ++RKAI L+A +
Sbjct: 168 GDAAVDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAVMG 217
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + L V + PH+L G G GK A+AL ++YGD
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L I+ KE+ +L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P H
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E L IA+ E ++ I ++ ++RKAI L+ A N
Sbjct: 165 MAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATN 210
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 17/221 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + + + LK+ V + N PH+L G G+GK A+AL+ ++YG+
Sbjct: 6 LWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGN 65
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ +ELN + + + VKE +A + V +I++
Sbjct: 66 NY---------------RQYFLELNASDERGID-VIRNKVKEFARTVA-SNNVPFKVILL 108
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ YT++ + IL C IIE +++ + + P +++
Sbjct: 109 DEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVN 168
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
LIQIA+ E + I + ++RKAI ++A A
Sbjct: 169 RLIQIAKNEKVEFDPKGIETIFDITQGDMRKAINVIQAASA 209
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 17/221 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + R LK+ V + N PH+L G G+GK A+AL+H++YGD
Sbjct: 9 LWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ + +ELN + + + VKE + I ++ ++++
Sbjct: 69 NY---------------TEYFLELNASDERGID-VIRNKVKEFARTV-IPGDIPFKVVLL 111
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ YT++ + IL C IIE +++ + + P +++
Sbjct: 112 DEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVN 171
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
LI IA+ E + I ++RK+I L+A A
Sbjct: 172 RLIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASA 212
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 23/229 (10%)
Query: 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403
L W +K++P SL+ + +H + LK+ V N PH+L G G+GK A AL H++
Sbjct: 5 LEMLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDL 64
Query: 404 YGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT---PEVS 460
+G+ + +ELN + + + +++E A + PE+
Sbjct: 65 FGENY---------------RQYMLELNASDERG-----INVIREKVKEFARSRTPPEIP 104
Query: 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520
++++ E D Q ++ +M+ Y+ + IL II+ +++ C + P
Sbjct: 105 FKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLS 164
Query: 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+++E L IA E D I ++ ++RKAI L+A L
Sbjct: 165 KQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLG 213
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P SL+ + + + LK V D N PH+L G G+GK A+AL+H++YGD
Sbjct: 8 LWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGD 67
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ +ELN + + + VKE +A V ++++
Sbjct: 68 NY---------------RQYFLELNASDERGID-VIRNKVKEFARTVA-GGNVPFKVVLL 110
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ M+ YT++ + IL C IIE +++ + + P +++
Sbjct: 111 DEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVA 170
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L IA+ E + I + ++RKAI L+A
Sbjct: 171 RLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQA 208
>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit L478 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L478 PE=3 SV=1
Length = 370
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 14/253 (5%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG- 405
F+ +K++P + F+ + + LK L + + PHI+I G SGSGK+ L LL +Y
Sbjct: 2 FFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYDE 61
Query: 406 --DACWNEKW-----PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI---RDNLAI 455
+ K+ T+ + + S +H+ + + KY L ++K+ +
Sbjct: 62 DVNILRKRKYNINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFDIF 121
Query: 456 TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515
+ IVI+ ++ A + Q ++ M+ Y +C+ I+ C + I++ +++ C+
Sbjct: 122 KTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFC 181
Query: 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PF-A 573
V P I V+ IA E+ L+ I NL+ AI L CK LN PF A
Sbjct: 182 VPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIWFLN-CKGLNCSPFIA 240
Query: 574 DDQPIPLGWEEVL 586
D+ L E +L
Sbjct: 241 LDEAFDLVVESIL 253
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 23/224 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ E L IA+ E +L I ++ ++RKAI L+ A
Sbjct: 165 MAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAA 208
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 21/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ + + LKE V + N PH+L G G+GK A+AL H++YG
Sbjct: 5 LWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYG- 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMI 464
E W L AS +++ + I+D P +V ++
