Query 036742
Match_columns 629
No_of_seqs 359 out of 2306
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2035 Replication factor C, 100.0 1.6E-43 3.6E-48 356.3 28.3 281 347-627 2-296 (351)
2 KOG0991 Replication factor C, 100.0 3E-39 6.6E-44 318.7 20.8 231 344-591 13-251 (333)
3 KOG0989 Replication factor C, 100.0 1.4E-38 3.1E-43 325.2 22.6 261 345-627 23-296 (346)
4 PLN03025 replication factor C 100.0 1.3E-35 2.9E-40 313.9 27.5 262 346-627 1-265 (319)
5 PRK14956 DNA polymerase III su 100.0 4.5E-33 9.7E-38 305.3 28.1 273 344-628 4-290 (484)
6 PRK07003 DNA polymerase III su 100.0 8.3E-33 1.8E-37 313.0 27.1 273 345-627 3-286 (830)
7 PRK14958 DNA polymerase III su 100.0 3.6E-32 7.9E-37 303.7 26.4 270 345-627 3-286 (509)
8 PRK14949 DNA polymerase III su 100.0 5.4E-32 1.2E-36 311.3 26.5 270 345-627 3-286 (944)
9 PRK12323 DNA polymerase III su 100.0 5E-32 1.1E-36 303.6 25.0 218 345-567 3-231 (700)
10 PRK14952 DNA polymerase III su 100.0 6E-31 1.3E-35 296.8 27.7 269 347-627 2-286 (584)
11 PRK14964 DNA polymerase III su 100.0 8E-31 1.7E-35 290.0 28.0 266 348-627 3-282 (491)
12 PRK07994 DNA polymerase III su 100.0 1.1E-30 2.4E-35 296.4 29.0 218 345-567 3-226 (647)
13 PRK14960 DNA polymerase III su 100.0 1E-30 2.2E-35 293.7 28.3 269 345-626 2-284 (702)
14 PRK14951 DNA polymerase III su 100.0 6.6E-31 1.4E-35 297.5 26.2 270 345-627 3-291 (618)
15 PRK07764 DNA polymerase III su 100.0 1.7E-30 3.8E-35 302.7 28.2 215 348-567 5-227 (824)
16 PRK08691 DNA polymerase III su 100.0 1.9E-30 4.1E-35 293.7 25.6 270 345-627 3-286 (709)
17 PRK14962 DNA polymerase III su 100.0 4.1E-30 9E-35 284.6 27.5 270 346-628 2-285 (472)
18 PRK14957 DNA polymerase III su 100.0 8.5E-30 1.8E-34 285.2 28.7 270 345-627 3-286 (546)
19 PRK14963 DNA polymerase III su 100.0 7.5E-30 1.6E-34 284.6 27.3 272 347-628 4-283 (504)
20 PRK14961 DNA polymerase III su 100.0 1.2E-29 2.6E-34 273.3 27.7 270 345-627 3-286 (363)
21 PRK14965 DNA polymerase III su 100.0 1E-29 2.2E-34 288.3 28.4 269 346-627 4-286 (576)
22 PRK06645 DNA polymerase III su 100.0 1.9E-29 4E-34 280.8 29.8 275 343-627 6-298 (507)
23 PRK05896 DNA polymerase III su 100.0 2.2E-29 4.8E-34 282.6 27.6 270 345-627 3-286 (605)
24 PRK08451 DNA polymerase III su 100.0 2.5E-29 5.3E-34 280.4 27.5 218 346-568 2-225 (535)
25 PRK05563 DNA polymerase III su 100.0 4.9E-29 1.1E-33 281.7 29.6 270 345-627 3-286 (559)
26 COG2812 DnaX DNA polymerase II 100.0 6.7E-30 1.5E-34 282.2 21.2 269 346-627 4-286 (515)
27 PRK14969 DNA polymerase III su 100.0 4.7E-29 1E-33 280.1 28.0 270 345-627 3-286 (527)
28 PRK09111 DNA polymerase III su 100.0 8.9E-29 1.9E-33 280.4 28.7 271 344-627 10-299 (598)
29 PRK00440 rfc replication facto 100.0 1.7E-28 3.7E-33 257.1 28.0 257 345-627 4-269 (319)
30 PRK07133 DNA polymerase III su 100.0 1.6E-28 3.5E-33 280.3 28.9 268 345-626 5-284 (725)
31 PRK14959 DNA polymerase III su 100.0 2.8E-29 6.2E-34 282.9 22.3 217 345-566 3-225 (624)
32 PRK14953 DNA polymerase III su 100.0 3.9E-28 8.6E-33 269.9 28.8 270 345-627 3-286 (486)
33 PRK14971 DNA polymerase III su 100.0 3.9E-28 8.5E-33 276.5 29.1 273 346-627 5-288 (614)
34 PRK12402 replication factor C 100.0 4.7E-28 1E-32 255.9 27.2 263 346-627 3-293 (337)
35 PRK14954 DNA polymerase III su 100.0 6.4E-28 1.4E-32 273.9 28.9 273 346-627 4-299 (620)
36 PRK14955 DNA polymerase III su 100.0 7.8E-28 1.7E-32 262.1 27.7 218 346-568 4-235 (397)
37 PRK06305 DNA polymerase III su 100.0 6.8E-28 1.5E-32 266.2 26.8 270 345-627 4-288 (451)
38 PRK14948 DNA polymerase III su 100.0 1.1E-27 2.4E-32 272.9 27.5 269 345-627 3-287 (620)
39 TIGR02397 dnaX_nterm DNA polym 100.0 4.3E-27 9.4E-32 250.8 29.8 269 346-627 2-284 (355)
40 PRK06647 DNA polymerase III su 100.0 2.4E-27 5.3E-32 267.5 28.4 269 346-627 4-286 (563)
41 PRK04195 replication factor C 100.0 6.3E-28 1.4E-32 268.9 23.3 251 346-626 2-264 (482)
42 KOG0990 Replication factor C, 100.0 1.1E-28 2.4E-33 254.0 14.6 207 343-568 26-239 (360)
43 PRK14950 DNA polymerase III su 100.0 5.8E-27 1.3E-31 266.6 29.3 269 346-627 4-287 (585)
44 COG2256 MGS1 ATPase related to 100.0 4.5E-27 9.7E-32 248.6 23.2 255 346-629 12-292 (436)
45 PRK14970 DNA polymerase III su 100.0 3.3E-26 7.1E-31 246.4 27.5 261 345-626 4-274 (367)
46 PHA02544 44 clamp loader, smal 99.9 6.6E-26 1.4E-30 238.6 26.8 200 344-567 7-215 (316)
47 PRK13342 recombination factor 99.9 1.6E-24 3.5E-29 237.3 26.8 246 347-627 1-271 (413)
48 PRK04132 replication factor C 99.9 3.3E-24 7.1E-29 249.1 23.3 222 382-627 567-797 (846)
49 KOG1969 DNA replication checkp 99.9 5.1E-24 1.1E-28 237.2 23.5 205 346-571 259-520 (877)
50 PF05496 RuvB_N: Holliday junc 99.9 1.3E-24 2.8E-29 217.1 16.5 192 345-566 11-226 (233)
51 PRK13341 recombination factor 99.9 1.3E-23 2.8E-28 242.8 25.7 257 345-627 15-299 (725)
52 KOG0738 AAA+-type ATPase [Post 99.9 5.3E-23 1.2E-27 216.0 26.3 202 328-560 191-426 (491)
53 PRK09112 DNA polymerase III su 99.9 7.4E-23 1.6E-27 219.4 24.8 213 350-564 15-243 (351)
54 COG0470 HolB ATPase involved i 99.9 4.3E-23 9.3E-28 216.3 19.5 199 358-568 1-206 (325)
55 PRK07399 DNA polymerase III su 99.9 1.3E-22 2.9E-27 214.5 22.4 264 356-627 2-307 (314)
56 PRK07471 DNA polymerase III su 99.9 2.6E-22 5.6E-27 216.3 21.1 208 352-563 13-240 (365)
57 PRK07940 DNA polymerase III su 99.9 3.6E-22 7.9E-27 216.9 20.3 197 356-562 3-214 (394)
58 PRK00080 ruvB Holliday junctio 99.9 1.7E-21 3.6E-26 207.2 24.7 192 345-566 12-227 (328)
59 KOG2028 ATPase related to the 99.9 5.4E-22 1.2E-26 206.9 18.9 199 345-566 125-341 (554)
60 PRK05564 DNA polymerase III su 99.9 8.8E-21 1.9E-25 200.4 26.2 189 356-563 2-192 (313)
61 TIGR02902 spore_lonB ATP-depen 99.9 2.5E-21 5.4E-26 218.2 20.3 230 325-569 33-312 (531)
62 TIGR00635 ruvB Holliday juncti 99.9 3E-20 6.5E-25 194.7 23.7 182 355-566 1-206 (305)
63 TIGR00602 rad24 checkpoint pro 99.9 5.9E-21 1.3E-25 217.2 18.6 224 343-569 69-331 (637)
64 PRK08058 DNA polymerase III su 99.8 1.1E-19 2.4E-24 193.7 21.9 196 357-563 4-206 (329)
65 COG2255 RuvB Holliday junction 99.8 8.2E-20 1.8E-24 186.2 19.2 186 350-565 18-227 (332)
66 PRK08769 DNA polymerase III su 99.8 1.3E-19 2.8E-24 191.8 20.4 192 363-562 9-209 (319)
67 COG1222 RPT1 ATP-dependent 26S 99.8 7.4E-20 1.6E-24 191.5 18.1 215 350-591 143-394 (406)
68 TIGR00678 holB DNA polymerase 99.8 1.2E-19 2.6E-24 177.6 18.4 180 368-558 2-188 (188)
69 PF13177 DNA_pol3_delta2: DNA 99.8 9.2E-20 2E-24 175.4 16.7 156 362-520 1-162 (162)
70 TIGR02881 spore_V_K stage V sp 99.8 2.1E-19 4.5E-24 185.3 19.9 193 356-567 4-236 (261)
71 PRK06871 DNA polymerase III su 99.8 3E-19 6.4E-24 189.4 21.1 193 363-563 7-205 (325)
72 PRK07993 DNA polymerase III su 99.8 2.3E-19 5E-24 191.4 19.8 194 363-563 7-206 (334)
73 PRK05707 DNA polymerase III su 99.8 2.6E-19 5.7E-24 190.5 18.9 190 368-563 10-205 (328)
74 COG1223 Predicted ATPase (AAA+ 99.8 2.4E-19 5.3E-24 180.5 15.7 183 348-553 111-317 (368)
75 PF03215 Rad17: Rad17 cell cyc 99.8 8.2E-19 1.8E-23 196.4 17.6 222 343-568 4-270 (519)
76 PRK06090 DNA polymerase III su 99.8 1.8E-18 3.9E-23 183.1 17.8 190 363-563 8-203 (319)
77 PRK08084 DNA replication initi 99.8 6.3E-18 1.4E-22 172.0 21.0 183 355-566 19-214 (235)
78 KOG0730 AAA+-type ATPase [Post 99.8 4.4E-18 9.5E-23 189.2 17.3 189 352-568 428-651 (693)
79 KOG1970 Checkpoint RAD17-RFC c 99.8 1E-17 2.3E-22 182.8 19.4 221 343-570 67-324 (634)
80 PRK05917 DNA polymerase III su 99.8 1.2E-16 2.6E-21 166.6 25.3 170 366-556 5-176 (290)
81 CHL00181 cbbX CbbX; Provisiona 99.8 3.6E-17 7.7E-22 171.3 20.6 192 358-568 23-253 (287)
82 PRK08727 hypothetical protein; 99.8 5.3E-17 1.2E-21 165.0 20.8 183 355-566 16-209 (233)
83 PRK06964 DNA polymerase III su 99.8 4.1E-17 8.8E-22 174.3 20.6 190 363-562 6-226 (342)
84 PRK06893 DNA replication initi 99.8 3.4E-17 7.4E-22 165.9 19.1 185 353-566 11-208 (229)
85 TIGR02928 orc1/cdc6 family rep 99.7 1.8E-16 3.9E-21 170.0 22.3 228 348-589 8-274 (365)
86 PTZ00112 origin recognition co 99.7 1.4E-16 3E-21 182.4 21.7 206 350-568 750-988 (1164)
87 KOG0733 Nuclear AAA ATPase (VC 99.7 5.1E-17 1.1E-21 178.7 17.2 184 355-562 187-403 (802)
88 PRK08903 DnaA regulatory inact 99.7 1.8E-16 4E-21 159.5 19.4 182 353-567 13-205 (227)
89 TIGR01241 FtsH_fam ATP-depende 99.7 1.6E-16 3.4E-21 178.2 20.9 188 349-560 46-269 (495)
90 PRK00149 dnaA chromosomal repl 99.7 2.4E-16 5.2E-21 174.7 21.8 235 356-611 120-371 (450)
91 TIGR02639 ClpA ATP-dependent C 99.7 3.4E-16 7.3E-21 183.1 23.7 207 346-567 170-403 (731)
92 PRK14087 dnaA chromosomal repl 99.7 5.3E-16 1.1E-20 171.8 23.2 254 354-627 111-396 (450)
93 TIGR02880 cbbX_cfxQ probable R 99.7 2.3E-16 5E-21 165.0 19.1 192 358-568 22-252 (284)
94 TIGR02903 spore_lon_C ATP-depe 99.7 4.1E-16 8.8E-21 178.8 22.9 211 344-565 140-398 (615)
95 TIGR03420 DnaA_homol_Hda DnaA 99.7 4.1E-16 8.9E-21 156.0 20.2 185 353-566 10-206 (226)
96 PRK07276 DNA polymerase III su 99.7 7.3E-16 1.6E-20 161.1 22.7 187 362-562 6-198 (290)
97 PRK12422 chromosomal replicati 99.7 5.8E-16 1.3E-20 171.2 22.7 236 355-611 108-366 (445)
98 PTZ00361 26 proteosome regulat 99.7 2.2E-16 4.9E-21 173.6 18.0 220 345-591 170-426 (438)
99 PRK00411 cdc6 cell division co 99.7 3E-15 6.4E-20 162.3 26.4 221 350-588 25-281 (394)
100 PTZ00454 26S protease regulato 99.7 4.8E-16 1E-20 169.5 20.2 216 353-591 140-388 (398)
101 KOG0733 Nuclear AAA ATPase (VC 99.7 2.9E-16 6.2E-21 172.9 16.8 175 355-551 508-712 (802)
102 PRK14088 dnaA chromosomal repl 99.7 1E-15 2.2E-20 169.3 21.1 236 355-611 102-356 (440)
103 PRK03992 proteasome-activating 99.7 5.7E-16 1.2E-20 168.8 18.5 210 354-590 127-373 (389)
104 KOG0734 AAA+-type ATPase conta 99.7 1.9E-16 4.2E-21 171.9 14.1 179 351-553 297-504 (752)
105 TIGR00362 DnaA chromosomal rep 99.7 1.4E-15 3E-20 166.4 21.1 234 356-611 108-359 (405)
106 KOG0739 AAA+-type ATPase [Post 99.7 9.9E-17 2.1E-21 164.2 11.2 184 335-553 119-333 (439)
107 CHL00195 ycf46 Ycf46; Provisio 99.7 9.7E-16 2.1E-20 170.8 19.6 182 353-560 223-438 (489)
108 CHL00176 ftsH cell division pr 99.7 2.5E-15 5.5E-20 172.2 23.1 214 354-591 179-425 (638)
109 TIGR03345 VI_ClpV1 type VI sec 99.7 1.7E-15 3.7E-20 179.1 22.3 206 348-567 177-408 (852)
110 PRK05642 DNA replication initi 99.7 2.3E-15 5.1E-20 153.1 20.3 183 355-566 16-213 (234)
111 PRK06620 hypothetical protein; 99.7 1.6E-15 3.4E-20 152.5 18.7 168 356-566 14-194 (214)
112 PRK08699 DNA polymerase III su 99.7 1.1E-14 2.4E-19 155.1 24.8 166 363-530 6-183 (325)
113 KOG0727 26S proteasome regulat 99.7 8E-16 1.7E-20 154.6 14.7 211 354-591 151-398 (408)
114 KOG0737 AAA+-type ATPase [Post 99.7 6.2E-16 1.3E-20 162.9 13.8 180 355-557 89-298 (386)
115 PRK14086 dnaA chromosomal repl 99.7 5.2E-15 1.1E-19 167.3 22.2 234 356-611 286-538 (617)
116 PF00308 Bac_DnaA: Bacterial d 99.7 6.7E-15 1.4E-19 148.4 20.3 193 355-567 5-214 (219)
117 PRK05818 DNA polymerase III su 99.7 7.2E-15 1.6E-19 150.7 20.1 171 381-565 9-194 (261)
118 KOG0731 AAA+-type ATPase conta 99.7 2.7E-15 5.8E-20 171.3 18.7 219 353-593 306-557 (774)
119 KOG1968 Replication factor C, 99.7 5E-16 1.1E-20 181.5 12.8 199 346-567 308-537 (871)
120 TIGR01242 26Sp45 26S proteasom 99.6 3.6E-15 7.8E-20 161.0 17.9 179 353-554 117-327 (364)
121 COG1474 CDC6 Cdc6-related prot 99.6 1.9E-14 4.1E-19 155.4 22.2 219 350-586 12-262 (366)
122 KOG0736 Peroxisome assembly fa 99.6 6.7E-15 1.4E-19 165.7 19.1 184 348-555 662-879 (953)
123 PRK09087 hypothetical protein; 99.6 8.5E-15 1.8E-19 148.4 17.0 171 356-566 19-200 (226)
124 COG0593 DnaA ATPase involved i 99.6 4.1E-14 8.8E-19 153.4 21.7 233 356-611 85-334 (408)
125 TIGR03689 pup_AAA proteasome A 99.6 6.3E-15 1.4E-19 164.5 15.7 178 349-540 173-385 (512)
126 PRK07132 DNA polymerase III su 99.6 3.8E-14 8.1E-19 149.2 20.1 179 365-562 3-185 (299)
127 COG0464 SpoVK ATPases of the A 99.6 1.9E-14 4.1E-19 161.2 18.5 179 353-553 237-445 (494)
128 TIGR01243 CDC48 AAA family ATP 99.6 1.1E-14 2.5E-19 170.4 16.7 174 353-554 448-656 (733)
129 KOG0740 AAA+-type ATPase [Post 99.6 1.7E-14 3.7E-19 156.4 14.3 189 350-560 145-365 (428)
130 KOG0728 26S proteasome regulat 99.6 2.2E-14 4.7E-19 144.2 13.7 184 347-554 136-352 (404)
131 PF06068 TIP49: TIP49 C-termin 99.6 1E-13 2.3E-18 147.3 19.6 104 462-566 280-396 (398)
132 TIGR00763 lon ATP-dependent pr 99.6 2E-14 4.3E-19 169.2 15.7 174 358-552 320-535 (775)
133 COG1224 TIP49 DNA helicase TIP 99.6 2.3E-13 4.9E-18 142.8 21.7 107 462-569 293-412 (450)
134 TIGR03346 chaperone_ClpB ATP-d 99.6 8.8E-14 1.9E-18 165.2 19.6 208 346-567 161-394 (852)
135 TIGR02640 gas_vesic_GvpN gas v 99.6 4.1E-13 8.9E-18 138.9 21.9 197 364-590 8-258 (262)
136 KOG0729 26S proteasome regulat 99.5 3.1E-14 6.8E-19 144.1 12.3 189 350-562 169-394 (435)
137 PRK10865 protein disaggregatio 99.5 2.1E-13 4.7E-18 161.7 21.4 207 347-567 167-399 (857)
138 PLN00020 ribulose bisphosphate 99.5 1.3E-13 2.7E-18 147.0 16.5 148 381-554 150-331 (413)
139 CHL00095 clpC Clp protease ATP 99.5 7.8E-14 1.7E-18 165.1 15.9 201 349-567 170-399 (821)
140 PRK11034 clpA ATP-dependent Cl 99.5 3.6E-13 7.8E-18 157.2 20.8 203 350-567 178-407 (758)
141 KOG0652 26S proteasome regulat 99.5 1.5E-13 3.2E-18 139.0 13.7 173 356-552 169-374 (424)
142 PRK10733 hflB ATP-dependent me 99.5 3.8E-13 8.3E-18 155.3 18.5 192 352-567 146-373 (644)
143 COG0465 HflB ATP-dependent Zn 99.5 1E-13 2.3E-18 155.9 12.6 179 354-555 146-355 (596)
144 KOG0742 AAA+-type ATPase [Post 99.5 1.4E-12 3.1E-17 138.6 19.3 155 357-534 354-530 (630)
145 KOG0726 26S proteasome regulat 99.5 7E-14 1.5E-18 143.1 9.2 190 348-561 175-401 (440)
146 TIGR01243 CDC48 AAA family ATP 99.5 6.3E-13 1.4E-17 155.8 17.3 180 353-560 173-386 (733)
147 PRK10787 DNA-binding ATP-depen 99.5 6.5E-13 1.4E-17 155.9 17.2 172 358-551 322-535 (784)
148 CHL00206 ycf2 Ycf2; Provisiona 99.5 4.5E-13 9.7E-18 163.1 15.7 139 450-588 1722-1876(2281)
149 KOG0735 AAA+-type ATPase [Post 99.5 1.4E-12 3E-17 146.2 17.8 189 355-568 664-887 (952)
150 TIGR03345 VI_ClpV1 type VI sec 99.5 1.9E-12 4.1E-17 153.4 19.3 185 358-565 566-826 (852)
151 PF00004 AAA: ATPase family as 99.4 6E-13 1.3E-17 120.9 11.6 113 382-516 1-130 (132)
152 KOG1942 DNA helicase, TBP-inte 99.4 9.2E-12 2E-16 127.8 20.1 107 463-570 299-419 (456)
153 COG0466 Lon ATP-dependent Lon 99.4 8.6E-13 1.9E-17 148.7 13.0 169 358-551 323-537 (782)
154 PRK13407 bchI magnesium chelat 99.4 3.5E-12 7.5E-17 136.3 16.7 234 353-589 3-306 (334)
155 KOG2004 Mitochondrial ATP-depe 99.4 9E-13 1.9E-17 147.8 11.0 180 358-551 411-625 (906)
156 TIGR03015 pepcterm_ATPase puta 99.4 3.2E-11 7E-16 123.8 21.3 219 363-589 28-266 (269)
157 PRK06581 DNA polymerase III su 99.4 6.9E-11 1.5E-15 119.7 22.6 185 367-565 2-191 (263)
158 PRK11034 clpA ATP-dependent Cl 99.4 4.3E-12 9.3E-17 148.3 15.7 168 358-551 458-694 (758)
159 CHL00095 clpC Clp protease ATP 99.4 8.6E-12 1.9E-16 147.9 17.3 171 358-551 509-760 (821)
160 TIGR02639 ClpA ATP-dependent C 99.4 1.4E-11 3.1E-16 144.4 17.7 168 358-551 454-690 (731)
161 cd00009 AAA The AAA+ (ATPases 99.3 2.5E-11 5.4E-16 110.0 15.4 139 361-517 1-150 (151)
162 PRK13531 regulatory ATPase Rav 99.3 4.7E-11 1E-15 132.1 20.1 205 358-583 20-278 (498)
163 PRK05342 clpX ATP-dependent pr 99.3 2.7E-11 5.8E-16 132.9 16.8 173 359-551 72-357 (412)
164 KOG0732 AAA+-type ATPase conta 99.3 1.6E-11 3.5E-16 144.1 15.4 193 355-564 262-483 (1080)
165 PRK10865 protein disaggregatio 99.3 1E-10 2.2E-15 139.2 22.0 174 357-551 567-807 (857)
166 TIGR03346 chaperone_ClpB ATP-d 99.3 5.3E-11 1.1E-15 141.7 19.6 185 358-565 565-821 (852)
167 KOG0730 AAA+-type ATPase [Post 99.3 3E-11 6.6E-16 135.3 15.3 180 353-556 180-387 (693)
168 CHL00081 chlI Mg-protoporyphyr 99.3 8.1E-11 1.8E-15 126.3 18.0 234 356-591 15-324 (350)
169 KOG0651 26S proteasome regulat 99.3 1.1E-11 2.4E-16 128.3 10.4 179 353-553 127-339 (388)
170 KOG0744 AAA+-type ATPase [Post 99.3 1.2E-10 2.7E-15 121.2 17.2 139 381-532 179-340 (423)
171 TIGR02030 BchI-ChlI magnesium 99.3 1E-10 2.2E-15 125.3 16.8 232 357-591 3-311 (337)
172 KOG0743 AAA+-type ATPase [Post 99.3 1.6E-10 3.6E-15 125.2 17.7 153 352-534 195-385 (457)
173 COG0542 clpA ATP-binding subun 99.2 7.1E-11 1.5E-15 136.4 15.2 187 358-563 491-748 (786)
174 PF05673 DUF815: Protein of un 99.2 2E-10 4.4E-15 116.8 16.8 188 350-564 19-244 (249)
175 KOG2227 Pre-initiation complex 99.2 1.5E-10 3.2E-15 125.6 16.1 198 350-565 145-375 (529)
176 TIGR00382 clpX endopeptidase C 99.2 1.8E-10 3.9E-15 126.2 16.3 172 358-551 77-363 (413)
177 KOG2680 DNA helicase TIP49, TB 99.2 6.4E-10 1.4E-14 114.8 18.2 104 463-568 291-408 (454)
178 COG0714 MoxR-like ATPases [Gen 99.2 1.3E-09 2.7E-14 116.4 21.1 143 358-522 24-192 (329)
179 COG0542 clpA ATP-binding subun 99.2 3.4E-10 7.4E-15 130.8 17.2 201 350-568 162-392 (786)
180 TIGR00390 hslU ATP-dependent p 99.2 2.3E-10 4.9E-15 124.6 14.3 105 461-565 248-400 (441)
181 TIGR01650 PD_CobS cobaltochela 99.2 4.1E-10 8.9E-15 119.5 15.6 176 353-550 40-251 (327)
182 TIGR02442 Cob-chelat-sub cobal 99.2 7.9E-10 1.7E-14 127.8 18.8 232 357-590 3-305 (633)
183 TIGR01817 nifA Nif-specific re 99.2 6.9E-10 1.5E-14 125.9 17.5 199 351-568 189-427 (534)
184 PRK05201 hslU ATP-dependent pr 99.2 3.5E-10 7.6E-15 123.2 14.3 106 461-566 250-403 (443)
185 PF01637 Arch_ATPase: Archaeal 99.1 3.7E-10 8.1E-15 111.8 12.8 180 360-559 1-232 (234)
186 KOG1514 Origin recognition com 99.1 4.4E-09 9.6E-14 118.8 22.2 201 358-569 396-628 (767)
187 PRK08485 DNA polymerase III su 99.1 4.8E-10 1E-14 110.7 10.8 119 444-565 40-171 (206)
188 KOG0741 AAA+-type ATPase [Post 99.1 2.1E-10 4.5E-15 125.5 8.6 172 379-565 256-454 (744)
189 PHA02244 ATPase-like protein 99.1 7.8E-10 1.7E-14 118.8 11.7 130 367-523 109-265 (383)
190 PF07728 AAA_5: AAA domain (dy 99.1 4.6E-10 1E-14 104.2 8.8 107 381-511 1-139 (139)
191 TIGR02974 phageshock_pspF psp 99.1 5.4E-09 1.2E-13 111.8 17.9 190 360-568 1-232 (329)
192 PRK11331 5-methylcytosine-spec 99.0 2.7E-09 5.8E-14 117.4 15.3 165 357-529 174-369 (459)
193 COG1221 PspF Transcriptional r 99.0 4.9E-09 1.1E-13 113.9 15.9 200 354-570 74-310 (403)
194 KOG0735 AAA+-type ATPase [Post 99.0 1.3E-08 2.7E-13 114.9 18.4 240 358-616 408-686 (952)
195 PRK11608 pspF phage shock prot 99.0 1.3E-08 2.7E-13 108.9 17.6 195 356-568 4-239 (326)
196 smart00350 MCM minichromosome 99.0 1.1E-08 2.5E-13 115.4 17.8 154 358-532 203-400 (509)
197 PRK11388 DNA-binding transcrip 99.0 1.4E-08 3.1E-13 117.5 18.8 197 354-568 321-553 (638)
198 TIGR00764 lon_rel lon-related 99.0 2.2E-08 4.7E-13 115.2 19.8 104 462-565 219-367 (608)
199 PF07724 AAA_2: AAA domain (Cd 99.0 8.7E-10 1.9E-14 107.3 6.9 105 380-502 4-132 (171)
200 PF00931 NB-ARC: NB-ARC domain 99.0 3.2E-08 6.9E-13 102.4 18.9 235 364-627 2-259 (287)
201 PRK12377 putative replication 99.0 9.8E-09 2.1E-13 105.7 14.6 130 350-501 66-207 (248)
202 PRK10820 DNA-binding transcrip 99.0 1.3E-08 2.8E-13 115.3 16.6 197 353-568 199-436 (520)
203 PRK15424 propionate catabolism 98.9 1.9E-08 4.2E-13 113.9 17.3 203 355-568 216-464 (538)
204 PRK05022 anaerobic nitric oxid 98.9 2.6E-08 5.7E-13 112.5 18.3 195 356-569 185-420 (509)
205 TIGR02329 propionate_PrpR prop 98.9 1.6E-08 3.5E-13 114.4 16.4 195 355-568 209-449 (526)
206 PRK07952 DNA replication prote 98.9 1.9E-08 4.1E-13 103.4 15.2 148 349-518 63-233 (244)
207 PRK08116 hypothetical protein; 98.9 1.2E-08 2.7E-13 106.1 13.0 150 350-521 77-251 (268)
208 TIGR02031 BchD-ChlD magnesium 98.9 3.3E-08 7.1E-13 113.5 17.2 195 376-590 13-259 (589)
209 PRK15429 formate hydrogenlyase 98.9 4.5E-08 9.8E-13 114.4 18.3 195 355-568 373-608 (686)
210 PF01078 Mg_chelatase: Magnesi 98.9 5E-09 1.1E-13 104.5 8.4 46 356-403 1-46 (206)
211 PRK13765 ATP-dependent proteas 98.9 8E-08 1.7E-12 110.7 19.4 52 353-406 26-77 (637)
212 COG2607 Predicted ATPase (AAA+ 98.8 1.1E-07 2.4E-12 96.1 16.5 190 350-566 52-278 (287)
213 TIGR00368 Mg chelatase-related 98.8 8.7E-08 1.9E-12 107.8 16.2 151 355-523 189-395 (499)
214 smart00382 AAA ATPases associa 98.8 4E-08 8.6E-13 87.8 10.9 100 380-499 3-125 (148)
215 PF07726 AAA_3: ATPase family 98.8 2.1E-08 4.6E-13 92.9 9.0 108 381-512 1-130 (131)
216 PRK06921 hypothetical protein; 98.8 9E-08 1.9E-12 99.6 14.4 110 378-510 116-239 (266)
217 PF13173 AAA_14: AAA domain 98.8 6E-08 1.3E-12 89.4 11.5 121 380-524 3-127 (128)
218 COG2204 AtoC Response regulato 98.8 2E-07 4.4E-12 103.1 17.4 197 355-570 138-375 (464)
219 PRK08181 transposase; Validate 98.8 4.4E-08 9.6E-13 102.0 11.6 108 370-501 99-210 (269)
220 TIGR02915 PEP_resp_reg putativ 98.8 2.3E-07 5.1E-12 102.5 17.8 194 356-568 137-371 (445)
221 PF05621 TniB: Bacterial TniB 98.7 2.6E-07 5.5E-12 97.0 16.5 197 361-570 37-270 (302)
222 PRK14700 recombination factor 98.7 2E-07 4.4E-12 97.5 15.0 139 490-628 8-168 (300)
223 smart00763 AAA_PrkA PrkA AAA d 98.7 3.4E-07 7.3E-12 98.6 16.4 87 462-548 238-346 (361)
224 PF00158 Sigma54_activat: Sigm 98.7 1.5E-07 3.2E-12 91.5 12.5 123 360-500 1-144 (168)
225 COG1219 ClpX ATP-dependent pro 98.7 3.2E-07 6.9E-12 96.0 15.0 110 360-486 63-202 (408)
226 COG3829 RocR Transcriptional r 98.7 3.2E-07 6.9E-12 102.0 15.4 198 351-567 238-477 (560)
227 COG1220 HslU ATP-dependent pro 98.7 2.9E-07 6.3E-12 96.9 14.2 103 463-565 253-403 (444)
228 COG3604 FhlA Transcriptional r 98.7 4.1E-07 8.8E-12 100.1 15.9 195 356-569 221-456 (550)
229 PRK06835 DNA replication prote 98.6 3.4E-07 7.3E-12 98.1 13.9 130 366-519 168-317 (329)
230 PF13401 AAA_22: AAA domain; P 98.6 2.2E-07 4.7E-12 84.7 10.5 102 380-499 5-125 (131)
231 PRK10923 glnG nitrogen regulat 98.6 7.2E-07 1.6E-11 99.4 16.7 194 356-568 136-370 (469)
232 PRK06526 transposase; Provisio 98.6 9.2E-08 2E-12 98.9 8.8 106 372-501 93-202 (254)
233 PRK15115 response regulator Gl 98.6 8.9E-07 1.9E-11 97.9 17.2 191 359-568 135-366 (444)
234 KOG2170 ATPase of the AAA+ sup 98.6 8.9E-07 1.9E-11 92.2 15.9 126 359-501 83-226 (344)
235 PF01695 IstB_IS21: IstB-like 98.6 7E-08 1.5E-12 94.6 6.2 95 379-500 47-150 (178)
236 PLN03210 Resistant to P. syrin 98.6 3.7E-06 8E-11 103.8 22.7 263 306-590 137-415 (1153)
237 TIGR01818 ntrC nitrogen regula 98.6 1.6E-06 3.6E-11 96.2 17.6 194 358-570 134-368 (463)
238 TIGR01128 holA DNA polymerase 98.6 6.2E-06 1.3E-10 86.2 21.0 160 460-626 46-219 (302)
239 PRK08939 primosomal protein Dn 98.5 6.6E-07 1.4E-11 95.0 12.9 129 350-500 119-261 (306)
240 PRK11361 acetoacetate metaboli 98.5 2.9E-06 6.4E-11 94.0 18.5 192 358-568 143-375 (457)
241 KOG1051 Chaperone HSP104 and r 98.5 5.2E-07 1.1E-11 106.1 11.8 123 358-500 562-711 (898)
242 PTZ00111 DNA replication licen 98.5 9E-07 1.9E-11 104.4 12.5 158 358-531 450-656 (915)
243 PRK07452 DNA polymerase III su 98.5 4E-05 8.6E-10 81.6 23.9 220 380-626 2-239 (326)
244 PRK05574 holA DNA polymerase I 98.5 8.4E-05 1.8E-09 79.1 26.4 161 460-627 76-255 (340)
245 KOG0736 Peroxisome assembly fa 98.5 5E-06 1.1E-10 95.3 17.5 171 361-556 404-599 (953)
246 PRK09862 putative ATP-dependen 98.5 3E-06 6.5E-11 95.4 15.5 158 355-521 188-390 (506)
247 PF14532 Sigma54_activ_2: Sigm 98.4 1.1E-06 2.3E-11 82.1 10.0 106 380-518 22-137 (138)
248 COG0606 Predicted ATPase with 98.4 5.9E-07 1.3E-11 98.7 8.3 47 355-403 176-222 (490)
249 COG1239 ChlI Mg-chelatase subu 98.4 1.4E-05 3.1E-10 86.9 18.7 197 357-556 16-253 (423)
250 PF05729 NACHT: NACHT domain 98.4 2.3E-06 5E-11 80.4 11.2 141 381-532 2-163 (166)
251 PF12775 AAA_7: P-loop contain 98.4 1.2E-06 2.7E-11 91.5 10.1 141 369-533 25-194 (272)
252 KOG0745 Putative ATP-dependent 98.4 5.5E-06 1.2E-10 89.8 14.7 124 381-521 228-388 (564)
253 PRK06585 holA DNA polymerase I 98.4 0.00016 3.4E-09 77.6 26.1 228 370-627 9-252 (343)
254 PRK09183 transposase/IS protei 98.4 1.3E-06 2.9E-11 90.5 9.8 113 365-500 88-206 (259)
255 PHA00729 NTP-binding motif con 98.4 3.3E-06 7E-11 85.8 12.3 131 370-530 8-138 (226)
256 PRK05629 hypothetical protein; 98.4 0.00013 2.9E-09 77.6 24.7 157 460-624 64-231 (318)
257 PRK10365 transcriptional regul 98.4 1.5E-05 3.3E-10 87.7 18.0 191 359-568 140-371 (441)
258 COG1484 DnaC DNA replication p 98.3 2.7E-06 5.8E-11 88.1 10.0 97 378-502 104-211 (254)
259 PRK04132 replication factor C 98.3 3.2E-07 6.9E-12 108.3 3.3 52 344-395 5-56 (846)
260 PRK13406 bchD magnesium chelat 98.3 1.3E-05 2.9E-10 91.9 15.5 210 363-590 8-251 (584)
261 KOG0478 DNA replication licens 98.3 2.9E-05 6.3E-10 88.2 17.7 146 359-522 430-616 (804)
262 PHA02774 E1; Provisional 98.3 6.2E-06 1.3E-10 93.2 12.3 118 365-518 419-554 (613)
263 COG3267 ExeA Type II secretory 98.2 6.8E-05 1.5E-09 76.9 17.8 181 363-564 36-248 (269)
264 COG1618 Predicted nucleotide k 98.2 8.7E-06 1.9E-10 78.2 10.6 147 381-532 7-172 (179)
265 PF03266 NTPase_1: NTPase; In 98.2 8.3E-07 1.8E-11 86.3 3.7 62 461-525 96-164 (168)
266 PRK07914 hypothetical protein; 98.2 0.00052 1.1E-08 73.2 24.8 160 460-627 64-236 (320)
267 KOG0477 DNA replication licens 98.2 1.7E-05 3.8E-10 89.0 13.1 138 358-512 449-624 (854)
268 PF12774 AAA_6: Hydrolytic ATP 98.1 9.1E-05 2E-09 75.7 17.0 137 368-538 23-183 (231)
269 PF13191 AAA_16: AAA ATPase do 98.1 5.5E-06 1.2E-10 79.6 7.5 46 359-404 1-49 (185)
270 PRK05907 hypothetical protein; 98.1 0.0013 2.8E-08 70.2 25.4 221 367-627 7-246 (311)
271 PRK08487 DNA polymerase III su 98.1 0.0012 2.7E-08 70.6 24.5 222 368-627 4-240 (328)
272 COG3283 TyrR Transcriptional r 98.1 0.00041 8.8E-09 74.2 20.0 194 356-567 202-430 (511)
273 KOG0741 AAA+-type ATPase [Post 98.0 5.4E-05 1.2E-09 84.0 13.6 158 381-567 540-721 (744)
274 PF00910 RNA_helicase: RNA hel 98.0 1.9E-05 4.1E-10 70.8 7.9 23 382-404 1-23 (107)
275 PRK04841 transcriptional regul 98.0 0.00052 1.1E-08 82.3 22.4 178 353-559 9-223 (903)
276 PF14516 AAA_35: AAA-like doma 97.9 0.0013 2.8E-08 70.7 21.0 184 361-567 14-245 (331)
277 PF13604 AAA_30: AAA domain; P 97.9 0.00012 2.7E-09 72.7 11.8 115 364-500 4-131 (196)
278 PF06144 DNA_pol3_delta: DNA p 97.9 0.00021 4.5E-09 68.5 12.7 106 461-566 58-171 (172)
279 COG1373 Predicted ATPase (AAA+ 97.9 0.0012 2.5E-08 72.9 19.9 130 369-526 28-161 (398)
280 COG3284 AcoR Transcriptional a 97.9 6.6E-05 1.4E-09 85.1 10.3 170 381-570 338-541 (606)
281 COG1241 MCM2 Predicted ATPase 97.8 3.3E-05 7.1E-10 89.4 6.4 134 358-512 286-461 (682)
282 PRK10536 hypothetical protein; 97.8 0.00026 5.7E-09 73.3 12.4 42 360-403 57-98 (262)
283 PF03969 AFG1_ATPase: AFG1-lik 97.8 0.0001 2.2E-09 80.2 9.6 120 379-519 62-201 (362)
284 PF10443 RNA12: RNA12 protein; 97.8 0.00098 2.1E-08 73.3 17.2 105 462-567 150-284 (431)
285 COG5271 MDN1 AAA ATPase contai 97.7 0.00061 1.3E-08 83.3 15.6 146 381-560 890-1071(4600)
286 cd01120 RecA-like_NTPases RecA 97.7 0.00024 5.1E-09 66.1 10.0 24 381-404 1-24 (165)
287 COG4088 Predicted nucleotide k 97.7 0.0005 1.1E-08 68.7 12.6 28 379-406 1-28 (261)
288 PHA02624 large T antigen; Prov 97.7 0.00014 3.1E-09 82.7 9.8 102 381-517 433-560 (647)
289 PF07693 KAP_NTPase: KAP famil 97.7 0.0041 8.9E-08 65.6 19.9 42 365-406 3-47 (325)
290 PF00493 MCM: MCM2/3/5 family 97.6 5.6E-05 1.2E-09 81.2 5.5 63 461-523 122-212 (331)
291 COG1466 HolA DNA polymerase II 97.6 0.011 2.5E-07 63.5 23.1 160 462-628 76-250 (334)
292 KOG2543 Origin recognition com 97.6 0.0011 2.3E-08 71.7 14.5 218 358-581 6-247 (438)
293 PF06309 Torsin: Torsin; Inte 97.6 0.00026 5.7E-09 65.7 8.4 50 358-407 25-81 (127)
294 TIGR02688 conserved hypothetic 97.6 0.00058 1.3E-08 75.2 12.2 113 351-500 184-313 (449)
295 KOG0480 DNA replication licens 97.6 0.001 2.2E-08 75.5 14.0 147 357-521 344-531 (764)
296 KOG0482 DNA replication licens 97.5 0.00065 1.4E-08 75.3 11.5 170 358-550 342-585 (721)
297 KOG2228 Origin recognition com 97.5 0.0018 4E-08 68.9 14.1 155 360-532 26-219 (408)
298 PRK13695 putative NTPase; Prov 97.5 0.0012 2.6E-08 63.8 11.9 67 460-529 96-169 (174)
299 COG4650 RtcR Sigma54-dependent 97.5 0.00027 5.9E-09 73.7 7.5 103 368-486 198-308 (531)
300 COG5271 MDN1 AAA ATPase contai 97.5 0.0071 1.5E-07 74.6 19.7 143 379-549 1543-1716(4600)
301 PRK15455 PrkA family serine pr 97.4 0.00018 3.8E-09 81.8 5.7 53 353-405 71-129 (644)
302 PF12780 AAA_8: P-loop contain 97.4 0.0033 7.2E-08 65.8 14.7 153 359-534 9-212 (268)
303 PF05272 VirE: Virulence-assoc 97.4 0.0009 1.9E-08 66.9 9.8 100 381-518 54-169 (198)
304 PRK04296 thymidine kinase; Pro 97.4 0.00058 1.3E-08 67.5 8.2 25 381-405 4-28 (190)
305 PF02562 PhoH: PhoH-like prote 97.3 0.001 2.2E-08 66.8 9.7 37 460-499 119-155 (205)
306 TIGR02858 spore_III_AA stage I 97.3 0.0011 2.5E-08 69.3 10.2 35 370-404 102-136 (270)
307 PF10923 DUF2791: P-loop Domai 97.3 0.017 3.7E-07 63.9 19.4 91 463-553 242-373 (416)
308 COG2909 MalT ATP-dependent tra 97.3 0.032 7E-07 65.7 22.3 174 353-553 14-225 (894)
309 PF09848 DUF2075: Uncharacteri 97.3 0.0011 2.4E-08 71.6 9.8 23 381-403 3-25 (352)
310 KOG1051 Chaperone HSP104 and r 97.2 0.0022 4.8E-08 76.3 12.5 180 357-550 185-385 (898)
311 cd00046 DEXDc DEAD-like helica 97.2 0.0023 5E-08 56.9 9.8 26 380-405 1-26 (144)
312 TIGR01448 recD_rel helicase, p 97.2 0.0029 6.3E-08 74.8 13.1 114 363-499 325-452 (720)
313 smart00487 DEXDc DEAD-like hel 97.2 0.0068 1.5E-07 57.4 13.0 40 462-501 131-171 (201)
314 KOG4658 Apoptotic ATPase [Sign 97.2 0.0096 2.1E-07 71.9 16.9 205 361-591 161-384 (889)
315 PTZ00202 tuzin; Provisional 97.1 0.038 8.3E-07 61.5 19.8 51 353-403 257-310 (550)
316 COG1485 Predicted ATPase [Gene 97.1 0.0062 1.3E-07 65.4 13.2 117 378-519 64-204 (367)
317 cd01124 KaiC KaiC is a circadi 97.1 0.0045 9.8E-08 59.8 10.6 22 382-403 2-23 (187)
318 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0037 8E-08 64.1 10.1 23 382-404 2-24 (249)
319 PF13207 AAA_17: AAA domain; P 97.0 0.00055 1.2E-08 61.6 3.4 22 382-403 2-23 (121)
320 PF05970 PIF1: PIF1-like helic 97.0 0.0026 5.7E-08 69.2 9.2 43 363-405 6-48 (364)
321 cd01128 rho_factor Transcripti 97.0 0.0034 7.5E-08 64.9 9.5 26 379-404 16-41 (249)
322 PRK09376 rho transcription ter 97.0 0.0034 7.3E-08 68.8 9.8 26 380-405 170-195 (416)
323 PF04665 Pox_A32: Poxvirus A32 97.0 0.02 4.2E-07 59.1 14.9 68 461-529 99-167 (241)
324 TIGR01613 primase_Cterm phage/ 97.0 0.002 4.3E-08 68.3 7.8 131 358-518 48-203 (304)
325 PRK14528 adenylate kinase; Pro 97.0 0.014 3.1E-07 57.4 13.3 24 380-403 2-25 (186)
326 PRK08118 topology modulation p 97.0 0.0035 7.5E-08 60.8 8.7 25 380-404 2-26 (167)
327 PRK05703 flhF flagellar biosyn 96.9 0.016 3.6E-07 64.4 15.0 24 381-404 223-246 (424)
328 PRK12723 flagellar biosynthesi 96.9 0.01 2.2E-07 65.2 13.1 24 381-404 176-199 (388)
329 PF00519 PPV_E1_C: Papillomavi 96.9 0.0045 9.8E-08 67.3 9.9 115 368-519 250-383 (432)
330 cd01129 PulE-GspE PulE/GspE Th 96.9 0.011 2.3E-07 61.7 12.4 50 354-404 56-105 (264)
331 TIGR02237 recomb_radB DNA repa 96.9 0.0073 1.6E-07 59.9 10.6 24 381-404 14-37 (209)
332 PRK13900 type IV secretion sys 96.9 0.032 6.9E-07 60.2 16.0 43 360-404 143-185 (332)
333 TIGR01618 phage_P_loop phage n 96.8 0.0017 3.7E-08 66.0 5.7 21 381-401 14-34 (220)
334 PF10236 DAP3: Mitochondrial r 96.8 0.058 1.3E-06 57.6 17.6 48 513-560 258-308 (309)
335 cd03283 ABC_MutS-like MutS-lik 96.8 0.0099 2.1E-07 59.3 10.8 24 380-403 26-49 (199)
336 PRK10875 recD exonuclease V su 96.8 0.012 2.5E-07 68.4 12.9 36 462-500 267-302 (615)
337 KOG1808 AAA ATPase containing 96.8 0.0064 1.4E-07 76.8 11.2 144 360-532 419-599 (1856)
338 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.014 2.9E-07 56.6 11.3 22 382-403 2-23 (183)
339 PF13086 AAA_11: AAA domain; P 96.8 0.0035 7.5E-08 61.9 7.2 38 364-403 4-41 (236)
340 PF05707 Zot: Zonular occluden 96.8 0.0024 5.1E-08 63.3 6.0 52 460-512 79-138 (193)
341 PF13671 AAA_33: AAA domain; P 96.8 0.00095 2.1E-08 61.7 3.0 22 382-403 2-23 (143)
342 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0058 1.2E-07 58.0 8.4 23 381-403 27-49 (157)
343 PRK13889 conjugal transfer rel 96.8 0.016 3.5E-07 70.5 13.9 116 362-499 347-470 (988)
344 PRK14532 adenylate kinase; Pro 96.8 0.028 6.1E-07 54.8 13.4 23 381-403 2-24 (188)
345 PF08433 KTI12: Chromatin asso 96.7 0.011 2.4E-07 61.9 11.0 26 380-405 2-27 (270)
346 PRK14974 cell division protein 96.7 0.021 4.5E-07 61.7 13.3 24 381-404 142-165 (336)
347 cd03214 ABC_Iron-Siderophores_ 96.7 0.0084 1.8E-07 58.4 9.5 53 461-514 116-171 (180)
348 KOG2383 Predicted ATPase [Gene 96.7 0.01 2.2E-07 64.6 10.8 57 463-519 196-267 (467)
349 PRK11889 flhF flagellar biosyn 96.7 0.025 5.3E-07 62.3 13.8 27 380-406 242-268 (436)
350 PHA02530 pseT polynucleotide k 96.7 0.014 3.1E-07 61.1 11.8 23 381-403 4-26 (300)
351 PRK06762 hypothetical protein; 96.7 0.011 2.3E-07 56.5 10.0 23 381-403 4-26 (166)
352 COG4619 ABC-type uncharacteriz 96.7 0.0097 2.1E-07 58.1 9.4 23 381-403 31-53 (223)
353 TIGR02768 TraA_Ti Ti-type conj 96.7 0.013 2.9E-07 69.6 12.4 115 362-499 353-476 (744)
354 TIGR01447 recD exodeoxyribonuc 96.6 0.014 3E-07 67.5 11.8 35 462-499 261-295 (586)
355 cd01394 radB RadB. The archaea 96.6 0.02 4.2E-07 57.3 11.4 35 370-404 8-44 (218)
356 cd03247 ABCC_cytochrome_bd The 96.6 0.012 2.6E-07 57.1 9.5 43 461-503 117-160 (178)
357 TIGR00767 rho transcription te 96.6 0.012 2.6E-07 64.8 10.2 26 379-404 168-193 (415)
358 PRK13808 adenylate kinase; Pro 96.6 0.033 7E-07 60.1 13.3 23 381-403 2-24 (333)
359 KOG0481 DNA replication licens 96.6 0.02 4.3E-07 64.0 11.7 132 359-512 332-506 (729)
360 PF00270 DEAD: DEAD/DEAH box h 96.6 0.069 1.5E-06 50.3 14.2 22 380-401 15-36 (169)
361 PF13238 AAA_18: AAA domain; P 96.6 0.0019 4.2E-08 58.0 3.4 22 382-403 1-22 (129)
362 PRK09361 radB DNA repair and r 96.5 0.019 4.1E-07 57.8 10.9 35 370-404 12-48 (225)
363 PRK12727 flagellar biosynthesi 96.5 0.017 3.7E-07 65.6 11.5 23 381-403 352-374 (559)
364 PF13245 AAA_19: Part of AAA d 96.5 0.0032 6.9E-08 53.3 4.4 24 380-403 11-34 (76)
365 PRK00131 aroK shikimate kinase 96.5 0.0023 4.9E-08 60.9 3.9 24 380-403 5-28 (175)
366 TIGR02533 type_II_gspE general 96.5 0.024 5.1E-07 64.2 12.7 51 353-404 217-267 (486)
367 PRK14722 flhF flagellar biosyn 96.5 0.023 5E-07 62.1 12.2 23 381-403 139-161 (374)
368 cd03228 ABCC_MRP_Like The MRP 96.5 0.013 2.7E-07 56.7 9.1 44 460-503 114-158 (171)
369 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.011 2.4E-07 59.6 9.0 22 380-401 30-51 (213)
370 PRK07261 topology modulation p 96.5 0.007 1.5E-07 58.8 7.3 23 381-403 2-24 (171)
371 PRK00625 shikimate kinase; Pro 96.5 0.022 4.8E-07 55.7 10.8 23 381-403 2-24 (173)
372 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.017 3.7E-07 54.4 9.7 102 381-503 28-130 (144)
373 PRK12339 2-phosphoglycerate ki 96.5 0.069 1.5E-06 53.4 14.4 23 381-403 5-27 (197)
374 PRK14527 adenylate kinase; Pro 96.5 0.055 1.2E-06 53.2 13.6 24 380-403 7-30 (191)
375 KOG0479 DNA replication licens 96.5 0.029 6.2E-07 63.6 12.5 141 359-521 302-487 (818)
376 PRK00091 miaA tRNA delta(2)-is 96.5 0.018 3.9E-07 61.4 10.7 26 380-405 5-30 (307)
377 PRK06067 flagellar accessory p 96.5 0.027 5.9E-07 57.1 11.6 34 370-403 14-49 (234)
378 COG2804 PulE Type II secretory 96.5 0.034 7.4E-07 62.4 13.1 54 353-407 233-286 (500)
379 PRK10078 ribose 1,5-bisphospho 96.5 0.0087 1.9E-07 58.6 7.6 23 381-403 4-26 (186)
380 PRK11823 DNA repair protein Ra 96.5 0.018 3.8E-07 64.6 10.9 37 368-404 67-105 (446)
381 cd03216 ABC_Carb_Monos_I This 96.5 0.0071 1.5E-07 58.1 6.8 23 381-403 28-50 (163)
382 PRK00771 signal recognition pa 96.4 0.038 8.1E-07 61.8 13.4 24 381-404 97-120 (437)
383 COG4178 ABC-type uncharacteriz 96.4 0.011 2.4E-07 67.9 9.2 42 460-501 533-575 (604)
384 TIGR00174 miaA tRNA isopenteny 96.4 0.024 5.3E-07 59.9 11.1 23 382-404 2-24 (287)
385 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0058 1.3E-07 60.0 5.9 23 381-403 27-49 (177)
386 cd02020 CMPK Cytidine monophos 96.4 0.053 1.2E-06 50.0 12.1 22 382-403 2-23 (147)
387 TIGR02538 type_IV_pilB type IV 96.3 0.034 7.5E-07 64.1 12.7 50 354-404 292-341 (564)
388 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.038 8.2E-07 53.5 10.9 44 459-502 94-140 (159)
389 PRK13947 shikimate kinase; Pro 96.3 0.0034 7.3E-08 60.1 3.7 26 380-406 2-27 (171)
390 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.031 6.8E-07 58.0 11.1 23 381-403 38-60 (259)
391 COG0464 SpoVK ATPases of the A 96.3 0.072 1.6E-06 60.2 14.8 161 377-562 16-192 (494)
392 cd00464 SK Shikimate kinase (S 96.3 0.0034 7.3E-08 58.7 3.4 23 381-403 1-23 (154)
393 PRK06547 hypothetical protein; 96.3 0.006 1.3E-07 59.6 5.2 34 370-403 6-39 (172)
394 TIGR02782 TrbB_P P-type conjug 96.2 0.0059 1.3E-07 64.8 5.4 39 364-404 119-157 (299)
395 PF00448 SRP54: SRP54-type pro 96.2 0.019 4.2E-07 57.2 8.8 24 381-404 3-26 (196)
396 cd03223 ABCD_peroxisomal_ALDP 96.2 0.029 6.2E-07 54.1 9.7 39 461-501 110-149 (166)
397 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0043 9.4E-08 60.0 3.8 25 379-403 3-27 (188)
398 PRK10436 hypothetical protein; 96.2 0.018 3.8E-07 64.8 9.1 50 354-404 194-243 (462)
399 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.2 0.073 1.6E-06 50.1 12.1 22 381-402 4-25 (166)
400 PRK03839 putative kinase; Prov 96.2 0.0039 8.5E-08 60.5 3.4 23 381-403 2-24 (180)
401 cd01121 Sms Sms (bacterial rad 96.1 0.024 5.2E-07 62.1 9.7 36 369-404 70-107 (372)
402 PRK13826 Dtr system oriT relax 96.1 0.063 1.4E-06 65.9 14.0 114 363-499 383-505 (1102)
403 PF13479 AAA_24: AAA domain 96.1 0.0095 2.1E-07 59.9 6.0 19 381-399 5-23 (213)
404 COG5275 BRCT domain type II [G 96.1 0.002 4.4E-08 64.1 1.1 92 261-359 175-274 (276)
405 TIGR01313 therm_gnt_kin carboh 96.1 0.0035 7.5E-08 59.7 2.7 22 382-403 1-22 (163)
406 cd01868 Rab11_like Rab11-like. 96.1 0.059 1.3E-06 50.6 11.0 22 381-402 5-26 (165)
407 PRK08533 flagellar accessory p 96.1 0.055 1.2E-06 55.2 11.4 23 381-403 26-48 (230)
408 COG3598 RepA RecA-family ATPas 96.1 0.042 9.1E-07 58.5 10.5 77 367-456 79-156 (402)
409 PRK12608 transcription termina 96.1 0.0089 1.9E-07 65.2 5.7 29 377-405 131-159 (380)
410 cd03213 ABCG_EPDR ABCG transpo 96.1 0.016 3.5E-07 57.2 7.2 53 461-513 130-184 (194)
411 cd02019 NK Nucleoside/nucleoti 96.1 0.0061 1.3E-07 50.3 3.5 22 382-403 2-23 (69)
412 smart00175 RAB Rab subfamily o 96.0 0.045 9.8E-07 51.0 9.8 22 381-402 2-23 (164)
413 PF00437 T2SE: Type II/IV secr 96.0 0.0064 1.4E-07 63.0 4.4 53 354-406 100-154 (270)
414 cd01860 Rab5_related Rab5-rela 96.0 0.05 1.1E-06 50.8 10.1 21 382-402 4-24 (163)
415 PRK04220 2-phosphoglycerate ki 96.0 0.22 4.9E-06 53.0 15.9 26 378-403 90-116 (301)
416 PF09439 SRPRB: Signal recogni 96.0 0.05 1.1E-06 53.8 10.3 24 379-402 3-26 (181)
417 cd04119 RJL RJL (RabJ-Like) su 96.0 0.14 2.9E-06 47.8 13.0 21 382-402 3-23 (168)
418 TIGR00150 HI0065_YjeE ATPase, 96.0 0.0084 1.8E-07 56.3 4.7 23 381-403 24-46 (133)
419 PRK06696 uridine kinase; Valid 96.0 0.0099 2.1E-07 60.1 5.5 41 364-404 4-47 (223)
420 smart00174 RHO Rho (Ras homolo 96.0 0.057 1.2E-06 51.2 10.5 21 382-402 1-21 (174)
421 PRK14530 adenylate kinase; Pro 96.0 0.0055 1.2E-07 61.5 3.6 24 380-403 4-27 (215)
422 TIGR02760 TraI_TIGR conjugativ 96.0 0.077 1.7E-06 69.2 14.7 122 357-499 425-566 (1960)
423 PF01443 Viral_helicase1: Vira 96.0 0.0065 1.4E-07 60.9 4.0 22 382-403 1-22 (234)
424 cd02021 GntK Gluconate kinase 96.0 0.0051 1.1E-07 57.7 3.1 22 382-403 2-23 (150)
425 COG1936 Predicted nucleotide k 96.0 0.017 3.7E-07 56.4 6.6 25 381-407 2-26 (180)
426 cd04106 Rab23_lke Rab23-like s 96.0 0.077 1.7E-06 49.5 11.0 21 382-402 3-23 (162)
427 cd01861 Rab6 Rab6 subfamily. 96.0 0.054 1.2E-06 50.5 9.9 22 381-402 2-23 (161)
428 COG5245 DYN1 Dynein, heavy cha 95.9 0.095 2.1E-06 64.9 13.7 131 379-531 1494-1657(3164)
429 PRK13709 conjugal transfer nic 95.9 0.11 2.4E-06 66.6 15.2 117 366-499 972-1099(1747)
430 cd04122 Rab14 Rab14 subfamily. 95.9 0.089 1.9E-06 49.7 11.3 21 382-402 5-25 (166)
431 COG2842 Uncharacterized ATPase 95.9 0.14 2.9E-06 54.1 13.3 186 350-564 63-274 (297)
432 cd04110 Rab35 Rab35 subfamily. 95.9 0.061 1.3E-06 53.0 10.5 22 381-402 8-29 (199)
433 PRK14712 conjugal transfer nic 95.9 0.14 3.1E-06 64.9 15.8 86 460-564 930-1024(1623)
434 cd01130 VirB11-like_ATPase Typ 95.9 0.012 2.6E-07 57.8 5.3 39 364-404 12-50 (186)
435 PLN02674 adenylate kinase 95.9 0.29 6.2E-06 50.7 15.6 25 379-403 31-55 (244)
436 PRK14531 adenylate kinase; Pro 95.9 0.0066 1.4E-07 59.4 3.4 23 381-403 4-26 (183)
437 cd00227 CPT Chloramphenicol (C 95.9 0.0067 1.4E-07 58.8 3.4 24 381-404 4-27 (175)
438 PLN02840 tRNA dimethylallyltra 95.9 0.15 3.3E-06 56.6 14.3 25 381-405 23-47 (421)
439 PRK12337 2-phosphoglycerate ki 95.9 0.063 1.4E-06 60.1 11.4 25 379-403 255-279 (475)
440 KOG3347 Predicted nucleotide k 95.9 0.0064 1.4E-07 58.1 3.0 28 378-406 6-33 (176)
441 cd04113 Rab4 Rab4 subfamily. 95.8 0.086 1.9E-06 49.3 10.8 22 381-402 2-23 (161)
442 cd01867 Rab8_Rab10_Rab13_like 95.8 0.071 1.5E-06 50.5 10.3 22 381-402 5-26 (167)
443 cd03246 ABCC_Protease_Secretio 95.8 0.068 1.5E-06 51.7 10.3 23 381-403 30-52 (173)
444 cd00876 Ras Ras family. The R 95.8 0.087 1.9E-06 48.6 10.5 21 382-402 2-22 (160)
445 PRK02496 adk adenylate kinase; 95.8 0.0074 1.6E-07 58.8 3.4 23 381-403 3-25 (184)
446 cd01428 ADK Adenylate kinase ( 95.8 0.0071 1.5E-07 58.9 3.2 22 382-403 2-23 (194)
447 cd03227 ABC_Class2 ABC-type Cl 95.8 0.075 1.6E-06 51.0 10.2 24 381-404 23-46 (162)
448 smart00534 MUTSac ATPase domai 95.8 0.05 1.1E-06 53.4 9.2 20 382-401 2-21 (185)
449 PF08298 AAA_PrkA: PrkA AAA do 95.8 0.016 3.5E-07 62.6 6.1 49 357-405 59-114 (358)
450 PLN03071 GTP-binding nuclear p 95.8 0.093 2E-06 52.8 11.3 21 381-401 15-35 (219)
451 cd03243 ABC_MutS_homologs The 95.8 0.049 1.1E-06 54.1 9.2 22 381-402 31-52 (202)
452 cd01878 HflX HflX subfamily. 95.8 0.34 7.3E-06 47.6 15.1 25 378-402 40-64 (204)
453 COG3899 Predicted ATPase [Gene 95.8 0.24 5.2E-06 59.9 16.6 108 461-569 155-268 (849)
454 cd01864 Rab19 Rab19 subfamily. 95.7 0.079 1.7E-06 49.9 10.1 21 381-401 5-25 (165)
455 cd04132 Rho4_like Rho4-like su 95.7 0.071 1.5E-06 51.4 9.7 22 381-402 2-23 (187)
456 TIGR01587 cas3_core CRISPR-ass 95.7 0.079 1.7E-06 56.9 11.0 22 382-403 2-23 (358)
457 cd04124 RabL2 RabL2 subfamily. 95.7 0.081 1.8E-06 50.0 9.9 22 381-402 2-23 (161)
458 PRK13949 shikimate kinase; Pro 95.7 0.0096 2.1E-07 57.9 3.6 23 381-403 3-25 (169)
459 cd03230 ABC_DR_subfamily_A Thi 95.7 0.013 2.8E-07 56.7 4.5 23 381-403 28-50 (173)
460 PRK08233 hypothetical protein; 95.7 0.0081 1.7E-07 57.8 3.0 23 381-403 5-27 (182)
461 cd04105 SR_beta Signal recogni 95.6 0.066 1.4E-06 53.3 9.6 23 380-402 1-23 (203)
462 cd00154 Rab Rab family. Rab G 95.6 0.093 2E-06 47.9 10.0 22 381-402 2-23 (159)
463 PRK05541 adenylylsulfate kinas 95.6 0.0097 2.1E-07 57.5 3.5 24 381-404 9-32 (176)
464 PF00071 Ras: Ras family; Int 95.6 0.18 3.9E-06 47.0 12.1 21 382-402 2-22 (162)
465 cd03287 ABC_MSH3_euk MutS3 hom 95.6 0.055 1.2E-06 55.1 9.0 21 381-401 33-53 (222)
466 COG1100 GTPase SAR1 and relate 95.6 0.085 1.8E-06 52.2 10.1 117 381-504 7-125 (219)
467 PRK14709 hypothetical protein; 95.6 0.14 3E-06 57.9 12.9 134 358-519 177-334 (469)
468 PRK14529 adenylate kinase; Pro 95.6 0.11 2.4E-06 53.0 11.0 24 381-404 2-25 (223)
469 PRK05800 cobU adenosylcobinami 95.6 0.069 1.5E-06 52.1 9.2 23 381-403 3-25 (170)
470 cd03239 ABC_SMC_head The struc 95.6 0.084 1.8E-06 51.7 9.9 55 460-516 116-172 (178)
471 PRK13833 conjugal transfer pro 95.6 0.019 4.2E-07 61.6 5.8 37 365-403 132-168 (323)
472 PF04851 ResIII: Type III rest 95.6 0.022 4.7E-07 54.1 5.6 43 363-405 8-51 (184)
473 COG2884 FtsE Predicted ATPase 95.6 0.086 1.9E-06 52.6 9.7 56 461-517 156-213 (223)
474 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.11 2.4E-06 52.3 11.0 23 381-403 21-43 (235)
475 cd03280 ABC_MutS2 MutS2 homolo 95.5 0.065 1.4E-06 53.1 9.1 20 381-400 30-49 (200)
476 PRK14729 miaA tRNA delta(2)-is 95.5 0.24 5.2E-06 52.8 13.9 25 380-405 5-29 (300)
477 TIGR02322 phosphon_PhnN phosph 95.5 0.01 2.2E-07 57.5 3.2 24 381-404 3-26 (179)
478 COG4608 AppF ABC-type oligopep 95.5 0.061 1.3E-06 56.1 9.1 23 381-403 41-63 (268)
479 cd01125 repA Hexameric Replica 95.5 0.12 2.5E-06 52.8 11.1 48 382-435 4-52 (239)
480 COG1102 Cmk Cytidylate kinase 95.5 0.0094 2E-07 57.7 2.9 25 382-407 3-27 (179)
481 cd01863 Rab18 Rab18 subfamily. 95.5 0.16 3.4E-06 47.4 11.2 21 382-402 3-23 (161)
482 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 95.5 0.19 4.2E-06 51.1 12.4 21 382-402 4-24 (222)
483 cd04115 Rab33B_Rab33A Rab33B/R 95.5 0.091 2E-06 50.0 9.6 21 381-401 4-24 (170)
484 PF08303 tRNA_lig_kinase: tRNA 95.5 0.31 6.7E-06 47.5 13.0 20 385-405 5-24 (168)
485 PRK13894 conjugal transfer ATP 95.5 0.022 4.7E-07 61.1 5.7 37 365-403 136-172 (319)
486 cd01852 AIG1 AIG1 (avrRpt2-ind 95.4 0.28 6.1E-06 48.2 13.1 22 381-402 2-23 (196)
487 PRK04040 adenylate kinase; Pro 95.4 0.012 2.6E-07 58.3 3.3 23 381-403 4-26 (188)
488 PRK12726 flagellar biosynthesi 95.4 0.19 4.1E-06 55.3 12.6 24 381-404 208-231 (407)
489 cd04117 Rab15 Rab15 subfamily. 95.4 0.11 2.4E-06 49.1 9.8 21 381-401 2-22 (161)
490 COG0563 Adk Adenylate kinase a 95.4 0.013 2.8E-07 57.7 3.3 23 381-403 2-24 (178)
491 PRK06217 hypothetical protein; 95.4 0.012 2.7E-07 57.4 3.2 23 381-403 3-25 (183)
492 PRK12724 flagellar biosynthesi 95.3 0.14 3E-06 57.0 11.5 23 381-403 225-247 (432)
493 PF13521 AAA_28: AAA domain; P 95.3 0.013 2.7E-07 56.0 3.1 21 382-402 2-22 (163)
494 PRK14721 flhF flagellar biosyn 95.3 0.29 6.2E-06 54.6 14.1 23 381-403 193-215 (420)
495 PRK00279 adk adenylate kinase; 95.3 0.013 2.8E-07 58.7 3.4 23 381-403 2-24 (215)
496 cd03231 ABC_CcmA_heme_exporter 95.3 0.051 1.1E-06 53.8 7.6 23 381-403 28-50 (201)
497 PRK13851 type IV secretion sys 95.3 0.02 4.4E-07 62.0 5.0 38 364-403 149-186 (344)
498 PRK10263 DNA translocase FtsK; 95.3 0.15 3.4E-06 62.9 12.8 68 463-530 1143-1218(1355)
499 COG1419 FlhF Flagellar GTP-bin 95.3 0.27 5.8E-06 54.2 13.4 40 364-403 184-227 (407)
500 TIGR01351 adk adenylate kinase 95.3 0.013 2.8E-07 58.5 3.2 22 382-403 2-23 (210)
No 1
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.6e-43 Score=356.29 Aligned_cols=281 Identities=34% Similarity=0.584 Sum_probs=261.1
Q ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCC---------CCCccc
Q 036742 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNE---------KWPTQV 417 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~---------~~~~~v 417 (629)
+|.+||||++|+.++++++....|+.+...+..||+|||||+|.||.|.+.++.++++|.+.++- ....++
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999876651 222458
Q ss_pred cccccCCcceEEEeccc-chhhHHHHHHHHHHHHHHhccCcCCC--CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEE
Q 036742 418 LVPVASSAHHVELNVNL-QANAKYALMGLVKEIRDNLAITPEVS--NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLI 494 (629)
Q Consensus 418 ~~~i~sS~~vleInas~-~~~~k~~l~~~lrei~~~~~~~~~~~--~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~I 494 (629)
++..++|.+++|+++++ +..+..+++++++++.+..+.....+ .+|++|.|+|.|+.++|++|++.||.|..++++|
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 99999999999999975 55667788999999998877665543 4699999999999999999999999999999999
Q ss_pred EEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC
Q 036742 495 LCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD 574 (629)
Q Consensus 495 LitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~ 574 (629)
++||..+.|.++|+|||..++++.|+++++..+|..++.++++.++.+.+..|++.++||+|+||-+|++++..++.+..
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a 241 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA 241 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred C-CCCc-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 575 D-QPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 575 ~-~~~~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
+ +.++ .+|+..+.+++..++.++++..|.++|+.+|+||.+|+||.+||+.|.
T Consensus 242 ~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll 296 (351)
T KOG2035|consen 242 NSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELL 296 (351)
T ss_pred cCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 5 6666 899999999999999999999999999999999999999999999885
No 2
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=3e-39 Score=318.70 Aligned_cols=231 Identities=21% Similarity=0.407 Sum_probs=204.8
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
...+|++||||..+.||+|+++.++.|+.+.+.|+.||++|.|||||||||.+.++|++|.|..+.+
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke------------- 79 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKE------------- 79 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhh-------------
Confidence 3456999999999999999999999999999999999999999999999999999999999875422
Q ss_pred CcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742 424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503 (629)
Q Consensus 424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I 503 (629)
-++|+|+++.+|++ ++...++.+.+.....+.+..+|||+||+|.|+.++|.+|++.||-|+..++|+|+||...+|
T Consensus 80 --~vLELNASdeRGID-vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KI 156 (333)
T KOG0991|consen 80 --AVLELNASDERGID-VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKI 156 (333)
T ss_pred --HhhhccCccccccH-HHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhh
Confidence 28999999999984 455555555555556667888999999999999999999999999999999999999999999
Q ss_pred hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--------CCC
Q 036742 504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF--------ADD 575 (629)
Q Consensus 504 ~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~--------~~~ 575 (629)
.++|.|||.+++|..+++.++..+|..+++.|++.++++.+++|+..+.||+|+++|.||.+.. ++.+ ..+
T Consensus 157 iEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~-g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 157 IEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVN-GFGLVNQENVFKVCD 235 (333)
T ss_pred hhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhc-cccccchhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999998764 3322 257
Q ss_pred CCCchhHHHHHHHHHH
Q 036742 576 QPIPLGWEEVLIELAA 591 (629)
Q Consensus 576 ~~~~~~~ek~l~ei~~ 591 (629)
+|.|..+++.+..+..
T Consensus 236 ~PhP~~v~~ml~~~~~ 251 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK 251 (333)
T ss_pred CCChHHHHHHHHHHHh
Confidence 7888777777765543
No 3
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-38 Score=325.22 Aligned_cols=261 Identities=20% Similarity=0.358 Sum_probs=212.8
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
.+.|++||||++|+|++||+.++..|+..+..+..||+|||||||||||++|+++|++|+|+...+
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~-------------- 88 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFP-------------- 88 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccc--------------
Confidence 456999999999999999999999999999998899999999999999999999999999966533
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhccCc------CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITP------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
..++++|+++.+|+. ++.+.++.+.+...... ....+||||||+|.|+.++|++|+++||.++..++|||+||
T Consensus 89 ~rvl~lnaSderGis-vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 89 CRVLELNASDERGIS-VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred cchhhhccccccccc-chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcC
Confidence 238999999999975 33333333332222211 11236999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFAD---- 574 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~---- 574 (629)
..+.|+.+|.|||..+.|+++.++.+..+|+.||.+||+.+++++++.|+..++||+|+|+.+||.+...+..+..
T Consensus 168 ylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~ 247 (346)
T KOG0989|consen 168 YLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVN 247 (346)
T ss_pred ChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876554431
Q ss_pred ---CCCCchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 575 ---DQPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 575 ---~~~~~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
....+ .+.+.++....+..+++.... ...+++..+..|-.++.+||
T Consensus 248 e~~~GvVp---~~~l~~lle~a~S~d~~~~v~----~~Rei~~sg~~~~~lmsQLa 296 (346)
T KOG0989|consen 248 EELAGVVP---DEKLLDLLELALSADTPNTVK----RVREIMRSGYSPLQLMSQLA 296 (346)
T ss_pred HHHhccCC---HHHHHHHHHHHHccChHHHHH----HHHHHHHhccCHHHHHHHHH
Confidence 11111 233445555555555554443 34478888888888888876
No 4
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=313.94 Aligned_cols=262 Identities=18% Similarity=0.315 Sum_probs=209.9
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
.+|++||||.+|+|++||+++++.|+.++..+..||+||+||||||||++|+++|++++|..+ ..
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~---------------~~ 65 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY---------------KE 65 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC---------------cc
Confidence 379999999999999999999999999999999999999999999999999999999977643 12
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchH
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~ 505 (629)
.++++|+++.++.. .+.+.++..............+||||||+|.|+..++++|++++|.+...++||++||....+.+
T Consensus 66 ~~~eln~sd~~~~~-~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~ 144 (319)
T PLN03025 66 AVLELNASDDRGID-VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIE 144 (319)
T ss_pred ceeeecccccccHH-HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccch
Confidence 37899998777653 23333333322211112234679999999999999999999999999999999999999999999
Q ss_pred HHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCC---CCchhH
Q 036742 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ---PIPLGW 582 (629)
Q Consensus 506 aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~---~~~~~~ 582 (629)
+|++||..++|.+++.+++..+|..+|.++|+.++++++.+|++.++||+|.+++.||.+......+.... ......
T Consensus 145 ~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~ 224 (319)
T PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPH 224 (319)
T ss_pred hHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999997654311111000 000111
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 583 EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 583 ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
...+.++...+..+ .+...+..+++++..+.++..|+..|.
T Consensus 225 ~~~i~~~i~~~~~~----~~~~a~~~l~~ll~~g~~~~~Il~~l~ 265 (319)
T PLN03025 225 PLHVKNIVRNCLKG----KFDDACDGLKQLYDLGYSPTDIITTLF 265 (319)
T ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33455555554443 356677889999999999999998774
No 5
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.5e-33 Score=305.32 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=214.3
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccc
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVL 418 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~ 418 (629)
..+.|++||||++|+||+||++++..|+.++..+..+| +||+||+||||||+|+++|+.++|..... ..|..|..
T Consensus 4 ~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred CcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 35779999999999999999999999999999999987 79999999999999999999998753111 12333444
Q ss_pred ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742 419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC 497 (629)
Q Consensus 419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit 497 (629)
+....+..++++++....++ +.++++....... ..+..+|+||||||.|+.+++++|++++|+++..+.||++|
T Consensus 84 i~~g~~~dviEIdaas~~gV-----d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGI-----ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred HHccCCccceeechhhcccH-----HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 45555667889998655554 3345544433322 23456799999999999999999999999999999999999
Q ss_pred cCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCC
Q 036742 498 EDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577 (629)
Q Consensus 498 N~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~ 577 (629)
+....|.++|+|||+.+.|.+++.+++.++|.++|.++|+.++++++..|++.++||+|.|+++|+.+..... +..
T Consensus 159 te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~----~~i 234 (484)
T PRK14956 159 TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTD----SKL 234 (484)
T ss_pred CChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCC----CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987543221 111
Q ss_pred CchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742 578 IPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628 (629)
Q Consensus 578 ~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~ 628 (629)
+...+ .+.+.++.+.+...+.... ....+..++..+.++..++.+|..
T Consensus 235 t~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~---al~~l~~l~~~G~d~~~~~~~l~~ 290 (484)
T PRK14956 235 TGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSK---SLEILESLYQEGQDIYKFLWDSIE 290 (484)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHH---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22222 2334555665555443221 224466788888899888877753
No 6
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.3e-33 Score=313.02 Aligned_cols=273 Identities=15% Similarity=0.178 Sum_probs=206.3
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---ccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~ 419 (629)
.+.|++||||++|+||+||+++++.|+.++..++++|. ||+||+||||||+|++||+.++|..... ..|..| ..+
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 45689999999999999999999999999999999886 8999999999999999999998753211 122223 332
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.-.....++++++...+++ +.++++++...... ...++||||||+|.|+...+++|+++||+++.++.|||+||
T Consensus 83 ~~G~h~DviEIDAas~rgV-----DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGV-----DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred hcCCCceEEEecccccccH-----HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 2223446888988766654 33444444433222 34568999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCCCC-
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PFADDQ- 576 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~-~~~~~~- 576 (629)
+..+|+++|+|||+.|.|.+++.+++.++|.+++.++++.++++.+..|++.++||+|++|++|+.+...+. .+....
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V 237 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAV 237 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999866443322 111100
Q ss_pred -C-Cc-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 577 -P-IP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 577 -~-~~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
. +. .+ .+.+.++...++.++. ..++..+.+++..+.+...++.+|.
T Consensus 238 ~~~LG~~d-~~~i~~ll~aL~~~d~----~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 238 SGMLGALD-QTYMVRLLDALAAGDG----PEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred HHHhCCCC-HHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0 00 11 2335556655555432 2233445566666666666666553
No 7
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.6e-32 Score=303.67 Aligned_cols=270 Identities=15% Similarity=0.183 Sum_probs=215.3
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCC---ccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWP---TQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~---~~v~~ 419 (629)
.+.|++||||++|+||+||+++++.|+.++..++.+| +||+||+|||||++|+++|+.++|..... ..|. .|..+
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 4679999999999999999999999999999999998 58999999999999999999998764221 1222 33333
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.......++++++....++ +.++++.......+ .+..+|+||||+|.|+..++++|++++|+++..+.|||+|+
T Consensus 83 ~~g~~~d~~eidaas~~~v-----~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKV-----EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred hcCCCceEEEEcccccCCH-----HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3445566899998655554 34566665544433 34678999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
++.++..+|++||..++|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+.+...+ .+..+
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~----~~~It 233 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYG----NGKVL 233 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC----CCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999997665432 22223
Q ss_pred chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++ +..+.+++..+..++... ....+.+++..+.++..|+.+|.
T Consensus 234 ~~~V~~~lg~~~~~~i~~ll~al~~~d~~~----~l~~~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 234 IADVKTMLGTIEPLLLFDILEALAAKAGDR----LLGCVTRLVEQGVDFSNALADLL 286 (509)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3333 344455565555543322 33456778888888888877764
No 8
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.4e-32 Score=311.29 Aligned_cols=270 Identities=16% Similarity=0.188 Sum_probs=204.4
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~ 419 (629)
.+.|++||||.+|+||+||+++++.|+.++..++++|. ||+||+|||||++|++||+.++|..... ..|..|..+
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 46799999999999999999999999999999999996 8999999999999999999998763211 112223333
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.-.....++++++....++ +.++++...+.... .+..+||||||+|.|+.+++++|+++||+++..++||++|+
T Consensus 83 ~~g~~~DviEidAas~~kV-----DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKV-----DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred hcCCCceEEEeccccccCH-----HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 3333445678877544443 33455554443332 34668999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
+...|+++|+|||.++.|.+++.+++..+|..++..+++.++++++..|+..++|++|.++++|+.+...+. +...
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~----~~It 233 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGG----GQVM 233 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----Cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999976543221 1111
Q ss_pred chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
...+ ...+..+.+.+...+ +. .....+..++..+.++..|+..|.
T Consensus 234 ~~~V~~llG~iD~~~V~~llksI~~~D-~~---aaL~~l~~Ll~~G~D~~~ILr~Ll 286 (944)
T PRK14949 234 LTQVQTMLGSIDEQHVIALLKALTDAD-IG---VLMQTCAQVLAFGADAQEVLRSLL 286 (944)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCC-HH---HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1111 122444444443332 22 222334556677777777776653
No 9
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5e-32 Score=303.58 Aligned_cols=218 Identities=17% Similarity=0.199 Sum_probs=185.0
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCC------C---CCCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACW------N---EKWP 414 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~------~---~~~~ 414 (629)
.+.|++||||++|+||+||+++++.|++++..++++|. ||+||+|||||++|++||+.++|.... . ..|.
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 46799999999999999999999999999999999985 899999999999999999999874210 0 1122
Q ss_pred ccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEE
Q 036742 415 TQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL 493 (629)
Q Consensus 415 ~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ 493 (629)
.|..+.......++++++....++ +.++++++...... .+..+||||||+|.|+...+|+|+++||+++.++.|
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gV-----DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~F 157 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGV-----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCH-----HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceE
Confidence 333333334557889988655554 44566655544433 356789999999999999999999999999999999
Q ss_pred EEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742 494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567 (629)
Q Consensus 494 ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~ 567 (629)
||+||++.+|+++|+|||+.+.|.+++.+++.++|.+++.++++.++++.+..|++.++|++|.++++|+.+..
T Consensus 158 ILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 158 ILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA 231 (700)
T ss_pred EEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976443
No 10
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.98 E-value=6e-31 Score=296.76 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=205.0
Q ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccccc--
Q 036742 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVPVA-- 422 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~i~-- 422 (629)
.|++||||++|+||+||+++++.|+.++..|+++| +||+||+|||||++|+++|+.++|..... ..|..|-.|...
