Query 036742
Match_columns 629
No_of_seqs 359 out of 2306
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_E Activator 1 40 kDa subu 100.0 2.4E-32 8.2E-37 287.4 26.5 282 346-627 2-304 (354)
2 1sxj_C Activator 1 40 kDa subu 100.0 1.9E-29 6.4E-34 265.9 27.3 262 345-627 12-282 (340)
3 1iqp_A RFCS; clamp loader, ext 100.0 3.8E-28 1.3E-32 251.0 26.9 258 344-627 11-277 (327)
4 2chq_A Replication factor C sm 100.0 5E-28 1.7E-32 249.2 23.9 257 345-627 4-269 (319)
5 3u61_B DNA polymerase accessor 100.0 1.7E-28 5.7E-33 255.9 20.3 199 344-566 12-220 (324)
6 1sxj_D Activator 1 41 kDa subu 100.0 9.5E-28 3.3E-32 251.3 24.1 264 345-627 24-305 (353)
7 1sxj_B Activator 1 37 kDa subu 100.0 3.4E-27 1.1E-31 243.4 26.0 254 345-626 8-270 (323)
8 1jr3_A DNA polymerase III subu 99.9 3.1E-25 1E-29 233.9 29.4 269 345-626 3-285 (373)
9 2chg_A Replication factor C sm 99.9 2.6E-25 8.9E-30 214.6 26.4 208 345-569 4-211 (226)
10 3pvs_A Replication-associated 99.9 2.2E-25 7.6E-30 244.8 22.8 253 345-628 13-297 (447)
11 1njg_A DNA polymerase III subu 99.9 1.4E-23 4.7E-28 204.4 26.1 219 345-568 10-234 (250)
12 1sxj_A Activator 1 95 kDa subu 99.9 2.9E-24 9.8E-29 239.6 19.5 205 343-570 24-260 (516)
13 3pfi_A Holliday junction ATP-d 99.9 2.8E-22 9.7E-27 209.8 24.6 192 345-566 16-231 (338)
14 3uk6_A RUVB-like 2; hexameric 99.9 3.7E-22 1.3E-26 210.8 22.8 221 348-587 33-328 (368)
15 1a5t_A Delta prime, HOLB; zinc 99.9 3.1E-22 1.1E-26 211.1 20.4 193 362-564 6-207 (334)
16 1hqc_A RUVB; extended AAA-ATPa 99.9 4.4E-21 1.5E-25 198.8 23.1 194 347-569 1-218 (324)
17 2gno_A DNA polymerase III, gam 99.9 2.1E-21 7.2E-26 203.2 20.0 173 362-564 1-175 (305)
18 2c9o_A RUVB-like 1; hexameric 99.9 4.4E-21 1.5E-25 210.7 22.3 123 462-585 297-433 (456)
19 3vfd_A Spastin; ATPase, microt 99.9 4.5E-21 1.5E-25 206.0 20.4 199 343-564 100-327 (389)
20 4b4t_J 26S protease regulatory 99.8 2.6E-20 8.9E-25 201.1 20.4 213 350-592 140-392 (405)
21 3eie_A Vacuolar protein sortin 99.8 6.4E-20 2.2E-24 192.2 19.3 182 346-553 6-218 (322)
22 1in4_A RUVB, holliday junction 99.8 2.5E-19 8.6E-24 188.8 23.7 194 343-566 10-227 (334)
23 2qp9_X Vacuolar protein sortin 99.8 5.4E-20 1.8E-24 195.9 18.3 188 343-553 36-251 (355)
24 3b9p_A CG5977-PA, isoform A; A 99.8 6.6E-20 2.3E-24 188.4 18.3 191 346-562 9-232 (297)
25 3bos_A Putative DNA replicatio 99.8 1.7E-19 5.7E-24 177.3 19.7 194 346-568 15-223 (242)
26 4b4t_I 26S protease regulatory 99.8 8E-20 2.7E-24 198.2 18.7 213 350-593 174-427 (437)
27 3syl_A Protein CBBX; photosynt 99.8 1.4E-19 4.9E-24 186.5 18.7 191 358-567 31-260 (309)
28 3d8b_A Fidgetin-like protein 1 99.8 3.1E-19 1.1E-23 189.9 21.2 191 348-561 74-293 (357)
29 2qby_B CDC6 homolog 3, cell di 99.8 5.8E-19 2E-23 186.6 22.9 229 345-589 10-270 (384)
30 1xwi_A SKD1 protein; VPS4B, AA 99.8 2.3E-19 7.7E-24 188.6 18.5 182 350-556 4-216 (322)
31 4b4t_H 26S protease regulatory 99.8 2.3E-19 7.9E-24 196.3 19.0 213 350-592 201-453 (467)
32 4b4t_L 26S protease subunit RP 99.8 2.3E-19 7.9E-24 196.0 18.9 210 352-591 175-424 (437)
33 4b4t_M 26S protease regulatory 99.8 1.1E-19 3.6E-24 198.5 15.4 183 350-560 173-396 (434)
34 2v1u_A Cell division control p 99.8 1.1E-18 3.6E-23 183.7 22.0 227 347-589 11-276 (387)
35 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.4E-18 4.8E-23 174.4 21.8 216 354-592 2-252 (262)