Sbjct: 64 ----ESWRDNTLELNASDERGIDV--------------IRSRIKDYARTLPIGDVPFKLV 105
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
++ E D Q ++ M+ ++ + + IL IIE +++ C V + P +
Sbjct: 106 ILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDA 165
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L IA++E + I +++ +LRKAI L+A A++
Sbjct: 166 FQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAASAIS 210
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H + L V + PH+L G G GK A+AL ++YG+
Sbjct: 5 WVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ +L C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L +I+ KE+ L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 23/232 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL IIE +++ +I+ +P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
++ L IA E +S I + ++RKAI AL+ A +D
Sbjct: 165 VISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAAATEKEITED 216
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 21/225 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P+ L + + L V GN PH+L G +G GK A+ L E +GD
Sbjct: 7 IWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ W AS +++ N +I++ P A ++
Sbjct: 67 S-----WQMNFRELNASDERGIDVVRN--------------QIKEFARTRPAGDAAFKIL 107
Query: 467 Y--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P +
Sbjct: 108 FLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAV 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E + +IA +E D++ + A+ ++RKAI AL+ L+
Sbjct: 168 KEEITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILS 212
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ I LK V +G+ PH++ G +G+GK + A+AL E++GD
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGD- 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W L AS +++ N I+D I P ++ +I
Sbjct: 64 ----DWKENFLELNASDERGIDIIRN--------------NIKDFAKIRPSNKLGFKIIF 105
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D+ Q ++ M+ + + + I C II +++ C V++ P+ E M
Sbjct: 106 LDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRF-RPLDKEAM 164
Query: 526 E-VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
E L +IA+ E FD+ I + ++RKAI ++A ++
Sbjct: 165 ERKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAINVMQAIQS 207
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 22/225 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P LN + L V N PH+L G G GK A A+++ EI+G+
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + ELN + + + +V+ N A T + A +I
Sbjct: 75 LWRENF--------------TELNASDERG-----IDIVRNKIKNFAKTAPMGGAPFKII 115
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ ++ +C+ IL C IIE +++ C V + I
Sbjct: 116 FLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAI 175
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
E L IA+++D ++ + A+ ++RKA+ +L+A ++
Sbjct: 176 RERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAAAFID 220
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L + H + L V + PH+L G G GK A+AL ++YGD
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L I+ KE L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 23/226 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL II+ + + C V + P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSL 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ E L IA+ E +L I ++ ++RKAI L+ A N
Sbjct: 165 MAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATN 210
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 23/221 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P +L + + + L+ V PH+L G +G GK A+AL E++GD
Sbjct: 7 IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
WN + ELN + + + +V+ A T + +A +
Sbjct: 67 T-WNMNFR--------------ELNASDERG-----IDVVRNQIKQFARTAPLGDATFKI 106
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+ + E D + Q ++ M+ Y ++C+ IL C II+ +++ C + + P
Sbjct: 107 LFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEA 166
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
I E + +IA+KE + I + ++RKAI AL+
Sbjct: 167 ISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQG 207
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + H LK V + + P+++ G +G GK A+AL EI G
Sbjct: 8 WVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG-- 65
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E W L AS A ++ V+ N V +I+
Sbjct: 66 ---EYWRQNFLELNASDARGIDT---------------VRTSIKNFCRLKPVGAPFRIIF 107
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P H+I+
Sbjct: 108 LDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQII 167
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L IA KE+ + I A+ +LRKAI L++ +L
Sbjct: 168 KRLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLG 211
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + Q LK V N PH+L G G+GK A A+AL +++G
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-- 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
E W + +E+N + + + +V+ A T + A +I