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 36799999999999999999999999999999999 58999999999999999999998753211 123333333322
Q ss_pred ---CCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 423 ---SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 423 ---sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.+..++++++....++ +.++++.......+ ...++|+||||+|.|+.+++++|+++||+++..+.|||+|+
T Consensus 82 ~~~~~~dvieidaas~~gv-----d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGV-----DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred ccCCCceEEEeccccccCH-----HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 3456888988655554 34455544433332 34567999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
.+.+|+++|+|||+.+.|.+++.+++.++|..+|.++|+.++++++..|++.++||+|.++++|+.+..... .+..+
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~---~~~It 233 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAA---DTHVT 233 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC---CCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999998765321 11112
Q ss_pred chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++ +..+.+++..+..++. ..+ ...+.+++..+.++..|+..|.
T Consensus 234 ~~~v~~llg~~~~~~i~~lv~al~~~d~-~~a---l~~l~~l~~~g~d~~~~l~~L~ 286 (584)
T PRK14952 234 YQRALGLLGATDVALIDDAVDALAADDA-AAL---FGAIESVIDAGHDPRRFATDLL 286 (584)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCCH-HHH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 2222 2234445444433332 222 2334555666667766666554
No 11
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.98 E-value=8e-31 Score=289.96 Aligned_cols=266 Identities=19% Similarity=0.239 Sum_probs=213.6
Q ss_pred hhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccccccc
Q 036742 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLVPVA 422 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~~i~ 422 (629)
|+.||||++|+||+||+.+++.|++++..|+.+ ++||+||+|+||||+|+++|+.++|..... ..|..|..+.-.
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~ 82 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhcc
Confidence 789999999999999999999999999999998 599999999999999999999987753211 233345555556
Q ss_pred CCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+..++++++....++ +.++++.......+ ....+|+||||+|.|+..++++|++++|+++..+.|||+|+...
T Consensus 83 ~~~Dv~eidaas~~~v-----ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 83 NHPDVIEIDAASNTSV-----DDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred CCCCEEEEecccCCCH-----HHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChH
Confidence 7788999999766665 34555555443333 24568999999999999999999999999999999999999999
Q ss_pred cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchh
Q 036742 502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLG 581 (629)
Q Consensus 502 ~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~ 581 (629)
++..+|++||+.+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+...+. +..+..+
T Consensus 158 Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~----~~It~e~ 233 (491)
T PRK14964 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSN----NKISEKS 233 (491)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988765432 1222233
Q ss_pred HH--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 582 WE--------EVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 582 ~e--------k~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
+. ..+.++...++.++....+ ..+.+++.. ..+..|+.+|.
T Consensus 234 V~~llg~~~~~~If~L~~aI~~~d~~~Al----~~l~~Ll~~-g~~~~i~~~l~ 282 (491)
T PRK14964 234 VRDLLGCVDKHILEDLVEAILLGDAQSAL----NVFRELCNT-SNPVIILEGML 282 (491)
T ss_pred HHHHHccCCHHHHHHHHHHHHCCCHHHHH----HHHHHHHhc-CCHHHHHHHHH
Confidence 33 3456777766666543333 345556554 46667777665
No 12
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.98 E-value=1.1e-30 Score=296.39 Aligned_cols=218 Identities=17% Similarity=0.205 Sum_probs=183.7
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCC-CCCCCcc---ccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACW-NEKWPTQ---VLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~-~~~~~~~---v~~ 419 (629)
.+.|++||||.+|+||+||+.+++.|++.+..|+++|. ||+||+||||||+|+++|+.++|.... ...|..| ..+
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 46789999999999999999999999999999999985 899999999999999999999885321 1122233 333
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.-.....++++++....++ +.++++...+.... .+..+|+||||+|.|+..++++|+++||+++..+.|||+|+
T Consensus 83 ~~g~~~D~ieidaas~~~V-----ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKV-----EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred HcCCCCCceeecccccCCH-----HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 3334456788887543343 34555555544432 35678999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~ 567 (629)
++..|+++|+|||..+.|.+++.+++..+|..++.++++.++++.+..|+..++|++|+|+++|+.+..
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia 226 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIA 226 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999976544
No 13
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.98 E-value=1e-30 Score=293.70 Aligned_cols=269 Identities=17% Similarity=0.208 Sum_probs=206.3
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---ccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~ 419 (629)
.+.|++||||++|+||+|++.+++.|..++..++.+|. ||+||+|||||++|+++|+.++|..... ..|..| ..+
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 35689999999999999999999999999999998865 8999999999999999999998753211 122233 333
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.......++++++....++ +.+++++....... .++++|+||||+|.|+..++++|++++|+++..+.|||+|+
T Consensus 82 ~~g~hpDviEIDAAs~~~V-----ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKV-----EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred hcCCCCceEEecccccCCH-----HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3344557889988655554 34555554443332 24568999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
++..+..+|++||..+.|.+++.+++.++|..++.++++.++++++..|++.++||+|.|+++|+.+...+ .+...
T Consensus 157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg----~g~IT 232 (702)
T PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYG----QGAVH 232 (702)
T ss_pred ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999997654432 12222
Q ss_pred chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742 579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626 (629)
Q Consensus 579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L 626 (629)
..++ ++.+.+++..+.++.....+ ..+.++...+.+...++..|
T Consensus 233 ~edV~~lLG~~d~e~IfdLldAI~k~d~~~al----~~L~el~~~g~d~~~~l~~L 284 (702)
T PRK14960 233 HQDVKEMLGLIDRTIIYDLILAVHQNQREKVS----QLLLQFRYQALDVSLVLDQL 284 (702)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCHHHHH----HHHHHHHHhCCCHHHHHHHH
Confidence 2232 23455666655555432222 33445555566666555544
No 14
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.98 E-value=6.6e-31 Score=297.53 Aligned_cols=270 Identities=16% Similarity=0.160 Sum_probs=213.4
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC------CCCC---
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN------EKWP--- 414 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~------~~~~--- 414 (629)
.+.|++||||++|+||+||+++++.|++++..++.+|. ||+||+||||||+|+++|+.++|..... ..|.
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 45699999999999999999999999999999999986 8999999999999999999998743110 1222
Q ss_pred ccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEE
Q 036742 415 TQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL 493 (629)
Q Consensus 415 ~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ 493 (629)
.|..+.......++++++....++ +.++++........ .+..+|+||||+|.|+...+++|++++|+++..+.|
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~V-----d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f 157 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGV-----DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF 157 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCH-----HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE
Confidence 333333345566888888655554 44566655544433 345689999999999999999999999999999999
Q ss_pred EEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 036742 494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573 (629)
Q Consensus 494 ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~ 573 (629)
||+|+++..++.+|++||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+.+...+.
T Consensus 158 IL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~--- 234 (618)
T PRK14951 158 VLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGS--- 234 (618)
T ss_pred EEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976544322
Q ss_pred CCCCCchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 574 DDQPIPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 574 ~~~~~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
+..+..++ +..+.++...+..++... +...+.+++..+.++..|+..|.
T Consensus 235 -~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~----al~~l~~l~~~G~~~~~il~~l~ 291 (618)
T PRK14951 235 -GQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRT----VVETADELRLNGLSAASTLEEMA 291 (618)
T ss_pred -CCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 22222222 344556666555554332 33446677788888888888775
No 15
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=1.7e-30 Score=302.71 Aligned_cols=215 Identities=14% Similarity=0.156 Sum_probs=182.2
Q ss_pred hhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccccc---
Q 036742 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVPVA--- 422 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~i~--- 422 (629)
|++||||.+|+|||||+.+++.|+.++..++++| +||+||+|||||++|++||+.|+|..... .-|..|-+|...
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g 84 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPG 84 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcC
Confidence 6699999999999999999999999999999998 68999999999999999999998853211 123344444332
Q ss_pred --CCcceEEEecccchhhHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 423 --SSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 423 --sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+..++++++....++ +.++++....... ....++||||||+|.|+.+.+++|+++||+++..+.|||+|+.
T Consensus 85 ~~~~~dv~eidaas~~~V-----d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGV-----DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred CCCCCcEEEecccccCCH-----HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 3456788887554454 4445554433322 2356789999999999999999999999999999999999999
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~ 567 (629)
.++|+++|+|||.+|.|.+++.+++..+|.++|.++++.++++.+..|++.++||+|.++++|+.+..
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia 227 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLA 227 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998664
No 16
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=1.9e-30 Score=293.68 Aligned_cols=270 Identities=17% Similarity=0.215 Sum_probs=212.4
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---ccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~ 419 (629)
.+.|++||||++|+||+||+++++.|+.++..++++| +||+||+|||||++|+++|+.++|..... ..|..| ..+
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 4568999999999999999999999999999999887 69999999999999999999998764221 112223 222
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.......++++++....++ +.+++++....... .+..+||||||+|.|+..++++|+++||+++..+.|||+|+
T Consensus 83 ~~g~~~DvlEidaAs~~gV-----d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGI-----DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred hccCccceEEEeccccCCH-----HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 3333445788887655554 34555554433222 23567999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
++..++.+|++||..|.|.+++.+++..+|..++.++|+.++++.+..|++.++||+|.++++|+.+...+. +...
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~----g~It 233 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGS----GKVA 233 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC----CCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999987655332 1222
Q ss_pred chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++ +..+.+++..++.++.. .+...+.+++..+++...++..|.
T Consensus 234 ~e~V~~lLG~~d~~~If~LldAL~~~d~~----~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 234 ENDVRQMIGAVDKQYLYELLTGIINQDGA----ALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 2222 33456666666655433 344556778888888888888775
No 17
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=4.1e-30 Score=284.64 Aligned_cols=270 Identities=15% Similarity=0.184 Sum_probs=210.6
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLVP 420 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~~ 420 (629)
+-|++||||++|+||+||+++++.|+.++..+..+| +||+|||||||||+|+++|+.+.|..... ..+..|..+.
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 468899999999999999999999999999999987 79999999999999999999987643211 1222344444
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
......++++++....++. .++++.......+ ....+||||||+|.|+.+++++|++.++.++..+.+|++|+.
T Consensus 82 ~g~~~dv~el~aa~~~gid-----~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 82 EGTFMDVIELDAASNRGID-----EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred cCCCCccEEEeCcccCCHH-----HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 4455568899987666653 3344443332222 234579999999999999999999999999999999999998
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP 579 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~ 579 (629)
+..+.++|++||.++.|.+++.+++..+|..++..+++.+++++++.|++.++||+|.+++.|+.+..... +..+.
T Consensus 157 ~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~----~~It~ 232 (472)
T PRK14962 157 LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE----GKITL 232 (472)
T ss_pred hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC----CCCCH
Confidence 88999999999999999999999999999999999999999999999999999999999999998664321 11222
Q ss_pred hhHH--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742 580 LGWE--------EVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628 (629)
Q Consensus 580 ~~~e--------k~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~ 628 (629)
.++. ..+.++.+.+..++. ......+.+++..+.+|..|+.+|..
T Consensus 233 e~V~~~l~~~~~~~i~~li~si~~~d~----~~Al~~l~~ll~~Gedp~~i~r~l~~ 285 (472)
T PRK14962 233 ETVHEALGLIPIEVVRDYINAIFNGDV----KRVFTVLDDVYYSGKDYEVLIQQAIE 285 (472)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3332 333455554444332 23445577888889999999988853
No 18
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=8.5e-30 Score=285.24 Aligned_cols=270 Identities=19% Similarity=0.199 Sum_probs=204.0
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-C---CCCccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-E---KWPTQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~---~~~~~v~~ 419 (629)
.+.|++||||.+|+||+||+.+++.|..++..++.+| +||+||+|||||++|+++|+.++|..... . .|..|..+
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4679999999999999999999999999999999988 68999999999999999999998742211 1 12233333
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.-.....++++++....++ +.++++...+...+ .+..+||||||+|.|+.+++++|++++|+++..+.|||+|+
T Consensus 83 ~~~~~~dlieidaas~~gv-----d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGV-----EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred hcCCCCceEEeecccccCH-----HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 3445567788877444443 33444444433322 34567999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
+...+..+|++||..++|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+..... +...
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~----~~It 233 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG----GELK 233 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999997654321 1222
Q ss_pred chhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++++ .+.++...+..++. ..+. ..+.+++..+.+...++..|.
T Consensus 234 ~~~V~~~l~~~~~~~v~~ll~Al~~~d~-~~~l---~~~~~l~~~~~~~~~~l~~l~ 286 (546)
T PRK14957 234 QAQIKQMLGIIDSEEVYSIINAIIDNDP-KAIL---PAIKNLALTESSADAVLDRIA 286 (546)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHcCCH-HHHH---HHHHHHHHhCCCHHHHHHHHH
Confidence 233333 34555554444332 2222 223445555666666665554
No 19
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=7.5e-30 Score=284.64 Aligned_cols=272 Identities=14% Similarity=0.190 Sum_probs=214.8
Q ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC---CCCCcccccccc
Q 036742 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN---EKWPTQVLVPVA 422 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~---~~~~~~v~~~i~ 422 (629)
+| +||||.+|+||+||+++++.|+.++..+.++|. ||+|||||||||+|+++|+.+.|..... ..|..|..+...
T Consensus 4 l~-~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~ 82 (504)
T PRK14963 4 LY-QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRG 82 (504)
T ss_pred HH-HhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcC
Confidence 44 999999999999999999999999999999987 9999999999999999999997643111 122233344445
Q ss_pred CCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+..++++++....++ +.++++.......+ ....+||||||+|.++..++++|++.++++...+.||++|+.+.
T Consensus 83 ~h~dv~el~~~~~~~v-----d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 83 AHPDVLEIDAASNNSV-----EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred CCCceEEecccccCCH-----HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 6777899998655553 34455444333322 23567999999999999999999999999999999999999999
Q ss_pred cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCC---CCC
Q 036742 502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD---QPI 578 (629)
Q Consensus 502 ~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~---~~~ 578 (629)
.+.++|++||..++|.+++.+++..+|..++.++|+.++++++..|++.++||+|++++.|+.+...+..+... ...
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l 237 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEAL 237 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976542221110 011
Q ss_pred chhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742 579 PLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628 (629)
Q Consensus 579 ~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~ 628 (629)
...+++.+.+++..+..++....+ ..+.+++..+.++..|+..|.+
T Consensus 238 ~~~~~~~if~Li~al~~~d~~~Al----~~l~~Ll~~G~~~~~Il~~L~~ 283 (504)
T PRK14963 238 GLPPQERLRGIAAALAQGDAAEAL----SGAAQLYRDGFAARTLVEGLLE 283 (504)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCHHHHHHHHHH
Confidence 123355577777777666554444 4456788889999998887753
No 20
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=1.2e-29 Score=273.26 Aligned_cols=270 Identities=20% Similarity=0.202 Sum_probs=203.7
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccc--
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVP-- 420 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~-- 420 (629)
.+.|++||||++|+||+||+++++.|+.++..++.+|. ||+||+|+||||+|+++|+.+.|..... ..+..|..|.
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 46799999999999999999999999999999999985 8999999999999999999997653211 1222232222
Q ss_pred -ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 421 -VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 421 -i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
......++++++....+. +.++++...+...+. ...+||||||+|.|+..++++|++.+|+++..+.||++|+
T Consensus 83 ~~~~~~d~~~~~~~~~~~v-----~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKV-----EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred hcCCCCceEEecccccCCH-----HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 223345666766432222 335555554443332 3457999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
+...+.++|++||..++|.+++.+++.++|..++.++++.++++++..|+..++||+|.|++.|+.+...+. +...
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~----~~It 233 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGK----GNIN 233 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998654331 2222
Q ss_pred chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++ +..+.+++..+..++... ....+.+++..+.++..|+..|.
T Consensus 234 ~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~----~~~~~~~l~~~g~~~~~il~~l~ 286 (363)
T PRK14961 234 IKNVTDMLGLLNEKQSFLLTDALLKKDSKK----TMLLLNKISSIGIEWENILIEML 286 (363)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2222 233445555554443322 22334566666777776665543
No 21
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=1e-29 Score=288.27 Aligned_cols=269 Identities=16% Similarity=0.222 Sum_probs=210.7
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLVP 420 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~~ 420 (629)
+-|++||||++|+||+||+++++.|+.++..|.++|. |||||+|+|||++|+++|+.++|..... ..|..|..+.
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 4588999999999999999999999999999999885 8999999999999999999998753211 2233445555
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
...+..++++++....++ +.++++.......+ ...++|+||||+|.|+.+++++|+++||+++..+.|||+|+.
T Consensus 84 ~g~~~d~~eid~~s~~~v-----~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGV-----DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred cCCCCCeeeeeccCccCH-----HHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 556777888887554454 33455554443333 245679999999999999999999999999999999999999
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP 579 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~ 579 (629)
+.+|.++|++||..+.|.+++.+++..+|..++.++|+.++++.+..|++.++||+|.++++|+.+..... +..+.
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g----~~It~ 234 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCG----DAVGD 234 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999987654322 12222
Q ss_pred hhHHHH--------HHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 580 LGWEEV--------LIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 580 ~~~ek~--------l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
.++..+ +.++...+..++... ....+.+++..+.++..++..|.
T Consensus 235 edV~~llG~~~~~~l~~ll~al~~~d~~~----al~~l~~l~~~G~~~~~~l~~Ll 286 (576)
T PRK14965 235 DDVAELLGVVDRRLLLDISAAVFGRDTRA----LLEIVERVDEFGYNMRQFCQELI 286 (576)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCHHHHHHHHH
Confidence 333333 455555555544222 22345566677777776666554
No 22
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=1.9e-29 Score=280.82 Aligned_cols=275 Identities=16% Similarity=0.210 Sum_probs=216.8
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCC--------CCCC
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACW--------NEKW 413 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~--------~~~~ 413 (629)
...++|++||||.+|+|++||+.+++.|+.++..++.+ ++||+||+||||||+|+++|+.++|.... ...|
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 34678999999999999999999999999999998876 68899999999999999999999875311 0122
Q ss_pred CccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcE
Q 036742 414 PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCK 492 (629)
Q Consensus 414 ~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~ 492 (629)
..|..+.-..+..++++++....++ +.+++++......+ ...++||||||+|.|+..++++|++++|+++..+.
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~v-----d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~v 160 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSV-----DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHII 160 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCH-----HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEE
Confidence 3444444455678899988655554 34455554433332 23567999999999999999999999999999999
Q ss_pred EEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742 493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572 (629)
Q Consensus 493 ~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~ 572 (629)
||++|+...++.++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+......
T Consensus 161 fI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~- 239 (507)
T PRK06645 161 FIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAK- 239 (507)
T ss_pred EEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred CCCCCCchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 573 ADDQPIPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 573 ~~~~~~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..+..+..++ +..+.++...++.++... ....+.+++..+.++..|+..|+
T Consensus 240 ~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~----Al~~l~~L~~~g~~~~~~l~~l~ 298 (507)
T PRK06645 240 SDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEK----AINLINKLYGSSVNLEIFIESVS 298 (507)
T ss_pred CCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 0111222222 445566666666655433 34557788888999988877665
No 23
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=2.2e-29 Score=282.57 Aligned_cols=270 Identities=16% Similarity=0.177 Sum_probs=208.6
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~ 419 (629)
.+.|++||||.+|++|+||+.+++.|..++..+..+| +||+||+|+|||++|+++|+.+.|..... ..|..|..+
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3579999999999999999999999999999998886 78999999999999999999998754211 122233333
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
....+..++++++....++ +.++++...+...+. +..+|+||||+|.|+.+++++|++++|+++..+.+|++|+
T Consensus 83 ~~~~h~DiieIdaas~igV-----d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGV-----DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HcCCCCceEEeccccccCH-----HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 4445677888887544443 344555544443322 3467999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
.+..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|+..++||+|.|+++|+.+..... ....
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~----~~It 233 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKN----SEID 233 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcC----CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998665432 1112
Q ss_pred chhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++.+ .+.++...+..++. ...+..+.+++..+..+..++..|.
T Consensus 234 ~e~V~ellg~~~~~~Vf~Ll~AI~~kd~----~~al~~l~~Ll~~ge~~~~il~~L~ 286 (605)
T PRK05896 234 IEDINKTFGLVDNNKKINLIELIQKNDI----EELRNLINELESKGINFEAFCRDLI 286 (605)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHCCCH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222222 23444444433332 2233445677777888877777664
No 24
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=2.5e-29 Score=280.40 Aligned_cols=218 Identities=15% Similarity=0.169 Sum_probs=182.5
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---cccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLVP 420 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~~ 420 (629)
+.|++||||.+|+||+||+.+++.|+.++..|..+|+ |||||+|+|||++|+++|+.+.|..... ..+..| ..+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 5699999999999999999999999999999999986 7999999999999999999997653211 112222 2222
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
-..+..++++++...+++ +.++++.......+ .+..+|+||||+|.|+.+++++|++++|+++..+.|||+|++
T Consensus 82 ~~~h~dv~eldaas~~gI-----d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGI-----DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred hcCCCeEEEeccccccCH-----HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 234455778877655554 44555554433332 245679999999999999999999999999999999999999
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
+..|.++|++||..++|.+++.+++..+|..++.++|+.++++++..|+..++||+|.++++|+.+...
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~ 225 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIY 225 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999876654
No 25
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=4.9e-29 Score=281.68 Aligned_cols=270 Identities=18% Similarity=0.227 Sum_probs=210.5
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~ 419 (629)
.+-|++||||++|+||+||+++++.|++++..+..+| +||+||+|||||++|+++|+.++|..... ..|..|..+
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 3558899999999999999999999999999999888 67899999999999999999998764211 223344555
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
....+..++++++....++ +.++++.......+ ...++|+||||+|.|+.+++++|++++|+++..+.||++|+
T Consensus 83 ~~g~~~dv~eidaas~~~v-----d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGV-----DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred hcCCCCCeEEeeccccCCH-----HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 5556778899988655554 44555555444333 34567999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
.++.+.++|+|||..+.|.+++.+++..+|..++.++|+.++++++..|+..++||+|.|++.|+.+...+ .+..+
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~----~~~It 233 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFG----DGKVT 233 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----cCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998775532 12222
Q ss_pred chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++ ...+.+++..+..++.... ...+.+++..+.++..++..|.
T Consensus 234 ~~~V~~vlg~~~~~~i~~l~~al~~~d~~~a----l~~l~~l~~~g~d~~~~l~~L~ 286 (559)
T PRK05563 234 YEDALEVTGSVSQEALDDLVDAIVEGDVAKA----LKILEELLDEGKDPNRFIEDLI 286 (559)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccCHHHH----HHHHHHHHHcCCCHHHHHHHHH
Confidence 2222 2344555555555443222 2334555666666666665553
No 26
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.97 E-value=6.7e-30 Score=282.18 Aligned_cols=269 Identities=20% Similarity=0.239 Sum_probs=216.6
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCC-CCCCCC---cccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDAC-WNEKWP---TQVLVP 420 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~-~~~~~~---~~v~~~ 420 (629)
+..+.||||++|+|++||+.++..|++.+..++..| .||+||-||||||+||.+|+.|+|... ....|. .|.++.
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 456799999999999999999999999999999876 679999999999999999999998852 112233 333444
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
-.....++|+++....++ +.+|++.+.....+ .+++||+||||+|.|+..++|+|++++|+++.++.|||+|.+
T Consensus 84 ~g~~~DviEiDaASn~gV-----ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 84 EGSLIDVIEIDAASNTGV-----DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred cCCcccchhhhhhhccCh-----HHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 445677889998766675 56777777666554 456789999999999999999999999999999999999999
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP 579 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~ 579 (629)
+.+++.+|+|||+.+.|..++.++|...|..++.++++.++++++..|++.++|.+|.++.+|+.+...+. +....
T Consensus 159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~----~~It~ 234 (515)
T COG2812 159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE----GEITL 234 (515)
T ss_pred cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC----CcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766443 12222
Q ss_pred hhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 580 LGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 580 ~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..+ ...+..+...++.++.. .....+.+++..+..+.-++.+|.
T Consensus 235 ~~v~~~lG~~~~~~~~~~~~~i~~~d~~----~~~~~~~~l~~~G~~~~~~l~dl~ 286 (515)
T COG2812 235 ESVRDMLGLTDIEKLLSLLEAILKGDAK----EALRLINELIEEGKDPEAFLEDLL 286 (515)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHccCHH----HHHHHHHHHHHhCcCHHHHHHHHH
Confidence 221 22333444444444332 233456677778888887777765
No 27
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=4.7e-29 Score=280.07 Aligned_cols=270 Identities=17% Similarity=0.182 Sum_probs=206.4
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---ccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~ 419 (629)
.+.|++||||.+|+||+||+++++.|..++..++.+|. ||+||+|||||++|+++|+.++|..... ..|..| ..+
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 45689999999999999999999999999999999985 8999999999999999999998753211 122233 332
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.......++++++....++ +.++++.......+ .+..+|+||||+|.|+.+++++|++++|+++..+.|||+|+
T Consensus 83 ~~~~~~d~~ei~~~~~~~v-----d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQV-----DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred hcCCCCceeEeeccccCCH-----HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 3333456778877544443 44555555444333 34567999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
++..+..+|+|||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+.+...+. +...
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~----~~I~ 233 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGG----GTVN 233 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999987655432 2222
Q ss_pred chhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++.+ .+.++...+..++ .. .+...+.+++..+.+...++..|.
T Consensus 234 ~~~v~~~~~~~~~~~i~~ll~al~~~~-~~---~~l~~~~~l~~~~~~~~~~l~~l~ 286 (527)
T PRK14969 234 ESEVRAMLGAIDQDYLFALLEALLAQD-GA---ALLAIADAMEERSLSFDAALQDLA 286 (527)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCC-HH---HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 223322 3445555444433 22 233334566666777777776654
No 28
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=8.9e-29 Score=280.40 Aligned_cols=271 Identities=14% Similarity=0.169 Sum_probs=210.8
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC------CCCCcc
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN------EKWPTQ 416 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~------~~~~~~ 416 (629)
..+.|++||||.+|+||+||+.+++.|..++..|+.+| +||+||+|+|||++|+++|+.++|..... +.|..|
T Consensus 10 ~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 10 PYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred cchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 35779999999999999999999999999999999886 89999999999999999999998753211 123333
Q ss_pred ccc---cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcE
Q 036742 417 VLV---PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCK 492 (629)
Q Consensus 417 v~~---~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~ 492 (629)
..| .-..+..++++++....++ +.++++.......+ ....+||||||+|.|+..++++|+++||+++..+.
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gv-----d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~ 164 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGV-----DDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVK 164 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCH-----HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeE
Confidence 333 3334566888887655554 44556555443333 23567999999999999999999999999999999
Q ss_pred EEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742 493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572 (629)
Q Consensus 493 ~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~ 572 (629)
|||+|+...++..+|++||+.+.|.+++.+++..+|.+++.++++.++++++..|++.++||+|.+++.|+.+...+.
T Consensus 165 fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~-- 242 (598)
T PRK09111 165 FIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGA-- 242 (598)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654431
Q ss_pred CCCCCCchhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 573 ADDQPIPLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 573 ~~~~~~~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
+..+..++.. .+.++...++.++.. .....+..++..+.++..|+..|+
T Consensus 243 --g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~----~Al~~l~~l~~~G~~p~~il~~L~ 299 (598)
T PRK09111 243 --GEVTAEAVRDMLGLADRARVIDLFEALMRGDVA----AALAEFRAQYDAGADPVVVLTDLA 299 (598)
T ss_pred --CCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2333333332 334455544444322 223345566777778877776665
No 29
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.97 E-value=1.7e-28 Score=257.07 Aligned_cols=257 Identities=24% Similarity=0.393 Sum_probs=201.6
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
..+|++||||.+|+|++|++++++.|+.++..+..+++||+||||||||++|+++++++.+... .
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~---------------~ 68 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW---------------R 68 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc---------------c
Confidence 4679999999999999999999999999999998899999999999999999999999866532 1
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~ 504 (629)
..++++++++..+.. .+.+.+.+....... .....+||||||+|.+....++.|+++++.+...+.+|++||....+.
T Consensus 69 ~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~ 146 (319)
T PRK00440 69 ENFLELNASDERGID-VIRNKIKEFARTAPV-GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKII 146 (319)
T ss_pred cceEEeccccccchH-HHHHHHHHHHhcCCC-CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccc
Confidence 135677665444322 222333333322211 112357999999999999999999999999889999999999999999
Q ss_pred HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH--
Q 036742 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW-- 582 (629)
Q Consensus 505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~-- 582 (629)
+++++||.++.|.+++.+++..+|..++.++++.++++++..|++.++||+|.+++.|+.+...+.. .+..++
T Consensus 147 ~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~-----it~~~v~~ 221 (319)
T PRK00440 147 DPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE-----VTEEAVYK 221 (319)
T ss_pred hhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-----CCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987764321 122222
Q ss_pred ------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Q 036742 583 ------EEVLIELAAEILADPSPKRLVMVRGKIQKLLA-EFVHPKLILLVMH 627 (629)
Q Consensus 583 ------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~-~~i~~~~i~~~La 627 (629)
+..+.++...+..+. ....+..+++++. .+.++..|++.|.
T Consensus 222 ~~~~~~~~~i~~l~~~~~~~~----~~~a~~~l~~ll~~~g~~~~~i~~~l~ 269 (319)
T PRK00440 222 ITGTARPEEIREMIELALNGD----FTEAREKLRDLMIDYGLSGEDIIKQIH 269 (319)
T ss_pred HhCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 233455555554432 4445666777774 6788888887764
No 30
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=1.6e-28 Score=280.25 Aligned_cols=268 Identities=18% Similarity=0.220 Sum_probs=202.3
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC--CCCCccccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN--EKWPTQVLVPV 421 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~--~~~~~~v~~~i 421 (629)
...|++||||.+|+||+||+.+++.|+.++..++++|. ||+||+|||||++|+++|+.+.|..... ..|..|..| .
T Consensus 5 y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~-~ 83 (725)
T PRK07133 5 YKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN-V 83 (725)
T ss_pred hhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh-h
Confidence 46799999999999999999999999999999998875 7999999999999999999998753210 112233322 2
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
..+..++++++....++ +.++++.......+ .+..+|+||||+|.|+.+++++|+++||+++..+.|||+|+.+
T Consensus 84 ~~~~Dvieidaasn~~v-----d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 84 NNSLDIIEMDAASNNGV-----DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred cCCCcEEEEeccccCCH-----HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 23445677766433333 34555555444433 3456799999999999999999999999999999999999999
Q ss_pred ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCch
Q 036742 501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580 (629)
Q Consensus 501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~ 580 (629)
..|.++|++||+.+.|.+++.+++..+|..++.++|+.++++++..|+..++|++|.|+++|+.+...+ .+..+..
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~----~~~It~e 234 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFG----NNKITLK 234 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----cCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999866432 1222222
Q ss_pred hHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742 581 GWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626 (629)
Q Consensus 581 ~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L 626 (629)
++.+ .+.++...+..++. ..++..+.+++..+..+..++..|
T Consensus 235 ~V~ellg~~~~e~If~Ll~aI~~kd~----~~aL~~l~~L~~~ged~~~iL~~L 284 (725)
T PRK07133 235 NVEELFGLVSNENLINLLNLLYSKDI----KEVLNILNQIKEQGIDPELLLISL 284 (725)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 23344444433332 222233455566666666665544
No 31
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=2.8e-29 Score=282.88 Aligned_cols=217 Identities=12% Similarity=0.168 Sum_probs=179.8
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCC-CCCCC---ccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACW-NEKWP---TQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~-~~~~~---~~v~~ 419 (629)
.+.|++||||++|+||+||+.+++.|+.++..++++ ++||+||+|||||++|++||+.++|.... ...|. .|..+
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 467999999999999999999999999999998864 67799999999999999999999875311 11222 33333
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
....+..++++++....++ +.++.+...+.... ....+||||||+|.|+..++++|++++|++...+.||++|+
T Consensus 83 ~~g~hpDv~eId~a~~~~I-----d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGI-----DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred hcCCCCceEEEecccccCH-----HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 3345566888887544444 23344333333222 23457999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
.+..+..+|++||.+|.|.+++.+++..+|..++.++++.++++++..|++.++||+|+++++|+.+.
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998654
No 32
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=3.9e-28 Score=269.93 Aligned_cols=270 Identities=16% Similarity=0.180 Sum_probs=208.3
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCC---Cccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWN-EKW---PTQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~---~~~v~~ 419 (629)
.++|+++|||.+|++++||+.+++.|++++..+..+|. |||||+|+|||++|+++|+.++|..... ..| .+|..+
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 46899999999999999999999999999999999885 6899999999999999999997642111 112 233444
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.......++++++....++ +.++.+.......+ .+..+|+||||+|.|+.+++++|++++++++..+.||++|+
T Consensus 83 ~~g~~~d~~eidaas~~gv-----d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGI-----DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred hcCCCCcEEEEeCccCCCH-----HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 4445567888887555554 23344444333332 24567999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
....+.++|++||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++++|+.+...+ .+..+
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~----~~~It 233 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG----EGKVT 233 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CCCcC
Confidence 98899999999999999999999999999999999999999999999999999999999999999876532 22233
Q ss_pred chhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++++ .+.++...+..++... ....+.+++..+.++..++..|.
T Consensus 234 ~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~----al~~l~~L~~~g~~~~~iL~~L~ 286 (486)
T PRK14953 234 IKVVEEFLGIVSQESVRKFLNLLLESDVDE----AIKFLRTLEEKGYNLNKFWKQLE 286 (486)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHCCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 334433 3455555555544322 22334556677777777766554
No 33
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=3.9e-28 Score=276.54 Aligned_cols=273 Identities=16% Similarity=0.181 Sum_probs=212.0
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-----CCCCccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-----EKWPTQVLV 419 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-----~~~~~~v~~ 419 (629)
..|++||||.+|+||+||+++++.|..++..|..+| +|||||+|+|||++|+++|+.+.|..... ..|..|..+
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 469999999999999999999999999999999998 78999999999999999999998653211 122334444
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
....+..+.++++....+. +.++++...+...+ .+..+|+||||+|.|+..++++|+++||+++..+.|||+|+
T Consensus 85 ~~~~~~n~~~ld~~~~~~v-----d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 85 NEQRSYNIHELDAASNNSV-----DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred hcCCCCceEEecccccCCH-----HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 4445667788877544433 34455554443333 23567999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCCC--
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNY-PFADD-- 575 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~-~~~~~-- 575 (629)
....|.++|++||.+++|.+++.+++..+|..++.++|+.++++++..|+..++||+|.+++.|+.+..... .+...
T Consensus 160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V 239 (614)
T PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSV 239 (614)
T ss_pred CchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987654321 11100
Q ss_pred -CCCchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 576 -QPIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 576 -~~~~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..........+.+++..+..+.....+ ..+++++..+.++..|+.-|+
T Consensus 240 ~~~l~~~~~~~iF~L~dai~~~~~~~al----~ll~~Ll~~g~~~~~iL~~L~ 288 (614)
T PRK14971 240 IENLNILDYDYYFRLTDALLAGKVSDSL----LLFDEILNKGFDGSHFITGLA 288 (614)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCHHHHHHHHH
Confidence 000001123346677767666544443 356788888888888877665
No 34
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.96 E-value=4.7e-28 Score=255.91 Aligned_cols=263 Identities=25% Similarity=0.371 Sum_probs=200.0
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
.+|++||+|.+|++|+|++.+++.|..++..+..||+||+||||||||++|+++++++.+... . .
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~--------------~ 67 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-E--------------N 67 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-c--------------c
Confidence 489999999999999999999999999999998899999999999999999999999865431 0 1
Q ss_pred ceEEEecccch--hh-------------------HHHHHHHHHHHHHHhccCcC--CCCeEEEEEccchhhHHHHHHHHH
Q 036742 426 HHVELNVNLQA--NA-------------------KYALMGLVKEIRDNLAITPE--VSNAMIVIYEVDKAAEHIQYLIKW 482 (629)
Q Consensus 426 ~vleInas~~~--~~-------------------k~~l~~~lrei~~~~~~~~~--~~~kVIIIDEID~Ls~~~q~aLlr 482 (629)
.++++++.+.. .. .....+.++++.+.+..... ...+||||||+|.+....++.|++
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~ 147 (337)
T PRK12402 68 NFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRR 147 (337)
T ss_pred ceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHH
Confidence 13444443210 00 00012344444433332221 235699999999999999999999
Q ss_pred HHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 483 IMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 483 ilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
+++.+...+.||++|+.+..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|+..++||+|.+++.|
T Consensus 148 ~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 148 IMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred HHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99988888999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCC---CCch-hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HcCCCHHHHHHHHh
Q 036742 563 EACKALNYPFADDQ---PIPL-GWEEVLIELAAEILADPSPKRLVMVRGKIQKLL-AEFVHPKLILLVMH 627 (629)
Q Consensus 563 q~~~~~~~~~~~~~---~~~~-~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL-~~~i~~~~i~~~La 627 (629)
+.+...+..+.... .... .++..+.++...+..++ ...++..+++++ ..+.++..|++.|.
T Consensus 228 ~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~----~~~a~~~l~~l~~~~g~~~~~i~~~l~ 293 (337)
T PRK12402 228 QTAALAAGEITMEAAYEALGDVGTDEVIESLLDAAEAGD----FTDARKTLDDLLIDEGLSGGEVLEELL 293 (337)
T ss_pred HHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 98664332221100 0011 22445566666555543 345556677776 68889999988874
No 35
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=6.4e-28 Score=273.90 Aligned_cols=273 Identities=15% Similarity=0.167 Sum_probs=202.6
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC---------CCCCc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN---------EKWPT 415 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~---------~~~~~ 415 (629)
+..++||||.+|++|+||+.+++.|+.++..|+++| +||+||+||||||+|+++|+.++|..... ..|..
T Consensus 4 ~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 4 QVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 346799999999999999999999999999999988 88999999999999999999998853111 12223
Q ss_pred c---ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742 416 Q---VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC 491 (629)
Q Consensus 416 ~---v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~ 491 (629)
| ..+....+..+.++++....++ +.++++...+...+ .+..+||||||+|.|+..++++|++++|+++..+
T Consensus 84 C~sC~~~~~g~~~n~~~~d~~s~~~v-----d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t 158 (620)
T PRK14954 84 CESCRDFDAGTSLNISEFDAASNNSV-----DDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA 158 (620)
T ss_pred CHHHHHHhccCCCCeEEecccccCCH-----HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence 3 3333334555666765433333 44555555544333 2346799999999999999999999999999999
Q ss_pred EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 036742 492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571 (629)
Q Consensus 492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~ 571 (629)
.|||+|+....|.++|++||.+++|.+++.+++..+|..++.++|+.+++++++.|++.++||+|.+++.|+.+......
T Consensus 159 v~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~ 238 (620)
T PRK14954 159 IFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVG 238 (620)
T ss_pred EEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccc
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999976654210
Q ss_pred CC-CCCCCchhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 572 FA-DDQPIPLGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 572 ~~-~~~~~~~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
-. .+..+..++.+ .+.++...+..++... ....+.+++..+..+..|+..|+
T Consensus 239 ~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~----al~~l~~Ll~~ge~p~~iL~lL~ 299 (620)
T PRK14954 239 SEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVK----MLEVARFVIDNGYDEQDFLEKLI 299 (620)
T ss_pred cccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCHHHHHHHHH
Confidence 01 11112223333 2344444444443222 22334556666666666655543
No 36
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=7.8e-28 Score=262.09 Aligned_cols=218 Identities=16% Similarity=0.196 Sum_probs=180.7
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC---------CCCC-
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN---------EKWP- 414 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~---------~~~~- 414 (629)
...++||||.+|++|+||+.+++.|+.++..|+.+| +||+||||||||++|+++|+.+.|..... ..|.
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 346799999999999999999999999999999998 88999999999999999999998853110 1122
Q ss_pred --ccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742 415 --TQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC 491 (629)
Q Consensus 415 --~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~ 491 (629)
.|..+....+..+++++.....++ +.++++...+...+. ...+||||||+|.|+...++.|++.+|+++..+
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~~~i-----d~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t 158 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSV-----DDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHA 158 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccccCCH-----HHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCe
Confidence 223333334556677766444433 445555555543332 345799999999999999999999999999999
Q ss_pred EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
.||++|+....+.++|++||.+++|.+++.+++..+|..++.++++.+++++++.|+..++||+|.+++.|+.+...
T Consensus 159 ~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 159 IFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAF 235 (397)
T ss_pred EEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999986654
No 37
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=6.8e-28 Score=266.20 Aligned_cols=270 Identities=17% Similarity=0.187 Sum_probs=201.5
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC--CCCC---cccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN--EKWP---TQVL 418 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~--~~~~---~~v~ 418 (629)
.+.|++||||.+|+||+||+.+++.|+.++..|..+| +|||||+|+|||++|+++|+.+.|..... ..|. .|..
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 5679999999999999999999999999999999887 78999999999999999999998753211 1122 2233
Q ss_pred ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742 419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC 497 (629)
Q Consensus 419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit 497 (629)
+....+..+++++.....++ +.++++........ ....+||||||+|.|+.+++++|++++|+++..+.||++|
T Consensus 84 i~~~~~~d~~~i~g~~~~gi-----d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGI-----EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred HhcCCCCceEEeeccccCCH-----HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEe
Confidence 33334556777776444443 23344433333221 2456799999999999999999999999999999999999
Q ss_pred cCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCC
Q 036742 498 EDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577 (629)
Q Consensus 498 N~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~ 577 (629)
+....|.++|++||.++.|.+++.+++..+|..++.++|+.++++++..|+..++||+|.+++.|+.+..... +..
T Consensus 159 ~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~----~~I 234 (451)
T PRK06305 159 TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFP----KSL 234 (451)
T ss_pred CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998654311 112
Q ss_pred CchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 578 IPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 578 ~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
...++ +..+.++...+..++ ... ....+.+++..+..+..|+..|.
T Consensus 235 t~~~V~~l~~~~~~~~vf~L~~ai~~~d-~~~---al~~l~~L~~~g~~~~~iL~~L~ 288 (451)
T PRK06305 235 DPDSVAKALGLLSQDSLYTLDEAITTQN-YAQ---ALEPVTDAMNSGVAPAHFLHDLT 288 (451)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCC-HHH---HHHHHHHHHHcCcCHHHHHHHHH
Confidence 22222 233344444333322 222 22334555666666666655443
No 38
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=1.1e-27 Score=272.88 Aligned_cols=269 Identities=17% Similarity=0.234 Sum_probs=203.6
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC---CCCCcc---c
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEIYGDACWN---EKWPTQ---V 417 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~---~~~~~~---v 417 (629)
..+|.+||||.+|++++|++++++.|+.++..++. +++||+||+|+|||++|+++|+.++|..... ..|..| .
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 46799999999999999999999999999998876 5789999999999999999999998753211 122223 3
Q ss_pred cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEE
Q 036742 418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILC 496 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILi 496 (629)
.+....+..++++++....++ +.++++........ .+..+||||||+|.|+.+++++|++++|++...+.|||+
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~v-----d~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGV-----DNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred HHhcCCCccEEEEeccccCCH-----HHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEE
Confidence 333334556778877543343 45566655443332 245679999999999999999999999999999999999
Q ss_pred ecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCC
Q 036742 497 CEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576 (629)
Q Consensus 497 tN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~ 576 (629)
|+++..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|+|+++|+.+.+....
T Consensus 158 t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~----- 232 (620)
T PRK14948 158 TTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGP----- 232 (620)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654211
Q ss_pred CCchhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 577 PIPLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 577 ~~~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
.+..++ +..+.++...+..+ +...+.. .+.+++..+..+..|+..|+
T Consensus 233 It~e~V~~lvg~~~e~~i~~Ll~ai~~~-d~~~al~---~~~~Ll~~g~~p~~iL~~L~ 287 (620)
T PRK14948 233 ITPEAVWDLLGAVPEQDLLNLLKALASN-DPESLLD---SCRQLLDRGREPLAILQGLA 287 (620)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHCC-CHHHHHH---HHHHHHHcCCCHHHHHHHHH
Confidence 111111 22234455544433 3333322 23445556666666665554
No 39
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.96 E-value=4.3e-27 Score=250.79 Aligned_cols=269 Identities=21% Similarity=0.251 Sum_probs=203.2
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcc---cccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQ---VLVP 420 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~---v~~~ 420 (629)
++|++||||.+|++++|++.+++.|++++..|..+| +||+||||+|||++|+++|+.+.|..... ..+..| ..+.
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 689999999999999999999999999999999886 68999999999999999999987653210 112222 2223
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
......++++++....+. +.++++.......+ ...++||||||+|.++..+++.|++.+++++..+.||++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGV-----DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTE 156 (355)
T ss_pred cCCCCCEEEeeccccCCH-----HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCC
Confidence 334455777777533332 23344444333332 234569999999999999999999999999899999999999
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP 579 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~ 579 (629)
+..+.++|++||..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.+++.|+.+..... +..+.
T Consensus 157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~----~~it~ 232 (355)
T TIGR02397 157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN----GNITY 232 (355)
T ss_pred HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC----CCCCH
Confidence 98899999999999999999999999999999999999999999999999999999999999998765432 22232
Q ss_pred hhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 580 LGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 580 ~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
.++++ .+.++...+..++. ......+.+++..+.++..|+..|.
T Consensus 233 ~~v~~~~~~~~~~~i~~l~~ai~~~~~----~~a~~~~~~l~~~~~~~~~il~~l~ 284 (355)
T TIGR02397 233 EDVNELLGLVDDEKLIELLEAILNKDT----AEALKILDEILESGVDPEKFLEDLI 284 (355)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33332 34555555554432 2233445566666777766665543
No 40
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=2.4e-27 Score=267.49 Aligned_cols=269 Identities=14% Similarity=0.146 Sum_probs=204.1
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC----CCCCcccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN----EKWPTQVLVP 420 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~----~~~~~~v~~~ 420 (629)
+-|+.||||.+|+||+||+.+++.|+.++..+..+| +|||||+|+|||++|+++|+.+.|..... ..|..|..+.
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 457899999999999999999999999999999987 78999999999999999999998752111 1122333333
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
...+..++++++....+. +.++++.......+ ...++|+||||+|.|+..++++|++++|+++..+.||++|+.
T Consensus 84 ~~~~~dv~~idgas~~~v-----ddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSV-----QDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred cCCCCCeEEecCcccCCH-----HHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 334456677765432332 33444443333222 345679999999999999999999999999999999999999
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCc
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIP 579 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~ 579 (629)
+..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+..... +..+.
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~----~~It~ 234 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD----SDITL 234 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC----CCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999987654321 22222
Q ss_pred hhHHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 580 LGWEE--------VLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 580 ~~~ek--------~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
.++.+ .+.++...+..++.. .....+.+++..+.++..++..|+
T Consensus 235 e~V~~llg~~~~~~if~LidaI~~~D~~----~al~~l~~Ll~~G~d~~~iL~~Ll 286 (563)
T PRK06647 235 EQIRSKMGLTGDEFLEKLASSILNEDAK----ELLCVLDSVFLSGVSVEQFLLDCI 286 (563)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23322 344555555444322 223345666677777777776664
No 41
>PRK04195 replication factor C large subunit; Provisional
Probab=99.96 E-value=6.3e-28 Score=268.92 Aligned_cols=251 Identities=21% Similarity=0.256 Sum_probs=187.9
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHc---CC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD---GN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~---g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
.+|++||+|.+|+||+|++++++.|+.|+.. |. .+++||+||||||||++|+++|+++ +..
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~~~-------------- 66 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-GWE-------------- 66 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-CCC--------------
Confidence 5899999999999999999999999999973 33 5689999999999999999999996 332
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH----HHHHHHHHHHhccCCCcEEEEEe
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE----HIQYLIKWIMDGYTDSCKLILCC 497 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~----~~q~aLlrilEe~~~~~~~ILit 497 (629)
++++|+++.+... .+...+........... ...+||||||+|.|.. +..++|+++++. ..++|||+|
T Consensus 67 -----~ielnasd~r~~~-~i~~~i~~~~~~~sl~~-~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~ 137 (482)
T PRK04195 67 -----VIELNASDQRTAD-VIERVAGEAATSGSLFG-ARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTA 137 (482)
T ss_pred -----EEEEcccccccHH-HHHHHHHHhhccCcccC-CCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEec
Confidence 6889997765432 23333333222111111 2457999999999976 567888898883 567899999
Q ss_pred cCCccchH-HHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCC
Q 036742 498 EDDVDIIE-SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQ 576 (629)
Q Consensus 498 N~~~~I~~-aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~ 576 (629)
|++..+.. +|++||..+.|.+|+..++..+|..+|.++++.++++++..|++.++||+|.|++.|+.++.....+....
T Consensus 138 n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~ 217 (482)
T PRK04195 138 NDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLED 217 (482)
T ss_pred cCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHH
Confidence 99988876 89999999999999999999999999999999999999999999999999999999998553222111100
Q ss_pred ---CCchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742 577 ---PIPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626 (629)
Q Consensus 577 ---~~~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L 626 (629)
....+++..+.+++..++........... + ...++++++|+..|
T Consensus 218 v~~~~~~d~~~~if~~l~~i~~~k~~~~a~~~---~---~~~~~~~~~i~~~l 264 (482)
T PRK04195 218 VKTLGRRDREESIFDALDAVFKARNADQALEA---S---YDVDEDPDDLIEWI 264 (482)
T ss_pred HHHhhcCCCCCCHHHHHHHHHCCCCHHHHHHH---H---HcccCCHHHHHHHH
Confidence 01133344557777777776555544331 2 22456666666544
No 42
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.96 E-value=1.1e-28 Score=253.97 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=184.5
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
...++|+++|+|..++|++++++++..+.++...+..||+|||||||+|||+...+.|+.+++...
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~-------------- 91 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHP-------------- 91 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCC--------------
Confidence 346789999999999999999999999999999999999999999999999999999999988422
Q ss_pred CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-------CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEE
Q 036742 423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE-------VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLIL 495 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~-------~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~IL 495 (629)
.+..++++|+++.+++ +.+++....|+.... ...++||+||+|.|+.++|++|++.+|.+..+++|++
T Consensus 92 ~~~m~lelnaSd~rgi-----d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~i 166 (360)
T KOG0990|consen 92 TTSMLLELNASDDRGI-----DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFAT 166 (360)
T ss_pred chhHHHHhhccCccCC-----cchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEE
Confidence 1234789999999887 344554444444432 2567999999999999999999999999999999999
Q ss_pred EecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 496 CCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 496 itN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
+||.+..+.+++++||..++|.+++..++..++..+|+.+.+.++++....++..+.||+|.|+|.||.++..
T Consensus 167 i~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 167 ISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKK 239 (360)
T ss_pred eccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
No 43
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.96 E-value=5.8e-27 Score=266.64 Aligned_cols=269 Identities=15% Similarity=0.166 Sum_probs=206.0
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC--CCCC---ccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN--EKWP---TQVLV 419 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~--~~~~---~~v~~ 419 (629)
+-|++||||++|+||+||+++++.|+.++..+..+| +||+||+|+|||++|+++|+.+.|..... ..|. .|..+
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 457799999999999999999999999999998887 58999999999999999999997654211 1222 22333
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
....+..++++++....+. +.++++........ ....+||||||+|.|+.+.++.|++++|++...+.||++|+
T Consensus 84 ~~~~~~d~~~i~~~~~~~v-----d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSV-----DDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred hcCCCCeEEEEeccccCCH-----HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 3334556778877544443 33455544433332 23567999999999999999999999999999999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
....+.++|++||..+.|.+++..++..+|..++.++|+.++++++..|+..++||+|.+++.|+.+.... .+...
T Consensus 159 ~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~----~~~It 234 (585)
T PRK14950 159 EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTY----GGEIS 234 (585)
T ss_pred ChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999876532 12222
Q ss_pred chhH--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGW--------EEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~--------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++ +..+.+++..+..++... ....+..++..+..+..|+..|.
T Consensus 235 ~e~V~~ll~~s~~~~vf~Lidal~~~d~~~----al~~l~~L~~~g~~~~~il~~L~ 287 (585)
T PRK14950 235 LSQVQSLLGISGDEEVKALAEALLAKDLKA----ALRTLNAVAADGADLRQFTRDLV 287 (585)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2232 233456666555544322 23445666777777777766554
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.95 E-value=4.5e-27 Score=248.58 Aligned_cols=255 Identities=18% Similarity=0.213 Sum_probs=182.0
Q ss_pred chhhhccCCCCCCcccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEA---QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~---~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.+++++.||++|+|++||++++ ..|..+|+.|.++++||||||||||||+|++||+.....
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~---------------- 75 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA---------------- 75 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc----------------
Confidence 4788999999999999999988 578999999999999999999999999999999986333
Q ss_pred CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--C
Q 036742 423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED--D 500 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~--~ 500 (629)
+..+++... +.+ .+.+++.+..+. ...++..|||||||++++...|.+|+..+|. ..+.+|.+|+. .
T Consensus 76 ----f~~~sAv~~-gvk-dlr~i~e~a~~~---~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPs 144 (436)
T COG2256 76 ----FEALSAVTS-GVK-DLREIIEEARKN---RLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPS 144 (436)
T ss_pred ----eEEeccccc-cHH-HHHHHHHHHHHH---HhcCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCC
Confidence 577777322 211 222333332222 1224456999999999999999999999983 33444544432 3
Q ss_pred ccchHHHhhcceEeeccCCCHHHHHHHHHHHH--HhcCCC-----CCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 036742 501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA--RKEDFD-----LSMTFAAKIATKAKQNLRKAIMALEACKALNYPFA 573 (629)
Q Consensus 501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~--~kegl~-----is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~ 573 (629)
..+.++|+|||+++.|.+++.+++.++|.+.+ ...++. +++++++.|+..++||.|.++|.|+.+......-.
T Consensus 145 F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~ 224 (436)
T COG2256 145 FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDE 224 (436)
T ss_pred eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCc
Confidence 35899999999999999999999999999944 344554 78999999999999999999999998776543221
Q ss_pred CCCCCchhHHHHHHHHHHHHhcC-CCh-----HHHHHHHH--------HHHHHHHcCCCHHHHHHHHhcC
Q 036742 574 DDQPIPLGWEEVLIELAAEILAD-PSP-----KRLVMVRG--------KIQKLLAEFVHPKLILLVMHYI 629 (629)
Q Consensus 574 ~~~~~~~~~ek~l~ei~~~il~~-~s~-----~~L~~ir~--------kly~lL~~~i~~~~i~~~La~~ 629 (629)
..+...+++.+++-.....++ +.- ...+++|+ .+..+|..+.+|..|..+|..|
T Consensus 225 --~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~ 292 (436)
T COG2256 225 --VLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRI 292 (436)
T ss_pred --ccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 111233344443322211111 111 11122222 3556888999999998888643
No 45
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=3.3e-26 Score=246.43 Aligned_cols=261 Identities=18% Similarity=0.207 Sum_probs=194.4
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
...|++||||.+|+||+||+.+++.|.++++.|..+ ++|||||||+|||++|+++|+.+.+....... ..-
T Consensus 4 ~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~--------~~~ 75 (367)
T PRK14970 4 FVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPN--------EDF 75 (367)
T ss_pred hHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCC
Confidence 357999999999999999999999999999998877 68899999999999999999998764320000 000
Q ss_pred CcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742 424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD 502 (629)
Q Consensus 424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~ 502 (629)
...++++++....+. +.++++.......+ ....+||||||+|.++..+++.|++.+++++..+.||++|+....
T Consensus 76 ~~~~~~l~~~~~~~~-----~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 76 SFNIFELDAASNNSV-----DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred CcceEEeccccCCCH-----HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 122455554332222 23333333322222 234579999999999999999999999998888999999999999
Q ss_pred chHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH
Q 036742 503 IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW 582 (629)
Q Consensus 503 I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ 582 (629)
+.+++++||..++|.+++.+++..+|..++.++|+.+++++++.|+..++||+|.+++.|+.+...... ..+..++
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~----~it~~~v 226 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGK----NITRQAV 226 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC----CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987654221 1111222
Q ss_pred H--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742 583 E--------EVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626 (629)
Q Consensus 583 e--------k~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L 626 (629)
+ ..+.+++..+..++....+ ..+..++..+.+|-.|+.-|
T Consensus 227 ~~~~~~~~~~~if~l~~ai~~~~~~~a~----~~~~~l~~~~~~~~~il~~l 274 (367)
T PRK14970 227 TENLNILDYDTYINVTDLILENKIPELL----LAFNEILRKGFDGHHFIAGL 274 (367)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCHHHHHHHH
Confidence 2 2345566655555443333 23455566677776665544
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.95 E-value=6.6e-26 Score=238.56 Aligned_cols=200 Identities=23% Similarity=0.411 Sum_probs=164.2
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEE-EcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILI-KGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL-~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.+.+|++||||++|+|++|++++++.|+.++..|..++++| +||||+|||++|+++++++ +..
T Consensus 7 ~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~-~~~--------------- 70 (316)
T PHA02544 7 NEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-GAE--------------- 70 (316)
T ss_pred CCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-Ccc---------------
Confidence 46789999999999999999999999999999999888776 8999999999999999986 332
Q ss_pred CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-hHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-AEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-s~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
++++++.... . ..+.+.+.+....... ....+||||||+|.+ ..++++.|+.+++.+..++.||++||...
T Consensus 71 ----~~~i~~~~~~-~-~~i~~~l~~~~~~~~~--~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 71 ----VLFVNGSDCR-I-DFVRNRLTRFASTVSL--TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred ----ceEeccCccc-H-HHHHHHHHHHHHhhcc--cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 5677776522 2 1222323333322221 134579999999999 77788999999999999999999999999
Q ss_pred cchHHHhhcceEeeccCCCHHHHHHH-------HHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742 502 DIIESVKTHCKVIKVDPPVTHEIMEV-------LIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567 (629)
Q Consensus 502 ~I~~aLrSR~~~I~F~ppt~eei~~i-------L~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~ 567 (629)
.++++|++||..+.|..|+.+++..+ +..++.++++.++++++..+++.+.||+|++++.|+.+..
T Consensus 143 ~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~ 215 (316)
T PHA02544 143 GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS 215 (316)
T ss_pred hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc
Confidence 99999999999999999998887644 3445667899999999999999999999999999997653
No 47
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.93 E-value=1.6e-24 Score=237.26 Aligned_cols=246 Identities=17% Similarity=0.216 Sum_probs=177.9
Q ss_pred hhhhccCCCCCCcccccHHHHHH---HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 347 FWADKHQPSSLNGFICHRHEAQL---LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~---Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
+|+++|||.+|+|++|++++++. |..++..+..+++||+||||||||++|+++|+.+. ..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~-~~---------------- 63 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD-AP---------------- 63 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC-CC----------------
Confidence 69999999999999999999776 99999999989999999999999999999999863 22
Q ss_pred CcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--Cc
Q 036742 424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED--DV 501 (629)
Q Consensus 424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~--~~ 501 (629)
++++++... +.. .+.+.+....... ..+...||||||||.++...+++|+..++. ..+.+|.+++. ..
T Consensus 64 ---~~~l~a~~~-~~~-~ir~ii~~~~~~~---~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~ 133 (413)
T PRK13342 64 ---FEALSAVTS-GVK-DLREVIEEARQRR---SAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSF 133 (413)
T ss_pred ---EEEEecccc-cHH-HHHHHHHHHHHhh---hcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhh
Confidence 466666432 111 1222232222211 123457999999999999999999999985 33444544432 34
Q ss_pred cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 502 DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKE--DF-DLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 502 ~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~ke--gl-~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
.+.++|++||.++.|.+++.+++..+|.+++... ++ .++++++..|++.++||+|.++++|+.+...+ ....
T Consensus 134 ~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~-----~~It 208 (413)
T PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGV-----DSIT 208 (413)
T ss_pred hccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----CCCC
Confidence 6899999999999999999999999999987652 44 88999999999999999999999999876531 1112
Q ss_pred chhHHHHHHHHH--------------HHHh---cCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 579 PLGWEEVLIELA--------------AEIL---ADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 579 ~~~~ek~l~ei~--------------~~il---~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..++..++.... ..+. .+.++ ......+..+|..+.+|..|+.+|-
T Consensus 209 ~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~---~aal~~l~~~l~~G~d~~~i~rrl~ 271 (413)
T PRK13342 209 LELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDP---DAALYYLARMLEAGEDPLFIARRLV 271 (413)
T ss_pred HHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223333332211 1111 11111 1233456778888999999998874
No 48
>PRK04132 replication factor C small subunit; Provisional
Probab=99.92 E-value=3.3e-24 Score=249.13 Aligned_cols=222 Identities=23% Similarity=0.359 Sum_probs=175.3
Q ss_pred EEEEc--CCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-
Q 036742 382 ILIKG--QSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE- 458 (629)
Q Consensus 382 ILL~G--PPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~- 458 (629)
-++.| |.++||||+|+++|++++|... ...++++||++.+++. .++++++.+.....
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~---------------~~~~lElNASd~rgid-----~IR~iIk~~a~~~~~ 626 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENW---------------RHNFLELNASDERGIN-----VIREKVKEFARTKPI 626 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccc---------------cCeEEEEeCCCcccHH-----HHHHHHHHHHhcCCc
Confidence 46778 9999999999999999977532 1238999999887763 44444443332221
Q ss_pred --CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcC
Q 036742 459 --VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKED 536 (629)
Q Consensus 459 --~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~keg 536 (629)
...+||||||+|.|+.++|++|+++||+++.+++||++||++..++++|+|||+.+.|.+++.+++..+|..+|.+++
T Consensus 627 ~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg 706 (846)
T PRK04132 627 GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 706 (846)
T ss_pred CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 235799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCC---CchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 036742 537 FDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP---IPLGWEEVLIELAAEILADPSPKRLVMVRGKIQKLL 613 (629)
Q Consensus 537 l~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~---~~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL 613 (629)
+.++++.+..|+..++||+|.|+|+||.++..+..++.+.. ....-.+.+.+++..++.+. +...+..+++++
T Consensus 707 i~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~----~~~ar~~l~ell 782 (846)
T PRK04132 707 LELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGN----FLKAREKLREIL 782 (846)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCc----HHHHHHHHHHHH
Confidence 99999999999999999999999999998764432221110 00011224455555454433 667777888887
Q ss_pred -HcCCCHHHHHHHHh
Q 036742 614 -AEFVHPKLILLVMH 627 (629)
Q Consensus 614 -~~~i~~~~i~~~La 627 (629)
..++++..|+..|.
T Consensus 783 ~~~G~~~~~iL~~l~ 797 (846)
T PRK04132 783 LKQGLSGEDVLVQMH 797 (846)
T ss_pred HHhCCCHHHHHHHHH
Confidence 78999988888764
No 49
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.92 E-value=5.1e-24 Score=237.16 Aligned_cols=205 Identities=18% Similarity=0.282 Sum_probs=170.6
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHH--------------------------------cCCC--CeEEEEcCCCCc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVV--------------------------------DGNC--PHILIKGQSGSG 391 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~--------------------------------~g~~--p~ILL~GPPGtG 391 (629)
.+|++||+|+.|.|++|.+.+-+.+..||+ .++. ..+|||||||.|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 499999999999999999998888888885 0111 158899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccc
Q 036742 392 KRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVD 470 (629)
Q Consensus 392 KTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID 470 (629)
|||||+.||+++ |+. |+||||++.+... .+.+.+...+++.... ...++.+|||||||
T Consensus 339 KTTLAHViAkqa-GYs-------------------VvEINASDeRt~~-~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 339 KTTLAHVIAKQA-GYS-------------------VVEINASDERTAP-MVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred hhHHHHHHHHhc-Cce-------------------EEEecccccccHH-HHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 999999999995 665 7999999998864 4445555555555444 33456799999999
Q ss_pred hhhHHHHHHHHHHHhc------cC---------------CCcEEEEEecCCcc-chHHHhhcceEeeccCCCHHHHHHHH
Q 036742 471 KAAEHIQYLIKWIMDG------YT---------------DSCKLILCCEDDVD-IIESVKTHCKVIKVDPPVTHEIMEVL 528 (629)
Q Consensus 471 ~Ls~~~q~aLlrilEe------~~---------------~~~~~ILitN~~~~-I~~aLrSR~~~I~F~ppt~eei~~iL 528 (629)
.-...+.+.++.+++. +. -..+||+|||+.+. -+.+|+--+.++.|.+|+...+.++|
T Consensus 398 Ga~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 398 GAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred CCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHH
Confidence 9998888888888761 11 12369999999887 57788888999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 036742 529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP 571 (629)
Q Consensus 529 ~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~ 571 (629)
+.||.+|++.++..+|..|++++.+|||.|||.||++...+..
T Consensus 478 ~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 478 NEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999998877654
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.92 E-value=1.3e-24 Score=217.08 Aligned_cols=192 Identities=20% Similarity=0.243 Sum_probs=137.7
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...++++.||++|+|++||+++++.++-+++ ....+|+||||||||||||||+.||+++ +..
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~-~~~------------ 77 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL-GVN------------ 77 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC-T--------------
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc-CCC------------
Confidence 4557799999999999999999998887775 2357899999999999999999999997 433
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT----------- 488 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~----------- 488 (629)
+..+++....... + +..+...+ ..+.||||||||+|+...+++|+..||.+.
T Consensus 78 -------~~~~sg~~i~k~~----d-l~~il~~l-----~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~a 140 (233)
T PF05496_consen 78 -------FKITSGPAIEKAG----D-LAAILTNL-----KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNA 140 (233)
T ss_dssp -------EEEEECCC--SCH----H-HHHHHHT-------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-
T ss_pred -------eEeccchhhhhHH----H-HHHHHHhc-----CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEecccccc
Confidence 2333332111111 1 11122221 134599999999999999999999999653
Q ss_pred -------CCcEEEEEecCCccchHHHhhcceE-eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742 489 -------DSCKLILCCEDDVDIIESVKTHCKV-IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM 560 (629)
Q Consensus 489 -------~~~~~ILitN~~~~I~~aLrSR~~~-I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn 560 (629)
...-+|.+|+....+..+|++||.+ .++..|+.+++.+++.+-+...++.++++.+.+|+..|.|+.|-|++
T Consensus 141 r~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 141 RSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred ceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 1233677888899999999999976 57999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 036742 561 ALEACK 566 (629)
Q Consensus 561 lLq~~~ 566 (629)
+|..+.
T Consensus 221 ll~rvr 226 (233)
T PF05496_consen 221 LLRRVR 226 (233)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998864
No 51
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.92 E-value=1.3e-23 Score=242.78 Aligned_cols=257 Identities=18% Similarity=0.214 Sum_probs=178.6
Q ss_pred CchhhhccCCCCCCcccccHHHHH---HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQ---LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~---~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
..+|+++|||.+|+|++|+++++. .|+.++..+..+++||+|||||||||+|+++|+.+.+.
T Consensus 15 ~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--------------- 79 (725)
T PRK13341 15 EAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--------------- 79 (725)
T ss_pred cCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc---------------
Confidence 348999999999999999999884 78899999999999999999999999999999986322
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED-- 499 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~-- 499 (629)
++++++.. .+.+ .+.+.+......... .....||||||||.++...+++|+..++. ..+.+|.+++.
T Consensus 80 -----f~~lna~~-~~i~-dir~~i~~a~~~l~~--~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp 148 (725)
T PRK13341 80 -----FSSLNAVL-AGVK-DLRAEVDRAKERLER--HGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENP 148 (725)
T ss_pred -----ceeehhhh-hhhH-HHHHHHHHHHHHhhh--cCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCCh
Confidence 45566642 1211 112222222111111 12346999999999999999999999884 22333433332
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR-------KEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~-------kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~ 572 (629)
...+.++|+|||.++.|.+++.+++..+|.+++. .+++.+++++++.|++.+.||+|.++++|+.+.......
T Consensus 149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~ 228 (725)
T PRK13341 149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPD 228 (725)
T ss_pred HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC
Confidence 2358899999999999999999999999999887 567889999999999999999999999999865432111
Q ss_pred CCCC--CCchhHHHHHHHHHH--HHhcCCChHHH------------HHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 573 ADDQ--PIPLGWEEVLIELAA--EILADPSPKRL------------VMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 573 ~~~~--~~~~~~ek~l~ei~~--~il~~~s~~~L------------~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..+. .....+++.+.+... ....+...+.| ......+..+|..+.+|..|+.+|-
T Consensus 229 ~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~ 299 (725)
T PRK13341 229 EDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRML 299 (725)
T ss_pred CCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1111 111223333322110 00001111111 1233356678899999999999874
No 52
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.3e-23 Score=216.04 Aligned_cols=202 Identities=20% Similarity=0.209 Sum_probs=142.2
Q ss_pred cCChhhHhHHHHHhhccCchhhhccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHH
Q 036742 328 AFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRAL 395 (629)
Q Consensus 328 ~~de~~~ie~a~v~~~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtL 395 (629)
..+-...+++.++..+...-| +||+|..++++.|++++. ...+.++|++||||||||.|
T Consensus 191 d~~Lve~lerdIl~~np~ikW---------~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 191 DADLVEALERDILQRNPNIKW---------DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred hHHHHHHHHHHHhccCCCcCh---------HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHH
Confidence 334467778878887777777 999999999999999985 33466999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--
Q 036742 396 AMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-- 473 (629)
Q Consensus 396 AraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-- 473 (629)
|+|||.+| +..+ |++.++..+ +.++|....++.++.++...++.. +|||||||.|.
T Consensus 262 AKAvATEc-~tTF----------FNVSsstlt-----SKwRGeSEKlvRlLFemARfyAPS------tIFiDEIDslcs~ 319 (491)
T KOG0738|consen 262 AKAVATEC-GTTF----------FNVSSSTLT-----SKWRGESEKLVRLLFEMARFYAPS------TIFIDEIDSLCSQ 319 (491)
T ss_pred HHHHHHhh-cCeE----------EEechhhhh-----hhhccchHHHHHHHHHHHHHhCCc------eeehhhHHHHHhc
Confidence 99999997 5554 223333222 578888877888888888777654 79999999992
Q ss_pred ----------HHHHHHHHHHHhccC---CC---cEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCC
Q 036742 474 ----------EHIQYLIKWIMDGYT---DS---CKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDF 537 (629)
Q Consensus 474 ----------~~~q~aLlrilEe~~---~~---~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl 537 (629)
....+.|+-.|+... .+ +.|+.+||.+++|+++|++|+..-.|.|++..+-+..|..++-..-.
T Consensus 320 RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~ 399 (491)
T KOG0738|consen 320 RGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE 399 (491)
T ss_pred CCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc
Confidence 223444555555322 22 33444689999999999999987666566555666666666655433
Q ss_pred CCCHHHHHHHHHHccC----CHHHHHH
Q 036742 538 DLSMTFAAKIATKAKQ----NLRKAIM 560 (629)
Q Consensus 538 ~is~e~L~~Ia~~s~G----DiR~AIn 560 (629)
.-++-.++.|++.+.| ||+.+..
T Consensus 400 ~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 400 LDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred CCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 3334447777777655 5554433
No 53
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=7.4e-23 Score=219.44 Aligned_cols=213 Identities=15% Similarity=0.264 Sum_probs=170.0
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCC----C---CCCCcccc---
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACW----N---EKWPTQVL--- 418 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~----~---~~~~~~v~--- 418 (629)
....|..+++|+||+++++.|..++..|+.+| +||+||+|+|||++|+.+|+.+.|.... . ..+..|..
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 34789999999999999999999999999997 8899999999999999999999873210 0 01112222
Q ss_pred ccccCCcceEEEecc-cchh---hHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEE
Q 036742 419 VPVASSAHHVELNVN-LQAN---AKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL 493 (629)
Q Consensus 419 ~~i~sS~~vleInas-~~~~---~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ 493 (629)
+....+..++.+... +..+ ...+..+.++++...+.... .+..+||||||+|.|+..++++|++++|+++..+.|
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 223345556666432 1111 12234566777777666543 345679999999999999999999999999999999
Q ss_pred EEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742 494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564 (629)
Q Consensus 494 ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~ 564 (629)
||+|+.+..++++|+|||..+.|.+++.+++..+|...+...+ ++++.+..+++.++|++|.|+++|+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999998654443 67889999999999999999999953
No 54
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.3e-23 Score=216.35 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=163.5
Q ss_pred CcccccHHHHHHHHHHHH-cCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC----CccccccccCCcceEEEe
Q 036742 358 NGFICHRHEAQLLKELVV-DGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKW----PTQVLVPVASSAHHVELN 431 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~-~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~----~~~v~~~i~sS~~vleIn 431 (629)
+++++++.++..+..|+. .++.+| +||+||||+|||++|.++|++++|........ ..|..+.......+++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 467888998888888887 777899 99999999999999999999998775433211 133444555667899999
Q ss_pred cccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhc
Q 036742 432 VNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510 (629)
Q Consensus 432 as~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR 510 (629)
+++.+... +..+.++++...+.... .+..+||||||+|.|+.+++++|++++|+++.+++|||+||.+..|.++|+||
T Consensus 81 ~s~~~~~~-i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SR 159 (325)
T COG0470 81 PSDLRKID-IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSR 159 (325)
T ss_pred ccccCCCc-chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhc
Confidence 98877643 45677888887766654 35667999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 511 CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 511 ~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
|+.+.|.+++ .+..++..+ ++.+..++..+.||+|.+++.|+++...
T Consensus 160 c~~i~f~~~~------~~~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 160 CQRIRFKPPS------RLEAIAWLE-----DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred ceeeecCCch------HHHHHHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999843 333444433 5678899999999999999999998765
No 55
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=1.3e-22 Score=214.53 Aligned_cols=264 Identities=14% Similarity=0.218 Sum_probs=187.4
Q ss_pred CCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc--cCCcceEEEec
Q 036742 356 SLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV--ASSAHHVELNV 432 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i--~sS~~vleIna 432 (629)
.|++|+||+.+++.|...+..|+++ ++||+||+|+||+++|.++|+.+.|... +..|..|.+ ...+.+..+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~----c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGS----PSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCC----CCCcHhcccccCCCCCEEEEec
Confidence 4799999999999999999999975 5889999999999999999999988752 223333332 23344455544
Q ss_pred cc-chh-----------------hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEE
Q 036742 433 NL-QAN-----------------AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKL 493 (629)
Q Consensus 433 s~-~~~-----------------~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ 493 (629)
.. ..+ ...+-.+.++++...+...+. +..+|+|||++|.|+..++|+|++++|+++ ++.|
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 21 000 011234567787776666543 456899999999999999999999999999 8899
Q ss_pred EEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--
Q 036742 494 ILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYP-- 571 (629)
Q Consensus 494 ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~-- 571 (629)
||+|+.++.|+++|+|||+.+.|.+++.+++.++|...+..++.. ..+..++..++|+++.|+++++........
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~~~~~~~ 233 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQSIPPELL 233 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876544332 235788999999999999998753221000
Q ss_pred --CC---CCCCCchhHHHHH------------HHHHHHHhc-CCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 572 --FA---DDQPIPLGWEEVL------------IELAAEILA-DPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 572 --~~---~~~~~~~~~ek~l------------~ei~~~il~-~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
+. .+......|.+.+ .+....++. ......+.....+....|..++.|+++|..|+
T Consensus 234 ~~~~~~~~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~ 307 (314)
T PRK07399 234 QKLEQPPKSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQKTKNRQLLKQLEKLRKQLLSYVQPRLAWEVTL 307 (314)
T ss_pred HHHHhcccCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 00 0000001111111 111111111 12345566666778889999999999999875
No 56
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=2.6e-22 Score=216.29 Aligned_cols=208 Identities=14% Similarity=0.232 Sum_probs=168.1
Q ss_pred cCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCC--------------CCCcc
Q 036742 352 HQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNE--------------KWPTQ 416 (629)
Q Consensus 352 yrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~--------------~~~~~ 416 (629)
.+|.++++|+||+++++.|.+++..|+++| +||+||+|+||+++|.++|+.++|...... .+..|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999999998 889999999999999999999987642111 11222
Q ss_pred ccccccCCcceEEEecc-cchh---hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742 417 VLVPVASSAHHVELNVN-LQAN---AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC 491 (629)
Q Consensus 417 v~~~i~sS~~vleInas-~~~~---~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~ 491 (629)
..+.......+..+.+. +..+ ...+.++.++++...+..... ...+||||||+|.|+...+++|++++|+++..+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 23333455666667552 1111 122446778888877776654 456799999999999999999999999999999
Q ss_pred EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742 492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
.||++|+.++.+.++|+|||..+.|.+++.+++.++|.... ...+++.+..++..++|+++.|+.+++
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999997642 334555567899999999999999985
No 57
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=3.6e-22 Score=216.93 Aligned_cols=197 Identities=14% Similarity=0.205 Sum_probs=154.1
Q ss_pred CCCcccccHHHHHHHHHHHHcCC---------CCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc---cc
Q 036742 356 SLNGFICHRHEAQLLKELVVDGN---------CPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP---VA 422 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~g~---------~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~---i~ 422 (629)
.|++|+||+.+++.|+.++..+. .+| +||+||+|+|||++|+++|+.++|.......|..|-.|. ..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 36999999999999999999875 665 889999999999999999999988642111122333222 33
Q ss_pred CCcceEEEeccc-chhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 423 SSAHHVELNVNL-QANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 423 sS~~vleInas~-~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
....+..+.+.. ..+ .+.++++...+...+ .+..+|+||||+|.|+..++++|++++|+++..+.||++|+.+
T Consensus 83 ~hpD~~~i~~~~~~i~-----i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 83 THPDVRVVAPEGLSIG-----VDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCCCEEEeccccccCC-----HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 444455554431 122 244566665544433 3456799999999999999999999999999999999999999
Q ss_pred ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
+.++++|+|||+.+.|.+|+.+++.++|.. +.+ ++++.+..++..++|+++.|+.++
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999999999999999999988873 223 578888999999999999887765
No 58
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.89 E-value=1.7e-21 Score=207.18 Aligned_cols=192 Identities=19% Similarity=0.220 Sum_probs=151.9
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
..+|..+|||.+|++++|++++++.|..++. ....+++||+||||||||++|+++|+++ +..+
T Consensus 12 ~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~~~~----------- 79 (328)
T PRK00080 12 EDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-GVNI----------- 79 (328)
T ss_pred cchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-CCCe-----------
Confidence 4568889999999999999999999988885 2335689999999999999999999997 3321
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT----------- 488 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~----------- 488 (629)
..++....... ..+..+...+ ..+.||||||||.+....++.|+..++.+.
T Consensus 80 --------~~~~~~~~~~~-----~~l~~~l~~l-----~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~ 141 (328)
T PRK00080 80 --------RITSGPALEKP-----GDLAAILTNL-----EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAA 141 (328)
T ss_pred --------EEEecccccCh-----HHHHHHHHhc-----ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccc
Confidence 22222111111 1111222211 234699999999999888888888887542
Q ss_pred -------CCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742 489 -------DSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM 560 (629)
Q Consensus 489 -------~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn 560 (629)
....+|++|+....+.++|++|| ..+.|.+|+.+++.++|.+.+...++.++++++..|++.|.|++|.+.+
T Consensus 142 ~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~ 221 (328)
T PRK00080 142 RSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANR 221 (328)
T ss_pred cceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHH
Confidence 22457888898888999999998 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 036742 561 ALEACK 566 (629)
Q Consensus 561 lLq~~~ 566 (629)
+|+.+.
T Consensus 222 ~l~~~~ 227 (328)
T PRK00080 222 LLRRVR 227 (328)
T ss_pred HHHHHH
Confidence 998754
No 59
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.89 E-value=5.4e-22 Score=206.85 Aligned_cols=199 Identities=17% Similarity=0.283 Sum_probs=151.8
Q ss_pred CchhhhccCCCCCCcccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEA---QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~---~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
..+++++.||.+++|++||++++ ..|..+++++.+|.++||||||||||+||+.|+.-....
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~--------------- 189 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH--------------- 189 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---------------
Confidence 35688999999999999999987 578999999999999999999999999999999864222
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED-- 499 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~-- 499 (629)
+..++++.+..... ..+.++++...+..... .++.|||||||++++...|..|+..+|. ..+.+|.+|..
T Consensus 190 --SyrfvelSAt~a~t--~dvR~ife~aq~~~~l~--krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATTENP 261 (554)
T KOG2028|consen 190 --SYRFVELSATNAKT--NDVRDIFEQAQNEKSLT--KRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATTENP 261 (554)
T ss_pred --ceEEEEEeccccch--HHHHHHHHHHHHHHhhh--cceeEEEeHHhhhhhhhhhhcccceecc--CceEEEecccCCC
Confidence 23477887743222 12233333322222221 2334999999999999999999999884 34455554433
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHH------hc--C-----CCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR------KE--D-----FDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~------ke--g-----l~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
...+..+|.|||.++.+.+++.+.+..+|.+... +. + +.+++.++++|+..+.||.|.|+|+|+...
T Consensus 262 SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~ 341 (554)
T KOG2028|consen 262 SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSL 341 (554)
T ss_pred ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 3458999999999999999999999999988432 21 1 246788999999999999999999999863
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=8.8e-21 Score=200.41 Aligned_cols=189 Identities=20% Similarity=0.285 Sum_probs=153.3
Q ss_pred CCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742 356 SLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL 434 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~ 434 (629)
+|++|+||+.+++.|..++..|..+|+ ||+||+|+|||++|+++|+.+.|.... .....+..+.+.+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~------------~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ------------REYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC------------CCCCCeEEecccc
Confidence 589999999999999999999999986 799999999999999999998775321 1222344554422
Q ss_pred chhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceE
Q 036742 435 QANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513 (629)
Q Consensus 435 ~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~ 513 (629)
...+ -.+.++++...+...+ .+..+|+|||++|.|+..++++|++++|+++.++.|||+|+.++.+.++|+|||++
T Consensus 70 ~~~i---~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 70 KKSI---GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred CCCC---CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 2222 1345666666554443 34567999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 514 I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
+.|.+++.+++..+|..... .++++.+..++..++|...+|+..+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~ 192 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIE 192 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999998875442 46788888999999999998876653
No 61
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.87 E-value=2.5e-21 Score=218.16 Aligned_cols=230 Identities=20% Similarity=0.270 Sum_probs=165.4
Q ss_pred ccccCChhhHhHHHHHhhccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 325 EKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 325 ~~~~~de~~~ie~a~v~~~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++....|..-+++. ..-.+.++|.+||||.+|++++|++..++.|+..+......|+||+||||||||++|+++..++.
T Consensus 33 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 33 DKESKKELEKLNKM-RAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred ehhhhHHHHHHHHh-hhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 44444444333332 22356789999999999999999999999999888777777999999999999999999988653
Q ss_pred CCCCCCCCCCccccccccCCcceEEEeccc----chhhHHHHHHHHHHH---H----HHhcc----------CcCCCCeE
Q 036742 405 GDACWNEKWPTQVLVPVASSAHHVELNVNL----QANAKYALMGLVKEI---R----DNLAI----------TPEVSNAM 463 (629)
Q Consensus 405 g~~~~~~~~~~~v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei---~----~~~~~----------~~~~~~kV 463 (629)
.... .+......++++++.. .++.. ...+... . ..+.. .....+.+
T Consensus 112 ~~~~----------s~~~~~~~fi~id~~~~~~~~~~~~---~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~ 178 (531)
T TIGR02902 112 KNPA----------SPFKEGAAFVEIDATTARFDERGIA---DPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGV 178 (531)
T ss_pred hccC----------CCcCCCCCEEEEccccccCCccccc---hhhcCCcccchhccccccccCCcccccCchhhccCCcE
Confidence 1110 0011123367777642 11111 0111100 0 00000 00123459
Q ss_pred EEEEccchhhHHHHHHHHHHHhcc----------------------------CCCcEEEEEe-cCCccchHHHhhcceEe
Q 036742 464 IVIYEVDKAAEHIQYLIKWIMDGY----------------------------TDSCKLILCC-EDDVDIIESVKTHCKVI 514 (629)
Q Consensus 464 IIIDEID~Ls~~~q~aLlrilEe~----------------------------~~~~~~ILit-N~~~~I~~aLrSR~~~I 514 (629)
|||||||.|+...|+.|++++|.. +.++++|++| +.++.+.+++++||..+
T Consensus 179 L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I 258 (531)
T TIGR02902 179 LFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEI 258 (531)
T ss_pred EEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhee
Confidence 999999999999999999998752 1234566654 56788999999999999
Q ss_pred eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742 515 KVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569 (629)
Q Consensus 515 ~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~ 569 (629)
.|++++.+++..+++..+.+.++.+++++++.|+..+. |.|.++|+++.++..+
T Consensus 259 ~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 259 FFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIA 312 (531)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888775 8999999999876543
No 62
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.86 E-value=3e-20 Score=194.71 Aligned_cols=182 Identities=16% Similarity=0.219 Sum_probs=142.3
Q ss_pred CCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742 355 SSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle 429 (629)
++|+||+|++++++.|..++. .+..++++|+||||||||++|+++|+++. ..+ ..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~-~~~-------------------~~ 60 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG-VNL-------------------KI 60 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC-CCE-------------------EE
Confidence 468999999999999999997 34567899999999999999999999973 221 12
Q ss_pred EecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------------------CCc
Q 036742 430 LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------------DSC 491 (629)
Q Consensus 430 Inas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------------~~~ 491 (629)
+......... .+...+. .. ..+.||||||+|.+....++.|+.+++... ...