36 3h4m_A Proteasome-activating n 99.8 6E-19 2.1E-23 180.0 18.8 219 350-592 9-261 (285)
37 1fnn_A CDC6P, cell division co 99.8 1.8E-18 6.1E-23 182.7 22.6 202 345-567 7-252 (389)
38 4b4t_K 26S protease regulatory 99.8 7.5E-19 2.6E-23 191.6 19.7 183 351-560 165-388 (428)
39 2zan_A Vacuolar protein sortin 99.8 3.9E-19 1.3E-23 194.8 17.0 188 344-553 120-335 (444)
40 1lv7_A FTSH; alpha/beta domain 99.8 4.6E-19 1.6E-23 178.8 15.5 217 347-588 1-251 (257)
41 2z4s_A Chromosomal replication 99.8 5.1E-19 1.7E-23 193.7 16.5 239 356-616 103-361 (440)
42 3te6_A Regulatory protein SIR3 99.8 3.2E-18 1.1E-22 180.0 19.9 197 360-568 22-285 (318)
43 1ofh_A ATP-dependent HSL prote 99.8 1.9E-18 6.3E-23 177.2 16.2 189 358-566 15-270 (310)
44 2r44_A Uncharacterized protein 99.8 8.6E-18 3E-22 175.6 21.0 219 346-590 15-298 (331)
45 3pxg_A Negative regulator of g 99.8 2.9E-18 1E-22 189.0 15.7 203 343-567 165-383 (468)
46 1l8q_A Chromosomal replication 99.8 3.7E-17 1.3E-21 170.5 22.7 188 355-568 8-214 (324)
47 2qby_A CDC6 homolog 1, cell di 99.7 7.4E-17 2.5E-21 169.3 20.9 204 346-568 11-251 (386)
48 3cf0_A Transitional endoplasmi 99.7 2.6E-17 8.8E-22 170.9 16.1 180 350-553 7-219 (301)
49 1g8p_A Magnesium-chelatase 38 99.7 4.6E-17 1.6E-21 170.2 18.0 239 350-590 16-323 (350)
50 1jbk_A CLPB protein; beta barr 99.7 2.1E-17 7E-22 155.5 13.7 170 345-528 9-194 (195)
51 2ce7_A Cell division protein F 99.7 8.8E-17 3E-21 177.7 18.1 215 348-590 5-257 (476)
52 4fcw_A Chaperone protein CLPB; 99.7 4.9E-17 1.7E-21 167.4 14.9 188 358-566 17-275 (311)
53 1jr3_D DNA polymerase III, del 99.7 1.2E-16 4.3E-21 168.0 15.3 176 370-568 9-191 (343)
54 3pxi_A Negative regulator of g 99.7 9.6E-17 3.3E-21 186.5 15.0 203 343-567 165-383 (758)
55 1qvr_A CLPB protein; coiled co 99.7 9.5E-17 3.3E-21 189.0 14.2 209 345-567 157-390 (854)
56 1um8_A ATP-dependent CLP prote 99.7 5.5E-16 1.9E-20 165.2 17.5 190 358-567 21-337 (376)
57 2p65_A Hypothetical protein PF 99.7 1.7E-16 5.7E-21 149.4 11.9 163 344-520 8-187 (187)
58 3hu3_A Transitional endoplasmi 99.7 1.7E-16 5.7E-21 176.1 12.9 188 351-562 197-414 (489)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 1.6E-16 5.5E-21 184.3 12.2 206 343-566 171-406 (758)
60 1d2n_A N-ethylmaleimide-sensit 99.7 6.5E-16 2.2E-20 157.1 15.2 182 358-567 33-247 (272)
61 2bjv_A PSP operon transcriptio 99.7 1.5E-15 5.1E-20 153.7 17.8 194 356-568 4-239 (265)
62 3m6a_A ATP-dependent protease 99.7 5.4E-16 1.9E-20 174.1 14.9 187 358-565 81-311 (543)
63 3cf2_A TER ATPase, transitiona 99.7 1.8E-16 6.2E-21 184.4 10.8 175 353-554 199-406 (806)
64 2dhr_A FTSH; AAA+ protein, hex 99.6 1.7E-15 5.8E-20 168.3 18.0 219 346-589 20-271 (499)
65 1ixz_A ATP-dependent metallopr 99.6 3.1E-15 1.1E-19 150.4 17.9 193 350-567 8-234 (254)
66 2r62_A Cell division protease 99.6 4.9E-18 1.7E-22 171.9 -4.5 198 350-570 3-234 (268)
67 1iy2_A ATP-dependent metallopr 99.6 1.5E-14 5.3E-19 147.7 18.4 190 353-567 35-258 (278)
68 1r6b_X CLPA protein; AAA+, N-t 99.6 1.1E-14 3.6E-19 169.1 19.1 183 358-566 458-712 (758)
69 3pxi_A Negative regulator of g 99.6 4.8E-15 1.7E-19 172.2 16.2 184 358-564 491-719 (758)
70 3hws_A ATP-dependent CLP prote 99.6 5E-15 1.7E-19 157.2 13.8 190 358-567 15-320 (363)
71 3cf2_A TER ATPase, transitiona 99.6 4.5E-16 1.5E-20 181.1 5.5 183 353-562 472-694 (806)