Sbjct: 65 ---ENW----------RDNFIEMNASDERG-----IDVVRHKIKEFARTAPIGGAPFKII 106
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+ SC+ IL C IIE +++ C V + P +
Sbjct: 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+ L++I KE ++ + + + RKAI AL+ A+
Sbjct: 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + H+ + LK V + PH+L G G GK A+ L ++YG+
Sbjct: 5 WVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNT 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WKENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ +L C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
++ L +I+ KE ++ + I ++ ++RKAI L+ A++
Sbjct: 165 VKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAVS 209
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 21/224 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P L+ + + L+ V GN PH+L G +G GK A+AL E +GD
Sbjct: 7 IWIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGD 66
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
+ W T AS +++ N +I++ +P ++
Sbjct: 67 S-----WQTNFREMNASDERGIDVVRN--------------QIKEFARTSPLAGATFKIL 107
Query: 467 Y--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P +
Sbjct: 108 FLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAV 167
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568
+E +IA E ++ I A ++RKAI AL+ L
Sbjct: 168 IEETRRIAAAEGLTVTEGALDAIVYVASGDMRKAINALQGAAIL 211
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 23/225 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L + H + L V + PH+L G G GK A+AL ++YG+
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + +ELN + + + +++ + A T + +A +I
Sbjct: 65 -WRENF--------------LELNSSDERG-----IDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ Y+D C+ IL C II +++ C + + P T ++
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
+E L I+ KE L I ++ ++RKAI L+ A++
Sbjct: 165 VENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS 209
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 22/226 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P LN + LK V N PH+L G G GK A A+++ EI+G+
Sbjct: 14 IWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + ELN + + + +V+ N A T + A +
Sbjct: 74 DLWRENF--------------TELNASDERG-----IDIVRNKIKNFAKTAPIGGAPFKI 114
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
I + E D Q ++ M+ ++ +C+ IL C IIE +++ C V +
Sbjct: 115 IFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEA 174
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
I E L IA + ++ + A+ ++RKA+ +L+A ++
Sbjct: 175 IKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAAAFID 220
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 21/237 (8%)
Query: 341 IEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400
+E+ W +K++P L I + + L+ V PH+L G +G+GK A+AL
Sbjct: 1 MEETHAIWIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALA 60
Query: 401 HEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460
E +G E W AS +++ N +I+ +P
Sbjct: 61 REFFG-----EDWQMNFRELNASDERGIDVVRN--------------QIKQFARTSPFGG 101
Query: 461 NAMIVIY--EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDP 518
+ +++ E D Q ++ M+ Y +C+ IL C II+ +++ C + + P
Sbjct: 102 STFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRP 161
Query: 519 PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575
+ E++ +I+ ++ ++ I A+ ++RKAI AL+ L + D
Sbjct: 162 LGRQAVSEMVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPD 218
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L+E V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL IIE +++ +I+ P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ L IA E +S I + ++R+AI AL+
Sbjct: 165 VFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQ 204
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 23/233 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P ++ I + LK V N PH+L G G+GK A+AL HE+YGDA
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP--EVSNAMIV 465
W E + +ELN A+ + + + ++++ P +V ++
Sbjct: 64 -WRE--------------NFLELN----ASDERGIDVIRHKVKEFARAKPIGDVPFKIVF 104
Query: 466 IYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
+ E D Q ++ IM+ Y+ S + IL C IIE +++ V K P
Sbjct: 105 LDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFR 164
Query: 526 EVLIQIARKEDFDLSM--TFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576
E++ +I + E L + A+ +LRKAI L+A ++ D+
Sbjct: 165 ELINRIVKGEGLILENEDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDR 217
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + LK V N PH+L G G GK A A+++ EI+G+
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---MI 464
W E + ELN + + + +V+ N A T + A +I
Sbjct: 71 LWRENF--------------TELNASDERG-----IDVVRTKIKNFAKTAPMGGAEFKII 111
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D Q ++ M+ ++++C+ IL C IIE +++ C V + I
Sbjct: 112 FLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAI 171