T Consensus 61 ~~~~~~~~~~-~l~~~l~----~~-----~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 130 (305)
T TIGR00635 61 TSGPALEKPG-DLAAILT----NL-----EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPF 130 (305)
T ss_pred eccchhcCch-hHHHHHH----hc-----ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCe
Confidence 2211100100 1111111 11 224599999999999998999988887443 224
Q ss_pred EEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 492 KLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 492 ~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
.+|.+++....+.+++++|| ..+.|.+++.+++.++|...+...++.+++++++.|++.+.|++|.++++++.+.
T Consensus 131 ~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~ 206 (305)
T TIGR00635 131 TLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVR 206 (305)
T ss_pred EEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57778888888999999999 5689999999999999999999999999999999999999999999999998754
No 63
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=5.9e-21 Score=217.21 Aligned_cols=224 Identities=15% Similarity=0.216 Sum_probs=143.4
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-----eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-----HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-----~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
....+|++||+|++++||+||++.++.|+.|+.....+ .++|+|||||||||+++++|+++ +..+.+. .+.+
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l-~~~~~Ew--~npv 145 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL-GIQVQEW--SNPT 145 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh-hhHHHHH--hhhh
Confidence 34578999999999999999999999999999865443 28999999999999999999986 3322110 0000
Q ss_pred cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhc----cC---cCCCCeEEEEEccchhhHHHHHHHHHHHh-cc--
Q 036742 418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLA----IT---PEVSNAMIVIYEVDKAAEHIQYLIKWIMD-GY-- 487 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~----~~---~~~~~kVIIIDEID~Ls~~~q~aLlrilE-e~-- 487 (629)
.+......+.+...............+.++++..... .. ......||||||+|.+......++..++. .+
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e 225 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVS 225 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhc
Confidence 0000011100000000000000001122333332211 11 12345699999998875433223333333 11
Q ss_pred CCCcEEEEEecCCcc---------------chHHHhh--cceEeeccCCCHHHHHHHHHHHHHhcCCC------C-CHHH
Q 036742 488 TDSCKLILCCEDDVD---------------IIESVKT--HCKVIKVDPPVTHEIMEVLIQIARKEDFD------L-SMTF 543 (629)
Q Consensus 488 ~~~~~~ILitN~~~~---------------I~~aLrS--R~~~I~F~ppt~eei~~iL~~i~~kegl~------i-s~e~ 543 (629)
...+++|+|+++... +.++|++ |+.+|.|+|++..++.++|.+|+.+++.. + ++++
T Consensus 226 ~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~ 305 (637)
T TIGR00602 226 IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTS 305 (637)
T ss_pred CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHH
Confidence 345778887774211 2378887 66789999999999999999999887532 2 4678
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742 544 AAKIATKAKQNLRKAIMALEACKALN 569 (629)
Q Consensus 544 L~~Ia~~s~GDiR~AInlLq~~~~~~ 569 (629)
+..|+..++||+|.||++||+++..+
T Consensus 306 l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 306 VELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 99999999999999999999986654
No 64
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=1.1e-19 Score=193.68 Aligned_cols=196 Identities=15% Similarity=0.235 Sum_probs=151.1
Q ss_pred CCcccc-cHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCC-CCCCCcccccccc---CCcceEEE
Q 036742 357 LNGFIC-HRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACW-NEKWPTQVLVPVA---SSAHHVEL 430 (629)
Q Consensus 357 fddIiG-~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~-~~~~~~~v~~~i~---sS~~vleI 430 (629)
|+.|+| |+.+++.|+..+..|+++|. ||+||+|+||+++|+++|+.+.|.... ...|..|-.|... ....+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 478888 99999999999999999986 899999999999999999999876421 1222333333333 33444444
Q ss_pred ecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhh
Q 036742 431 NVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKT 509 (629)
Q Consensus 431 nas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrS 509 (629)
... ... +..+.++++...+...+ .+..+|+||||+|.|+..++++|++++|+++..+.|||+|+.+..|.++|+|
T Consensus 84 ~~~-~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 84 APD-GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred ccc-ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 442 111 22456677766655443 2456799999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 510 R~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
||.+++|.+++.+++..+|. ++| ++++....++.. .|++++|+.+++
T Consensus 160 Rc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~-~g~~~~A~~l~~ 206 (329)
T PRK08058 160 RCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGL-TNSVEEALALSE 206 (329)
T ss_pred hceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence 99999999999999988885 345 455555556655 478999988775
No 65
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=8.2e-20 Score=186.23 Aligned_cols=186 Identities=17% Similarity=0.260 Sum_probs=147.7
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH-----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV-----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
...||++|+|++||+++++.|+-+++ .....|+|||||||.||||||+.||+++ +-.+ .+ .+
T Consensus 18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~-----------k~-ts 84 (332)
T COG2255 18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GVNL-----------KI-TS 84 (332)
T ss_pred cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCe-----------Ee-cc
Confidence 45789999999999999999998886 2235699999999999999999999997 4432 11 11
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC----------------
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------------- 488 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------------- 488 (629)
+.+++ ..+ ++...+.. -..+.|+|||||+++++.+.+.|+..||.|.
T Consensus 85 Gp~le-----K~g----------DlaaiLt~--Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~l 147 (332)
T COG2255 85 GPALE-----KPG----------DLAAILTN--LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRL 147 (332)
T ss_pred ccccc-----Chh----------hHHHHHhc--CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEec
Confidence 11211 111 11211111 1223599999999999999999999999775
Q ss_pred --CCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742 489 --DSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565 (629)
Q Consensus 489 --~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~ 565 (629)
...-+|.+|+..-.|..+|+.|| ...++..|+.+++.+++.+-+...++.++++...+|+..+.|..|-|+.+|...
T Consensus 148 dLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 148 DLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred cCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 11235778888888999999999 568888999999999999999999999999999999999999999999999654
No 66
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=1.3e-19 Score=191.78 Aligned_cols=192 Identities=18% Similarity=0.214 Sum_probs=152.8
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc---cccCCcceEEE--ecccch
Q 036742 363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV---PVASSAHHVEL--NVNLQA 436 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~---~i~sS~~vleI--nas~~~ 436 (629)
++.+.+.|...+..|+.+| +||+||+|+||+++|.++|+.+.|..... +..|..| ....+.++..+ .+....
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~--~~~c~~c~~~~~g~HPD~~~i~~~p~~~~ 86 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP--AAAQRTRQLIAAGTHPDLQLVSFIPNRTG 86 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC--CCcchHHHHHhcCCCCCEEEEecCCCccc
Confidence 6778899999999999998 88999999999999999999998865311 1122222 23345556666 332211
Q ss_pred -h-hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceE
Q 036742 437 -N-AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV 513 (629)
Q Consensus 437 -~-~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~ 513 (629)
. ...+.++.++++.+.....+. +..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.|+++|+|||+.
T Consensus 87 ~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~ 166 (319)
T PRK08769 87 DKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQR 166 (319)
T ss_pred ccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheE
Confidence 0 123557888888877766654 4568999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 514 I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
+.|.+|+.+++..+|.. .+ +++..+..++..++|.+..|+..+
T Consensus 167 i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 167 LEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred eeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999863 23 455666778899999998888776
No 67
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.4e-20 Score=191.51 Aligned_cols=215 Identities=14% Similarity=0.136 Sum_probs=151.5
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
+.-.-.+++||.|.++.++.|++.+. -| ...++|||||||||||.||+|+|++..+.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At---------- 212 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT---------- 212 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce----------
Confidence 44445688999999999999999996 12 23489999999999999999999986433
Q ss_pred ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh
Q 036742 417 VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD 485 (629)
Q Consensus 417 v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE 485 (629)
++.+..+.. +.+.+.+--+-+++.|..+....++||||||||.+. .++|..+..++.
T Consensus 213 ----------FIrvvgSEl--VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 213 ----------FIRVVGSEL--VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred ----------EEEeccHHH--HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence 445444321 111222333445556667777778899999999992 367777777665
Q ss_pred c-----cCCCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC---
Q 036742 486 G-----YTDSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQ--- 553 (629)
Q Consensus 486 e-----~~~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~G--- 553 (629)
+ ...++.||++||+++-|+++|.+- + ..|+|+.|+.+...+||+-++.+.++ .++ .++.|+..+.|
T Consensus 281 qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sG 358 (406)
T COG1222 281 QLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSG 358 (406)
T ss_pred hccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCch
Confidence 3 247789999999999999999984 4 57999999999999999988887554 343 37788887765
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742 554 -NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA 591 (629)
Q Consensus 554 -DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~ 591 (629)
|++.+..-.-..+. .-.....+..|+.+.+.+++.
T Consensus 359 AdlkaictEAGm~Ai---R~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 359 ADLKAICTEAGMFAI---RERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHHHHHHHhHHHH---HhccCeecHHHHHHHHHHHHh
Confidence 33333322222222 222344455777777777665
No 68
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.83 E-value=1.2e-19 Score=177.62 Aligned_cols=180 Identities=20% Similarity=0.269 Sum_probs=137.5
Q ss_pred HHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccccc---CCcceEEEecccc-hhhHHH
Q 036742 368 QLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVPVA---SSAHHVELNVNLQ-ANAKYA 441 (629)
Q Consensus 368 ~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~i~---sS~~vleInas~~-~~~k~~ 441 (629)
+.|.+.+..+..+| +||+||+|+|||++|+++++.+.+..... ..+..|..|... ....+..+..... .+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~---- 77 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIK---- 77 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCC----
Confidence 46888888998876 88999999999999999999998752111 111222222222 2223344433211 12
Q ss_pred HHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCC
Q 036742 442 LMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520 (629)
Q Consensus 442 l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt 520 (629)
.+.++++...+...+ ....+||||||+|.|+..+++.|++.+|+++..+.||++|+....+.++|++||.++.|.+++
T Consensus 78 -~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 78 -VDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred -HHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 245555555554443 234579999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHH
Q 036742 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKA 558 (629)
Q Consensus 521 ~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~A 558 (629)
.+++.++|... | ++++++..|++.++||+|+|
T Consensus 157 ~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 157 EEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999765 4 68999999999999999975
No 69
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.83 E-value=9.2e-20 Score=175.43 Aligned_cols=156 Identities=22% Similarity=0.388 Sum_probs=116.4
Q ss_pred ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc---ccccccCCcceEEEecccc-h
Q 036742 362 CHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ---VLVPVASSAHHVELNVNLQ-A 436 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~---v~~~i~sS~~vleInas~~-~ 436 (629)
||+.+++.|.+++..++.+| +||+||+|+||+++|+++|+.++|.......+..| ..+......++..+..... .
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 79999999999999999998 68999999999999999999998876543222233 3333445677888876533 1
Q ss_pred hhHHHHHHHHHHHHHHhccCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEee
Q 036742 437 NAKYALMGLVKEIRDNLAITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515 (629)
Q Consensus 437 ~~k~~l~~~lrei~~~~~~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~ 515 (629)
.+ ..+.++++...+...... ..+|+||||+|.|+.+++++|+++||+++.++.|||+|+.+..|+++|+|||+.+.
T Consensus 81 ~i---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~ 157 (162)
T PF13177_consen 81 SI---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIR 157 (162)
T ss_dssp SB---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEE
T ss_pred hh---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEe
Confidence 11 136677777777666544 57799999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 036742 516 VDPPV 520 (629)
Q Consensus 516 F~ppt 520 (629)
|.+++
T Consensus 158 ~~~ls 162 (162)
T PF13177_consen 158 FRPLS 162 (162)
T ss_dssp E----
T ss_pred cCCCC
Confidence 98763
No 70
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=2.1e-19 Score=185.28 Aligned_cols=193 Identities=17% Similarity=0.188 Sum_probs=139.3
Q ss_pred CCCcccccHHHHHHHHHHHH----------c-----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742 356 SLNGFICHRHEAQLLKELVV----------D-----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP 420 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~----------~-----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~ 420 (629)
.+++++|.+.+++.|++++. . +...|+||+||||||||++|+++|+.+.....
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~------------ 71 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV------------ 71 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc------------
Confidence 35889999999988876542 1 23458999999999999999999998743221
Q ss_pred ccCCcceEEEecccchhhHH-HHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--------HHHHHHHHHHHhccCCCc
Q 036742 421 VASSAHHVELNVNLQANAKY-ALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--------EHIQYLIKWIMDGYTDSC 491 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~-~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--------~~~q~aLlrilEe~~~~~ 491 (629)
.....++++++++..+... .....++++.... .+.||||||||.|. .++++.|++.++.....+
T Consensus 72 -~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 72 -LSKGHLIEVERADLVGEYIGHTAQKTREVIKKA------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred -ccCCceEEecHHHhhhhhccchHHHHHHHHHhc------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 2233466666543211100 0011222222221 23599999999975 457788999999877777
Q ss_pred EEEEEecCCc-----cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----------ccCCH
Q 036742 492 KLILCCEDDV-----DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK----------AKQNL 555 (629)
Q Consensus 492 ~~ILitN~~~-----~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~----------s~GDi 555 (629)
.+|+++.... .+.++|++|| ..+.|++|+.+++.+++++++...++.++++++..|++. +.||.
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~ 224 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNA 224 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchH
Confidence 7777764322 2678999999 679999999999999999999999999999999888654 36999
Q ss_pred HHHHHHHHHHHh
Q 036742 556 RKAIMALEACKA 567 (629)
Q Consensus 556 R~AInlLq~~~~ 567 (629)
|.+.|+++.+..
T Consensus 225 R~~~n~~e~a~~ 236 (261)
T TIGR02881 225 RYVRNIIEKAIR 236 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999988643
No 71
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=3e-19 Score=189.43 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=151.8
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccc---cccccCCcceEEEecccchh
Q 036742 363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQV---LVPVASSAHHVELNVNLQAN 437 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v---~~~i~sS~~vleInas~~~~ 437 (629)
+....+.|...+..|+.+| +||+||.|+||+++|+++|+.+.|..... ..|..|- .+....+..+..+.+.....
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 5677789999999999987 55999999999999999999998864211 2233333 33344566677776532222
Q ss_pred hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeec
Q 036742 438 AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516 (629)
Q Consensus 438 ~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F 516 (629)
+-++.+|++.+.....+. +..+|+|||++|.|+..++|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|
T Consensus 87 ---I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 87 ---IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred ---CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 224677777766655543 5678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 517 ~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
.+++.+++.++|..... .....+..++..++|.+..|+.+++
T Consensus 164 ~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 164 HPPEEQQALDWLQAQSS-----AEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred CCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCCCHHHHHHHhh
Confidence 99999999999986531 2344466677888998888877763
No 72
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=2.3e-19 Score=191.37 Aligned_cols=194 Identities=13% Similarity=0.155 Sum_probs=155.1
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccccc---ccCCcceEEEecccchh
Q 036742 363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVP---VASSAHHVELNVNLQAN 437 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~---i~sS~~vleInas~~~~ 437 (629)
+....+.|.+.+..|+.+| +||+||+|+||+++|.++|+.+.|..... ..|..|-+|. ...+..+..+.+....
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~- 85 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK- 85 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc-
Confidence 5667788999999999997 55999999999999999999998853211 2234444333 4456667777654221
Q ss_pred hHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeec
Q 036742 438 AKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516 (629)
Q Consensus 438 ~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F 516 (629)
..+-++.++++.+.+...+. +..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.|+++|+|||+.+.|
T Consensus 86 -~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~ 164 (334)
T PRK07993 86 -SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYL 164 (334)
T ss_pred -ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccC
Confidence 11335778888777666553 5678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 517 ~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
++++.+++..+|.. + ..++++.+..++..++|++.+|+.+++
T Consensus 165 ~~~~~~~~~~~L~~---~--~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 165 APPPEQYALTWLSR---E--VTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred CCCCHHHHHHHHHH---c--cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999863 2 235677788889999999999988863
No 73
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=2.6e-19 Score=190.54 Aligned_cols=190 Identities=18% Similarity=0.199 Sum_probs=147.4
Q ss_pred HHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCC-CCCCCcccccc---ccCCcceEEEecccchhhHHHH
Q 036742 368 QLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACW-NEKWPTQVLVP---VASSAHHVELNVNLQANAKYAL 442 (629)
Q Consensus 368 ~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~-~~~~~~~v~~~---i~sS~~vleInas~~~~~k~~l 442 (629)
...++++..|+.+| +||+||+|+|||++|+++|+.+.|.... ...|..|.+|. ...+..+..+.+.... +.+-
T Consensus 10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~--~~i~ 87 (328)
T PRK05707 10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD--KTIK 87 (328)
T ss_pred HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC--CCCC
Confidence 35667777888887 7799999999999999999999886421 12233444333 3355566666553211 1122
Q ss_pred HHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCH
Q 036742 443 MGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521 (629)
Q Consensus 443 ~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~ 521 (629)
.+.+|++...+...+ .+..+|+|||++|.|+.+++|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|.+++.
T Consensus 88 id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 88 VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN 167 (328)
T ss_pred HHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence 467788777766654 3566799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
+++..+|..... ..+++.+..++..++|.+..|+.+++
T Consensus 168 ~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 168 EESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred HHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 999999975431 23566677888999999998887653
No 74
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.81 E-value=2.4e-19 Score=180.45 Aligned_cols=183 Identities=17% Similarity=0.197 Sum_probs=139.4
Q ss_pred hhhccCCCCCCcccccHHHHHH---HHHHHHc----CC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742 348 WADKHQPSSLNGFICHRHEAQL---LKELVVD----GN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL 418 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~---Lk~~L~~----g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~ 418 (629)
..+..+-.+|+|+|||++++.. |.++|+. |. ..++|||||||||||++|+++|++..-+
T Consensus 111 ~~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp------------ 178 (368)
T COG1223 111 DREIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP------------ 178 (368)
T ss_pred hhhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc------------
Confidence 3456677899999999998864 4455542 22 3489999999999999999999986433
Q ss_pred ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh------------HHHHHHHHHHHhc
Q 036742 419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA------------EHIQYLIKWIMDG 486 (629)
Q Consensus 419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls------------~~~q~aLlrilEe 486 (629)
++.+++....| .-+.+-.+.+.+.|..+....+||+||||+|.+. .+..|+|+.-|+.
T Consensus 179 --------~l~vkat~liG--ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg 248 (368)
T COG1223 179 --------LLLVKATELIG--EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG 248 (368)
T ss_pred --------eEEechHHHHH--HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC
Confidence 45555532222 1233445566667777777788999999999982 2567888887774
Q ss_pred cC--CCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 487 YT--DSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 487 ~~--~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
.. .++..|.+||.+..+++++|||+. .|+|.-|+.+++..+|...+++..++++-. +++++..+.|
T Consensus 249 i~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g 317 (368)
T COG1223 249 IKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKG 317 (368)
T ss_pred cccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCC
Confidence 43 446678889999999999999995 799999999999999999999988777644 7888888765
No 75
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.80 E-value=8.2e-19 Score=196.39 Aligned_cols=222 Identities=15% Similarity=0.219 Sum_probs=137.4
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcC---C--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDG---N--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g---~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
....+|++||+|++++||+.|+..++.++.||+.. . ...+||+||+||||||++++||+++ +..+.+. .+.+
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-g~~v~Ew--~np~ 80 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-GFEVQEW--INPV 80 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-CCeeEEe--cCCC
Confidence 34678999999999999999999999999999742 2 2357899999999999999999997 5543111 0001
Q ss_pred cccccCCcceEEEecccchhhH-HHHHHHHHHH-HH--HhccC------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc
Q 036742 418 LVPVASSAHHVELNVNLQANAK-YALMGLVKEI-RD--NLAIT------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY 487 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~~k-~~l~~~lrei-~~--~~~~~------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~ 487 (629)
.+..... ...+.......... .--.+.+.++ .. .+... .....+||+|||+..+.......|+.++..+
T Consensus 81 ~~~~~~~-~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~ 159 (519)
T PF03215_consen 81 SFRESDN-QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQY 159 (519)
T ss_pred Ccccccc-ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHH
Confidence 0000000 00000000000000 0001122222 10 11000 1123569999999987433224444444422
Q ss_pred --CCCc-EEEEEecCC---------c--------cchHHHhh--cceEeeccCCCHHHHHHHHHHHHHhc-----C-CCC
Q 036742 488 --TDSC-KLILCCEDD---------V--------DIIESVKT--HCKVIKVDPPVTHEIMEVLIQIARKE-----D-FDL 539 (629)
Q Consensus 488 --~~~~-~~ILitN~~---------~--------~I~~aLrS--R~~~I~F~ppt~eei~~iL~~i~~ke-----g-l~i 539 (629)
...+ ++|++..+. . .+.+.|.. ++..|.|+|.++.-|.+.|.+|+..| + ...
T Consensus 160 l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~ 239 (519)
T PF03215_consen 160 LRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKV 239 (519)
T ss_pred HHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccC
Confidence 2334 666544311 0 13455655 45789999999999999999999988 2 233
Q ss_pred C--HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 540 S--MTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 540 s--~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
+ .++++.|++.+.||||.||+.||+++..
T Consensus 240 p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 240 PDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred CChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 3 4569999999999999999999998874
No 76
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=1.8e-18 Score=183.09 Aligned_cols=190 Identities=13% Similarity=0.134 Sum_probs=150.7
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc---ccCCcceEEEeccc-chh
Q 036742 363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP---VASSAHHVELNVNL-QAN 437 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~---i~sS~~vleInas~-~~~ 437 (629)
+....+.|+..+..++.+| +||+||.|+||+++|+++|+.+.|.......+..|.+|. ...+..+..+.+.. +..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 5677889999999999987 779999999999999999999988753223344454444 33556676776642 222
Q ss_pred hHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeec
Q 036742 438 AKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKV 516 (629)
Q Consensus 438 ~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F 516 (629)
+-++.++++........ .+..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|
T Consensus 88 ---I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 88 ---ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred ---CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 23466677666554443 35568999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742 517 DPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 517 ~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
.+|+.+++.++|.. .++. ....++..++|++..|+.+++
T Consensus 165 ~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 165 TPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred CCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 99999999999863 3443 234678889999998888774
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.79 E-value=6.3e-18 Score=171.99 Aligned_cols=183 Identities=14% Similarity=0.199 Sum_probs=136.2
Q ss_pred CCCCccc--ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 355 SSLNGFI--CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 355 ~tfddIi--G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
.+|++++ ++..++..++.+......++++||||+|||||+|++++++++...+. .+++++.
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~-----------------~v~y~~~ 81 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGR-----------------AVGYVPL 81 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-----------------eEEEEEH
Confidence 3688887 47889999999987666678999999999999999999998743221 2455554
Q ss_pred ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhcc--CCCcEEEEEecCCcc----ch
Q 036742 433 NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGY--TDSCKLILCCEDDVD----II 504 (629)
Q Consensus 433 s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe~--~~~~~~ILitN~~~~----I~ 504 (629)
..... ...++.+.+.. ..+|||||++.+.. ..+..|..+++.. ..++.+|++++.+.. +.
T Consensus 82 ~~~~~-------~~~~~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 82 DKRAW-------FVPEVLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred HHHhh-------hhHHHHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 32111 11112222111 14899999999843 3344444444322 234578888876533 57
Q ss_pred HHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 505 ESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 505 ~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
+.|+||| .++.+.+|+.+++.++|++.+...++.++++++++|++.+.||+|.++++|+.+.
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9999999 8999999999999999999898889999999999999999999999999999864
No 78
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.4e-18 Score=189.21 Aligned_cols=189 Identities=19% Similarity=0.167 Sum_probs=135.4
Q ss_pred cCCCCCCcccccHHHHHHHHHHHH-----------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742 352 HQPSSLNGFICHRHEAQLLKELVV-----------D--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL 418 (629)
Q Consensus 352 yrP~tfddIiG~e~~~~~Lk~~L~-----------~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~ 418 (629)
....+|+||.|+++++..|++.+. - ....+||||||||||||++|+++|++....
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n------------ 495 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN------------ 495 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC------------
Confidence 445678999999999999998885 1 234589999999999999999999997433
Q ss_pred ccccCCcceEEEec----ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHH
Q 036742 419 VPVASSAHHVELNV----NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWI 483 (629)
Q Consensus 419 ~~i~sS~~vleIna----s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlri 483 (629)
++.+.. +.+.|. .-+.+...|..+.....+|||+||||.+.. ...+.|+.-
T Consensus 496 --------FlsvkgpEL~sk~vGe------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtE 561 (693)
T KOG0730|consen 496 --------FLSVKGPELFSKYVGE------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTE 561 (693)
T ss_pred --------eeeccCHHHHHHhcCc------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHH
Confidence 233322 122222 122333344444445568999999999932 356677777
Q ss_pred HhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccCC-HH
Q 036742 484 MDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQN-LR 556 (629)
Q Consensus 484 lEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~GD-iR 556 (629)
|+... .++.||.+||+++.|+++|.+ |+ ..|+++.|+.+...+||+..+++ ++++++ .+..|++.+.|- -.
T Consensus 562 mDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 562 MDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGA 639 (693)
T ss_pred cccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChH
Confidence 77443 566788899999999999999 77 57888999999999999988776 455555 588899887653 24
Q ss_pred HHHHHHHHHHhc
Q 036742 557 KAIMALEACKAL 568 (629)
Q Consensus 557 ~AInlLq~~~~~ 568 (629)
.+.+++|.++..
T Consensus 640 el~~lCq~A~~~ 651 (693)
T KOG0730|consen 640 EIVAVCQEAALL 651 (693)
T ss_pred HHHHHHHHHHHH
Confidence 455566655443
No 79
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.77 E-value=1e-17 Score=182.82 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=140.9
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHH-----cCCCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCc
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVV-----DGNCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPT 415 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~-----~g~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~ 415 (629)
...++|++||+|.+++|+..|+..+..+++|++ ....+ .+||+||+||||||+++.+++++ |..+.+. .+
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-g~~~~Ew--~N 143 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-GYQLIEW--SN 143 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-Cceeeee--cC
Confidence 345789999999999999999999999999998 44444 58899999999999999999997 6654211 11
Q ss_pred cccccccCCcceEEEecccchhhH-HHHHHHHHHHHH---------HhccCcCCCCeEEEEEccchhhHH-HHHHHHHHH
Q 036742 416 QVLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRD---------NLAITPEVSNAMIVIYEVDKAAEH-IQYLIKWIM 484 (629)
Q Consensus 416 ~v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~---------~~~~~~~~~~kVIIIDEID~Ls~~-~q~aLlril 484 (629)
.+.+...+.-+- .....+.. .-....++.+.. .........+++|+|||+....-. ....|+.++
T Consensus 144 pi~~~~~~~~h~----~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL 219 (634)
T KOG1970|consen 144 PINLKEPENLHN----ETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVL 219 (634)
T ss_pred Cccccccccccc----cchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHH
Confidence 110000000000 00000100 000111111111 111112234569999999887432 444444444
Q ss_pred hccC--CCcEEE-EEecCCc-------c-chHH--HhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCC------HHHHH
Q 036742 485 DGYT--DSCKLI-LCCEDDV-------D-IIES--VKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS------MTFAA 545 (629)
Q Consensus 485 Ee~~--~~~~~I-LitN~~~-------~-I~~a--LrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is------~e~L~ 545 (629)
..|. ..+++| ++|+... . .... ..-|...|.|+|..+.-|.+.|.+||..+...+. ...++
T Consensus 220 ~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 220 RLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred HHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 4332 333433 3443211 1 2233 3446678999999999999999999999887776 67789
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC
Q 036742 546 KIATKAKQNLRKAIMALEACKALNY 570 (629)
Q Consensus 546 ~Ia~~s~GDiR~AInlLq~~~~~~~ 570 (629)
.|+..++||||.||+.||+....+.
T Consensus 300 ~i~~~s~GDIRsAInsLQlssskg~ 324 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSLQLSSSKGE 324 (634)
T ss_pred HHHHhcCccHHHHHhHhhhhcccCc
Confidence 9999999999999999999865544
No 80
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.76 E-value=1.2e-16 Score=166.62 Aligned_cols=170 Identities=15% Similarity=0.108 Sum_probs=129.3
Q ss_pred HHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHH
Q 036742 366 EAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMG 444 (629)
Q Consensus 366 ~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~ 444 (629)
..+.|...+..|+.+| +||+||.|+||+++|.++|+.+.|.... ..|..+....++.+..+.+..... .+-.+
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~----~~c~~~~~~~HPD~~~i~p~~~~~--~I~id 78 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSP----EAAYKISQKIHPDIHEFSPQGKGR--LHSIE 78 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc----cHHHHHhcCCCCCEEEEecCCCCC--cCcHH
Confidence 4578999999999997 5599999999999999999999886421 123233334456666665532210 12246
Q ss_pred HHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHH
Q 036742 445 LVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHE 523 (629)
Q Consensus 445 ~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~ee 523 (629)
.++++.+.+...+. +..+|+|||++|.|+.+++|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|.++..
T Consensus 79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~~-- 156 (290)
T PRK05917 79 TPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEEK-- 156 (290)
T ss_pred HHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchhc--
Confidence 67777777666553 567899999999999999999999999999999999999999999999999999999987621
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Q 036742 524 IMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR 556 (629)
Q Consensus 524 i~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR 556 (629)
..++++.+..++..+.|+++
T Consensus 157 -------------~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 157 -------------TLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred -------------cCCCHHHHHHHHHHhCCChh
Confidence 23566666666666777663
No 81
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=3.6e-17 Score=171.31 Aligned_cols=192 Identities=13% Similarity=0.164 Sum_probs=137.3
Q ss_pred CcccccHHHHHHHHHHHH----------cC-----CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 358 NGFICHRHEAQLLKELVV----------DG-----NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~----------~g-----~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
++++|.+++++.|.+++. .| ...|+||+||||||||++|+++|+.+..... .
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~-------------~ 89 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY-------------I 89 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC-------------C
Confidence 589999999998877752 11 2337999999999999999999998754332 2
Q ss_pred CCcceEEEecccchhhHH-HHHHHHHHHHHHhccCcCCCCeEEEEEccchh---------hHHHHHHHHHHHhccCCCcE
Q 036742 423 SSAHHVELNVNLQANAKY-ALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA---------AEHIQYLIKWIMDGYTDSCK 492 (629)
Q Consensus 423 sS~~vleInas~~~~~k~-~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L---------s~~~q~aLlrilEe~~~~~~ 492 (629)
..+.+++++..+..+... ......+.+... ..+.||||||+|.+ ..++++.|+..|+.....+.
T Consensus 90 ~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 90 KKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred CCCceEEecHHHHHHHHhccchHHHHHHHHH------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 233466766532111000 000111222221 12469999999987 56788899999998777777
Q ss_pred EEEEecCCc-----cchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------ccCCHHHH
Q 036742 493 LILCCEDDV-----DIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK--------AKQNLRKA 558 (629)
Q Consensus 493 ~ILitN~~~-----~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~--------s~GDiR~A 558 (629)
||++++... .+.++|++||. .|.|++|+.+++.+++...+.+.++.++++....+... ..||.|.+
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~v 243 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSV 243 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHH
Confidence 777775321 13589999995 79999999999999999999999999998877666654 23889999
Q ss_pred HHHHHHHHhc
Q 036742 559 IMALEACKAL 568 (629)
Q Consensus 559 InlLq~~~~~ 568 (629)
.++++.+...
T Consensus 244 rn~ve~~~~~ 253 (287)
T CHL00181 244 RNALDRARMR 253 (287)
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 82
>PRK08727 hypothetical protein; Validated
Probab=99.76 E-value=5.3e-17 Score=164.98 Aligned_cols=183 Identities=15% Similarity=0.215 Sum_probs=133.3
Q ss_pred CCCCcccccH-HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 355 SSLNGFICHR-HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 355 ~tfddIiG~e-~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
.+|+++++.+ ..+..+..+........++|+||+|||||+|+++++.++...+. .+++++..
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~-----------------~~~y~~~~ 78 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR-----------------SSAYLPLQ 78 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------------cEEEEeHH
Confidence 4788887544 45555555544333456999999999999999999998743321 14555542
Q ss_pred cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhc-cCCCcEEEEEecCCcc----chHH
Q 036742 434 LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDG-YTDSCKLILCCEDDVD----IIES 506 (629)
Q Consensus 434 ~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe-~~~~~~~ILitN~~~~----I~~a 506 (629)
... ..+......+. ...+|||||+|.+. ...+..|..+++. +.....+|+++|.... ++++
T Consensus 79 ~~~-------~~~~~~~~~l~-----~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 79 AAA-------GRLRDALEALE-----GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred Hhh-------hhHHHHHHHHh-----cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 211 11122222221 12389999999984 3445566666653 3345679999986543 5799
Q ss_pred Hhhc---ceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 507 VKTH---CKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 507 LrSR---~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
|+|| |.++.|.+|+.+++..+|+++|..+++.++++++++|++.+.||+|.++++|+.+.
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999 78999999999999999999999999999999999999999999999999998764
No 83
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.76 E-value=4.1e-17 Score=174.31 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCC--CCCCCcccccc---ccCCcceEEEeccc--
Q 036742 363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACW--NEKWPTQVLVP---VASSAHHVELNVNL-- 434 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~--~~~~~~~v~~~---i~sS~~vleInas~-- 434 (629)
+....+.|... .++.+| +||+||+|+||+++|+++|+.+.|.... ...|..|..|. ...+..+..+.+..
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~ 83 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA 83 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 44555666664 557775 6799999999999999999999886421 12334444443 33455565554321
Q ss_pred ----------------chhh------HHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742 435 ----------------QANA------KYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC 491 (629)
Q Consensus 435 ----------------~~~~------k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~ 491 (629)
..+. ..+..+.++++......... +..+|+|||++|.|+..+.|+|++++|+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t 163 (342)
T PRK06964 84 AEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGT 163 (342)
T ss_pred ccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCc
Confidence 0110 12446778888777666543 567899999999999999999999999999999
Q ss_pred EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
.|||+|+.++.|+++|+|||+.+.|.+++.+++.++|... ++ ++ ...++..++|.+..|+.++
T Consensus 164 ~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~--~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 164 VFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--AD--ADALLAEAGGAPLAALALA 226 (342)
T ss_pred EEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--Ch--HHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999753 33 32 2345777889888887765
No 84
>PRK06893 DNA replication initiation factor; Validated
Probab=99.76 E-value=3.4e-17 Score=165.94 Aligned_cols=185 Identities=14% Similarity=0.205 Sum_probs=128.8
Q ss_pred CCCCCCcccccHHHH--HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 353 QPSSLNGFICHRHEA--QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 353 rP~tfddIiG~e~~~--~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
.+.+|+++++.+... ..+.........|.++||||||||||+|++++|+++..... .+.++
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-----------------~~~y~ 73 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-----------------TAIYI 73 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------------CeEEe
Confidence 467899999765532 22333333334467899999999999999999999743221 13444
Q ss_pred ecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhccC-CCcE-EEEEecCCcc----
Q 036742 431 NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDGYT-DSCK-LILCCEDDVD---- 502 (629)
Q Consensus 431 nas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe~~-~~~~-~ILitN~~~~---- 502 (629)
....... ...++...+. ...+|||||++.+. ...+..|..+++... .+.. +|++++....
T Consensus 74 ~~~~~~~-------~~~~~~~~~~-----~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~ 141 (229)
T PRK06893 74 PLSKSQY-------FSPAVLENLE-----QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI 141 (229)
T ss_pred eHHHhhh-------hhHHHHhhcc-----cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc
Confidence 4421100 1111222221 23599999999984 333445666665332 2333 4566665433
Q ss_pred chHHHhhcce---EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 503 IIESVKTHCK---VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 503 I~~aLrSR~~---~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
+++.|++|+. ++.+.+|+.+++.++|++.+...++.++++++++|++.+.||+|.++++|+.+.
T Consensus 142 ~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 142 KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4589999985 899999999999999999999999999999999999999999999999998764
No 85
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.74 E-value=1.8e-16 Score=170.02 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=146.3
Q ss_pred hhhccCCCCCCcccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 348 WADKHQPSSLNGFICHRHEAQLLKELVV----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
+...|.| ++++|++..++.|..++. .+..++++|+||||||||++++++++++..... .. ..
T Consensus 8 l~~~~~p---~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~-~~----------~~ 73 (365)
T TIGR02928 8 LEPDYVP---DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAE-DR----------DV 73 (365)
T ss_pred CCCCCCC---CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhh-cc----------CC
Confidence 3467888 588999998888888875 344568999999999999999999998742210 00 00
Q ss_pred CcceEEEecccchhhHHHHHHHHHHHHH-----------------H-hc-cCcCCCCeEEEEEccchhhHH---HHHHHH
Q 036742 424 SAHHVELNVNLQANAKYALMGLVKEIRD-----------------N-LA-ITPEVSNAMIVIYEVDKAAEH---IQYLIK 481 (629)
Q Consensus 424 S~~vleInas~~~~~k~~l~~~lrei~~-----------------~-~~-~~~~~~~kVIIIDEID~Ls~~---~q~aLl 481 (629)
...++++++........++..++..+.. . +. ........||||||+|.+... ....|.
T Consensus 74 ~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~ 153 (365)
T TIGR02928 74 RVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLS 153 (365)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHh
Confidence 0236788875443333333333333311 0 00 001122349999999999532 333444
Q ss_pred HH--HhccC-CCcEEEEEecCCc---cchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHH--
Q 036742 482 WI--MDGYT-DSCKLILCCEDDV---DIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIAT-- 549 (629)
Q Consensus 482 ri--lEe~~-~~~~~ILitN~~~---~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~-- 549 (629)
++ ..... ..+.+|+++|.+. .+.+.+.+|+ ..+.|++|+.+++.++|...+.. ....++++++..++.
T Consensus 154 ~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~ 233 (365)
T TIGR02928 154 RARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALA 233 (365)
T ss_pred ccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHH
Confidence 44 12222 4567889999875 4778888888 47999999999999999998763 223477887766554
Q ss_pred -HccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742 550 -KAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL 589 (629)
Q Consensus 550 -~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei 589 (629)
.+.||+|.++++|..+...+...........++++++..+
T Consensus 234 ~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 234 AQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4579999999999876544332222334445555544443
No 86
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.73 E-value=1.4e-16 Score=182.39 Aligned_cols=206 Identities=16% Similarity=0.146 Sum_probs=139.5
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH----cCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV----DGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
..|.| +.|.|.++.++.|..+|. .....+ ++|+|+||||||++++.++++|....- -.....
T Consensus 750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeae----------qk~lp~ 816 (1164)
T PTZ00112 750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTK----------QKLLPS 816 (1164)
T ss_pred cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHh----------hccCCC
Confidence 56778 788899988777776664 223334 569999999999999999988742110 000111
Q ss_pred cceEEEecccchhhHHHHHHHHHHH--------------H-HHhccC--cCCCCeEEEEEccchhhHHHHHHHHHHHhcc
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEI--------------R-DNLAIT--PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY 487 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei--------------~-~~~~~~--~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~ 487 (629)
..+++|||........+...+.+.+ . ..|... ......||||||||.|....+.+|+.+++.+
T Consensus 817 f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~ 896 (1164)
T PTZ00112 817 FNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP 896 (1164)
T ss_pred ceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh
Confidence 2378899843222111111111111 1 111111 1111239999999999776777787777643
Q ss_pred C---CCcEEEEEecCC---ccchHHHhhcce--EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HccCCHH
Q 036742 488 T---DSCKLILCCEDD---VDIIESVKTHCK--VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIAT---KAKQNLR 556 (629)
Q Consensus 488 ~---~~~~~ILitN~~---~~I~~aLrSR~~--~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~---~s~GDiR 556 (629)
. ..+.||+++|.. ..+++.+++||. .+.|.||+.+++.+||...+......++++++..+|+ ...||+|
T Consensus 897 ~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDAR 976 (1164)
T PTZ00112 897 TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIR 976 (1164)
T ss_pred hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHH
Confidence 2 334567778763 457889999985 4899999999999999999876544689999999988 6789999
Q ss_pred HHHHHHHHHHhc
Q 036742 557 KAIMALEACKAL 568 (629)
Q Consensus 557 ~AInlLq~~~~~ 568 (629)
+||++|..+...
T Consensus 977 KALDILRrAgEi 988 (1164)
T PTZ00112 977 KALQICRKAFEN 988 (1164)
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 87
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.1e-17 Score=178.69 Aligned_cols=184 Identities=19% Similarity=0.198 Sum_probs=134.9
Q ss_pred CCCCcccccHHHHHHHHHHHH----------cCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 355 SSLNGFICHRHEAQLLKELVV----------DGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~----------~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.+|.||.|.+..+..|.+++- .|- ..++|||||||||||.||++||+++ +-.
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vP--------------- 250 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVP--------------- 250 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCc---------------
Confidence 469999999999999998884 232 2379999999999999999999997 443
Q ss_pred CCcceEEEec-ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhccC--
Q 036742 423 SSAHHVELNV-NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGYT-- 488 (629)
Q Consensus 423 sS~~vleIna-s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~~-- 488 (629)
++.|++ ....|.....++.++++... +....++|+||||||.+.+ .....|+..|++..
T Consensus 251 ----f~~isApeivSGvSGESEkkiRelF~~---A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~ 323 (802)
T KOG0733|consen 251 ----FLSISAPEIVSGVSGESEKKIRELFDQ---AKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE 323 (802)
T ss_pred ----eEeecchhhhcccCcccHHHHHHHHHH---HhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 466666 22233332334555555443 3344568999999999954 23345666676543
Q ss_pred ----CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 036742 489 ----DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMA 561 (629)
Q Consensus 489 ----~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInl 561 (629)
..+.||.+||+++.|+++||+ || ..|.+.-|+..+..+||..+|+...+.- +-.+..||.++.|.+.--+..
T Consensus 324 ~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~A 402 (802)
T KOG0733|consen 324 KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMA 402 (802)
T ss_pred ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHH
Confidence 345678889999999999998 45 4688899999999999999998755542 334788999998877655555
Q ss_pred H
Q 036742 562 L 562 (629)
Q Consensus 562 L 562 (629)
|
T Consensus 403 L 403 (802)
T KOG0733|consen 403 L 403 (802)
T ss_pred H
Confidence 4
No 88
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.73 E-value=1.8e-16 Score=159.52 Aligned_cols=182 Identities=15% Similarity=0.214 Sum_probs=137.7
Q ss_pred CCCCCCccc--ccHHHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742 353 QPSSLNGFI--CHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429 (629)
Q Consensus 353 rP~tfddIi--G~e~~~~~Lk~~L~~-g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle 429 (629)
+|.+|++++ ++..++..++.|... ...++++|+||+|||||++|+++++++..... .+++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~-----------------~~~~ 75 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGR-----------------NARY 75 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-----------------cEEE
Confidence 467899987 457788889988873 23457999999999999999999998743321 2556
Q ss_pred EecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCC-c-EEEEEecCCc---cch
Q 036742 430 LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDS-C-KLILCCEDDV---DII 504 (629)
Q Consensus 430 Inas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~-~-~~ILitN~~~---~I~ 504 (629)
+++..... .+ . + .....+|||||+|.+....+..|..+++..... . .+|++++... .+.
T Consensus 76 i~~~~~~~-------~~----~-~----~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 76 LDAASPLL-------AF----D-F----DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred EehHHhHH-------HH----h-h----cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC
Confidence 66532111 00 0 0 112459999999999888888888888754333 3 3555555432 256
Q ss_pred HHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742 505 ESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567 (629)
Q Consensus 505 ~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~ 567 (629)
+.|++|+ ..+.+++|+.++...+|..++.+.++.+++++++.|++.+.||+|.+.++|+.+..
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~ 205 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDR 205 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8888886 78999999999999999999999999999999999999999999999999987643
No 89
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.73 E-value=1.6e-16 Score=178.17 Aligned_cols=188 Identities=15% Similarity=0.149 Sum_probs=125.5
Q ss_pred hhccCCCCCCcccccHHHHHHHHHHHH-----------cCC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 349 ADKHQPSSLNGFICHRHEAQLLKELVV-----------DGN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 349 ~eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
.+.....+|+||+|++++++.|++++. ... ..++||+||||||||++|+++|.++. ..
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-~~--------- 115 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-VP--------- 115 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-CC---------
Confidence 344556789999999999988887764 122 34799999999999999999999863 22
Q ss_pred ccccccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHH
Q 036742 417 VLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIK 481 (629)
Q Consensus 417 v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLl 481 (629)
++.++++...... ......++.+.. ......++||||||+|.+.. ...+.|+
T Consensus 116 ----------~~~i~~~~~~~~~~g~~~~~l~~~f~---~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL 182 (495)
T TIGR01241 116 ----------FFSISGSDFVEMFVGVGASRVRDLFE---QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLL 182 (495)
T ss_pred ----------eeeccHHHHHHHHhcccHHHHHHHHH---HHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHH
Confidence 3444443211100 000112222222 22223457999999999842 2334455
Q ss_pred HHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC---
Q 036742 482 WIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ--- 553 (629)
Q Consensus 482 rilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G--- 553 (629)
..|+.+. ..+.||++||.++.|+++|++ |+ ..+.|+.|+.++..++|+..+....+. ++..+..|+..+.|
T Consensus 183 ~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sg 261 (495)
T TIGR01241 183 VEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSG 261 (495)
T ss_pred hhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCH
Confidence 5555443 346788889999999999997 55 479999999999999999887765443 34457788888765
Q ss_pred -CHHHHHH
Q 036742 554 -NLRKAIM 560 (629)
Q Consensus 554 -DiR~AIn 560 (629)
|++.+++
T Consensus 262 adl~~l~~ 269 (495)
T TIGR01241 262 ADLANLLN 269 (495)
T ss_pred HHHHHHHH
Confidence 4554444
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.73 E-value=2.4e-16 Score=174.74 Aligned_cols=235 Identities=17% Similarity=0.166 Sum_probs=153.3
Q ss_pred CCCccc-c--cHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 356 SLNGFI-C--HRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 356 tfddIi-G--~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
+|++++ | +..+...++.+.... ..+.++||||+|||||+|++++++++..... ...++++
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~---------------~~~v~yi 184 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNP---------------NAKVVYV 184 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCC---------------CCeEEEE
Confidence 677765 3 455677777777642 3457999999999999999999999853210 1226777
Q ss_pred ecccchhh-HHHHH-HHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCcc---
Q 036742 431 NVNLQANA-KYALM-GLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDVD--- 502 (629)
Q Consensus 431 nas~~~~~-k~~l~-~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~~--- 502 (629)
++...... ...+. ....++...+. ...||||||+|.+.. ..+..|..+++. +..+..+|++++.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYR-----SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHh-----cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 76432110 00000 01111222211 234999999999843 345555555542 2344568888877542
Q ss_pred -chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 503 -IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 503 -I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
+.+.|++|+ .++.|.+|+.+++..+|+..+...++.++++++++|++.+.||+|.++.+|..+....... ....+
T Consensus 260 ~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~-~~~it 338 (450)
T PRK00149 260 GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLT-GKPIT 338 (450)
T ss_pred HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhh-CCCCC
Confidence 678899999 5899999999999999999999999999999999999999999999888877654332211 11122
Q ss_pred chhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 036742 579 PLGWEEVLIELAAEILADPSPKRLVMVRGKIQK 611 (629)
Q Consensus 579 ~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~ 611 (629)
...+++++.++....-..-+++.|...+++.|.
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~~ 371 (450)
T PRK00149 339 LELAKEALKDLLAAQKKKITIENIQKVVAEYYN 371 (450)
T ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHcC
Confidence 233444444443211123478888888887775
No 91
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=3.4e-16 Score=183.05 Aligned_cols=207 Identities=16% Similarity=0.166 Sum_probs=152.8
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
..++++.+|.++++++|+++.++.+.+.|..+..+++||+||||||||++|+++|+.+...... ......
T Consensus 170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p----------~~l~~~ 239 (731)
T TIGR02639 170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVP----------ENLKNA 239 (731)
T ss_pred hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCc----------hhhcCC
Confidence 3467899999999999999999999999988888899999999999999999999997432210 011123
Q ss_pred ceEEEecccc-hhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh---------HHHHHHHHHHHhccCCCcEE
Q 036742 426 HHVELNVNLQ-ANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA---------EHIQYLIKWIMDGYTDSCKL 493 (629)
Q Consensus 426 ~vleInas~~-~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls---------~~~q~aLlrilEe~~~~~~~ 493 (629)
.++.++.... .+. ....++.++.+...... ..+.||||||+|.+. .++++.|+..++. ....+
T Consensus 240 ~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~ 314 (731)
T TIGR02639 240 KIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRC 314 (731)
T ss_pred eEEEecHHHHhhhccccchHHHHHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEE
Confidence 3566664211 011 11223445555443322 235699999999994 2457778887763 56778
Q ss_pred EEEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC------HHHH
Q 036742 494 ILCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQN------LRKA 558 (629)
Q Consensus 494 ILitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GD------iR~A 558 (629)
|.+||..+ .++++|.+||..|.|.+|+.+++.++|+.+..+ .++.++++++..++..+... .++|
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 88888632 368999999999999999999999999977653 45788999999999988653 5789
Q ss_pred HHHHHHHHh
Q 036742 559 IMALEACKA 567 (629)
Q Consensus 559 InlLq~~~~ 567 (629)
|.+|+.++.
T Consensus 395 i~lld~a~a 403 (731)
T TIGR02639 395 IDVIDEAGA 403 (731)
T ss_pred HHHHHHhhh
Confidence 999987554
No 92
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=5.3e-16 Score=171.85 Aligned_cols=254 Identities=12% Similarity=0.159 Sum_probs=165.8
Q ss_pred CCCCCccc-c--cHHHHHHHHHHHHc-C-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 354 PSSLNGFI-C--HRHEAQLLKELVVD-G-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 354 P~tfddIi-G--~e~~~~~Lk~~L~~-g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
+.+|+.++ | +..+....+.+... | ..+.++|||++|||||+|++++++++..... ...++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~---------------~~~v~ 175 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFS---------------DLKVS 175 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCC---------------CCeEE
Confidence 35788876 3 33356666666653 2 2457999999999999999999998742110 11266
Q ss_pred EEecccchh-hHHHHH---HHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhc-cCCCcEEEEEecCCc
Q 036742 429 ELNVNLQAN-AKYALM---GLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDG-YTDSCKLILCCEDDV 501 (629)
Q Consensus 429 eInas~~~~-~k~~l~---~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe-~~~~~~~ILitN~~~ 501 (629)
++++.+... ....+. +.+.++...+. ...||||||++.+. ...++.|..+++. +..+..+|++++.+.
T Consensus 176 yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~-----~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 176 YMSGDEFARKAVDILQKTHKEIEQFKNEIC-----QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred EEEHHHHHHHHHHHHHHhhhHHHHHHHHhc-----cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 776632111 000000 11111222221 22499999999985 5567777777764 334557899988765
Q ss_pred c----chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742 502 D----IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDF--DLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572 (629)
Q Consensus 502 ~----I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl--~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~ 572 (629)
. +.+.|++|+ .++.+.+|+.+++.++|++.+...|+ .++++++.+|++.+.||+|.++++|..+...+...
T Consensus 251 ~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~ 330 (450)
T PRK14087 251 ELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQN 330 (450)
T ss_pred HHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcc
Confidence 3 568999998 58999999999999999999988775 69999999999999999999999998775443322
Q ss_pred CCCCCCc-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-----HHHcC-----CCHHHHHHHHh
Q 036742 573 ADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQK-----LLAEF-----VHPKLILLVMH 627 (629)
Q Consensus 573 ~~~~~~~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~-----lL~~~-----i~~~~i~~~La 627 (629)
..+.++. ..+++++.++...--..-+++.|.+++++.|. +.+.. +.|..|...|+
T Consensus 331 ~~~~~it~~~v~~~l~~~~~~~~~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~ 396 (450)
T PRK14087 331 PEEKIITIEIVSDLFRDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLT 396 (450)
T ss_pred cCCCCCCHHHHHHHHhhccccccCCCCHHHHHHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHH
Confidence 1122222 33444554442111112488899999888776 33322 34566666554
No 93
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.72 E-value=2.3e-16 Score=165.01 Aligned_cols=192 Identities=14% Similarity=0.143 Sum_probs=137.8
Q ss_pred CcccccHHHHHHHHHHHH----------cCC-----CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 358 NGFICHRHEAQLLKELVV----------DGN-----CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~----------~g~-----~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
++++|.+++++.|.+++. .|. ..++||+||||||||++|+++|+.+..... .
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~-------------~ 88 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY-------------V 88 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------c
Confidence 468999999988877652 121 227999999999999999999999854332 1
Q ss_pred CCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchh---------hHHHHHHHHHHHhccCCCcE
Q 036742 423 SSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA---------AEHIQYLIKWIMDGYTDSCK 492 (629)
Q Consensus 423 sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L---------s~~~q~aLlrilEe~~~~~~ 492 (629)
..+.++++++.+..+.. ......++++... ..+.||||||++.| ..++++.|+..|+.....+.
T Consensus 89 ~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 89 RKGHLVSVTRDDLVGQYIGHTAPKTKEILKR------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred ccceEEEecHHHHhHhhcccchHHHHHHHHH------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 22235666653211100 0000112222221 12369999999977 45678899999998777777
Q ss_pred EEEEecCC--cc---chHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------ccCCHHHH
Q 036742 493 LILCCEDD--VD---IIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK--------AKQNLRKA 558 (629)
Q Consensus 493 ~ILitN~~--~~---I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~--------s~GDiR~A 558 (629)
+|++++.. +. +.++|++|| ..|.|++|+.+++..++...+.+.+..++++.+..+... ..||+|.+
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~l 242 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSI 242 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHH
Confidence 77776542 22 468999999 579999999999999999999998889999988888775 35999999
Q ss_pred HHHHHHHHhc
Q 036742 559 IMALEACKAL 568 (629)
Q Consensus 559 InlLq~~~~~ 568 (629)
.|.++.+...
T Consensus 243 rn~ve~~~~~ 252 (284)
T TIGR02880 243 RNAIDRARLR 252 (284)
T ss_pred HHHHHHHHHH
Confidence 9999886543
No 94
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.72 E-value=4.1e-16 Score=178.75 Aligned_cols=211 Identities=17% Similarity=0.218 Sum_probs=148.4
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
+..+..+.|||.+|++++|+..++..+...+......+++|+|||||||||+|+++++....... .+...
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~----------~~~~~ 209 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKH----------TPFAE 209 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccC----------CcccC
Confidence 34456689999999999999999888888887666678999999999999999999887532111 00001
Q ss_pred CcceEEEecccch-hhHHHHHH-----------HHHHHHHHhcc-------CcCCCCeEEEEEccchhhHHHHHHHHHHH
Q 036742 424 SAHHVELNVNLQA-NAKYALMG-----------LVKEIRDNLAI-------TPEVSNAMIVIYEVDKAAEHIQYLIKWIM 484 (629)
Q Consensus 424 S~~vleInas~~~-~~k~~l~~-----------~lrei~~~~~~-------~~~~~~kVIIIDEID~Ls~~~q~aLlril 484 (629)
...++.+++.... ....+... ..+........ .....+.||||||++.|....+..|++++
T Consensus 210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL 289 (615)
T ss_pred CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHH
Confidence 1235566553211 00000000 01111111111 11223459999999999999999999999
Q ss_pred hccC--------------------------CCcEEEEE---ecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhc
Q 036742 485 DGYT--------------------------DSCKLILC---CEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKE 535 (629)
Q Consensus 485 Ee~~--------------------------~~~~~ILi---tN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~ke 535 (629)
+... ....++++ ++.+..+.++|++||..+.|.+++.+++..++.+++.+.
T Consensus 290 e~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 290 EDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 7521 11234443 345667899999999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742 536 DFDLSMTFAAKIATKAKQNLRKAIMALEAC 565 (629)
Q Consensus 536 gl~is~e~L~~Ia~~s~GDiR~AInlLq~~ 565 (629)
++.+++++++.|++.+. +.|+++++|+.+
T Consensus 370 ~v~ls~eal~~L~~ys~-~gRraln~L~~~ 398 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI-EGRKAVNILADV 398 (615)
T ss_pred CCCCCHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 88899999988888765 789999999765
No 95
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.72 E-value=4.1e-16 Score=155.98 Aligned_cols=185 Identities=16% Similarity=0.220 Sum_probs=137.8
Q ss_pred CCCCCCccc--ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 353 QPSSLNGFI--CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 353 rP~tfddIi--G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
.+.+|++++ +++.+++.+++++......+++|+||+|||||++|+++++++..... .++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~-----------------~~~~i 72 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGK-----------------SAIYL 72 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----------------cEEEE
Confidence 345788887 36779999999987766778999999999999999999998743221 25666
Q ss_pred ecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhcc-CCCcEEEEEecCCc-c--c-
Q 036742 431 NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGY-TDSCKLILCCEDDV-D--I- 503 (629)
Q Consensus 431 nas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe~-~~~~~~ILitN~~~-~--I- 503 (629)
++...... ..++...+ ....+|||||+|.+.. +.+..|..+++.. .....+|++++... . +
T Consensus 73 ~~~~~~~~-------~~~~~~~~-----~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 73 PLAELAQA-------DPEVLEGL-----EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred eHHHHHHh-------HHHHHhhc-----ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 66422111 01111111 1224999999999975 3367777776642 23357888877543 2 2
Q ss_pred hHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 504 IESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 504 ~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
.+.|.+|+ ..+.+++++.+++..+|...+.+.++.++++++..|++.+.||+|.+.+.|+.+.
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD 206 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 37888886 5899999999999999999988889999999999999999999999999998754
No 96
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=7.3e-16 Score=161.14 Aligned_cols=187 Identities=11% Similarity=0.110 Sum_probs=141.8
Q ss_pred ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccccc---cccCCcceEEEecccch
Q 036742 362 CHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLV---PVASSAHHVELNVNLQA 436 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~---~i~sS~~vleInas~~~ 436 (629)
+++.+++.|+.++..++++| +||+|| +||+++|+++|+.+.|..... ..|..|.+| ....+..+..+.+.. .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-~ 82 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-Q 82 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC-C
Confidence 46788999999999999986 579996 689999999999998865321 123334333 344566677776531 1
Q ss_pred hhHHHHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEee
Q 036742 437 NAKYALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIK 515 (629)
Q Consensus 437 ~~k~~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~ 515 (629)
. +-.+.++++...+...+. +..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.++++|+|||+.+.
T Consensus 83 ~---I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~ 159 (290)
T PRK07276 83 V---IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFH 159 (290)
T ss_pred c---CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeee
Confidence 1 224677887777766543 456799999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 516 VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 516 F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
|.+ +.+++.++|. .+|+ +.+....++ ...|++..|+.++
T Consensus 160 f~~-~~~~~~~~L~----~~g~--~~~~a~~la-~~~~s~~~A~~l~ 198 (290)
T PRK07276 160 FPK-NEAYLIQLLE----QKGL--LKTQAELLA-KLAQSTSEAEKLA 198 (290)
T ss_pred CCC-cHHHHHHHHH----HcCC--ChHHHHHHH-HHCCCHHHHHHHh
Confidence 976 6666666664 4554 344444444 4446799888887
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=5.8e-16 Score=171.18 Aligned_cols=236 Identities=13% Similarity=0.147 Sum_probs=155.6
Q ss_pred CCCCccc-c--cHHHHHHHHHHHHc-----C-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 355 SSLNGFI-C--HRHEAQLLKELVVD-----G-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 355 ~tfddIi-G--~e~~~~~Lk~~L~~-----g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
.+|++++ | +..+...++.+... + ..+.++||||+|+|||+|++++++++.....
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~----------------- 170 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGG----------------- 170 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC-----------------
Confidence 3788876 3 34455666666542 1 2457999999999999999999999853321
Q ss_pred ceEEEecccchhhHHHHHHHHHH-HHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCc
Q 036742 426 HHVELNVNLQANAKYALMGLVKE-IRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDV 501 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lre-i~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~ 501 (629)
.++++++..... .+...++. ....+... .....||||||++.+.. ..++.|..+++. +..+..+|++|+...
T Consensus 171 ~v~yi~~~~f~~---~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p 246 (445)
T PRK12422 171 KILYVRSELFTE---HLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP 246 (445)
T ss_pred CEEEeeHHHHHH---HHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence 256666532111 00111110 00111100 11234999999999953 455666666542 234567899888753
Q ss_pred ----cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCC
Q 036742 502 ----DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL-NYPFA 573 (629)
Q Consensus 502 ----~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~-~~~~~ 573 (629)
.+.++|++|| ..+.+.+|+.+++..+|++.+...++.++++++++|+....+|+|.+++.|..++.. ++.-.
T Consensus 247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~ 326 (445)
T PRK12422 247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKL 326 (445)
T ss_pred HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999 689999999999999999999999999999999999999999999999999877421 12111
Q ss_pred CCCCCc-hhHHHHHHHHHHHH-hcCCChHHHHHHHHHHHH
Q 036742 574 DDQPIP-LGWEEVLIELAAEI-LADPSPKRLVMVRGKIQK 611 (629)
Q Consensus 574 ~~~~~~-~~~ek~l~ei~~~i-l~~~s~~~L~~ir~kly~ 611 (629)
.+.++. ...++++.++...- -...+++.|.+.+++.|.
T Consensus 327 ~~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 327 SHQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYG 366 (445)
T ss_pred hCCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHhC
Confidence 122222 33444454443211 112588899999888876
No 98
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.71 E-value=2.2e-16 Score=173.57 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=138.0
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNE 411 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~ 411 (629)
..++.+++.+.+|+||.|.+..++.|.+++.. | ...++|||||||||||++|+++|+++...
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~----- 244 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT----- 244 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC-----
Confidence 34566788889999999999999999988851 1 23479999999999999999999987332
Q ss_pred CCCccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHH
Q 036742 412 KWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYL 479 (629)
Q Consensus 412 ~~~~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~a 479 (629)
++.+..+..... .......++++ |.......+.||||||||.+.. +.+..
T Consensus 245 ---------------fi~V~~seL~~k~~Ge~~~~vr~l---F~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ 306 (438)
T PTZ00361 245 ---------------FLRVVGSELIQKYLGDGPKLVREL---FRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRT 306 (438)
T ss_pred ---------------EEEEecchhhhhhcchHHHHHHHH---HHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHH
Confidence 334433211000 00001122222 2222234567999999998832 23333
Q ss_pred HHHHH---hcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Q 036742 480 IKWIM---DGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKA 551 (629)
Q Consensus 480 Llril---Ee~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s 551 (629)
+..++ +.+ ..++.||++||.++.+++++.+ |+ ..|.|+.|+.++..++|...+.+..+. ++..+..++..+
T Consensus 307 ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t 385 (438)
T PTZ00361 307 MLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAK 385 (438)
T ss_pred HHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhc
Confidence 44433 322 3467899999999999999875 65 479999999999999999877665442 122356666555
Q ss_pred cC----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742 552 KQ----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA 591 (629)
Q Consensus 552 ~G----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~ 591 (629)
.| |++.+ +..+...+..-.....+..++.+++..+..
T Consensus 386 ~g~sgAdI~~i---~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 386 DELSGADIKAI---CTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CCCCHHHHHHH---HHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 43 44443 333333222222233444666666665543
No 99
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.71 E-value=3e-15 Score=162.35 Aligned_cols=221 Identities=14% Similarity=0.122 Sum_probs=145.2
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
..|.| +.++|.++.++.|..++. .+..++++|+||||||||++++.+++++.... ...
T Consensus 25 ~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~---------------~~~ 86 (394)
T PRK00411 25 PDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA---------------VKV 86 (394)
T ss_pred CCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc---------------CCc
Confidence 44555 678899988888777764 33456899999999999999999999874321 011
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHH---------------Hhc--cCcCCCCeEEEEEccchhh----HHHHHHHHHHH
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRD---------------NLA--ITPEVSNAMIVIYEVDKAA----EHIQYLIKWIM 484 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~---------------~~~--~~~~~~~kVIIIDEID~Ls----~~~q~aLlril 484 (629)
.++++++........++..++..+.. .+. ........||||||+|.+. .+....|.+.+
T Consensus 87 ~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~ 166 (394)
T PRK00411 87 VYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH 166 (394)
T ss_pred EEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh
Confidence 26777774333322222233222211 000 0011223599999999996 34555566665
Q ss_pred hccCC-CcEEEEEecCCc---cchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHc---cC
Q 036742 485 DGYTD-SCKLILCCEDDV---DIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARKE--DFDLSMTFAAKIATKA---KQ 553 (629)
Q Consensus 485 Ee~~~-~~~~ILitN~~~---~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~ke--gl~is~e~L~~Ia~~s---~G 553 (629)
+.... .+.+|+++|... .+.+.+++|+ ..+.|++|+.+++.++|...+... .-.+++++++.+++.+ .|
T Consensus 167 ~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 167 EEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred hccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 54433 566889988764 3667788887 478999999999999999887542 2257899999998887 89
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 036742 554 NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIE 588 (629)
Q Consensus 554 DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~e 588 (629)
|+|.++++|..+...+...........++..++.+
T Consensus 247 d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 247 DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 99999999987554332222233344555544443
No 100
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.71 E-value=4.8e-16 Score=169.54 Aligned_cols=216 Identities=17% Similarity=0.174 Sum_probs=136.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...+|+||+|.+.+++.|++++. -| ...++|||||||||||++|+++|+++. ..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-~~------------ 206 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-AT------------ 206 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-CC------------
Confidence 34567999999999999998874 12 234899999999999999999999863 22
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHH---Hh
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWI---MD 485 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlri---lE 485 (629)
++.+.++.... ..+.+..+.+...|.......++||||||+|.+.. ..+..+..+ ++
T Consensus 207 -------fi~i~~s~l~~--k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld 277 (398)
T PTZ00454 207 -------FIRVVGSEFVQ--KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD 277 (398)
T ss_pred -------EEEEehHHHHH--HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence 33443321100 00001111112222223334567999999998831 233344444 33
Q ss_pred cc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHH
Q 036742 486 GY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN-LRKAI 559 (629)
Q Consensus 486 e~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD-iR~AI 559 (629)
.+ ..++.||++||.++.|++++.+ |+ ..|.|+.|+.++...+++.++.+.++. .+-.+..++..+.|- ...+.
T Consensus 278 ~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~ 356 (398)
T PTZ00454 278 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIA 356 (398)
T ss_pred ccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHH
Confidence 32 2467799999999999999987 66 469999999999999999888765543 223467778776542 33344
Q ss_pred HHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742 560 MALEACKALNYPFADDQPIPLGWEEVLIELAA 591 (629)
Q Consensus 560 nlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~ 591 (629)
++++.+...+...........++++.+..+..
T Consensus 357 ~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 357 AICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 44444433332222233444677777766654
No 101
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.9e-16 Score=172.89 Aligned_cols=175 Identities=17% Similarity=0.180 Sum_probs=130.6
Q ss_pred CCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 355 SSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
++|+||.+++++...|..++.. | ...+||||||||||||.||+|+|++. +.++
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NF------------- 573 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-GANF------------- 573 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-cCce-------------
Confidence 4789999999999999887741 1 12379999999999999999999995 5543
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhcc--C
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDGY--T 488 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe~--~ 488 (629)
+-+..-.. ....+.+.-+.+++.|+.+....++|||+||+|.|. ....+.|+.-|+.. .
T Consensus 574 ------isVKGPEL--lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 574 ------ISVKGPEL--LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred ------EeecCHHH--HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 33222110 011233444666777777777888999999999992 34667777777744 3
Q ss_pred CCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHc
Q 036742 489 DSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKA 551 (629)
Q Consensus 489 ~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s 551 (629)
.++.+|.+||+++.|+++|.+- + ..+.+..|+.++...||+.+.+..+..+++++ ++.|+...
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNT 712 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcc
Confidence 5667888999999999999984 4 35777889999999999999886667776665 88888653
No 102
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=1e-15 Score=169.29 Aligned_cols=236 Identities=13% Similarity=0.162 Sum_probs=150.1
Q ss_pred CCCCccc-c--cHHHHHHHHHHHH-cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 355 SSLNGFI-C--HRHEAQLLKELVV-DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 355 ~tfddIi-G--~e~~~~~Lk~~L~-~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
.+|++++ | +..+......+.. .+.+++++||||+|||||+|++++++++..... ...++++
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~---------------~~~v~yi 166 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP---------------DLRVMYI 166 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCC---------------CCeEEEE
Confidence 3788887 4 3335556666665 333567999999999999999999998743211 1126777
Q ss_pred ecccchhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCc-c--
Q 036742 431 NVNLQANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDV-D-- 502 (629)
Q Consensus 431 nas~~~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~-~-- 502 (629)
++.+.... ..+....+.++...+. ....||||||++.+.. ..+..|..+++. +..+..+|++|+... .
T Consensus 167 ~~~~f~~~~~~~~~~~~~~~f~~~~~----~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~ 242 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLNEFREKYR----KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_pred EHHHHHHHHHHHHhcccHHHHHHHHH----hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence 66421110 0000011112222111 1235999999998842 344455555543 334456888876433 2
Q ss_pred -chHHHhhcce---EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 503 -IIESVKTHCK---VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 503 -I~~aLrSR~~---~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
+.+.++||+. ++.|.+|+.+.+..+|++.+..+++.++++++.+|++.+.||+|.+...|..+...... .+.++
T Consensus 243 ~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~--~~~~i 320 (440)
T PRK14088 243 EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKET--TGEEV 320 (440)
T ss_pred HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHH--hCCCC
Confidence 5788999985 89999999999999999999999999999999999999999999988888765432211 11222
Q ss_pred c-hhHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH
Q 036742 579 P-LGWEEVLIELAAEILA--DPSPKRLVMVRGKIQK 611 (629)
Q Consensus 579 ~-~~~ek~l~ei~~~il~--~~s~~~L~~ir~kly~ 611 (629)
. ....+++.++...--. .-+++.+...+++.|.
T Consensus 321 t~~~a~~~L~~~~~~~~~~~~i~~~~I~~~V~~~~~ 356 (440)
T PRK14088 321 DLKEAILLLKDFIKPNRVKAMDPIDELIEIVAKVTG 356 (440)
T ss_pred CHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHcC
Confidence 2 3334444444221111 1467777777777765
No 103
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.69 E-value=5.7e-16 Score=168.77 Aligned_cols=210 Identities=16% Similarity=0.152 Sum_probs=132.9
Q ss_pred CCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742 354 PSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP 420 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~ 420 (629)
..+++||+|.+..++.|.+++.. ....++|||||||||||++|+++|.++...
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------------- 192 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------------- 192 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC--------------
Confidence 34569999999999999988741 123479999999999999999999987322
Q ss_pred ccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhcc-
Q 036742 421 VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDGY- 487 (629)
Q Consensus 421 i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe~- 487 (629)
++.++++..... .......++.+ |.......+.||||||+|.+. ...+..+..++.+.
T Consensus 193 ------~i~v~~~~l~~~~~g~~~~~i~~~---f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 193 ------FIRVVGSELVQKFIGEGARLVREL---FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred ------EEEeehHHHhHhhccchHHHHHHH---HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 345544321100 00001222222 222223345799999999983 33455555555332
Q ss_pred ----CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CHH
Q 036742 488 ----TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NLR 556 (629)
Q Consensus 488 ----~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----DiR 556 (629)
...+.||++||.++.+++++.+ |+ ..|.|++|+.++..++|+.++.+..+. .+..+..|+..+.| |++
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~ 342 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLK 342 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHH
Confidence 2467899999999999999986 66 579999999999999999877654432 12346778887665 444
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742 557 KAIMALEACKALNYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 557 ~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
.++...-..+.. -........++.+++..+.
T Consensus 343 ~l~~eA~~~a~~---~~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 343 AICTEAGMFAIR---DDRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred HHHHHHHHHHHH---cCCCCcCHHHHHHHHHHHh
Confidence 433332222221 1222334456666665554
No 104
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.9e-16 Score=171.94 Aligned_cols=179 Identities=19% Similarity=0.167 Sum_probs=125.3
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHH-----------cCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742 351 KHQPSSLNGFICHRHEAQLLKELVV-----------DGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL 418 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk~~L~-----------~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~ 418 (629)
+..-++|+|+.|.+++++.|++.+. .|++| +|||.||||||||.||+|+|.+..-+.+
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF---------- 366 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFF---------- 366 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeE----------
Confidence 3445689999999999999998885 55665 8999999999999999999998633322
Q ss_pred ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhcc
Q 036742 419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDGY 487 (629)
Q Consensus 419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe~ 487 (629)
+...+. .+...+.--.+.++..|..+....+|||||||+|.+. ....|.|+--|+.+
T Consensus 367 ----------~~sGSE--FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF 434 (752)
T KOG0734|consen 367 ----------YASGSE--FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF 434 (752)
T ss_pred ----------eccccc--hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc
Confidence 111110 0011111112334444555555667899999999992 23456666667766
Q ss_pred CCC--cEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC
Q 036742 488 TDS--CKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQ 553 (629)
Q Consensus 488 ~~~--~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~G 553 (629)
..+ +.||.+||.++.++++|.+ || ..|.++.|+..-..+||...+.+ +.++++ .+..||+.+.|
T Consensus 435 ~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~G 504 (752)
T KOG0734|consen 435 KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPG 504 (752)
T ss_pred CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCC
Confidence 544 5566689999999999987 45 46889999999999999988876 444433 36677877665
No 105
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.69 E-value=1.4e-15 Score=166.40 Aligned_cols=234 Identities=18% Similarity=0.207 Sum_probs=149.3
Q ss_pred CCCccc-cc--HHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 356 SLNGFI-CH--RHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 356 tfddIi-G~--e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
+|++++ |. ..+...++.+.... ....++||||+|+|||+|++++++++..... ...++++
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~---------------~~~v~yi 172 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNP---------------NAKVVYV 172 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCC---------------CCcEEEE
Confidence 677754 43 33555666666542 2346899999999999999999999853210 1126777
Q ss_pred ecccchhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCcc---
Q 036742 431 NVNLQANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDVD--- 502 (629)
Q Consensus 431 nas~~~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~~--- 502 (629)
++...... ..+....+..+...+. ...+|||||+|.+.. ..+..|..+++. +..+..+|++++....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYR-----SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHH-----hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 76421110 0000001111111111 124999999999843 345556666553 2355678888886432
Q ss_pred -chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 503 -IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 503 -I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
+.+.|++|+ ..+.|.+|+.+++..+|+..+...++.++++++++|++...||+|.+...|..+...+.. .+.++
T Consensus 248 ~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~--~~~~i 325 (405)
T TIGR00362 248 GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASL--TGKPI 325 (405)
T ss_pred hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hCCCC
Confidence 568899998 479999999999999999999999999999999999999999999877776654432211 11222
Q ss_pred c-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 036742 579 P-LGWEEVLIELAAEILADPSPKRLVMVRGKIQK 611 (629)
Q Consensus 579 ~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~ 611 (629)
. ..+++++.++...-...-+++.+..++++.|.
T Consensus 326 t~~~~~~~L~~~~~~~~~~it~~~I~~~Va~~~~ 359 (405)
T TIGR00362 326 TLELAKEALKDLLRAKKKEITIENIQEVVAKYYN 359 (405)
T ss_pred CHHHHHHHHHHhccccCCCCCHHHHHHHHHHHcC
Confidence 2 23344444432211123477888888777665
No 106
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=9.9e-17 Score=164.24 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=125.1
Q ss_pred hHHHHHhhccCchhhhccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 335 IQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 335 ie~a~v~~~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAke 402 (629)
+.-+++.+...+-| +||.|.+.+++.|++.+- ...+.+|||||||||||+.||+|+|.+
T Consensus 119 L~sAIv~EKPNVkW---------sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 119 LNSAIVREKPNVKW---------SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhhhhhccCCCCch---------hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 44456777777777 999999999999999883 223568999999999999999999999
Q ss_pred HhCCCCCCCCCCccccccccCCcceEEEec----ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh----hH
Q 036742 403 IYGDACWNEKWPTQVLVPVASSAHHVELNV----NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA----AE 474 (629)
Q Consensus 403 L~g~~~~~~~~~~~v~~~i~sS~~vleIna----s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L----s~ 474 (629)
.. ..+ +-+.. +.+.|.... +++ +.|.......+.||||||||.+ ..
T Consensus 190 An-STF-------------------FSvSSSDLvSKWmGESEk---LVk---nLFemARe~kPSIIFiDEiDslcg~r~e 243 (439)
T KOG0739|consen 190 AN-STF-------------------FSVSSSDLVSKWMGESEK---LVK---NLFEMARENKPSIIFIDEIDSLCGSRSE 243 (439)
T ss_pred cC-Cce-------------------EEeehHHHHHHHhccHHH---HHH---HHHHHHHhcCCcEEEeehhhhhccCCCC
Confidence 74 332 33333 233443322 222 2334444556679999999998 23
Q ss_pred HHHHHHHHHHhcc----------CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHH-HHHHHHHhcCCCCCHHH
Q 036742 475 HIQYLIKWIMDGY----------TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIME-VLIQIARKEDFDLSMTF 543 (629)
Q Consensus 475 ~~q~aLlrilEe~----------~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~-iL~~i~~kegl~is~e~ 543 (629)
+..++-+++..++ ...+.++.+||-++.++.+||+||....+.|++....+. .++-.+..-...+++..
T Consensus 244 nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d 323 (439)
T KOG0739|consen 244 NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQD 323 (439)
T ss_pred CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhh
Confidence 3445555554332 244566678999999999999999765555555444443 34333444445678899
Q ss_pred HHHHHHHccC
Q 036742 544 AAKIATKAKQ 553 (629)
Q Consensus 544 L~~Ia~~s~G 553 (629)
+.+|+..+.|
T Consensus 324 ~~eL~~kTeG 333 (439)
T KOG0739|consen 324 FKELARKTEG 333 (439)
T ss_pred HHHHHhhcCC
Confidence 9999999876
No 107
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.68 E-value=9.7e-16 Score=170.79 Aligned_cols=182 Identities=14% Similarity=0.123 Sum_probs=126.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHH--------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVV--------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~--------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
...+|+||.|.+.+++.|.+... -| ...++|||||||||||++|+++|.++ +..
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-~~~--------------- 286 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-QLP--------------- 286 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCC---------------
Confidence 45689999999998888876432 12 23479999999999999999999997 433
Q ss_pred CCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH------------HHHHHHHHHHhc
Q 036742 423 SSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE------------HIQYLIKWIMDG 486 (629)
Q Consensus 423 sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~------------~~q~aLlrilEe 486 (629)
++.+++.. ..|.. ...++.+.. ......++||||||||.+.. .....|+..+++
T Consensus 287 ----~~~l~~~~l~~~~vGes---e~~l~~~f~---~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~ 356 (489)
T CHL00195 287 ----LLRLDVGKLFGGIVGES---ESRMRQMIR---IAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE 356 (489)
T ss_pred ----EEEEEhHHhcccccChH---HHHHHHHHH---HHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc
Confidence 34444421 11111 122333322 22234567999999998733 233456666666
Q ss_pred cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccC----CHHHH
Q 036742 487 YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFD-LSMTFAAKIATKAKQ----NLRKA 558 (629)
Q Consensus 487 ~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~-is~e~L~~Ia~~s~G----DiR~A 558 (629)
....+.||+|||.++.|++++.+ || ..+.|+.|+.++..++++..+.+.+.. ..+..+..|+..+.| ||+.+
T Consensus 357 ~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~l 436 (489)
T CHL00195 357 KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQS 436 (489)
T ss_pred CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHH
Confidence 66667788899999999999987 77 578899999999999999888775433 335568888888765 55544
Q ss_pred HH
Q 036742 559 IM 560 (629)
Q Consensus 559 In 560 (629)
+.
T Consensus 437 v~ 438 (489)
T CHL00195 437 II 438 (489)
T ss_pred HH
Confidence 43
No 108
>CHL00176 ftsH cell division protein; Validated
Probab=99.68 E-value=2.5e-15 Score=172.24 Aligned_cols=214 Identities=15% Similarity=0.096 Sum_probs=137.5
Q ss_pred CCCCCcccccHHHHHHHHHHHH---c---------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 354 PSSLNGFICHRHEAQLLKELVV---D---------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~---~---------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
..+|+||+|.+++++.|.+++. . ....++||+||||||||++|+++|.++ +..
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~~p-------------- 243 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-EVP-------------- 243 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-CCC--------------
Confidence 4688999999999988887763 1 113479999999999999999999986 332
Q ss_pred cCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HH---HHHHHHHHhc
Q 036742 422 ASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HI---QYLIKWIMDG 486 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~---q~aLlrilEe 486 (629)
++.++++...... ......++. .|.......++||||||+|.+.. .. .+.|+..++.
T Consensus 244 -----~i~is~s~f~~~~~g~~~~~vr~---lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 244 -----FFSISGSEFVEMFVGVGAARVRD---LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred -----eeeccHHHHHHHhhhhhHHHHHH---HHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence 3444443211100 000112222 22222334567999999999832 22 3334444444
Q ss_pred cC--CCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHH
Q 036742 487 YT--DSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NLRKAIM 560 (629)
Q Consensus 487 ~~--~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-DiR~AIn 560 (629)
+. ..+.||++||.++.++++|+++ + ..+.|..|+.+++.++|+.++.+..+ .++..+..|++.+.| +.+.+-+
T Consensus 316 ~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~ 394 (638)
T CHL00176 316 FKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLAN 394 (638)
T ss_pred ccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHH
Confidence 33 4567888999999999999974 4 57999999999999999998877433 245568889998887 4444444
Q ss_pred HHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742 561 ALEACKALNYPFADDQPIPLGWEEVLIELAA 591 (629)
Q Consensus 561 lLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~ 591 (629)
++..++..+........+..++++++..+..