72 1ojl_A Transcriptional regulat 99.6 5.2E-14 1.8E-18 146.7 16.5 193 358-569 2-235 (304)
73 1w5s_A Origin recognition comp 99.5 1.2E-13 4E-18 147.0 19.4 201 350-566 17-270 (412)
74 3k1j_A LON protease, ATP-depen 99.5 6E-14 2E-18 159.3 17.0 211 348-567 31-353 (604)
75 3t15_A Ribulose bisphosphate c 99.5 2E-13 6.9E-18 141.3 19.3 153 380-555 37-220 (293)
76 1qvr_A CLPB protein; coiled co 99.5 3.2E-14 1.1E-18 167.6 13.4 189 358-566 558-816 (854)
77 2x8a_A Nuclear valosin-contain 99.5 2.7E-13 9.2E-18 139.3 15.5 175 353-550 5-211 (274)
78 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 4.8E-13 1.6E-17 148.7 18.5 203 358-581 22-278 (500)
79 1g41_A Heat shock protein HSLU 99.4 1.2E-12 3.9E-17 143.4 16.1 104 462-565 252-403 (444)
80 1ypw_A Transitional endoplasmi 99.4 7.6E-13 2.6E-17 155.0 10.8 186 351-560 197-412 (806)
81 3f9v_A Minichromosome maintena 99.3 3.1E-13 1.1E-17 153.3 5.1 159 358-533 295-491 (595)
82 3n70_A Transport activator; si 99.3 5.1E-12 1.7E-16 117.0 11.7 132 359-519 2-144 (145)
83 3ec2_A DNA replication protein 99.3 1.4E-11 4.7E-16 117.4 13.5 128 349-502 1-145 (180)
84 1ypw_A Transitional endoplasmi 99.3 1.7E-14 5.9E-19 168.9 -9.3 158 351-535 470-664 (806)
85 3co5_A Putative two-component 99.3 3.9E-12 1.3E-16 117.6 7.0 128 359-519 5-142 (143)
86 2qen_A Walker-type ATPase; unk 99.3 2.3E-10 7.8E-15 118.3 20.0 183 354-564 8-248 (350)
87 2fna_A Conserved hypothetical 99.1 1.5E-09 5.2E-14 112.2 19.7 183 355-565 10-253 (357)
88 1u0j_A DNA replication protein 99.1 3.1E-10 1.1E-14 116.3 12.2 137 366-541 89-259 (267)
89 2w58_A DNAI, primosome compone 99.0 4E-10 1.4E-14 108.8 9.5 131 348-500 15-159 (202)
90 3dzd_A Transcriptional regulat 99.0 2.5E-09 8.5E-14 114.3 14.6 192 358-568 129-360 (368)
91 1tue_A Replication protein E1; 99.0 4.2E-09 1.4E-13 104.1 12.7 118 364-519 42-179 (212)
92 1ny5_A Transcriptional regulat 98.9 1.1E-08 3.8E-13 109.9 15.9 194 357-569 136-370 (387)
93 2qgz_A Helicase loader, putati 98.9 3.6E-09 1.2E-13 110.4 10.2 55 350-404 116-177 (308)
94 2kjq_A DNAA-related protein; s 98.9 2.9E-09 1E-13 99.5 7.8 119 356-512 15-140 (149)
95 4akg_A Glutathione S-transfera 98.8 3E-08 1E-12 127.8 16.9 144 369-534 1259-1433(2695)
96 3upu_A ATP-dependent DNA helic 98.7 7.7E-08 2.6E-12 105.4 14.0 136 344-501 10-166 (459)
97 3f8t_A Predicted ATPase involv 98.7 4.1E-07 1.4E-11 99.9 18.0 204 360-588 215-482 (506)
98 1z6t_A APAF-1, apoptotic prote 98.5 8.7E-06 3E-10 91.0 22.2 181 353-561 119-327 (591)
99 4akg_A Glutathione S-transfera 98.3 1.9E-05 6.6E-10 102.1 23.3 147 365-545 633-803 (2695)
100 3sfz_A APAF-1, apoptotic pepti 98.3 2.3E-05 7.8E-10 94.0 21.8 183 353-562 119-327 (1249)
101 2a5y_B CED-4; apoptosis; HET: 98.3 7.5E-06 2.6E-10 91.5 14.5 170 361-555 131-330 (549)
102 3vkg_A Dynein heavy chain, cyt 98.2 1.9E-06 6.6E-11 112.1 10.5 143 369-533 1296-1470(3245)
103 1ye8_A Protein THEP1, hypothet 98.1 1.2E-05 4.1E-10 77.1 10.1 67 461-529 100-173 (178)
104 2r2a_A Uncharacterized protein 97.9 5.3E-06 1.8E-10 81.3 3.7 60 459-518 86-152 (199)
105 3vkg_A Dynein heavy chain, cyt 97.8 0.00036 1.2E-08 91.3 19.6 135 364-529 591-750 (3245)
106 2orw_A Thymidine kinase; TMTK, 97.8 1.1E-05 3.7E-10 77.8 3.3 49 461-512 77-131 (184)
107 1vt4_I APAF-1 related killer D 97.7 0.00034 1.2E-08 83.5 15.9 41 361-401 131-172 (1221)