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ L IA+ + ++ + ++ ++RKA+ +L+A
Sbjct: 172 RKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAA 212
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 21/221 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ Q LK V PH+L G G+GK + A+AL E++GD
Sbjct: 4 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGD 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE--VSNAMI 464
+ W E + VE+N A+ + + + +I+D I P + ++
Sbjct: 64 S-WKE--------------NMVEMN----ASNENGIDVIRNKIKDIARIKPSNPLGFKIL 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D+ Q ++ M+ Y+++ + I C II +++ V++ P I
Sbjct: 105 FLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYI 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
L +IA+ E F + + + ++RKAI L+A
Sbjct: 165 SRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQAV 205
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
FW +K++P S + + L++ V GN PH+L G G+GK +A+ L E+YG+
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA---M 463
W E + +ELN + + + +++E A T V A +
Sbjct: 65 -YWRE--------------NTLELNASDERG-----INVIRERVKEFARTAPVGKAPFKL 104
Query: 464 IVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523
+++ E D Q ++ IM+ Y + + IL IIE +++ +I+ P
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEA 164
Query: 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563
+ L IA E +S I + ++R+AI AL+
Sbjct: 165 VFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQ 204
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 22/219 (10%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ I + L++ V + + P+++ G +G GK A+AL+ I G
Sbjct: 5 WVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
E W L AS A ++ N +I++ + P V +I+
Sbjct: 63 ---EYWRQNFLELNASDARGIDTVRN--------------DIKNFCRLKP-VGAPFRIIF 104
Query: 468 --EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIM 525
EVD + Q+ ++ M+ YT + IL C II+ +++ C + + P EI
Sbjct: 105 LDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIA 164
Query: 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L I E F+ + I A+ ++RKA+ L+A
Sbjct: 165 NRLKYICTSERFEYTDGGIEAIEYFAEGDMRKAVNVLQA 203
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 17/223 (7%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
WA+K++P +L+ + LK+ V + N PH+L G G+GK A L H+++G
Sbjct: 12 LWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG- 70
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E + +L AS +++ + VKE + + ++++
Sbjct: 71 ----ENYRQYMLELNASDERGIDV-----------IRSKVKEFART-RVAANIPFKIVLL 114
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
E D Q ++ +M+ YT + + IL IIE +++ C V + P +++
Sbjct: 115 DEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVIS 174
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569
L IA +E ++ I ++ ++R+AI L+A AL
Sbjct: 175 RLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAALG 217
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc4 PE=1 SV=1
Length = 342
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 23/246 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + + LK + +GN PH++I G G GK + L H + G A
Sbjct: 23 WVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPA 82
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K I P + +I++
Sbjct: 83 -----YKEGVLELNASDERGIDVVRNR-----------IKAFAQKKVILPPGRHKIIILD 126
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y+++ + L C IIE +++ C +++ ++++
Sbjct: 127 EADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQR 186
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA-------LNYPFADDQPIPL 580
L+ I + E + + A + A+ ++R+A+ L++ A N DQP P+
Sbjct: 187 LLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPV 246
Query: 581 GWEEVL 586
+L
Sbjct: 247 AIHAML 252
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406
W +K++P SL+ Q LK V PH+L G G+GK + A+AL E++G+
Sbjct: 4 IWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGE 63
Query: 407 ACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE--VSNAMI 464
+ W E + +E+N A+ + + + +I+D I P + ++
Sbjct: 64 S-WKENF--------------IEMN----ASNENGIDVIRNKIKDIARIRPSNPLGFKIL 104
Query: 465 VIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEI 524
+ E D+ Q ++ M+ Y+++ + + C II +++ V++ P I
Sbjct: 105 FLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFI 164
Query: 525 MEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ L +IA+ E F + + + ++RKAI L+A
Sbjct: 165 KKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAV 205
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P L+ + ++ L+++ DGN PH++I G G GK L HE+ G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-- 68
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
+ VL AS +++ N +K P + ++++
Sbjct: 69 ---RSYADGVLELNASDDRGIDVVRN-----------QIKHFAQKKLHLPPGKHKIVILD 114
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D Q ++ M+ Y++S + C IIE +++ C +++ ++++