T Consensus 395 lvneAal~a~r~~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 395 LLNEAAILTARRKKATITMKEIDTAIDRVIA 425 (638)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Confidence 4444333222222233444667776666543
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=1.7e-15 Score=179.07 Aligned_cols=206 Identities=15% Similarity=0.189 Sum_probs=150.0
Q ss_pred hhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcce
Q 036742 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHH 427 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~v 427 (629)
.+++.+|.++++++|+++.+..+.+++..+..+++||+||||||||++|+.+|+.+....+. .......+
T Consensus 177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~----------~~l~~~~i 246 (852)
T TIGR03345 177 LTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP----------PALRNVRL 246 (852)
T ss_pred HHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC----------ccccCCeE
Confidence 56889999999999999999999999988888999999999999999999999987433220 11122224
Q ss_pred EEEeccc---chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEEEE
Q 036742 428 VELNVNL---QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLILC 496 (629)
Q Consensus 428 leInas~---~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~ILi 496 (629)
+.++... .......+.+.++.++..... ...+.||||||+|.+.. ++.+.|+..++. ....+|.+
T Consensus 247 ~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga 322 (852)
T TIGR03345 247 LSLDLGLLQAGASVKGEFENRLKSVIDEVKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA 322 (852)
T ss_pred EEeehhhhhcccccchHHHHHHHHHHHHHHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence 4333321 001111233455555544322 12456999999999953 233467777763 56778888
Q ss_pred ecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCH------HHHHHH
Q 036742 497 CEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQNL------RKAIMA 561 (629)
Q Consensus 497 tN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GDi------R~AInl 561 (629)
|+..+ .++++|.+||..|.|.+|+.++...+|+.+... .++.++++++..++..+.+.+ .+||.+
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdl 402 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSL 402 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHH
Confidence 87632 379999999999999999999999997665532 468899999999999998654 589999
Q ss_pred HHHHHh
Q 036742 562 LEACKA 567 (629)
Q Consensus 562 Lq~~~~ 567 (629)
|+.++.
T Consensus 403 ldea~a 408 (852)
T TIGR03345 403 LDTACA 408 (852)
T ss_pred HHHHHH
Confidence 987554
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=99.68 E-value=2.3e-15 Score=153.12 Aligned_cols=183 Identities=14% Similarity=0.169 Sum_probs=132.4
Q ss_pred CCCCccc-c-cHHHHHHHHHHHHcC-C--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742 355 SSLNGFI-C-HRHEAQLLKELVVDG-N--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429 (629)
Q Consensus 355 ~tfddIi-G-~e~~~~~Lk~~L~~g-~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle 429 (629)
-+|++++ | +..++..++.|.... . .+.++|+||+|+|||+|++++++++..... .+++
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~-----------------~v~y 78 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGE-----------------PAVY 78 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-----------------cEEE
Confidence 4788886 3 344556666665431 2 357899999999999999999988642211 2566
Q ss_pred EecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHhcc-CCCcEEEEEecCCcc----
Q 036742 430 LNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMDGY-TDSCKLILCCEDDVD---- 502 (629)
Q Consensus 430 Inas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilEe~-~~~~~~ILitN~~~~---- 502 (629)
+++.+... ....+.+.+.. ..+|+|||++.+. ...+..|..+++.. ..+..+|++++....
T Consensus 79 ~~~~~~~~-------~~~~~~~~~~~-----~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~ 146 (234)
T PRK05642 79 LPLAELLD-------RGPELLDNLEQ-----YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPI 146 (234)
T ss_pred eeHHHHHh-------hhHHHHHhhhh-----CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc
Confidence 66632111 01112222211 1389999999884 34456677777643 345678888876432
Q ss_pred chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 503 IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 503 I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
+.+.|+||+ .++.+.+|+.+++..+|+..+...++.++++++++|++.+.||+|.++++|+.+.
T Consensus 147 ~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 147 KLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred cCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 479999999 8899999999999999998888889999999999999999999999999998764
No 111
>PRK06620 hypothetical protein; Validated
Probab=99.68 E-value=1.6e-15 Score=152.54 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=120.9
Q ss_pred CCCcccc---cHHHHHHHHHHHHc-C-CC--CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 356 SLNGFIC---HRHEAQLLKELVVD-G-NC--PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 356 tfddIiG---~e~~~~~Lk~~L~~-g-~~--p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
+|++++. ++.+...+++|... + .. +.++||||||||||||++++++.. +.. +
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~~~-------------------~- 72 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS-NAY-------------------I- 72 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc-CCE-------------------E-
Confidence 5677653 56688888888863 2 11 569999999999999999988764 211 1
Q ss_pred EEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCCcc--chH
Q 036742 429 ELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDDVD--IIE 505 (629)
Q Consensus 429 eInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~~~--I~~ 505 (629)
+... ... .+. + ....+|+|||||.+.. ...+.+..+.| .+..+|++++.... -.+
T Consensus 73 -~~~~-~~~---------~~~---~-----~~~d~lliDdi~~~~~~~lf~l~N~~~e---~g~~ilits~~~p~~l~l~ 130 (214)
T PRK06620 73 -IKDI-FFN---------EEI---L-----EKYNAFIIEDIENWQEPALLHIFNIINE---KQKYLLLTSSDKSRNFTLP 130 (214)
T ss_pred -cchh-hhc---------hhH---H-----hcCCEEEEeccccchHHHHHHHHHHHHh---cCCEEEEEcCCCccccchH
Confidence 1000 000 000 0 1224899999998753 23333344444 34466776654332 138
Q ss_pred HHhhcce---EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 506 SVKTHCK---VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 506 aLrSR~~---~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
+|+||+. ++.+.+|+.+++..++++.+...++.++++++++|+..+.||+|.++++|+.+.
T Consensus 131 ~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 131 DLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred HHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999997 999999999999999999999889999999999999999999999999999864
No 112
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=1.1e-14 Score=155.07 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=126.2
Q ss_pred cHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC--CCCCc---cccccccCCcceEEEeccc--
Q 036742 363 HRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN--EKWPT---QVLVPVASSAHHVELNVNL-- 434 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~--~~~~~---~v~~~i~sS~~vleInas~-- 434 (629)
+....+.|... .++.+| +||+||+|+|||++|+.+|+.+.|..... ..|.. |..+....+..+.++.+..
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~ 83 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE 83 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence 34444455544 467776 78999999999999999999998753211 12333 3444455677788887632
Q ss_pred -chhh--HHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhc
Q 036742 435 -QANA--KYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTH 510 (629)
Q Consensus 435 -~~~~--k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR 510 (629)
..+. ..+-++.+|++.......+ .+..+|+|||+++.|+..++++|++++|++...+.||++|+.+..+.++|+||
T Consensus 84 ~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 84 PENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred ccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH
Confidence 1121 1133577788776666554 35567999999999999999999999999988899999999999999999999
Q ss_pred ceEeeccCCCHHHHHHHHHH
Q 036742 511 CKVIKVDPPVTHEIMEVLIQ 530 (629)
Q Consensus 511 ~~~I~F~ppt~eei~~iL~~ 530 (629)
|+.+.|.+++.+++..+|..
T Consensus 164 c~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 CRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhhhcCCCCCHHHHHHHHHh
Confidence 99999999999999988864
No 113
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8e-16 Score=154.63 Aligned_cols=211 Identities=15% Similarity=0.149 Sum_probs=138.5
Q ss_pred CCCCCcccccHHHHHHHHHHHH-----------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742 354 PSSLNGFICHRHEAQLLKELVV-----------D--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP 420 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~-----------~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~ 420 (629)
..+..||.|.+-.++.+++.+. - ....++|+|||||||||.||+++|+.....
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~-------------- 216 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA-------------- 216 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--------------
Confidence 3466999999999999998885 1 233489999999999999999999875222
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhc---
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDG--- 486 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe--- 486 (629)
++.++.+.. ..+.+.+--+.++..|.+.....+.||||||||.+. .+.|..|..++..
T Consensus 217 ------firvvgsef--vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 217 ------FIRVVGSEF--VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred ------eeeeccHHH--HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 333333211 111222333445556666666777899999999983 3566666666543
Q ss_pred c--CCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHH----ccCCHH
Q 036742 487 Y--TDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATK----AKQNLR 556 (629)
Q Consensus 487 ~--~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~----s~GDiR 556 (629)
+ ..++.+|++||+.+.++++|.+-. ..|+|+.|+..+-+-++..++.+.++. ++ .++.++.. ++.||
T Consensus 289 fdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls--~~vdle~~v~rpdkis~adi- 365 (408)
T KOG0727|consen 289 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS--DEVDLEDLVARPDKISGADI- 365 (408)
T ss_pred cCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC--cccCHHHHhcCccccchhhH-
Confidence 3 366789999999999999998754 579999999999999999998886553 32 24444322 22333
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742 557 KAIMALEACKALNYPFADDQPIPLGWEEVLIELAA 591 (629)
Q Consensus 557 ~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~ 591 (629)
..++|.+...+...........++++.....++
T Consensus 366 --~aicqeagm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 366 --NAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred --HHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 333444433333222223344666666555443
No 114
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.2e-16 Score=162.94 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=126.0
Q ss_pred CCCCcccccHHHHHHHHHHHH----------c----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742 355 SSLNGFICHRHEAQLLKELVV----------D----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP 420 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~----------~----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~ 420 (629)
++|+||.|.+.+++.|++.+. . +...+||||||||||||.+|+++|++. |..+. +
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fI----------n 157 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-GANFI----------N 157 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-CCCcc----------e
Confidence 468999999999999999884 1 223489999999999999999999996 44331 1
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH----HHHHHHHHHHhcc---------
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE----HIQYLIKWIMDGY--------- 487 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~----~~q~aLlrilEe~--------- 487 (629)
+..+.-. +.+.|. ..+-+...|......++.||||||+|.+.. ..+++....-.++
T Consensus 158 v~~s~lt-----~KWfgE------~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s 226 (386)
T KOG0737|consen 158 VSVSNLT-----SKWFGE------AQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS 226 (386)
T ss_pred eeccccc-----hhhHHH------HHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC
Confidence 1111100 233332 223333345555567788999999999852 2233333322221
Q ss_pred --CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHH
Q 036742 488 --TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRK 557 (629)
Q Consensus 488 --~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~ 557 (629)
...+.|+.+||++.++++++.+|+ ..++++-|+..+..+||+-++..+.+. ++-.+..|+..+.|.-..
T Consensus 227 ~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGS 298 (386)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHH
Confidence 122445558999999999999997 689999999999999999999998775 444588899998875443
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=5.2e-15 Score=167.27 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=152.0
Q ss_pred CCCcccc---cHHHHHHHHHHHHc-C-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 356 SLNGFIC---HRHEAQLLKELVVD-G-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 356 tfddIiG---~e~~~~~Lk~~L~~-g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
+|++++. +..+...+..++.. + ..+.++|||++|||||+|+++|++++..... ...++++
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~---------------g~~V~Yi 350 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP---------------GTRVRYV 350 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCC---------------CCeEEEe
Confidence 6788763 33344455555543 2 2345999999999999999999998742110 1126777
Q ss_pred ecccchhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhcc-CCCcEEEEEecCCc----
Q 036742 431 NVNLQANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGY-TDSCKLILCCEDDV---- 501 (629)
Q Consensus 431 nas~~~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe~-~~~~~~ILitN~~~---- 501 (629)
++...... ..+....+..+.+.+. ...||||||++.+.. ..+..|..+++.. ..+..+|++++...
T Consensus 351 taeef~~el~~al~~~~~~~f~~~y~-----~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 351 SSEEFTNEFINSIRDGKGDSFRRRYR-----EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred eHHHHHHHHHHHHHhccHHHHHHHhh-----cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 66321110 0000011111111111 124999999999833 3455666666533 34567888888753
Q ss_pred cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 502 DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 502 ~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
.+++.|++|+ .++.+.+|+.+.+..||+..+...++.++++++.+|+....+|+|.+..+|..+...... .+..+
T Consensus 426 ~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~--~~~~i 503 (617)
T PRK14086 426 TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASL--NRQPV 503 (617)
T ss_pred hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh--hCCCC
Confidence 3678999998 579999999999999999999999999999999999999999999988888765432221 12222
Q ss_pred c-hhHHHHHHHHHHHH-hcCCChHHHHHHHHHHHH
Q 036742 579 P-LGWEEVLIELAAEI-LADPSPKRLVMVRGKIQK 611 (629)
Q Consensus 579 ~-~~~ek~l~ei~~~i-l~~~s~~~L~~ir~kly~ 611 (629)
. ...++++.++.... ...-+++.|.+++++.|.
T Consensus 504 tl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f~ 538 (617)
T PRK14086 504 DLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFG 538 (617)
T ss_pred CHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHhC
Confidence 2 23344444433211 113478889988888876
No 116
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.66 E-value=6.7e-15 Score=148.45 Aligned_cols=193 Identities=18% Similarity=0.263 Sum_probs=129.6
Q ss_pred CCCCccc-c--cHHHHHHHHHHHHcCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742 355 SSLNGFI-C--HRHEAQLLKELVVDGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429 (629)
Q Consensus 355 ~tfddIi-G--~e~~~~~Lk~~L~~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle 429 (629)
-+|+.++ | ++.+......+..... ...++||||+|+|||+|++++++++.... ....+++
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~---------------~~~~v~y 69 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH---------------PGKRVVY 69 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC---------------TTS-EEE
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc---------------cccccee
Confidence 3788886 4 5667777777665432 34689999999999999999999874211 0123778
Q ss_pred Eecccchh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH--HHHHHHHHHhcc-CCCcEEEEEecCCc---
Q 036742 430 LNVNLQAN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH--IQYLIKWIMDGY-TDSCKLILCCEDDV--- 501 (629)
Q Consensus 430 Inas~~~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~--~q~aLlrilEe~-~~~~~~ILitN~~~--- 501 (629)
+++..... ...+....+.++...+.. ..+|+||+++.+... .+..|..+++.. ..+..+|++++...
T Consensus 70 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~-----~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 70 LSAEEFIREFADALRDGEIEEFKDRLRS-----ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp EEHHHHHHHHHHHHHTTSHHHHHHHHCT-----SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ecHHHHHHHHHHHHHcccchhhhhhhhc-----CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 77742211 000000111222222222 249999999999543 477777777643 35568899986643
Q ss_pred -cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742 502 -DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKA 567 (629)
Q Consensus 502 -~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~ 567 (629)
.+.+.|+||+ .++.+.+|+.+..+.+|++.+...++.++++++.+|++...+|+|.+..+|..+.+
T Consensus 145 ~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 145 SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDA 214 (219)
T ss_dssp TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 2678999997 58999999999999999999999999999999999999999999999999887654
No 117
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.65 E-value=7.2e-15 Score=150.70 Aligned_cols=171 Identities=12% Similarity=0.087 Sum_probs=131.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc---ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP---VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~---i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~ 457 (629)
.+||+||.|+||..+|.++|+.+.|... ...|..|.+|. ......+..+.+... . +-.+.++++.+.+....
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~-~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~-~---I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKA-NGFCKTCESCLKILNGKYNDFYLIFDQKN-P---IKKEDALSIINKLNRPS 83 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHhcCCCCCEEEecCCcc-c---CCHHHHHHHHHHHccCc
Confidence 4789999999999999999999988752 22234444443 334555665544321 1 22467778777776655
Q ss_pred -C-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCC----------CHHHHH
Q 036742 458 -E-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP----------VTHEIM 525 (629)
Q Consensus 458 -~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~pp----------t~eei~ 525 (629)
. +..+|+|||++|.|+..+.|+|++++|+++.++.|||+|+.++.++++|+|||+.+.|+++ .+.++.
T Consensus 84 ~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~ 163 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQ 163 (261)
T ss_pred hhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHH
Confidence 2 4578999999999999999999999999999999999999999999999999999999888 455555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742 526 EVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565 (629)
Q Consensus 526 ~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~ 565 (629)
+.|.. +.+ +++ .++..++|++.+++.+++.+
T Consensus 164 ~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 164 YILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred HHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence 54432 222 333 67788999999999999865
No 118
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.7e-15 Score=171.35 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=144.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHH----------cC-C-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVV----------DG-N-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP 420 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~----------~g-~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~ 420 (629)
.+.+|.|+.|.+++++.|.+++. .| . ..++||+||||||||.||+|+|.+..-+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------------- 371 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------------- 371 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--------------
Confidence 45789999999999999999885 22 2 3489999999999999999999996322
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH---------------HHHHHHHHHHh
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE---------------HIQYLIKWIMD 485 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~---------------~~q~aLlrilE 485 (629)
++.+++++.... ...-.--.+...|.......++||||||||.+.. ...|.|+--|+
T Consensus 372 ------F~svSGSEFvE~--~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 372 ------FFSVSGSEFVEM--FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred ------eeeechHHHHHH--hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 233333211000 0000011223445555666778999999998822 23455666666
Q ss_pred ccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHH-
Q 036742 486 GYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAI- 559 (629)
Q Consensus 486 e~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AI- 559 (629)
.+. ..+.|+.+||.++-++++|++ |+ ..|.+..|+.....+|++.++.+-.+..++..+..|+..+.|....-|
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA 523 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH
Confidence 543 445677789999999999998 44 478899999999999999888876666566667779998877544332
Q ss_pred HHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 036742 560 MALEACKALNYPFADDQPIPLGWEEVLIELAAEI 593 (629)
Q Consensus 560 nlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~i 593 (629)
|++..+++.+...........+++.++..+...+
T Consensus 524 n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 524 NLCNEAALLAARKGLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred hhhhHHHHHHHHhccCccchhhHHHHHHHHhccc
Confidence 3333333333322233333356666666544443
No 119
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.65 E-value=5e-16 Score=181.53 Aligned_cols=199 Identities=19% Similarity=0.266 Sum_probs=158.7
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcC------------C--CCe--EEEEcCCCCcHHHHHHHHHHHHhCCCCC
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDG------------N--CPH--ILIKGQSGSGKRALAMALLHEIYGDACW 409 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g------------~--~p~--ILL~GPPGtGKTtLAraLAkeL~g~~~~ 409 (629)
+.|.++|+|....+++|+......+.+|+..- . ... ++++||||+|||+.|+++|+++ |..
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~-g~~-- 384 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL-GFK-- 384 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-ccc--
Confidence 68999999999999999999888888888632 0 112 6899999999999999999996 664
Q ss_pred CCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC-----------CCeEEEEEccchhhH---H
Q 036742 410 NEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV-----------SNAMIVIYEVDKAAE---H 475 (629)
Q Consensus 410 ~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~-----------~~kVIIIDEID~Ls~---~ 475 (629)
++|+|+++.++.. .+.+.+.++.....+.... ...|||+||+|.|.. +
T Consensus 385 -----------------v~E~Nas~~RSk~-~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg 446 (871)
T KOG1968|consen 385 -----------------VVEKNASDVRSKK-ELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRG 446 (871)
T ss_pred -----------------eeecCcccccccc-HHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhh
Confidence 7999999888643 3334444433222222111 122999999999976 4
Q ss_pred HHHHHHHHHhccCCCcEEEEEecCCccc-hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Q 036742 476 IQYLIKWIMDGYTDSCKLILCCEDDVDI-IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN 554 (629)
Q Consensus 476 ~q~aLlrilEe~~~~~~~ILitN~~~~I-~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD 554 (629)
....|-.++. ....++|++||+...- ..++.+-|..++|..|....+..+|..+|..+++.|+++.++.++..++||
T Consensus 447 ~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~D 524 (871)
T KOG1968|consen 447 GVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGD 524 (871)
T ss_pred hHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccC
Confidence 4455555555 4678899999998874 567777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 036742 555 LRKAIMALEACKA 567 (629)
Q Consensus 555 iR~AInlLq~~~~ 567 (629)
+|.+|+.|+++..
T Consensus 525 iR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 525 IRQIIMQLQFWSL 537 (871)
T ss_pred HHHHHHHHhhhhc
Confidence 9999999999844
No 120
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.65 E-value=3.6e-15 Score=160.98 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=117.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...+++||+|.+..++.|++++.. | ...++||+||||||||++|+++|+++...
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~------------- 183 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT------------- 183 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC-------------
Confidence 345669999999999999988741 1 13479999999999999999999986322
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhc--
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDG-- 486 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe-- 486 (629)
++.+....... ..+.+..+.+...+.......+.||||||+|.+. ...+..+..++..
T Consensus 184 -------~~~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 184 -------FIRVVGSELVR--KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred -------EEecchHHHHH--HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 23332211100 0011111111122222222345699999999983 2334455555432
Q ss_pred -c--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Q 036742 487 -Y--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN 554 (629)
Q Consensus 487 -~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD 554 (629)
+ ...+.||++||.++.+++++++ |+ ..+.|+.|+.++..+++...+.+..+. .+..+..|++.+.|-
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~ 327 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGA 327 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCC
Confidence 2 3567899999999999999986 55 478999999999999998877554332 112467788777653
No 121
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-14 Score=155.44 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=147.5
Q ss_pred hccCCCCCCcccccHHHHHHHHHHH----HcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELV----VDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L----~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
.-|-| +.+.+.+..+..+...+ ..+...++++|||||||||++++.+++++..... ..
T Consensus 12 ~~~iP---~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~---------------~~ 73 (366)
T COG1474 12 EDYIP---EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA---------------NV 73 (366)
T ss_pred CCCCc---ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc---------------cC
Confidence 34555 44777777766665555 4555557999999999999999999999854421 11
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHH-------------hc--cCcCCCCeEEEEEccchhhHHHHHHHHH---HHhcc
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDN-------------LA--ITPEVSNAMIVIYEVDKAAEHIQYLIKW---IMDGY 487 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~-------------~~--~~~~~~~kVIIIDEID~Ls~~~q~aLlr---ilEe~ 487 (629)
.+++|||....+..+++..+++.+.+. +. .......-||+|||+|.|.......|+. ..+..
T Consensus 74 ~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~ 153 (366)
T COG1474 74 EVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN 153 (366)
T ss_pred ceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc
Confidence 278999976666555555555543200 00 0001122399999999996553344444 44444
Q ss_pred CCCcEEEEEecCCc---cchHHHhhcce--EeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHH---HHccCCHHH
Q 036742 488 TDSCKLILCCEDDV---DIIESVKTHCK--VIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIA---TKAKQNLRK 557 (629)
Q Consensus 488 ~~~~~~ILitN~~~---~I~~aLrSR~~--~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia---~~s~GDiR~ 557 (629)
...+.+|+++|+.. .+++.+++++. .|.|+||+.+|+..||...+.. ..-.+++++++.++ ...+||.|.
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~ 233 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARK 233 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHH
Confidence 34456777888764 37888999874 5889999999999999988763 22356777877766 446789999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCchhHHHHH
Q 036742 558 AIMALEACKALNYPFADDQPIPLGWEEVL 586 (629)
Q Consensus 558 AInlLq~~~~~~~~~~~~~~~~~~~ek~l 586 (629)
||.+|..+...+..-...+.....+.++.
T Consensus 234 aidilr~A~eiAe~~~~~~v~~~~v~~a~ 262 (366)
T COG1474 234 AIDILRRAGEIAEREGSRKVSEDHVREAQ 262 (366)
T ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 99999998777765444554555555443
No 122
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.7e-15 Score=165.66 Aligned_cols=184 Identities=20% Similarity=0.198 Sum_probs=122.0
Q ss_pred hhhccCCCCCCcccccHHHHHHHHHHHH----------cCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCc
Q 036742 348 WADKHQPSSLNGFICHRHEAQLLKELVV----------DGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPT 415 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~----------~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~ 415 (629)
.+-|..-++|+||.|.++++..|.+-++ .|- -.+||||||||||||.+|+|+|.++.-..+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~Fl------- 734 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFL------- 734 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEE-------
Confidence 3445566789999999999999998885 222 237999999999999999999999742211
Q ss_pred cccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-------------HHHHHHHH
Q 036742 416 QVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-------------HIQYLIKW 482 (629)
Q Consensus 416 ~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-------------~~q~aLlr 482 (629)
.+..... +|.+.+ +.-.++++.|..+...++||||+||+|.+.+ .....|+.
T Consensus 735 -----SVKGPEL--LNMYVG--------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA 799 (953)
T KOG0736|consen 735 -----SVKGPEL--LNMYVG--------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA 799 (953)
T ss_pred -----eecCHHH--HHHHhc--------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH
Confidence 0001000 111111 2223444556666677789999999999933 34555666
Q ss_pred HHhccC----CCcEEEEEecCCccchHHHhh--cce-EeeccCCCHHHHH-HHHHHHHHhcCCCCCHHH-HHHHHHHccC
Q 036742 483 IMDGYT----DSCKLILCCEDDVDIIESVKT--HCK-VIKVDPPVTHEIM-EVLIQIARKEDFDLSMTF-AAKIATKAKQ 553 (629)
Q Consensus 483 ilEe~~----~~~~~ILitN~~~~I~~aLrS--R~~-~I~F~ppt~eei~-~iL~~i~~kegl~is~e~-L~~Ia~~s~G 553 (629)
-|+... ..+-||.+||+++.|+++|.+ ||- .+++.+..+++-. .+|+.+.++ +.+++++ +..||+.|.-
T Consensus 800 ELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 800 ELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred HhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCc
Confidence 666544 334466689999999999998 554 4666777666655 445444444 5555554 8888888765
Q ss_pred CH
Q 036742 554 NL 555 (629)
Q Consensus 554 Di 555 (629)
++
T Consensus 878 ~~ 879 (953)
T KOG0736|consen 878 NM 879 (953)
T ss_pred CC
Confidence 44
No 123
>PRK09087 hypothetical protein; Validated
Probab=99.63 E-value=8.5e-15 Score=148.40 Aligned_cols=171 Identities=12% Similarity=0.177 Sum_probs=125.7
Q ss_pred CCCcccc---cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 356 SLNGFIC---HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 356 tfddIiG---~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
+|++++. +..++..+.+|.. ...+.++|+||+|||||||+++++... +. .+++.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~-~~---------------------~~i~~ 75 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKS-DA---------------------LLIHP 75 (226)
T ss_pred ChhceeecCchHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhc-CC---------------------EEecH
Confidence 7899884 5667777777653 224569999999999999999998763 21 23333
Q ss_pred ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc-cCCCcEEEEEecCCcc----chHHH
Q 036742 433 NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG-YTDSCKLILCCEDDVD----IIESV 507 (629)
Q Consensus 433 s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe-~~~~~~~ILitN~~~~----I~~aL 507 (629)
.. .+ .+.+.... ..+|+|||+|.+.. .+..|..+++. +..+..+|++++.... ..+.|
T Consensus 76 ~~-~~-----~~~~~~~~----------~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL 138 (226)
T PRK09087 76 NE-IG-----SDAANAAA----------EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDL 138 (226)
T ss_pred HH-cc-----hHHHHhhh----------cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccH
Confidence 21 00 01111111 13799999998742 34455556543 2346778888876433 47899
Q ss_pred hhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 508 KTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 508 rSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
+||+ .++.+.+|+.+++.++|++.+...++.++++++++|++.+.|++|.++.+|..+.
T Consensus 139 ~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 139 KSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred HHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999 8999999999999999999999999999999999999999999999998776553
No 124
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.61 E-value=4.1e-14 Score=153.40 Aligned_cols=233 Identities=15% Similarity=0.173 Sum_probs=160.8
Q ss_pred CCCcccc---cHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 356 SLNGFIC---HRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 356 tfddIiG---~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
+|++++. +.-+......|.... ..+.++||||.|+|||+|++|++.+...... ...++++
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~---------------~a~v~y~ 149 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP---------------NARVVYL 149 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCC---------------CceEEec
Confidence 6777763 455666677776643 3668999999999999999999998753321 2236666
Q ss_pred ecccchh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhccC-CCcEEEEEecCCcc---
Q 036742 431 NVNLQAN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDGYT-DSCKLILCCEDDVD--- 502 (629)
Q Consensus 431 nas~~~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe~~-~~~~~ILitN~~~~--- 502 (629)
.+..... +..+..+.+.++.+.| ...+++||||+.+.. ..++.|..+++... .+..+|+++..+..
T Consensus 150 ~se~f~~~~v~a~~~~~~~~Fk~~y------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 150 TSEDFTNDFVKALRDNEMEKFKEKY------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHhh------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6543221 1111112222333333 224899999999954 34555555554322 34478888877554
Q ss_pred -chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 503 -IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 503 -I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
+.+.|+||+ ..+.+.+|+.+.+..+|+..+...++.++++++.+|+.....|+|.+..+|..+....... ....+
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~-~~~iT 302 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFT-KRAIT 302 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-CccCc
Confidence 578999997 6899999999999999999999999999999999999999999999998887655433211 11222
Q ss_pred chhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 036742 579 PLGWEEVLIELAAEILADPSPKRLVMVRGKIQK 611 (629)
Q Consensus 579 ~~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~ 611 (629)
...+.+++.++....-. -+++.|.+++++.|.
T Consensus 303 i~~v~e~L~~~~~~~~~-itie~I~~~Va~~y~ 334 (408)
T COG0593 303 IDLVKEILKDLLRAGEK-ITIEDIQKIVAEYYN 334 (408)
T ss_pred HHHHHHHHHHhhccccc-CCHHHHHHHHHHHhC
Confidence 24445666665554334 788999999988775
No 125
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.61 E-value=6.3e-15 Score=164.51 Aligned_cols=178 Identities=11% Similarity=0.116 Sum_probs=116.2
Q ss_pred hhccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCc
Q 036742 349 ADKHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPT 415 (629)
Q Consensus 349 ~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~ 415 (629)
.+.+.+.+|+||+|.+..++.|++.+.. | ..+++|||||||||||++|+++|+++..... .
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~-~----- 246 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIG-A----- 246 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccc-c-----
Confidence 3778889999999999999999888741 1 2347999999999999999999999732211 0
Q ss_pred cccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhcc-CcCCCCeEEEEEccchhhH------------HHHH
Q 036742 416 QVLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAI-TPEVSNAMIVIYEVDKAAE------------HIQY 478 (629)
Q Consensus 416 ~v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~-~~~~~~kVIIIDEID~Ls~------------~~q~ 478 (629)
.......++.+.... ..+. ....++.+...... .....+.||||||+|.+.. ...+
T Consensus 247 ----~~~~~~~fl~v~~~eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~ 319 (512)
T TIGR03689 247 ----ETGDKSYFLNIKGPELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVP 319 (512)
T ss_pred ----ccCCceeEEeccchhhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHH
Confidence 000011122222111 1111 11122222211111 1223457999999999832 1234
Q ss_pred HHHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCC
Q 036742 479 LIKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLS 540 (629)
Q Consensus 479 aLlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is 540 (629)
.|+..|+... .++.+|++||.++.|+++|++ |+ ..|+|++|+.++..++++.++.. .+.++
T Consensus 320 ~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~ 385 (512)
T TIGR03689 320 QLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD 385 (512)
T ss_pred HHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence 5666666443 567788899999999999998 77 46999999999999999988754 35553
No 126
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=3.8e-14 Score=149.20 Aligned_cols=179 Identities=10% Similarity=0.157 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHcCCCCeEE-EEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc-ceEEEecccchhhHHHH
Q 036742 365 HEAQLLKELVVDGNCPHIL-IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA-HHVELNVNLQANAKYAL 442 (629)
Q Consensus 365 ~~~~~Lk~~L~~g~~p~IL-L~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~-~vleInas~~~~~k~~l 442 (629)
.+++.|++.++.|...|++ |+|+.|+||+++|+.+++.+.|..... +...... .+..++.. +.. +-
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--------~~~~~~p~n~~~~d~~-g~~---i~ 70 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN--------LNEQELPANIILFDIF-DKD---LS 70 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--------CCCCCCCcceEEeccC-CCc---CC
Confidence 4678899999999988865 999999999999999999987743100 0000011 12333211 111 12
Q ss_pred HHHHHHHHHHhccCc-C-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCC
Q 036742 443 MGLVKEIRDNLAITP-E-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPV 520 (629)
Q Consensus 443 ~~~lrei~~~~~~~~-~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt 520 (629)
.+.++++.+.+...+ . +..+|+|||++|.|+..++++|++++|+++..+.|||+|+.+..+.++|+|||+++.|.+++
T Consensus 71 vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~ 150 (299)
T PRK07132 71 KSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150 (299)
T ss_pred HHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC
Confidence 356777777776665 2 46789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 521 ~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
.+++..+|... + ++++....++..++ ++.+|+.++
T Consensus 151 ~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~ 185 (299)
T PRK07132 151 QQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYI 185 (299)
T ss_pred HHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHH
Confidence 99999888642 3 56666666666666 488877765
No 127
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.9e-14 Score=161.23 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=129.1
Q ss_pred CCCCCCcccccHHHHHHHHHHHH-------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVV-------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~-------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...+++|+.|.+.+++.+++.+. .....++|||||||||||++|+++|.++ +..
T Consensus 237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-~~~------------ 303 (494)
T COG0464 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-RSR------------ 303 (494)
T ss_pred CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-CCe------------
Confidence 34677999999999988888774 1223389999999999999999999986 332
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh--c
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD--G 486 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE--e 486 (629)
++.+..++.. ...+.+.-+.+...|........+||||||+|.+. ..+.+.|+..++ +
T Consensus 304 -------fi~v~~~~l~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e 374 (494)
T COG0464 304 -------FISVKGSELL--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE 374 (494)
T ss_pred -------EEEeeCHHHh--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC
Confidence 3444443111 11222333444444544555667899999999992 246667777775 3
Q ss_pred cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccC
Q 036742 487 YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFD-LSMTFAAKIATKAKQ 553 (629)
Q Consensus 487 ~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~-is~e~L~~Ia~~s~G 553 (629)
....+.+|.+||.++.+++++.+ |+ .++.|++|+.++..++++..+...+.. ..+-.+..+++.+.|
T Consensus 375 ~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 375 KAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred ccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 33556688899999999999999 88 478999999999999999888765554 345567788887665
No 128
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.60 E-value=1.1e-14 Score=170.39 Aligned_cols=174 Identities=20% Similarity=0.167 Sum_probs=121.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...+|+||+|.+.+++.|++++.- | ...++|||||||||||++|+++|+++. ..
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-~~------------ 514 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-AN------------ 514 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-CC------------
Confidence 345789999999999999988741 1 223799999999999999999999963 32
Q ss_pred cccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH------------HHHHHHHHH
Q 036742 420 PVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE------------HIQYLIKWI 483 (629)
Q Consensus 420 ~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~------------~~q~aLlri 483 (629)
++.+.+++ +.+.. ...++.+ |.......++||||||||.+.. ...+.|+..
T Consensus 515 -------fi~v~~~~l~~~~vGes---e~~i~~~---f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ 581 (733)
T TIGR01243 515 -------FIAVRGPEILSKWVGES---EKAIREI---FRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTE 581 (733)
T ss_pred -------EEEEehHHHhhcccCcH---HHHHHHH---HHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHH
Confidence 34554421 11111 1222322 2222334567999999999832 344556666
Q ss_pred Hhc--cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHccCC
Q 036742 484 MDG--YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSM-TFAAKIATKAKQN 554 (629)
Q Consensus 484 lEe--~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~-e~L~~Ia~~s~GD 554 (629)
|+. ...++.||++||.++.|++++++ || ..+.|+.|+.++..++++....+ +.+.+ ..+..|++.+.|-
T Consensus 582 ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~ 656 (733)
T TIGR01243 582 MDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGY 656 (733)
T ss_pred hhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCC
Confidence 663 23567788899999999999996 88 57889999999999999866554 44433 3478888887653
No 129
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.7e-14 Score=156.40 Aligned_cols=189 Identities=16% Similarity=0.153 Sum_probs=130.5
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
+.-++..++||.|.+.+++.|.+++. +....++||.||||+|||.|++|||.|. +..
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~-~at---------- 213 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES-GAT---------- 213 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-cce----------
Confidence 33445555999999999999988884 2334579999999999999999999996 433
Q ss_pred cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH----HHHHHHHHHHh--------
Q 036742 418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE----HIQYLIKWIMD-------- 485 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~----~~q~aLlrilE-------- 485 (629)
++.|.++...+. .+.+.-+.+...|.++...++.||||||||.+.. ..++.-+++..
T Consensus 214 ---------ff~iSassLtsK--~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~ 282 (428)
T KOG0740|consen 214 ---------FFNISASSLTSK--YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDG 282 (428)
T ss_pred ---------EeeccHHHhhhh--ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcc
Confidence 345555321110 1111123333445555566677999999999932 22222222221
Q ss_pred ---ccCCCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CHHH
Q 036742 486 ---GYTDSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NLRK 557 (629)
Q Consensus 486 ---e~~~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----DiR~ 557 (629)
...+.+.+|.+||.++.+++++++|+. ++.++.|+.+....++.+.+.+.+..+.+..+..|++.+.| ||..
T Consensus 283 ~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~ 362 (428)
T KOG0740|consen 283 KNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITA 362 (428)
T ss_pred ccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHH
Confidence 122456778899999999999999996 45577788888888899888888788888899999988654 5544
Q ss_pred HHH
Q 036742 558 AIM 560 (629)
Q Consensus 558 AIn 560 (629)
++.
T Consensus 363 l~k 365 (428)
T KOG0740|consen 363 LCK 365 (428)
T ss_pred HHH
Confidence 433
No 130
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.2e-14 Score=144.23 Aligned_cols=184 Identities=18% Similarity=0.202 Sum_probs=132.0
Q ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC
Q 036742 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW 413 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~ 413 (629)
+.++|....+.+-+.|.+..++.+++.+.- | ...++|||||||+|||.+|+++|....|.
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~------- 208 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT------- 208 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE-------
Confidence 356777777788888999999999998851 1 23479999999999999999999886444
Q ss_pred CccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHH
Q 036742 414 PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKW 482 (629)
Q Consensus 414 ~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlr 482 (629)
++.+..+. -....+.+--+.+++.|..+....+.|||+||||.+. .+.|..++.
T Consensus 209 -------------firvsgse--lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmle 273 (404)
T KOG0728|consen 209 -------------FIRVSGSE--LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE 273 (404)
T ss_pred -------------EEEechHH--HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH
Confidence 33333321 1112223334445556666666777899999999992 356666665
Q ss_pred HHhc-----cCCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC
Q 036742 483 IMDG-----YTDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQ 553 (629)
Q Consensus 483 ilEe-----~~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~G 553 (629)
+++. ...++.+|++||+.+-++++|.+-. ..|+|++|+.+...++|+-...+.++. .. .+..|++...|
T Consensus 274 llnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~--rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 274 LLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT--RGINLRKIAEKMPG 351 (404)
T ss_pred HHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh--cccCHHHHHHhCCC
Confidence 5542 3477899999999999999998754 479999999999999998777665442 22 26677777655
Q ss_pred C
Q 036742 554 N 554 (629)
Q Consensus 554 D 554 (629)
.
T Consensus 352 a 352 (404)
T KOG0728|consen 352 A 352 (404)
T ss_pred C
Confidence 3
No 131
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.57 E-value=1e-13 Score=147.26 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=79.8
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC------------CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED------------DVDIIESVKTHCKVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL~ 529 (629)
.||||||++.|.-++..+|.+.+|.. -...+||+||+ ++-|+..|..||.+|.-.||+.++++++|.
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~ 358 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILK 358 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHH
T ss_pred ceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHH
Confidence 39999999999999999999999842 22346778884 334778999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 036742 530 QIARKEDFDLSMTFAAKIATKA-KQNLRKAIMALEACK 566 (629)
Q Consensus 530 ~i~~kegl~is~e~L~~Ia~~s-~GDiR~AInlLq~~~ 566 (629)
..|+.|++.+++++++.|.... ...+|.|+++|..+.
T Consensus 359 iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 359 IRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred hhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 9999999999999999998764 578999999998764
No 132
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=2e-14 Score=169.19 Aligned_cols=174 Identities=13% Similarity=0.180 Sum_probs=116.8
Q ss_pred CcccccHHHHHHHHHHHH----cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 358 NGFICHRHEAQLLKELVV----DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~----~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
++++|++++++.+.+++. .+ ..+++||+||||||||++|++||+.+... + +.++
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~-~-------------------~~i~ 379 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK-F-------------------VRFS 379 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-e-------------------EEEe
Confidence 358899999999998774 12 34579999999999999999999997432 2 2222
Q ss_pred cccchhhHH-------HHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH----HHHHHHHHHhc-----c--------
Q 036742 432 VNLQANAKY-------ALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH----IQYLIKWIMDG-----Y-------- 487 (629)
Q Consensus 432 as~~~~~k~-------~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~----~q~aLlrilEe-----~-------- 487 (629)
......... .+......+.+.+... ...+.||||||||.+..+ ..++|+.+++. +
T Consensus 380 ~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~ 458 (775)
T TIGR00763 380 LGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVP 458 (775)
T ss_pred CCCcccHHHHcCCCCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCce
Confidence 110000000 0000000111111111 112349999999999653 34778887763 1
Q ss_pred --CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHH-----Hh-----cCCCCCHHHHHHHHHHcc
Q 036742 488 --TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA-----RK-----EDFDLSMTFAAKIATKAK 552 (629)
Q Consensus 488 --~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~-----~k-----egl~is~e~L~~Ia~~s~ 552 (629)
..++.||+|||..+.|+++|++||.+|.|++|+.++...++++.+ .. +++.++++++..|++...
T Consensus 459 ~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 459 FDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred eccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 145678999999999999999999999999999999988887654 22 245789999999988543
No 133
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.57 E-value=2.3e-13 Score=142.83 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=92.0
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC------------CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED------------DVDIIESVKTHCKVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL~ 529 (629)
.||||||++.|.-+++.+|.+.||.. -...+||++|. |+-|+..|..|+.+|.-.||+.+++++||.
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse-~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~ 371 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE-LAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIR 371 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcc-cCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHH
Confidence 39999999999999999999999842 12346677775 455889999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhcC
Q 036742 530 QIARKEDFDLSMTFAAKIATKA-KQNLRKAIMALEACKALN 569 (629)
Q Consensus 530 ~i~~kegl~is~e~L~~Ia~~s-~GDiR~AInlLq~~~~~~ 569 (629)
..|..+++.++++++++|+... ...+|.|+++|.-+...+
T Consensus 372 iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA 412 (450)
T COG1224 372 IRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIA 412 (450)
T ss_pred HhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHH
Confidence 9999999999999999999874 578999999998554433
No 134
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=8.8e-14 Score=165.22 Aligned_cols=208 Identities=13% Similarity=0.158 Sum_probs=148.9
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
..++++.+|..++.++|+++.+..+.+.|..+..++++|+||||||||++|+++|..+.....+ ......
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p----------~~l~~~ 230 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVP----------ESLKNK 230 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCc----------hhhcCC
Confidence 3477899999999999999999999999988888899999999999999999999987432210 011122
Q ss_pred ceEEEecccc-hh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEE
Q 036742 426 HHVELNVNLQ-AN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLI 494 (629)
Q Consensus 426 ~vleInas~~-~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~I 494 (629)
.++.++.... .+ ........++.+...... ...+.||||||+|.+.. ++.+.|+..++ .....+|
T Consensus 231 ~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~I 306 (852)
T TIGR03346 231 RLLALDMGALIAGAKYRGEFEERLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCI 306 (852)
T ss_pred eEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEE
Confidence 3445443210 01 111223344444443321 12356999999999952 35566666654 3557788
Q ss_pred EEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC------HHHHH
Q 036742 495 LCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQN------LRKAI 559 (629)
Q Consensus 495 LitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GD------iR~AI 559 (629)
.+|+..+ .+++++.+||..|.+..|+.++...+|..+..+ .++.+.++++..++.++.+. +.+||
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAi 386 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAI 386 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHH
Confidence 8887653 368999999999999999999999998876543 45678899999999888754 56899
Q ss_pred HHHHHHHh
Q 036742 560 MALEACKA 567 (629)
Q Consensus 560 nlLq~~~~ 567 (629)
.+|+.+++
T Consensus 387 dlld~a~a 394 (852)
T TIGR03346 387 DLIDEAAA 394 (852)
T ss_pred HHHHHHHH
Confidence 99987654
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.56 E-value=4.1e-13 Score=138.89 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742 364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM 443 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~ 443 (629)
..+++.+..++..|. ++||.||||||||++|+++|..+ +.. ++.+++........++.
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l-g~~-------------------~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR-DRP-------------------VMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh-CCC-------------------EEEEeCCccCCHHHHhh
Confidence 445566677777654 79999999999999999999976 443 34444422111111110
Q ss_pred H--------HHHHHHH----H-------hcc----CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------------
Q 036742 444 G--------LVKEIRD----N-------LAI----TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------ 488 (629)
Q Consensus 444 ~--------~lrei~~----~-------~~~----~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------ 488 (629)
. .+..... . +.. .....+.+|+|||++.+.++.++.|+.++++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 66 SYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred hhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCce
Confidence 0 0111100 0 000 000123599999999999999999999997531
Q ss_pred ----CCcEEEEEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc-------
Q 036742 489 ----DSCKLILCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK------- 552 (629)
Q Consensus 489 ----~~~~~ILitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~------- 552 (629)
...++|+|+|... .+.++|.+||..+.+..|+.++..++|...+ .++++.++.|++...
T Consensus 146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~ 220 (262)
T TIGR02640 146 VDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGD 220 (262)
T ss_pred EecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCC
Confidence 2567899999752 3689999999999999999999999988653 456777777665431
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742 553 ---QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 553 ---GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
-.+|.+|.++..++..+. .....+.++.+++.++.
T Consensus 221 ~~~~~~r~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 221 EITSGLRASLMIAEVATQQDI---PVDVDDEDFVDLCIDIL 258 (262)
T ss_pred ccCCcHHHHHHHHHHHHHcCC---CCCCCcHHHHHHHHHHh
Confidence 137888888888776643 22234455555554443
No 136
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.1e-14 Score=144.15 Aligned_cols=189 Identities=12% Similarity=0.160 Sum_probs=129.6
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
+.-...+..|+.|.++.++.|++.+.. | ...++|+|||||||||.+|+++|+.. .. +
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-da-c-------- 238 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-DA-C-------- 238 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-Cc-e--------
Confidence 333456789999999999999998862 2 23489999999999999999999874 22 1
Q ss_pred ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh
Q 036742 417 VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD 485 (629)
Q Consensus 417 v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE 485 (629)
++.+-.+. -..+.+.+-.+.+++.|.......-+|||+||||.+. .++|..++.++.
T Consensus 239 ----------firvigse--lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~ 306 (435)
T KOG0729|consen 239 ----------FIRVIGSE--LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN 306 (435)
T ss_pred ----------EEeehhHH--HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHH
Confidence 22222221 1112233344555556666665566799999999982 356666666665
Q ss_pred c-----cCCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHcc----
Q 036742 486 G-----YTDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAK---- 552 (629)
Q Consensus 486 e-----~~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~---- 552 (629)
. +..++.++++||+++.++++|.+-. ..++|.-|+.+-...|++-++.. +.+..++ .+.|+++|.
T Consensus 307 qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstg 384 (435)
T KOG0729|consen 307 QLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTG 384 (435)
T ss_pred hccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcc
Confidence 3 3477889999999999999999754 47999999888777777655544 3334443 556777764
Q ss_pred CCHHHHHHHH
Q 036742 553 QNLRKAIMAL 562 (629)
Q Consensus 553 GDiR~AInlL 562 (629)
.++|....-.
T Consensus 385 aeirsvctea 394 (435)
T KOG0729|consen 385 AEIRSVCTEA 394 (435)
T ss_pred hHHHHHHHHh
Confidence 4666655443
No 137
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=2.1e-13 Score=161.71 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=148.1
Q ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc
Q 036742 347 FWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH 426 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~ 426 (629)
..+++.+|..+++++|+++.++.+.+.|.....+++||+||||||||++|+++|..+....++ .......
T Consensus 167 ~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp----------~~l~~~~ 236 (857)
T PRK10865 167 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP----------EGLKGRR 236 (857)
T ss_pred hHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCc----------hhhCCCE
Confidence 466889999999999999999999999988888899999999999999999999987432210 0111223
Q ss_pred eEEEeccc-chh--hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEEE
Q 036742 427 HVELNVNL-QAN--AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLIL 495 (629)
Q Consensus 427 vleInas~-~~~--~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~IL 495 (629)
++.++... ..+ ....+.+.++.+...... ...+.||||||+|.+.. ++++.|...++ .....+|.
T Consensus 237 ~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~--~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~Ig 312 (857)
T PRK10865 237 VLALDMGALVAGAKYRGEFEERLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVG 312 (857)
T ss_pred EEEEehhhhhhccchhhhhHHHHHHHHHHHHH--cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEE
Confidence 44544321 111 111233444544443221 12456999999999953 35777777775 35677888
Q ss_pred EecCCcc-----chHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCH------HHHHH
Q 036742 496 CCEDDVD-----IIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQNL------RKAIM 560 (629)
Q Consensus 496 itN~~~~-----I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GDi------R~AIn 560 (629)
+|+..+. +++++.+||..|.+..|+.++...+|+.+..+ .++.++++++...+..+++.+ .+|+.
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~ 392 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID 392 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHH
Confidence 8877653 78999999999999999999999988776543 356788999888877776543 57888
Q ss_pred HHHHHHh
Q 036742 561 ALEACKA 567 (629)
Q Consensus 561 lLq~~~~ 567 (629)
++..++.
T Consensus 393 LiD~aaa 399 (857)
T PRK10865 393 LIDEAAS 399 (857)
T ss_pred HHHHHhc
Confidence 8887654
No 138
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.54 E-value=1.3e-13 Score=146.97 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=104.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc----cchhhHHHHHHHHHHHHHHhccC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN----LQANAKYALMGLVKEIRDNLAIT 456 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas----~~~~~k~~l~~~lrei~~~~~~~ 456 (629)
.++||||||||||.+|++||+++ +.. ++.+++. .+.|.. +..+++....+...
T Consensus 150 gllL~GPPGcGKTllAraiA~el-g~~-------------------~i~vsa~eL~sk~vGEs---Ek~IR~~F~~A~~~ 206 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKM-GIE-------------------PIVMSAGELESENAGEP---GKLIRQRYREAADI 206 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHc-CCC-------------------eEEEEHHHhhcCcCCcH---HHHHHHHHHHHHHH
Confidence 68899999999999999999997 433 3555552 122221 23344443332221
Q ss_pred --cCCCCeEEEEEccchhhH-----------HH-HHHHHHHHhc--------------cCCCcEEEEEecCCccchHHHh
Q 036742 457 --PEVSNAMIVIYEVDKAAE-----------HI-QYLIKWIMDG--------------YTDSCKLILCCEDDVDIIESVK 508 (629)
Q Consensus 457 --~~~~~kVIIIDEID~Ls~-----------~~-q~aLlrilEe--------------~~~~~~~ILitN~~~~I~~aLr 508 (629)
...+.+||||||||.+.. .. ...|+.+++. ....+.||.|||+++.|+++|+
T Consensus 207 a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl 286 (413)
T PLN00020 207 IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI 286 (413)
T ss_pred hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence 234678999999998832 11 1345555542 2355788999999999999999
Q ss_pred h--cceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Q 036742 509 T--HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN 554 (629)
Q Consensus 509 S--R~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD 554 (629)
+ |+-.+ |..|+.+++.+||+.++.+.+ ++...+..|+....|-
T Consensus 287 RpGRfDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 287 RDGRMEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred CCCCCCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 9 88664 347999999999999888765 4678888899888764
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.53 E-value=7.8e-14 Score=165.14 Aligned_cols=201 Identities=18% Similarity=0.221 Sum_probs=147.3
Q ss_pred hhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 349 ADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 349 ~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
+++-+...++.++|.++.++.+.++|.....+++||+||||||||++|+.+|..+....... ......++
T Consensus 170 ~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~----------~l~~~~i~ 239 (821)
T CHL00095 170 TKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPD----------ILEDKLVI 239 (821)
T ss_pred HHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh----------hhcCCeEE
Confidence 35556677899999999999999999988888999999999999999999999974322110 11223466
Q ss_pred EEeccc------chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEE
Q 036742 429 ELNVNL------QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLI 494 (629)
Q Consensus 429 eInas~------~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~I 494 (629)
+++... .+| ..++.++.+.+.... ..+.||||||+|.+.. .+.+.|...+. .....+|
T Consensus 240 ~l~~~~l~ag~~~~g---e~e~rl~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~I 311 (821)
T CHL00095 240 TLDIGLLLAGTKYRG---EFEERLKRIFDEIQE---NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCI 311 (821)
T ss_pred EeeHHHHhccCCCcc---HHHHHHHHHHHHHHh---cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEE
Confidence 666531 122 233445555543321 2346999999998843 35667776665 3567788
Q ss_pred EEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHccCC------HHHHH
Q 036742 495 LCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIA----RKEDFDLSMTFAAKIATKAKQN------LRKAI 559 (629)
Q Consensus 495 LitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~----~kegl~is~e~L~~Ia~~s~GD------iR~AI 559 (629)
.+|+... ..+++|.+||..+.+..|+.++...+|..+. ...++.++++++..++..+.+. +++||
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHH
Confidence 8887654 2578999999999999999999888887654 3456778999999999998764 56899
Q ss_pred HHHHHHHh
Q 036742 560 MALEACKA 567 (629)
Q Consensus 560 nlLq~~~~ 567 (629)
.+|+.+++
T Consensus 392 dlld~a~a 399 (821)
T CHL00095 392 DLLDEAGS 399 (821)
T ss_pred HHHHHHHH
Confidence 99997655
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=3.6e-13 Score=157.18 Aligned_cols=203 Identities=16% Similarity=0.197 Sum_probs=139.7
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle 429 (629)
++-+-..++.++|.+..+..+.+.|.....+++||+||||||||++|+++|..+....... ......++.
T Consensus 178 ~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~----------~l~~~~~~~ 247 (758)
T PRK11034 178 QLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE----------VMADCTIYS 247 (758)
T ss_pred HHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc----------hhcCCeEEe
Confidence 4445567789999999999999999887778999999999999999999998763222100 011112233
Q ss_pred Eeccc-chhh--HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh---------HHHHHHHHHHHhccCCCcEEEEEe
Q 036742 430 LNVNL-QANA--KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA---------EHIQYLIKWIMDGYTDSCKLILCC 497 (629)
Q Consensus 430 Inas~-~~~~--k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls---------~~~q~aLlrilEe~~~~~~~ILit 497 (629)
++... ..+. .......++.+...+.. ..+.||||||+|.+. .++.+.|..+++. ....+|.+|
T Consensus 248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~---~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgAT 322 (758)
T PRK11034 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGST 322 (758)
T ss_pred ccHHHHhcccchhhhHHHHHHHHHHHHHh---cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecC
Confidence 22210 0000 01122333333332221 234599999999982 2344556666653 567778888
Q ss_pred cCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHccCCH------HHHHHHH
Q 036742 498 EDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR----KEDFDLSMTFAAKIATKAKQNL------RKAIMAL 562 (629)
Q Consensus 498 N~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~----kegl~is~e~L~~Ia~~s~GDi------R~AInlL 562 (629)
+..+ .++++|.+||..|.+.+|+.++...+|+.+.. ..++.++++++..+++++...+ .+|+.+|
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidll 402 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHH
Confidence 7654 36899999999999999999999999987643 4578899999999998876544 4899999
Q ss_pred HHHHh
Q 036742 563 EACKA 567 (629)
Q Consensus 563 q~~~~ 567 (629)
+.+++
T Consensus 403 dea~a 407 (758)
T PRK11034 403 DEAGA 407 (758)
T ss_pred HHHHH
Confidence 87764
No 141
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.5e-13 Score=138.98 Aligned_cols=173 Identities=20% Similarity=0.214 Sum_probs=119.4
Q ss_pred CCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 356 SLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
+.+||.|.+..++.|.+++. -| ...++|+|||||||||.+|++.|.+.....
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF--------------- 233 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF--------------- 233 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH---------------
Confidence 45999999999988888873 12 234899999999999999999998753321
Q ss_pred CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh---ccC
Q 036742 423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD---GYT 488 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE---e~~ 488 (629)
+.+..- .-..-.+.+-.+-++..|++.....+.||||||+|.+. .++|..++.+++ .++
T Consensus 234 -----LKLAgP--QLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 234 -----LKLAGP--QLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred -----HHhcch--HHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 111110 00000111223445567777777778899999999992 356666665554 333
Q ss_pred --CCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHcc
Q 036742 489 --DSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAK 552 (629)
Q Consensus 489 --~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~ 552 (629)
..+.+|.+||+.+-++++|.+.. ..|+|+.|+.+....||+-...+.++ ++++ .+.|++.+.
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTd 374 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTD 374 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhccc
Confidence 45678999999999999998754 57999999998888888776666544 4443 666776553
No 142
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.51 E-value=3.8e-13 Score=155.27 Aligned_cols=192 Identities=17% Similarity=0.136 Sum_probs=128.1
Q ss_pred cCCCCCCcccccHHHHHHHHHHHHc-----------CC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 352 HQPSSLNGFICHRHEAQLLKELVVD-----------GN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 352 yrP~tfddIiG~e~~~~~Lk~~L~~-----------g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
....+|+|+.|.+.+++.|.+++.- +. .+++||+||||||||++|+++|+++. ..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-~~------------ 212 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-VP------------ 212 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-CC------------
Confidence 3345678999999888887776641 12 34799999999999999999999863 32
Q ss_pred cccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHHH
Q 036742 420 PVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIM 484 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlril 484 (629)
++.+++++..... ......++.+. .......++||||||+|.+.. ...+.|+..|
T Consensus 213 -------f~~is~~~~~~~~~g~~~~~~~~~f---~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~m 282 (644)
T PRK10733 213 -------FFTISGSDFVEMFVGVGASRVRDMF---EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 282 (644)
T ss_pred -------EEEEehHHhHHhhhcccHHHHHHHH---HHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhh
Confidence 3445443211100 00011222222 222233567999999999832 2344555556
Q ss_pred hccCC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CH
Q 036742 485 DGYTD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NL 555 (629)
Q Consensus 485 Ee~~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----Di 555 (629)
+.+.. .+.+|++||.++.|++++++ |+ ..+.|+.|+.++..++|+..+.+..+. .+..+..|++.+.| |+
T Consensus 283 dg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl 361 (644)
T PRK10733 283 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADL 361 (644)
T ss_pred hcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHH
Confidence 65443 45677899999999999996 77 679999999999999999888764432 12336678888888 77
Q ss_pred HHHHHHHHHHHh
Q 036742 556 RKAIMALEACKA 567 (629)
Q Consensus 556 R~AInlLq~~~~ 567 (629)
..+++.....+.
T Consensus 362 ~~l~~eAa~~a~ 373 (644)
T PRK10733 362 ANLVNEAALFAA 373 (644)
T ss_pred HHHHHHHHHHHH
Confidence 777776655443
No 143
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1e-13 Score=155.88 Aligned_cols=179 Identities=20% Similarity=0.208 Sum_probs=121.6
Q ss_pred CCCCCcccccHHHHHHHHHHHH-----------cCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 354 PSSLNGFICHRHEAQLLKELVV-----------DGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~-----------~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
-.+|.|+.|.+++++.|.+.+. .+.+| ++||.||||||||.||+++|.+..-+.+ .+
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf-----------~i 214 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF-----------SI 214 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCce-----------ec
Confidence 3578999999999999998884 22344 8999999999999999999998643322 11
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHHHhcc
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIMDGY 487 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlrilEe~ 487 (629)
.+| .++|+-. ..+. ..+|++ |..+....+|||||||+|.+.. ...+.|+--|+.+
T Consensus 215 SGS-~FVemfV--GvGA-----sRVRdL---F~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 215 SGS-DFVEMFV--GVGA-----SRVRDL---FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred cch-hhhhhhc--CCCc-----HHHHHH---HHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 222 2222211 1221 122332 2233344568999999999922 3566777777877
Q ss_pred CC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Q 036742 488 TD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL 555 (629)
Q Consensus 488 ~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDi 555 (629)
.. .+.+|.+||+++-++++|.+ |+ ..|.+..|+.....+||+.++.+-.+. .+-.+..|++.+.|-.
T Consensus 284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfs 355 (596)
T COG0465 284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFS 355 (596)
T ss_pred CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcc
Confidence 64 44566678999999999987 34 578889999999999999666654443 1223566888876643
No 144
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.4e-12 Score=138.56 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=107.8
Q ss_pred CCcccccHHHHHHHHHHHH--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 357 LNGFICHRHEAQLLKELVV--------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~--------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
|+++|.++.+...|..+.. ...+.+||||||||||||.+|+-||..- |.++ .+...+.|.
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-GlDY-----------A~mTGGDVA 421 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-GLDY-----------AIMTGGDVA 421 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-CCce-----------ehhcCCCcc
Confidence 7999999998888887774 3345689999999999999999999984 6553 223333343
Q ss_pred EEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchh---------hHH---HHHHHHHHHhccCCCcEEEE
Q 036742 429 ELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKA---------AEH---IQYLIKWIMDGYTDSCKLIL 495 (629)
Q Consensus 429 eInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~L---------s~~---~q~aLlrilEe~~~~~~~IL 495 (629)
.+.+ +-+..+.+.|.-.. ...+-+|||||+|.+ ++. +.|+|+--.-.-+..+.++|
T Consensus 422 PlG~-----------qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvl 490 (630)
T KOG0742|consen 422 PLGA-----------QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVL 490 (630)
T ss_pred ccch-----------HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEe
Confidence 2222 12222222232222 234459999999987 222 33333322233456678899
Q ss_pred EecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh
Q 036742 496 CCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK 534 (629)
Q Consensus 496 itN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k 534 (629)
++|.+..++.++-.|+ .+++|+-|-.++...+|...+.+
T Consensus 491 AtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 491 ATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred ccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 9999999999999998 68999999999988888776554
No 145
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7e-14 Score=143.14 Aligned_cols=190 Identities=15% Similarity=0.178 Sum_probs=122.5
Q ss_pred hhhccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCC
Q 036742 348 WADKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWP 414 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~ 414 (629)
=.+|-.-.+++||.|.+..++.|++.+. .| ...+++|||+||||||.||+|+|+......+
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl------ 248 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL------ 248 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh------
Confidence 3466666788999999999999999985 22 2338999999999999999999988533321
Q ss_pred ccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHH
Q 036742 415 TQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWI 483 (629)
Q Consensus 415 ~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlri 483 (629)
.++++.. +...+.+--+-+++.|..+......|+||||||.+. .+.|..++.+
T Consensus 249 -----RvvGseL-----------iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLEL 312 (440)
T KOG0726|consen 249 -----RVVGSEL-----------IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLEL 312 (440)
T ss_pred -----hhhhHHH-----------HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHH
Confidence 1111110 011111111223334444445566799999999992 2456666666
Q ss_pred Hhc---c--CCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHH----HH
Q 036742 484 MDG---Y--TDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIA----TK 550 (629)
Q Consensus 484 lEe---~--~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia----~~ 550 (629)
++. + ...+.+|++||..+.++++|.+-. ..|.|+.|+...-..|+.-...+ +.+..++ ++.++ +.
T Consensus 313 LNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddl 390 (440)
T KOG0726|consen 313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDL 390 (440)
T ss_pred HHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhccccc
Confidence 553 2 366789999999999999998754 46999999987777666543332 3333322 33333 33
Q ss_pred ccCCHHHHHHH
Q 036742 551 AKQNLRKAIMA 561 (629)
Q Consensus 551 s~GDiR~AInl 561 (629)
++.||..+..-
T Consensus 391 SGAdIkAictE 401 (440)
T KOG0726|consen 391 SGADIKAICTE 401 (440)
T ss_pred ccccHHHHHHH
Confidence 55666554443
No 146
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.47 E-value=6.3e-13 Score=155.85 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=124.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...+|+||+|.+.+++.|.+++.. ....++|||||||||||++|+++|+++ +..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~-~~~------------ 239 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-GAY------------ 239 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh-CCe------------
Confidence 456889999999999999988741 122479999999999999999999987 322
Q ss_pred cccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHH
Q 036742 420 PVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIM 484 (629)
Q Consensus 420 ~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlril 484 (629)
++.+++.. ..+. ....++.+.... ....+.||||||+|.+. ...++.|+.++
T Consensus 240 -------~i~i~~~~i~~~~~g~---~~~~l~~lf~~a---~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~l 306 (733)
T TIGR01243 240 -------FISINGPEIMSKYYGE---SEERLREIFKEA---EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLM 306 (733)
T ss_pred -------EEEEecHHHhcccccH---HHHHHHHHHHHH---HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHh
Confidence 35555421 1111 112223322221 12335699999999883 23566788888
Q ss_pred hccCC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHccCCHHHH
Q 036742 485 DGYTD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLS-MTFAAKIATKAKQNLRKA 558 (629)
Q Consensus 485 Ee~~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is-~e~L~~Ia~~s~GDiR~A 558 (629)
+.... .+.+|.+||.++.+++++++ |+ ..+.|..|+.++..++|+..+.. +.+. +..++.+++.+.|....-
T Consensus 307 d~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gad 384 (733)
T TIGR01243 307 DGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGAD 384 (733)
T ss_pred hccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHH
Confidence 75543 34566689999999999987 55 56889999999999999865543 4443 345888999888865543
Q ss_pred HH
Q 036742 559 IM 560 (629)
Q Consensus 559 In 560 (629)
+.
T Consensus 385 l~ 386 (733)
T TIGR01243 385 LA 386 (733)
T ss_pred HH
Confidence 33
No 147
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.47 E-value=6.5e-13 Score=155.89 Aligned_cols=172 Identities=12% Similarity=0.156 Sum_probs=116.8
Q ss_pred CcccccHHHHHHHHHHHHc------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 358 NGFICHRHEAQLLKELVVD------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
.++.|++.+++.|.+|+.. ...+.++|+||||||||++++.+|+.+ +..+ +.++
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l-~~~~-------------------~~i~ 381 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT-GRKY-------------------VRMA 381 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh-CCCE-------------------EEEE
Confidence 3489999999999988862 234579999999999999999999986 3332 2222
Q ss_pred cccchhhHHHH-------HHHHHHHHHHhccCcCCCCeEEEEEccchhhHHH----HHHHHHHHhcc-------------
Q 036742 432 VNLQANAKYAL-------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHI----QYLIKWIMDGY------------- 487 (629)
Q Consensus 432 as~~~~~k~~l-------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~----q~aLlrilEe~------------- 487 (629)
....+....+. ...-..+.+.+... ...+.||||||+|.+.... +.+|+.+++.-
T Consensus 382 ~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~ 460 (784)
T PRK10787 382 LGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVD 460 (784)
T ss_pred cCCCCCHHHhccchhccCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEeccccccc
Confidence 21111100000 00000111111111 1234599999999997654 58899988741
Q ss_pred --CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHH-----h-----cCCCCCHHHHHHHHHHc
Q 036742 488 --TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR-----K-----EDFDLSMTFAAKIATKA 551 (629)
Q Consensus 488 --~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~-----k-----egl~is~e~L~~Ia~~s 551 (629)
.+++.||+|+|.. .|.++|++||.+|.|.+|+.+++.+|+++.+. + ..+.++++++..|++.+
T Consensus 461 ~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 461 YDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY 535 (784)
T ss_pred ccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC
Confidence 1566788888876 59999999999999999999999988877653 1 13567899999998754
No 148
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.47 E-value=4.5e-13 Score=163.06 Aligned_cols=139 Identities=9% Similarity=0.033 Sum_probs=88.4
Q ss_pred HHHhccCcCCCCeEEEEEccchhhHH-----HHHHHHHHHhcc-----CCCcEEEEEecCCccchHHHhh--cc-eEeec
Q 036742 450 RDNLAITPEVSNAMIVIYEVDKAAEH-----IQYLIKWIMDGY-----TDSCKLILCCEDDVDIIESVKT--HC-KVIKV 516 (629)
Q Consensus 450 ~~~~~~~~~~~~kVIIIDEID~Ls~~-----~q~aLlrilEe~-----~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F 516 (629)
...|..+...+++||+|||||.+... ..+.|+..|+.. ..++.||.+||.++.|++||++ |+ ..|.+
T Consensus 1722 r~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~I 1801 (2281)
T CHL00206 1722 TLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1801 (2281)
T ss_pred HHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEe
Confidence 34455555667899999999999542 245566666532 2456788899999999999998 77 57888
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHccCCH-HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 036742 517 DPPVTHEIMEVLIQIARKEDFDLSMT--FAAKIATKAKQNL-RKAIMALEACKALNYPFADDQPIPLGWEEVLIE 588 (629)
Q Consensus 517 ~ppt~eei~~iL~~i~~kegl~is~e--~L~~Ia~~s~GDi-R~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~e 588 (629)
+.|+..+..+++..+....++.+..+ .++.+|+.+.|-- +..-+++..++..+...........+++.++..
T Consensus 1802 r~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~R 1876 (2281)
T CHL00206 1802 RRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1876 (2281)
T ss_pred CCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 88888777777765555556666543 3788999887643 333344444333332222222223445544443
No 149
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.4e-12 Score=146.16 Aligned_cols=189 Identities=16% Similarity=0.117 Sum_probs=129.2
Q ss_pred CCCCcccccHHHHHHHHHHHHc----------CC---CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 355 SSLNGFICHRHEAQLLKELVVD----------GN---CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~~----------g~---~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
..++||.|..++++.|.+.+.- -+ ..+||||||||||||.||-++|..+ +..
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~~~-------------- 728 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-NLR-------------- 728 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-Cee--------------
Confidence 3579999999999999988851 11 1279999999999999999999985 222
Q ss_pred cCCcceEEEecc--cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhc--
Q 036742 422 ASSAHHVELNVN--LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDG-- 486 (629)
Q Consensus 422 ~sS~~vleInas--~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe-- 486 (629)
++-+..- ...++. ..++.+|+ .|..+...++||+|+||+|.+. ..+.|.|+.-|+.
T Consensus 729 -----fisvKGPElL~KyIG-aSEq~vR~---lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E 799 (952)
T KOG0735|consen 729 -----FISVKGPELLSKYIG-ASEQNVRD---LFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE 799 (952)
T ss_pred -----EEEecCHHHHHHHhc-ccHHHHHH---HHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc
Confidence 2222110 001110 11233333 3444455667999999999993 3577888888873
Q ss_pred cCCCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC----CHHHHH
Q 036742 487 YTDSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ----NLRKAI 559 (629)
Q Consensus 487 ~~~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G----DiR~AI 559 (629)
...++.++.+|.+++.|+++|.+-. ..+..+.|+..+..++|+.+....-+. ++..++.++..+.| |+...+
T Consensus 800 gl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll 878 (952)
T KOG0735|consen 800 GLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLL 878 (952)
T ss_pred ccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHH
Confidence 3466777778888999999999844 357778899999999998877653222 34458888888765 565555
Q ss_pred HHHHHHHhc
Q 036742 560 MALEACKAL 568 (629)
Q Consensus 560 nlLq~~~~~ 568 (629)
-..+.++..
T Consensus 879 ~~A~l~avh 887 (952)
T KOG0735|consen 879 YNAQLAAVH 887 (952)
T ss_pred HHHHHHHHH
Confidence 555554443
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.45 E-value=1.9e-12 Score=153.44 Aligned_cols=185 Identities=19% Similarity=0.256 Sum_probs=131.5
Q ss_pred CcccccHHHHHHHHHHHHc---C----CCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVD---G----NCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~---g----~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
..|+||+++++.+.+.+.. | ..| .+||+||+|||||.+|+++|..+++... .++
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~-----------------~~~ 628 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQ-----------------NLI 628 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCc-----------------ceE
Confidence 5689999999999888852 1 112 4899999999999999999999875421 134
Q ss_pred EEecccchhh---H-----------HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742 429 ELNVNLQANA---K-----------YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------ 488 (629)
Q Consensus 429 eInas~~~~~---k-----------~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------ 488 (629)
.++.+..... . +.-...+.+... .....||+||||+.+.++.++.|+.+++...
T Consensus 629 ~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~G 702 (852)
T TIGR03345 629 TINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVR------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEG 702 (852)
T ss_pred EEeHHHhhhhhhhccccCCCCCcccccccchHHHHHH------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCC
Confidence 4443221100 0 000011111111 1223599999999999999999999998653
Q ss_pred -----CCcEEEEEecCCc-----------------------------cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh
Q 036742 489 -----DSCKLILCCEDDV-----------------------------DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK 534 (629)
Q Consensus 489 -----~~~~~ILitN~~~-----------------------------~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k 534 (629)
.++.||||+|... .+.++|.+||.+|.|.+++.+++.+++...+..
T Consensus 703 r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 703 REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 6678999988411 134678899999999999999999888765432
Q ss_pred --------cC--CCCCHHHHHHHHHHccC---CHHHHHHHHHHH
Q 036742 535 --------ED--FDLSMTFAAKIATKAKQ---NLRKAIMALEAC 565 (629)
Q Consensus 535 --------eg--l~is~e~L~~Ia~~s~G---DiR~AInlLq~~ 565 (629)
.+ +.++++++++|++.+.+ +.|.+.+.|+..
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 14 46799999999999877 789988888763
No 151
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.45 E-value=6e-13 Score=120.88 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=78.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCC
Q 036742 382 ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVS 460 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~ 460 (629)
|||+||||||||++|+++|+.+ +.. ++++++...... .......+..+........ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~-------------------~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFP-------------------FIEIDGSELISSYAGDSEQKIRDFFKKAKKSA--K 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSE-------------------EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS--T
T ss_pred CEEECcCCCCeeHHHHHHHhhc-ccc-------------------cccccccccccccccccccccccccccccccc--c
Confidence 6899999999999999999996 432 577777432200 0011223333333221111 3
Q ss_pred CeEEEEEccchhhHHH-----------HHHHHHHHhccCC---CcEEEEEecCCccchHHHh-hcceE-eec
Q 036742 461 NAMIVIYEVDKAAEHI-----------QYLIKWIMDGYTD---SCKLILCCEDDVDIIESVK-THCKV-IKV 516 (629)
Q Consensus 461 ~kVIIIDEID~Ls~~~-----------q~aLlrilEe~~~---~~~~ILitN~~~~I~~aLr-SR~~~-I~F 516 (629)
+.||||||+|.+.... .+.|+..++.... .+.+|++||..+.++++|+ +||.. +.|
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence 5799999999996554 7788888887665 4789999999999999999 99854 444
No 152
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.43 E-value=9.2e-12 Score=127.84 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=91.3
Q ss_pred EEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC-------------CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED-------------DVDIIESVKTHCKVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 463 VIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~-------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL~ 529 (629)
||||||++.|.-+++..|.+.+|.+- ...+||++|. +..|.+.|..|+.+|.-.+++++++++|+.
T Consensus 299 VLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~ 377 (456)
T KOG1942|consen 299 VLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIK 377 (456)
T ss_pred ceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHH
Confidence 99999999999999999999998543 2346677664 344788999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHH-ccCCHHHHHHHHHHHHhcCC
Q 036742 530 QIARKEDFDLSMTFAAKIATK-AKQNLRKAIMALEACKALNY 570 (629)
Q Consensus 530 ~i~~kegl~is~e~L~~Ia~~-s~GDiR~AInlLq~~~~~~~ 570 (629)
..++.+++.++++.++.+++. +...+|.++.+|--+...+.
T Consensus 378 ~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak 419 (456)
T KOG1942|consen 378 IRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAK 419 (456)
T ss_pred HHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHH
Confidence 999999999999999999986 46789999999975544433
No 153
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=8.6e-13 Score=148.68 Aligned_cols=169 Identities=13% Similarity=0.141 Sum_probs=119.0
Q ss_pred CcccccHHHHHHHHHHHH------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 358 NGFICHRHEAQLLKELVV------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
.|-.|.+++++.+.++|. .-..|.++|+||||+|||+|++.||+.+.... +.+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf--------------------vR~s 382 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF--------------------VRIS 382 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE--------------------EEEe
Confidence 456789999999999885 12235788999999999999999999984332 2222
Q ss_pred cccchhhHHHHHHHHHHHHHHhccCcC-----------CCCeEEEEEccchhhH----HHHHHHHHHHhcc---------
Q 036742 432 VNLQANAKYALMGLVKEIRDNLAITPE-----------VSNAMIVIYEVDKAAE----HIQYLIKWIMDGY--------- 487 (629)
Q Consensus 432 as~~~~~k~~l~~~lrei~~~~~~~~~-----------~~~kVIIIDEID~Ls~----~~q~aLlrilEe~--------- 487 (629)
---.+. +..+|..+.+|..+-+ ..+.|++|||||.|+. +-..+|+.+++--
T Consensus 383 LGGvrD-----EAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhY 457 (782)
T COG0466 383 LGGVRD-----EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHY 457 (782)
T ss_pred cCcccc-----HHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcc
Confidence 210010 0122233333322221 1244999999999954 4556777776521
Q ss_pred ------CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHH-----HHhcC-----CCCCHHHHHHHHHHc
Q 036742 488 ------TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQI-----ARKED-----FDLSMTFAAKIATKA 551 (629)
Q Consensus 488 ------~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i-----~~keg-----l~is~e~L~~Ia~~s 551 (629)
.+++.||+|+|..+.|..+|+.|+.+|++..|+.+|-..|.+++ ....| +.++++++..|++..
T Consensus 458 Lev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y 537 (782)
T COG0466 458 LEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY 537 (782)
T ss_pred ccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence 16678999999999999999999999999999999988887765 23333 467899998888764
No 154
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.42 E-value=3.5e-12 Score=136.28 Aligned_cols=234 Identities=16% Similarity=0.128 Sum_probs=136.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCC-CC-cccccc-cc---CC--
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEK-WP-TQVLVP-VA---SS-- 424 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~-~~-~~v~~~-i~---sS-- 424 (629)
.|..|++|+|+++++..|.-.+......|+||+||||||||++|++++..+.+....... +. ..+.+. .. ..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 477899999999999887755542235689999999999999999999987321110000 00 000000 00 00
Q ss_pred -----cceEEE--ecccc--hhhHHHHHHHHHHHHHHhccC----cCCCCeEEEEEccchhhHHHHHHHHHHHhccC---
Q 036742 425 -----AHHVEL--NVNLQ--ANAKYALMGLVKEIRDNLAIT----PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT--- 488 (629)
Q Consensus 425 -----~~vleI--nas~~--~~~k~~l~~~lrei~~~~~~~----~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~--- 488 (629)
..++.+ ++..+ .|.- .+...+. ...+... ....+.+|||||++.+....++.|+..|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~-d~~~~l~--~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v 159 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGAL-DIERALT--RGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVV 159 (334)
T ss_pred ccccCCccccCCCCCCcceeecch-hhhhhhh--cCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEE
Confidence 000111 11111 0100 0000000 0011111 11223599999999999999999999998542
Q ss_pred --------CCcEEEE--EecCCc-cchHHHhhcce-EeeccCCCH-HHHHHHHHHHHHh---------------------
Q 036742 489 --------DSCKLIL--CCEDDV-DIIESVKTHCK-VIKVDPPVT-HEIMEVLIQIARK--------------------- 534 (629)
Q Consensus 489 --------~~~~~IL--itN~~~-~I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i~~k--------------------- 534 (629)
...+|++ +.|..+ .+.+++..||. .+.+.++.. ++..++|.+....
T Consensus 160 ~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (334)
T PRK13407 160 EREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGR 239 (334)
T ss_pred EECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHH
Confidence 1223444 344333 47889999984 566766655 5555555542211
Q ss_pred --------cCCCCCHHHHHHHHHHcc----CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742 535 --------EDFDLSMTFAAKIATKAK----QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL 589 (629)
Q Consensus 535 --------egl~is~e~L~~Ia~~s~----GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei 589 (629)
..+.++++++.+|++.+. ...|-.+.++..+++.+..-..+..++.+++.+..-+
T Consensus 240 i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 240 ILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred HHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence 235678888888876642 3678888888888777766666777777776555443
No 155
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=9e-13 Score=147.83 Aligned_cols=180 Identities=13% Similarity=0.133 Sum_probs=117.3
Q ss_pred CcccccHHHHHHHHHHHHcCC------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 358 NGFICHRHEAQLLKELVVDGN------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
+|-.|.+++++.+.++|.-+. .+.++|+||||+|||++|+.||+.|...++ .|.+.+-..+.+|.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf---------RfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF---------RFSVGGMTDVAEIK 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE---------EEeccccccHHhhc
Confidence 567899999999999996332 235789999999999999999999854432 12222222222221
Q ss_pred cccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH----HHHHHHHHHHhcc---------------CCCcE
Q 036742 432 VNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE----HIQYLIKWIMDGY---------------TDSCK 492 (629)
Q Consensus 432 as~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~----~~q~aLlrilEe~---------------~~~~~ 492 (629)
..--.++...-..++..+.. -...+.+++|||||.+.. +-..+|+.+++.- .+.+.
T Consensus 482 GHRRTYVGAMPGkiIq~LK~-----v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKK-----VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ccceeeeccCChHHHHHHHh-----hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 10000000000011111110 012244999999999943 4456777776521 15567
Q ss_pred EEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHH-----Hhc-----CCCCCHHHHHHHHHHc
Q 036742 493 LILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA-----RKE-----DFDLSMTFAAKIATKA 551 (629)
Q Consensus 493 ~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~-----~ke-----gl~is~e~L~~Ia~~s 551 (629)
||+|+|..+.|.++|+.|+.+|++..|..+|-..|..+++ ... .++++++++..|++..
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 8999999999999999999999999999999887776653 233 3578888887776553
No 156
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.39 E-value=3.2e-11 Score=123.79 Aligned_cols=219 Identities=14% Similarity=0.118 Sum_probs=124.1
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC-cceE-EEe----cccch
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS-AHHV-ELN----VNLQA 436 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS-~~vl-eIn----as~~~ 436 (629)
+..+...+...+..+ .+.++|+||+|+||||+++.++..+....... +..+....+ ..++ .+. .....
T Consensus 28 ~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~l~~i~~~lG~~~~~ 101 (269)
T TIGR03015 28 HKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERVVA-----AKLVNTRVDAEDLLRMVAADFGLETEG 101 (269)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE-----eeeeCCCCCHHHHHHHHHHHcCCCCCC
Confidence 344555566555543 33588999999999999999999874222100 000000000 0000 000 00000
Q ss_pred hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC---CCcEEEEEecCCc------cchHHH
Q 036742 437 NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---DSCKLILCCEDDV------DIIESV 507 (629)
Q Consensus 437 ~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---~~~~~ILitN~~~------~I~~aL 507 (629)
.....+...+....... .......||||||+|.+.....+.|+.+.+.-. ..+.||++..... .-...+
T Consensus 102 ~~~~~~~~~l~~~l~~~--~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l 179 (269)
T TIGR03015 102 RDKAALLRELEDFLIEQ--FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQL 179 (269)
T ss_pred CCHHHHHHHHHHHHHHH--HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHH
Confidence 00000111111111111 112334599999999998888887776654321 2234455543210 123457
Q ss_pred hhcc-eEeeccCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH
Q 036742 508 KTHC-KVIKVDPPVTHEIMEVLIQIARKED----FDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW 582 (629)
Q Consensus 508 rSR~-~~I~F~ppt~eei~~iL~~i~~keg----l~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ 582 (629)
.+|+ ..+.+.+++.+++.+++...+...+ ..+++++++.|++.++|++|.+..++..+...++....+.....++
T Consensus 180 ~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v 259 (269)
T TIGR03015 180 RQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEV 259 (269)
T ss_pred HhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 7775 5788999999999999998877544 4689999999999999999998887776654443333333333455
Q ss_pred HHHHHHH
Q 036742 583 EEVLIEL 589 (629)
Q Consensus 583 ek~l~ei 589 (629)
+.++.++
T Consensus 260 ~~~~~~~ 266 (269)
T TIGR03015 260 REVIAEI 266 (269)
T ss_pred HHHHHHh
Confidence 5544443
No 157
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=6.9e-11 Score=119.72 Aligned_cols=185 Identities=13% Similarity=0.160 Sum_probs=140.8
Q ss_pred HHHHHHHHHcCCCCe-EEEEcCCC-CcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc--hhhHHHH
Q 036742 367 AQLLKELVVDGNCPH-ILIKGQSG-SGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ--ANAKYAL 442 (629)
Q Consensus 367 ~~~Lk~~L~~g~~p~-ILL~GPPG-tGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~--~~~k~~l 442 (629)
+..|...++.++..| .||.|..+ .||..++..+++.+.|.. +.......+..+.+... .....+-
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----------i~~~~HPD~~~I~pe~~~~~~~~~I~ 70 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNS-----------IPLENNPDYHFIARETSATSNAKNIS 70 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccC-----------cccCCCCCEEEEeccccccccCCccc
Confidence 356888888888775 67999998 999999999999886653 23334455666654321 1112234
Q ss_pred HHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCH
Q 036742 443 MGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVT 521 (629)
Q Consensus 443 ~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~ 521 (629)
.+.+|++...+...+ .+..+|+|||++|.|+.++.++|++++|+++.++.|||+|..+..++++|+|||+.+.|..+..