108 2vhj_A Ntpase P4, P4; non- hyd 97.6 0.00012 4E-09 77.0 8.3 22 381-402 125-146 (331)
109 3e1s_A Exodeoxyribonuclease V, 97.4 0.00063 2.2E-08 76.7 12.0 114 363-501 191-317 (574)
110 2fz4_A DNA repair protein RAD2 97.3 0.0018 6E-08 64.4 11.9 38 363-403 95-132 (237)
111 2b8t_A Thymidine kinase; deoxy 97.2 0.0014 4.8E-08 65.2 10.2 35 461-498 90-124 (223)
112 1w36_D RECD, exodeoxyribonucle 97.2 0.0019 6.4E-08 73.3 12.2 25 380-404 165-189 (608)
113 3cmu_A Protein RECA, recombina 97.1 0.00058 2E-08 86.2 8.0 24 381-404 1429-1452(2050)
114 3cmw_A Protein RECA, recombina 97.1 0.00027 9.3E-09 88.1 5.1 22 382-403 1085-1106(1706)
115 2ehv_A Hypothetical protein PH 97.0 0.0034 1.2E-07 61.3 10.8 21 381-401 32-52 (251)
116 1t6n_A Probable ATP-dependent 97.0 0.032 1.1E-06 53.7 17.5 41 462-502 160-202 (220)
117 2r8r_A Sensor protein; KDPD, P 97.0 0.0018 6.3E-08 64.6 8.7 69 461-529 85-174 (228)
118 1w4r_A Thymidine kinase; type 96.9 0.0019 6.4E-08 63.1 7.4 94 381-497 22-124 (195)
119 1g5t_A COB(I)alamin adenosyltr 96.9 0.0051 1.8E-07 60.1 10.5 28 380-407 29-56 (196)
120 3lw7_A Adenylate kinase relate 96.8 0.0056 1.9E-07 55.8 10.4 22 381-403 3-24 (179)
121 4a74_A DNA repair and recombin 96.8 0.005 1.7E-07 59.3 10.4 23 381-403 27-49 (231)
122 2cvh_A DNA repair and recombin 96.8 0.0062 2.1E-07 58.3 10.8 21 381-401 22-42 (220)
123 2ze6_A Isopentenyl transferase 96.8 0.0086 2.9E-07 60.1 12.2 23 381-403 3-25 (253)
124 3pey_A ATP-dependent RNA helic 96.8 0.03 1E-06 57.9 16.7 40 462-501 147-188 (395)
125 2gxq_A Heat resistant RNA depe 96.8 0.025 8.6E-07 53.6 14.8 40 462-501 146-186 (207)
126 1vec_A ATP-dependent RNA helic 96.8 0.028 9.5E-07 53.3 14.8 39 462-500 148-187 (206)
127 3fb4_A Adenylate kinase; psych 96.8 0.015 5E-07 56.0 13.0 23 381-403 2-24 (216)
128 1svm_A Large T antigen; AAA+ f 96.7 0.0011 3.7E-08 71.0 5.3 25 381-405 171-195 (377)
129 3fmo_B ATP-dependent RNA helic 96.7 0.048 1.6E-06 55.9 17.3 40 462-501 237-278 (300)
130 3jvv_A Twitching mobility prot 96.7 0.0098 3.4E-07 63.1 12.4 46 354-404 103-148 (356)
131 3llm_A ATP-dependent RNA helic 96.7 0.022 7.5E-07 55.9 14.2 21 381-401 78-98 (235)
132 3dl0_A Adenylate kinase; phosp 96.7 0.022 7.6E-07 54.8 13.9 23 381-403 2-24 (216)
133 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.015 5.2E-07 58.3 13.0 26 379-404 4-29 (260)
134 3sr0_A Adenylate kinase; phosp 96.6 0.013 4.6E-07 57.2 11.9 22 382-403 3-24 (206)
135 2iut_A DNA translocase FTSK; n 96.6 0.02 6.8E-07 64.4 14.5 68 462-529 345-420 (574)
136 3crm_A TRNA delta(2)-isopenten 96.6 0.00059 2E-08 71.7 2.0 23 381-403 7-29 (323)
137 1n0w_A DNA repair protein RAD5 96.6 0.0056 1.9E-07 59.6 8.8 23 381-403 26-48 (243)
138 3trf_A Shikimate kinase, SK; a 96.6 0.0013 4.5E-08 61.8 4.0 25 379-403 5-29 (185)
139 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0015 5E-08 69.5 4.7 39 366-404 11-49 (359)
140 2ius_A DNA translocase FTSK; n 96.6 0.018 6E-07 64.1 13.5 68 463-530 300-375 (512)
141 1qde_A EIF4A, translation init 96.5 0.029 9.9E-07 54.0 13.5 39 462-500 157-196 (224)
142 3exa_A TRNA delta(2)-isopenten 96.5 0.0092 3.1E-07 62.5 10.1 24 380-403 4-27 (322)
143 1qhx_A CPT, protein (chloramph 96.5 0.0013 4.3E-08 61.4 3.2 23 381-403 5-27 (178)
144 3kb2_A SPBC2 prophage-derived 96.5 0.0017 5.7E-08 59.8 3.9 23 381-403 3-25 (173)