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
L+QI + ED + I A+ ++R+AI L++ A
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA 214
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 28/228 (12%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
+ W +K++P L + H + L+ V + PH+L G +G+GK A ++++ E+Y
Sbjct: 9 QEIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELY 68
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
GD W L AS +++ +RD + S
Sbjct: 69 GD-----DWQDNFLELNASDERGIDV------------------VRDRIKDFARSSFGGH 105
Query: 463 ---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+I + E D + Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 106 NYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQL 165
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L +IA E + + + A ++R+AI AL+A A
Sbjct: 166 GDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASA 213
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 28/228 (12%)
Query: 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404
+ W +K++P L + H + L+ V + PH+L G +G+GK A ++++ E+Y
Sbjct: 9 QEIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELY 68
Query: 405 GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNA-- 462
GD W L AS +++ +RD + S
Sbjct: 69 GD-----DWQDNFLELNASDERGIDV------------------VRDRIKDFARSSFGGH 105
Query: 463 ---MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519
+I + E D + Q ++ M+ ++++ + IL C II+ +++ C V +
Sbjct: 106 NYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQL 165
Query: 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567
+ L +IA E + + + A ++R+AI AL+A A
Sbjct: 166 GDDAVAAHLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASA 213
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 20/218 (9%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++P +L+ + LK V + + P+I+ G +G GK A+AL + G
Sbjct: 5 WVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLG-- 62
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVI 466
E W L AS A ++ N +++ K +G I I +
Sbjct: 63 ---EYWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGAPFRI--------------IFL 105
Query: 467 YEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME 526
EVD + Q ++ M+ YT + IL C II+ +++ C + + P I++
Sbjct: 106 DEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIK 165
Query: 527 VLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564
L IA +E + + I + ++RK+I L+A
Sbjct: 166 RLKYIASEEGIEAEQSALENIVYFTQGDMRKSINILQA 203
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 25/243 (10%)
Query: 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402
+L+P W +K++P +L+ + Q+L + N PH+L G G+GK + +AL +
Sbjct: 31 RLQP-WVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQ 89
Query: 403 IYGDACWNEKWPTQVLVPVASSAHHVEL---------NVNLQANAKYALM------GLVK 447
+YG E ++VL AS + + L Y +M G K
Sbjct: 90 LYG----PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAK 145
Query: 448 EI--RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505
+ RD + P +IV+ E D + Q ++ M+ Y+ + L C II+
Sbjct: 146 MVRYRDKYSCPP---FKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIID 202
Query: 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565
+ + C + + + IA+ ED L + ++ A +LRKAI L++
Sbjct: 203 PLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSA 262
Query: 566 KAL 568
L
Sbjct: 263 ARL 265
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 20/270 (7%)
Query: 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407
W +K++PS L+ + H + L + + + PH+L G G+GK +A ++Y
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPT 90
Query: 408 CWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIY 467
K + VL AS +++ N N GL + + T V ++++
Sbjct: 91 ----KMASMVLELNASDERGIDVVRNTIVNFAQT-KGL--QAFSTSSNTGTVPFKLVILD 143
Query: 468 EVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEV 527
E D + Q ++ +++ YTD+ + + C I+ ++++ C + P I+
Sbjct: 144 EADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPR 203
Query: 528 LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD--------QPIP 579
L I E ++ + +K ++R I L++ A+++ + QP P
Sbjct: 204 LEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQS-TAMSFDTVSENTVYQCIGQPTP 262
Query: 580 LGWEEVLIELAAEILADPSPKRLVMVRGKI 609
+EV+ +L DPS K + ++ K+
Sbjct: 263 KEMKEVV----KTLLNDPSKKCMNTIQTKL 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,494,575
Number of Sequences: 539616
Number of extensions: 9280242
Number of successful extensions: 29655
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 29394
Number of HSP's gapped (non-prelim): 248
length of query: 629
length of database: 191,569,459
effective HSP length: 124
effective length of query: 505
effective length of database: 124,657,075
effective search space: 62951822875
effective search space used: 62951822875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)