T Consensus 71 IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~ 150 (263)
T PRK06581 71 IEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSIL 150 (263)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCH
Confidence 677888887776665 3567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565 (629)
Q Consensus 522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~ 565 (629)
....++....+.- -.+...++.|.+...-|....+...+.|
T Consensus 151 ~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~~ 191 (263)
T PRK06581 151 HAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFIDNL 191 (263)
T ss_pred HHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8887777655432 2244567778777766666666555544
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.38 E-value=4.3e-12 Score=148.26 Aligned_cols=168 Identities=16% Similarity=0.186 Sum_probs=115.4
Q ss_pred CcccccHHHHHHHHHHHHcC---------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVDG---------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g---------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
..|+||+++++.|.+++... ...++||+||||||||.+|+++|+.+. .. ++
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-~~-------------------~i 517 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-IE-------------------LL 517 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-CC-------------------cE
Confidence 45899999999999998721 123699999999999999999999973 22 23
Q ss_pred EEecccchh---hHHH-----------HHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742 429 ELNVNLQAN---AKYA-----------LMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------ 488 (629)
Q Consensus 429 eInas~~~~---~k~~-----------l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------ 488 (629)
.++++.... ...+ ....+.+... ....+||||||||.+.+++++.|+.++++..
T Consensus 518 ~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g 591 (758)
T PRK11034 518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNG 591 (758)
T ss_pred EeechhhcccccHHHHcCCCCCcccccccchHHHHHH------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCC
Confidence 344322110 0000 0011111111 1124699999999999999999999998542
Q ss_pred -----CCcEEEEEecCC-------------------------ccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHH----
Q 036742 489 -----DSCKLILCCEDD-------------------------VDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIAR---- 533 (629)
Q Consensus 489 -----~~~~~ILitN~~-------------------------~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~---- 533 (629)
.++.||+|+|.- ..+.+.|..|+ .++.|.+++.+++.+++...+.
T Consensus 592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~ 671 (758)
T PRK11034 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA 671 (758)
T ss_pred ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 356689999832 11457788888 4899999999999888765432
Q ss_pred ---hcCC--CCCHHHHHHHHHHc
Q 036742 534 ---KEDF--DLSMTFAAKIATKA 551 (629)
Q Consensus 534 ---kegl--~is~e~L~~Ia~~s 551 (629)
..++ .++++++++|++..
T Consensus 672 ~l~~~~i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 672 QLDQKGVSLEVSQEARDWLAEKG 694 (758)
T ss_pred HHHHCCCCceECHHHHHHHHHhC
Confidence 2344 55888888888664
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.37 E-value=8.6e-12 Score=147.88 Aligned_cols=171 Identities=15% Similarity=0.227 Sum_probs=117.8
Q ss_pred CcccccHHHHHHHHHHHHcC-------CCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVDG-------NCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g-------~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
+.|+||+++++.|...+... .-| .+||+||+|||||++|+++|+.++|... .++
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~-----------------~~~ 571 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSED-----------------AMI 571 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCcc-----------------ceE
Confidence 66899999999999888622 112 5899999999999999999999876531 123
Q ss_pred EEecccchh---hHHH-----------HHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742 429 ELNVNLQAN---AKYA-----------LMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------ 488 (629)
Q Consensus 429 eInas~~~~---~k~~-----------l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------ 488 (629)
.++.+.... ...+ ....+.+.... ...+||||||||.+++++++.|++++|+..
T Consensus 572 ~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~------~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g 645 (821)
T CHL00095 572 RLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK------KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKG 645 (821)
T ss_pred EEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh------CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCC
Confidence 333221100 0000 00111111111 123699999999999999999999999642
Q ss_pred -----CCcEEEEEecCCcc-------------------------------------chHHHhhcc-eEeeccCCCHHHHH
Q 036742 489 -----DSCKLILCCEDDVD-------------------------------------IIESVKTHC-KVIKVDPPVTHEIM 525 (629)
Q Consensus 489 -----~~~~~ILitN~~~~-------------------------------------I~~aLrSR~-~~I~F~ppt~eei~ 525 (629)
.++.||+|+|.-.. +.+.|.+|+ .+|.|.+++.+++.
T Consensus 646 ~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~ 725 (821)
T CHL00095 646 RTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVW 725 (821)
T ss_pred cEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHH
Confidence 56789999874211 124678888 79999999999999
Q ss_pred HHHHHHHHh-------cC--CCCCHHHHHHHHHHc
Q 036742 526 EVLIQIARK-------ED--FDLSMTFAAKIATKA 551 (629)
Q Consensus 526 ~iL~~i~~k-------eg--l~is~e~L~~Ia~~s 551 (629)
+++...+.+ .+ +.+++++++.|++.+
T Consensus 726 ~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 726 EIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 888766442 22 467899999998863
No 160
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.35 E-value=1.4e-11 Score=144.44 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=116.3
Q ss_pred CcccccHHHHHHHHHHHHcC---------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVDG---------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g---------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
..|+||+++++.|.+++... ...++||+||+|||||++|++||+.+.+. ++
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~--------------------~~ 513 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH--------------------LE 513 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC--------------------eE
Confidence 56899999999999888632 12258999999999999999999997432 22
Q ss_pred EEecccchh---hHHH-----------HHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742 429 ELNVNLQAN---AKYA-----------LMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------ 488 (629)
Q Consensus 429 eInas~~~~---~k~~-----------l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------ 488 (629)
.++.+.... ...+ ....+.+... ...++||||||||.+.+++++.|+++++...
T Consensus 514 ~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~------~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g 587 (731)
T TIGR02639 514 RFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVR------KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNG 587 (731)
T ss_pred EEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHH------hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCC
Confidence 333221100 0000 0011112111 1224699999999999999999999998641
Q ss_pred -----CCcEEEEEecCCc-------------------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh---
Q 036742 489 -----DSCKLILCCEDDV-------------------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK--- 534 (629)
Q Consensus 489 -----~~~~~ILitN~~~-------------------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k--- 534 (629)
.++.||+|+|.-. .+.+.|..|+ .+|.|.+++.+++.+++...+.+
T Consensus 588 ~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 588 RKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred cccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 3566888887531 1356778888 58999999999999988876542
Q ss_pred ----c--CCCCCHHHHHHHHHHc
Q 036742 535 ----E--DFDLSMTFAAKIATKA 551 (629)
Q Consensus 535 ----e--gl~is~e~L~~Ia~~s 551 (629)
. .+.++++++++|++.+
T Consensus 668 ~l~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 668 QLNEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred HHHhCCCeEEeCHHHHHHHHHhC
Confidence 2 2567889999888864
No 161
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35 E-value=2.5e-11 Score=110.03 Aligned_cols=139 Identities=17% Similarity=0.250 Sum_probs=92.3
Q ss_pred cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHH
Q 036742 361 ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKY 440 (629)
Q Consensus 361 iG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~ 440 (629)
+|++.++..+..++......+++|+||||||||++++.+++.+.... ..++.+++.......
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~-----------------~~v~~~~~~~~~~~~- 62 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG-----------------APFLYLNASDLLEGL- 62 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCC-----------------CCeEEEehhhhhhhh-
Confidence 36778888888888876667899999999999999999999874211 125566553222111
Q ss_pred HHHHHHHH--HHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc------CCCcEEEEEecCCc--cchHHHhhc
Q 036742 441 ALMGLVKE--IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY------TDSCKLILCCEDDV--DIIESVKTH 510 (629)
Q Consensus 441 ~l~~~lre--i~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~------~~~~~~ILitN~~~--~I~~aLrSR 510 (629)
........ ..............+|||||++.+.......+...++.. ...+.+|++++... .+.+.+.+|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r 142 (151)
T cd00009 63 VVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDR 142 (151)
T ss_pred HHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhh
Confidence 00000100 001111112234569999999999777777777777755 35778999998877 688899999
Q ss_pred c-eEeecc
Q 036742 511 C-KVIKVD 517 (629)
Q Consensus 511 ~-~~I~F~ 517 (629)
+ ..+.|+
T Consensus 143 ~~~~i~~~ 150 (151)
T cd00009 143 LDIRIVIP 150 (151)
T ss_pred hccEeecC
Confidence 9 566654
No 162
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.34 E-value=4.7e-11 Score=132.07 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=129.1
Q ss_pred CcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742 358 NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN 437 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~ 437 (629)
..|+|++++++.+...+..+. |+||.||||||||++|++|+..+..... +..+.+.-..
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~------------------F~~~~~~ftt- 78 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARA------------------FEYLMTRFST- 78 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCc------------------ceeeeeeecC-
Confidence 678999999999998888765 7999999999999999999998632211 1111110000
Q ss_pred hHHHHHH-HHHHHH--HHhc--cCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccC---------CCcEE-EEEecCCc
Q 036742 438 AKYALMG-LVKEIR--DNLA--ITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------DSCKL-ILCCEDDV 501 (629)
Q Consensus 438 ~k~~l~~-~lrei~--~~~~--~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------~~~~~-ILitN~~~ 501 (629)
...++.. .+.... ..|. ..+.. ...|||+|||..+++..++.|+..|++.. -..+| ++++|...
T Consensus 79 p~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP 158 (498)
T PRK13531 79 PEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP 158 (498)
T ss_pred cHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc
Confidence 0000000 011111 1111 11111 22399999999999999999999996432 12244 44555443
Q ss_pred c---chHHHhhcce-EeeccCCCH-HHHHHHHHHHHH-----------------------hcCCCCCHHHHHHHHHHcc-
Q 036742 502 D---IIESVKTHCK-VIKVDPPVT-HEIMEVLIQIAR-----------------------KEDFDLSMTFAAKIATKAK- 552 (629)
Q Consensus 502 ~---I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i~~-----------------------kegl~is~e~L~~Ia~~s~- 552 (629)
. ..+++..|+. .+.++++.. ++..++|..... -..+.+++.++++|++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~ 238 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQ 238 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHH
Confidence 2 5568999985 467777763 444566643211 1345677888888776532
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCCCCCCCchhHH
Q 036742 553 ---------QNLRKAIMALEACKALNYPFADDQPIPLGWE 583 (629)
Q Consensus 553 ---------GDiR~AInlLq~~~~~~~~~~~~~~~~~~~e 583 (629)
-..|..+.++..+++.++-.+.+..+|.|+.
T Consensus 239 lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 239 LDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 3568888888888887777777777777755
No 163
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.33 E-value=2.7e-11 Score=132.93 Aligned_cols=173 Identities=17% Similarity=0.196 Sum_probs=105.5
Q ss_pred cccccHHHHHHHHHHHH-------cC---------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 359 GFICHRHEAQLLKELVV-------DG---------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~-------~g---------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.|+||+++++.|..++. .+ ...++||+||||||||++|+++|+.+....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf--------------- 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF--------------- 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc---------------
Confidence 48999999998877662 11 124799999999999999999999874332
Q ss_pred CCcceEEEecccc---hhhHHHHHHHHHHHHHHhcc-CcCCCCeEEEEEccchhhH--------------HHHHHHHHHH
Q 036742 423 SSAHHVELNVNLQ---ANAKYALMGLVKEIRDNLAI-TPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIM 484 (629)
Q Consensus 423 sS~~vleInas~~---~~~k~~l~~~lrei~~~~~~-~~~~~~kVIIIDEID~Ls~--------------~~q~aLlril 484 (629)
+.+++... .+....+...+......... .....+.||||||||.+.. ++|++|+++|
T Consensus 137 -----~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 137 -----AIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred -----eecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence 22222110 00000112223332221110 1123456999999999964 4899999999
Q ss_pred hccC-------------CCcEEEEEecC--------C------------------------------c------------
Q 036742 485 DGYT-------------DSCKLILCCED--------D------------------------------V------------ 501 (629)
Q Consensus 485 Ee~~-------------~~~~~ILitN~--------~------------------------------~------------ 501 (629)
|... ....+|.|+|- . .
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~ 291 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLI 291 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHH
Confidence 8421 00112222221 0 0
Q ss_pred --cchHHHhhcc-eEeeccCCCHHHHHHHHHH----H-------HHhcCC--CCCHHHHHHHHHHc
Q 036742 502 --DIIESVKTHC-KVIKVDPPVTHEIMEVLIQ----I-------ARKEDF--DLSMTFAAKIATKA 551 (629)
Q Consensus 502 --~I~~aLrSR~-~~I~F~ppt~eei~~iL~~----i-------~~kegl--~is~e~L~~Ia~~s 551 (629)
.+.|.|..|+ .++.|.+++.+++..|+.. + +...++ .++++++.+|++.+
T Consensus 292 ~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 292 KFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred HHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 0245566676 5788999999999988862 2 223344 56899999999874
No 164
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-11 Score=144.15 Aligned_cols=193 Identities=17% Similarity=0.124 Sum_probs=134.5
Q ss_pred CCCCcccccHHHHHHHHHHHH-------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 355 SSLNGFICHRHEAQLLKELVV-------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~-------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
..|++|.|.+.++..|++++- -.+..++|||||||||||..|+++|..+.... .++.+-.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-------~kisffm 334 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-------RKISFFM 334 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-------cccchhh
Confidence 468999999999999999984 12234799999999999999999999863221 0111111
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhccCCC
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGYTDS 490 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~~~~ 490 (629)
...+..+ +.+.| +.-++..-.|..+....+.|||+||||.|.+ .....|+-+|+.....
T Consensus 335 rkgaD~l----skwvg------EaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR 404 (1080)
T KOG0732|consen 335 RKGADCL----SKWVG------EAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR 404 (1080)
T ss_pred hcCchhh----ccccC------cHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC
Confidence 1111110 11222 1122333333333444556999999998832 3445677888866555
Q ss_pred c--EEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742 491 C--KLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564 (629)
Q Consensus 491 ~--~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~ 564 (629)
. .+|.+||+++.++++||+.. ..+.|+-|+.+...++|...-.+..-.++...+..|++.+.|..+.-|..|=+
T Consensus 405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 4 45557899999999999865 46899999999999999877777667888999999999999887776666533
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=1e-10 Score=139.16 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=118.4
Q ss_pred CCcccccHHHHHHHHHHHHcC-------C--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcce
Q 036742 357 LNGFICHRHEAQLLKELVVDG-------N--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHH 427 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~~g-------~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~v 427 (629)
...|+|++.++..|...+... . ...+||+||+|||||++|++||..+++... .+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~-----------------~~ 629 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDD-----------------AM 629 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC-----------------cE
Confidence 467899999999999888632 1 125899999999999999999998864321 14
Q ss_pred EEEecccchhhHHHHHHHH------------HHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------
Q 036742 428 VELNVNLQANAKYALMGLV------------KEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------- 488 (629)
Q Consensus 428 leInas~~~~~k~~l~~~l------------rei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------- 488 (629)
+.++++..... .....++ ..+..... ...+.||||||++.+.+..++.|+.+++...
T Consensus 630 i~id~se~~~~-~~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr 705 (857)
T PRK10865 630 VRIDMSEFMEK-HSVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGR 705 (857)
T ss_pred EEEEhHHhhhh-hhHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCce
Confidence 55555321110 0000111 00011100 1123599999999999999999999998542
Q ss_pred ----CCcEEEEEecCCc-------------------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh----
Q 036742 489 ----DSCKLILCCEDDV-------------------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK---- 534 (629)
Q Consensus 489 ----~~~~~ILitN~~~-------------------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k---- 534 (629)
.++.||+|||... .+.++|.+|+ .++.|.|++.+++..++...+.+
T Consensus 706 ~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~r 785 (857)
T PRK10865 706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKR 785 (857)
T ss_pred EEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 3345889998621 1346788999 89999999999998887765433
Q ss_pred ---cC--CCCCHHHHHHHHHHc
Q 036742 535 ---ED--FDLSMTFAAKIATKA 551 (629)
Q Consensus 535 ---eg--l~is~e~L~~Ia~~s 551 (629)
.+ +.+++++++.|++..
T Consensus 786 l~~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 786 LEERGYEIHISDEALKLLSENG 807 (857)
T ss_pred HHhCCCcCcCCHHHHHHHHHcC
Confidence 23 457899999988764
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.31 E-value=5.3e-11 Score=141.70 Aligned_cols=185 Identities=14% Similarity=0.176 Sum_probs=127.5
Q ss_pred CcccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
..|+|++.+++.+...+.... ...+||+||+|||||++|++||..+++... .++
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~-----------------~~i 627 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDED-----------------AMV 627 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCC-----------------cEE
Confidence 568999999999999886421 225899999999999999999999865421 134
Q ss_pred EEecccchhh---HHHH-----------HHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742 429 ELNVNLQANA---KYAL-----------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------ 488 (629)
Q Consensus 429 eInas~~~~~---k~~l-----------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------ 488 (629)
.++++..... ..++ ...+.+.... ..+.|||||||+.+++.+++.|+.++++..
T Consensus 628 ~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~------~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g 701 (852)
T TIGR03346 628 RIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR------KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQG 701 (852)
T ss_pred EEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc------CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCC
Confidence 4444321110 0000 0011111111 123599999999999999999999998642
Q ss_pred -----CCcEEEEEecCCcc-------------------------chHHHhhcc-eEeeccCCCHHHHHHHHHHHHH----
Q 036742 489 -----DSCKLILCCEDDVD-------------------------IIESVKTHC-KVIKVDPPVTHEIMEVLIQIAR---- 533 (629)
Q Consensus 489 -----~~~~~ILitN~~~~-------------------------I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~---- 533 (629)
.++.||+|||.-.. +.+.|..|+ .++.|.|++.+++..++...+.
T Consensus 702 ~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~ 781 (852)
T TIGR03346 702 RTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRK 781 (852)
T ss_pred eEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHH
Confidence 45669999987221 234566777 6899999999998887766543
Q ss_pred ---hc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Q 036742 534 ---KE--DFDLSMTFAAKIATKA---KQNLRKAIMALEAC 565 (629)
Q Consensus 534 ---ke--gl~is~e~L~~Ia~~s---~GDiR~AInlLq~~ 565 (629)
.. .+.+++++++.|++.. .+.+|..-+.++..
T Consensus 782 ~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 782 RLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQRE 821 (852)
T ss_pred HHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHH
Confidence 22 2567999999999874 47788877777654
No 167
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3e-11 Score=135.27 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=130.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHH-----------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVV-----------D--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~-----------~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
.+.. +++.|.......+++++. . ...+++|+|||||||||.++++||++. +..
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-~a~------------ 245 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-GAF------------ 245 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-Cce------------
Confidence 5556 788888888888888774 1 123479999999999999999999995 332
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC-CeEEEEEccchhhH----------HHHHHHHHHHhccC
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS-NAMIVIYEVDKAAE----------HIQYLIKWIMDGYT 488 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~-~kVIIIDEID~Ls~----------~~q~aLlrilEe~~ 488 (629)
++.+|+..... ....+.-.+++..|......+ +.+|||||+|.+.+ .....|+.+++...
T Consensus 246 -------~~~i~~peli~--k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~ 316 (693)
T KOG0730|consen 246 -------LFLINGPELIS--KFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK 316 (693)
T ss_pred -------eEecccHHHHH--hcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc
Confidence 56666631110 011111222333344444444 67999999999953 35567888888665
Q ss_pred --CCcEEEEEecCCccchHHHhh-cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Q 036742 489 --DSCKLILCCEDDVDIIESVKT-HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR 556 (629)
Q Consensus 489 --~~~~~ILitN~~~~I~~aLrS-R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR 556 (629)
.++.+|.++|.+..|++++|+ |+ ..+.+.-|+..+..++|+.++.+.++. ++..+..++..++|...
T Consensus 317 ~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvG 387 (693)
T KOG0730|consen 317 PDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVG 387 (693)
T ss_pred CcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhH
Confidence 556677788999999999997 77 568889999999999999999887776 67889999999988664
No 168
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.30 E-value=8.1e-11 Score=126.30 Aligned_cols=234 Identities=12% Similarity=0.115 Sum_probs=143.5
Q ss_pred CCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCC------------ccccccccC
Q 036742 356 SLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWP------------TQVLVPVAS 423 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~------------~~v~~~i~s 423 (629)
.|.+|+||++++..|...+......++||.||+|||||++|++++..+.........-. .+.......
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~ 94 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNG 94 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhccc
Confidence 68999999999999988888877789999999999999999999988753221100000 000000000
Q ss_pred --------CcceEEEec--ccchhhHHHHHHHHHHHHHH-----hccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC
Q 036742 424 --------SAHHVELNV--NLQANAKYALMGLVKEIRDN-----LAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT 488 (629)
Q Consensus 424 --------S~~vleIna--s~~~~~k~~l~~~lrei~~~-----~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~ 488 (629)
...++.+.. ..++-... .+.-+.+... ........+.+|||||++.+....|..|+..|++..
T Consensus 95 ~~~~~~~~~~~~~~lp~~~ted~l~G~--iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~ 172 (350)
T CHL00081 95 ETIETEKIKIPMVDLPLGATEDRVCGT--IDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGW 172 (350)
T ss_pred ccccceeccccceecCCCCchhhccCc--ccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCC
Confidence 000111111 11100000 0011111100 001112234599999999999999999999987521
Q ss_pred -----------CCcEEEEEe--cCCc-cchHHHhhcce-EeeccCCC-HHHHHHHHHHHHH-------------------
Q 036742 489 -----------DSCKLILCC--EDDV-DIIESVKTHCK-VIKVDPPV-THEIMEVLIQIAR------------------- 533 (629)
Q Consensus 489 -----------~~~~~ILit--N~~~-~I~~aLrSR~~-~I~F~ppt-~eei~~iL~~i~~------------------- 533 (629)
-..+|++++ |..+ .+.+++..|+. .+.+..+. .++..++|.+...
T Consensus 173 ~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~ 252 (350)
T CHL00081 173 NTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEEL 252 (350)
T ss_pred eEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccC
Confidence 123455544 3223 48899999984 67777776 3555555554311
Q ss_pred ----------hcCCCCCHHHHHHHHHHcc----CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742 534 ----------KEDFDLSMTFAAKIATKAK----QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA 591 (629)
Q Consensus 534 ----------kegl~is~e~L~~Ia~~s~----GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~ 591 (629)
-..+.++++++.+|++.+. -..|-.|.+++.+.+.+.--..+..++.|+..+..-+..
T Consensus 253 ~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 253 RSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 1236788999888877652 258999999998888777667777888887766665544
No 169
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-11 Score=128.27 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=110.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc-----------C-CCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD-----------G-NCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g-~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
+..+|+++.|.-+.+..|.+.+.- | ..| .++||||||+|||.+|++||..+....
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf------------ 194 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF------------ 194 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce------------
Confidence 344899999999999888887741 1 223 689999999999999999999974332
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHhc--
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMDG-- 486 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilEe-- 486 (629)
+.+.++.-. ...+.+--+-+++.|..+.....|||||||||.+. ...+..|-.++++
T Consensus 195 --------l~v~ss~lv--~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd 264 (388)
T KOG0651|consen 195 --------LKVVSSALV--DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD 264 (388)
T ss_pred --------EEeeHhhhh--hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc
Confidence 333232100 00111222233334444444455899999999982 2334444444332
Q ss_pred -c--CCCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccC
Q 036742 487 -Y--TDSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDF--DLSMTFAAKIATKAKQ 553 (629)
Q Consensus 487 -~--~~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl--~is~e~L~~Ia~~s~G 553 (629)
+ ...+++|+++|+++.|+++|.+- + ..+..+-|+....+.+++-....-.. .++.+.+-.+++..+|
T Consensus 265 gfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 265 GFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred cchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 2 26688999999999999999874 3 24555556555555555433222111 3456666666666655
No 170
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-10 Score=121.18 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=91.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc----cchhhHH-HHHHHHHHHHHHhcc
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN----LQANAKY-ALMGLVKEIRDNLAI 455 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas----~~~~~k~-~l~~~lrei~~~~~~ 455 (629)
-||||||||||||+|++++|+.|.--.. + -...+.++|||+. .+.+... .+..++..+.+....
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~--~---------~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTN--D---------RYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED 247 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeec--C---------ccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 4899999999999999999999742110 0 0122347899982 3433332 333334333332222
Q ss_pred CcCCCCeEEEEEccchhhH---------------HHHHHHHHHHhccC--CCcEEEEEecCCccchHHHhhcc-eEeecc
Q 036742 456 TPEVSNAMIVIYEVDKAAE---------------HIQYLIKWIMDGYT--DSCKLILCCEDDVDIIESVKTHC-KVIKVD 517 (629)
Q Consensus 456 ~~~~~~kVIIIDEID~Ls~---------------~~q~aLlrilEe~~--~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ 517 (629)
.+.-..++|||++.+.. .+.|+|+.-++... .++.++.|+|-.+.|+.++..|. .+..+.
T Consensus 248 --~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG 325 (423)
T KOG0744|consen 248 --RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVG 325 (423)
T ss_pred --CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecC
Confidence 11123789999999932 35678888887543 44445556677788999999998 567788
Q ss_pred CCCHHHHHHHHHHHH
Q 036742 518 PPVTHEIMEVLIQIA 532 (629)
Q Consensus 518 ppt~eei~~iL~~i~ 532 (629)
+|+...+.++++...
T Consensus 326 ~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 326 PPTAEAIYEILKSCI 340 (423)
T ss_pred CccHHHHHHHHHHHH
Confidence 999998888887654
No 171
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.27 E-value=1e-10 Score=125.32 Aligned_cols=232 Identities=13% Similarity=0.089 Sum_probs=137.8
Q ss_pred CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh-------CCCC-C-CCCCCccccccccCC---
Q 036742 357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-------GDAC-W-NEKWPTQVLVPVASS--- 424 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~-------g~~~-~-~~~~~~~v~~~i~sS--- 424 (629)
|..|+|+++++..|.-.+-.....+++|.|++|+||||++++++..+- +... . ......|..|.....
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 688999999998876666655567899999999999999999998862 1100 0 000111111121100
Q ss_pred --------cceEEE--ecccch--hhHHHHHHHHHHHHHHhc----cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC
Q 036742 425 --------AHHVEL--NVNLQA--NAKYALMGLVKEIRDNLA----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT 488 (629)
Q Consensus 425 --------~~vleI--nas~~~--~~k~~l~~~lrei~~~~~----~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~ 488 (629)
..+..+ ++..++ |.- .+...++. ..+. ......+.+|||||++.+....|..|+..|++..
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~-d~~~~l~~--g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~ 159 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTL-DIERALTE--GVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGW 159 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecch-hHhhHhhc--CCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCC
Confidence 001111 111111 100 00011100 0111 1111234699999999999999999999997532
Q ss_pred -----------CCcEEEEE--ecCCc-cchHHHhhcce-EeeccCCCH-HHHHHHHHHHHH-------------------
Q 036742 489 -----------DSCKLILC--CEDDV-DIIESVKTHCK-VIKVDPPVT-HEIMEVLIQIAR------------------- 533 (629)
Q Consensus 489 -----------~~~~~ILi--tN~~~-~I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i~~------------------- 533 (629)
-..+|+++ .|..+ .+.+++..|+. .+.+..+.. ++..++|.+...
T Consensus 160 ~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~ 239 (337)
T TIGR02030 160 NVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEAL 239 (337)
T ss_pred eEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcC
Confidence 11334443 34333 48889999995 566766665 555566655211
Q ss_pred ----------hcCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742 534 ----------KEDFDLSMTFAAKIATKA---KQ-NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA 591 (629)
Q Consensus 534 ----------kegl~is~e~L~~Ia~~s---~G-DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~ 591 (629)
-..+.++++++++|++.+ +. ..|..+.++..+++.+.--..+..++.|+..++.-+..
T Consensus 240 ~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 240 QAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 133568888888877654 33 47999999998888777666677777887766655443
No 172
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.6e-10 Score=125.21 Aligned_cols=153 Identities=11% Similarity=0.127 Sum_probs=102.4
Q ss_pred cCCCCCCcccccHHHHHHHH----HHHHc-------CC-C-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742 352 HQPSSLNGFICHRHEAQLLK----ELVVD-------GN-C-PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL 418 (629)
Q Consensus 352 yrP~tfddIiG~e~~~~~Lk----~~L~~-------g~-~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~ 418 (629)
-+|.+|+.++..+++++.|. .+++. |. + ++.|||||||||||+++-|+|++| +.++
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-~ydI---------- 263 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-NYDI---------- 263 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-CCce----------
Confidence 36789999998877665554 44432 22 1 379999999999999999999997 5543
Q ss_pred ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH------------------HHHHHH
Q 036742 419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE------------------HIQYLI 480 (629)
Q Consensus 419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~------------------~~q~aL 480 (629)
+.+++... .... + ++.++... ....||+|+|||.-.. -...-|
T Consensus 264 -------ydLeLt~v--~~n~----d-Lr~LL~~t-----~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGL 324 (457)
T KOG0743|consen 264 -------YDLELTEV--KLDS----D-LRHLLLAT-----PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGL 324 (457)
T ss_pred -------EEeeeccc--cCcH----H-HHHHHHhC-----CCCcEEEEeecccccccccccccccccccCCcceeehHHh
Confidence 13344332 1111 1 34433322 1234999999998621 112346
Q ss_pred HHHHhccCCC----cEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHh
Q 036742 481 KWIMDGYTDS----CKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARK 534 (629)
Q Consensus 481 lrilEe~~~~----~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~k 534 (629)
+..++..-+. ..||+|||..++|+|||.++. ..|++...+.+.......+.+.-
T Consensus 325 LNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 325 LNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 6666644333 468999999999999999954 46888888888887777766543
No 173
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.1e-11 Score=136.36 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=124.8
Q ss_pred CcccccHHHHHHHHHHHHcC---------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVDG---------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g---------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
..|+||++++..+...++.. +...+||.||.|+|||.||++||..|+|... .++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~-----------------ali 553 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQ-----------------ALI 553 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCc-----------------cce
Confidence 56899999999999999721 2236899999999999999999999987542 256
Q ss_pred EEecccchhhHHHHHHHHHHHHHHhccCcC----------CCCeEEEEEccchhhHHHHHHHHHHHhccC----------
Q 036742 429 ELNVNLQANAKYALMGLVKEIRDNLAITPE----------VSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------- 488 (629)
Q Consensus 429 eInas~~~~~k~~l~~~lrei~~~~~~~~~----------~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------- 488 (629)
.++.|..... ..+..++...- -|..... .-+.||++|||++.++++++.|+.+++...
T Consensus 554 R~DMSEy~Ek-HsVSrLIGaPP-GYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 554 RIDMSEYMEK-HSVSRLIGAPP-GYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred eechHHHHHH-HHHHHHhCCCC-CCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 6666543321 11111111000 0000000 113499999999999999999999998643
Q ss_pred -CCcEEEEEecCCc--------------------c--------chHHHhhcce-EeeccCCCHHHHHHHHHHHH------
Q 036742 489 -DSCKLILCCEDDV--------------------D--------IIESVKTHCK-VIKVDPPVTHEIMEVLIQIA------ 532 (629)
Q Consensus 489 -~~~~~ILitN~~~--------------------~--------I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~------ 532 (629)
.++.||||+|-=. . +.|.|+.|+. +|.|.+++.+.+.+|+...+
T Consensus 632 FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~ 711 (786)
T COG0542 632 FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKR 711 (786)
T ss_pred cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 5567899987411 1 2355667775 89999999999887776543
Q ss_pred -HhcCC--CCCHHHHHHHHHHcc---CCHHHHHHHHH
Q 036742 533 -RKEDF--DLSMTFAAKIATKAK---QNLRKAIMALE 563 (629)
Q Consensus 533 -~kegl--~is~e~L~~Ia~~s~---GDiR~AInlLq 563 (629)
...++ .+++++.++|++.+- .-.|-+-..+|
T Consensus 712 L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 712 LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHH
Confidence 23344 568999999988863 22344444444
No 174
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.25 E-value=2e-10 Score=116.83 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=126.5
Q ss_pred hccCCCCCCcccccHHHHHHH----HHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 350 DKHQPSSLNGFICHRHEAQLL----KELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~L----k~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
....|..+++++|.+..++.| ..++......|+||+|+.|||||++++++..++...++
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL----------------- 81 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL----------------- 81 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc-----------------
Confidence 345677889999988866555 45555666679999999999999999999999765543
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-hHHHHHHHHHHHh----ccCCCcEEEEEecCC
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-AEHIQYLIKWIMD----GYTDSCKLILCCEDD 500 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-s~~~q~aLlrilE----e~~~~~~~ILitN~~ 500 (629)
.++++....-.... +++..+. . ...+-|||+||+--= .......|..+|| ..+.++.|..|+|..
T Consensus 82 RlIev~k~~L~~l~----~l~~~l~----~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 82 RLIEVSKEDLGDLP----ELLDLLR----D--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred eEEEECHHHhccHH----HHHHHHh----c--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 36777664333321 2222222 1 112349999986432 2334455666665 456788888898876
Q ss_pred ccchH-----------------------HHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHc
Q 036742 501 VDIIE-----------------------SVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAA-----KIATKA 551 (629)
Q Consensus 501 ~~I~~-----------------------aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~-----~Ia~~s 551 (629)
+.+.+ +|..|| ..+.|.+++.++..+|+...+.+.|+.++++.+. ......
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 54432 244566 6799999999999999999999999999864443 333334
Q ss_pred cCCHHHHHHHHHH
Q 036742 552 KQNLRKAIMALEA 564 (629)
Q Consensus 552 ~GDiR~AInlLq~ 564 (629)
+.+-|.|-..+..
T Consensus 232 ~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 232 GRSGRTARQFIDD 244 (249)
T ss_pred CCCHHHHHHHHHH
Confidence 4566666655544
No 175
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.5e-10 Score=125.56 Aligned_cols=198 Identities=18% Similarity=0.191 Sum_probs=132.8
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
.-++| ..+.|.+.....+++|+. ......++++|-||+|||.+..-+...+.+... +.
T Consensus 145 ~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~---------------~~ 206 (529)
T KOG2227|consen 145 NTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK---------------SP 206 (529)
T ss_pred hcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcc---------------cc
Confidence 44555 677888888888888875 444557999999999999999977776533221 12
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhccCcCC---------------CCeEEEEEccchhhHHHHHHHHHHHhcc---
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEV---------------SNAMIVIYEVDKAAEHIQYLIKWIMDGY--- 487 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~---------------~~kVIIIDEID~Ls~~~q~aLlrilEe~--- 487 (629)
.++++||..-.....++..++..+.+.....+.+ ..-||++||+|.|....+..|+.+++.+
T Consensus 207 ~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp 286 (529)
T KOG2227|consen 207 VTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLP 286 (529)
T ss_pred eeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCC
Confidence 3578888432222222233333332211111111 1239999999999887788888877743
Q ss_pred CCCcEEEEEecCCcc---chHHHhhcc----eEeeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHH---ccCCHH
Q 036742 488 TDSCKLILCCEDDVD---IIESVKTHC----KVIKVDPPVTHEIMEVLIQIARKEDFD-LSMTFAAKIATK---AKQNLR 556 (629)
Q Consensus 488 ~~~~~~ILitN~~~~---I~~aLrSR~----~~I~F~ppt~eei~~iL~~i~~kegl~-is~e~L~~Ia~~---s~GDiR 556 (629)
...+.+|.++|..+. +++.|..++ .++.|.||+.++|.+||+..+..+... +-+.++..+|+. ..||+|
T Consensus 287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHH
Confidence 355556667787543 678888866 479999999999999999988765543 334466666665 479999
Q ss_pred HHHHHHHHH
Q 036742 557 KAIMALEAC 565 (629)
Q Consensus 557 ~AInlLq~~ 565 (629)
+|+..++.+
T Consensus 367 kaLdv~R~a 375 (529)
T KOG2227|consen 367 KALDVCRRA 375 (529)
T ss_pred HHHHHHHHH
Confidence 999999843
No 176
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.23 E-value=1.8e-10 Score=126.18 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=106.9
Q ss_pred CcccccHHHHHHHHHHHH-------c---CC--------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 358 NGFICHRHEAQLLKELVV-------D---GN--------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~-------~---g~--------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
+-|+||+++++.|...+. . .. ..++||+||||||||++|+++|+.+. ..+
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-~pf----------- 144 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-VPF----------- 144 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-CCe-----------
Confidence 447999999999887762 1 11 23799999999999999999998863 221
Q ss_pred cccCCcceEEEecc-----cchhhHHHHHHHHHHHHHHhcc-CcCCCCeEEEEEccchhhH--------------HHHHH
Q 036742 420 PVASSAHHVELNVN-----LQANAKYALMGLVKEIRDNLAI-TPEVSNAMIVIYEVDKAAE--------------HIQYL 479 (629)
Q Consensus 420 ~i~sS~~vleInas-----~~~~~k~~l~~~lrei~~~~~~-~~~~~~kVIIIDEID~Ls~--------------~~q~a 479 (629)
..+++. ...+. -....+......... .....+.||||||+|.+.. +.|++
T Consensus 145 --------~~~da~~L~~~gyvG~--d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~ 214 (413)
T TIGR00382 145 --------AIADATTLTEAGYVGE--DVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQA 214 (413)
T ss_pred --------EEechhhccccccccc--cHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHH
Confidence 122221 01111 012223332221111 1122345999999999975 68999
Q ss_pred HHHHHhccC-------------CCcEEEEEecCC---------------------------c------------------
Q 036742 480 IKWIMDGYT-------------DSCKLILCCEDD---------------------------V------------------ 501 (629)
Q Consensus 480 LlrilEe~~-------------~~~~~ILitN~~---------------------------~------------------ 501 (629)
|+++||... .++.+|+|+|-. .
T Consensus 215 LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~ 294 (413)
T TIGR00382 215 LLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPE 294 (413)
T ss_pred HHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHH
Confidence 999997321 122345554430 0
Q ss_pred -----cchHHHhhcc-eEeeccCCCHHHHHHHHHH----HHH-------hcCC--CCCHHHHHHHHHHc
Q 036742 502 -----DIIESVKTHC-KVIKVDPPVTHEIMEVLIQ----IAR-------KEDF--DLSMTFAAKIATKA 551 (629)
Q Consensus 502 -----~I~~aLrSR~-~~I~F~ppt~eei~~iL~~----i~~-------kegl--~is~e~L~~Ia~~s 551 (629)
.+.|.|..|+ .++.|.+++.+++.+|+.. +.. ..++ .++++++++|++.+
T Consensus 295 dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 295 DLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred HHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 0335666777 5688999999999988765 121 1233 56899999999875
No 177
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.21 E-value=6.4e-10 Score=114.82 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=88.9
Q ss_pred EEEEEccchhhHHHHHHHHHHHhccCCCcE-EEEEecC------------CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742 463 MIVIYEVDKAAEHIQYLIKWIMDGYTDSCK-LILCCED------------DVDIIESVKTHCKVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 463 VIIIDEID~Ls~~~q~aLlrilEe~~~~~~-~ILitN~------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL~ 529 (629)
||||||++.|.-+++.+|.+.+|. .-++ +|++||. ++.|+-.|..|.++|.-.||+.+++.++|.
T Consensus 291 VLFIDEvHMLDIEcFsFlNrAlE~--d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~ 368 (454)
T KOG2680|consen 291 VLFIDEVHMLDIECFSFLNRALEN--DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILR 368 (454)
T ss_pred eEEEeeehhhhhHHHHHHHHHhhh--ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHH
Confidence 999999999999999999999985 3444 4455553 345888999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHH-ccCCHHHHHHHHHHHHhc
Q 036742 530 QIARKEDFDLSMTFAAKIATK-AKQNLRKAIMALEACKAL 568 (629)
Q Consensus 530 ~i~~kegl~is~e~L~~Ia~~-s~GDiR~AInlLq~~~~~ 568 (629)
-.|..+.+.+++++++.|... ....+|.+++++..+.+.
T Consensus 369 iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~ 408 (454)
T KOG2680|consen 369 IRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLV 408 (454)
T ss_pred hhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999998876 356899999999776543
No 178
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.20 E-value=1.3e-09 Score=116.43 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=93.0
Q ss_pred CcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742 358 NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN 437 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~ 437 (629)
..++|.++++..+..++..|. |+||.||||||||++|+.+|+.+. .. ++.+.+..+..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~-~~-------------------~~~i~~t~~l~ 81 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALG-LP-------------------FVRIQCTPDLL 81 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhC-CC-------------------eEEEecCCCCC
Confidence 347888888887777776655 799999999999999999999974 33 35555532221
Q ss_pred hHHHHH-HHHHHH---HHHhc-cCcCCCC---eEEEEEccchhhHHHHHHHHHHHhccC------------CCcEEEEEe
Q 036742 438 AKYALM-GLVKEI---RDNLA-ITPEVSN---AMIVIYEVDKAAEHIQYLIKWIMDGYT------------DSCKLILCC 497 (629)
Q Consensus 438 ~k~~l~-~~lrei---~~~~~-~~~~~~~---kVIIIDEID~Ls~~~q~aLlrilEe~~------------~~~~~ILit 497 (629)
...++. ..+... ...+. ..+..-. .|+++|||++..+..+++|+..|++.. ....+|.+.
T Consensus 82 p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~ 161 (329)
T COG0714 82 PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ 161 (329)
T ss_pred HHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc
Confidence 111111 111111 11111 1112222 399999999999999999999998721 122344455
Q ss_pred c-----CCccchHHHhhcc-eEeeccCCCHH
Q 036742 498 E-----DDVDIIESVKTHC-KVIKVDPPVTH 522 (629)
Q Consensus 498 N-----~~~~I~~aLrSR~-~~I~F~ppt~e 522 (629)
| ....+.++++.|| ..+.+..|..+
T Consensus 162 Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 162 NPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred CccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 7 4455899999999 67777777343
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.4e-10 Score=130.83 Aligned_cols=201 Identities=14% Similarity=0.165 Sum_probs=150.1
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle 429 (629)
+.-+-..+|-+||.++.+..+.+.|.+...++-+|.|+||+|||+++..+|..+-...++. ......++.
T Consensus 162 ~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~----------~L~~~~i~s 231 (786)
T COG0542 162 ELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPE----------SLKDKRIYS 231 (786)
T ss_pred HHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCH----------HHcCCEEEE
Confidence 4445667899999999999999999988888899999999999999999999986554321 123333555
Q ss_pred Eecc------cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-----h----HHHHHHHHHHHhccCCCcEEE
Q 036742 430 LNVN------LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-----A----EHIQYLIKWIMDGYTDSCKLI 494 (629)
Q Consensus 430 Inas------~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-----s----~~~q~aLlrilEe~~~~~~~I 494 (629)
++.. ..+| .+++.++.+++...... +.||||||+|.+ + .++.|.|...+.. ...++|
T Consensus 232 LD~g~LvAGakyRG---eFEeRlk~vl~ev~~~~---~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~I 303 (786)
T COG0542 232 LDLGSLVAGAKYRG---EFEERLKAVLKEVEKSK---NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCI 303 (786)
T ss_pred ecHHHHhccccccC---cHHHHHHHHHHHHhcCC---CeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEE
Confidence 5431 2233 34566666666544332 569999999998 1 2366777777763 456677
Q ss_pred EEecCCcc-----chHHHhhcceEeeccCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHccCCH------HHHH
Q 036742 495 LCCEDDVD-----IIESVKTHCKVIKVDPPVTHEIMEVLIQIAR----KEDFDLSMTFAAKIATKAKQNL------RKAI 559 (629)
Q Consensus 495 LitN~~~~-----I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~----kegl~is~e~L~~Ia~~s~GDi------R~AI 559 (629)
.+|+..+. .+++|-+||+.|.+..|+.++...+|+-+.. .+++.++++++.+.+.++...| .+||
T Consensus 304 GATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 77664332 4899999999999999999999999877643 4678899999999999987654 4899
Q ss_pred HHHHHHHhc
Q 036742 560 MALEACKAL 568 (629)
Q Consensus 560 nlLq~~~~~ 568 (629)
.+++.+++.
T Consensus 384 DLiDeA~a~ 392 (786)
T COG0542 384 DLLDEAGAR 392 (786)
T ss_pred HHHHHHHHH
Confidence 999876653
No 180
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.18 E-value=2.3e-10 Score=124.58 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=75.1
Q ss_pred CeEEEEEccchhh------------HHHHHHHHHHHhccC----------CCcEEEEEe----cCCccchHHHhhcc-eE
Q 036742 461 NAMIVIYEVDKAA------------EHIQYLIKWIMDGYT----------DSCKLILCC----EDDVDIIESVKTHC-KV 513 (629)
Q Consensus 461 ~kVIIIDEID~Ls------------~~~q~aLlrilEe~~----------~~~~~ILit----N~~~~I~~aLrSR~-~~ 513 (629)
..||||||||.+. .++|..|++++|... .++.||+.. ..+.+++|.|.-|+ .+
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 327 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIR 327 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 4499999999993 358999999998643 223344432 23566899999999 57
Q ss_pred eeccCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHc--------cCCHHHHHHHHHHH
Q 036742 514 IKVDPPVTHEIMEVLIQ-----------IARKEDF--DLSMTFAAKIATKA--------KQNLRKAIMALEAC 565 (629)
Q Consensus 514 I~F~ppt~eei~~iL~~-----------i~~kegl--~is~e~L~~Ia~~s--------~GDiR~AInlLq~~ 565 (629)
+.+.+++.+++..||.. ....+|+ .++++++..||+.+ +--.|..-.+++..
T Consensus 328 v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~ 400 (441)
T TIGR00390 328 VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL 400 (441)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 89999999999988822 2344554 45899999998775 33456666666654
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=4.1e-10 Score=119.51 Aligned_cols=176 Identities=10% Similarity=0.135 Sum_probs=109.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
.|..=.+++..++....+..++..+. +|||.||||||||++|+.+|..+ +..+ +.+++
T Consensus 40 ~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l-~~~~-------------------~rV~~ 97 (327)
T TIGR01650 40 VPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARL-NWPC-------------------VRVNL 97 (327)
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHH-CCCe-------------------EEEEe
Confidence 34444566777777777777776543 79999999999999999999998 4332 33333
Q ss_pred ccchhhHHHHHHH---HHHHH--HHhcc----CcCCCCeEEEEEccchhhHHHHHHHHHHHhcc--------------CC
Q 036742 433 NLQANAKYALMGL---VKEIR--DNLAI----TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY--------------TD 489 (629)
Q Consensus 433 s~~~~~k~~l~~~---lrei~--~~~~~----~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~--------------~~ 489 (629)
........++... +++-. ..|.. .....+.+||+||+|...++.++.|..++|.. ..
T Consensus 98 ~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp 177 (327)
T TIGR01650 98 DSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHP 177 (327)
T ss_pred cCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCC
Confidence 2111100000000 00000 00000 00123458999999999999999999998831 13
Q ss_pred CcEEEEEecCCc------------cchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 036742 490 SCKLILCCEDDV------------DIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK 550 (629)
Q Consensus 490 ~~~~ILitN~~~------------~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~ 550 (629)
..++|.|+|... .+.++++.|+. ++.+..|+.++-.++|...+....-..++++++++++.
T Consensus 178 ~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 178 AFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred CeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 456788888743 26899999996 46899999999989987654321101134556665544
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.17 E-value=7.9e-10 Score=127.79 Aligned_cols=232 Identities=14% Similarity=0.076 Sum_probs=136.0
Q ss_pred CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh-------CC-CCCC-CCCCccccccccC----
Q 036742 357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-------GD-ACWN-EKWPTQVLVPVAS---- 423 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~-------g~-~~~~-~~~~~~v~~~i~s---- 423 (629)
|.+|+||+.++..|.-.+......+|||.|++|||||++|++|+..+- |. .|.. ..+..|.+|.-..
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 689999999999888888777777899999999999999999999861 00 0000 0111111111111
Q ss_pred --CcceEEEecccchhhHHHHH-HHHHHHHH--Hh----ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742 424 --SAHHVELNVNLQANAKYALM-GLVKEIRD--NL----AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------ 488 (629)
Q Consensus 424 --S~~vleInas~~~~~k~~l~-~~lrei~~--~~----~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------ 488 (629)
...++.+...... ..++. ..+..... .. .......+.|||||||+.|....++.|+..|+...
T Consensus 83 ~~~~pfv~~p~~~t~--~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~ 160 (633)
T TIGR02442 83 QRPVPFVNLPLGATE--DRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVERE 160 (633)
T ss_pred cCCCCeeeCCCCCcH--HHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEEC
Confidence 1223333332110 00000 00111111 00 01111234599999999999999999999998532
Q ss_pred -------CCcEEEEEecCCc-cchHHHhhcce-EeeccCCC-HHHHHHHHHHHHH-------------------------
Q 036742 489 -------DSCKLILCCEDDV-DIIESVKTHCK-VIKVDPPV-THEIMEVLIQIAR------------------------- 533 (629)
Q Consensus 489 -------~~~~~ILitN~~~-~I~~aLrSR~~-~I~F~ppt-~eei~~iL~~i~~------------------------- 533 (629)
..+.+|.++|..+ .+.++|..|+. .+.+..+. .++..+++.+...
T Consensus 161 g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 240 (633)
T TIGR02442 161 GLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIAR 240 (633)
T ss_pred CceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHH
Confidence 2345666666432 47889999994 45555543 3443334332110
Q ss_pred ----hcCCCCCHHHHHHHHHHcc---C-CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742 534 ----KEDFDLSMTFAAKIATKAK---Q-NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 534 ----kegl~is~e~L~~Ia~~s~---G-DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
...+.++++++.+|+..+. - .+|..+.++..+.+.+.--......+.++..++.-+.
T Consensus 241 ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 241 ARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 1236778888888877652 1 4788888888776655544455566666665555444
No 183
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.16 E-value=6.9e-10 Score=125.90 Aligned_cols=199 Identities=14% Similarity=0.165 Sum_probs=131.5
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 351 KHQPSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
+++..++++|+|.....+.+.+.++. ....+|||+|++||||+++|++|....... ...++
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-----------------~~pfv 251 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA-----------------KRPFV 251 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC-----------------CCCeE
Confidence 45556899999998877776666642 233479999999999999999999864211 12378
Q ss_pred EEecccchhhHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------
Q 036742 429 ELNVNLQANAKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT----------- 488 (629)
Q Consensus 429 eInas~~~~~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~----------- 488 (629)
.+||..... . .+. .++......|.. .....+.+|||||||.|....|..|+++++...
T Consensus 252 ~i~c~~~~~-~-~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 329 (534)
T TIGR01817 252 KVNCAALSE-T-LLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLK 329 (534)
T ss_pred EeecCCCCH-H-HHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEe
Confidence 888853321 1 111 111111111111 111234599999999999999999999997532
Q ss_pred CCcEEEEEecCCc-------cchHHHhhcce--EeeccCCC--HHHHHHHHHH----HHHhcC--CCCCHHHHHHHHHHc
Q 036742 489 DSCKLILCCEDDV-------DIIESVKTHCK--VIKVDPPV--THEIMEVLIQ----IARKED--FDLSMTFAAKIATKA 551 (629)
Q Consensus 489 ~~~~~ILitN~~~-------~I~~aLrSR~~--~I~F~ppt--~eei~~iL~~----i~~keg--l~is~e~L~~Ia~~s 551 (629)
.++++|++|+..- .+.+.|..|+. .|.++++. .+++..++.. .+.+.+ +.++++++..|..+.
T Consensus 330 ~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~ 409 (534)
T TIGR01817 330 VDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCK 409 (534)
T ss_pred ecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCC
Confidence 2467888877542 24567777764 46677775 3455444333 333332 568999999998885
Q ss_pred -cCCHHHHHHHHHHHHhc
Q 036742 552 -KQNLRKAIMALEACKAL 568 (629)
Q Consensus 552 -~GDiR~AInlLq~~~~~ 568 (629)
.||+|..-+.++.+...
T Consensus 410 WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 410 WPGNVRELENCLERTATL 427 (534)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 89999999999987654
No 184
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.16 E-value=3.5e-10 Score=123.17 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=75.4
Q ss_pred CeEEEEEccchhh------------HHHHHHHHHHHhccC----------CCcEEEEEe----cCCccchHHHhhcc-eE
Q 036742 461 NAMIVIYEVDKAA------------EHIQYLIKWIMDGYT----------DSCKLILCC----EDDVDIIESVKTHC-KV 513 (629)
Q Consensus 461 ~kVIIIDEID~Ls------------~~~q~aLlrilEe~~----------~~~~~ILit----N~~~~I~~aLrSR~-~~ 513 (629)
..||||||||.+. .++|..|++++|... .++.||+.. ..+.+++|.|.-|+ .+
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 329 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIR 329 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 4599999999993 368999999999643 223333332 23566899999999 56
Q ss_pred eeccCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHc--------cCCHHHHHHHHHHHH
Q 036742 514 IKVDPPVTHEIMEVLIQ-----------IARKEDF--DLSMTFAAKIATKA--------KQNLRKAIMALEACK 566 (629)
Q Consensus 514 I~F~ppt~eei~~iL~~-----------i~~kegl--~is~e~L~~Ia~~s--------~GDiR~AInlLq~~~ 566 (629)
+.+.+++.+++..||.. ....+|+ .++++++..||+.+ +--.|..-.+++.+-
T Consensus 330 v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 330 VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 88999999999988833 2334555 56899999998775 234566666666543
No 185
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.15 E-value=3.7e-10 Score=111.79 Aligned_cols=180 Identities=21% Similarity=0.248 Sum_probs=103.6
Q ss_pred ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhh-
Q 036742 360 FICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA- 438 (629)
Q Consensus 360 IiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~- 438 (629)
++|.+..++.|.+++..+...+++|+||.|+|||++++.++..+...... ++++........
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~-----------------~~y~~~~~~~~~~ 63 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYK-----------------VVYIDFLEESNES 63 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EEC-----------------CCHHCCTTBSHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc-----------------EEEEecccchhhh
Confidence 57889999999999998878899999999999999999999987322110 111111000000
Q ss_pred --HHH---------------------------------HHHHHHHHHHHhccCcCCCCeEEEEEccchhh------HHHH
Q 036742 439 --KYA---------------------------------LMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA------EHIQ 477 (629)
Q Consensus 439 --k~~---------------------------------l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls------~~~q 477 (629)
... ....+..+...+.. .....||||||++.+. ....
T Consensus 64 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~ 141 (234)
T PF01637_consen 64 SLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFL 141 (234)
T ss_dssp HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHH
Confidence 000 00111111111111 1112599999999998 4556
Q ss_pred HHHHHHHhc--cCCCcEEEEEecCCcc------chHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHH
Q 036742 478 YLIKWIMDG--YTDSCKLILCCEDDVD------IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL--SMTFAAKI 547 (629)
Q Consensus 478 ~aLlrilEe--~~~~~~~ILitN~~~~------I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~i--s~e~L~~I 547 (629)
..|..+++. ...+..+|+++..... -..++..|+..+.+.+++.++..+.+....... ..+ +++.+..+
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i 220 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEI 220 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence 677777765 2344455555543221 123466778889999999999999999877665 544 89999999
Q ss_pred HHHccCCHHHHH
Q 036742 548 ATKAKQNLRKAI 559 (629)
Q Consensus 548 a~~s~GDiR~AI 559 (629)
...++|.++.+.
T Consensus 221 ~~~~gG~P~~l~ 232 (234)
T PF01637_consen 221 YSLTGGNPRYLQ 232 (234)
T ss_dssp HHHHTT-HHHHH
T ss_pred HHHhCCCHHHHh
Confidence 999999988754
No 186
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.14 E-value=4.4e-09 Score=118.76 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=127.7
Q ss_pred CcccccHHHHHHHHHHHH----c-CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 358 NGFICHRHEAQLLKELVV----D-GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~----~-g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
+-+.+.+.....|..++. . +....++++|-||||||++++.+.++|....-.+ -+....+++||+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~----------e~p~f~yveINg 465 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQK----------ELPKFDYVEING 465 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhc----------CCCCccEEEEcc
Confidence 445566666666666654 3 3334789999999999999999999885211000 011223788988
Q ss_pred ccchhhHHHHHHHHHH--------------HHHHhccC-cCCCCeEEEEEccchhhHHHHHHHHHHHhccC---CCcEEE
Q 036742 433 NLQANAKYALMGLVKE--------------IRDNLAIT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT---DSCKLI 494 (629)
Q Consensus 433 s~~~~~k~~l~~~lre--------------i~~~~~~~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~---~~~~~I 494 (629)
....+..++...+... +...|... ......||+|||.|.|-..-|..|+-+++.+. ....||
T Consensus 466 m~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 466 LRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred eeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 5332222221111111 11112211 12233499999999998888888888888654 333455
Q ss_pred EEecCCcc----chHHHhhcc--eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---ccCCHHHHHHHHHHH
Q 036742 495 LCCEDDVD----IIESVKTHC--KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK---AKQNLRKAIMALEAC 565 (629)
Q Consensus 495 LitN~~~~----I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~---s~GDiR~AInlLq~~ 565 (629)
.++|..+. ++..+-||+ ..+.|.||+..|+.+++...+... ..+..++++.+++. ..||.|+|++++..+
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred EecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 56665443 344566665 689999999999999998766543 34566666666544 579999999999876
Q ss_pred HhcC
Q 036742 566 KALN 569 (629)
Q Consensus 566 ~~~~ 569 (629)
...+
T Consensus 625 ~Eia 628 (767)
T KOG1514|consen 625 AEIA 628 (767)
T ss_pred HHHh
Confidence 6543
No 187
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=4.8e-10 Score=110.72 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=102.5
Q ss_pred HHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceE----------
Q 036742 444 GLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKV---------- 513 (629)
Q Consensus 444 ~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~---------- 513 (629)
+.++++.+.....+. .++ +|||++|.|+..++|+|++++|+++.++.||++|+.+..++++|+|||+.
T Consensus 40 d~iReii~~~~~~~~-~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~ 117 (206)
T PRK08485 40 EDAKEVIAEAYIAES-EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVK 117 (206)
T ss_pred HHHHHHHHHHhhCCC-CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheecccccccccc
Confidence 567777766555543 334 46889999999999999999999999999999999999999999999986
Q ss_pred ---eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742 514 ---IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565 (629)
Q Consensus 514 ---I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~ 565 (629)
+.|.+++.+++...|.. +.++++...++.+..|+..+.|.+|.++.+.+..
T Consensus 118 ~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~ 171 (206)
T PRK08485 118 PLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEE 171 (206)
T ss_pred ccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence 77899999999999998 6788887788889999999999999998777653
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.1e-10 Score=125.53 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=106.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE 458 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~ 458 (629)
+.+||||||||||||.+||.|.+.|+.... .++..+.++ +...+.. ..-+..++.+.-+.+...+.
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNAreP-----------KIVNGPeIL--~KYVGeS-E~NvR~LFaDAEeE~r~~g~ 321 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAREP-----------KIVNGPEIL--NKYVGES-EENVRKLFADAEEEQRRLGA 321 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCCC-----------cccCcHHHH--HHhhccc-HHHHHHHHHhHHHHHHhhCc
Confidence 447999999999999999999999865432 122222221 1111111 11233445554444444444
Q ss_pred CCCe-EEEEEccchh-------------hHHHHHHHHHHHhc--cCCCcEEEEEecCCccchHHHhh--cce-EeeccCC
Q 036742 459 VSNA-MIVIYEVDKA-------------AEHIQYLIKWIMDG--YTDSCKLILCCEDDVDIIESVKT--HCK-VIKVDPP 519 (629)
Q Consensus 459 ~~~k-VIIIDEID~L-------------s~~~q~aLlrilEe--~~~~~~~ILitN~~~~I~~aLrS--R~~-~I~F~pp 519 (629)
.++- |||+||||.+ ...+.+.|+.-|+. -..++.+|-.||+.+.|+++|.+ |+. .+++.-|
T Consensus 322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLP 401 (744)
T KOG0741|consen 322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLP 401 (744)
T ss_pred cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCC
Confidence 4433 9999999999 23567888887773 34677888899999999999998 443 4777777
Q ss_pred CHHHHHHHHHHHHH---hcCCCCC-HHHHHHHHHHcc----CCHHHHHHHHHHH
Q 036742 520 VTHEIMEVLIQIAR---KEDFDLS-MTFAAKIATKAK----QNLRKAIMALEAC 565 (629)
Q Consensus 520 t~eei~~iL~~i~~---kegl~is-~e~L~~Ia~~s~----GDiR~AInlLq~~ 565 (629)
+..-..+||+-+.. ..++ ++ +-.++.||..+. ..+...+...+..
T Consensus 402 DE~gRlQIl~IHT~rMre~~~-l~~dVdl~elA~lTKNfSGAEleglVksA~S~ 454 (744)
T KOG0741|consen 402 DEKGRLQILKIHTKRMRENNK-LSADVDLKELAALTKNFSGAELEGLVKSAQSF 454 (744)
T ss_pred CccCceEEEEhhhhhhhhcCC-CCCCcCHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 77766666654322 2222 33 334777777654 3344444444443
No 189
>PHA02244 ATPase-like protein
Probab=99.06 E-value=7.8e-10 Score=118.84 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhH-HHHH--
Q 036742 367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAK-YALM-- 443 (629)
Q Consensus 367 ~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k-~~l~-- 443 (629)
...+..|+..+. ++||+||||||||++|+++|..+ +.. ++.++.......- ..+.
T Consensus 109 ~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l-g~p-------------------fv~In~l~d~~~L~G~i~~~ 166 (383)
T PHA02244 109 TADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL-DLD-------------------FYFMNAIMDEFELKGFIDAN 166 (383)
T ss_pred HHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh-CCC-------------------EEEEecChHHHhhccccccc
Confidence 345566666654 69999999999999999999986 332 2233321000000 0000
Q ss_pred HHHH--HHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc-----------cCCCcEEEEEecCC----------
Q 036742 444 GLVK--EIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG-----------YTDSCKLILCCEDD---------- 500 (629)
Q Consensus 444 ~~lr--ei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe-----------~~~~~~~ILitN~~---------- 500 (629)
..+. .+... ...+.+|||||++.+.+.++..|..+++. ...++++|+++|..
T Consensus 167 g~~~dgpLl~A-----~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G 241 (383)
T PHA02244 167 GKFHETPFYEA-----FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVA 241 (383)
T ss_pred ccccchHHHHH-----hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCC
Confidence 0000 00010 12345999999999999999999999862 13677899999973
Q ss_pred -ccchHHHhhcceEeeccCCCHHH
Q 036742 501 -VDIIESVKTHCKVIKVDPPVTHE 523 (629)
Q Consensus 501 -~~I~~aLrSR~~~I~F~ppt~ee 523 (629)
..+.+++++||..+.|..|+..|
T Consensus 242 ~k~L~~AllDRFv~I~~dyp~~~E 265 (383)
T PHA02244 242 RNKIDGATLDRFAPIEFDYDEKIE 265 (383)
T ss_pred CcccCHHHHhhcEEeeCCCCcHHH
Confidence 34789999999999999887433
No 190
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.06 E-value=4.6e-10 Score=104.23 Aligned_cols=107 Identities=15% Similarity=0.319 Sum_probs=68.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHH---HHhccC-
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIR---DNLAIT- 456 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~---~~~~~~- 456 (629)
+|||+||||||||++|+.+|+.+ +.. ++.+++....... +++.... ..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-~~~-------------------~~~i~~~~~~~~~----dl~g~~~~~~~~~~~~~ 56 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-GRP-------------------VIRINCSSDTTEE----DLIGSYDPSNGQFEFKD 56 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-TCE-------------------EEEEE-TTTSTHH----HHHCEEET-TTTTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-hcc-------------------eEEEEeccccccc----cceeeeeeccccccccc
Confidence 58999999999999999999997 443 3444443222211 1111000 000000
Q ss_pred -c----CCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------C------CcEEEEEecCCc----cchHHHh
Q 036742 457 -P----EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------D------SCKLILCCEDDV----DIIESVK 508 (629)
Q Consensus 457 -~----~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~------~~~~ILitN~~~----~I~~aLr 508 (629)
. ...+.|+||||++...+++++.|..+++... . +..||+++|... .+.++|+
T Consensus 57 ~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~ 136 (139)
T PF07728_consen 57 GPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL 136 (139)
T ss_dssp -CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred ccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence 0 0124599999999999999999999987421 1 378899999888 6899999
Q ss_pred hcc
Q 036742 509 THC 511 (629)
Q Consensus 509 SR~ 511 (629)
+||
T Consensus 137 ~Rf 139 (139)
T PF07728_consen 137 DRF 139 (139)
T ss_dssp TT-
T ss_pred hhC
Confidence 997
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.06 E-value=5.4e-09 Score=111.83 Aligned_cols=190 Identities=17% Similarity=0.127 Sum_probs=120.4
Q ss_pred ccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742 360 FICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN 437 (629)
Q Consensus 360 IiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~ 437 (629)
|+|.....+.+.+.+. .....+|||+|++||||+++|++|....... ...++.+||.....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-----------------~~pfv~vnc~~~~~ 63 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW-----------------QGPLVKLNCAALSE 63 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc-----------------CCCeEEEeCCCCCh
Confidence 3455444444444433 1123369999999999999999998753211 12377888853221
Q ss_pred hHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEe
Q 036742 438 AKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCC 497 (629)
Q Consensus 438 ~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILit 497 (629)
..+. .++......|.. .....+.+|||||||.|....|..|+++++... .++++|+++
T Consensus 64 --~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 64 --NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT 141 (329)
T ss_pred --HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence 1111 122211111111 111234599999999999999999999997532 446888888
Q ss_pred cCCc-------cchHHHhhcce--EeeccCCC--HHHHHHHH----HHHHHhcC----CCCCHHHHHHHHHHc-cCCHHH
Q 036742 498 EDDV-------DIIESVKTHCK--VIKVDPPV--THEIMEVL----IQIARKED----FDLSMTFAAKIATKA-KQNLRK 557 (629)
Q Consensus 498 N~~~-------~I~~aLrSR~~--~I~F~ppt--~eei~~iL----~~i~~keg----l~is~e~L~~Ia~~s-~GDiR~ 557 (629)
+..- .+.+.|..|+. .|.++|+- .+++..++ .+.+.+.+ ..++++++..|.... .||+|.
T Consensus 142 ~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrE 221 (329)
T TIGR02974 142 NADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRE 221 (329)
T ss_pred hhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHH
Confidence 7542 35677888884 56677665 34444433 33444433 357999999998886 799999
Q ss_pred HHHHHHHHHhc
Q 036742 558 AIMALEACKAL 568 (629)
Q Consensus 558 AInlLq~~~~~ 568 (629)
.-|.++.+...
T Consensus 222 L~n~i~~~~~~ 232 (329)
T TIGR02974 222 LKNVVERSVYR 232 (329)
T ss_pred HHHHHHHHHHh
Confidence 99999877654
No 192
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.05 E-value=2.7e-09 Score=117.37 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=96.0
Q ss_pred CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc--cCCcceEEEeccc
Q 036742 357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV--ASSAHHVELNVNL 434 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i--~sS~~vleInas~ 434 (629)
++++++.++.++.+...+..+ .+++|+||||||||++|+.+|..+.+...... ...+.+.. .-...+--+.+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~--v~~VtFHpsySYeDFI~G~rP~- 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQR--VNMVQFHQSYSYEDFIQGYRPN- 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccce--eeEEeecccccHHHHhcccCCC-
Confidence 577888888888888888764 48999999999999999999998754321100 00000000 000000000000
Q ss_pred chhhHHHH-HHHHHHHHHHhccCcCCCCeEEEEEccchhhH-HHHHHHHHHHhc----------------------cCCC
Q 036742 435 QANAKYAL-MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-HIQYLIKWIMDG----------------------YTDS 490 (629)
Q Consensus 435 ~~~~k~~l-~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-~~q~aLlrilEe----------------------~~~~ 490 (629)
+..... ...+.++...... ....+.|||||||++... .+...+..++|. .+.+
T Consensus 249 --~vgy~~~~G~f~~~~~~A~~-~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~N 325 (459)
T PRK11331 249 --GVGFRRKDGIFYNFCQQAKE-QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPEN 325 (459)
T ss_pred --CCCeEecCchHHHHHHHHHh-cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCC
Confidence 000000 0112222222111 122456999999999864 345566665552 1245
Q ss_pred cEEEEEecCCc----cchHHHhhcceEeeccC-CCHHHHHHHHH
Q 036742 491 CKLILCCEDDV----DIIESVKTHCKVIKVDP-PVTHEIMEVLI 529 (629)
Q Consensus 491 ~~~ILitN~~~----~I~~aLrSR~~~I~F~p-pt~eei~~iL~ 529 (629)
+.||.|+|..+ .++.+|++|+..+++.+ ++...+...+.
T Consensus 326 l~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 326 VYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred eEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 56888888876 48999999999998876 55555555543
No 193
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.02 E-value=4.9e-09 Score=113.90 Aligned_cols=200 Identities=16% Similarity=0.183 Sum_probs=130.1
Q ss_pred CCCCCcccccHHHHHHHHHHHHcCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 354 PSSLNGFICHRHEAQLLKELVVDGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
...++++||.....+.+.+-++.-. --++|+.|++||||+.+|++|....... ..+.++.+|
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~----------------~~~PFI~~N 137 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR----------------AEAPFIAFN 137 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc----------------cCCCEEEEE
Confidence 3457899998876666666665421 1279999999999999999999432110 234488999
Q ss_pred cccchhhHHHHHHHHHHHHHHhccCcC--------CCCeEEEEEccchhhHHHHHHHHHHHhc-----------cCCCcE
Q 036742 432 VNLQANAKYALMGLVKEIRDNLAITPE--------VSNAMIVIYEVDKAAEHIQYLIKWIMDG-----------YTDSCK 492 (629)
Q Consensus 432 as~~~~~k~~l~~~lrei~~~~~~~~~--------~~~kVIIIDEID~Ls~~~q~aLlrilEe-----------~~~~~~ 492 (629)
|......-.. .++|.-....|..... ..+++||+|||..|....|..|++++|+ ...+++
T Consensus 138 Ca~~~en~~~-~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 138 CAAYSENLQE-AELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred HHHhCcCHHH-HHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCce
Confidence 9543221111 1233333333333222 1245999999999999999999999996 236677
Q ss_pred EEEEecCC--ccchH--HHhhcceE--eeccCCCHH--HHH----HHHHHHHHhcCCCC---CHHHHHHHHHH-ccCCHH
Q 036742 493 LILCCEDD--VDIIE--SVKTHCKV--IKVDPPVTH--EIM----EVLIQIARKEDFDL---SMTFAAKIATK-AKQNLR 556 (629)
Q Consensus 493 ~ILitN~~--~~I~~--aLrSR~~~--I~F~ppt~e--ei~----~iL~~i~~kegl~i---s~e~L~~Ia~~-s~GDiR 556 (629)
+|++|+.. ..+.. .|.+|+.. |.++++-.. ++. -.|...|.+.+..+ +++++..+... ..||+|
T Consensus 217 li~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNir 296 (403)
T COG1221 217 LICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIR 296 (403)
T ss_pred eeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHH
Confidence 88887753 33666 77777654 555555432 222 23455577766654 34556665544 689999
Q ss_pred HHHHHHHHHHhcCC
Q 036742 557 KAIMALEACKALNY 570 (629)
Q Consensus 557 ~AInlLq~~~~~~~ 570 (629)
...|+++.+++...
T Consensus 297 ELkN~Ve~~~~~~~ 310 (403)
T COG1221 297 ELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998777654
No 194
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.3e-08 Score=114.95 Aligned_cols=240 Identities=15% Similarity=0.156 Sum_probs=142.1
Q ss_pred CcccccHHHHHHHHHHH-HcC-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742 358 NGFICHRHEAQLLKELV-VDG-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ 435 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L-~~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~ 435 (629)
.|++--+.+++...+.. .-. ..++|||+||+|||||.||+++++++..... +++..+.|+.-
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~----------------~hv~~v~Cs~l 471 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLI----------------AHVEIVSCSTL 471 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccc----------------eEEEEEechhc
Confidence 55554454444433321 111 1247999999999999999999999753322 23555666543
Q ss_pred hhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHHHHhccC---CCcEEEEEe
Q 036742 436 ANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKWIMDGYT---DSCKLILCC 497 (629)
Q Consensus 436 ~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlrilEe~~---~~~~~ILit 497 (629)
.+.+ .-+...+.++ |...-...+.||++|++|.|.. ....+|...+..|. ..+.||.+.
T Consensus 472 ~~~~~e~iQk~l~~v---fse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~ 548 (952)
T KOG0735|consen 472 DGSSLEKIQKFLNNV---FSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG 548 (952)
T ss_pred cchhHHHHHHHHHHH---HHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec
Confidence 3322 1222333332 2223334456999999999933 11233445444443 334567777
Q ss_pred cCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH-HHHHhcCC--C
Q 036742 498 EDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL-EACKALNY--P 571 (629)
Q Consensus 498 N~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL-q~~~~~~~--~ 571 (629)
+....|.+.|-+- + .++.+++|...+..+||..++.+....+..+.++.++..+.|..-.-+.++ +.+.-.++ .
T Consensus 549 qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~ler 628 (952)
T KOG0735|consen 549 QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLER 628 (952)
T ss_pred hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Confidence 7777787777653 3 368899999999999999999987777778889999999998543333322 22211111 1
Q ss_pred CCCC--CCCchhHHHHHHHHHHHHhcC-----------CChHHHHHHHHHHHHHHHcC
Q 036742 572 FADD--QPIPLGWEEVLIELAAEILAD-----------PSPKRLVMVRGKIQKLLAEF 616 (629)
Q Consensus 572 ~~~~--~~~~~~~ek~l~ei~~~il~~-----------~s~~~L~~ir~kly~lL~~~ 616 (629)
+..+ ..+..++.+.+..++-..+.+ ..+..+.++++.+.+.|.--
T Consensus 629 is~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P 686 (952)
T KOG0735|consen 629 ISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWP 686 (952)
T ss_pred hccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhcc
Confidence 1222 122256666666554333222 24556677777777766543
No 195
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.00 E-value=1.3e-08 Score=108.86 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=124.3
Q ss_pred CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
.+++++|.......+.+.+.. ....+|||+|++||||+++|++|...... ....++.++|.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-----------------~~~pfv~v~c~ 66 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-----------------WQGPFISLNCA 66 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-----------------cCCCeEEEeCC
Confidence 357899987766666555541 22336999999999999999998864211 11237788885
Q ss_pred cchhhHHHHHHHHHHHHHHhc--------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEE
Q 036742 434 LQANAKYALMGLVKEIRDNLA--------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLI 494 (629)
Q Consensus 434 ~~~~~k~~l~~~lrei~~~~~--------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~I 494 (629)
.... ..+-..++......+. ......+.+|||||||.|....|..|..+++... .+++||
T Consensus 67 ~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI 145 (326)
T PRK11608 67 ALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV 145 (326)
T ss_pred CCCH-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 4221 1111112211111110 1112234599999999999999999999997432 246788
Q ss_pred EEecCC-------ccchHHHhhcce--EeeccCCCH--HHHHHH----HHHHHHhcC----CCCCHHHHHHHHHHc-cCC
Q 036742 495 LCCEDD-------VDIIESVKTHCK--VIKVDPPVT--HEIMEV----LIQIARKED----FDLSMTFAAKIATKA-KQN 554 (629)
Q Consensus 495 LitN~~-------~~I~~aLrSR~~--~I~F~ppt~--eei~~i----L~~i~~keg----l~is~e~L~~Ia~~s-~GD 554 (629)
++++.. ..+.+.|..|+. .|.++|+-. +++..+ |...+.+.+ ..++++++..|.... .||
T Consensus 146 ~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGN 225 (326)
T PRK11608 146 CATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGN 225 (326)
T ss_pred EeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcH
Confidence 887753 235677888874 566776653 334333 333344433 257899999988774 699
Q ss_pred HHHHHHHHHHHHhc
Q 036742 555 LRKAIMALEACKAL 568 (629)
Q Consensus 555 iR~AInlLq~~~~~ 568 (629)
+|..-+.++.+...
T Consensus 226 vrEL~~vl~~a~~~ 239 (326)
T PRK11608 226 IRELKNVVERSVYR 239 (326)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999986653
No 196
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.99 E-value=1.1e-08 Score=115.44 Aligned_cols=154 Identities=15% Similarity=0.164 Sum_probs=95.7
Q ss_pred CcccccHHHHHHHHHHHHcCCCC------------eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 358 NGFICHRHEAQLLKELVVDGNCP------------HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~~p------------~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
-+|.|++.++..|.-.+-.|..+ |+||+|+||+|||++|+++++......+ . .....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~-~----------~~~~~ 271 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVY-T----------TGKGS 271 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceE-c----------CCCCC
Confidence 46889999887777666554311 8999999999999999999986421111 0 00000
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhc----cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLA----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------- 488 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~----~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------- 488 (629)
....+.+...+. . ....+. ......+.+++|||+|.+....+.+|+..||...
T Consensus 272 ~~~~l~~~~~~~-------~---~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 272 SAVGLTAAVTRD-------P---ETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CcCCccccceEc-------c---CcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 000000000000 0 000010 0111234599999999999999999999997532
Q ss_pred CCcEEEEEecCCc-------------cchHHHhhcc-eE-eeccCCCHHHHHHHHHHHH
Q 036742 489 DSCKLILCCEDDV-------------DIIESVKTHC-KV-IKVDPPVTHEIMEVLIQIA 532 (629)
Q Consensus 489 ~~~~~ILitN~~~-------------~I~~aLrSR~-~~-I~F~ppt~eei~~iL~~i~ 532 (629)
..+.+|.++|... .+.+++.+|| ++ +....++.+.-.+++.+++
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 4567888888642 4789999999 54 4446677766666666654
No 197
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.98 E-value=1.4e-08 Score=117.53 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=124.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 354 PSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
..+|++++|.......+.+.++. ....+|||+|++||||+++|++|....... ...++.+|
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-----------------~~pfv~vn 383 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-----------------AGPYIAVN 383 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-----------------CCCeEEEE
Confidence 34789999987766655555541 222359999999999999999998764211 12378888
Q ss_pred cccchhhHHHHHHHHHHHHHHh-----ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEE
Q 036742 432 VNLQANAKYALMGLVKEIRDNL-----AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLIL 495 (629)
Q Consensus 432 as~~~~~k~~l~~~lrei~~~~-----~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~IL 495 (629)
|..... ..+..+++....... .......+.+||||||+.|....|..|+++++... .++++|+
T Consensus 384 c~~~~~-~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 462 (638)
T PRK11388 384 CQLYPD-EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (638)
T ss_pred CCCCCh-HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEE
Confidence 853221 101112222110000 00011234599999999999999999999997532 1467888
Q ss_pred EecCCc-------cchHHHhhcce--EeeccCCCH--HHHHHHHHHH----HHhc--CCCCCHHHHHHHHHHc-cCCHHH
Q 036742 496 CCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIMEVLIQI----ARKE--DFDLSMTFAAKIATKA-KQNLRK 557 (629)
Q Consensus 496 itN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~iL~~i----~~ke--gl~is~e~L~~Ia~~s-~GDiR~ 557 (629)
+|+..- .+.+.|..|+. .|.++|+-. +++..++..+ +.+. .+.++++++..|.... .||+|.
T Consensus 463 ~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvre 542 (638)
T PRK11388 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFE 542 (638)
T ss_pred eccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHH
Confidence 887542 24455666654 455666554 2344333333 3232 2468999999999887 799999
Q ss_pred HHHHHHHHHhc
Q 036742 558 AIMALEACKAL 568 (629)
Q Consensus 558 AInlLq~~~~~ 568 (629)
..|.++.+...
T Consensus 543 L~~~l~~~~~~ 553 (638)
T PRK11388 543 LRSVIENLALS 553 (638)
T ss_pred HHHHHHHHHHh
Confidence 99999986654
No 198
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.98 E-value=2.2e-08 Score=115.24 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=71.5
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccC---------------------CCcEEEEEecCC--ccchHHHhhcce----Ee
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYT---------------------DSCKLILCCEDD--VDIIESVKTHCK----VI 514 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~---------------------~~~~~ILitN~~--~~I~~aLrSR~~----~I 514 (629)
.+|||||++.|....|..|++.++... -.+++|+++|.. ..++++|++|+. .+
T Consensus 219 GtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v 298 (608)
T TIGR00764 219 GVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYEV 298 (608)
T ss_pred CEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEEE
Confidence 499999999999999999999986321 245678888754 458999999986 24
Q ss_pred ecc---CCCHHHH---HHHHHHHHHhcC--CCCCHHHHHHHHHHcc----------CCHHHHHHHHHHH
Q 036742 515 KVD---PPVTHEI---MEVLIQIARKED--FDLSMTFAAKIATKAK----------QNLRKAIMALEAC 565 (629)
Q Consensus 515 ~F~---ppt~eei---~~iL~~i~~keg--l~is~e~L~~Ia~~s~----------GDiR~AInlLq~~ 565 (629)
.|. +.+.+.. ...+.+.+.+.| ..++++++..|++... .+.|..-+++..+
T Consensus 299 ~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 299 YMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred EeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 443 2334433 445555555553 3578999988875422 3467777777765
No 199
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.97 E-value=8.7e-10 Score=107.34 Aligned_cols=105 Identities=19% Similarity=0.294 Sum_probs=68.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHh-CCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhcc-Cc
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIY-GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI-TP 457 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~-g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~-~~ 457 (629)
..+||.||+|||||.+|+++|+.++ +... .++.++++..... ......+......... ..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~-----------------~~~~~d~s~~~~~-~~~~~~~~~l~~~~~~~v~ 65 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSER-----------------PLIRIDMSEYSEG-DDVESSVSKLLGSPPGYVG 65 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCC-----------------EEEEEEGGGHCSH-HHCSCHCHHHHHHTTCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCcc-----------------chHHHhhhccccc-chHHhhhhhhhhcccceee
Confidence 4789999999999999999999997 3321 2677777533220 0000111111111100 00
Q ss_pred CCCCeEEEEEccchhhH-----------HHHHHHHHHHhccC-----------CCcEEEEEecCCcc
Q 036742 458 EVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGYT-----------DSCKLILCCEDDVD 502 (629)
Q Consensus 458 ~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~~-----------~~~~~ILitN~~~~ 502 (629)
.....||||||||++.+ ++++.|++++|... .++.||+|+|.-..
T Consensus 66 ~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 66 AEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp HHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred ccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 11123999999999999 99999999998532 56678999987554
No 200
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.97 E-value=3.2e-08 Score=102.36 Aligned_cols=235 Identities=15% Similarity=0.201 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHH
Q 036742 364 RHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA 441 (629)
Q Consensus 364 e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~ 441 (629)
+..++.|.++|.. .....+.|+|++|+|||+||..+++.......+. .++.++.........+
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~---------------~v~wv~~~~~~~~~~~ 66 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD---------------GVIWVSLSKNPSLEQL 66 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT---------------EEEEEEEES-SCCHHH
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc---------------cccccccccccccccc
Confidence 5567788888876 4555788999999999999999998732111110 1344444322222222
Q ss_pred HHHHHHHHHHHhccC----------------cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchH
Q 036742 442 LMGLVKEIRDNLAIT----------------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIE 505 (629)
Q Consensus 442 l~~~lrei~~~~~~~----------------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~ 505 (629)
+..+++.+....... -...+.+||||+++... ....+...+-....++.||+||.... +..