145 2z0h_A DTMP kinase, thymidylat 96.5 0.045 1.6E-06 51.3 14.0 23 382-404 3-25 (197)
146 1q0u_A Bstdead; DEAD protein, 96.4 0.051 1.8E-06 52.3 14.3 39 462-500 152-191 (219)
147 1nrj_B SR-beta, signal recogni 96.4 0.021 7.3E-07 54.5 11.5 27 377-403 10-36 (218)
148 2j9r_A Thymidine kinase; TK1, 96.4 0.0063 2.1E-07 60.2 7.7 97 382-499 31-137 (214)
149 2pl3_A Probable ATP-dependent 96.4 0.06 2E-06 52.4 14.7 40 462-501 173-213 (236)
150 3vaa_A Shikimate kinase, SK; s 96.4 0.0022 7.6E-08 61.5 4.2 25 379-403 25-49 (199)
151 3iij_A Coilin-interacting nucl 96.3 0.0025 8.5E-08 59.8 4.1 24 380-403 12-35 (180)
152 1via_A Shikimate kinase; struc 96.3 0.0023 8E-08 59.8 3.8 24 380-403 5-28 (175)
153 2oxc_A Probable ATP-dependent 96.3 0.065 2.2E-06 52.1 14.4 39 462-500 168-208 (230)
154 3bor_A Human initiation factor 96.3 0.046 1.6E-06 53.6 13.3 39 462-500 175-214 (237)
155 1kag_A SKI, shikimate kinase I 96.3 0.0021 7.2E-08 59.6 3.3 23 381-403 6-28 (173)
156 1rif_A DAR protein, DNA helica 96.3 0.054 1.8E-06 54.5 14.1 39 362-403 114-152 (282)
157 3fht_A ATP-dependent RNA helic 96.2 0.086 3E-06 54.9 15.9 40 462-501 170-211 (412)
158 1kht_A Adenylate kinase; phosp 96.2 0.0026 8.9E-08 59.5 3.6 24 381-404 5-28 (192)
159 1nks_A Adenylate kinase; therm 96.2 0.0025 8.4E-08 59.7 3.4 25 381-405 3-27 (194)
160 4eun_A Thermoresistant glucoki 96.2 0.0032 1.1E-07 60.4 4.2 26 378-403 28-53 (200)
161 3b6e_A Interferon-induced heli 96.2 0.031 1.1E-06 53.0 11.1 37 364-403 36-72 (216)
162 3foz_A TRNA delta(2)-isopenten 96.2 0.024 8.3E-07 59.2 11.0 23 381-403 12-34 (316)
163 1u94_A RECA protein, recombina 96.1 0.014 4.8E-07 61.9 9.4 24 381-404 65-88 (356)
164 1xx6_A Thymidine kinase; NESG, 96.1 0.0051 1.7E-07 59.6 5.5 35 462-499 83-117 (191)
165 3sop_A Neuronal-specific septi 96.1 0.061 2.1E-06 54.6 13.7 23 381-403 4-26 (270)
166 1xp8_A RECA protein, recombina 96.1 0.021 7.1E-07 60.8 10.6 24 381-404 76-99 (366)
167 1ly1_A Polynucleotide kinase; 96.1 0.0028 9.5E-08 58.8 3.3 22 381-402 4-25 (181)
168 3ly5_A ATP-dependent RNA helic 96.1 0.038 1.3E-06 55.3 11.9 38 462-499 203-241 (262)
169 2zr9_A Protein RECA, recombina 96.1 0.0086 2.9E-07 63.3 7.3 24 381-404 63-86 (349)
170 2rhm_A Putative kinase; P-loop 96.1 0.003 1E-07 59.4 3.4 23 381-403 7-29 (193)
171 1hv8_A Putative ATP-dependent 96.1 0.086 2.9E-06 53.8 14.7 33 369-403 36-68 (367)
172 2iyv_A Shikimate kinase, SK; t 96.1 0.0035 1.2E-07 58.9 3.8 24 380-403 3-26 (184)
173 1zuh_A Shikimate kinase; alpha 96.1 0.0037 1.3E-07 57.9 3.9 25 379-403 7-31 (168)
174 3ber_A Probable ATP-dependent 96.0 0.075 2.6E-06 52.7 13.6 39 462-500 188-227 (249)
175 3lxw_A GTPase IMAP family memb 96.0 0.087 3E-06 52.3 14.0 22 381-402 23-44 (247)
176 3h1t_A Type I site-specific re 96.0 0.025 8.6E-07 63.2 11.0 41 363-404 183-223 (590)
177 3cm0_A Adenylate kinase; ATP-b 96.0 0.0039 1.3E-07 58.5 3.6 23 381-403 6-28 (186)
178 3fmp_B ATP-dependent RNA helic 96.0 0.094 3.2E-06 56.7 15.2 41 462-502 237-279 (479)
179 3hr8_A Protein RECA; alpha and 96.0 0.021 7.1E-07 60.6 9.7 36 369-404 48-86 (356)
180 3t61_A Gluconokinase; PSI-biol 96.0 0.0039 1.3E-07 59.6 3.7 24 380-403 19-42 (202)
181 1e6c_A Shikimate kinase; phosp 96.0 0.0045 1.5E-07 57.2 3.9 24 380-403 3-26 (173)
182 2c95_A Adenylate kinase 1; tra 95.9 0.0047 1.6E-07 58.2 4.0 24 380-403 10-33 (196)
183 1aky_A Adenylate kinase; ATP:A 95.9 0.0049 1.7E-07 59.8 4.2 24 380-403 5-28 (220)
184 4b3f_X DNA-binding protein smu 95.9 0.018 6.1E-07 65.5 9.3 42 361-404 189-230 (646)
185 1s2m_A Putative ATP-dependent 95.9 0.15 5.2E-06 53.1 15.8 23 381-403 60-82 (400)
186 3uie_A Adenylyl-sulfate kinase 95.9 0.0065 2.2E-07 58.2 4.8 25 380-404 26-50 (200)
187 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.072 2.5E-06 55.7 13.2 37 365-403 159-195 (330)
188 1tev_A UMP-CMP kinase; ploop, 95.9 0.0046 1.6E-07 57.9 3.6 23 381-403 5-27 (196)
189 1v5w_A DMC1, meiotic recombina 95.9 0.022 7.7E-07 59.7 9.3 23 381-403 124-146 (343)
190 2cdn_A Adenylate kinase; phosp 95.9 0.0045 1.5E-07 59.1 3.6 23 381-403 22-44 (201)
191 2plr_A DTMP kinase, probable t 95.9 0.0046 1.6E-07 58.8 3.6 24 381-404 6-29 (213)
192 1y63_A LMAJ004144AAA protein; 95.8 0.0056 1.9E-07 57.9 4.1 26 380-405 11-36 (184)
193 1zak_A Adenylate kinase; ATP:A 95.8 0.0054 1.8E-07 59.6 4.0 24 380-403 6-29 (222)
194 1gvn_B Zeta; postsegregational 95.8 0.0073 2.5E-07 61.9 5.1 23 381-403 35-57 (287)
195 2bwj_A Adenylate kinase 5; pho 95.8 0.0047 1.6E-07 58.3 3.4 24 380-403 13-36 (199)
196 1ltq_A Polynucleotide kinase; 95.8 0.066 2.3E-06 54.1 12.2 23 381-403 4-26 (301)
197 3cmu_A Protein RECA, recombina 95.8 0.027 9.4E-07 71.4 10.9 24 381-404 1083-1106(2050)
198 2jaq_A Deoxyguanosine kinase; 95.8 0.0054 1.9E-07 57.9 3.6 23 381-403 2-24 (205)
199 1zp6_A Hypothetical protein AT 95.7 0.0039 1.3E-07 58.7 2.6 22 381-402 11-32 (191)
200 1knq_A Gluconate kinase; ALFA/ 95.7 0.0056 1.9E-07 56.9 3.7 23 381-403 10-32 (175)
201 3lxx_A GTPase IMAP family memb 95.7 0.037 1.3E-06 54.2 9.8 23 380-402 30-52 (239)
202 1qf9_A UMP/CMP kinase, protein 95.7 0.0053 1.8E-07 57.4 3.4 23 381-403 8-30 (194)
203 3zvl_A Bifunctional polynucleo 95.7 0.017 5.7E-07 62.4 7.8 24 380-403 259-282 (416)
204 3fe2_A Probable ATP-dependent 95.7 0.2 6.8E-06 49.0 15.0 38 462-499 178-216 (242)
205 1ak2_A Adenylate kinase isoenz 95.7 0.007 2.4E-07 59.5 4.3 24 380-403 17-40 (233)
206 3kl4_A SRP54, signal recogniti 95.7 0.077 2.6E-06 57.7 12.8 24 381-404 99-122 (433)
207 3tlx_A Adenylate kinase 2; str 95.7 0.011 3.8E-07 58.8 5.8 24 380-403 30-53 (243)
208 2p5t_B PEZT; postsegregational 95.7 0.0085 2.9E-07 59.9 4.9 23 381-403 34-56 (253)
209 2vli_A Antibiotic resistance p 95.7 0.0036 1.2E-07 58.4 2.0 24 380-403 6-29 (183)
210 1xti_A Probable ATP-dependent 95.6 0.16 5.3E-06 52.6 14.6 39 462-500 154-194 (391)
211 2pt5_A Shikimate kinase, SK; a 95.6 0.0066 2.3E-07 55.8 3.6 23 381-403 2-24 (168)
212 1zd8_A GTP:AMP phosphotransfer 95.6 0.0051 1.8E-07 60.1 2.9 24 380-403 8-31 (227)
213 4gzl_A RAS-related C3 botulinu 95.6 0.022 7.5E-07 54.3 7.2 41 362-402 13-53 (204)
214 2wwf_A Thymidilate kinase, put 95.6 0.0065 2.2E-07 58.0 3.4 24 381-404 12-35 (212)
215 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.047 1.6E-06 49.8 9.1 22 381-402 9-30 (177)
216 1ukz_A Uridylate kinase; trans 95.5 0.007 2.4E-07 57.7 3.5 23 381-403 17-39 (203)
217 2pbr_A DTMP kinase, thymidylat 95.5 0.0076 2.6E-07 56.5 3.7 24 381-404 2-25 (195)
218 3be4_A Adenylate kinase; malar 95.5 0.007 2.4E-07 58.8 3.5 24 380-403 6-29 (217)
219 2qor_A Guanylate kinase; phosp 95.5 0.0064 2.2E-07 58.4 3.1 23 381-403 14-36 (204)