T Consensus 67 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~ 143 (287)
T PF00931_consen 67 LEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAG 143 (287)
T ss_dssp HHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGT
T ss_pred cccccccccccccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccc-ccc
Confidence 222222221110000 01225599999998876 22223333333345788888887643 333
Q ss_pred HHhhcceEeeccCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHccCCHHHHHHHH-HHHHhcCCCCCCCCCCchh
Q 036742 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKED---FDLSMTFAAKIATKAKQNLRKAIMAL-EACKALNYPFADDQPIPLG 581 (629)
Q Consensus 506 aLrSR~~~I~F~ppt~eei~~iL~~i~~keg---l~is~e~L~~Ia~~s~GDiR~AInlL-q~~~~~~~~~~~~~~~~~~ 581 (629)
.+......+.+.+++.++..+.+...+.... ....++....|++.|+|.+ -||.++ ..+.... ....
T Consensus 144 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lal~~~a~~l~~~~--------~~~~ 214 (287)
T PF00931_consen 144 SLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP-LALKLIASYLRSKS--------TVDE 214 (287)
T ss_dssp THHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H-HHHHHHHHHHHHHH--------SSSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc--------cccc
Confidence 3333367899999999999999998875443 1122456789999998854 444444 3332211 2256
Q ss_pred HHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 582 WEEVLIELAAEILADP-SPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 582 ~ek~l~ei~~~il~~~-s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
|+.++..+........ ....+......-|+.|.. ..+..|..|+
T Consensus 215 w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~f~~L~ 259 (287)
T PF00931_consen 215 WEEALEELENSLRESRDYDRSVFSALELSYDSLPD--ELRRCFLYLS 259 (287)
T ss_dssp HHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT--CCHHHHHHGG
T ss_pred cccccccccccccccccccccccccceechhcCCc--cHHHHHhhCc
Confidence 8888877766553322 346666666666666665 3444555554
No 201
>PRK12377 putative replication protein; Provisional
Probab=98.96 E-value=9.8e-09 Score=105.69 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=78.7
Q ss_pred hccCCCCCCccc----ccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 350 DKHQPSSLNGFI----CHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 350 eKyrP~tfddIi----G~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
..+.-.+|+.+. |+..++...+.++.. ....+++|+||||||||+||.+||+++...+.
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~--------------- 130 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR--------------- 130 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCC---------------
Confidence 556677899886 333355555544431 22357999999999999999999999853322
Q ss_pred CcceEEEecccchh-hHHHHH--HHHHHHHHHhccCcCCCCeEEEEEccc--hhhHHHHHHHHHHHhc-cCCCcEEEEEe
Q 036742 424 SAHHVELNVNLQAN-AKYALM--GLVKEIRDNLAITPEVSNAMIVIYEVD--KAAEHIQYLIKWIMDG-YTDSCKLILCC 497 (629)
Q Consensus 424 S~~vleInas~~~~-~k~~l~--~~lrei~~~~~~~~~~~~kVIIIDEID--~Ls~~~q~aLlrilEe-~~~~~~~ILit 497 (629)
.++.+...+... .+.... ....++...+ ....||||||++ .++...+..|..+++. +....++|+|+
T Consensus 131 --~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l-----~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitS 203 (248)
T PRK12377 131 --SVIVVTVPDVMSRLHESYDNGQSGEKFLQEL-----CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLT 203 (248)
T ss_pred --CeEEEEHHHHHHHHHHHHhccchHHHHHHHh-----cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 144444421100 000000 0011111111 123499999995 4577788889999884 45568899999
Q ss_pred cCCc
Q 036742 498 EDDV 501 (629)
Q Consensus 498 N~~~ 501 (629)
|...
T Consensus 204 Nl~~ 207 (248)
T PRK12377 204 NLNH 207 (248)
T ss_pred CCCH
Confidence 9753
No 202
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.95 E-value=1.3e-08 Score=115.26 Aligned_cols=197 Identities=14% Similarity=0.170 Sum_probs=126.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 353 QPSSLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
...+|++++|.....+.+.+.++ ......|||+|++||||+++|+++-...... ...++.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~-----------------~~pfv~i 261 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG-----------------KKPFLAL 261 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC-----------------CCCeEEe
Confidence 45689999998776555554443 2223469999999999999999976542111 1236788
Q ss_pred ecccchhhHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CC
Q 036742 431 NVNLQANAKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DS 490 (629)
Q Consensus 431 nas~~~~~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~ 490 (629)
||..... ..+. +++......|.. .....+..|||||||.|+...|..|+++++... .+
T Consensus 262 nca~~~~--~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 262 NCASIPD--DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred ccccCCH--HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 8854321 1111 112111111110 001224589999999999999999999997531 24
Q ss_pred cEEEEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHH----HHHHHHHhcCC---CCCHHHHHHHHHH-c
Q 036742 491 CKLILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIME----VLIQIARKEDF---DLSMTFAAKIATK-A 551 (629)
Q Consensus 491 ~~~ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~----iL~~i~~kegl---~is~e~L~~Ia~~-s 551 (629)
++||++|+..- .+.+.|..|+. .+.++|+.. +++.. +|.+.+.+.+. .++++++..|... .
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~W 419 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGW 419 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCC
Confidence 57888776542 24567888864 566666654 23332 34455555543 6899999999888 7
Q ss_pred cCCHHHHHHHHHHHHhc
Q 036742 552 KQNLRKAIMALEACKAL 568 (629)
Q Consensus 552 ~GDiR~AInlLq~~~~~ 568 (629)
.||+|+.-|.++.+...
T Consensus 420 PGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 420 PGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 89999999999876653
No 203
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.94 E-value=1.9e-08 Score=113.87 Aligned_cols=203 Identities=13% Similarity=0.139 Sum_probs=125.0
Q ss_pred CCCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 355 SSLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
.+|++|+|.....+.+.+.+. .....+|||+|++||||+++|++|-..+.-.... ........++.+||
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~---------~S~r~~~pfv~inC 286 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDA---------RQGKKSHPFVAVNC 286 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccc---------cCccCCCCeEEeec
Confidence 368999999888877777765 2233479999999999999999998762110000 00112334788888
Q ss_pred ccchhhHHHHH-HHHHHHHHHhccCc---------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCc
Q 036742 433 NLQANAKYALM-GLVKEIRDNLAITP---------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSC 491 (629)
Q Consensus 433 s~~~~~k~~l~-~~lrei~~~~~~~~---------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~ 491 (629)
..... ..+. +++......|.... ...+..||||||+.|....|..|++++++.. .++
T Consensus 287 aal~e--~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dv 364 (538)
T PRK15424 287 GAIAE--SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 364 (538)
T ss_pred ccCCh--hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccce
Confidence 53221 1111 12221111111110 1234599999999999999999999997532 345
Q ss_pred EEEEEecCCcc-------chHHHhhcce--EeeccCCCH--HHHHHHHHH----HHHhcCCCCCHHHHH-------HHHH
Q 036742 492 KLILCCEDDVD-------IIESVKTHCK--VIKVDPPVT--HEIMEVLIQ----IARKEDFDLSMTFAA-------KIAT 549 (629)
Q Consensus 492 ~~ILitN~~~~-------I~~aLrSR~~--~I~F~ppt~--eei~~iL~~----i~~kegl~is~e~L~-------~Ia~ 549 (629)
++|++|+..-. +.+.|..|+. .|.++|+-. +++..++.. .+.+.+..++++++. .|..
T Consensus 365 RiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~ 444 (538)
T PRK15424 365 RVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLH 444 (538)
T ss_pred EEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHh
Confidence 78888875421 3345666664 455666543 344433333 334456678877763 2322
Q ss_pred H-ccCCHHHHHHHHHHHHhc
Q 036742 550 K-AKQNLRKAIMALEACKAL 568 (629)
Q Consensus 550 ~-s~GDiR~AInlLq~~~~~ 568 (629)
. ..||+|..-|.++.+...
T Consensus 445 y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 445 YDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCCCchHHHHHHHHHHHHHh
Confidence 2 569999999999987653
No 204
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.94 E-value=2.6e-08 Score=112.53 Aligned_cols=195 Identities=16% Similarity=0.144 Sum_probs=127.6
Q ss_pred CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
.+.+|+|+....+.+.+.+.. ....+|||+|++||||+++|++|....... ...++.+||.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-----------------~~p~v~v~c~ 247 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-----------------DKPLVYLNCA 247 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-----------------CCCeEEEEcc
Confidence 578899998877777766652 223379999999999999999999863211 1237888885
Q ss_pred cchhhHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEE
Q 036742 434 LQANAKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKL 493 (629)
Q Consensus 434 ~~~~~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ 493 (629)
.... ..+. +++......|.. .....+.+|||||||.|....|..|+++++... .++++
T Consensus 248 ~~~~--~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 325 (509)
T PRK05022 248 ALPE--SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRV 325 (509)
T ss_pred cCCh--HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEE
Confidence 3321 1111 122211111111 011234589999999999999999999987432 25689
Q ss_pred EEEecCCc-------cchHHHhhcceE--eeccCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHHc-cCC
Q 036742 494 ILCCEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIMEV----LIQIARKED---FDLSMTFAAKIATKA-KQN 554 (629)
Q Consensus 494 ILitN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~i----L~~i~~keg---l~is~e~L~~Ia~~s-~GD 554 (629)
|++++..- .+.+.|..|+.+ |.++|+-. +++..+ |.+.+.+.+ +.++++++..|..+. .||
T Consensus 326 I~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGN 405 (509)
T PRK05022 326 IAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGN 405 (509)
T ss_pred EEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCc
Confidence 99887642 255667777644 55666543 233332 333444433 568999999988774 699
Q ss_pred HHHHHHHHHHHHhcC
Q 036742 555 LRKAIMALEACKALN 569 (629)
Q Consensus 555 iR~AInlLq~~~~~~ 569 (629)
+|..-|.++.+....
T Consensus 406 vrEL~~~i~ra~~~~ 420 (509)
T PRK05022 406 VRELEHVISRAALLA 420 (509)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999876644
No 205
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.94 E-value=1.6e-08 Score=114.39 Aligned_cols=195 Identities=16% Similarity=0.128 Sum_probs=126.5
Q ss_pred CCCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 355 SSLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
.+|++|+|.....+.+.+.++ .....+|||+|++||||+++|++|...-... ...++.+||
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~-----------------~~pfv~inC 271 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR-----------------DFPFVAINC 271 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcC-----------------CCCEEEecc
Confidence 568999999887777777765 2233479999999999999999998753111 123788888
Q ss_pred ccchhhHHHHH-HHHHHHHHHhccC---------cCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCc
Q 036742 433 NLQANAKYALM-GLVKEIRDNLAIT---------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSC 491 (629)
Q Consensus 433 s~~~~~k~~l~-~~lrei~~~~~~~---------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~ 491 (629)
..... ..+. +++......|... ....+..||||||+.|....|..|++++++.. .++
T Consensus 272 ~~l~e--~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dv 349 (526)
T TIGR02329 272 GAIAE--SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDV 349 (526)
T ss_pred ccCCh--hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecc
Confidence 53221 1111 1222111111111 01234599999999999999999999997532 235
Q ss_pred EEEEEecCCc-------cchHHHhhcc--eEeeccCCCH--HHHH----HHHHHHHHhcCCCCCHHHHHH-------HHH
Q 036742 492 KLILCCEDDV-------DIIESVKTHC--KVIKVDPPVT--HEIM----EVLIQIARKEDFDLSMTFAAK-------IAT 549 (629)
Q Consensus 492 ~~ILitN~~~-------~I~~aLrSR~--~~I~F~ppt~--eei~----~iL~~i~~kegl~is~e~L~~-------Ia~ 549 (629)
++|++++..- .+.+.|-.|+ ..|.++|+-. +++. .+|.+.+...++.++++++.. |..
T Consensus 350 RiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~ 429 (526)
T TIGR02329 350 RVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQR 429 (526)
T ss_pred eEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHh
Confidence 7888887642 2344555665 4566776654 3433 334444445566788888776 544
Q ss_pred H-ccCCHHHHHHHHHHHHhc
Q 036742 550 K-AKQNLRKAIMALEACKAL 568 (629)
Q Consensus 550 ~-s~GDiR~AInlLq~~~~~ 568 (629)
. ..||+|..-|.++.+...
T Consensus 430 y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 430 YPWPGNVRELRNLVERLALE 449 (526)
T ss_pred CCCCchHHHHHHHHHHHHHh
Confidence 4 469999999999987653
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.93 E-value=1.9e-08 Score=103.35 Aligned_cols=148 Identities=17% Similarity=0.216 Sum_probs=88.7
Q ss_pred hhccCCCCCCcccc----cHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 349 ADKHQPSSLNGFIC----HRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 349 ~eKyrP~tfddIiG----~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.+.|+..+|+++.. +..++..+.+++.. ....+++|+|+||||||+||.+||.++.....
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~-------------- 128 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK-------------- 128 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC--------------
Confidence 36778899999863 23466666666653 22357999999999999999999999853221
Q ss_pred CCcceEEEecccchh-hHHHH---HHHHHHHHHHhccCcCCCCeEEEEEccchhh--HHHHHHHHHHHh-ccCCCcEEEE
Q 036742 423 SSAHHVELNVNLQAN-AKYAL---MGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--EHIQYLIKWIMD-GYTDSCKLIL 495 (629)
Q Consensus 423 sS~~vleInas~~~~-~k~~l---~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--~~~q~aLlrilE-e~~~~~~~IL 495 (629)
.++.+...+... .+... ......+...+. ...||||||++... ......|..+++ .+....++|+
T Consensus 129 ---~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~-----~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tii 200 (244)
T PRK07952 129 ---SVLIITVADIMSAMKDTFSNSETSEEQLLNDLS-----NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM 200 (244)
T ss_pred ---eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc-----cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 145554422110 00000 000111111111 23499999998873 345567778887 4556788999
Q ss_pred EecCCcc-----chHHHhhcc-----eEeeccC
Q 036742 496 CCEDDVD-----IIESVKTHC-----KVIKVDP 518 (629)
Q Consensus 496 itN~~~~-----I~~aLrSR~-----~~I~F~p 518 (629)
++|.... +.+.+.+|+ ..+.|..
T Consensus 201 tSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~ 233 (244)
T PRK07952 201 LTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNW 233 (244)
T ss_pred eCCCCHHHHHHHhChHHHHHHHHCCceEEEeeC
Confidence 9997543 334444544 3556654
No 207
>PRK08116 hypothetical protein; Validated
Probab=98.90 E-value=1.2e-08 Score=106.09 Aligned_cols=150 Identities=15% Similarity=0.248 Sum_probs=90.1
Q ss_pred hccCCCCCCcccccHH---HHHHHHHHHH----cC-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 350 DKHQPSSLNGFICHRH---EAQLLKELVV----DG-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 350 eKyrP~tfddIiG~e~---~~~~Lk~~L~----~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
.+|+-.+|+++...+. ++...++++. .. ...+++|+|++|+|||+||.+||+++.....
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~------------- 143 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGV------------- 143 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCC-------------
Confidence 5666678888764332 4444454443 11 2236999999999999999999999853321
Q ss_pred cCCcceEEEecccch-hhHHHHH----HHHHHHHHHhccCcCCCCeEEEEEcc--chhhHHHHHHHHHHHhc-cCCCcEE
Q 036742 422 ASSAHHVELNVNLQA-NAKYALM----GLVKEIRDNLAITPEVSNAMIVIYEV--DKAAEHIQYLIKWIMDG-YTDSCKL 493 (629)
Q Consensus 422 ~sS~~vleInas~~~-~~k~~l~----~~lrei~~~~~~~~~~~~kVIIIDEI--D~Ls~~~q~aLlrilEe-~~~~~~~ 493 (629)
.++.++..... .+..... ....++...+. ...+|||||+ +..+...+..|..+++. +....++
T Consensus 144 ----~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~-----~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~ 214 (268)
T PRK08116 144 ----PVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV-----NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPT 214 (268)
T ss_pred ----eEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc-----CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCE
Confidence 14555542110 0000000 00011111111 2249999999 55677777888888873 5566789
Q ss_pred EEEecCCcc-----chHHHhhc----ceEeeccCCCH
Q 036742 494 ILCCEDDVD-----IIESVKTH----CKVIKVDPPVT 521 (629)
Q Consensus 494 ILitN~~~~-----I~~aLrSR----~~~I~F~ppt~ 521 (629)
|+|||.... +...+.+| |..|.|..++.
T Consensus 215 IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 215 IVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred EEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 999998643 35567777 56788876653
No 208
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.90 E-value=3.3e-08 Score=113.51 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=119.1
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec--ccchhhHHHHHHHHHHHHH-H
Q 036742 376 DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV--NLQANAKYALMGLVKEIRD-N 452 (629)
Q Consensus 376 ~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna--s~~~~~k~~l~~~lrei~~-~ 452 (629)
...+.||||.|+||||||++|++|+..+..... ++.+.. ....-...+ ++...+.. .
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~p------------------fv~i~~~~t~d~L~G~i--dl~~~~~~g~ 72 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPPIMP------------------FVELPLGVTEDRLIGGI--DVEESLAGGQ 72 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCcCCC------------------eEecCcccchhhcccch--hhhhhhhcCc
Confidence 344779999999999999999999997533211 222221 111000000 00000000 0
Q ss_pred hc----cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------CCcEEEEEecCCc---cchHHHhhcce
Q 036742 453 LA----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DSCKLILCCEDDV---DIIESVKTHCK 512 (629)
Q Consensus 453 ~~----~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~~~~ILitN~~~---~I~~aLrSR~~ 512 (629)
+. ......+.|||||||+.+....++.|+..|++.. ..+.+|.++|... .+.++|..|+.
T Consensus 73 ~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~ 152 (589)
T TIGR02031 73 RVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLA 152 (589)
T ss_pred ccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhcc
Confidence 00 1111233599999999999999999999998542 3456777777654 58899999985
Q ss_pred E-eecc-CCCHHHHHHHHHHHH-----------------------HhcCCCCCHHHHHHHHHHc---c-CCHHHHHHHHH
Q 036742 513 V-IKVD-PPVTHEIMEVLIQIA-----------------------RKEDFDLSMTFAAKIATKA---K-QNLRKAIMALE 563 (629)
Q Consensus 513 ~-I~F~-ppt~eei~~iL~~i~-----------------------~kegl~is~e~L~~Ia~~s---~-GDiR~AInlLq 563 (629)
. +.+. .++.++..+++.+.. ....+.++++++.+|++.+ + ..+|..+.++.
T Consensus 153 l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r 232 (589)
T TIGR02031 153 LHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVR 232 (589)
T ss_pred CeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence 3 4443 334444445444321 1134678898888887764 2 23788888888
Q ss_pred HHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742 564 ACKALNYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
.+.+.+.-...+..++.|+..++.-+.
T Consensus 233 ~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 233 AAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 877766655566667777666655443
No 209
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.89 E-value=4.5e-08 Score=114.41 Aligned_cols=195 Identities=16% Similarity=0.173 Sum_probs=123.1
Q ss_pred CCCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 355 SSLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
..|++++|.....+.+.+.+. .....+|||+|++|||||++|++|....... ...++.++|
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-----------------~~~~v~i~c 435 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN-----------------NRRMVKMNC 435 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-----------------CCCeEEEec
Confidence 468899999887776655554 1223379999999999999999998764211 123677887
Q ss_pred ccchhhHHHHH-HHHHHHHHHhc--------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcE
Q 036742 433 NLQANAKYALM-GLVKEIRDNLA--------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCK 492 (629)
Q Consensus 433 s~~~~~k~~l~-~~lrei~~~~~--------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~ 492 (629)
..... ..+. .++......+. ......+.+||||||+.|....|..|+++++... .+++
T Consensus 436 ~~~~~--~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 513 (686)
T PRK15429 436 AAMPA--GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 513 (686)
T ss_pred ccCCh--hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEE
Confidence 43211 0111 11111000000 0011224599999999999999999999997532 3568
Q ss_pred EEEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHH----HHHHHHHhcCC---CCCHHHHHHHHHH-ccC
Q 036742 493 LILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIME----VLIQIARKEDF---DLSMTFAAKIATK-AKQ 553 (629)
Q Consensus 493 ~ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~----iL~~i~~kegl---~is~e~L~~Ia~~-s~G 553 (629)
+|++++..- .+...|..|+. .|.++|+-. +++.. +|.+++.+.+. .++++++..|... ..|
T Consensus 514 iI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPG 593 (686)
T PRK15429 514 LIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPG 593 (686)
T ss_pred EEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 888887642 23445666654 455666543 33332 33344444333 4789999998776 469
Q ss_pred CHHHHHHHHHHHHhc
Q 036742 554 NLRKAIMALEACKAL 568 (629)
Q Consensus 554 DiR~AInlLq~~~~~ 568 (629)
|+|..-+.++.+...
T Consensus 594 NvrEL~~~i~~a~~~ 608 (686)
T PRK15429 594 NVRELENVIERAVLL 608 (686)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999987653
No 210
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.87 E-value=5e-09 Score=104.53 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=38.8
Q ss_pred CCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 356 SLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|.||+||+.++..|.-+...+ .|+||+||||||||++|+++...|
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence 4799999999999999888865 489999999999999999999765
No 211
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.87 E-value=8e-08 Score=110.70 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=46.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
.|..+++|+||+++++.|..++..+. +++|+||||||||++|++++..+.+.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 46677999999999999999998774 89999999999999999999987543
No 212
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.84 E-value=1.1e-07 Score=96.12 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=127.4
Q ss_pred hccCCCCCCcccccHHHHHHHH----HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLK----ELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk----~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
..+-|..+.+|+|-+..++.|. ++++.-...|+||+|--||||+++++|+..++...+.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----------------- 114 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL----------------- 114 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC-----------------
Confidence 4667788999999887666554 4555555669999999999999999999999865543
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-HHHHHHHHHHHh----ccCCCcEEEEEecCC
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-EHIQYLIKWIMD----GYTDSCKLILCCEDD 500 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-~~~q~aLlrilE----e~~~~~~~ILitN~~ 500 (629)
..+||+..+-.... .+.+.++. ...+-|||.||.--=. ....-+|..++| ..+.++.|..|+|+.
T Consensus 115 rLVEV~k~dl~~Lp-~l~~~Lr~---------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 115 RLVEVDKEDLATLP-DLVELLRA---------RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred eEEEEcHHHHhhHH-HHHHHHhc---------CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 26787765433221 12222222 1223488988764432 234445555554 456777788888887
Q ss_pred ccchHH----------------------Hhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH-----HHcc
Q 036742 501 VDIIES----------------------VKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIA-----TKAK 552 (629)
Q Consensus 501 ~~I~~a----------------------LrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia-----~~s~ 552 (629)
+.|.+. |-.|| +.+.|.+++.++..+++...+++.++.++++.+..-| ...+
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 655432 23455 5799999999999999999999999999876655433 2334
Q ss_pred CCHHHHHHHHHHHH
Q 036742 553 QNLRKAIMALEACK 566 (629)
Q Consensus 553 GDiR~AInlLq~~~ 566 (629)
.+-|.|-..++.++
T Consensus 265 RSGR~A~QF~~~~~ 278 (287)
T COG2607 265 RSGRVAWQFIRDLA 278 (287)
T ss_pred CccHhHHHHHHHHH
Confidence 45566665555443
No 213
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.80 E-value=8.7e-08 Score=107.79 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=92.7
Q ss_pred CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-
Q 036742 355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN- 433 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas- 433 (629)
..|+||.|+..+++.+.-.+..+. +++|.||||||||++|++++..+..... ...++....
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g~--~vlliG~pGsGKTtlar~l~~llp~~~~----------------~~~le~~~i~ 250 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGGH--NLLLFGPPGSGKTMLASRLQGILPPLTN----------------EEAIETARIW 250 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCCC--EEEEEecCCCCHHHHHHHHhcccCCCCC----------------cEEEeccccc
Confidence 378999999999888887776553 7999999999999999999986522111 001111110
Q ss_pred cchhh------------H-----HHHHHHHHHHHH-HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------
Q 036742 434 LQANA------------K-----YALMGLVKEIRD-NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------- 488 (629)
Q Consensus 434 ~~~~~------------k-----~~l~~~lrei~~-~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------- 488 (629)
...+. . ......+..-.. .-.......+.||||||++.+....++.|+..||...
T Consensus 251 s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g 330 (499)
T TIGR00368 251 SLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRAS 330 (499)
T ss_pred cchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecC
Confidence 00000 0 000000000000 0000001123599999999999999999999997532
Q ss_pred ------CCcEEEEEecCC------c-----------------cchHHHhhcc-eEeeccCCCHHH
Q 036742 489 ------DSCKLILCCEDD------V-----------------DIIESVKTHC-KVIKVDPPVTHE 523 (629)
Q Consensus 489 ------~~~~~ILitN~~------~-----------------~I~~aLrSR~-~~I~F~ppt~ee 523 (629)
..+.+|+++|.- . +|..+|++|+ ..+.+.+++.++
T Consensus 331 ~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 331 AKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 456788888752 1 4778899998 456777665443
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.80 E-value=4e-08 Score=87.78 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=57.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhH---------------HHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAK---------------YALMG 444 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k---------------~~l~~ 444 (629)
.+++|+||||||||++++.+|..+.... ..++.+++....... .....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-----------------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGEL 65 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-----------------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHH
Confidence 4799999999999999999999875432 014555543211100 00011
Q ss_pred HHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHH--------HHhccCCCcEEEEEecC
Q 036742 445 LVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKW--------IMDGYTDSCKLILCCED 499 (629)
Q Consensus 445 ~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlr--------ilEe~~~~~~~ILitN~ 499 (629)
.++........ ....||||||++.+.......... ..........+|+++|.
T Consensus 66 ~~~~~~~~~~~---~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 66 RLRLALALARK---LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHHHHHh---cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 11211111111 114699999999996654443322 23344567788889886
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.79 E-value=2.1e-08 Score=92.92 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=56.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH-----HHHHhcc
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE-----IRDNLAI 455 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre-----i~~~~~~ 455 (629)
|+||.|+||+|||++|+++|+.+ +..+. -+...+...-. +++.. ....+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-~~~f~-----------------RIq~tpdllPs------Di~G~~v~~~~~~~f~~ 56 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-GLSFK-----------------RIQFTPDLLPS------DILGFPVYDQETGEFEF 56 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-T--EE-----------------EEE--TT--HH------HHHEEEEEETTTTEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc-CCcee-----------------EEEecCCCCcc------cceeeeeeccCCCeeEe
Confidence 79999999999999999999997 43320 11111110000 11100 0001111
Q ss_pred C-cCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEecCCc-----cchHHHhhcce
Q 036742 456 T-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCCEDDV-----DIIESVKTHCK 512 (629)
Q Consensus 456 ~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILitN~~~-----~I~~aLrSR~~ 512 (629)
. +.....|+++||+.+..+..|.+|+..|++.. ....||.|-|..+ .+.++++.|+.
T Consensus 57 ~~GPif~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 57 RPGPIFTNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp EE-TT-SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ecChhhhceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 0 11123499999999999999999999998643 2233444556544 37888888874
No 216
>PRK06921 hypothetical protein; Provisional
Probab=98.78 E-value=9e-08 Score=99.61 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHhCC-CCCCCCCCccccccccCCcceEEEecccchh-hHHHHHHHHHHHHHHhcc
Q 036742 378 NCPHILIKGQSGSGKRALAMALLHEIYGD-ACWNEKWPTQVLVPVASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAI 455 (629)
Q Consensus 378 ~~p~ILL~GPPGtGKTtLAraLAkeL~g~-~~~~~~~~~~v~~~i~sS~~vleInas~~~~-~k~~l~~~lrei~~~~~~ 455 (629)
...+++|+||+|+|||+||.+||+++... +. .++++...+... ..... +.+.+....+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~-----------------~v~y~~~~~l~~~l~~~~-~~~~~~~~~~-- 175 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV-----------------PVLYFPFVEGFGDLKDDF-DLLEAKLNRM-- 175 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc-----------------eEEEEEHHHHHHHHHHHH-HHHHHHHHHh--
Confidence 34679999999999999999999997532 21 256665522111 00000 1111111111
Q ss_pred CcCCCCeEEEEEccch-------hhHHHHHHHHHHHhcc-CCCcEEEEEecCCcc----chHHHhhc
Q 036742 456 TPEVSNAMIVIYEVDK-------AAEHIQYLIKWIMDGY-TDSCKLILCCEDDVD----IIESVKTH 510 (629)
Q Consensus 456 ~~~~~~kVIIIDEID~-------Ls~~~q~aLlrilEe~-~~~~~~ILitN~~~~----I~~aLrSR 510 (629)
....||||||++. ++......|..+++.. ....++|+++|.... +.+.|.+|
T Consensus 176 ---~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sR 239 (266)
T PRK06921 176 ---KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239 (266)
T ss_pred ---cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHH
Confidence 1234999999944 3444556677777643 345678999987533 23455554
No 217
>PF13173 AAA_14: AAA domain
Probab=98.78 E-value=6e-08 Score=89.42 Aligned_cols=121 Identities=20% Similarity=0.251 Sum_probs=80.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~ 459 (629)
+.++|+||.||||||+++.+++.+.... .+++++..+.........+....+.+.. ..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~------------------~~~yi~~~~~~~~~~~~~~~~~~~~~~~----~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPE------------------NILYINFDDPRDRRLADPDLLEYFLELI----KP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccc------------------cceeeccCCHHHHHHhhhhhHHHHHHhh----cc
Confidence 4689999999999999999999874111 2677777544332111011112222211 11
Q ss_pred CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc----chHHHhhcceEeeccCCCHHHH
Q 036742 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD----IIESVKTHCKVIKVDPPVTHEI 524 (629)
Q Consensus 460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~----I~~aLrSR~~~I~F~ppt~eei 524 (629)
...+||||||+.+. +....+..+.+.. .++.||+++..... +.+.+..|...+++.|++-.|.
T Consensus 61 ~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 45699999999995 5667777777754 56788888766544 3466778889999999987764
No 218
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.77 E-value=2e-07 Score=103.11 Aligned_cols=197 Identities=17% Similarity=0.182 Sum_probs=133.6
Q ss_pred CCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 355 SSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
....+++|+..+.+.|.+.+.+ ...-.|||+|++||||-.+|++|-..-.. ....++.|||
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R-----------------~~~PFVavNc 200 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR-----------------AKGPFIAVNC 200 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc-----------------cCCCceeeec
Confidence 3568899998888888877752 22336999999999999999999876311 1223788888
Q ss_pred ccchhhHHHHHH-HHHHHHHHhccCcC--------CCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcE
Q 036742 433 NLQANAKYALMG-LVKEIRDNLAITPE--------VSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCK 492 (629)
Q Consensus 433 s~~~~~k~~l~~-~lrei~~~~~~~~~--------~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~ 492 (629)
..-.. .+++. +|..-...|..... ..+..||||||..|.-+.|.-|++++++-. -+++
T Consensus 201 aAip~--~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 201 AAIPE--NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred ccCCH--HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 42221 12222 22222222222211 124499999999999999999999998532 3467
Q ss_pred EEEEecCCc-------cchHHHhhcceEeeccCCCHHH----H----HHHHHHHHHhcCC---CCCHHHHHHHHHH-ccC
Q 036742 493 LILCCEDDV-------DIIESVKTHCKVIKVDPPVTHE----I----MEVLIQIARKEDF---DLSMTFAAKIATK-AKQ 553 (629)
Q Consensus 493 ~ILitN~~~-------~I~~aLrSR~~~I~F~ppt~ee----i----~~iL~~i~~kegl---~is~e~L~~Ia~~-s~G 553 (629)
||.+||..- .+-+.|-.|+.++.+.-|+-.+ | ...|++.|...+. .++++++..|..+ ..|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG 358 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG 358 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCh
Confidence 888888642 2567888888877665555433 2 2445556665544 6789999888776 469
Q ss_pred CHHHHHHHHHHHHhcCC
Q 036742 554 NLRKAIMALEACKALNY 570 (629)
Q Consensus 554 DiR~AInlLq~~~~~~~ 570 (629)
|+|..-|.++.+.....
T Consensus 359 NVREL~N~ver~~il~~ 375 (464)
T COG2204 359 NVRELENVVERAVILSE 375 (464)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999998776543
No 219
>PRK08181 transposase; Validated
Probab=98.77 E-value=4.4e-08 Score=102.03 Aligned_cols=108 Identities=10% Similarity=0.126 Sum_probs=63.9
Q ss_pred HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh-hHHH-HHHHHH
Q 036742 370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN-AKYA-LMGLVK 447 (629)
Q Consensus 370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~-~k~~-l~~~lr 447 (629)
+..|+..+ .+++|+||||||||+||.+++.++...+. .++++.+.+... .... ....+.
T Consensus 99 ~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~-----------------~v~f~~~~~L~~~l~~a~~~~~~~ 159 (269)
T PRK08181 99 GDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGW-----------------RVLFTRTTDLVQKLQVARRELQLE 159 (269)
T ss_pred HHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCC-----------------ceeeeeHHHHHHHHHHHHhCCcHH
Confidence 34677754 47999999999999999999998743321 144444421100 0000 000001
Q ss_pred HHHHHhccCcCCCCeEEEEEccchh--hHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 448 EIRDNLAITPEVSNAMIVIYEVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 448 ei~~~~~~~~~~~~kVIIIDEID~L--s~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.....+ ....+|||||++.+ ....+..|..+++..-....+|+++|.+.
T Consensus 160 ~~l~~l-----~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 160 SAIAKL-----DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPF 210 (269)
T ss_pred HHHHHH-----hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 111111 12349999999887 34556678888874333468999998753
No 220
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.76 E-value=2.3e-07 Score=102.50 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=121.9
Q ss_pred CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
.+.+++|.....+.+...+.. ....+++|+|++||||+++|+++....... ...++.++|.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-----------------~~~~v~v~c~ 199 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRK-----------------DKRFVAINCA 199 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcC-----------------CCCeEEEECC
Confidence 456788877666666655542 223468999999999999999998763211 1226778875
Q ss_pred cchhhHHHHHHH-HHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEE
Q 036742 434 LQANAKYALMGL-VKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKL 493 (629)
Q Consensus 434 ~~~~~k~~l~~~-lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ 493 (629)
.... ..+... +......|.. .....+.+||||||+.|....|..|+++++... .++++
T Consensus 200 ~~~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 200 AIPE--NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred CCCh--HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 3321 111111 1111111110 011234599999999999999999999997432 25688
Q ss_pred EEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHH----HHHHHHHhcC---CCCCHHHHHHHHHHc-cCC
Q 036742 494 ILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIME----VLIQIARKED---FDLSMTFAAKIATKA-KQN 554 (629)
Q Consensus 494 ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~----iL~~i~~keg---l~is~e~L~~Ia~~s-~GD 554 (629)
|++++..- .+.+.|..|+. .|.++|+-. +++.. +|.+.+.+.+ ..++++++..|.... .||
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence 88887642 24566767765 455555543 23322 3333444333 458999999988775 799
Q ss_pred HHHHHHHHHHHHhc
Q 036742 555 LRKAIMALEACKAL 568 (629)
Q Consensus 555 iR~AInlLq~~~~~ 568 (629)
+|..-+.++.+...
T Consensus 358 vreL~~~i~~a~~~ 371 (445)
T TIGR02915 358 VRELENKVKRAVIM 371 (445)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 221
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.75 E-value=2.6e-07 Score=97.02 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=114.5
Q ss_pred cccHHH---HHHHHHHHH---cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742 361 ICHRHE---AQLLKELVV---DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL 434 (629)
Q Consensus 361 iG~e~~---~~~Lk~~L~---~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~ 434 (629)
||.+.+ ++.|.+++. ..++|++||+|++|.|||++++.+++. +......+ . ....|+.+.+-.
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~-hp~~~d~~-~---------~~~PVv~vq~P~ 105 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL-HPPQSDED-A---------ERIPVVYVQMPP 105 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH-CCCCCCCC-C---------ccccEEEEecCC
Confidence 666654 455556564 456789999999999999999999986 33322111 0 011344444311
Q ss_pred chhhHHHHHHHHHHHHHHh--------------ccCcCCCCeEEEEEccchhh-------HHHHHHHHHHHhccCCCcEE
Q 036742 435 QANAKYALMGLVKEIRDNL--------------AITPEVSNAMIVIYEVDKAA-------EHIQYLIKWIMDGYTDSCKL 493 (629)
Q Consensus 435 ~~~~k~~l~~~lrei~~~~--------------~~~~~~~~kVIIIDEID~Ls-------~~~q~aLlrilEe~~~~~~~ 493 (629)
..+...+...++..+..-+ ......+-++|||||++.+. ....++|+.+-++ -.+++
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne--L~ipi 183 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE--LQIPI 183 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc--cCCCe
Confidence 1111111112222111100 11112234599999999972 2344555555443 34566
Q ss_pred EEEecCCc----cchHHHhhcceEeeccCCCHH-HHHHHHHHHHHhcCC----CC-CHHHHHHHHHHccCCHHHHHHHHH
Q 036742 494 ILCCEDDV----DIIESVKTHCKVIKVDPPVTH-EIMEVLIQIARKEDF----DL-SMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 494 ILitN~~~----~I~~aLrSR~~~I~F~ppt~e-ei~~iL~~i~~kegl----~i-s~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
|++....- .-++.+.+|+..+.+++...+ +....|...-....+ .+ +++....|...++|.+.....+|.
T Consensus 184 V~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~ 263 (302)
T PF05621_consen 184 VGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLN 263 (302)
T ss_pred EEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHH
Confidence 66654321 136889999999999877654 444444443322111 22 456678999999999999999999
Q ss_pred HHHhcCC
Q 036742 564 ACKALNY 570 (629)
Q Consensus 564 ~~~~~~~ 570 (629)
.++..+.
T Consensus 264 ~aA~~AI 270 (302)
T PF05621_consen 264 AAAIAAI 270 (302)
T ss_pred HHHHHHH
Confidence 8776554
No 222
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.73 E-value=2e-07 Score=97.46 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=91.2
Q ss_pred CcEEEEEecC-C-ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHccCCHHHHHHH
Q 036742 490 SCKLILCCED-D-VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKE------DFDLSMTFAAKIATKAKQNLRKAIMA 561 (629)
Q Consensus 490 ~~~~ILitN~-~-~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~ke------gl~is~e~L~~Ia~~s~GDiR~AInl 561 (629)
.+.+|.+|+. | ..+.++|+|||.++.|.+++.+++..+|++.+..+ .+.+++++++.|++.++||.|.++|+
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~ 87 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL 87 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence 3445555433 3 35899999999999999999999999999988642 36789999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHhcC-C-C----hHHHHHHHH--------HHHHHHHcCCCHHHHHHHHh
Q 036742 562 LEACKALNYPFADDQPIPLGWEEVLIELAAEILAD-P-S----PKRLVMVRG--------KIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 562 Lq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~il~~-~-s----~~~L~~ir~--------kly~lL~~~i~~~~i~~~La 627 (629)
|+.+......-.....+...+++.+..-.....+. + - ...++++|+ .+..+|..+.+|.+|+.+|-
T Consensus 88 LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLi 167 (300)
T PRK14700 88 LERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRML 167 (300)
T ss_pred HHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99965321110001122233333332211111111 1 0 111233333 45668999999999999885
Q ss_pred c
Q 036742 628 Y 628 (629)
Q Consensus 628 ~ 628 (629)
.
T Consensus 168 i 168 (300)
T PRK14700 168 C 168 (300)
T ss_pred H
Confidence 3
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.71 E-value=3.4e-07 Score=98.55 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=60.4
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEecCC-------ccchHHHhhcceEeeccCCCH-H
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCCEDD-------VDIIESVKTHCKVIKVDPPVT-H 522 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILitN~~-------~~I~~aLrSR~~~I~F~ppt~-e 522 (629)
.|+-|+|++....+.++.|+.++++.. -...||.++|.. .+..++|++||..+.++.+.. .
T Consensus 238 Gi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~ 317 (361)
T smart00763 238 GILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVS 317 (361)
T ss_pred ceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCHH
Confidence 499999999999999999999988532 112345566665 256899999999988876653 4
Q ss_pred HHHHHHHHHHHhc---CCCCCHHHHHHHH
Q 036742 523 EIMEVLIQIARKE---DFDLSMTFAAKIA 548 (629)
Q Consensus 523 ei~~iL~~i~~ke---gl~is~e~L~~Ia 548 (629)
+-.+|.++.+... +..+.+.++..++
T Consensus 318 ~E~~Iy~k~~~~s~~~~~~~aP~~le~aa 346 (361)
T smart00763 318 EEAQIYEKLLRNSDLTEAHIAPHTLEMAA 346 (361)
T ss_pred HHHHHHHHHhccCcCcccccCchHHHHHH
Confidence 4456666655433 4556666555544
No 224
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.71 E-value=1.5e-07 Score=91.50 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=71.4
Q ss_pred ccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742 360 FICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN 437 (629)
Q Consensus 360 IiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~ 437 (629)
|+|.......+.+.++. ....+|||+|++||||+.+|++|-..... ....++.+||.....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-----------------~~~pfi~vnc~~~~~ 63 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-----------------KNGPFISVNCAALPE 63 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-----------------TTS-EEEEETTTS-H
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-----------------ccCCeEEEehhhhhc
Confidence 46666655555555542 22247999999999999999999874211 123478999964322
Q ss_pred hHHHHHHHHHHHHHHhccC--------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc-----------CCCcEEEEEec
Q 036742 438 AKYALMGLVKEIRDNLAIT--------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-----------TDSCKLILCCE 498 (629)
Q Consensus 438 ~k~~l~~~lrei~~~~~~~--------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-----------~~~~~~ILitN 498 (629)
. .+-.+++......+... ....+.+||||||+.|....|..|+++++.. ..+++||++|+
T Consensus 64 ~-~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 64 E-LLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS 142 (168)
T ss_dssp H-HHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES
T ss_pred c-hhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC
Confidence 1 01111111110011000 0113459999999999999999999999842 13678899888
Q ss_pred CC
Q 036742 499 DD 500 (629)
Q Consensus 499 ~~ 500 (629)
..
T Consensus 143 ~~ 144 (168)
T PF00158_consen 143 KD 144 (168)
T ss_dssp S-
T ss_pred cC
Confidence 54
No 225
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.2e-07 Score=96.01 Aligned_cols=110 Identities=21% Similarity=0.265 Sum_probs=67.1
Q ss_pred ccccHHHHHHHHHHHH--------cCC-------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 360 FICHRHEAQLLKELVV--------DGN-------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 360 IiG~e~~~~~Lk~~L~--------~g~-------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
++||+.+++.|.-++- ... ..+|||.||.|||||.||+.+|+.|.-+...-+ .-.....
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD------ATtLTEA 136 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD------ATTLTEA 136 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecc------ccchhhc
Confidence 6799988876653331 111 137999999999999999999999854421000 0000111
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhh--------------HHHHHHHHHHHhc
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAA--------------EHIQYLIKWIMDG 486 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls--------------~~~q~aLlrilEe 486 (629)
+|| ..-++.++-.+++.....- .....||+|||||.+. +++|.+|++++|.
T Consensus 137 GYV-----------GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 137 GYV-----------GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred ccc-----------chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 111 1123344444444333221 1234599999999993 4789999999985
No 226
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.68 E-value=3.2e-07 Score=102.02 Aligned_cols=198 Identities=16% Similarity=0.148 Sum_probs=129.6
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 351 KHQPSSLNGFICHRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
.+...+|++|+|.......+.+.++.. ....|||.|.+||||-.+|++|-+.-. - ..+.++
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~-R----------------~~~PFI 300 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSP-R----------------ANGPFI 300 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCc-c----------------cCCCeE
Confidence 455668999999888776666666532 234799999999999999999886521 1 123478
Q ss_pred EEecccchhhHHHHH-HHHHHHHHHhccCcCC---------CCeEEEEEccchhhHHHHHHHHHHHhccC----------
Q 036742 429 ELNVNLQANAKYALM-GLVKEIRDNLAITPEV---------SNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------- 488 (629)
Q Consensus 429 eInas~~~~~k~~l~-~~lrei~~~~~~~~~~---------~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------- 488 (629)
.+||..-.. .+++ ++|.-....|..+... .+.-||||||..|.-..|..|++++++-.
T Consensus 301 aiNCaAiPe--~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~ 378 (560)
T COG3829 301 AINCAAIPE--TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPI 378 (560)
T ss_pred EEecccCCH--HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCce
Confidence 899842211 1233 2333333344433321 13399999999999999999999998532
Q ss_pred -CCcEEEEEecCCcc-------chHHHhhcceEeeccCCCH----HHHH----HHHHHHHHhcCC---CCCHHHHHHHHH
Q 036742 489 -DSCKLILCCEDDVD-------IIESVKTHCKVIKVDPPVT----HEIM----EVLIQIARKEDF---DLSMTFAAKIAT 549 (629)
Q Consensus 489 -~~~~~ILitN~~~~-------I~~aLrSR~~~I~F~ppt~----eei~----~iL~~i~~kegl---~is~e~L~~Ia~ 549 (629)
.+++||.+||..-. +-+.|--|+.++.+.-|+- +++. ..|.+...+.+- .++++++..|.+
T Consensus 379 ~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~ 458 (560)
T COG3829 379 PVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR 458 (560)
T ss_pred eeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence 44678999987422 3455666776655443432 2222 223333333332 378999988877
Q ss_pred H-ccCCHHHHHHHHHHHHh
Q 036742 550 K-AKQNLRKAIMALEACKA 567 (629)
Q Consensus 550 ~-s~GDiR~AInlLq~~~~ 567 (629)
. ..|++|..-|+++.+..
T Consensus 459 y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 459 YDWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCCchHHHHHHHHHHHHh
Confidence 6 56999999999998664
No 227
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.9e-07 Score=96.94 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=72.2
Q ss_pred EEEEEccchhh------------HHHHHHHHHHHhccC----------CCcEEEEEe----cCCccchHHHhhcc-eEee
Q 036742 463 MIVIYEVDKAA------------EHIQYLIKWIMDGYT----------DSCKLILCC----EDDVDIIESVKTHC-KVIK 515 (629)
Q Consensus 463 VIIIDEID~Ls------------~~~q~aLlrilEe~~----------~~~~~ILit----N~~~~I~~aLrSR~-~~I~ 515 (629)
||||||||.+. .++|.-|+.++|... +++.||.+. ..|++++|.|.-|+ ..++
T Consensus 253 IvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVE 332 (444)
T COG1220 253 IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVE 332 (444)
T ss_pred eEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEE
Confidence 99999999992 256777888888543 222333332 34778999999999 5799
Q ss_pred ccCCCHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHHcc--------CCHHHHHHHHHHH
Q 036742 516 VDPPVTHEIMEVLIQ-----------IARKEDF--DLSMTFAAKIATKAK--------QNLRKAIMALEAC 565 (629)
Q Consensus 516 F~ppt~eei~~iL~~-----------i~~kegl--~is~e~L~~Ia~~s~--------GDiR~AInlLq~~ 565 (629)
+..++.+++..||.. .+.-+++ .+++++++.||+.+. =-.|+.-..|+.+
T Consensus 333 L~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 333 LDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred cccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 999999998887743 2445665 458999998887642 1246666666543
No 228
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.68 E-value=4.1e-07 Score=100.10 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=130.1
Q ss_pred CCCcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 356 SLNGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
.+.+|||+-.+...+.+.+. ...--.|||+|..||||-.+|++|-..- .-. ...++.+||.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S-~R~----------------~kPfV~~NCA 283 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS-PRR----------------DKPFVKLNCA 283 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC-ccc----------------CCCceeeecc
Confidence 56789999887777776664 2233379999999999999999998752 211 1237888884
Q ss_pred cchhhHHHHH-HHHHHHHHHhccCcCC--------CCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEE
Q 036742 434 LQANAKYALM-GLVKEIRDNLAITPEV--------SNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKL 493 (629)
Q Consensus 434 ~~~~~k~~l~-~~lrei~~~~~~~~~~--------~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ 493 (629)
.-.. .+++ ++|.-....|..+... .+.-||+|||..|.-..|..|++.+.+.. -+++|
T Consensus 284 AlPe--sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRi 361 (550)
T COG3604 284 ALPE--SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRV 361 (550)
T ss_pred ccch--HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEE
Confidence 2211 0222 3333333333332211 23499999999999999999999997542 34578
Q ss_pred EEEecCCc-------cchHHHhhcceEeeccCCCHHH-------HH-HHHHHHHHhcCC---CCCHHHHHHHHHH-ccCC
Q 036742 494 ILCCEDDV-------DIIESVKTHCKVIKVDPPVTHE-------IM-EVLIQIARKEDF---DLSMTFAAKIATK-AKQN 554 (629)
Q Consensus 494 ILitN~~~-------~I~~aLrSR~~~I~F~ppt~ee-------i~-~iL~~i~~kegl---~is~e~L~~Ia~~-s~GD 554 (629)
|.+||..- ++-..|--|+-++.+.-|+-.| +. ..+++++.+.|. .++.++++.|... ..||
T Consensus 362 IAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGN 441 (550)
T COG3604 362 IAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGN 441 (550)
T ss_pred EeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCc
Confidence 99998642 2456677777766654444322 22 334445555444 6789999998876 4699
Q ss_pred HHHHHHHHHHHHhcC
Q 036742 555 LRKAIMALEACKALN 569 (629)
Q Consensus 555 iR~AInlLq~~~~~~ 569 (629)
+|...|.++.+...+
T Consensus 442 VRELen~veRavlla 456 (550)
T COG3604 442 VRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877644
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.64 E-value=3.4e-07 Score=98.07 Aligned_cols=130 Identities=15% Similarity=0.251 Sum_probs=77.7
Q ss_pred HHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742 366 EAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM 443 (629)
Q Consensus 366 ~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~ 443 (629)
+++..+.++.. ....+++|+||+|+|||+||.+||+++...+. .|+++++.+..
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~-----------------~V~y~t~~~l~------- 223 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGK-----------------SVIYRTADELI------- 223 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCC-----------------eEEEEEHHHHH-------
Confidence 44545556651 12268999999999999999999999854332 26666653211
Q ss_pred HHHHHHH-HH---hc--cCcCCCCeEEEEEccchh--hHHHHHHHHHHHhc-cCCCcEEEEEecCCcc-----chHHHhh
Q 036742 444 GLVKEIR-DN---LA--ITPEVSNAMIVIYEVDKA--AEHIQYLIKWIMDG-YTDSCKLILCCEDDVD-----IIESVKT 509 (629)
Q Consensus 444 ~~lrei~-~~---~~--~~~~~~~kVIIIDEID~L--s~~~q~aLlrilEe-~~~~~~~ILitN~~~~-----I~~aLrS 509 (629)
..++... .. .. ...-....+|||||+... +...+..|..+++. +....++|++||.... +.+.+.+
T Consensus 224 ~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 224 EILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred HHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHH
Confidence 1111100 00 00 000112249999999665 56666777778774 3446789999997543 3456677
Q ss_pred cc----eEeeccCC
Q 036742 510 HC----KVIKVDPP 519 (629)
Q Consensus 510 R~----~~I~F~pp 519 (629)
|+ .++.|...
T Consensus 304 RL~~~~~~i~~~G~ 317 (329)
T PRK06835 304 RLLGNFTLLKFYGE 317 (329)
T ss_pred HHHcCCEEEEecCc
Confidence 65 45666543
No 230
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=2.2e-07 Score=84.70 Aligned_cols=102 Identities=19% Similarity=0.320 Sum_probs=61.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~ 459 (629)
..++|+||+|+|||++++.+++.+..... ......++.+++........+ ...+...+......
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~----~~~i~~~l~~~~~~ 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAE------------IKNHPDVIYVNCPSSRTPRDF----AQEILEALGLPLKS 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHH------------HCCCEEEEEEEHHHHSSHHHH----HHHHHHHHT-SSSS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhh------------ccCCCcEEEEEeCCCCCHHHH----HHHHHHHhCccccc
Confidence 36899999999999999999998742100 000123566666332222222 22222222211111
Q ss_pred ------------------CCeEEEEEccchh-hHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 460 ------------------SNAMIVIYEVDKA-AEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 460 ------------------~~kVIIIDEID~L-s~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
...+|||||+|.+ ..+..+.|+.+.+ ...+.||++++.
T Consensus 69 ~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 RQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 1139999999999 8888888888877 677888888875
No 231
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.63 E-value=7.2e-07 Score=99.38 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=121.8
Q ss_pred CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
.+.+++|.......+...+.. .....++|.|++||||+++|+++....... ...++.++|.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-----------------~~~~i~i~c~ 198 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA-----------------KAPFIALNMA 198 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC-----------------CCCeEeeeCC
Confidence 456788877666555555431 122369999999999999999988763211 1236788885
Q ss_pred cchhhHHHHH-HHHHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEE
Q 036742 434 LQANAKYALM-GLVKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKL 493 (629)
Q Consensus 434 ~~~~~k~~l~-~~lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ 493 (629)
..... .+. .++......+.. .....+..|||||||.|....|..|+++++... .++++
T Consensus 199 ~~~~~--~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 199 AIPKD--LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred CCCHH--HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 33211 111 111111111110 011224589999999999999999999997532 24578
Q ss_pred EEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHH----HHHHHHHhcCC---CCCHHHHHHHHHH-ccCC
Q 036742 494 ILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIME----VLIQIARKEDF---DLSMTFAAKIATK-AKQN 554 (629)
Q Consensus 494 ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~----iL~~i~~kegl---~is~e~L~~Ia~~-s~GD 554 (629)
|++++..- .+.+.|..|+. .|.++|+-. +++.. +|...+.+.+. .++++++..|..+ ..||
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 356 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCh
Confidence 88887542 35677888874 455666543 33333 33333444332 4789999988877 4699
Q ss_pred HHHHHHHHHHHHhc
Q 036742 555 LRKAIMALEACKAL 568 (629)
Q Consensus 555 iR~AInlLq~~~~~ 568 (629)
+|..-|.++.+...
T Consensus 357 v~eL~~~i~~~~~~ 370 (469)
T PRK10923 357 VRQLENTCRWLTVM 370 (469)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 232
>PRK06526 transposase; Provisional
Probab=98.63 E-value=9.2e-08 Score=98.90 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=60.4
Q ss_pred HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhh-HH-HHHHHHHHH
Q 036742 372 ELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA-KY-ALMGLVKEI 449 (629)
Q Consensus 372 ~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~-k~-~l~~~lrei 449 (629)
+|+.. ..+++|+||||||||+||.+|+.++...+. .++.+.+...... .. .....+...
T Consensus 93 ~fi~~--~~nlll~Gp~GtGKThLa~al~~~a~~~g~-----------------~v~f~t~~~l~~~l~~~~~~~~~~~~ 153 (254)
T PRK06526 93 DFVTG--KENVVFLGPPGTGKTHLAIGLGIRACQAGH-----------------RVLFATAAQWVARLAAAHHAGRLQAE 153 (254)
T ss_pred chhhc--CceEEEEeCCCCchHHHHHHHHHHHHHCCC-----------------chhhhhHHHHHHHHHHHHhcCcHHHH
Confidence 45543 347999999999999999999998743321 0222222110000 00 000000111
Q ss_pred HHHhccCcCCCCeEEEEEccchh--hHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 450 RDNLAITPEVSNAMIVIYEVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 450 ~~~~~~~~~~~~kVIIIDEID~L--s~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
...+ ....||||||++.+ .....+.|..+++.-.....+|+++|.+.
T Consensus 154 l~~l-----~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 154 LVKL-----GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred HHHh-----ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 1111 12349999999987 46666778888764333456899998753
No 233
>PRK15115 response regulator GlrR; Provisional
Probab=98.63 E-value=8.9e-07 Score=97.86 Aligned_cols=191 Identities=19% Similarity=0.230 Sum_probs=113.6
Q ss_pred cccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742 359 GFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA 436 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~ 436 (629)
.++|.......+.+.+. ...-..++|+|++|+||+++|+++....... ...++.++|....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~-----------------~~~f~~i~c~~~~ 197 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRA-----------------SKPFIAINCGALP 197 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCC-----------------CCCeEEEeCCCCC
Confidence 45665443333332222 1223469999999999999999998864211 1236788875322
Q ss_pred hhHHHHHHH-HHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEE
Q 036742 437 NAKYALMGL-VKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILC 496 (629)
Q Consensus 437 ~~k~~l~~~-lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILi 496 (629)
. ..+... +......+.. .....+.+|||||||.|....|..|+++++... .++++|++
T Consensus 198 ~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~ 275 (444)
T PRK15115 198 E--QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISA 275 (444)
T ss_pred H--HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEe
Confidence 1 111111 1111111110 111234599999999999999999999997532 24678888
Q ss_pred ecCCc-------cchHHHhhcceE--eeccCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHHc-cCCHHH
Q 036742 497 CEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIMEV----LIQIARKED---FDLSMTFAAKIATKA-KQNLRK 557 (629)
Q Consensus 497 tN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~i----L~~i~~keg---l~is~e~L~~Ia~~s-~GDiR~ 557 (629)
++..- .+.+.|..|+.. |.++|+-. +++..+ +...+.+.+ ..++++++..|.... .||+|.
T Consensus 276 ~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvre 355 (444)
T PRK15115 276 THRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 (444)
T ss_pred CCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHH
Confidence 77531 233455555543 44444432 233323 333333333 247999999999887 899999
Q ss_pred HHHHHHHHHhc
Q 036742 558 AIMALEACKAL 568 (629)
Q Consensus 558 AInlLq~~~~~ 568 (629)
..+.++.+...
T Consensus 356 L~~~i~~~~~~ 366 (444)
T PRK15115 356 LVNVIEQCVAL 366 (444)
T ss_pred HHHHHHHHHHh
Confidence 99999986653
No 234
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.63 E-value=8.9e-07 Score=92.17 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=76.3
Q ss_pred cccccHHHHHHHHHHH----HcCC--CCeEE-EEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 359 GFICHRHEAQLLKELV----VDGN--CPHIL-IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L----~~g~--~p~IL-L~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
-+.||.-+++.+-..+ .... .|-+| |||++||||..+++.||+.++..+. .|.+|..+-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl--------------~S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL--------------RSPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc--------------cchhHHHhh
Confidence 3566655555554444 4433 23344 9999999999999999999864432 122222221
Q ss_pred cc----cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------CCcEEEEEecCC
Q 036742 432 VN----LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------DSCKLILCCEDD 500 (629)
Q Consensus 432 as----~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------~~~~~ILitN~~ 500 (629)
+. ....+...-.++-+.++.+.. .....++|+||+|.|.++..+.|...++.++ .+..||+.+|.-
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~---~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQ---ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHH---hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 21 112221111222233333322 2233599999999999999999999999654 445788888764
Q ss_pred c
Q 036742 501 V 501 (629)
Q Consensus 501 ~ 501 (629)
.
T Consensus 226 g 226 (344)
T KOG2170|consen 226 G 226 (344)
T ss_pred c
Confidence 4
No 235
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.58 E-value=7e-08 Score=94.57 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=55.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP- 457 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~- 457 (629)
..+++|+||+|||||+||.++++++...+. .+++++.. +++..+........
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-----------------~v~f~~~~----------~L~~~l~~~~~~~~~ 99 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGY-----------------SVLFITAS----------DLLDELKQSRSDGSY 99 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT-------------------EEEEEHH----------HHHHHHHCCHCCTTH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCc-----------------ceeEeecC----------ceeccccccccccch
Confidence 348999999999999999999998854332 14555442 11111111110000
Q ss_pred ------CCCCeEEEEEccchh--hHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 458 ------EVSNAMIVIYEVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 458 ------~~~~kVIIIDEID~L--s~~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
-....+|||||+... +....+.|..+++.--.+.+.|+|||..
T Consensus 100 ~~~~~~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 100 EELLKRLKRVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp CHHHHHHHTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred hhhcCccccccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 001239999999765 4556666777776332345789999964
No 236
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.58 E-value=3.7e-06 Score=103.83 Aligned_cols=263 Identities=15% Similarity=0.132 Sum_probs=137.0
Q ss_pred chhhhhhhcCCCCCCCCCCccccCChhhHhHHHHHhhccCchhhhccCCCCCCcccccHHHHHHHHHHHHc--CCCCeEE
Q 036742 306 DAWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHRHEAQLLKELVVD--GNCPHIL 383 (629)
Q Consensus 306 ~~~~~~~~~~~~~~~~~s~~~~~~de~~~ie~a~v~~~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~--g~~p~IL 383 (629)
..|-..++......|-.. ....+|.+++++. +. .....+ ..-.+..+++++|.+..++.|..++.. .....+-
T Consensus 137 ~~w~~al~~~~~~~g~~~--~~~~~E~~~i~~I-v~-~v~~~l-~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvg 211 (1153)
T PLN03210 137 IQWKQALTDVANILGYHS--QNWPNEAKMIEEI-AN-DVLGKL-NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVG 211 (1153)
T ss_pred HHHHHHHHHHhCcCceec--CCCCCHHHHHHHH-HH-HHHHhh-ccccCcccccccchHHHHHHHHHHHccccCceEEEE
Confidence 467666654433333211 2234677777753 11 111111 122345689999999999999998853 2344577
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc-ccccCCcceEE-EecccchhhHHHHHHHHHHHHHHhccC-----
Q 036742 384 IKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL-VPVASSAHHVE-LNVNLQANAKYALMGLVKEIRDNLAIT----- 456 (629)
Q Consensus 384 L~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~-~~i~sS~~vle-Inas~~~~~k~~l~~~lrei~~~~~~~----- 456 (629)
|+||+|+||||+|++++..+..... . . ..+. ..+........ .+.........+....+.++.......
T Consensus 212 I~G~gGiGKTTLA~~l~~~l~~~F~-g-~--vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~ 287 (1153)
T PLN03210 212 IWGSSGIGKTTIARALFSRLSRQFQ-S-S--VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLG 287 (1153)
T ss_pred EEcCCCCchHHHHHHHHHHHhhcCC-e-E--EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHH
Confidence 9999999999999999988643210 0 0 0000 00000000000 000000000001112222222111100
Q ss_pred -----cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHH
Q 036742 457 -----PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQI 531 (629)
Q Consensus 457 -----~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i 531 (629)
-..++.+||||+++.. ...+.|....+.+..+.+||+||.+...+... .-..++.+..++.++..+++...
T Consensus 288 ~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~--~~~~~~~v~~l~~~ea~~LF~~~ 363 (1153)
T PLN03210 288 AMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAH--GIDHIYEVCLPSNELALEMFCRS 363 (1153)
T ss_pred HHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc--CCCeEEEecCCCHHHHHHHHHHH
Confidence 0122349999999864 34555555555555678899998865433211 01246888889999999999888
Q ss_pred HHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742 532 ARKEDFDLS--MTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 532 ~~kegl~is--~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
+.+....-+ .+....|++.|+|-+ -|+..+-..- .+ . ....|+.++..+.
T Consensus 364 Af~~~~~~~~~~~l~~~iv~~c~GLP-LAl~vlgs~L-~~------k-~~~~W~~~l~~L~ 415 (1153)
T PLN03210 364 AFKKNSPPDGFMELASEVALRAGNLP-LGLNVLGSYL-RG------R-DKEDWMDMLPRLR 415 (1153)
T ss_pred hcCCCCCcHHHHHHHHHHHHHhCCCc-HHHHHHHHHH-cC------C-CHHHHHHHHHHHH
Confidence 765433211 134566788888844 4555543322 11 1 1256777766554
No 237
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.58 E-value=1.6e-06 Score=96.19 Aligned_cols=194 Identities=13% Similarity=0.117 Sum_probs=122.0
Q ss_pred CcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742 358 NGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ 435 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~ 435 (629)
..++|.......+...+. .+..-.+++.|.+||||+++|+++....... ...++.++|...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~-----------------~~~~~~~~c~~~ 196 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA-----------------NGPFIALNMAAI 196 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC-----------------CCCeEEEeCCCC
Confidence 457776554444444432 1223368999999999999999998763211 123677777533
Q ss_pred hhhHHHHHHHH-HHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEE
Q 036742 436 ANAKYALMGLV-KEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLIL 495 (629)
Q Consensus 436 ~~~k~~l~~~l-rei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~IL 495 (629)
.. ..+...+ ......|.. .....+..|||||||.|....|..|+++++... .++++|+
T Consensus 197 ~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 197 PK--DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred CH--HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 21 1111111 110001110 011224589999999999999999999997532 2457888
Q ss_pred EecCCc-------cchHHHhhcce--EeeccCCC--HHHHHHHHHH----HHHhcC---CCCCHHHHHHHHHHc-cCCHH
Q 036742 496 CCEDDV-------DIIESVKTHCK--VIKVDPPV--THEIMEVLIQ----IARKED---FDLSMTFAAKIATKA-KQNLR 556 (629)
Q Consensus 496 itN~~~-------~I~~aLrSR~~--~I~F~ppt--~eei~~iL~~----i~~keg---l~is~e~L~~Ia~~s-~GDiR 556 (629)
+++..- .+.+.|..|+. .|.++|+. .+++..++.. .+...+ ..++++++..|.... .||+|
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvr 354 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVR 354 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHH
Confidence 887542 34567777764 57777776 4555544433 344333 467899999988775 69999
Q ss_pred HHHHHHHHHHhcCC
Q 036742 557 KAIMALEACKALNY 570 (629)
Q Consensus 557 ~AInlLq~~~~~~~ 570 (629)
..-+.++.+...+.
T Consensus 355 eL~~~~~~~~~~~~ 368 (463)
T TIGR01818 355 QLENLCRWLTVMAS 368 (463)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999998776543
No 238
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.58 E-value=6.2e-06 Score=86.19 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=114.1
Q ss_pred CCeEEEEEccchhh-HHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHh--hcceEeeccCCCHHHHHHHHHHHHH
Q 036742 460 SNAMIVIYEVDKAA-EHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVK--THCKVIKVDPPVTHEIMEVLIQIAR 533 (629)
Q Consensus 460 ~~kVIIIDEID~Ls-~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLr--SR~~~I~F~ppt~eei~~iL~~i~~ 533 (629)
..+||+|++++.+. ....+.|..+++.++..+.+|++++..+. +...+. ++|.++.|.+++..++..++...+.
T Consensus 46 ~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 125 (302)
T TIGR01128 46 ERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLK 125 (302)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHH
Confidence 45699999999985 35678899999988888888888875443 222333 4999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH--------HHHHHHHhcCCChHHHHHH
Q 036742 534 KEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL--------IELAAEILADPSPKRLVMV 605 (629)
Q Consensus 534 kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l--------~ei~~~il~~~s~~~L~~i 605 (629)
+.|+.+++++++.|+..++||++.+.+.|+.++..... +..+..++++++ .+++..++.+.....+
T Consensus 126 ~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~---~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~--- 199 (302)
T TIGR01128 126 KLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPD---GKITLEDVEEAVSDSARFNVFDLTDALLEGKAARAL--- 199 (302)
T ss_pred HcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCC---CCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHH---
Confidence 99999999999999999999999999999987764221 112223444333 3445544444332222
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 036742 606 RGKIQKLLAEFVHPKLILLVM 626 (629)
Q Consensus 606 r~kly~lL~~~i~~~~i~~~L 626 (629)
..+..++..+.+|-.|+..|
T Consensus 200 -~~l~~l~~~~~~~~~il~~l 219 (302)
T TIGR01128 200 -RILKGLLGEGEEPLILLALL 219 (302)
T ss_pred -HHHHHHHHCCCcHHHHHHHH
Confidence 23444555555555554444
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.55 E-value=6.6e-07 Score=94.97 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=72.3
Q ss_pred hccCCCCCCccccc----HHHHHHHHHHHHcC----CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 350 DKHQPSSLNGFICH----RHEAQLLKELVVDG----NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 350 eKyrP~tfddIiG~----e~~~~~Lk~~L~~g----~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
..+...+|+++... ..+......|+... ...+++|+||+|||||+||.|+|+++...+.
T Consensus 119 ~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~------------- 185 (306)
T PRK08939 119 KDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV------------- 185 (306)
T ss_pred HhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-------------
Confidence 34445678877643 23445556666532 3458999999999999999999999853221
Q ss_pred cCCcceEEEecccc-hhhHHHH-HHHHHHHHHHhccCcCCCCeEEEEEccchh--hHHHH-HHHHHHHh-ccCCCcEEEE
Q 036742 422 ASSAHHVELNVNLQ-ANAKYAL-MGLVKEIRDNLAITPEVSNAMIVIYEVDKA--AEHIQ-YLIKWIMD-GYTDSCKLIL 495 (629)
Q Consensus 422 ~sS~~vleInas~~-~~~k~~l-~~~lrei~~~~~~~~~~~~kVIIIDEID~L--s~~~q-~aLlrilE-e~~~~~~~IL 495 (629)
.+..+..... ...+... ...+.+....+. ...||||||+... +.... ..|..+++ .+....+.|+
T Consensus 186 ----~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~-----~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~ 256 (306)
T PRK08939 186 ----SSTLLHFPEFIRELKNSISDGSVKEKIDAVK-----EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFF 256 (306)
T ss_pred ----CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc-----CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 1333333210 0000000 000111111111 2249999999765 44443 34444555 3346788999
Q ss_pred EecCC
Q 036742 496 CCEDD 500 (629)
Q Consensus 496 itN~~ 500 (629)
|+|..
T Consensus 257 TSNl~ 261 (306)
T PRK08939 257 TSNFD 261 (306)
T ss_pred ECCCC
Confidence 99954
No 240
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.55 E-value=2.9e-06 Score=93.95 Aligned_cols=192 Identities=14% Similarity=0.181 Sum_probs=115.5
Q ss_pred CcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742 358 NGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ 435 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~ 435 (629)
.+++|.......+.+.+.. .....++++|++||||+++|+++....... ...++.++|...
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-----------------~~~~~~i~c~~~ 205 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA-----------------KGPFIKVNCAAL 205 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCC-----------------CCCeEEEECCCC
Confidence 4567765544444444321 122369999999999999999997753211 123677777532
Q ss_pred hhhHHHHHH-HHHHHHHHhc--------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEE
Q 036742 436 ANAKYALMG-LVKEIRDNLA--------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLIL 495 (629)
Q Consensus 436 ~~~k~~l~~-~lrei~~~~~--------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~IL 495 (629)
.. ..+.. ++......+. ......+.+|||||||.|....|..|+.+++... .++++|+
T Consensus 206 ~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~ 283 (457)
T PRK11361 206 PE--SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIA 283 (457)
T ss_pred CH--HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEE
Confidence 21 11111 1111000110 0111234599999999999999999999987422 2468888
Q ss_pred EecCCc-------cchHHHhhcceE--eeccCCCH--HHHHH----HHHHHHHhcC---CCCCHHHHHHHHHHc-cCCHH
Q 036742 496 CCEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIME----VLIQIARKED---FDLSMTFAAKIATKA-KQNLR 556 (629)
Q Consensus 496 itN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~----iL~~i~~keg---l~is~e~L~~Ia~~s-~GDiR 556 (629)
+++..- .+.+.+..|+.. |.++|+-. +++.. +|.+.+.+.+ ..++++++..|.... .||+|
T Consensus 284 ~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~ 363 (457)
T PRK11361 284 ATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIR 363 (457)
T ss_pred eCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHH
Confidence 887542 245556666644 44555442 23332 3333343322 357899999988775 79999
Q ss_pred HHHHHHHHHHhc
Q 036742 557 KAIMALEACKAL 568 (629)
Q Consensus 557 ~AInlLq~~~~~ 568 (629)
..-+.++.+...
T Consensus 364 eL~~~~~~~~~~ 375 (457)
T PRK11361 364 ELSNVIERAVVM 375 (457)
T ss_pred HHHHHHHHHHHh
Confidence 999999976653
No 241
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.2e-07 Score=106.14 Aligned_cols=123 Identities=15% Similarity=0.238 Sum_probs=83.2
Q ss_pred CcccccHHHHHHHHHHHHcC-----C---CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742 358 NGFICHRHEAQLLKELVVDG-----N---CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g-----~---~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle 429 (629)
+.|+||++++..+.+++..- + .--+||.||.|+|||-||+++|..+++... .++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~-----------------~~Ir 624 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEE-----------------NFIR 624 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCcc-----------------ceEE
Confidence 45899999999999999621 1 124899999999999999999999977642 1445
Q ss_pred EecccchhhH--------HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CC
Q 036742 430 LNVNLQANAK--------YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DS 490 (629)
Q Consensus 430 Inas~~~~~k--------~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~ 490 (629)
|+.+....+. +.-.+....+.+.... .-+.||+|||||......++.|+.+++... .+
T Consensus 625 iDmse~~evskligsp~gyvG~e~gg~Lteavrr---rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 625 LDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKR---RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred echhhhhhhhhccCCCcccccchhHHHHHHHHhc---CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 5443210000 0001111122222111 123599999999999999999999998654 66
Q ss_pred cEEEEEecCC
Q 036742 491 CKLILCCEDD 500 (629)
Q Consensus 491 ~~~ILitN~~ 500 (629)
+.||||+|.-
T Consensus 702 ~I~IMTsn~~ 711 (898)
T KOG1051|consen 702 AIFIMTSNVG 711 (898)
T ss_pred eEEEEecccc
Confidence 7899998763
No 242
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.47 E-value=9e-07 Score=104.37 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred CcccccHHHHHHHHHHHHcCC------------------C---CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 358 NGFICHRHEAQLLKELVVDGN------------------C---PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~------------------~---p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
-.|.|++.++..|.-.|-.|. . .||||.|+|||||+.+|+++++......+
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~y-------- 521 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIY-------- 521 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcccc--------
Confidence 368899998887765554332 1 18999999999999999999985211100
Q ss_pred ccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC--------
Q 036742 417 VLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------- 488 (629)
Q Consensus 417 v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------- 488 (629)
..+. ....+++....... ...-.+............+.+++|||+|.|....+.+|+..||...
T Consensus 522 ----tsG~-~~s~vgLTa~~~~~---d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 522 ----TSGK-SSSSVGLTASIKFN---ESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred ----CCCC-CCccccccchhhhc---ccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCc
Confidence 0000 01111110000000 0000000000000111234599999999999999999999998542
Q ss_pred -----CCcEEEEEecCCc-------------cchHHHhhcc-eE-eeccCCCHHHHHHHHHHH
Q 036742 489 -----DSCKLILCCEDDV-------------DIIESVKTHC-KV-IKVDPPVTHEIMEVLIQI 531 (629)
Q Consensus 489 -----~~~~~ILitN~~~-------------~I~~aLrSR~-~~-I~F~ppt~eei~~iL~~i 531 (629)
..+.||.+||... .+.++|.+|| ++ +.+..++.+.=..+...+
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHH
Confidence 4567888888631 2679999999 43 445666654433333333
No 243
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=98.47 E-value=4e-05 Score=81.56 Aligned_cols=220 Identities=11% Similarity=0.077 Sum_probs=138.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcC-
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPE- 458 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~- 458 (629)
|.+||||+----....+..+...+..... . .-.+.+++..+.. .+.++.......+-
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~-~-------------~fn~~~~d~~~~~--------~~~~~~~~~~t~pff 59 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEW-K-------------SFNYSRLDGDDAD--------QAIQALNEAMTPPFG 59 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchh-h-------------hcchhhcCCccch--------HHHHHHHHhcCCCCC
Confidence 57899999888887777777766532211 0 0012233322111 12233332222222
Q ss_pred CCCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecC-Cc---cchHHHhhcceEeeccCC---CHHHHHHHH
Q 036742 459 VSNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCED-DV---DIIESVKTHCKVIKVDPP---VTHEIMEVL 528 (629)
Q Consensus 459 ~~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~-~~---~I~~aLrSR~~~I~F~pp---t~eei~~iL 528 (629)
...++|+|++++.+ .....+.|..+++.+++.+.+|+++.. .+ ++...+...+.+..|.++ +.+++..++
T Consensus 60 ~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i 139 (326)
T PRK07452 60 SGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLV 139 (326)
T ss_pred CCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHH
Confidence 34579999998655 566778899999988888888876533 22 245567777778887655 457799999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH-------HHHHHHHHhcCCChHH
Q 036742 529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV-------LIELAAEILADPSPKR 601 (629)
Q Consensus 529 ~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~-------l~ei~~~il~~~s~~~ 601 (629)
...+.+.|+.++++++..|++.+++|++.+.+.|+.+++.... .....+..+++.+ +.+++..++.+....
T Consensus 140 ~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~-~~~~It~~~V~~~v~~~~~~if~l~dai~~~~~~~- 217 (326)
T PRK07452 140 ERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAEN-STKPISAEEVKALVSNTTQNSLQLADALLQGNTGK- 217 (326)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccC-CCCccCHHHHHHHhccCcCcHHHHHHHHHCCCHHH-
Confidence 9999999999999999999999999999999999988764110 0111222333333 344555554443322
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742 602 LVMVRGKIQKLLAEFVHPKLILLVM 626 (629)
Q Consensus 602 L~~ir~kly~lL~~~i~~~~i~~~L 626 (629)
....+..++..+.+|-.|+--|
T Consensus 218 ---A~~~l~~L~~~g~~p~~il~~l 239 (326)
T PRK07452 218 ---ALALLDDLLDANEPALRIVATL 239 (326)
T ss_pred ---HHHHHHHHHHCCCcHHHHHHHH
Confidence 2234556667777776665444
No 244
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.47 E-value=8.4e-05 Score=79.09 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=104.4
Q ss_pred CCeEEEEEccchhhHH-HHHHHHHHHh--ccCCC--cEEEEEecCCcc---c---hHHHhhcceEeeccCCCHHHHHHHH
Q 036742 460 SNAMIVIYEVDKAAEH-IQYLIKWIMD--GYTDS--CKLILCCEDDVD---I---IESVKTHCKVIKVDPPVTHEIMEVL 528 (629)
Q Consensus 460 ~~kVIIIDEID~Ls~~-~q~aLlrilE--e~~~~--~~~ILitN~~~~---I---~~aLrSR~~~I~F~ppt~eei~~iL 528 (629)
..+||+|++++.+... ....+..+.+ .+... ..+|+..+..+. + ..++..++.++.|.+++..++..++
T Consensus 76 ~~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i 155 (340)
T PRK05574 76 DRKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWI 155 (340)
T ss_pred cCeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHH
Confidence 4569999999998554 2233333333 22322 333444443322 3 5678888999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH--------HHHHHHHhcCCChH
Q 036742 529 IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL--------IELAAEILADPSPK 600 (629)
Q Consensus 529 ~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l--------~ei~~~il~~~s~~ 600 (629)
...+.+.|+.+++++++.|++.++||++.+.+.|+.++..... +..+..++++++ +++...++.+....
T Consensus 156 ~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~---~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~ 232 (340)
T PRK05574 156 QQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPD---GKITLEDVEEAVPDSARFDVFDLVDAILAGKIKR 232 (340)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999987764311 112333333332 34444444443222
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 601 RLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 601 ~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
....+..++..+.+|-.|+-.|.
T Consensus 233 ----a~~~l~~l~~~~~~~~~il~~l~ 255 (340)
T PRK05574 233 ----ALRILDGLRLEGEEPIKLLAALQ 255 (340)
T ss_pred ----HHHHHHHHHHCCCcHHHHHHHHH
Confidence 22334455556666655554443
No 245
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5e-06 Score=95.26 Aligned_cols=171 Identities=14% Similarity=0.161 Sum_probs=108.9
Q ss_pred cccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 361 ICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 361 iG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
-+.+..+..+..++.... .+.+||+|+||||||++++++|.++ |.. +++++
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l-g~h-------------------~~evd 463 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL-GLH-------------------LLEVD 463 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh-CCc-------------------eEecc
Confidence 345555555666664222 3468999999999999999999997 654 56776
Q ss_pred cccch-hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHh--ccC---CCcEEEEEe
Q 036742 432 VNLQA-NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMD--GYT---DSCKLILCC 497 (629)
Q Consensus 432 as~~~-~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilE--e~~---~~~~~ILit 497 (629)
|..-- ......+-.+ ...|.......+.||||-.+|.+.. ..+..++..+. .+. ....||.+|
T Consensus 464 c~el~~~s~~~~etkl---~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~ 540 (953)
T KOG0736|consen 464 CYELVAESASHTETKL---QAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATT 540 (953)
T ss_pred HHHHhhcccchhHHHH---HHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEec
Confidence 63110 0000001111 1223333334567999998887721 23344444443 222 334577788
Q ss_pred cCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccCCHH
Q 036742 498 EDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQNLR 556 (629)
Q Consensus 498 N~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~GDiR 556 (629)
+..+.+.+.|++-+. .|.++.++.+|..++|+-.+.... ++.+ .++.++..+.|-.+
T Consensus 541 ~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 541 SSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred cccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCH
Confidence 888999999999874 699999999999999998877654 4433 46678887776443
No 246
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.45 E-value=3e-06 Score=95.43 Aligned_cols=158 Identities=11% Similarity=0.100 Sum_probs=89.5
Q ss_pred CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc----CC---cce
Q 036742 355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA----SS---AHH 427 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~----sS---~~v 427 (629)
.+|.++.|+..+++.+.-.+..| .+++|.||+|||||++++.++..+....... .+++... +. ..-
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~g~e-----~le~~~i~s~~g~~~~~~~ 260 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLSNEE-----ALESAAILSLVNAESVQKQ 260 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCCCcE-----EEecchhhhhhccccccCC
Confidence 37888899998887776555544 4899999999999999999998753221100 0000000 00 000
Q ss_pred EEEecc--cchhhHHHHHHHHHHHH-HHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-------------CCCc
Q 036742 428 VELNVN--LQANAKYALMGLVKEIR-DNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-------------TDSC 491 (629)
Q Consensus 428 leInas--~~~~~k~~l~~~lrei~-~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-------------~~~~ 491 (629)
+...+. -..... ...++..-. -.-.......+.+|||||++.+....++.|+..||.. +..+
T Consensus 261 ~~~rPfr~ph~~~s--~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f 338 (506)
T PRK09862 261 WRQRPFRSPHHSAS--LTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARF 338 (506)
T ss_pred cCCCCccCCCccch--HHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCE
Confidence 000000 000000 001111000 0000001122459999999999999999999998743 2456
Q ss_pred EEEEEecCCc---------------------cchHHHhhcce-EeeccCCCH
Q 036742 492 KLILCCEDDV---------------------DIIESVKTHCK-VIKVDPPVT 521 (629)
Q Consensus 492 ~~ILitN~~~---------------------~I~~aLrSR~~-~I~F~ppt~ 521 (629)
.+|.++|... .|..++.+||- .+.+++++.
T Consensus 339 ~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~ 390 (506)
T PRK09862 339 QLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390 (506)
T ss_pred EEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence 7888888642 36678999984 467776643
No 247
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.45 E-value=1.1e-06 Score=82.14 Aligned_cols=106 Identities=19% Similarity=0.298 Sum_probs=66.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV 459 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~ 459 (629)
..|+|+|++||||+++|++|.... +... ..++.+++.... .+.+.. .
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~-~~~~----------------~~~~~~~~~~~~------~~~l~~----------a 68 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYS-GRAN----------------GPFIVIDCASLP------AELLEQ----------A 68 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTT-TTCC----------------S-CCCCCHHCTC------HHHHHH----------C
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhc-CccC----------------CCeEEechhhCc------HHHHHH----------c
Confidence 369999999999999999998863 2211 012222332111 112222 1
Q ss_pred CCeEEEEEccchhhHHHHHHHHHHHhcc-CCCcEEEEEecCCc-c------chHHHhhcc--eEeeccC
Q 036742 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGY-TDSCKLILCCEDDV-D------IIESVKTHC--KVIKVDP 518 (629)
Q Consensus 460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~-~~~~~~ILitN~~~-~------I~~aLrSR~--~~I~F~p 518 (629)
.+..|||+|+|.|..+.|..|...++.. ..++++|++|...- . +.+.|..++ ..|.+++
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 4468999999999999999999999854 57789999887543 2 455666665 3454443
No 248
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.9e-07 Score=98.72 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=42.1
Q ss_pred CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|.||+||+.+++.|.-....|. |+||+||||||||.+|..+..-|
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccC
Confidence 478999999999999998888766 79999999999999999887754
No 249
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.41 E-value=1.4e-05 Score=86.85 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=109.8
Q ss_pred CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCC----C--CC---CCCCcccccccc-----
Q 036742 357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA----C--WN---EKWPTQVLVPVA----- 422 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~----~--~~---~~~~~~v~~~i~----- 422 (629)
|.-++|++..+..|.--...-.+.++||-|+.|+||||++++|+..|-... | .. .....|..|.-.