220 3dz8_A RAS-related protein RAB 95.5 0.074 2.5E-06 49.7 10.4 23 381-403 25-47 (191)
221 3dm5_A SRP54, signal recogniti 95.5 0.1 3.5E-06 57.0 12.8 25 381-405 102-126 (443)
222 1e4v_A Adenylate kinase; trans 95.5 0.0077 2.6E-07 58.2 3.6 23 381-403 2-24 (214)
223 2bdt_A BH3686; alpha-beta prot 95.4 0.0074 2.5E-07 56.9 3.3 23 381-403 4-26 (189)
224 3umf_A Adenylate kinase; rossm 95.4 0.0085 2.9E-07 59.3 3.9 24 380-403 30-53 (217)
225 3io5_A Recombination and repai 95.4 0.061 2.1E-06 56.4 10.5 35 370-404 14-53 (333)
226 3iuy_A Probable ATP-dependent 95.4 0.23 7.9E-06 47.9 14.1 38 462-499 169-207 (228)
227 3c8u_A Fructokinase; YP_612366 95.4 0.01 3.5E-07 57.3 4.3 24 381-404 24-47 (208)
228 4dkx_A RAS-related protein RAB 95.4 0.026 8.9E-07 55.3 7.3 22 381-402 15-36 (216)
229 1nn5_A Similar to deoxythymidy 95.4 0.0078 2.7E-07 57.5 3.4 24 381-404 11-34 (215)
230 1cke_A CK, MSSA, protein (cyti 95.4 0.0083 2.9E-07 58.0 3.6 23 381-403 7-29 (227)
231 1z0f_A RAB14, member RAS oncog 95.4 0.071 2.4E-06 48.4 9.8 22 381-402 17-38 (179)
232 2yvu_A Probable adenylyl-sulfa 95.4 0.0087 3E-07 56.4 3.6 24 381-404 15-38 (186)
233 2wsm_A Hydrogenase expression/ 95.4 0.01 3.5E-07 57.0 4.2 45 359-403 10-54 (221)
234 1z08_A RAS-related protein RAB 95.4 0.073 2.5E-06 48.0 9.7 22 381-402 8-29 (170)
235 2bbw_A Adenylate kinase 4, AK4 95.4 0.0087 3E-07 59.2 3.6 24 380-403 28-51 (246)
236 2ew1_A RAS-related protein RAB 95.3 0.11 3.8E-06 49.6 11.3 22 381-402 28-49 (201)
237 2xb4_A Adenylate kinase; ATP-b 95.3 0.0091 3.1E-07 58.4 3.6 23 381-403 2-24 (223)
238 1ek0_A Protein (GTP-binding pr 95.3 0.035 1.2E-06 50.0 7.2 22 381-402 5-26 (170)
239 1p9r_A General secretion pathw 95.3 0.02 7E-07 62.0 6.6 49 355-404 144-192 (418)
240 1kgd_A CASK, peripheral plasma 95.3 0.0096 3.3E-07 56.2 3.5 23 381-403 7-29 (180)
241 1rz3_A Hypothetical protein rb 95.3 0.023 7.8E-07 54.5 6.2 39 365-403 5-46 (201)
242 3pqc_A Probable GTP-binding pr 95.2 0.14 4.8E-06 47.2 11.4 23 380-402 24-46 (195)
243 2bme_A RAB4A, RAS-related prot 95.2 0.05 1.7E-06 50.1 8.2 22 381-402 12-33 (186)
244 3tkl_A RAS-related protein RAB 95.2 0.062 2.1E-06 49.9 8.8 22 381-402 18-39 (196)
245 3tr0_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 56.3 3.5 23 381-403 9-31 (205)
246 1z06_A RAS-related protein RAB 95.2 0.057 2E-06 50.3 8.6 22 381-402 22-43 (189)
247 1m7b_A RND3/RHOE small GTP-bin 95.2 0.19 6.5E-06 46.5 12.1 22 381-402 9-30 (184)
248 3fho_A ATP-dependent RNA helic 95.2 0.11 3.9E-06 56.9 12.3 40 462-501 261-302 (508)
249 2v54_A DTMP kinase, thymidylat 95.2 0.0082 2.8E-07 56.9 2.6 23 381-403 6-28 (204)
250 2j41_A Guanylate kinase; GMP, 95.1 0.011 3.6E-07 56.2 3.3 23 381-403 8-30 (207)
251 1ky3_A GTP-binding protein YPT 95.1 0.095 3.2E-06 47.7 9.8 22 381-402 10-31 (182)
252 2oca_A DAR protein, ATP-depend 95.1 0.29 1E-05 53.1 15.1 38 363-403 115-152 (510)
253 1m7g_A Adenylylsulfate kinase; 95.1 0.021 7.1E-07 55.1 5.3 25 380-404 26-50 (211)
254 2j0s_A ATP-dependent RNA helic 95.1 0.19 6.4E-06 52.6 13.1 39 462-500 181-220 (410)
255 3vkw_A Replicase large subunit 95.1 0.029 9.9E-07 61.2 6.9 35 461-499 235-269 (446)
256 3tw8_B RAS-related protein RAB 95.1 0.028 9.6E-07 51.3 5.9 21 381-401 11-31 (181)
257 1wp9_A ATP-dependent RNA helic 95.0 0.2 7E-06 52.5 13.3 23 381-403 25-47 (494)