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~ 95 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELE 95 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccc
Confidence 577899999777665554455567899999999999999999999863111 0 00 000011111111
Q ss_pred ---CCcceEEE-ec----ccchhh-HHHHHHHHHHHHHHh--ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC---
Q 036742 423 ---SSAHHVEL-NV----NLQANA-KYALMGLVKEIRDNL--AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT--- 488 (629)
Q Consensus 423 ---sS~~vleI-na----s~~~~~-k~~l~~~lrei~~~~--~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~--- 488 (629)
.....+++ +. ..++-+ .--++..+++-.+.| .+.......||+|||+..|....+++|+..+++.-
T Consensus 96 ~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~v 175 (423)
T COG1239 96 WLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDV 175 (423)
T ss_pred cccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCcee
Confidence 00001111 11 011000 000112222211111 12222334599999999999999999999988631
Q ss_pred ----------CCcEEEEEecCCc-cchHHHhhcc-eEeecc-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Q 036742 489 ----------DSCKLILCCEDDV-DIIESVKTHC-KVIKVD-PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL 555 (629)
Q Consensus 489 ----------~~~~~ILitN~~~-~I~~aLrSR~-~~I~F~-ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDi 555 (629)
..+.+|.+.|.-. .|-+.|+.|| ..+... +.+.++.++++.+.+..+ ..++.+++.++.. ...+
T Consensus 176 ereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~--~~Pe~f~~~~~~~-~~~l 252 (423)
T COG1239 176 EREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFE--AVPEAFLEKYADA-QRAL 252 (423)
T ss_pred eeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhh--cCcHHHHHHHHHH-HHHH
Confidence 2223444555433 4899999997 456654 455677778888877663 3345455544433 3345
Q ss_pred H
Q 036742 556 R 556 (629)
Q Consensus 556 R 556 (629)
|
T Consensus 253 R 253 (423)
T COG1239 253 R 253 (423)
T ss_pred H
Confidence 5
No 250
>PF05729 NACHT: NACHT domain
Probab=98.40 E-value=2.3e-06 Score=80.36 Aligned_cols=141 Identities=13% Similarity=0.174 Sum_probs=78.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch------hhHHHHHHHHHHHHHHh-
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA------NAKYALMGLVKEIRDNL- 453 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~------~~k~~l~~~lrei~~~~- 453 (629)
-++|+|+||+|||++++.++..+........ ....++.+...... .....+...+.......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 70 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPS-----------KFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE 70 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccc-----------cceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH
Confidence 4789999999999999999988754332110 00112333331110 11111111111110000
Q ss_pred ----ccCcCCCCeEEEEEccchhhHHH--------HHHHHHHHhc-cCCCcEEEEEecCCccc-hHHHhhcceEeeccCC
Q 036742 454 ----AITPEVSNAMIVIYEVDKAAEHI--------QYLIKWIMDG-YTDSCKLILCCEDDVDI-IESVKTHCKVIKVDPP 519 (629)
Q Consensus 454 ----~~~~~~~~kVIIIDEID~Ls~~~--------q~aLlrilEe-~~~~~~~ILitN~~~~I-~~aLrSR~~~I~F~pp 519 (629)
.........+||||-+|.+.... ...|..++.. ...++.+|++|.....- ..........+.+.++
T Consensus 71 ~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 71 ELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred HHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 00112233499999999996532 2345555654 45678888888754331 2222222367899999
Q ss_pred CHHHHHHHHHHHH
Q 036742 520 VTHEIMEVLIQIA 532 (629)
Q Consensus 520 t~eei~~iL~~i~ 532 (629)
+.+++.+++....
T Consensus 151 ~~~~~~~~~~~~f 163 (166)
T PF05729_consen 151 SEEDIKQYLRKYF 163 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999987654
No 251
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.40 E-value=1.2e-06 Score=91.46 Aligned_cols=141 Identities=17% Similarity=0.294 Sum_probs=83.1
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742 369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448 (629)
Q Consensus 369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre 448 (629)
.|.-++..+. ++||+||+|||||++++.+...+....+ .+..++.+..... ..+..
T Consensus 25 ll~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~~~-----------------~~~~~~~s~~Tts-----~~~q~ 80 (272)
T PF12775_consen 25 LLDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSDKY-----------------LVITINFSAQTTS-----NQLQK 80 (272)
T ss_dssp HHHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTCCE-----------------EEEEEES-TTHHH-----HHHHH
T ss_pred HHHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcccc-----------------ceeEeeccCCCCH-----HHHHH
Confidence 4555556543 7999999999999999987766533221 0233444322221 11222
Q ss_pred HHHHhccC--------cCCCCeEEEEEccchhhH------HHHHHHHHHHhcc---C---------CCcEEEEEecCCc-
Q 036742 449 IRDNLAIT--------PEVSNAMIVIYEVDKAAE------HIQYLIKWIMDGY---T---------DSCKLILCCEDDV- 501 (629)
Q Consensus 449 i~~~~~~~--------~~~~~kVIIIDEID~Ls~------~~q~aLlrilEe~---~---------~~~~~ILitN~~~- 501 (629)
+++..... ..++..|+||||+..-.. ...+.|+.+++.. . .++.+|.+++...
T Consensus 81 ~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G 160 (272)
T PF12775_consen 81 IIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG 160 (272)
T ss_dssp CCCTTECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT
T ss_pred HHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC
Confidence 22111110 112233999999987743 3568888888732 1 3445677776532
Q ss_pred --cchHHHhhcceEeeccCCCHHHHHHHHHHHHH
Q 036742 502 --DIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR 533 (629)
Q Consensus 502 --~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~ 533 (629)
.+.+.+.+.+.++.+..|+.+.+..|...++.
T Consensus 161 r~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 161 RNPISPRFLRHFNILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp --SHHHHHHTTEEEEE----TCCHHHHHHHHHHH
T ss_pred CCCCChHHhhheEEEEecCCChHHHHHHHHHHHh
Confidence 37889999999999999999999888877765
No 252
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.5e-06 Score=89.85 Aligned_cols=124 Identities=15% Similarity=0.272 Sum_probs=72.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccC-cCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT-PEV 459 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~-~~~ 459 (629)
+|||.||.|+|||.||+.||+.+.-+....+. -.+.+.+|| +. -++.++..+...+... ...
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDc------TtLTQAGYV-------Ge----DVEsvi~KLl~~A~~nVekA 290 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDC------TTLTQAGYV-------GE----DVESVIQKLLQEAEYNVEKA 290 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecc------cchhhcccc-------cc----cHHHHHHHHHHHccCCHHHH
Confidence 79999999999999999999988544210000 001112222 11 1223333333332221 112
Q ss_pred CCeEEEEEccchhh--------------HHHHHHHHHHHhccC-------------------CCcEEEEEecC-CccchH
Q 036742 460 SNAMIVIYEVDKAA--------------EHIQYLIKWIMDGYT-------------------DSCKLILCCED-DVDIIE 505 (629)
Q Consensus 460 ~~kVIIIDEID~Ls--------------~~~q~aLlrilEe~~-------------------~~~~~ILitN~-~~~I~~ 505 (629)
+..|+||||+|.+. +++|.+|++++|..- +...|+++|.. ...|+.
T Consensus 291 QqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk 370 (564)
T KOG0745|consen 291 QQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDK 370 (564)
T ss_pred hcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHH
Confidence 34599999999994 478999999998421 11224555543 345777
Q ss_pred HHhhcce--EeeccCCCH
Q 036742 506 SVKTHCK--VIKVDPPVT 521 (629)
Q Consensus 506 aLrSR~~--~I~F~ppt~ 521 (629)
.|-+|.. .+-|..++.
T Consensus 371 ~I~rR~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 371 IISRRLDDKSLGFGAPSS 388 (564)
T ss_pred HHHHhhcchhcccCCCCC
Confidence 7777764 466666643
No 253
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=98.38 E-value=0.00016 Score=77.61 Aligned_cols=228 Identities=13% Similarity=0.070 Sum_probs=142.6
Q ss_pred HHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHH
Q 036742 370 LKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK 447 (629)
Q Consensus 370 Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lr 447 (629)
+...+. .+..|.+||||+-.......+..+.+.+..... . ...+..+...+... ...
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~-~-------------~fn~~~~~~~e~~~-------~~~ 67 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLD-D-------------PFAVVRLDGDDLDA-------DPA 67 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCC-C-------------CcceeeccHHHhhc-------CHH
Confidence 344444 335678999999998888888888877532210 0 00122332211110 022
Q ss_pred HHHHHhccCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHh--hcceEeeccCCCH
Q 036742 448 EIRDNLAITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVK--THCKVIKVDPPVT 521 (629)
Q Consensus 448 ei~~~~~~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLr--SR~~~I~F~ppt~ 521 (629)
++...+...+-+ ..++|++.+.+. .....|..+++.+...+.+|+.+..... +...+. .....+.|.+++.
T Consensus 68 ~~~~~~~t~slF~~~rlViv~~~~~---~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~ 144 (343)
T PRK06585 68 RLEDEANAISLFGGRRLIWVRAGSK---NLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDE 144 (343)
T ss_pred HHHHHHhCCCCCCCceEEEEECCch---hHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCH
Confidence 333333333222 346999996653 3345677777777777777776544322 223232 2345788889999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH--------HHHHHHHH
Q 036742 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV--------LIELAAEI 593 (629)
Q Consensus 522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~--------l~ei~~~i 593 (629)
.++..++...+.+.|+.++++++..|++.++||++.+.+.|+.+.+.... .+..+..+++.+ +++++..+
T Consensus 145 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~--~~~It~edV~~lv~~~~e~~if~l~dai 222 (343)
T PRK06585 145 RDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHG--KGEITLDDVRAVVGDASALSLDDAADAA 222 (343)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHhCCcccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999988775321 122233444333 35666666
Q ss_pred hcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 594 LADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 594 l~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
+.++....+ ..+..++..+.+|-.|+-.|+
T Consensus 223 ~~~~~~~a~----~~l~~ll~~g~~p~~il~~L~ 252 (343)
T PRK06585 223 LAGDLAAFE----RALDRALAEGTAPVLILRAAL 252 (343)
T ss_pred HCCCHHHHH----HHHHHHHHcCCCHHHHHHHHH
Confidence 666543333 335566777777777766554
No 254
>PRK09183 transposase/IS protein; Provisional
Probab=98.38 E-value=1.3e-06 Score=90.52 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=62.3
Q ss_pred HHHHHHHH--HHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch-hhHHH
Q 036742 365 HEAQLLKE--LVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA-NAKYA 441 (629)
Q Consensus 365 ~~~~~Lk~--~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~-~~k~~ 441 (629)
..+..|.. |+..+ .+++|+||+|||||+||.+|+..+...+. .+.++++.... .....
T Consensus 88 ~~i~~L~~~~~i~~~--~~v~l~Gp~GtGKThLa~al~~~a~~~G~-----------------~v~~~~~~~l~~~l~~a 148 (259)
T PRK09183 88 KQLQSLRSLSFIERN--ENIVLLGPSGVGKTHLAIALGYEAVRAGI-----------------KVRFTTAADLLLQLSTA 148 (259)
T ss_pred HHHHHHhcCCchhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCC-----------------eEEEEeHHHHHHHHHHH
Confidence 34444432 34443 37999999999999999999887532221 14454432111 00000
Q ss_pred -HHHHHHHHHHHhccCcCCCCeEEEEEccchh--hHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 442 -LMGLVKEIRDNLAITPEVSNAMIVIYEVDKA--AEHIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 442 -l~~~lrei~~~~~~~~~~~~kVIIIDEID~L--s~~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
....+....... .....++||||++.+ .....+.|..+++..-....+|+|+|.+
T Consensus 149 ~~~~~~~~~~~~~----~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 149 QRQGRYKTTLQRG----VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred HHCCcHHHHHHHH----hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 000011111111 112349999999875 4555667777776433334688898875
No 255
>PHA00729 NTP-binding motif containing protein
Probab=98.38 E-value=3.3e-06 Score=85.76 Aligned_cols=131 Identities=12% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHH
Q 036742 370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI 449 (629)
Q Consensus 370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei 449 (629)
+.+.+..+...+++|+|+|||||||+|.+|+..+. .....-. .....+ .....++.++.. .+.+.++..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~-~~l~~l~-~~~~~~--d~~~~~~fid~~-------~Ll~~L~~a 76 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF-WKLNNLS-TKDDAW--QYVQNSYFFELP-------DALEKIQDA 76 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH-hhccccc-chhhHH--hcCCcEEEEEHH-------HHHHHHHHH
Confidence 33444555666899999999999999999999873 1110000 000000 000012222221 111222222
Q ss_pred HHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742 450 RDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 450 ~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~ 529 (629)
... .....+|||||+..-..... . ..+. + .....+.++|++||..+.|.+++++++..+|.
T Consensus 77 ~~~-----~~~~dlLIIDd~G~~~~~~~--w--h~~~--------~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 77 IDN-----DYRIPLIIFDDAGIWLSKYV--W--YEDY--------M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred Hhc-----CCCCCEEEEeCCchhhcccc--h--hhhc--------c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 211 11224899999654321100 0 0000 0 01123567889999999999999999999887
Q ss_pred H
Q 036742 530 Q 530 (629)
Q Consensus 530 ~ 530 (629)
.
T Consensus 138 ~ 138 (226)
T PHA00729 138 E 138 (226)
T ss_pred h
Confidence 6
No 256
>PRK05629 hypothetical protein; Validated
Probab=98.36 E-value=0.00013 Score=77.60 Aligned_cols=157 Identities=11% Similarity=0.040 Sum_probs=112.9
Q ss_pred CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHhhcceEeeccCCCHHHHHHHHHHHHHhcC
Q 036742 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVKTHCKVIKVDPPVTHEIMEVLIQIARKED 536 (629)
Q Consensus 460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~keg 536 (629)
..++|+++..+.........+...+..+++.+.+|+++..... +...|+..+.+++|.++...++..++...+.+.|
T Consensus 64 ~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g 143 (318)
T PRK05629 64 EDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHG 143 (318)
T ss_pred CceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 4579999998776555566777788777777777777754322 3446777888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH--------HHHHHHHHhcCCChHHHHHHHHH
Q 036742 537 FDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV--------LIELAAEILADPSPKRLVMVRGK 608 (629)
Q Consensus 537 l~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~--------l~ei~~~il~~~s~~~L~~ir~k 608 (629)
+.+++++++.|++.+++|+..+-+-|+.+... ..+..+..+++.+ +.+++..++.++....+ ..
T Consensus 144 ~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~----~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al----~~ 215 (318)
T PRK05629 144 VRPTPDVVHALLEGVGSDLRELASAISQLVED----TQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAV----AS 215 (318)
T ss_pred CCCCHHHHHHHHHHHCccHHHHHHHHHHHHhc----CCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHH----HH
Confidence 99999999999999999999999999976542 1223333444443 35566666665543333 33
Q ss_pred HHHHHHcCCCHHHHHH
Q 036742 609 IQKLLAEFVHPKLILL 624 (629)
Q Consensus 609 ly~lL~~~i~~~~i~~ 624 (629)
+..++..+.+|-.|+-
T Consensus 216 l~~l~~~g~~pi~il~ 231 (318)
T PRK05629 216 TRRALQLGVSPVALAA 231 (318)
T ss_pred HHHHHHcCCCcHHHHH
Confidence 4456666666655543
No 257
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.35 E-value=1.5e-05 Score=87.74 Aligned_cols=191 Identities=17% Similarity=0.173 Sum_probs=113.6
Q ss_pred cccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742 359 GFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA 436 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~ 436 (629)
.++|.......+...+. ......++|+|.+|+||+++|+++....... ...++.++|....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~-----------------~~~~i~~~c~~~~ 202 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS-----------------EKPLVTLNCAALN 202 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCC-----------------CCCeeeeeCCCCC
Confidence 35555444433333322 2223468999999999999999998753211 1236788885332
Q ss_pred hhHHHHHHH-HHHHHHHhcc--------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEE
Q 036742 437 NAKYALMGL-VKEIRDNLAI--------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILC 496 (629)
Q Consensus 437 ~~k~~l~~~-lrei~~~~~~--------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILi 496 (629)
. . .+... +......+.. .....+.+|||||||.|....|..|++.++... .++++|++
T Consensus 203 ~-~-~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (441)
T PRK10365 203 E-S-LLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAA 280 (441)
T ss_pred H-H-HHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEe
Confidence 1 1 11111 1111111110 011234599999999999999999999987532 24567877
Q ss_pred ecCCc-------cchHHHhhcceE--eeccCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHHc-cCCHHH
Q 036742 497 CEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIMEV----LIQIARKED---FDLSMTFAAKIATKA-KQNLRK 557 (629)
Q Consensus 497 tN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~i----L~~i~~keg---l~is~e~L~~Ia~~s-~GDiR~ 557 (629)
++... .+.+.|..|+.. +.++|+-. +++..+ |..++.+.+ ..++++++..|.... .||+|.
T Consensus 281 t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~re 360 (441)
T PRK10365 281 THRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 (441)
T ss_pred CCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHH
Confidence 76542 244555666544 44444432 233333 333333322 347999999999886 799999
Q ss_pred HHHHHHHHHhc
Q 036742 558 AIMALEACKAL 568 (629)
Q Consensus 558 AInlLq~~~~~ 568 (629)
+.+.++.+...
T Consensus 361 L~~~~~~~~~~ 371 (441)
T PRK10365 361 LENAVERAVVL 371 (441)
T ss_pred HHHHHHHHHHh
Confidence 99999986653
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.31 E-value=2.7e-06 Score=88.05 Aligned_cols=97 Identities=13% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhcc--
Q 036742 378 NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAI-- 455 (629)
Q Consensus 378 ~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~-- 455 (629)
...+++|+||||+|||+||-||++++...+. .++.+... +++.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~-----------------sv~f~~~~----------el~~~Lk~~~~~~~ 156 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI-----------------SVLFITAP----------DLLSKLKAAFDEGR 156 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC-----------------eEEEEEHH----------HHHHHHHHHHhcCc
Confidence 3458999999999999999999999863222 25555443 122222221111
Q ss_pred -----Cc-CCCCeEEEEEccchh--hHHHHHHHHHHHhc-cCCCcEEEEEecCCcc
Q 036742 456 -----TP-EVSNAMIVIYEVDKA--AEHIQYLIKWIMDG-YTDSCKLILCCEDDVD 502 (629)
Q Consensus 456 -----~~-~~~~kVIIIDEID~L--s~~~q~aLlrilEe-~~~~~~~ILitN~~~~ 502 (629)
.. -....||||||+... +....+.+..++.. +..... |+|+|.+..
T Consensus 157 ~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~ 211 (254)
T COG1484 157 LEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFG 211 (254)
T ss_pred hHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecCCChH
Confidence 00 011239999999886 44445555555543 333334 888886543
No 259
>PRK04132 replication factor C small subunit; Provisional
Probab=98.30 E-value=3.2e-07 Score=108.27 Aligned_cols=52 Identities=33% Similarity=0.604 Sum_probs=48.7
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHH
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRAL 395 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtL 395 (629)
+..+|++||||++|+||+||+.+++.|+.++..+.++|+||+||||+||+..
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 3568999999999999999999999999999999999999999999999754
No 260
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.27 E-value=1.3e-05 Score=91.87 Aligned_cols=210 Identities=12% Similarity=0.067 Sum_probs=122.7
Q ss_pred cHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch---hh
Q 036742 363 HRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA---NA 438 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~---~~ 438 (629)
+++++..|.=..... .+.+++|.|+.|+||++++++++..|-....+. -+..+++..+ +.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r----------------~~p~~~t~~~L~Gg~ 71 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLR----------------RLPPGIADDRLLGGL 71 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcc----------------cCCCCCcHHHccCCc
Confidence 344444443333343 567899999999999999999998763211100 1112222111 11
Q ss_pred HHHHHHHHHHHHHHh--ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCC-----------cEEEEEecCC-----
Q 036742 439 KYALMGLVKEIRDNL--AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDS-----------CKLILCCEDD----- 500 (629)
Q Consensus 439 k~~l~~~lrei~~~~--~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~-----------~~~ILitN~~----- 500 (629)
+ +...++.-...+ .......+.||||||+..+....+++|+..|+...-. .+|+|++...
T Consensus 72 D--l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~ 149 (584)
T PRK13406 72 D--LAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED 149 (584)
T ss_pred h--HHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc
Confidence 0 011111100000 0011112459999999999999999999999864311 2455555322
Q ss_pred ccchHHHhhcc-eEeeccCCCHHHHH-------HHHHHHHHhcCCCCCHHHHHHHHHHcc--C--CHHHHHHHHHHHHhc
Q 036742 501 VDIIESVKTHC-KVIKVDPPVTHEIM-------EVLIQIARKEDFDLSMTFAAKIATKAK--Q--NLRKAIMALEACKAL 568 (629)
Q Consensus 501 ~~I~~aLrSR~-~~I~F~ppt~eei~-------~iL~~i~~kegl~is~e~L~~Ia~~s~--G--DiR~AInlLq~~~~~ 568 (629)
..+.++|..|| +.+.+..++..+.. .++.....-.++.++++++.++++.+. | ..|-.+.++..+...
T Consensus 150 ~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~ 229 (584)
T PRK13406 150 ERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAA 229 (584)
T ss_pred cCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Confidence 23888999999 46777777655432 122211122468899999998876542 2 668888888877666
Q ss_pred CCCCCCCCCCchhHHHHHHHHH
Q 036742 569 NYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 569 ~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
+.--..+...+.++.+++.-+.
T Consensus 230 AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 230 AALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH
Confidence 5544555666666665555443
No 261
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.27 E-value=2.9e-05 Score=88.17 Aligned_cols=146 Identities=13% Similarity=0.174 Sum_probs=85.0
Q ss_pred cccccHHHHHHHHHHHHc---------CCCC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccccccccCCc
Q 036742 359 GFICHRHEAQLLKELVVD---------GNCP---HILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLVPVASSA 425 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~~---------g~~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~~i~sS~ 425 (629)
.|.|++++++-|.=.|-. |+++ ||||+|.||||||.+.+.+++.+- .+.+- .+.+ ...+
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p-Rg~yTSGkGs-------SavG 501 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP-RGVYTSGKGS-------SAVG 501 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC-cceeecCCcc-------chhc
Confidence 678899987655444432 2222 799999999999999999998752 21100 0000 0001
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------CCcE
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DSCK 492 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~~~ 492 (629)
...++.-. ..+ ++++......--..+.|..|||+|+|+....+.|...||.-+ ..+.
T Consensus 502 LTayVtrd-~dt---------kqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 502 LTAYVTKD-PDT---------RQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred ceeeEEec-Ccc---------ceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 11111110 001 011100000111234599999999999999999999998533 4445
Q ss_pred EEEEecCCc-------------cchHHHhhcceE--eeccCCCHH
Q 036742 493 LILCCEDDV-------------DIIESVKTHCKV--IKVDPPVTH 522 (629)
Q Consensus 493 ~ILitN~~~-------------~I~~aLrSR~~~--I~F~ppt~e 522 (629)
|+.++|... .|.++|.|||-. +.|.+++..
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 777777321 157899999953 556777655
No 262
>PHA02774 E1; Provisional
Probab=98.26 E-value=6.2e-06 Score=93.20 Aligned_cols=118 Identities=15% Similarity=0.223 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742 365 HEAQLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM 443 (629)
Q Consensus 365 ~~~~~Lk~~L~~g~~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~ 443 (629)
.....|+.|++.... ..++|+||||||||++|.+|++.+.|.. +..+|...
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~v-------------------i~fvN~~s--------- 470 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKV-------------------ISFVNSKS--------- 470 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCE-------------------EEEEECcc---------
Confidence 345677788765432 4799999999999999999999985432 23344311
Q ss_pred HHHHHHHHHhccCcCCCCeEEEEEccchh-hHHHHHHHHHHHhccC-------------CCcEEEEEecCCcc---chHH
Q 036742 444 GLVKEIRDNLAITPEVSNAMIVIYEVDKA-AEHIQYLIKWIMDGYT-------------DSCKLILCCEDDVD---IIES 506 (629)
Q Consensus 444 ~~lrei~~~~~~~~~~~~kVIIIDEID~L-s~~~q~aLlrilEe~~-------------~~~~~ILitN~~~~---I~~a 506 (629)
.|-+..-...+|++|||+-.- ..-....|+.+++... ...++|+|+|..-. -...
T Consensus 471 --------~FwLqpl~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~y 542 (613)
T PHA02774 471 --------HFWLQPLADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKY 542 (613)
T ss_pred --------ccccchhccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHH
Confidence 111111122359999999322 2334446777777542 22468999986443 2467
Q ss_pred HhhcceEeeccC
Q 036742 507 VKTHCKVIKVDP 518 (629)
Q Consensus 507 LrSR~~~I~F~p 518 (629)
|.||+..+.|+.
T Consensus 543 L~sRi~~f~F~n 554 (613)
T PHA02774 543 LHSRITVFEFPN 554 (613)
T ss_pred hhhhEEEEECCC
Confidence 889999999864
No 263
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.23 E-value=6.8e-05 Score=76.91 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=114.7
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc--cchhh--
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN--LQANA-- 438 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas--~~~~~-- 438 (629)
+.+++..+...+..+.. -+.++|+-|+|||.+.+++...+.+... + ++.+..- ...++
T Consensus 36 h~e~l~~l~~~i~d~qg-~~~vtGevGsGKTv~~Ral~~s~~~d~~-------~----------~v~i~~~~~s~~~~~~ 97 (269)
T COG3267 36 HNEALLMLHAAIADGQG-ILAVTGEVGSGKTVLRRALLASLNEDQV-------A----------VVVIDKPTLSDATLLE 97 (269)
T ss_pred hhHHHHHHHHHHhcCCc-eEEEEecCCCchhHHHHHHHHhcCCCce-------E----------EEEecCcchhHHHHHH
Confidence 34466666666665542 4779999999999999977776544332 0 1222220 00010
Q ss_pred --------------HHHHHHHHHHHHHHhccCcCCCC-eEEEEEccchhhHHHHHHHHHHHhc---cCCCcEEEEEecC-
Q 036742 439 --------------KYALMGLVKEIRDNLAITPEVSN-AMIVIYEVDKAAEHIQYLIKWIMDG---YTDSCKLILCCED- 499 (629)
Q Consensus 439 --------------k~~l~~~lrei~~~~~~~~~~~~-kVIIIDEID~Ls~~~q~aLlrilEe---~~~~~~~ILitN~- 499 (629)
...+...-+.+.. ....++. .++++||++.+...+.++|+.+.+. +.+...++++...
T Consensus 98 ai~~~l~~~p~~~~~~~~e~~~~~L~a---l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~ 174 (269)
T COG3267 98 AIVADLESQPKVNVNAVLEQIDRELAA---LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPK 174 (269)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHH---HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcc
Confidence 0011111111111 1122333 5999999999999999999988763 3333446776532
Q ss_pred ----Ccc-chHHHhhcceE-eeccCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742 500 ----DVD-IIESVKTHCKV-IKVDPPVTHEIMEVLIQIARKEDF---DLSMTFAAKIATKAKQNLRKAIMALEA 564 (629)
Q Consensus 500 ----~~~-I~~aLrSR~~~-I~F~ppt~eei~~iL~~i~~kegl---~is~e~L~~Ia~~s~GDiR~AInlLq~ 564 (629)
+.. .+..+..||.+ |...|++.++...+|+..++..+. -++++.+..|...+.|-.|...+.+..
T Consensus 175 L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 175 LRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred cchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 111 35677789987 999999999999999888776544 247889999999999955555544443
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.23 E-value=8.7e-06 Score=78.18 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=74.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCC--------CCCCcccccccc--CCcceE---EEecccch-hhHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWN--------EKWPTQVLVPVA--SSAHHV---ELNVNLQA-NAKYALMGLV 446 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~--------~~~~~~v~~~i~--sS~~vl---eInas~~~-~~k~~l~~~l 446 (629)
.++++|+||+||||++.-++..|...++.. +....++.|.+. .++.-. ..+.+..+ +...+..+.+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHH
Confidence 488999999999999999999885443211 111112222211 111111 11111100 1111122333
Q ss_pred HHHHHHhccCcCCCCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecCCc--cchHHHhhcceEeeccCCCH
Q 036742 447 KEIRDNLAITPEVSNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCEDDV--DIIESVKTHCKVIKVDPPVT 521 (629)
Q Consensus 447 rei~~~~~~~~~~~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~~~--~I~~aLrSR~~~I~F~ppt~ 521 (629)
.++.-.........-.|||||||..| +.....++..++. ...++|.+-+..+ -+...++.+..++-| +++
T Consensus 87 e~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~P~v~~ik~~~~v~v~--lt~ 161 (179)
T COG1618 87 EEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRHPLVQRIKKLGGVYVF--LTP 161 (179)
T ss_pred HHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCChHHHHhhhcCCEEEE--Ecc
Confidence 32221100000001249999999998 5566666666665 4455777766543 367788888777665 444
Q ss_pred HHHHHHHHHHH
Q 036742 522 HEIMEVLIQIA 532 (629)
Q Consensus 522 eei~~iL~~i~ 532 (629)
+..-.++.+++
T Consensus 162 ~NR~~i~~~Il 172 (179)
T COG1618 162 ENRNRILNEIL 172 (179)
T ss_pred chhhHHHHHHH
Confidence 33334444443
No 265
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.22 E-value=8.3e-07 Score=86.29 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=39.6
Q ss_pred CeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecCC--ccchHHHhhc--ceEeeccCCCHHHHH
Q 036742 461 NAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCEDD--VDIIESVKTH--CKVIKVDPPVTHEIM 525 (629)
Q Consensus 461 ~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~~--~~I~~aLrSR--~~~I~F~ppt~eei~ 525 (629)
..+||||||..| .....+++..+++ +..++|.+-... ..+.+.+++| +.++.+.+-+.+.+.
T Consensus 96 ~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 96 SDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 349999999998 6677888888887 556677766554 3488999998 778887766554443
No 266
>PRK07914 hypothetical protein; Reviewed
Probab=98.20 E-value=0.00052 Score=73.22 Aligned_cols=160 Identities=9% Similarity=0.022 Sum_probs=114.8
Q ss_pred CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHhhc-ceEeeccCC-CHHHHHHHHHHHHHh
Q 036742 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVKTH-CKVIKVDPP-VTHEIMEVLIQIARK 534 (629)
Q Consensus 460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLrSR-~~~I~F~pp-t~eei~~iL~~i~~k 534 (629)
..+||+|++...+.....+.|..+++.++..+.+|++++.... +..+|+.. +.++.|.++ +..++..++...+.+
T Consensus 64 ~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~ 143 (320)
T PRK07914 64 EERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRS 143 (320)
T ss_pred CceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4569999998777666677888898888777777777543222 34466655 458899988 999999999999999
Q ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH--------HHHHHHHHhcCCChHHHHHHH
Q 036742 535 EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEV--------LIELAAEILADPSPKRLVMVR 606 (629)
Q Consensus 535 egl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~--------l~ei~~~il~~~s~~~L~~ir 606 (629)
.|+.++++++..|++.+++|+..+-+-|+.+.. + ..+..+..+++.+ +.++++.++.+.....+
T Consensus 144 ~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~--~--~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~---- 215 (320)
T PRK07914 144 LRVKVDDDTVTALLDAVGSDLRELASACSQLVA--D--TGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAA---- 215 (320)
T ss_pred cCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhc--C--CCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHH----
Confidence 999999999999999999999999999986543 1 1122333444333 35666666666544433
Q ss_pred HHHHHHHHcCCCHHHHHHHHh
Q 036742 607 GKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 607 ~kly~lL~~~i~~~~i~~~La 627 (629)
..+.+++..+.+|-.|+--|+
T Consensus 216 ~~l~~L~~~ge~p~~il~~l~ 236 (320)
T PRK07914 216 EALRWAMMRGEPHVVLADALA 236 (320)
T ss_pred HHHHHHHHCCCchHHHHHHHH
Confidence 335567777887777664443
No 267
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.17 E-value=1.7e-05 Score=89.00 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=78.9
Q ss_pred CcccccHHHHHHHHHHHHcCCCC------------eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 358 NGFICHRHEAQLLKELVVDGNCP------------HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~~p------------~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
-.|.|+++++..+.-.|-.|... |+||+|.|||||+-+.+.+++-.. -.+ +.....+
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~-RAV----------~tTGqGA 517 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP-RAV----------FTTGQGA 517 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCc-cee----------EeccCCc
Confidence 35779999998888888644211 699999999999999999887531 111 1111111
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-------------CCCcE
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-------------TDSCK 492 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-------------~~~~~ 492 (629)
.-+-+.++..+.. +.++..-.....--..+.|.+|||+|.|.......+...||.- ...|.
T Consensus 518 SavGLTa~v~KdP------vtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArct 591 (854)
T KOG0477|consen 518 SAVGLTAYVRKDP------VTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCT 591 (854)
T ss_pred cccceeEEEeeCC------ccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhh
Confidence 1222222211100 0011100000000112359999999999765554555545432 25677
Q ss_pred EEEEecC---Cc----------cchHHHhhcce
Q 036742 493 LILCCED---DV----------DIIESVKTHCK 512 (629)
Q Consensus 493 ~ILitN~---~~----------~I~~aLrSR~~ 512 (629)
+|+++|. .+ .+.++|.||+-
T Consensus 592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFD 624 (854)
T KOG0477|consen 592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFD 624 (854)
T ss_pred hheecCCCCCccCCccchhhccccccchhhhcc
Confidence 8888886 22 25689999974
No 268
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.15 E-value=9.1e-05 Score=75.73 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=84.8
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHH
Q 036742 368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK 447 (629)
Q Consensus 368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lr 447 (629)
..|-.++... -+..++||.|||||++++.+|+.+ |.. ++.+|++..... ..+..+++
T Consensus 23 ~~l~~al~~~--~~~~~~GpagtGKtetik~La~~l-G~~-------------------~~vfnc~~~~~~-~~l~ril~ 79 (231)
T PF12774_consen 23 LTLTQALSLN--LGGALSGPAGTGKTETIKDLARAL-GRF-------------------VVVFNCSEQMDY-QSLSRILK 79 (231)
T ss_dssp HHHHHHHCTT--TEEEEESSTTSSHHHHHHHHHHCT-T---------------------EEEEETTSSS-H-HHHHHHHH
T ss_pred HHHHHHhccC--CCCCCcCCCCCCchhHHHHHHHHh-CCe-------------------EEEecccccccH-HHHHHHHH
Confidence 3444455433 245689999999999999999986 554 577888765443 34556666
Q ss_pred HHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc-------c-------------CCCcEEEEEecC----Cccc
Q 036742 448 EIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG-------Y-------------TDSCKLILCCED----DVDI 503 (629)
Q Consensus 448 ei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe-------~-------------~~~~~~ILitN~----~~~I 503 (629)
.+... +.-+++||+++|..+....+-..+.. . ..++.+++|.|. ...+
T Consensus 80 G~~~~--------GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~L 151 (231)
T PF12774_consen 80 GLAQS--------GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSEL 151 (231)
T ss_dssp HHHHH--------T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S
T ss_pred HHhhc--------CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccC
Confidence 65543 34799999999987665554333221 1 134456677764 3458
Q ss_pred hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCC
Q 036742 504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFD 538 (629)
Q Consensus 504 ~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~ 538 (629)
++.|+.-+..+.+..|+...+.+++. ...|+.
T Consensus 152 P~nLk~lFRpvam~~PD~~~I~ei~L---~s~GF~ 183 (231)
T PF12774_consen 152 PENLKALFRPVAMMVPDLSLIAEILL---LSQGFK 183 (231)
T ss_dssp -HHHCTTEEEEE--S--HHHHHHHHH---HCCCTS
T ss_pred CHhHHHHhheeEEeCCCHHHHHHHHH---HHcCch
Confidence 99999999999999998877777664 456664
No 269
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.14 E-value=5.5e-06 Score=79.58 Aligned_cols=46 Identities=35% Similarity=0.587 Sum_probs=32.1
Q ss_pred cccccHHHHHHHHHHHH---cCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 359 GFICHRHEAQLLKELVV---DGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~---~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.++.++.|..++. .+..+.++|+|++|+|||++++.++..+.
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37899999999999993 33456899999999999999999888764
No 270
>PRK05907 hypothetical protein; Provisional
Probab=98.11 E-value=0.0013 Score=70.23 Aligned_cols=221 Identities=13% Similarity=0.110 Sum_probs=141.7
Q ss_pred HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHH
Q 036742 367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV 446 (629)
Q Consensus 367 ~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~l 446 (629)
+..+.+.++.|. |..++||..- -.....+...+.+... ..++..... +
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~-------------------~~fdg~~~~---------~ 54 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK-------------------SEFDGQGLL---------Q 54 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc-------------------ceecCCCCC---------H
Confidence 344555677787 8999999766 4445555444433321 111221111 1
Q ss_pred HHHHHHhccCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEE-EEecCCcc---chHHHhhcceEe----ecc
Q 036742 447 KEIRDNLAITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLI-LCCEDDVD---IIESVKTHCKVI----KVD 517 (629)
Q Consensus 447 rei~~~~~~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~I-LitN~~~~---I~~aLrSR~~~I----~F~ 517 (629)
.++...+...+-+ ..++|++.+.+.+.....+.|..+++.+++.+.+| ++.. .+. +...|.. ...+ .|.
T Consensus 55 ~~ii~~aetlPfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~-~d~~kkl~K~i~k-~~~v~~~~e~~ 132 (311)
T PRK05907 55 QELLSWTEHFGLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK-QECFSSLSKKLSS-ALCLSLFGEWF 132 (311)
T ss_pred HHHHHHHhcCCcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec-ccHHHHHHHHHhh-cceeccccccC
Confidence 2333333333322 34577888777776666778999999888865555 5552 222 2233432 4444 899
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH--------HHH
Q 036742 518 PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKA-KQNLRKAIMALEACKALNYPFADDQPIPLGWEEV--------LIE 588 (629)
Q Consensus 518 ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s-~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~--------l~e 588 (629)
++...++..++...+.+.|+.++++++..+++.+ ++|+..+.+-|+.+.+... .....+..+++.+ +++
T Consensus 133 ~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g--~~~~It~e~V~~lv~~s~e~nIF~ 210 (311)
T PRK05907 133 ADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMG--KKESLEASDIQSFVVKKEAASLWK 210 (311)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcC--CCCeECHHHHHHHhcCcccccHHH
Confidence 9999999999999999999999999999999999 6999999999998776421 1122333444443 466
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHc-CCCHHHHHHHHh
Q 036742 589 LAAEILADPSPKRLVMVRGKIQKLLAE-FVHPKLILLVMH 627 (629)
Q Consensus 589 i~~~il~~~s~~~L~~ir~kly~lL~~-~i~~~~i~~~La 627 (629)
+...+..++....+ .-+++++.. +..|-.|+--|+
T Consensus 211 L~dai~~~~~~~Al----~il~~Ll~~~ge~p~~ILall~ 246 (311)
T PRK05907 211 LRDALLRRDRVEGH----SLLRSLLSDMGEDPLGIIAFLR 246 (311)
T ss_pred HHHHHHccCHHHHH----HHHHHHHHhcCCChHHHHHHHH
Confidence 67766666544433 456678888 888887766554
No 271
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=98.07 E-value=0.0012 Score=70.60 Aligned_cols=222 Identities=15% Similarity=0.155 Sum_probs=138.0
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHH
Q 036742 368 QLLKELVVDGNC-PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLV 446 (629)
Q Consensus 368 ~~Lk~~L~~g~~-p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~l 446 (629)
+.|...++.|.. |..||||.-=--.-..+..|.+.+..... . .. +..+. ..+
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-~----------------~~-~~~~~---------~~~ 56 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE-L----------------KT-LYFDE---------YDF 56 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH-h----------------hh-hchhh---------ccH
Confidence 356666777765 56779997766666666666655432211 0 00 00110 012
Q ss_pred HHHHHHhccCcCC-CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc---chHHHhhc--ceEeeccCCC
Q 036742 447 KEIRDNLAITPEV-SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD---IIESVKTH--CKVIKVDPPV 520 (629)
Q Consensus 447 rei~~~~~~~~~~-~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~---I~~aLrSR--~~~I~F~ppt 520 (629)
.++...+...+-+ ..+||+|.+...+.......|...++.+++.+.+|++...... +-..+... ...+.|.+++
T Consensus 57 ~~i~~~~~t~plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~ 136 (328)
T PRK08487 57 EQAKDFLSQSSLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPN 136 (328)
T ss_pred HHHHHHHhcccccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCC
Confidence 3333333333322 3458898887666555556777777776655545543333221 11222222 4578999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH--------HHHHHH
Q 036742 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL--------IELAAE 592 (629)
Q Consensus 521 ~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l--------~ei~~~ 592 (629)
..++..++...+.+.|+.++++++..|+..+++|+..+.+-|+.+.+... ..+..+++.++ .+++..
T Consensus 137 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~-----~It~edV~~~v~~~~e~~vF~l~da 211 (328)
T PRK08487 137 AREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE-----PITLKDIQELVFGLGSVSFEDFFEK 211 (328)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC-----CCCHHHHHHHhcccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999998877532 23334444433 556666
Q ss_pred HhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 593 ILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 593 il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
++.+.. ....+..++..+.+|-.|+--|+
T Consensus 212 i~~g~~------a~~~l~~L~~~g~~pi~Il~~L~ 240 (328)
T PRK08487 212 LLNKKD------IKDDLEKLLEEGFNEIALLNSLE 240 (328)
T ss_pred HHCCCc------HHHHHHHHHHCCCCHHHHHHHHH
Confidence 666552 22345567777777766655443
No 272
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.06 E-value=0.00041 Score=74.19 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=114.2
Q ss_pred CCCcccccHHHHHHHHHHHHcC-C-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 356 SLNGFICHRHEAQLLKELVVDG-N-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~g-~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
-|+.|++.....+.+..-.++- - -..+||.|..||||-.+|++.-.. .. ..+..++-+||.
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~--S~---------------R~~~pFlalNCA 264 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLA--SP---------------RHSKPFLALNCA 264 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhc--Cc---------------ccCCCeeEeecC
Confidence 4677777655444333222211 1 125999999999999999954322 11 123346778874
Q ss_pred cchhhHHHHHHHHHHHHH---HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEEecC
Q 036742 434 LQANAKYALMGLVKEIRD---NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILCCED 499 (629)
Q Consensus 434 ~~~~~k~~l~~~lrei~~---~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILitN~ 499 (629)
.-.... .-.+++..... .........+..+|+|||..|++..|..|++++...+ -++++|++|..
T Consensus 265 ~lPe~~-aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~ 343 (511)
T COG3283 265 SLPEDA-AESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQV 343 (511)
T ss_pred CCchhH-hHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccc
Confidence 211110 00111111100 0000001123489999999999999999999997543 33567777654
Q ss_pred C-------ccchHHHhhcceEeeccCCCHHH--------HHHHHHHHHHhcCC---CCCHHHHHHHHHH-ccCCHHHHHH
Q 036742 500 D-------VDIIESVKTHCKVIKVDPPVTHE--------IMEVLIQIARKEDF---DLSMTFAAKIATK-AKQNLRKAIM 560 (629)
Q Consensus 500 ~-------~~I~~aLrSR~~~I~F~ppt~ee--------i~~iL~~i~~kegl---~is~e~L~~Ia~~-s~GDiR~AIn 560 (629)
. ..+-+.|--|..++.+.-|+-.+ ..-.+.++|.+.++ +++++.+.++.+. ..|++|+.-|
T Consensus 344 nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N 423 (511)
T COG3283 344 NLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKN 423 (511)
T ss_pred cHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHH
Confidence 3 12456677787766555444332 22356677777776 4577888887765 5799999999
Q ss_pred HHHHHHh
Q 036742 561 ALEACKA 567 (629)
Q Consensus 561 lLq~~~~ 567 (629)
.+-.++.
T Consensus 424 ~iyRA~s 430 (511)
T COG3283 424 AIYRALT 430 (511)
T ss_pred HHHHHHH
Confidence 9865543
No 273
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.4e-05 Score=83.96 Aligned_cols=158 Identities=17% Similarity=0.248 Sum_probs=85.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE-ecccchhh--HHHHHHHHHHHHHHhccCc
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL-NVNLQANA--KYALMGLVKEIRDNLAITP 457 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI-nas~~~~~--k~~l~~~lrei~~~~~~~~ 457 (629)
.+||+||||+|||+||-.+|..- ... ++.+ .+.+..|. ...... +.+.|..+.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S-~FP-------------------FvKiiSpe~miG~sEsaKc~~----i~k~F~DAY 595 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS-DFP-------------------FVKIISPEDMIGLSESAKCAH----IKKIFEDAY 595 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc-CCC-------------------eEEEeChHHccCccHHHHHHH----HHHHHHHhh
Confidence 79999999999999999999873 322 2333 33221111 111111 112222222
Q ss_pred CCCCeEEEEEccchh----------hHHHHHHHHHHHhccC-CC-cEEEEEecCCccchHH--Hhhcc-eEeeccCCCH-
Q 036742 458 EVSNAMIVIYEVDKA----------AEHIQYLIKWIMDGYT-DS-CKLILCCEDDVDIIES--VKTHC-KVIKVDPPVT- 521 (629)
Q Consensus 458 ~~~~kVIIIDEID~L----------s~~~q~aLlrilEe~~-~~-~~~ILitN~~~~I~~a--LrSR~-~~I~F~ppt~- 521 (629)
...-.||+||++++| +.-...+|+-++.+.+ .. ..+|++|.....++.. +..-+ ..+.++.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 222249999999998 2234455555555433 33 3455655544333321 22222 3577777765
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-----CHHHHHHHHHHHHh
Q 036742 522 HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-----NLRKAIMALEACKA 567 (629)
Q Consensus 522 eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-----DiR~AInlLq~~~~ 567 (629)
+++.++|... ++ +.++....+++.-.+ -+.+.+.+++.+..
T Consensus 676 ~~~~~vl~~~----n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 676 EQLLEVLEEL----NI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred HHHHHHHHHc----cC-CCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 6676776543 22 344445554443322 37888888887764
No 274
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.02 E-value=1.9e-05 Score=70.81 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 036742 382 ILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
|+|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999875
No 275
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.00 E-value=0.00052 Score=82.32 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=110.6
Q ss_pred CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEec
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNV 432 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIna 432 (629)
.|..-.+++-.+.+.+.|... ...+-++|+||+|.||||++..++... +. +.-++.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-~~--------------------~~w~~l 64 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-NN--------------------LGWYSL 64 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-CC--------------------eEEEec
Confidence 466667888888777766532 345679999999999999999888653 21 111111
Q ss_pred --ccch--hh-HHHH--------------------------HHHHHHHHHHhccCcCCCCeEEEEEccchhh-HHHHHHH
Q 036742 433 --NLQA--NA-KYAL--------------------------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-EHIQYLI 480 (629)
Q Consensus 433 --s~~~--~~-k~~l--------------------------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-~~~q~aL 480 (629)
.+.. .+ .+++ ...+..+..... ......||||||++.+. ......|
T Consensus 65 ~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~lvlDD~h~~~~~~~~~~l 142 (903)
T PRK04841 65 DESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELA--DWHQPLYLVIDDYHLITNPEIHEAM 142 (903)
T ss_pred CcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHh--cCCCCEEEEEeCcCcCCChHHHHHH
Confidence 1100 00 0000 011111111111 11234599999999996 4445677
Q ss_pred HHHHhccCCCcEEEEEecCCccc-hHHHhhcc--eEeecc--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Q 036742 481 KWIMDGYTDSCKLILCCEDDVDI-IESVKTHC--KVIKVD--PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNL 555 (629)
Q Consensus 481 lrilEe~~~~~~~ILitN~~~~I-~~aLrSR~--~~I~F~--ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDi 555 (629)
..++...+....+|+++.....+ ...++-+- ..+... +++.+|....+... .+..++++.+..|.+.+.|.+
T Consensus 143 ~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 143 RFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWA 219 (903)
T ss_pred HHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChH
Confidence 77787777888888887653333 23343333 334444 88999999888643 356789999999999999988
Q ss_pred HHHH
Q 036742 556 RKAI 559 (629)
Q Consensus 556 R~AI 559 (629)
--+-
T Consensus 220 ~~l~ 223 (903)
T PRK04841 220 TALQ 223 (903)
T ss_pred HHHH
Confidence 5543
No 276
>PF14516 AAA_35: AAA-like domain
Probab=97.91 E-value=0.0013 Score=70.68 Aligned_cols=184 Identities=17% Similarity=0.146 Sum_probs=103.9
Q ss_pred cccHHHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc----
Q 036742 361 ICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ---- 435 (629)
Q Consensus 361 iG~e~~~~~Lk~~L~~-g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~---- 435 (629)
|..+.+-+.+.+.+.. |. .+.|+||..+|||++...+...+...++ .++.++....
T Consensus 14 i~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~~~-----------------~~v~id~~~~~~~~ 74 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQGY-----------------RCVYIDLQQLGSAI 74 (331)
T ss_pred cCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHCCC-----------------EEEEEEeecCCCcc
Confidence 4445455556555554 55 5899999999999999999988754332 1233332110
Q ss_pred -hhhHHHHHHHHHHHHH---------------------------HhccCcCCCCeEEEEEccchhhH------HHHHHHH
Q 036742 436 -ANAKYALMGLVKEIRD---------------------------NLAITPEVSNAMIVIYEVDKAAE------HIQYLIK 481 (629)
Q Consensus 436 -~~~k~~l~~~lrei~~---------------------------~~~~~~~~~~kVIIIDEID~Ls~------~~q~aLl 481 (629)
......+..+...+.. .+.......+-||+|||||.+.. +....|+
T Consensus 75 ~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR 154 (331)
T PF14516_consen 75 FSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLR 154 (331)
T ss_pred cCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHH
Confidence 0001111111111111 11111112334999999999853 3455555
Q ss_pred HHHhccC-----CCcEEEEEecCCccchHHH-h---hcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc
Q 036742 482 WIMDGYT-----DSCKLILCCEDDVDIIESV-K---THCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK 552 (629)
Q Consensus 482 rilEe~~-----~~~~~ILitN~~~~I~~aL-r---SR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~ 552 (629)
...+... ....+|++......+...+ . ..+..+.++.++.+|+...+.. .+..+++..++.|...++
T Consensus 155 ~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tg 230 (331)
T PF14516_consen 155 SWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTG 230 (331)
T ss_pred HHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHC
Confidence 5555322 2233555443222222111 1 3345688999999998776654 456788888999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 036742 553 QNLRKAIMALEACKA 567 (629)
Q Consensus 553 GDiR~AInlLq~~~~ 567 (629)
|..--.-.++..+..
T Consensus 231 GhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 231 GHPYLVQKACYLLVE 245 (331)
T ss_pred CCHHHHHHHHHHHHH
Confidence 988655555555543
No 277
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.88 E-value=0.00012 Score=72.68 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742 364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM 443 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~ 443 (629)
++..+.+..++..+ -+.+++.||||||||++++.++..+..... .++-+.+. ..... .+.
T Consensus 4 ~~Q~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~-----------------~v~~~apT-~~Aa~-~L~ 63 (196)
T PF13604_consen 4 EEQREAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAGK-----------------RVIGLAPT-NKAAK-ELR 63 (196)
T ss_dssp HHHHHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT-------------------EEEEESS-HHHHH-HHH
T ss_pred HHHHHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCCC-----------------eEEEECCc-HHHHH-HHH
Confidence 34455566666654 346889999999999999999887754321 13433332 21111 111
Q ss_pred HHHH----HHHHHhccCc---------CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 444 GLVK----EIRDNLAITP---------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 444 ~~lr----ei~~~~~~~~---------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
+... .+...+.... .....||||||+..+.......|+..+.. .++++||+....
T Consensus 64 ~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 64 EKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp HHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred HhhCcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 1100 0001111000 12235999999999998888777777664 467899988754
No 278
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=97.86 E-value=0.00021 Score=68.49 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=80.5
Q ss_pred CeEEEEEcc----chhhHHHHHHHHHHHhccCCCcEEEEEec-CCc---cchHHHhhcceEeeccCCCHHHHHHHHHHHH
Q 036742 461 NAMIVIYEV----DKAAEHIQYLIKWIMDGYTDSCKLILCCE-DDV---DIIESVKTHCKVIKVDPPVTHEIMEVLIQIA 532 (629)
Q Consensus 461 ~kVIIIDEI----D~Ls~~~q~aLlrilEe~~~~~~~ILitN-~~~---~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~ 532 (629)
.+||+|.++ +.........|...+..+..++.+|+.++ ..+ .+...+...+.++.|.++...++..+++..+
T Consensus 58 ~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~ 137 (172)
T PF06144_consen 58 KKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERA 137 (172)
T ss_dssp EEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHH
T ss_pred CeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHH
Confidence 469999998 55667788889999998889999999888 333 2567778888999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 533 RKEDFDLSMTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 533 ~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
.+.|+.+++++++.|++..++|++.+.+-|+.++
T Consensus 138 ~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 138 KKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998765
No 279
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.85 E-value=0.0012 Score=72.92 Aligned_cols=130 Identities=17% Similarity=0.202 Sum_probs=83.7
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742 369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448 (629)
Q Consensus 369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre 448 (629)
.+.+.+..... .++|+||-+|||||+++.+.+.+... .++++-.+.......+.+.++.
T Consensus 28 ~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~--------------------~iy~~~~d~~~~~~~l~d~~~~ 86 (398)
T COG1373 28 RLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE--------------------IIYINFDDLRLDRIELLDLLRA 86 (398)
T ss_pred HHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc--------------------eEEEEecchhcchhhHHHHHHH
Confidence 33344433332 78999999999999998887764221 3555554443333333455555
Q ss_pred HHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc----chHHHhhcceEeeccCCCHHHH
Q 036742 449 IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD----IIESVKTHCKVIKVDPPVTHEI 524 (629)
Q Consensus 449 i~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~----I~~aLrSR~~~I~F~ppt~eei 524 (629)
....+.. ....||||||+.+.. -+.++..+.+.... .|++++..... +-+.|.-|...+.+.|++-.|.
T Consensus 87 ~~~~~~~----~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Ef 159 (398)
T COG1373 87 YIELKER----EKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREF 159 (398)
T ss_pred HHHhhcc----CCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHH
Confidence 5444433 345899999999854 44556666664433 56666554333 4677888989999999999887
Q ss_pred HH
Q 036742 525 ME 526 (629)
Q Consensus 525 ~~ 526 (629)
..
T Consensus 160 l~ 161 (398)
T COG1373 160 LK 161 (398)
T ss_pred Hh
Confidence 64
No 280
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.85 E-value=6.6e-05 Score=85.14 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=107.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH-HHHHHHHHHHhccCc--
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL-MGLVKEIRDNLAITP-- 457 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l-~~~lrei~~~~~~~~-- 457 (629)
++|++|.+||||-.+|++|-..-.. .+.++-+||..-.. ..+ .++|......|....
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~------------------~gpfvAvNCaAip~--~liesELFGy~~GafTga~~k 397 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEA------------------AGPFVAVNCAAIPE--ALIESELFGYVAGAFTGARRK 397 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccc------------------cCCeEEEEeccchH--HhhhHHHhccCccccccchhc
Confidence 5999999999999999999876322 22367777742211 111 123333333332211
Q ss_pred -------CCCCeEEEEEccchhhHHHHHHHHHHHhccC----------CCcEEEEEecCCc-------cchHHHhhcce-
Q 036742 458 -------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT----------DSCKLILCCEDDV-------DIIESVKTHCK- 512 (629)
Q Consensus 458 -------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~----------~~~~~ILitN~~~-------~I~~aLrSR~~- 512 (629)
...+..+|+|||..|.-+.|..|++++++.. -.++||.+|+..- .+-+.|--|+.
T Consensus 398 G~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 398 GYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred cccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcC
Confidence 1123499999999999999999999998642 2234666666531 24566666764
Q ss_pred -EeeccCCCHH-HHHHHHHHHHHh---cCCCCCHHHHHHHHH-HccCCHHHHHHHHHHHHhcCC
Q 036742 513 -VIKVDPPVTH-EIMEVLIQIARK---EDFDLSMTFAAKIAT-KAKQNLRKAIMALEACKALNY 570 (629)
Q Consensus 513 -~I~F~ppt~e-ei~~iL~~i~~k---egl~is~e~L~~Ia~-~s~GDiR~AInlLq~~~~~~~ 570 (629)
+|.++++-.. +....|.++..+ ..+.++++++..|.. ...|++|...|.|+.+++...
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 4555554321 222333333333 447889999888654 467999999999998776543
No 281
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.77 E-value=3.3e-05 Score=89.36 Aligned_cols=134 Identities=15% Similarity=0.206 Sum_probs=82.1
Q ss_pred CcccccHHHHHHHHHHHHcCC---------C---CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 358 NGFICHRHEAQLLKELVVDGN---------C---PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~---------~---p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
-.|.|++++++.|.-.|-.|. . =||||.|.||+||+.|.+.+++.+- ..++- .....
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP-r~vyt----------sgkgs 354 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP-RGVYT----------SGKGS 354 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC-ceEEE----------ccccc
Confidence 578899998887776664332 1 1899999999999999999998642 11100 00000
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhccCc----CCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLAITP----EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------- 488 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~----~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------- 488 (629)
...-+.++..+. .. ...+.+.. ...+.|++|||+|.|......+|...||..+
T Consensus 355 s~~GLTAav~rd-------~~---tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 355 SAAGLTAAVVRD-------KV---TGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred cccCceeEEEEc-------cC---CCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecc
Confidence 011112211110 00 00111111 1234599999999999999999999999653
Q ss_pred CCcEEEEEecCCc-------------cchHHHhhcce
Q 036742 489 DSCKLILCCEDDV-------------DIIESVKTHCK 512 (629)
Q Consensus 489 ~~~~~ILitN~~~-------------~I~~aLrSR~~ 512 (629)
..|-++.+||... .+.++|.|||-
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFD 461 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFD 461 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCC
Confidence 3344667777643 15789999994
No 282
>PRK10536 hypothetical protein; Provisional
Probab=97.77 E-value=0.00026 Score=73.31 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 360 FICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 360 IiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
|.+.......+..++... ..+++.||+|||||+||.+++.+.
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 444555556666777664 478999999999999999999863
No 283
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.76 E-value=0.0001 Score=80.19 Aligned_cols=120 Identities=14% Similarity=0.227 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc---chhhHHHH--HHHHHHHHHHh
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL---QANAKYAL--MGLVKEIRDNL 453 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~---~~~~k~~l--~~~lrei~~~~ 453 (629)
.++++||||+|+|||.|.-++...+-.... . + +.+.... ........ .+-+..+....
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k--~-R--------------~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l 124 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRK--R-R--------------VHFHEFMLDVHSRLHQLRGQDDPLPQVADEL 124 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCcccc--c-c--------------ccccHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 458999999999999999999887633211 0 0 0000000 00000000 00011111111
Q ss_pred ccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc-cCCCcEEEEEecCCcc--------------chHHHhhcceEeeccC
Q 036742 454 AITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG-YTDSCKLILCCEDDVD--------------IIESVKTHCKVIKVDP 518 (629)
Q Consensus 454 ~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe-~~~~~~~ILitN~~~~--------------I~~aLrSR~~~I~F~p 518 (629)
. ....||+|||++--.....-.|.++++. +..++.+|+|+|.+.. .++.|..+|.++.+..
T Consensus 125 ~----~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~ 200 (362)
T PF03969_consen 125 A----KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDG 200 (362)
T ss_pred H----hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecC
Confidence 1 1224999999987755555555555552 3467788889987533 2456788998888876
Q ss_pred C
Q 036742 519 P 519 (629)
Q Consensus 519 p 519 (629)
.
T Consensus 201 ~ 201 (362)
T PF03969_consen 201 G 201 (362)
T ss_pred C
Confidence 5
No 284
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.76 E-value=0.00098 Score=73.27 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=69.0
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhc------cCCCcEEEEEecCCcc---chHHHhhcc-eEeeccCCCHHHHHHHHHHH
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDG------YTDSCKLILCCEDDVD---IIESVKTHC-KVIKVDPPVTHEIMEVLIQI 531 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe------~~~~~~~ILitN~~~~---I~~aLrSR~-~~I~F~ppt~eei~~iL~~i 531 (629)
.||+||.+..-... .+.++..+-+ -..-..||+.|++... |..+|-+|. ..|.+...+++..+.++...
T Consensus 150 PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 150 PVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 49999998665433 3333332221 1244578888877543 567777665 56889999999988888877
Q ss_pred HHhcC-C-------------------CCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036742 532 ARKED-F-------------------DLSMTFAAKIATKAKQNLRKAIMALEACKA 567 (629)
Q Consensus 532 ~~keg-l-------------------~is~e~L~~Ia~~s~GDiR~AInlLq~~~~ 567 (629)
+.... . ......++..+...+|-+...-.+.+.++.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 75431 1 124556777888888877777666666654
No 285
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.71 E-value=0.00061 Score=83.29 Aligned_cols=146 Identities=18% Similarity=0.306 Sum_probs=99.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCC-
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEV- 459 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~- 459 (629)
.+||.||..+|||+++..+|++. |.. ++.||-..... +.+.+..|.....+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t-ghk-------------------fVRINNHEHTd--------lqeYiGTyvTdd~G~ 941 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET-GHK-------------------FVRINNHEHTD--------LQEYIGTYVTDDDGS 941 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh-Ccc-------------------EEEecCcccch--------HHHHhhceeecCCCc
Confidence 48999999999999999999996 543 34444422211 11112222211111
Q ss_pred -------------CCeEEEEEccchhhHHHHHHHHHHHhccC--------------CCcEEEEEecCCcc-------chH
Q 036742 460 -------------SNAMIVIYEVDKAAEHIQYLIKWIMDGYT--------------DSCKLILCCEDDVD-------IIE 505 (629)
Q Consensus 460 -------------~~kVIIIDEID~Ls~~~q~aLlrilEe~~--------------~~~~~ILitN~~~~-------I~~ 505 (629)
.+--|++||..-...++.++|.++++... .+.+ +++|..|.. +..
T Consensus 942 lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~-lFATQNppg~YgGRK~LSr 1020 (4600)
T COG5271 942 LSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFR-LFATQNPPGGYGGRKGLSR 1020 (4600)
T ss_pred eeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCee-EEeecCCCccccchHHHHH
Confidence 12379999999999999999999997422 2222 344444332 678
Q ss_pred HHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHH
Q 036742 506 SVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NLRKAIM 560 (629)
Q Consensus 506 aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-DiR~AIn 560 (629)
++|.|+..++|...+.+++..||.. ++.+.+.....|++...| .+|+.++
T Consensus 1021 AFRNRFlE~hFddipedEle~ILh~-----rc~iapSyakKiVeVyr~Ls~rRs~~ 1071 (4600)
T COG5271 1021 AFRNRFLEMHFDDIPEDELEEILHG-----RCEIAPSYAKKIVEVYRGLSSRRSIN 1071 (4600)
T ss_pred HHHhhhHhhhcccCcHHHHHHHHhc-----cCccCHHHHHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999874 456778888888876544 4555544
No 286
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.71 E-value=0.00024 Score=66.07 Aligned_cols=24 Identities=46% Similarity=0.631 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+++|+||||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999863
No 287
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.0005 Score=68.72 Aligned_cols=28 Identities=36% Similarity=0.613 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
+|-|||+|+||+||||+|+.+|++|...
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 3568999999999999999999998533
No 288
>PHA02624 large T antigen; Provisional
Probab=97.69 E-value=0.00014 Score=82.72 Aligned_cols=102 Identities=23% Similarity=0.247 Sum_probs=61.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~ 460 (629)
.++|+||||||||+++.+|++.|.|. ++.+|......- |-+.....
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~--------------------vlsVNsPt~ks~--------------FwL~pl~D 478 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGK--------------------SLNVNCPPDKLN--------------FELGCAID 478 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe--------------------EEEeeCCcchhH--------------HHhhhhhh
Confidence 68899999999999999999997554 444553222110 11111122
Q ss_pred CeEEEEEccchhhH-----------HHHHHHHHHHhcc-C------------CCc-EEEEEecCCccchHHHhhcce-Ee
Q 036742 461 NAMIVIYEVDKAAE-----------HIQYLIKWIMDGY-T------------DSC-KLILCCEDDVDIIESVKTHCK-VI 514 (629)
Q Consensus 461 ~kVIIIDEID~Ls~-----------~~q~aLlrilEe~-~------------~~~-~~ILitN~~~~I~~aLrSR~~-~I 514 (629)
.++++|||+-.--. +-...|+..++.. + -.+ ++|+|+| .+.|+.+++-||. ++
T Consensus 479 ~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~Rf~~~~ 557 (647)
T PHA02624 479 QFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKARFAKVL 557 (647)
T ss_pred ceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHHHHHHhc
Confidence 35899999853211 1124566666644 1 112 3566666 5678889999984 56
Q ss_pred ecc
Q 036742 515 KVD 517 (629)
Q Consensus 515 ~F~ 517 (629)
.|.
T Consensus 558 ~F~ 560 (647)
T PHA02624 558 DFK 560 (647)
T ss_pred ccc
Confidence 664
No 289
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.66 E-value=0.0041 Score=65.64 Aligned_cols=42 Identities=31% Similarity=0.388 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcC--CCC-eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 365 HEAQLLKELVVDG--NCP-HILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 365 ~~~~~Lk~~L~~g--~~p-~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
...+.|.+.|... ..+ .|.|+|+=|+|||++.+.+-+++...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3456777888754 233 56799999999999999999988544
No 290
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.65 E-value=5.6e-05 Score=81.18 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=38.4
Q ss_pred CeEEEEEccchhhHHHHHHHHHHHhccC-------------CCcEEEEEecCCc-------------cchHHHhhcceE-
Q 036742 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DSCKLILCCEDDV-------------DIIESVKTHCKV- 513 (629)
Q Consensus 461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~~~~ILitN~~~-------------~I~~aLrSR~~~- 513 (629)
+.|++|||+|.|..+...+|...||.-. ..+.|+.+||... .+.++|.+||-.
T Consensus 122 ~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 122 GGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp TSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred CceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 4599999999999999999999999632 4456788888654 256789999943
Q ss_pred ee-ccCCCHHH
Q 036742 514 IK-VDPPVTHE 523 (629)
Q Consensus 514 I~-F~ppt~ee 523 (629)
+. +..++.+.
T Consensus 202 f~l~D~~d~~~ 212 (331)
T PF00493_consen 202 FLLRDKPDEEE 212 (331)
T ss_dssp ECC--TTT-HH
T ss_pred EEecccccccc
Confidence 33 45565443
No 291
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.011 Score=63.48 Aligned_cols=160 Identities=15% Similarity=0.132 Sum_probs=112.1
Q ss_pred eEEEEEccchhh-HHHHHHHHHHHhccC-CCcEEEEEecCCcc---chHHHhhc--ceEeeccCCCHHHHHHHHHHHHHh
Q 036742 462 AMIVIYEVDKAA-EHIQYLIKWIMDGYT-DSCKLILCCEDDVD---IIESVKTH--CKVIKVDPPVTHEIMEVLIQIARK 534 (629)
Q Consensus 462 kVIIIDEID~Ls-~~~q~aLlrilEe~~-~~~~~ILitN~~~~---I~~aLrSR--~~~I~F~ppt~eei~~iL~~i~~k 534 (629)
++++|...+... .+....+.......+ ....+++.++..+. +...+..- +.++.+.+++..++.+++...+.+
T Consensus 76 ~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 155 (334)
T COG1466 76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKE 155 (334)
T ss_pred eeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHH
Confidence 589999888874 344444444444444 34444444544433 22223222 668999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH--------HHHHHHHhcCCChHHHHHHH
Q 036742 535 EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVL--------IELAAEILADPSPKRLVMVR 606 (629)
Q Consensus 535 egl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l--------~ei~~~il~~~s~~~L~~ir 606 (629)
.|+.+++++++.++...+||++.+.+-++.+.+.... +..+..+++.++ .++++.++.++....+
T Consensus 156 ~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~---~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~---- 228 (334)
T COG1466 156 LGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGD---KEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKAL---- 228 (334)
T ss_pred cCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCC---CcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHH----
Confidence 9999999999999999999999999999987765432 122234444444 5667777777655544
Q ss_pred HHHHHHHHcCCCHHHHHHHHhc
Q 036742 607 GKIQKLLAEFVHPKLILLVMHY 628 (629)
Q Consensus 607 ~kly~lL~~~i~~~~i~~~La~ 628 (629)
..+++++..+++|-.|+.-|++
T Consensus 229 ~~l~~L~~~ge~p~~il~~l~~ 250 (334)
T COG1466 229 RLLRDLLLEGEEPLKLLAALTR 250 (334)
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 5577888899998888877653
No 292
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.63 E-value=0.0011 Score=71.68 Aligned_cols=218 Identities=14% Similarity=0.133 Sum_probs=112.6
Q ss_pred CcccccHHHHHHHHHHHHcCC--CC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC---cceEEEe
Q 036742 358 NGFICHRHEAQLLKELVVDGN--CP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS---AHHVELN 431 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~--~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS---~~vleIn 431 (629)
..+.+.+..+..|+.++-... .| +++|+|-.|||||.+++.+.+.++-+..|- .|++|-...- .-...+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~----n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWL----NCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceee----ehHHhccHHHHHHHHHHHhc
Confidence 567788999999999996443 45 568999999999999999999874443321 1111110000 0000000
Q ss_pred -cccchhhH-HHHHHHHHHHHHHhcc----CcCCCCeEEEEEccchhhH---HHHHHHHHHHhccC-CCcEEEEEecCCc
Q 036742 432 -VNLQANAK-YALMGLVKEIRDNLAI----TPEVSNAMIVIYEVDKAAE---HIQYLIKWIMDGYT-DSCKLILCCEDDV 501 (629)
Q Consensus 432 -as~~~~~k-~~l~~~lrei~~~~~~----~~~~~~kVIIIDEID~Ls~---~~q~aLlrilEe~~-~~~~~ILitN~~~ 501 (629)
++ ..+.. ....+.+..++..+.. .....+-+||+|.+|.+.. .....|.++-+... ..+.||++.....
T Consensus 82 ~~d-~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 82 LAD-KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred cCC-CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 11 11110 0001222222222222 1112345999999999953 33444444444222 3455666544332
Q ss_pred cchH--HHhhcceEeeccCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHH----HHccCCHHHHHHHHHHHHh-cCCCCC
Q 036742 502 DIIE--SVKTHCKVIKVDPPVTHEIMEVLIQIAR-KEDFDLSMTFAAKIA----TKAKQNLRKAIMALEACKA-LNYPFA 573 (629)
Q Consensus 502 ~I~~--aLrSR~~~I~F~ppt~eei~~iL~~i~~-kegl~is~e~L~~Ia----~~s~GDiR~AInlLq~~~~-~~~~~~ 573 (629)
..-. .=-.-..++.|+.|+.+++..|+.+--. +....+-...+..+. ..| +|++....++..+.. .-++..
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~c-rd~~eL~~~~~~~wpky~epi~ 239 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMAC-RDVNELRSLISLAWPKYCEPIT 239 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhccccc
Confidence 2110 0011235799999999999988865322 211111122333332 334 488888777776543 233455
Q ss_pred CCCCCchh
Q 036742 574 DDQPIPLG 581 (629)
Q Consensus 574 ~~~~~~~~ 581 (629)
.+...+.+
T Consensus 240 ~~~i~~~d 247 (438)
T KOG2543|consen 240 KGKIDPTD 247 (438)
T ss_pred cCCCChhH
Confidence 55555544
No 293
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.60 E-value=0.00026 Score=65.70 Aligned_cols=50 Identities=14% Similarity=0.336 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHHH----cCC--CCe-EEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742 358 NGFICHRHEAQLLKELVV----DGN--CPH-ILIKGQSGSGKRALAMALLHEIYGDA 407 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~----~g~--~p~-ILL~GPPGtGKTtLAraLAkeL~g~~ 407 (629)
..|.||.-+++.+..+|+ ... .|- +-|+||+|||||.+++.||+.|+..+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 668888876666655554 322 233 34999999999999999999987554
No 294
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.59 E-value=0.00058 Score=75.22 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=65.2
Q ss_pred ccCCCCCCcccccHHHHHHHH---HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH-HhCCCCCCCCCCccccccccCCcc
Q 036742 351 KHQPSSLNGFICHRHEAQLLK---ELVVDGNCPHILIKGQSGSGKRALAMALLHE-IYGDACWNEKWPTQVLVPVASSAH 426 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk---~~L~~g~~p~ILL~GPPGtGKTtLAraLAke-L~g~~~~~~~~~~~v~~~i~sS~~ 426 (629)
=|.|..|++ ...+..|. .|+..+ -|+++.||+|||||++|.+++.. ..-.+.
T Consensus 184 G~~P~~~~~----r~k~~~L~rl~~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~sG~------------------ 239 (449)
T TIGR02688 184 GYEPEGFEA----RQKLLLLARLLPLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILISGG------------------ 239 (449)
T ss_pred CCCcccCCh----HHHHHHHHhhHHHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHcCC------------------
Confidence 466766653 33333343 455544 38999999999999999998877 211110
Q ss_pred eEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh----hHHHHHHHHHHHhccC---------CCcEE
Q 036742 427 HVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA----AEHIQYLIKWIMDGYT---------DSCKL 493 (629)
Q Consensus 427 vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L----s~~~q~aLlrilEe~~---------~~~~~ 493 (629)
. + ....++.++-....+.+ ....+|+|||+..+ ..+....|...|+... ..+.+
T Consensus 240 f--~------T~a~Lf~~L~~~~lg~v-----~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~ 306 (449)
T TIGR02688 240 T--I------TVAKLFYNISTRQIGLV-----GRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASF 306 (449)
T ss_pred c--C------cHHHHHHHHHHHHHhhh-----ccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEE
Confidence 0 0 01112222222222211 22359999999996 3446677887777432 44567
Q ss_pred EEEecCC
Q 036742 494 ILCCEDD 500 (629)
Q Consensus 494 ILitN~~ 500 (629)
|+..|-.
T Consensus 307 vfvGNi~ 313 (449)
T TIGR02688 307 VFLGNVP 313 (449)
T ss_pred EEEcccC
Confidence 8877653
No 295
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.56 E-value=0.001 Score=75.45 Aligned_cols=147 Identities=13% Similarity=0.086 Sum_probs=80.9
Q ss_pred CCcccccHHHHHHHHHHHHcCC------------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc-C
Q 036742 357 LNGFICHRHEAQLLKELVVDGN------------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA-S 423 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~~g~------------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~-s 423 (629)
|-.|.||+.++.-|.=.|-.|- -.||+|.|.||+||+-+.++++.-+ .-..|. +-... .
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs-PR~vYt-------sGkaSSa 415 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS-PRSVYT-------SGKASSA 415 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC-CcceEe-------cCccccc
Confidence 4568899998876665554221 1289999999999999999988653 111100 00000 0
Q ss_pred CcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------CC
Q 036742 424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DS 490 (629)
Q Consensus 424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~ 490 (629)
.+..+-+--+...++ +.-.+...--..+.|..|||+|.|....|.+|...||.-. ..
T Consensus 416 AGLTaaVvkD~esgd----------f~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnAR 485 (764)
T KOG0480|consen 416 AGLTAAVVKDEESGD----------FTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNAR 485 (764)
T ss_pred ccceEEEEecCCCCc----------eeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecch
Confidence 011111111111111 0000000111234599999999999988999999998643 12
Q ss_pred cEEEEEecCCc-------------cchHHHhhcce--EeeccCCCH
Q 036742 491 CKLILCCEDDV-------------DIIESVKTHCK--VIKVDPPVT 521 (629)
Q Consensus 491 ~~~ILitN~~~-------------~I~~aLrSR~~--~I~F~ppt~ 521 (629)
+.||.++|... .+..+|.|||- .|-+..++.
T Consensus 486 tSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE 531 (764)
T KOG0480|consen 486 TSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNE 531 (764)
T ss_pred hhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCch
Confidence 23455555421 14678899983 233444443
No 296
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.53 E-value=0.00065 Score=75.26 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=99.4
Q ss_pred CcccccHHHHHHHHHHHHcCCC---------C---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 358 NGFICHRHEAQLLKELVVDGNC---------P---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~~---------p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
-+|.|++++++.|.-+|..|.- + +|+|.|.||+.|+-|.+.|.+.. .-..+-.- -.+|+
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rla-pRgvYTTG--------rGSSG 412 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLA-PRGVYTTG--------RGSSG 412 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcC-cccceecC--------CCCCc
Confidence 5799999999999888864421 1 69999999999999999998853 11110000 00000
Q ss_pred ceEEEecccchhhHHHHHHHHHHHH-HHhccCc----CCCCeEEEEEccchhhHHHHHHHHHHHhccC------------
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIR-DNLAITP----EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------ 488 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~-~~~~~~~----~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------ 488 (629)
+-+.+. ++++-+ ....+.+ -..+.|..|||+|.|.+...-++..+||.-+
T Consensus 413 --VGLTAA-----------VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtL 479 (721)
T KOG0482|consen 413 --VGLTAA-----------VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTL 479 (721)
T ss_pred --cccchh-----------hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccch
Confidence 111110 011100 0000000 0123499999999998888888888887533
Q ss_pred -CCcEEEEEecCCc-------------cchHHHhhcce-------------------------------EeeccCCCHHH
Q 036742 489 -DSCKLILCCEDDV-------------DIIESVKTHCK-------------------------------VIKVDPPVTHE 523 (629)
Q Consensus 489 -~~~~~ILitN~~~-------------~I~~aLrSR~~-------------------------------~I~F~ppt~ee 523 (629)
..+-|+.++|..+ .+..+|.|||- ...|.|++.+-
T Consensus 480 NAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~ 559 (721)
T KOG0482|consen 480 NARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNL 559 (721)
T ss_pred hhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHH
Confidence 2233455555421 15788888872 13466666766
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 036742 524 IMEVLIQIARKEDFDLSMTFAAKIATK 550 (629)
Q Consensus 524 i~~iL~~i~~kegl~is~e~L~~Ia~~ 550 (629)
++.++. .|+...-.++++..++|+..
T Consensus 560 mR~yI~-~ak~~~P~vp~~l~dyi~~A 585 (721)
T KOG0482|consen 560 MRRYIS-LAKRKNPVVPEALADYITGA 585 (721)
T ss_pred HHHHHH-HHhhcCCCCCHHHHHHHHHH
Confidence 666664 34444455677777766543
No 297
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.50 E-value=0.0018 Score=68.94 Aligned_cols=155 Identities=23% Similarity=0.290 Sum_probs=85.1
Q ss_pred ccccHHHHHHHHHHH----HcCCCCeEEEEcCCCCcHHHHHHHHHHHH--hCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 360 FICHRHEAQLLKELV----VDGNCPHILIKGQSGSGKRALAMALLHEI--YGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 360 IiG~e~~~~~Lk~~L----~~g~~p~ILL~GPPGtGKTtLAraLAkeL--~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
+.|..+....|.+|+ ..|....+++.||.|+|||.+.-...... +++.+ .++.+|..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~-----------------l~v~Lng~ 88 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF-----------------LLVRLNGE 88 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE-----------------EEEEECcc
Confidence 456655555555555 46778889999999999999776555431 23322 25566664
Q ss_pred cchhhHHHHHHHHHHHHHHh-------cc--------------CcC-CCCe-EEEEEccchhhH-HHHHHHHHHHhccC-
Q 036742 434 LQANAKYALMGLVKEIRDNL-------AI--------------TPE-VSNA-MIVIYEVDKAAE-HIQYLIKWIMDGYT- 488 (629)
Q Consensus 434 ~~~~~k~~l~~~lrei~~~~-------~~--------------~~~-~~~k-VIIIDEID~Ls~-~~q~aLlrilEe~~- 488 (629)
... ++.++.++.+.+.... .. ... .+.+ |+|+||+|...+ .-|-.|+.++|...
T Consensus 89 ~~~-dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs 167 (408)
T KOG2228|consen 89 LQT-DKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS 167 (408)
T ss_pred chh-hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh
Confidence 333 2323333333222110 00 001 1222 666679998843 44556666666332
Q ss_pred CCcE--EEEEecCC---ccchHHHhhcce---EeeccCCCHHHHHHHHHHHH
Q 036742 489 DSCK--LILCCEDD---VDIIESVKTHCK---VIKVDPPVTHEIMEVLIQIA 532 (629)
Q Consensus 489 ~~~~--~ILitN~~---~~I~~aLrSR~~---~I~F~ppt~eei~~iL~~i~ 532 (629)
...+ +|..|... +.+-...+||+- ++-++..+-.++..+++...
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2333 33333333 235677888883 34445666778877777654
No 298
>PRK13695 putative NTPase; Provisional
Probab=97.49 E-value=0.0012 Score=63.84 Aligned_cols=67 Identities=13% Similarity=0.250 Sum_probs=42.6
Q ss_pred CCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEEEecCCc--cchHHHhhcc--eEeeccCCCHHHHHHHHH
Q 036742 460 SNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLILCCEDDV--DIIESVKTHC--KVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 460 ~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~ILitN~~~--~I~~aLrSR~--~~I~F~ppt~eei~~iL~ 529 (629)
...+|+|||+..+ .....+.+..+++ ....+|++++... .+.+.|..+. .++.+.+-+.+++-..+.
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~ 169 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEIL 169 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHH
Confidence 3459999997554 4445566666664 4568888888743 2456666664 567776666665554443
No 299
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.48 E-value=0.00027 Score=73.68 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=68.1
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHH
Q 036742 368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVK 447 (629)
Q Consensus 368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lr 447 (629)
+.|......... .|||.||.|.||+.||+.|...-... ..-++.++|+||...+|+. ....++.
T Consensus 198 eqierva~rsr~-p~ll~gptgagksflarriyelk~ar--------------hq~sg~fvevncatlrgd~-amsalfg 261 (531)
T COG4650 198 EQIERVAIRSRA-PILLNGPTGAGKSFLARRIYELKQAR--------------HQFSGAFVEVNCATLRGDT-AMSALFG 261 (531)
T ss_pred HHHHHHHhhccC-CeEeecCCCcchhHHHHHHHHHHHHH--------------HhcCCceEEEeeeeecCch-HHHHHHh
Confidence 344443333333 49999999999999999987542111 1124558999997766653 2333444
Q ss_pred HHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhc
Q 036742 448 EIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDG 486 (629)
Q Consensus 448 ei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe 486 (629)
.+...|.... ...+.++|+|||..|..+.|..|++.+|+
T Consensus 262 hvkgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaiee 308 (531)
T COG4650 262 HVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEE 308 (531)
T ss_pred hhccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHh
Confidence 4433333222 23456999999999999999999999985
No 300
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.46 E-value=0.0071 Score=74.63 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=88.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHH-----HHh
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIR-----DNL 453 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~-----~~~ 453 (629)
...+||.|.||+|||+++.++|+.. |.. .+.||-++... +.+++..-. ..|
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~t-G~k-------------------liRINLSeQTd----L~DLfGsd~Pve~~Gef 1598 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKT-GKK-------------------LIRINLSEQTD----LCDLFGSDLPVEEGGEF 1598 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHh-cCc-------------------eEEeeccccch----HHHHhCCCCCcccCcee
Confidence 3479999999999999999999996 554 35555543221 111111000 000
Q ss_pred ccC------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc--------------CCCcEEEEEecCCc------cchHHH
Q 036742 454 AIT------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY--------------TDSCKLILCCEDDV------DIIESV 507 (629)
Q Consensus 454 ~~~------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~--------------~~~~~~ILitN~~~------~I~~aL 507 (629)
... .-..+.-|++||+.-.+..+.+-|...++.- ..+.+++.+-|..+ .++..+
T Consensus 1599 ~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1599 RWMDAPFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred EecccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHH
Confidence 000 0012348999999998888877777776521 13334444444322 278999
Q ss_pred hhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 036742 508 KTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIAT 549 (629)
Q Consensus 508 rSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~ 549 (629)
..|+.++.+..++.+++..|+.... ..+.++....|+.
T Consensus 1679 ~nRFsvV~~d~lt~dDi~~Ia~~~y----p~v~~d~~~kiik 1716 (4600)
T COG5271 1679 LNRFSVVKMDGLTTDDITHIANKMY----PQVNEDWRLKIIK 1716 (4600)
T ss_pred hhhhheEEecccccchHHHHHHhhC----CccChHHHHHHHH
Confidence 9999999999999999887775432 3455665555543
No 301
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.42 E-value=0.00018 Score=81.78 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=42.7
Q ss_pred CCCCCCcccccHHHHHHHHHHHH------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 353 QPSSLNGFICHRHEAQLLKELVV------DGNCPHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
+-.-|+|+.|++++++.|.+.++ ...-+.++|.||||+|||+||++||+.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 33468899999999988888873 222346889999999999999999998743
No 302
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.40 E-value=0.0033 Score=65.75 Aligned_cols=153 Identities=12% Similarity=0.206 Sum_probs=83.2
Q ss_pred cccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742 359 GFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA 436 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~ 436 (629)
+++.-+++++.+..+.+ .....|+||.|..|+||+++++..|.- .+.. ++++......
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i-~~~~-------------------~~~i~~~~~y 68 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFI-CGYE-------------------VFQIEITKGY 68 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHH-TTEE-------------------EE-TTTSTTT
T ss_pred ceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHH-hccc-------------------eEEEEeeCCc
Confidence 45556777766665554 233458999999999999999966654 3433 3444443333
Q ss_pred hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHH-------------------------HHHHH----------
Q 036742 437 NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHI-------------------------QYLIK---------- 481 (629)
Q Consensus 437 ~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~-------------------------q~aLl---------- 481 (629)
+.+ ...+.++.+....+.. +...|++|+|.+-..+.. .+.++
T Consensus 69 ~~~-~f~~dLk~~~~~ag~~--~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~ 145 (268)
T PF12780_consen 69 SIK-DFKEDLKKALQKAGIK--GKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISD 145 (268)
T ss_dssp HHH-HHHHHHHHHHHHHHCS---S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--S
T ss_pred CHH-HHHHHHHHHHHHHhcc--CCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCC
Confidence 322 2233444444433332 334577777754331111 11111
Q ss_pred -------HHHhccCCCcEEEEEecCCcc-------chHHHhhcceEeeccCCCHHHHHHHHHHHHHh
Q 036742 482 -------WIMDGYTDSCKLILCCEDDVD-------IIESVKTHCKVIKVDPPVTHEIMEVLIQIARK 534 (629)
Q Consensus 482 -------rilEe~~~~~~~ILitN~~~~-------I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k 534 (629)
-+++.-..+..||++-..... ..|+|.++|.+.-|.+.+.+.+..+-......
T Consensus 146 ~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 146 SRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp SHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred chHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 111222355677877654332 25788889999999999998888877766543
No 303
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.39 E-value=0.0009 Score=66.92 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=66.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~ 460 (629)
.++|.|+.|+|||+..+.|+.+.+.... .... . + +.+..+...
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~~~~d~~----------------------~~~~--~-k----d~~~~l~~~-------- 96 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPEYFSDSI----------------------NDFD--D-K----DFLEQLQGK-------- 96 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHHhccCcc----------------------ccCC--C-c----HHHHHHHHh--------
Confidence 4779999999999999999777433321 0000 0 1 111122211
Q ss_pred CeEEEEEccchhhHHHHHHHHHHHhcc---------------CCCcEEEEEecCCccc-hHHHhhcceEeeccC
Q 036742 461 NAMIVIYEVDKAAEHIQYLIKWIMDGY---------------TDSCKLILCCEDDVDI-IESVKTHCKVIKVDP 518 (629)
Q Consensus 461 ~kVIIIDEID~Ls~~~q~aLlrilEe~---------------~~~~~~ILitN~~~~I-~~aLrSR~~~I~F~p 518 (629)
-||.|||++.+.....+.|..++... +..+.||.+||..+-| +++=-+|+.++.+..
T Consensus 97 -~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 97 -WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred -HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 27999999999888888888776432 2344578889987754 566778998888875
No 304
>PRK04296 thymidine kinase; Provisional
Probab=97.37 E-value=0.00058 Score=67.49 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
-.|++||+|+||||++..++..+.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999987643
No 305
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.35 E-value=0.001 Score=66.84 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=21.8
Q ss_pred CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+.+|||||+.++++... ..++.....++.+|++.+.
T Consensus 119 ~~~~iIvDEaQN~t~~~~---k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPEEL---KMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp -SEEEEE-SGGG--HHHH---HHHHTTB-TT-EEEEEE--
T ss_pred cceEEEEecccCCCHHHH---HHHHcccCCCcEEEEecCc
Confidence 356999999999987554 3445555678999998764
No 306
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.33 E-value=0.0011 Score=69.26 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=29.0
Q ss_pred HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
|..++..+.+.+++|.||+|+||||++++++..+.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 44445566677999999999999999999998863
No 307
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.31 E-value=0.017 Score=63.93 Aligned_cols=91 Identities=13% Similarity=0.223 Sum_probs=62.2
Q ss_pred EEEEEccchhh--------HHHHHHHHHHHhccC----CCcEEEEEecCC------ccc--hHHHhhcc-----------
Q 036742 463 MIVIYEVDKAA--------EHIQYLIKWIMDGYT----DSCKLILCCEDD------VDI--IESVKTHC----------- 511 (629)
Q Consensus 463 VIIIDEID~Ls--------~~~q~aLlrilEe~~----~~~~~ILitN~~------~~I--~~aLrSR~----------- 511 (629)
||+|||++.+. ....+.|+.+++... .+..|++++... .-+ .++|.+|+
T Consensus 242 lI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~~ 321 (416)
T PF10923_consen 242 LILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGFD 321 (416)
T ss_pred EEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccccccccc
Confidence 99999999882 245678888887543 344566665431 113 57888875
Q ss_pred ----eEeeccCCCHHHHHHHHHHHHH------hcCCCCCHHHHHHHHHHccC
Q 036742 512 ----KVIKVDPPVTHEIMEVLIQIAR------KEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 512 ----~~I~F~ppt~eei~~iL~~i~~------kegl~is~e~L~~Ia~~s~G 553 (629)
.+|.+.+++.+++..++.++.. .....++++.+..+++.+.|
T Consensus 322 n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~ 373 (416)
T PF10923_consen 322 NLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAG 373 (416)
T ss_pred CccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Confidence 2588999999999988877642 12246788888888766543
No 308
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.30 E-value=0.032 Score=65.73 Aligned_cols=174 Identities=11% Similarity=0.213 Sum_probs=106.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
+|.-....+-.+. |...|..+ ..+-++|+-|.|.||||++-.++..+ .... .+.-++
T Consensus 14 ~P~~~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~-~~~~-----------------~v~Wls 71 (894)
T COG2909 14 RPVRPDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA-ADGA-----------------AVAWLS 71 (894)
T ss_pred CCCCcccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc-Cccc-----------------ceeEee
Confidence 4555565555555 44444443 56789999999999999999888632 2211 133333
Q ss_pred cccch-----hhHHHH--------------------------HHHHHHHHHHhccCcCCCCeEEEEEccchhhH-HHHHH
Q 036742 432 VNLQA-----NAKYAL--------------------------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-HIQYL 479 (629)
Q Consensus 432 as~~~-----~~k~~l--------------------------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-~~q~a 479 (629)
.+... ...+++ ..++..+.... ....++..+||||.+.+.. .....
T Consensus 72 lde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~El--a~~~~pl~LVlDDyHli~~~~l~~~ 149 (894)
T COG2909 72 LDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNEL--ASYEGPLYLVLDDYHLISDPALHEA 149 (894)
T ss_pred cCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHH--HhhcCceEEEeccccccCcccHHHH
Confidence 32111 111110 11111111111 1112335999999999954 56778
Q ss_pred HHHHHhccCCCcEEEEEecCCccc-hHHHhhcceEeecc----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 480 IKWIMDGYTDSCKLILCCEDDVDI-IESVKTHCKVIKVD----PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 480 LlrilEe~~~~~~~ILitN~~~~I-~~aLrSR~~~I~F~----ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
|..+++..+.+..+|+++.....+ ...++-|-..+++. .++.+|..+.+.. ..+..++...++.|...+.|
T Consensus 150 l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~---~~~l~Ld~~~~~~L~~~teG 225 (894)
T COG2909 150 LRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND---RGSLPLDAADLKALYDRTEG 225 (894)
T ss_pred HHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHH---cCCCCCChHHHHHHHhhccc
Confidence 888888888999999998765553 44444444333332 3567787777763 34578899999999999888
No 309
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.27 E-value=0.0011 Score=71.59 Aligned_cols=23 Identities=48% Similarity=0.772 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+++.|.||||||.||..+++.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999998
No 310
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0022 Score=76.26 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=106.6
Q ss_pred CCccccc-HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc--eEEEec-
Q 036742 357 LNGFICH-RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH--HVELNV- 432 (629)
Q Consensus 357 fddIiG~-e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~--vleIna- 432 (629)
++-++|. ++.++.+.+.|......+-+|.|.||+|||.++.-+|..+...++... ..... ++.+-.
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~----------l~~~~l~~l~~g~l 254 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPET----------LKDKKLIALDFGSL 254 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCcc----------ccccceEEEEhhhc
Confidence 5677786 776777777776666678999999999999999999998754443220 01111 122211
Q ss_pred ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEEEEEec-CCcc-
Q 036742 433 NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKLILCCE-DDVD- 502 (629)
Q Consensus 433 s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~ILitN-~~~~- 502 (629)
..+......++..++++.+.... .+.+-||||||++-+.. ++.+.|...+.. ....+|-+|. +.+.
T Consensus 255 ~aGa~~rge~E~rlk~l~k~v~~--~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r--g~l~~IGatT~e~Y~k 330 (898)
T KOG1051|consen 255 VAGAKRRGEFEERLKELLKEVES--GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR--GGLWCIGATTLETYRK 330 (898)
T ss_pred ccCcccchHHHHHHHHHHHHHhc--CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc--CCeEEEecccHHHHHH
Confidence 11111122345566666554333 33456999999999832 233333333322 2255565443 2221
Q ss_pred ---chHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHH
Q 036742 503 ---IIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATK 550 (629)
Q Consensus 503 ---I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~ 550 (629)
-+++|.+|+..+.++-|+.++...+|.....+ .|..+.++.+...+..
T Consensus 331 ~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~ 385 (898)
T KOG1051|consen 331 CIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQL 385 (898)
T ss_pred HHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccch
Confidence 37899999999999999987766666655443 3445555544444433
No 311
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.23 E-value=0.0023 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
++++++||+|+|||+++..++.++..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh
Confidence 36899999999999999999988753
No 312
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.22 E-value=0.0029 Score=74.80 Aligned_cols=114 Identities=14% Similarity=0.182 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL 442 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l 442 (629)
.++..+.+..++.. +.++|.|+|||||||+++++...+..... ...+.+.+...+..+ .+
T Consensus 325 ~~~Q~~Ai~~~~~~---~~~iitGgpGTGKTt~l~~i~~~~~~~~~----------------~~~v~l~ApTg~AA~-~L 384 (720)
T TIGR01448 325 SEEQKQALDTAIQH---KVVILTGGPGTGKTTITRAIIELAEELGG----------------LLPVGLAAPTGRAAK-RL 384 (720)
T ss_pred CHHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHHHHHcCC----------------CceEEEEeCchHHHH-HH
Confidence 45555556555433 36899999999999999999887643210 002333332221111 11
Q ss_pred HH-------HHHHHHHHhcc-------CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 443 MG-------LVKEIRDNLAI-------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 443 ~~-------~lrei~~~~~~-------~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+ .+..+...... .......+|||||+..+.......|++.+ ...+++||+...
T Consensus 385 ~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~ 452 (720)
T TIGR01448 385 GEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDT 452 (720)
T ss_pred HHhcCCccccHHHHhhccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECcc
Confidence 11 01111110000 00123459999999999887776666644 467889988754
No 313
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.17 E-value=0.0068 Score=57.36 Aligned_cols=40 Identities=8% Similarity=0.186 Sum_probs=25.1
Q ss_pred eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+|||||+|.+.. .....+..++........+++.+..+.
T Consensus 131 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~ 171 (201)
T smart00487 131 DLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPP 171 (201)
T ss_pred CEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCc
Confidence 3899999999986 444455555554444555555554443
No 314
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.17 E-value=0.0096 Score=71.87 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=109.0
Q ss_pred cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh-CCCCCCCCCCccccccccCCcceEEEecccchhhH
Q 036742 361 ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAK 439 (629)
Q Consensus 361 iG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~-g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k 439 (629)
+|++..++.+.+.|.......+=|||-.|+||||||+.+-+... -...+. .++-+..+......
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd---------------~~iWV~VSk~f~~~ 225 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD---------------GVIWVVVSKEFTTR 225 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCc---------------eEEEEEEcccccHH
Confidence 99999999999999876666677999999999999998887642 111100 02222223222222
Q ss_pred HHHHHHHHHHHH---------------HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742 440 YALMGLVKEIRD---------------NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504 (629)
Q Consensus 440 ~~l~~~lrei~~---------------~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~ 504 (629)
.+..+++..+.. .....-...+.+|++|||=.=. ....+...+-.-..++.+++||....--.
T Consensus 226 ~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 226 KIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred hHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 122222221100 0000011233499999873321 11111111111124488999986432211
Q ss_pred HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchh
Q 036742 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDL---SMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLG 581 (629)
Q Consensus 505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~i---s~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~ 581 (629)
.+ ..+...++..-++.++.=..+.+++......- -++....++..|.| +--|++.|-.+-+. ..+...
T Consensus 304 ~~-m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~G-LPLAl~viG~~ma~-------K~t~~e 374 (889)
T KOG4658|consen 304 RA-MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGG-LPLALNVLGGLLAC-------KKTVQE 374 (889)
T ss_pred cc-ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCC-hHHHHHHHHHHhcC-------CCcHHH
Confidence 11 11244566777777777777776653321211 25667778888887 66677777543322 222345
Q ss_pred HHHHHHHHHH
Q 036742 582 WEEVLIELAA 591 (629)
Q Consensus 582 ~ek~l~ei~~ 591 (629)
|+.++..+..
T Consensus 375 W~~~~~~l~s 384 (889)
T KOG4658|consen 375 WRRALNVLKS 384 (889)
T ss_pred HHHHHccccc
Confidence 6666654443
No 315
>PTZ00202 tuzin; Provisional
Probab=97.15 E-value=0.038 Score=61.47 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=43.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHcCC--C-CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVDGN--C-PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~g~--~-p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|....+++|.+.....|...|.... . +.++|.||+|||||++++.++..+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 56678999999999999999997432 2 356799999999999999999775
No 316
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.13 E-value=0.0062 Score=65.41 Aligned_cols=117 Identities=15% Similarity=0.276 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc
Q 036742 378 NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457 (629)
Q Consensus 378 ~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~ 457 (629)
...+++|||+-|+|||.|.-.+...+-+... . -+.... ...++.+++........
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k--~---------------R~HFh~--------FM~~vH~~l~~l~g~~d 118 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLPGERK--R---------------RLHFHR--------FMARVHQRLHTLQGQTD 118 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCCcccc--c---------------cccHHH--------HHHHHHHHHHHHcCCCC
Confidence 3458999999999999999998887643321 0 000000 00111111111100000
Q ss_pred ---------CCCCeEEEEEccchhhHHHHHHHHHHHhc-cCCCcEEEEEecCCcc-----------c---hHHHhhcceE
Q 036742 458 ---------EVSNAMIVIYEVDKAAEHIQYLIKWIMDG-YTDSCKLILCCEDDVD-----------I---IESVKTHCKV 513 (629)
Q Consensus 458 ---------~~~~kVIIIDEID~Ls~~~q~aLlrilEe-~~~~~~~ILitN~~~~-----------I---~~aLrSR~~~ 513 (629)
.....||+|||+.--.....-.|.++++. +..++.+|.|+|.... + +..|.++|.+
T Consensus 119 pl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v 198 (367)
T COG1485 119 PLPPIADELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEV 198 (367)
T ss_pred ccHHHHHHHHhcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEE
Confidence 01234999999876655555556666653 4567788888887432 2 3456788887
Q ss_pred eeccCC
Q 036742 514 IKVDPP 519 (629)
Q Consensus 514 I~F~pp 519 (629)
+.+..+
T Consensus 199 ~~vD~~ 204 (367)
T COG1485 199 VNVDGP 204 (367)
T ss_pred EEecCC
Confidence 776655
No 317
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.05 E-value=0.0045 Score=59.79 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
+|++||||||||+++..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988765
No 318
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.02 E-value=0.0037 Score=64.14 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 036742 382 ILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
|+|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 319
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.00 E-value=0.00055 Score=61.60 Aligned_cols=22 Identities=45% Similarity=0.729 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|.||||+||||+|+.||..+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 320
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.99 E-value=0.0026 Score=69.19 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
|..+...+.+.+......++++.||.|||||++.++|...+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3445555655565545557899999999999999999988743
No 321
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.99 E-value=0.0034 Score=64.94 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
...++|.||+||||||+++.+++.+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 34689999999999999999998864
No 322
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.99 E-value=0.0034 Score=68.81 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
.-.+|.||||+|||+|++.|++.+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 35899999999999999999998743
No 323
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.98 E-value=0.02 Score=59.08 Aligned_cols=68 Identities=3% Similarity=0.133 Sum_probs=42.0
Q ss_pred CeEEEEEccchhhHHHHHHHHHHHhcc-CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742 461 NAMIVIYEVDKAAEHIQYLIKWIMDGY-TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 461 ~kVIIIDEID~Ls~~~q~aLlrilEe~-~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~ 529 (629)
..+|||||+..- .--...+..++... .-++-+|++|.....+++.+|.-+..+-+-..+..++..++.
T Consensus 99 ~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~ 167 (241)
T PF04665_consen 99 RFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYR 167 (241)
T ss_pred CeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHH
Confidence 459999998541 11223344444422 244668889988888999998877654433456666544443
No 324
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.97 E-value=0.002 Score=68.26 Aligned_cols=131 Identities=17% Similarity=0.231 Sum_probs=75.4
Q ss_pred Ccccc-cHHHHHHHHHHHH---cCCCC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 358 NGFIC-HRHEAQLLKELVV---DGNCP---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 358 ddIiG-~e~~~~~Lk~~L~---~g~~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
+++.+ .++.++.|++++- .+..+ .++|+|+.|+||++++..|... +|... +.+
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l-~G~~~-------------------~~~ 107 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNL-LGDYA-------------------TTA 107 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHH-hChhh-------------------ccC
Confidence 44443 4557778888874 22222 5789999999999999977655 46532 000
Q ss_pred ecccchhhHHHHHHHHHHHHH-HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhc--------------cCCCcEEEE
Q 036742 431 NVNLQANAKYALMGLVKEIRD-NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDG--------------YTDSCKLIL 495 (629)
Q Consensus 431 nas~~~~~k~~l~~~lrei~~-~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe--------------~~~~~~~IL 495 (629)
.++. .+.+.-. .+....-....++++||++.-.....+.|..+... +...+.+|+
T Consensus 108 ~~~~----------~~~~~~~~~f~~a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~ 177 (304)
T TIGR01613 108 VASL----------KMNEFQEHRFGLARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQ 177 (304)
T ss_pred Ccch----------hhhhccCCCchhhhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEE
Confidence 0000 0000000 11111122345899999975322223445444421 123456899
Q ss_pred EecCCccc---hHHHhhcceEeeccC
Q 036742 496 CCEDDVDI---IESVKTHCKVIKVDP 518 (629)
Q Consensus 496 itN~~~~I---~~aLrSR~~~I~F~p 518 (629)
+||....+ ..++.+|+.+|.|..
T Consensus 178 ~tN~~P~~~~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 178 STNHLPRIRGFDGGIKRRLRIIPFTK 203 (304)
T ss_pred EcCCCCccCCCChhheeeEEEEeccC
Confidence 99997775 578999999999863
No 325
>PRK14528 adenylate kinase; Provisional
Probab=96.96 E-value=0.014 Score=57.39 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.++|.||||+||||+|+.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999885
No 326
>PRK08118 topology modulation protein; Reviewed
Probab=96.95 E-value=0.0035 Score=60.82 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
..|++.||||+||||+|+.|++.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999973
No 327
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.016 Score=64.43 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||+|+||||++..||..+.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988763
No 328
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.01 Score=65.23 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+||+|+||||++..+|..+.
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998763
No 329
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.91 E-value=0.0045 Score=67.31 Aligned_cols=115 Identities=15% Similarity=0.239 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE-EecccchhhHHHHHHH
Q 036742 368 QLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE-LNVNLQANAKYALMGL 445 (629)
Q Consensus 368 ~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle-Inas~~~~~k~~l~~~ 445 (629)
..|+.+|+.-+.. .|+|+|||+|||+.++..|.+-|.|. |+- +|...
T Consensus 250 ~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~Gk--------------------ViSf~Ns~S----------- 298 (432)
T PF00519_consen 250 IALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK--------------------VISFVNSKS----------- 298 (432)
T ss_dssp HHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSE--------------------EE-GGGTTS-----------
T ss_pred HHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCE--------------------EEEecCCCC-----------
Confidence 4556666643333 58899999999999999999988554 221 11110
Q ss_pred HHHHHHHhccCcCCCCeEEEEEccchhhHHHH-HHHHHHHhccC-------------CCcEEEEEecCCcc---chHHHh
Q 036742 446 VKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQ-YLIKWIMDGYT-------------DSCKLILCCEDDVD---IIESVK 508 (629)
Q Consensus 446 lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q-~aLlrilEe~~-------------~~~~~ILitN~~~~---I~~aLr 508 (629)
.|=+.+-...+|.+|||+-.---.-. ..|+..++..+ .-.++++|+|..-. -..-|.
T Consensus 299 ------hFWLqPL~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLh 372 (432)
T PF00519_consen 299 ------HFWLQPLADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLH 372 (432)
T ss_dssp ------CGGGGGGCT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHC
T ss_pred ------cccccchhcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhh
Confidence 11122223346899999866533322 34566666432 11247778876433 356789
Q ss_pred hcceEeeccCC
Q 036742 509 THCKVIKVDPP 519 (629)
Q Consensus 509 SR~~~I~F~pp 519 (629)
||+..++|+.+
T Consensus 373 SRi~~f~F~n~ 383 (432)
T PF00519_consen 373 SRITCFEFPNP 383 (432)
T ss_dssp TTEEEEE--S-
T ss_pred heEEEEEcCCc
Confidence 99999999643
No 330
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.90 E-value=0.011 Score=61.74 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=40.3
Q ss_pred CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+.+++++...+..++.|+.++... ...++|.||+|+||||+++++...+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 446778877788888888888643 23689999999999999999988874
No 331
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.89 E-value=0.0073 Score=59.92 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+||||+|||+++..++....
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999997753
No 332
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.87 E-value=0.032 Score=60.22 Aligned_cols=43 Identities=26% Similarity=0.487 Sum_probs=33.7
Q ss_pred ccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 360 FICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 360 IiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++...+..+.|..+++.+. +||++|++|+||||++++++.++.
T Consensus 143 ~~~~~~~~~~L~~~v~~~~--nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 143 LLAEKKIKEFLEHAVISKK--NIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred hhhhHHHHHHHHHHHHcCC--cEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445556667777777543 799999999999999999998863
No 333
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.84 E-value=0.0017 Score=66.01 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.+||||+||+||||+|+.++.
T Consensus 14 ~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEEEECCCCCCHHHHHHhcCC
Confidence 589999999999999998874
No 334
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.83 E-value=0.058 Score=57.59 Aligned_cols=48 Identities=17% Similarity=-0.000 Sum_probs=38.0
Q ss_pred EeeccCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHH
Q 036742 513 VIKVDPPVTHEIMEVLIQIARKEDFD---LSMTFAAKIATKAKQNLRKAIM 560 (629)
Q Consensus 513 ~I~F~ppt~eei~~iL~~i~~kegl~---is~e~L~~Ia~~s~GDiR~AIn 560 (629)
.|.++.++.+|++.++.......-+. .++.+.+.+.-.++|++|....
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 78999999999999998887655443 3566777788888999998653
No 335
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.80 E-value=0.0099 Score=59.32 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..++|.||.|+||||+++.|+..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 468899999999999999998654
No 336
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.80 E-value=0.012 Score=68.43 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=27.9
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.||||||+-.+.-.....|++.+ +..+++||.....
T Consensus 267 dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~~ 302 (615)
T PRK10875 267 DVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDRD 302 (615)
T ss_pred CeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecchh
Confidence 39999999999877766666654 4678999987653
No 337
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.79 E-value=0.0064 Score=76.83 Aligned_cols=144 Identities=17% Similarity=0.263 Sum_probs=90.9
Q ss_pred ccccHHHHHHHH---HHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742 360 FICHRHEAQLLK---ELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA 436 (629)
Q Consensus 360 IiG~e~~~~~Lk---~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~ 436 (629)
++--+.+...+. .+...|..| +||-||.|||||.++..+|+.+ |..+ ++++-....
T Consensus 419 ~i~T~~vq~~la~~~~a~~~~~~p-illqG~tssGKtsii~~la~~~-g~~~-------------------vrinnheht 477 (1856)
T KOG1808|consen 419 YIITPRVQKNLADLARAISSGKFP-ILLQGPTSSGKTSIIKELARAT-GKNI-------------------VRINNHEHT 477 (1856)
T ss_pred eeccHHHHHHHHHHHHHHhcCCCC-eEEecCcCcCchhHHHHHHHHh-ccCc-------------------eehhccccc
Confidence 344444444444 444455554 9999999999999999999996 5542 444432221
Q ss_pred hhHHHHHHHHHHHHHHhccCc--------------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----CCcE-----
Q 036742 437 NAKYALMGLVKEIRDNLAITP--------------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----DSCK----- 492 (629)
Q Consensus 437 ~~k~~l~~~lrei~~~~~~~~--------------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----~~~~----- 492 (629)
.. .+.++.+.... ...+..+|+||+.....+..++|.++++.-. .+++
T Consensus 478 d~--------qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h 549 (1856)
T KOG1808|consen 478 DL--------QEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAH 549 (1856)
T ss_pred hH--------HHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccC
Confidence 11 11111111111 1124599999999999999999999987511 1222
Q ss_pred ----EEEEecCC------ccchHHHhhcceEeeccCCCHHHHHHHHHHHH
Q 036742 493 ----LILCCEDD------VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA 532 (629)
Q Consensus 493 ----~ILitN~~------~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~ 532 (629)
++.+=|.+ ..+..+|++|+..++|...+.+++..++...|
T Consensus 550 ~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 550 PEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred cchhhhhhccCccccchhhhhhhcccccchhhhhhhcCchhhhhhhcccc
Confidence 22233333 12567888999999999999988888887654
No 338
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.77 E-value=0.014 Score=56.59 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|.||||+||||+|+.||..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999986
No 339
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.76 E-value=0.0035 Score=61.88 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+...+.+..++.... -.++.||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344455555555432 38899999999998877777776
No 340
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.76 E-value=0.0024 Score=63.26 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=32.5
Q ss_pred CCeEEEEEccchhhHH-------HHHHHHHHHh-ccCCCcEEEEEecCCccchHHHhhcce
Q 036742 460 SNAMIVIYEVDKAAEH-------IQYLIKWIMD-GYTDSCKLILCCEDDVDIIESVKTHCK 512 (629)
Q Consensus 460 ~~kVIIIDEID~Ls~~-------~q~aLlrilE-e~~~~~~~ILitN~~~~I~~aLrSR~~ 512 (629)
.+.||||||++.+.+. ....+ ..+. --..+..|||+|..+..|+..++..+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~g~diiliTQ~~~~id~~ir~lve 138 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHYGWDIILITQSPSQIDKFIRDLVE 138 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGGCCCTT-EEEEEES-GGGB-HHHHCCEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHh
Confidence 4569999999988321 12333 3333 233567899999999999999987663
No 341
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.76 E-value=0.00095 Score=61.66 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|+||||+||||+|+.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999999885
No 342
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0058 Score=57.99 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+||||++++|+..+
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 343
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.75 E-value=0.016 Score=70.46 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHH
Q 036742 362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA 441 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~ 441 (629)
..++..+.+..++.... .++|.|++||||||+.+++...+...+. .++-+.+. ..-...+
T Consensus 347 Ls~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~G~-----------------~V~~~ApT-GkAA~~L 406 (988)
T PRK13889 347 LSGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAAGY-----------------EVRGAALS-GIAAENL 406 (988)
T ss_pred CCHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHcCC-----------------eEEEecCc-HHHHHHH
Confidence 34555556666655433 5789999999999999887765532221 02222221 1100000
Q ss_pred ------HHHHHHHHHHHhcc--CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 442 ------LMGLVKEIRDNLAI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 442 ------l~~~lrei~~~~~~--~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
....+..+...+.. .......||||||+-.+.......|++..+. ..+++||+...
T Consensus 407 ~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD~ 470 (988)
T PRK13889 407 EGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDP 470 (988)
T ss_pred hhccCcchhhHHHHHhhhcccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECCH
Confidence 00111111111111 0112345999999999987777777665543 56889988754
No 344
>PRK14532 adenylate kinase; Provisional
Probab=96.75 E-value=0.028 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+|+|.||||+||||+|+.||+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999985
No 345
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.73 E-value=0.011 Score=61.92 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
|-|+|+|.||+|||++|+.|+..+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 56899999999999999999998754
No 346
>PRK14974 cell division protein FtsY; Provisional
Probab=96.73 E-value=0.021 Score=61.72 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||+|+||||++..+|..+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 347
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.73 E-value=0.0084 Score=58.37 Aligned_cols=53 Identities=6% Similarity=0.006 Sum_probs=33.4
Q ss_pred CeEEEEEccc-hhhHHHHHHHHHHHhccCC--CcEEEEEecCCccchHHHhhcceEe
Q 036742 461 NAMIVIYEVD-KAAEHIQYLIKWIMDGYTD--SCKLILCCEDDVDIIESVKTHCKVI 514 (629)
Q Consensus 461 ~kVIIIDEID-~Ls~~~q~aLlrilEe~~~--~~~~ILitN~~~~I~~aLrSR~~~I 514 (629)
+.++++||.- .|.......+..++..... ...+|+++++.+.+. .+..|+.++
T Consensus 116 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~-~~~d~~~~l 171 (180)
T cd03214 116 PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA-RYADRVILL 171 (180)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 3499999986 4666666667666665433 467788887765433 333444443
No 348
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.73 E-value=0.01 Score=64.58 Aligned_cols=57 Identities=16% Similarity=0.359 Sum_probs=39.2
Q ss_pred EEEEEccchhhHHHHHHHHHHHhc-cCCCcEEEEEecCCcc--------------chHHHhhcceEeeccCC
Q 036742 463 MIVIYEVDKAAEHIQYLIKWIMDG-YTDSCKLILCCEDDVD--------------IIESVKTHCKVIKVDPP 519 (629)
Q Consensus 463 VIIIDEID~Ls~~~q~aLlrilEe-~~~~~~~ILitN~~~~--------------I~~aLrSR~~~I~F~pp 519 (629)
||.+||+.--.-...-.|+++++. +..++.++.|+|+... .+.-|..||.++.+..+
T Consensus 196 lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~ 267 (467)
T KOG2383|consen 196 LLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDSG 267 (467)
T ss_pred eeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCChHHHhhcchhhhhhhhHHHHHHHhheEEecCCc
Confidence 899999988776666778888874 4455666667776432 13456778877766553
No 349
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.025 Score=62.32 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
..|+|.||+|+||||++..||..+...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 368899999999999999999987533
No 350
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.72 E-value=0.014 Score=61.10 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.|+||+||||+|+.|++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 47899999999999999999986
No 351
>PRK06762 hypothetical protein; Provisional
Probab=96.71 E-value=0.011 Score=56.53 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+|+||+||||+|+.+++.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 352
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.70 E-value=0.0097 Score=58.14 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+||||+++.+++|..+
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 48999999999999999999865
No 353
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.68 E-value=0.013 Score=69.59 Aligned_cols=115 Identities=12% Similarity=0.142 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHH
Q 036742 362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYA 441 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~ 441 (629)
..++..+.+..++..+ +.++|.|+||||||++++++...+...+. .++-+.+. ..... .
T Consensus 353 Ls~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~-----------------~V~~~ApT-g~Aa~-~ 411 (744)
T TIGR02768 353 LSEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGY-----------------RVIGAALS-GKAAE-G 411 (744)
T ss_pred CCHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCC-----------------eEEEEeCc-HHHHH-H
Confidence 3455666666665543 36889999999999999999876643221 12222221 11110 0
Q ss_pred HHH-------HHHHHHHHhcc--CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 442 LMG-------LVKEIRDNLAI--TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 442 l~~-------~lrei~~~~~~--~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
+.+ .+..+...+.. .......||||||+-.+.......|+..... ..+++||+...
T Consensus 412 L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD~ 476 (744)
T TIGR02768 412 LQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGDP 476 (744)
T ss_pred HHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCh
Confidence 000 01111111111 1112345999999999987766666654432 46788888743
No 354
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.63 E-value=0.014 Score=67.51 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=27.1
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.||||||+-.+.......|++.+ ...+++||+...
T Consensus 261 dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 261 DVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred cEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 39999999999877666665554 467889998764
No 355
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.60 E-value=0.02 Score=57.31 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=26.6
Q ss_pred HHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 370 LKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 370 Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
|-.++..|-.+ .++|+|+||+|||+++..+|.++.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555544333 378999999999999999998863
No 356
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.60 E-value=0.012 Score=57.10 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=30.0
Q ss_pred CeEEEEEccc-hhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742 461 NAMIVIYEVD-KAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503 (629)
Q Consensus 461 ~kVIIIDEID-~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I 503 (629)
+.|+++||.. .|.......+..++........+|+++++...+
T Consensus 117 p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 117 APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 4599999986 456666666666665544456788888877654
No 357
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.58 E-value=0.012 Score=64.76 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
...++|.||+|||||+++++|++.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34689999999999999999999863
No 358
>PRK13808 adenylate kinase; Provisional
Probab=96.57 E-value=0.033 Score=60.08 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|||+||||+||||+++.|+..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999985
No 359
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.56 E-value=0.02 Score=63.97 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=76.5
Q ss_pred cccccHHHHHHHHHHHHcCC---CC---------eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC-Cc
Q 036742 359 GFICHRHEAQLLKELVVDGN---CP---------HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS-SA 425 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~~g~---~p---------~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s-S~ 425 (629)
.|.|++++++.+.-+|-.|. +| ++||.|.|||.|+-|.+-+-+-. .-.+| ..+ ..
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-PIaVY-----------TSGKGS 399 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-PIAVY-----------TSGKGS 399 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-ceEEE-----------ecCCCc
Confidence 57899999999998886543 22 69999999999999999665431 11110 000 00
Q ss_pred ceEEEecccchhhHHHHHHHHHHHHHHhccCc----CCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742 426 HHVELNVNLQANAKYALMGLVKEIRDNLAITP----EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------- 488 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei~~~~~~~~----~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------- 488 (629)
...-+.++.-+.. ...+|-..+ -..+.|++|||+|.|.++..-++...||.-+
T Consensus 400 SAAGLTASV~RD~----------~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LN 469 (729)
T KOG0481|consen 400 SAAGLTASVIRDP----------STREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLN 469 (729)
T ss_pred ccccceeeEEecC----------CcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeec
Confidence 0111112111100 001111111 1134599999999998877777777776432
Q ss_pred CCcEEEEEecCC-----------c--cchHHHhhcce
Q 036742 489 DSCKLILCCEDD-----------V--DIIESVKTHCK 512 (629)
Q Consensus 489 ~~~~~ILitN~~-----------~--~I~~aLrSR~~ 512 (629)
+.+.++.++|.. + +++++|.|||-
T Consensus 470 SRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFD 506 (729)
T KOG0481|consen 470 SRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFD 506 (729)
T ss_pred chhhhhhhcCCccccccccCCcccccchhhhHhhhcc
Confidence 334455566642 1 25789999984
No 360
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.56 E-value=0.069 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAk 401 (629)
.++++.||+|+|||+.+...+-
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCccHHHHHHHHH
Confidence 4699999999999999885554
No 361
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.56 E-value=0.0019 Score=58.00 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999995
No 362
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.55 E-value=0.019 Score=57.79 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=25.9
Q ss_pred HHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 370 LKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 370 Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
|-+++..|-.+ .++|+||||+|||++|..+|.++.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~ 48 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA 48 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44445444333 478999999999999999998753
No 363
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.017 Score=65.60 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+||||++..||..+
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999865
No 364
>PF13245 AAA_19: Part of AAA domain
Probab=96.54 E-value=0.0032 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=16.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.+++.||||||||+++..++.++
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999995544444444
No 365
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.54 E-value=0.0023 Score=60.94 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|+|+|||||||+|++||+.+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999997
No 366
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.54 E-value=0.024 Score=64.24 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=41.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.+|+++...++.++.|+.++.... ..+||+||+|+||||+++++..++.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 45678888888888889998886533 3588999999999999999888764
No 367
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.023 Score=62.14 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||++..||..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999875
No 368
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.013 Score=56.66 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCeEEEEEccc-hhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742 460 SNAMIVIYEVD-KAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503 (629)
Q Consensus 460 ~~kVIIIDEID-~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I 503 (629)
...+|++||.- .|.......+.+++.+......+|+++++...+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 34599999975 456666666666666554456788888876654
No 369
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.53 E-value=0.011 Score=59.62 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAk 401 (629)
+.++|+||.|+||||+.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4689999999999999999984
No 370
>PRK07261 topology modulation protein; Provisional
Probab=96.52 E-value=0.007 Score=58.83 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+|+.|+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999885
No 371
>PRK00625 shikimate kinase; Provisional
Probab=96.52 E-value=0.022 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+|+|.|.||+||||+++.+|+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999997
No 372
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.51 E-value=0.017 Score=54.41 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=53.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~ 460 (629)
.+.|.||.|+||||++++++..+....- .+.+.....+..+.. ...+.. ....+ ...+. ..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G---------~i~~~~~~~i~~~~~-lS~G~~-~rv~l----aral~----~~ 88 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEG---------IVTWGSTVKIGYFEQ-LSGGEK-MRLAL----AKLLL----EN 88 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCce---------EEEECCeEEEEEEcc-CCHHHH-HHHHH----HHHHh----cC
Confidence 5789999999999999999986421110 000000001111111 111111 00111 11111 13
Q ss_pred CeEEEEEccc-hhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742 461 NAMIVIYEVD-KAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503 (629)
Q Consensus 461 ~kVIIIDEID-~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I 503 (629)
..++++||.. .+.......+..++.+. ...+|+++++.+.+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 4599999986 45666666666666554 34677777765443
No 373
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.50 E-value=0.069 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++++|+||+||||+|+.+|..+
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999985
No 374
>PRK14527 adenylate kinase; Provisional
Probab=96.50 E-value=0.055 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..++|+||||+||||+|+.+|..+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999886
No 375
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.49 E-value=0.029 Score=63.60 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=86.6
Q ss_pred cccccHHHHHHHHHHHHcCC---------CC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc---C
Q 036742 359 GFICHRHEAQLLKELVVDGN---------CP---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA---S 423 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~~g~---------~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~---s 423 (629)
.|.|++.+++.|.-+|-.|. ++ +||+.|.|-+.|+-|.+.+.+-.- .. +... +
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAp-lA-----------I~TTGRGS 369 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAP-LA-----------IATTGRGS 369 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccc-cc-----------ccccCCCC
Confidence 58899999998887775332 11 699999999999999999887531 11 1111 1
Q ss_pred Ccc--eEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742 424 SAH--HVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------- 488 (629)
Q Consensus 424 S~~--vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------- 488 (629)
|+- ..-+......|.. +-.....--....|++|||+|.|+....-++..+||...
T Consensus 370 SGVGLTAAVTtD~eTGER----------RLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLN 439 (818)
T KOG0479|consen 370 SGVGLTAAVTTDQETGER----------RLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLN 439 (818)
T ss_pred CCccceeEEeeccccchh----------hhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhc
Confidence 111 1111111222211 111111111224599999999999888888888888643
Q ss_pred CCcEEEEEecCCcc-------------chHHHhhcce--EeeccCCCH
Q 036742 489 DSCKLILCCEDDVD-------------IIESVKTHCK--VIKVDPPVT 521 (629)
Q Consensus 489 ~~~~~ILitN~~~~-------------I~~aLrSR~~--~I~F~ppt~ 521 (629)
..|.++.++|..+. +.+.|.+||- .|.+...+.
T Consensus 440 ARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~ 487 (818)
T KOG0479|consen 440 ARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDA 487 (818)
T ss_pred cceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccc
Confidence 55778888886421 5788999983 344444443
No 376
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.48 E-value=0.018 Score=61.41 Aligned_cols=26 Identities=42% Similarity=0.626 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
+.++|.||+|+|||++|..||+.+.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 35889999999999999999998643
No 377
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.47 E-value=0.027 Score=57.06 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=24.8
Q ss_pred HHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 370 LKELVVDGNCP--HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 370 Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL 403 (629)
|-++|..|-.+ .++++|+||+|||+++..++.+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44444444222 58899999999999999997653
No 378
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.47 E-value=0.034 Score=62.42 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=45.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDA 407 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~ 407 (629)
...+|++++..+.....+..++... ..-+|++||.|+||||+..++..+++...
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNRP-QGLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 4667899999999889999998863 33588999999999999999999986543
No 379
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.46 E-value=0.0087 Score=58.64 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||++++|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998874
No 380
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.45 E-value=0.018 Score=64.60 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 368 QLLKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 368 ~~Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
..|-+++..|-.+ .++|+|+||+|||+++..+|..+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555555443 478999999999999999998763
No 381
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.45 E-value=0.0071 Score=58.12 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999864
No 382
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.45 E-value=0.038 Score=61.79 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+|++|+||||++..+|..+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999999999998874
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.43 E-value=0.011 Score=67.91 Aligned_cols=42 Identities=7% Similarity=0.032 Sum_probs=33.6
Q ss_pred CCeEEEEEccc-hhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 460 SNAMIVIYEVD-KAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 460 ~~kVIIIDEID-~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
+++++||||+- .|.++.+..|+..+.+-...+-||-+++++.
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT 575 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchh
Confidence 45699999995 5688888899999887667788888887653
No 384
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.41 E-value=0.024 Score=59.87 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 036742 382 ILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++|.||+|+|||++|..||+.+.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~ 24 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLN 24 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999999863
No 385
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.40 E-value=0.0058 Score=59.99 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++++..+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57799999999999999999864
No 386
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.39 E-value=0.053 Score=49.98 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|.|+|||||||+|+.||+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999986
No 387
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.34 E-value=0.034 Score=64.08 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=40.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+.+|+++...++.++.|.+++... ...|||+||+|+||||+..++..++.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~~-~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHKP-QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 346788888888888888888643 24689999999999999999998874
No 388
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.32 E-value=0.038 Score=53.50 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=30.5
Q ss_pred CCCeEEEEEccchhhH-H--HHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742 459 VSNAMIVIYEVDKAAE-H--IQYLIKWIMDGYTDSCKLILCCEDDVD 502 (629)
Q Consensus 459 ~~~kVIIIDEID~Ls~-~--~q~aLlrilEe~~~~~~~ILitN~~~~ 502 (629)
....+|||||+-.... + ..+.+..+++.-+...-+|+|......
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 3456999999977622 1 234456677777788899999976543
No 389
>PRK13947 shikimate kinase; Provisional
Probab=96.31 E-value=0.0034 Score=60.13 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
.+|+|.|+|||||||+|+.||+.+ +.
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l-g~ 27 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL-SF 27 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh-CC
Confidence 469999999999999999999997 44
No 390
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.30 E-value=0.031 Score=57.98 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++++||||||||+++..+|...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999988764
No 391
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.072 Score=60.21 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-cchhhHHHHHHHHHHHHHHhcc
Q 036742 377 GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAI 455 (629)
Q Consensus 377 g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas-~~~~~k~~l~~~lrei~~~~~~ 455 (629)
....+++++||||||||+++++++.+ .... ..++.. ............+++... .
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~ 71 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE--GAEF-------------------LSINGPEILSKYVGESELRLRELFE---E 71 (494)
T ss_pred CCCCCceeeCCCCCchhHHHHHHHhc--cCcc-------------------cccCcchhhhhhhhHHHHHHHHHHH---H
Confidence 34558999999999999999999987 2210 111111 000000011122222222 1
Q ss_pred CcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhccCCCc-EEEEEecCCccchHHHhhcc---eEeeccCCC
Q 036742 456 TPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGYTDSC-KLILCCEDDVDIIESVKTHC---KVIKVDPPV 520 (629)
Q Consensus 456 ~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~~~~~-~~ILitN~~~~I~~aLrSR~---~~I~F~ppt 520 (629)
.......++++||+|.+.+ .....|...++...... .++..+|.+..++++++.-. ..+.+..+.
T Consensus 72 a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (494)
T COG0464 72 AEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPD 151 (494)
T ss_pred HHHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCC
Confidence 1122226999999999833 23455666665444222 22334666666777776543 245566666
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 521 THEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 521 ~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
.....+++........+ -.+..+..++..+.|....-+..|
T Consensus 152 ~~~~~ei~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 152 EAGRLEILQIHTRLMFL-GPPGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred HHHHHHHHHHHHhcCCC-cccccHHHHHHhcCCccHHHHHHH
Confidence 65555555544332222 124567778877776554444443
No 392
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.28 E-value=0.0034 Score=58.74 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+|+|+|+||+||||+|+.+|..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 393
>PRK06547 hypothetical protein; Provisional
Probab=96.27 E-value=0.006 Score=59.62 Aligned_cols=34 Identities=38% Similarity=0.523 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+...+..+....|+|.|++|+||||+|+.|++.+
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334455555578899999999999999999985
No 394
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.25 E-value=0.0059 Score=64.83 Aligned_cols=39 Identities=44% Similarity=0.605 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++..+.|..+++.+ .++|++||+|+||||++++++..+.
T Consensus 119 ~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 119 AAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 44567788888754 3799999999999999999998873
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.25 E-value=0.019 Score=57.25 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||+|+||||++-.+|..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHh
Confidence 477999999999999888888764
No 396
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.24 E-value=0.029 Score=54.07 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=28.1
Q ss_pred CeEEEEEccch-hhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 461 NAMIVIYEVDK-AAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 461 ~kVIIIDEID~-Ls~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
..++++||... |.......+..++.+. ...+|+++++..
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 45999999864 5666677777777654 356888888764
No 397
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.20 E-value=0.0043 Score=59.99 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.++|.||||+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999886
No 398
>PRK10436 hypothetical protein; Provisional
Probab=96.19 E-value=0.018 Score=64.82 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+.+|+++...+..++.|+.++... ...+|++||.|+||||++.++..++.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~~-~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQP-QGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHhc-CCeEEEECCCCCChHHHHHHHHHhhC
Confidence 347788888888888888888642 33689999999999999999888874
No 399
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.19 E-value=0.073 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|.|++|+|||+++..++..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988753
No 400
>PRK03839 putative kinase; Provisional
Probab=96.18 E-value=0.0039 Score=60.49 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+++.||+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999996
No 401
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.15 E-value=0.024 Score=62.08 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 369 LLKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 369 ~Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|-.+|..|-.+ .++|+|+||+|||+++..+|..+.
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344555444433 488999999999999999998763
No 402
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.13 E-value=0.063 Score=65.93 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL 442 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l 442 (629)
.++..+.+..+.. .-+.++|.|++||||||+.+++...+...++ .++-+.+. ..-.. .+
T Consensus 383 s~eQ~~Av~~i~~--~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~-----------------~V~g~ApT-gkAA~-~L 441 (1102)
T PRK13826 383 SDEQKTAIEHVAG--PARIAAVVGRAGAGKTTMMKAAREAWEAAGY-----------------RVVGGALA-GKAAE-GL 441 (1102)
T ss_pred CHHHHHHHHHHhc--cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-----------------eEEEEcCc-HHHHH-HH
Confidence 4454555555432 2346889999999999999999876533221 12222221 11110 11
Q ss_pred HH-------HHHHHHHHh-cc-CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 443 MG-------LVKEIRDNL-AI-TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 443 ~~-------~lrei~~~~-~~-~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+ .+..+...+ .. ..-..+.||||||+-.+.......|++..+. ..+++||+...
T Consensus 442 ~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 442 EKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred HHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 00 011110000 00 1112245999999999988877777777653 56888888754
No 403
>PF13479 AAA_24: AAA domain
Probab=96.13 E-value=0.0095 Score=59.92 Aligned_cols=19 Identities=58% Similarity=0.826 Sum_probs=17.4
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMAL 399 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraL 399 (629)
.++||||||+|||++|..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 5899999999999999876
No 404
>COG5275 BRCT domain type II [General function prediction only]
Probab=96.13 E-value=0.002 Score=64.14 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=65.5
Q ss_pred CcccccccCCCCccc-CCCCccccccccCCCc---cccccccccccCccchhhhhhhcCCCCCCCCCCccccCChhhHhH
Q 036742 261 ANLVVSRQSSNGKFS-SEGSKTSYASVKSSTS---STKFANNRRKTGQADAWFSCMKKGSCRKSKSSPEKRAFDETSFIQ 336 (629)
Q Consensus 261 ~~~~~~~~~~~g~~~-~~~sk~s~~~~~~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~ie 336 (629)
.+.+++++|| |+++ .+|+|++.++.+.-++ ++++.+..++.+|+++|+.+++..++-++. ....+. --+
T Consensus 175 ~a~~lvk~yG-grvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~LI~~~pa~gg~-gaaaek-----a~~ 247 (276)
T COG5275 175 DAKTLVKVYG-GRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSLIKDTPAAGGG-GAAAEK-----ATE 247 (276)
T ss_pred hHHHHHHHhC-CeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHHHhcCcccCCc-hHHHHH-----HHH
Confidence 3578999999 9998 6999999998877644 888999999999999999999988886654 222111 111
Q ss_pred HHHH----hhccCchhhhccCCCCCCc
Q 036742 337 KAVV----IEKLRPFWADKHQPSSLNG 359 (629)
Q Consensus 337 ~a~v----~~~~~~lW~eKyrP~tfdd 359 (629)
++.. .-.....|.++|++.+-..
T Consensus 248 K~e~~~~~~s~s~~~~~~k~k~~s~~~ 274 (276)
T COG5275 248 KAESRDECGSASSGVMDDSNKKESQPS 274 (276)
T ss_pred HHHhhhhhhhhhhhhhhcccccccccc
Confidence 2111 1122356889998876543
No 405
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.13 E-value=0.0035 Score=59.74 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|.||+|+||||+|+.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999986
No 406
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.11 E-value=0.059 Score=50.60 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.+++.|++|+|||++++++...
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999754
No 407
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.09 E-value=0.055 Score=55.24 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|||||+++..++..+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999986666554
No 408
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.042 Score=58.54 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh-CCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHH
Q 036742 367 AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY-GDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGL 445 (629)
Q Consensus 367 ~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~-g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~ 445 (629)
-+.|.+|+..|- .++++|+.|+|||+++..++-.+. |... +.-.+...+.|+++++.+.+.. +...
T Consensus 79 P~lId~~fr~g~--~~~~~gdsg~GKttllL~l~IalaaG~~l--------fG~~v~epGkvlyvslEl~re~---~L~R 145 (402)
T COG3598 79 PQLIDEFFRKGY--VSILYGDSGVGKTTLLLYLCIALAAGKNL--------FGNKVKEPGKVLYVSLELYRED---ILER 145 (402)
T ss_pred hhhhhHHhhcCe--eEEEecCCcccHhHHHHHHHHHHHhhHHH--------hcccccCCCeEEEEEeccChHH---HHHH
Confidence 356677777765 488999999999998776553331 1111 0012455677999999776652 3344
Q ss_pred HHHHHHHhccC
Q 036742 446 VKEIRDNLAIT 456 (629)
Q Consensus 446 lrei~~~~~~~ 456 (629)
++.+...+.+.
T Consensus 146 l~~v~a~mgLs 156 (402)
T COG3598 146 LEPVRARMGLS 156 (402)
T ss_pred HHHHHHHcCCC
Confidence 45555444443
No 409
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.06 E-value=0.0089 Score=65.22 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 377 GNCPHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 377 g~~p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
|....++|+||+|||||++++.+++.+..
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44457899999999999999999998743
No 410
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.06 E-value=0.016 Score=57.19 Aligned_cols=53 Identities=6% Similarity=0.025 Sum_probs=33.1
Q ss_pred CeEEEEEccch-hhHHHHHHHHHHHhccC-CCcEEEEEecCCccchHHHhhcceE
Q 036742 461 NAMIVIYEVDK-AAEHIQYLIKWIMDGYT-DSCKLILCCEDDVDIIESVKTHCKV 513 (629)
Q Consensus 461 ~kVIIIDEID~-Ls~~~q~aLlrilEe~~-~~~~~ILitN~~~~I~~aLrSR~~~ 513 (629)
..||++||... |.......+.+++.+.. ...-+|+++++.......+..|+.+
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~ 184 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL 184 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEE
Confidence 45999999764 55666666666666543 3556888888765433334445443
No 411
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.05 E-value=0.0061 Score=50.30 Aligned_cols=22 Identities=45% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.|.|++|+||||++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 412
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.04 E-value=0.045 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.+++.|++|+|||++++.+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998854
No 413
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.04 E-value=0.0064 Score=62.98 Aligned_cols=53 Identities=34% Similarity=0.405 Sum_probs=37.3
Q ss_pred CCCCCcccccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 354 PSSLNGFICHRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
+.+++++.-.....+.+.+++... ...++||.||+|+||||++.+++.++...
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 447788876665555555555432 12379999999999999999999987443
No 414
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.04 E-value=0.05 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
+++.|++|+|||++++.+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 415
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.03 E-value=0.22 Score=52.98 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=23.1
Q ss_pred CCC-eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 378 NCP-HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 378 ~~p-~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..| .++|.|++||||||+|..||..+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344 68899999999999999999997
No 416
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.03 E-value=0.05 Score=53.77 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAke 402 (629)
.+.+||.||+|+|||+|-..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Confidence 357999999999999999988864
No 417
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.03 E-value=0.14 Score=47.75 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
|+|.|++|+|||+++..++..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998864
No 418
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.02 E-value=0.0084 Score=56.33 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.|+.|+||||+++.+++.+
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 419
>PRK06696 uridine kinase; Validated
Probab=96.02 E-value=0.0099 Score=60.08 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHc---CCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 364 RHEAQLLKELVVD---GNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 364 e~~~~~Lk~~L~~---g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+++++.|.+.+.. +...-|.|.|++|+||||+|+.|+..|.
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556666666642 2233577999999999999999999984
No 420
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.01 E-value=0.057 Score=51.21 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
|++.|++|+|||+++..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~ 21 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTN 21 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999988764
No 421
>PRK14530 adenylate kinase; Provisional
Probab=96.01 E-value=0.0055 Score=61.46 Aligned_cols=24 Identities=38% Similarity=0.645 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.|+|.||||+||||+|+.||+.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999986
No 422
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.01 E-value=0.077 Score=69.22 Aligned_cols=122 Identities=19% Similarity=0.209 Sum_probs=71.1
Q ss_pred CCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742 357 LNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA 436 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~ 436 (629)
+..+...+...+.+..++..+ .+.++|.|++|||||++++++...+...+. .++-+.++ .+
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~s~-~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~-----------------~V~~lAPT-gr 485 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFTST-KRFIIINGFGGTGSTEIAQLLLHLASEQGY-----------------EIQIITAG-SL 485 (1960)
T ss_pred cccCCCCHHHHHHHHHHHhCC-CCeEEEEECCCCCHHHHHHHHHHHHHhcCC-----------------eEEEEeCC-HH
Confidence 345555677777787777753 346889999999999999999987643322 12323222 11
Q ss_pred hhHHHHHH----------HHHHH--------HHHhccC-cC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEE
Q 036742 437 NAKYALMG----------LVKEI--------RDNLAIT-PE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILC 496 (629)
Q Consensus 437 ~~k~~l~~----------~lrei--------~~~~~~~-~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILi 496 (629)
..+.+-.. .+... ...|... .. ..+.||||||+..+.......|++..+. .++++||+
T Consensus 486 AA~~L~e~~g~~A~Ti~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~--~garvVlv 563 (1960)
T TIGR02760 486 SAQELRQKIPRLASTFITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQ--HNSKLILL 563 (1960)
T ss_pred HHHHHHHHhcchhhhHHHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhh--cCCEEEEE
Confidence 11111000 01100 0011100 11 2345999999999988777777766542 56788888
Q ss_pred ecC
Q 036742 497 CED 499 (629)
Q Consensus 497 tN~ 499 (629)
...
T Consensus 564 GD~ 566 (1960)
T TIGR02760 564 NDS 566 (1960)
T ss_pred cCh
Confidence 754
No 423
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.99 E-value=0.0065 Score=60.88 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999873
No 424
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.98 E-value=0.0051 Score=57.67 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
++|+|+||+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999985
No 425
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.017 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDA 407 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~ 407 (629)
.|+++|.|||||||++..|+ ++ +..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l-g~~ 26 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL-GYK 26 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh-CCc
Confidence 48899999999999999999 64 554
No 426
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=95.96 E-value=0.077 Score=49.47 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
|+|.|++|+|||+|+..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988764
No 427
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.96 E-value=0.054 Score=50.51 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|.|++|+|||+|++.+...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999988754
No 428
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.93 E-value=0.095 Score=64.87 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCCcHHHHHH-HHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc
Q 036742 379 CPHILIKGQSGSGKRALAM-ALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP 457 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAr-aLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~ 457 (629)
.+.++++||||+|||.+.- ++-.++. . .++.+|-+........+ ..+..-..-+...+
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~-~-------------------ev~~~Nfs~~t~T~s~l-s~Ler~t~yy~~tg 1552 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELI-T-------------------EVKYFNFSTCTMTPSKL-SVLERETEYYPNTG 1552 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhh-e-------------------eeeEEeeccccCCHHHH-HHHHhhceeeccCC
Confidence 4479999999999998532 3333321 1 26777776443332122 22222122121111
Q ss_pred --------CCCCeEEEEEccchh-------hHHHHHHHHHHHhccC------------CCcEEEEEecCCcc-----chH
Q 036742 458 --------EVSNAMIVIYEVDKA-------AEHIQYLIKWIMDGYT------------DSCKLILCCEDDVD-----IIE 505 (629)
Q Consensus 458 --------~~~~kVIIIDEID~L-------s~~~q~aLlrilEe~~------------~~~~~ILitN~~~~-----I~~ 505 (629)
.....|||.|||. | .+...-+|+.++|.-. .++.++.+||.+.+ ..+
T Consensus 1553 ~~~l~PK~~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~e 1631 (3164)
T COG5245 1553 VVRLYPKPVVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYE 1631 (3164)
T ss_pred eEEEccCcchhheEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHH
Confidence 1123499999998 4 2233344556666411 23345557887654 357
Q ss_pred HHhhcceEeeccCCCHHHHHHHHHHH
Q 036742 506 SVKTHCKVIKVDPPVTHEIMEVLIQI 531 (629)
Q Consensus 506 aLrSR~~~I~F~ppt~eei~~iL~~i 531 (629)
.+.++...+.+..|.-..+..+....
T Consensus 1632 Rf~r~~v~vf~~ype~~SL~~Iyea~ 1657 (3164)
T COG5245 1632 RFIRKPVFVFCCYPELASLRNIYEAV 1657 (3164)
T ss_pred HHhcCceEEEecCcchhhHHHHHHHH
Confidence 78888777777777777777666543
No 429
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.92 E-value=0.11 Score=66.57 Aligned_cols=117 Identities=10% Similarity=0.105 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH---
Q 036742 366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL--- 442 (629)
Q Consensus 366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l--- 442 (629)
..+.+..++.. .-+.++|.|.+||||||+++++...+..... .....++-+.+. .+..+.+-
T Consensus 972 Q~~Av~~il~s-~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~-------------~~~~~V~glAPT-grAAk~L~e~G 1036 (1747)
T PRK13709 972 QRAATRMILES-TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPE-------------SERPRVVGLGPT-HRAVGEMRSAG 1036 (1747)
T ss_pred HHHHHHHHHhC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhc-------------ccCceEEEECCc-HHHHHHHHhcC
Confidence 33444444443 2347899999999999999999877531100 000012222221 11110000
Q ss_pred --HHHHHHHHHH---hcc---CcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 443 --MGLVKEIRDN---LAI---TPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 443 --~~~lrei~~~---~~~---~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
...+..++.. +.. .....+.||||||+-.+.......|++.++. .++++||+...
T Consensus 1037 i~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~ 1099 (1747)
T PRK13709 1037 VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDT 1099 (1747)
T ss_pred cchhhHHHHhcccccccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecch
Confidence 0011111110 000 1112346999999999988877777777653 36889998764
No 430
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.91 E-value=0.089 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
+++.|++|+|||++++.++..
T Consensus 5 i~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988754
No 431
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.90 E-value=0.14 Score=54.14 Aligned_cols=186 Identities=12% Similarity=0.152 Sum_probs=101.4
Q ss_pred hccCCC-CCCcccccHHH---HHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 350 DKHQPS-SLNGFICHRHE---AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 350 eKyrP~-tfddIiG~e~~---~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
.+-.|. ...++++-..+ +..+.-.-..|. ...+||-+|.|||+.++.+|..- ..
T Consensus 63 ~q~~~~~~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~-p~------------------- 120 (297)
T COG2842 63 VQAALEKLAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSN-PN------------------- 120 (297)
T ss_pred cccccccccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccC-cc-------------------
Confidence 333433 56778876664 334444444544 57899999999999999888752 22
Q ss_pred ceEEEecccchhhHHHHHH-----------HHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEE
Q 036742 426 HHVELNVNLQANAKYALMG-----------LVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLI 494 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~-----------~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~I 494 (629)
.+.+.++.......++.. .+................+|++||+|.|...+.+.|+++.++ ..+-++
T Consensus 121 -~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~--~Gi~~v 197 (297)
T COG2842 121 -ALLIEADPSYTALVLILIICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK--TGIGVV 197 (297)
T ss_pred -ceeecCChhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh--hCceEE
Confidence 122222211111000000 000000000000122345999999999999999999999885 456677
Q ss_pred EEecCCc--------cchHHHhhcce---EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 036742 495 LCCEDDV--------DIIESVKTHCK---VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALE 563 (629)
Q Consensus 495 LitN~~~--------~I~~aLrSR~~---~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq 563 (629)
++.+..- ...-.+.+|.. .+...-++.+++..+....+.. ..+..+..+.....|.+|..-.+|.
T Consensus 198 LvG~prL~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~~----~~~~~v~~~~~~~~g~~~~L~~~l~ 273 (297)
T COG2842 198 LVGMPRLFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAALVLPT----EDELVLMQVIKETEGNIRRLDKILA 273 (297)
T ss_pred EecChHHHhccccchHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHhhCcc----chHHHHHHHHHhcchhHhHHHHHHh
Confidence 7776531 11122233321 1222223334554444433221 3567777888888899888777775
Q ss_pred H
Q 036742 564 A 564 (629)
Q Consensus 564 ~ 564 (629)
-
T Consensus 274 ~ 274 (297)
T COG2842 274 G 274 (297)
T ss_pred h
Confidence 4
No 432
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.90 E-value=0.061 Score=53.01 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
-|+|.|++|+|||+|++.++..
T Consensus 8 kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 433
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.89 E-value=0.14 Score=64.92 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=53.3
Q ss_pred CCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCcc--c-----hHHHhhc--ceEeeccCCCHHHHHHHHHH
Q 036742 460 SNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVD--I-----IESVKTH--CKVIKVDPPVTHEIMEVLIQ 530 (629)
Q Consensus 460 ~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~--I-----~~aLrSR--~~~I~F~ppt~eei~~iL~~ 530 (629)
.+.||||||+-.+.......|++.++. .++++||+...... + ...+..+ +..+.+. +|+.
T Consensus 930 ~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~~QL~sV~aG~~F~~lq~~~~~~ta~L~--------eI~R- 998 (1623)
T PRK14712 930 SNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVVIMK--------EIVR- 998 (1623)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcchhhcCCCCCCHHHHHHHHcCCCCeEEeC--------eeec-
Confidence 345999999999988877777777763 46889998864322 1 1111111 1111111 1111
Q ss_pred HHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742 531 IARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564 (629)
Q Consensus 531 i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~ 564 (629)
. .++....+.....|++..+|..|+.
T Consensus 999 -------Q-~~elr~AV~~~~~g~~~~AL~~L~~ 1024 (1623)
T PRK14712 999 -------Q-TPELREAVYSLINRDVERALSGLER 1024 (1623)
T ss_pred -------C-CHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 1 3556677777788999999999874
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.89 E-value=0.012 Score=57.78 Aligned_cols=39 Identities=41% Similarity=0.388 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++..+.|...++.|. .++|.||+|+||||++++++..+.
T Consensus 12 ~~~~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 12 PLQAAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhcC
Confidence 556677887777765 699999999999999999998763
No 435
>PLN02674 adenylate kinase
Probab=95.89 E-value=0.29 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|+|.||||+||+|+|+.||..+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999985
No 436
>PRK14531 adenylate kinase; Provisional
Probab=95.88 E-value=0.0066 Score=59.41 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|+||||+||||+++.||..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 437
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.87 E-value=0.0067 Score=58.81 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|+||+||||+|+.++..+.
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999999863
No 438
>PLN02840 tRNA dimethylallyltransferase
Probab=95.86 E-value=0.15 Score=56.60 Aligned_cols=25 Identities=40% Similarity=0.713 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
.|+|.||+|+|||++|..||+.+.+
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Confidence 5889999999999999999999743
No 439
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.86 E-value=0.063 Score=60.15 Aligned_cols=25 Identities=48% Similarity=0.592 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
...++|+|++|+||||+|..+|..+
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999999986
No 440
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0064 Score=58.10 Aligned_cols=28 Identities=39% Similarity=0.646 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 378 NCPHILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 378 ~~p~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
..|+||++|-|||||||++..||... +.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-~~ 33 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT-GL 33 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh-CC
Confidence 35799999999999999999999664 44
No 441
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.85 E-value=0.086 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|.|++|+|||++++.+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998754
No 442
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.84 E-value=0.071 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+++..+...
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999998864
No 443
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.84 E-value=0.068 Score=51.68 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57899999999999999999875
No 444
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.80 E-value=0.087 Score=48.64 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
|+|.|++|+|||+++.++...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 445
>PRK02496 adk adenylate kinase; Provisional
Probab=95.79 E-value=0.0074 Score=58.77 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||||+||||+|+.||+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 446
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.79 E-value=0.0071 Score=58.88 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|.||||+||||+|+.||..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999985
No 447
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.79 E-value=0.075 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
..++.||.|+|||+++++++-.+.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999876653
No 448
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.78 E-value=0.05 Score=53.41 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAk 401 (629)
++|+||.|.|||++++.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999984
No 449
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.78 E-value=0.016 Score=62.61 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=39.4
Q ss_pred CC-cccccHHHHHHHHHHHHc----C--CCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 357 LN-GFICHRHEAQLLKELVVD----G--NCPHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 357 fd-dIiG~e~~~~~Lk~~L~~----g--~~p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
|+ ++.|.++.+..|-..++. . .-+.++|.||+|+|||++++.|-+.+..
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 44 899999999888888862 1 1236889999999999999999988743
No 450
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.77 E-value=0.093 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|+|.|.+|+|||+|+..++.
T Consensus 15 Ki~vvG~~gvGKTsli~~~~~ 35 (219)
T PLN03071 15 KLVIVGDGGTGKTTFVKRHLT 35 (219)
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 589999999999999998764
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.76 E-value=0.049 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|+||.|+||||+.+.|+.-
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 5899999999999999999943
No 452
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.76 E-value=0.34 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 378 NCPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 378 ~~p~ILL~GPPGtGKTtLAraLAke 402 (629)
..+.++|.|++|+|||++++++...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999875
No 453
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.76 E-value=0.24 Score=59.91 Aligned_cols=108 Identities=17% Similarity=0.080 Sum_probs=73.5
Q ss_pred CeEEEEEccchhhHHHHHHHHHHHhccC----CCcEEEEEecCCccchHHHhhc--ceEeeccCCCHHHHHHHHHHHHHh
Q 036742 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYT----DSCKLILCCEDDVDIIESVKTH--CKVIKVDPPVTHEIMEVLIQIARK 534 (629)
Q Consensus 461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~----~~~~~ILitN~~~~I~~aLrSR--~~~I~F~ppt~eei~~iL~~i~~k 534 (629)
+-|||+|+++-+.......|..+|.... ....+.++.+....+....++. ...|.+.|++..+....+...+..
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 3499999999998888888888877543 0011222222222233333333 357999999999999999887754
Q ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742 535 EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569 (629)
Q Consensus 535 egl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~ 569 (629)
. .....+.+..|.+.+.|+.=-+...++.+...+
T Consensus 235 ~-~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~ 268 (849)
T COG3899 235 T-KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEG 268 (849)
T ss_pred c-ccccchHHHHHHHHhcCCCccHHHHHHHHHhCC
Confidence 2 345677899999999998877777777766543
No 454
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.73 E-value=0.079 Score=49.91 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.+++.|++|+|||+|++.+..
T Consensus 5 kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 588999999999999998754
No 455
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.67 E-value=0.071 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|++.|++|+|||++++.+...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~ 23 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQG 23 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 456
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.67 E-value=0.079 Score=56.90 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
+++.+|+|+|||+++...+-..
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~ 23 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHS 23 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999988776543
No 457
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.66 E-value=0.081 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|.+|+|||+|+..+...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999888754
No 458
>PRK13949 shikimate kinase; Provisional
Probab=95.66 E-value=0.0096 Score=57.86 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.||||+||||+++.+|+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999997
No 459
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.013 Score=56.69 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++++..+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 460
>PRK08233 hypothetical protein; Provisional
Probab=95.65 E-value=0.0081 Score=57.78 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
-|.|.|+||+||||+|..|+..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999986
No 461
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=95.65 E-value=0.066 Score=53.32 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAke 402 (629)
|.|+|.||+|+|||+|...+...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 46999999999999999988754
No 462
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.65 E-value=0.093 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.+++.|++|+|||+++..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 463
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.63 E-value=0.0097 Score=57.54 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||+|++++..+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999984
No 464
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.62 E-value=0.18 Score=47.04 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
|++.|++|+|||++++.+...
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999988864
No 465
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.60 E-value=0.055 Score=55.08 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.++|.||.|+|||++.+.++.
T Consensus 33 ~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 466
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.59 E-value=0.085 Score=52.15 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=56.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVS 460 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~ 460 (629)
-|+++|++|+||||++..+....+...........-...........+.+...+..+. +.++.+...+.... .
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-----~~~~~~~~~y~~~~--~ 79 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-----EEYRSLRPEYYRGA--N 79 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH-----HHHHHHHHHHhcCC--C
Confidence 4899999999999999999987655332110000000000000000111222233332 33444444433221 2
Q ss_pred CeEEEEEccc-hhhHHHHHHHHHHH-hccCCCcEEEEEecCCccch
Q 036742 461 NAMIVIYEVD-KAAEHIQYLIKWIM-DGYTDSCKLILCCEDDVDII 504 (629)
Q Consensus 461 ~kVIIIDEID-~Ls~~~q~aLlril-Ee~~~~~~~ILitN~~~~I~ 504 (629)
..+++.|..+ .-..+....+...+ +......++|++.|..+...
T Consensus 80 ~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 80 GILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred EEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 2366666655 23333333333333 33335688999988766543
No 467
>PRK14709 hypothetical protein; Provisional
Probab=95.59 E-value=0.14 Score=57.90 Aligned_cols=134 Identities=11% Similarity=0.158 Sum_probs=74.2
Q ss_pred Cccc-ccHHHHHHHHHHHH---cCCCC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEE
Q 036742 358 NGFI-CHRHEAQLLKELVV---DGNCP---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVEL 430 (629)
Q Consensus 358 ddIi-G~e~~~~~Lk~~L~---~g~~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleI 430 (629)
+++. |.++.+..|++++- .|... .++|+|+-|.||++++..|...+ |... ..+
T Consensus 177 ~~~~~gD~e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~ll-G~~~-------------------~~~ 236 (469)
T PRK14709 177 DEATGGDDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGIL-GDYA-------------------TTA 236 (469)
T ss_pred HHHhCCCHHHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHH-hhhc-------------------ccC
Confidence 5543 56778888888774 33332 47789999999999999888776 4321 000
Q ss_pred ecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHh--------------ccCCCcEEEEE
Q 036742 431 NVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMD--------------GYTDSCKLILC 496 (629)
Q Consensus 431 nas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilE--------------e~~~~~~~ILi 496 (629)
+. ..+....... ..+.+..-....+++.+|++.=..-....|..+.- .+...+.++++
T Consensus 237 ~~------~~~~~~~~~~--~~~~lA~L~Gkrlv~~~E~~~g~~~~~~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl~~~ 308 (469)
T PRK14709 237 AM------DTFTASKHDR--HPTDLAMLRGARLVTASETEEGRAWAEARIKQMTGGDTITARFMRQDFFEFVPQFKLTIV 308 (469)
T ss_pred CH------HHHhhccccC--CchhhHhhcCCeEEEeecCCcccccCHHHHHhhhCCCcEEeecccCCceEEEeeeEEEEE
Confidence 00 0000000000 00001111123478888886421111122333221 12245678899
Q ss_pred ecCCccc---hHHHhhcceEeeccCC
Q 036742 497 CEDDVDI---IESVKTHCKVIKVDPP 519 (629)
Q Consensus 497 tN~~~~I---~~aLrSR~~~I~F~pp 519 (629)
||....+ +.++.+|+.+|.|...
T Consensus 309 ~N~~P~~~d~d~g~~RR~~iIPF~~~ 334 (469)
T PRK14709 309 GNHKPRLRNVDEAARRRFNIVPFTRK 334 (469)
T ss_pred cCCCCccCCCCceeEeeEEEEecCCC
Confidence 9998775 6789999999999754
No 468
>PRK14529 adenylate kinase; Provisional
Probab=95.58 E-value=0.11 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.||||+||||+++.||+.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 488999999999999999999863
No 469
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.58 E-value=0.069 Score=52.09 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+|+.|+||+|||++|..++..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 48999999999999999999875
No 470
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.58 E-value=0.084 Score=51.74 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=33.7
Q ss_pred CCeEEEEEccch-hhHHHHHHHHHHHhccC-CCcEEEEEecCCccchHHHhhcceEeec
Q 036742 460 SNAMIVIYEVDK-AAEHIQYLIKWIMDGYT-DSCKLILCCEDDVDIIESVKTHCKVIKV 516 (629)
Q Consensus 460 ~~kVIIIDEID~-Ls~~~q~aLlrilEe~~-~~~~~ILitN~~~~I~~aLrSR~~~I~F 516 (629)
...++++||.+. +.......+...+.+.. ....+|+++++...+ ..-.|+..++.
T Consensus 116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~--~~adrvi~i~~ 172 (178)
T cd03239 116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF--ENADKLIGVLF 172 (178)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--hhCCeEEEEEE
Confidence 346999999986 45555555555554332 236788888875433 24556655554
No 471
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.58 E-value=0.019 Score=61.63 Aligned_cols=37 Identities=35% Similarity=0.557 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 365 ~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+..+.|..++..+. ++||+|++|+||||++++++.++
T Consensus 132 ~~~~~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 132 AQASVIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 44567888887653 79999999999999999999986
No 472
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.56 E-value=0.022 Score=54.08 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHcC-CCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 363 HRHEAQLLKELVVDG-NCPHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g-~~p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
|.+++..+.+.+... ..+++||.+|+|+|||.++-.++.++..
T Consensus 8 Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 8 QQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 567778888888776 5678999999999999999987777644
No 473
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.55 E-value=0.086 Score=52.59 Aligned_cols=56 Identities=7% Similarity=0.261 Sum_probs=36.0
Q ss_pred CeEEEEEccc-hhhHHHHHHHHHHHhccCC-CcEEEEEecCCccchHHHhhcceEeecc
Q 036742 461 NAMIVIYEVD-KAAEHIQYLIKWIMDGYTD-SCKLILCCEDDVDIIESVKTHCKVIKVD 517 (629)
Q Consensus 461 ~kVIIIDEID-~Ls~~~q~aLlrilEe~~~-~~~~ILitN~~~~I~~aLrSR~~~I~F~ 517 (629)
+.||+-||-- ++.++...-+.+++++... .+-++++|+ ...|....+.|+..+.-.
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATH-d~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH-DLELVNRMRHRVLALEDG 213 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEec-cHHHHHhccCcEEEEeCC
Confidence 3499999974 4666666666677766554 344555555 445666777787765543
No 474
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.55 E-value=0.11 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
-+.|+||||||||+++..++...
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHe
Confidence 47899999999999999998653
No 475
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.55 E-value=0.065 Score=53.15 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALL 400 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLA 400 (629)
.++|.||.|+||||+.+.|+
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 48999999999999999988
No 476
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.55 E-value=0.24 Score=52.75 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
+.|+|.||.|+|||.||..||+. .+
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~ 29 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KA 29 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CC
Confidence 35889999999999999999998 44
No 477
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.54 E-value=0.01 Score=57.46 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||+|+||||++++|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998863
No 478
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.53 E-value=0.061 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+-|.|.+||||||++++|++.+
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCc
Confidence 46799999999999999999875
No 479
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.53 E-value=0.12 Score=52.76 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=30.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh-CCCCCCCCCCccccccccCCcceEEEecccc
Q 036742 382 ILIKGQSGSGKRALAMALLHEIY-GDACWNEKWPTQVLVPVASSAHHVELNVNLQ 435 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL~-g~~~~~~~~~~~v~~~i~sS~~vleInas~~ 435 (629)
.+|.||||+|||+++..+|-.+. |..+... .........+++++..+.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~------~~~~~~~~~Vlyi~~Ed~ 52 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGG------GLKVTEPGRVVYLSAEDP 52 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCC------ccccCCCceEEEEECCCC
Confidence 57999999999999999987653 2221000 011223556788877543
No 480
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.0094 Score=57.71 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742 382 ILIKGQSGSGKRALAMALLHEIYGDA 407 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL~g~~ 407 (629)
|-+.|||||||||+|+.||..+ |..
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~-gl~ 27 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL-GLK 27 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh-CCc
Confidence 5689999999999999999996 554
No 481
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.52 E-value=0.16 Score=47.40 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
+++.|++|+|||+++.++...
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998754
No 482
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=95.48 E-value=0.19 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
|+|.|.+|+|||+|+..++..
T Consensus 4 IvvvGd~~vGKTsLi~~~~~~ 24 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKD 24 (222)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998864
No 483
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.47 E-value=0.091 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|++.|++|+|||+|+..++.
T Consensus 4 ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999875
No 484
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.47 E-value=0.31 Score=47.51 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.6
Q ss_pred EcCCCCcHHHHHHHHHHHHhC
Q 036742 385 KGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 385 ~GPPGtGKTtLAraLAkeL~g 405 (629)
.+.+||||||++.+|++. ++
T Consensus 5 IAtiGCGKTTva~aL~~L-Fg 24 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNL-FG 24 (168)
T ss_pred ecCCCcCHHHHHHHHHHH-cC
Confidence 478999999999999986 46
No 485
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.46 E-value=0.022 Score=61.14 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 365 ~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
...+.|..++..+ .++++.|++|+||||++++++.++
T Consensus 136 ~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 136 AQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhh
Confidence 3456677777754 479999999999999999999875
No 486
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.43 E-value=0.28 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
+|+|.|.||+|||+++.+|+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 5899999999999999999864
No 487
>PRK04040 adenylate kinase; Provisional
Probab=95.42 E-value=0.012 Score=58.29 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+|+|||||||+++.++..+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999987
No 488
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.19 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||.|+||||++..+|..+.
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998763
No 489
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.39 E-value=0.11 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.+++.|++|+|||+++..+..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478999999999999987764
No 490
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.013 Score=57.67 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.||||+||||+|+.||+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999984
No 491
>PRK06217 hypothetical protein; Validated
Probab=95.35 E-value=0.012 Score=57.43 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|++|+||||+|++|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999986
No 492
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.14 Score=57.01 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||++..+|..+
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999764
No 493
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.34 E-value=0.013 Score=56.03 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAke 402 (629)
|.|+|++|||||||+++|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 494
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.29 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+||||++..||..+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999764
No 495
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.34 E-value=0.013 Score=58.74 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|+||||+||||+|+.||..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 496
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.34 E-value=0.051 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 497
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.33 E-value=0.02 Score=62.02 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+..+.|..+++.+. +||+.||+|+||||++++++..+
T Consensus 149 ~~~~~~l~~~v~~~~--nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 149 GDLEAFLHACVVGRL--TMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHHHHHcCC--eEEEECCCCccHHHHHHHHHccc
Confidence 444566667776544 79999999999999999999876
No 498
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.31 E-value=0.15 Score=62.95 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=43.7
Q ss_pred EEEEEccchhh----HHHHHHHHHHHhcc-CCCcEEEEEecCCcc--chHHHhhcc-eEeeccCCCHHHHHHHHHH
Q 036742 463 MIVIYEVDKAA----EHIQYLIKWIMDGY-TDSCKLILCCEDDVD--IIESVKTHC-KVIKVDPPVTHEIMEVLIQ 530 (629)
Q Consensus 463 VIIIDEID~Ls----~~~q~aLlrilEe~-~~~~~~ILitN~~~~--I~~aLrSR~-~~I~F~ppt~eei~~iL~~ 530 (629)
||||||+..|. .+....|.++.... .-++.+|++|.++.. |...|+.-+ ..|-|.--+..+.+.||-.
T Consensus 1143 VVIIDE~AdLm~~~~kevE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrtILd~ 1218 (1355)
T PRK10263 1143 VVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 1218 (1355)
T ss_pred EEEEcChHHHHhhhhHHHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHHhcCC
Confidence 99999997663 34445566665533 356778999998863 555566655 3566665566666666643
No 499
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.31 E-value=0.27 Score=54.20 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcC----CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 364 RHEAQLLKELVVDG----NCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 364 e~~~~~Lk~~L~~g----~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++...+..|+... +...+.|.||.|+||||+.--+|...
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 33444444444333 23468899999999998554455443
No 500
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.30 E-value=0.013 Score=58.55 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|.||||+||||+|+.||..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999875
Done!