258 2efe_B Small GTP-binding prote 95.0 0.063 2.2E-06 49.1 8.2 22 381-402 14-35 (181)
259 2hf9_A Probable hydrogenase ni 95.0 0.023 7.9E-07 54.7 5.4 42 363-404 22-63 (226)
260 1gwn_A RHO-related GTP-binding 95.0 0.23 7.9E-06 47.4 12.4 22 381-402 30-51 (205)
261 3dkp_A Probable ATP-dependent 95.0 0.51 1.7E-05 45.9 15.1 20 381-400 68-87 (245)
262 3q3j_B RHO-related GTP-binding 95.0 0.16 5.6E-06 48.7 11.3 22 381-402 29-50 (214)
263 3tau_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 56.8 3.3 23 381-403 10-32 (208)
264 2pez_A Bifunctional 3'-phospho 95.0 0.014 4.9E-07 54.5 3.6 23 381-403 7-29 (179)
265 1z0j_A RAB-22, RAS-related pro 95.0 0.063 2.1E-06 48.4 7.9 22 381-402 8-29 (170)
266 1zbd_A Rabphilin-3A; G protein 94.9 0.075 2.6E-06 49.9 8.7 22 381-402 10-31 (203)
267 1tf7_A KAIC; homohexamer, hexa 94.9 0.057 1.9E-06 59.8 9.0 23 381-403 41-65 (525)
268 2z0m_A 337AA long hypothetical 94.9 0.28 9.7E-06 49.3 13.5 23 381-403 33-55 (337)
269 2xau_A PRE-mRNA-splicing facto 94.9 0.23 8E-06 57.8 14.4 32 369-402 101-132 (773)
270 1fuu_A Yeast initiation factor 94.9 0.17 5.8E-06 52.3 12.0 40 462-501 164-204 (394)
271 3reg_A RHO-like small GTPase; 94.9 0.057 1.9E-06 50.5 7.7 22 381-402 25-46 (194)
272 2nzj_A GTP-binding protein REM 94.9 0.1 3.5E-06 47.3 9.2 22 381-402 6-27 (175)
273 1u8z_A RAS-related protein RAL 94.9 0.14 4.7E-06 45.8 9.9 22 381-402 6-27 (168)
274 1r2q_A RAS-related protein RAB 94.9 0.055 1.9E-06 48.6 7.2 22 381-402 8-29 (170)
275 3e2i_A Thymidine kinase; Zn-bi 94.9 0.037 1.3E-06 54.8 6.4 33 462-497 103-135 (219)
276 3a00_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 55.4 3.1 23 381-403 3-25 (186)
277 1svi_A GTP-binding protein YSX 94.8 0.18 6.2E-06 46.7 11.0 24 379-402 23-46 (195)
278 2w0m_A SSO2452; RECA, SSPF, un 94.8 0.016 5.4E-07 55.6 3.7 23 381-403 25-47 (235)
279 1gtv_A TMK, thymidylate kinase 94.8 0.0089 3.1E-07 57.1 1.8 24 381-404 2-25 (214)
280 3q85_A GTP-binding protein REM 94.8 0.054 1.8E-06 49.0 7.1 21 381-401 4-24 (169)
281 2yc2_C IFT27, small RAB-relate 94.8 0.098 3.3E-06 49.0 9.1 22 381-402 22-43 (208)
282 2orv_A Thymidine kinase; TP4A 94.8 0.057 2E-06 54.0 7.7 34 462-499 92-125 (234)
283 1kao_A RAP2A; GTP-binding prot 94.8 0.55 1.9E-05 41.7 13.6 22 381-402 5-26 (167)
284 2g6b_A RAS-related protein RAB 94.8 0.15 5.1E-06 46.5 10.0 22 381-402 12-33 (180)
285 3eiq_A Eukaryotic initiation f 94.7 0.27 9.3E-06 51.2 13.2 39 462-500 185-224 (414)
286 2if2_A Dephospho-COA kinase; a 94.7 0.014 4.9E-07 55.5 3.1 21 381-401 3-23 (204)
287 1z2a_A RAS-related protein RAB 94.7 0.045 1.5E-06 49.2 6.3 22 381-402 7-28 (168)
288 3con_A GTPase NRAS; structural 94.7 0.13 4.3E-06 47.7 9.5 22 381-402 23-44 (190)
289 3ake_A Cytidylate kinase; CMP 94.7 0.02 6.7E-07 54.4 3.9 23 381-403 4-26 (208)
290 3bc1_A RAS-related protein RAB 94.7 0.13 4.3E-06 47.3 9.3 22 381-402 13-34 (195)
291 1lvg_A Guanylate kinase, GMP k 94.6 0.019 6.5E-07 55.2 3.6 23 381-403 6-28 (198)
292 3r20_A Cytidylate kinase; stru 94.6 0.02 6.8E-07 57.2 3.8 23 381-403 11-33 (233)
293 1ex7_A Guanylate kinase; subst 94.6 0.02 6.8E-07 55.2 3.6 23 381-403 3-25 (186)
294 1jjv_A Dephospho-COA kinase; P 94.6 0.016 5.3E-07 55.5 2.8 21 381-401 4-24 (206)
295 2va8_A SSO2462, SKI2-type heli 94.6 0.18 6.1E-06 57.6 12.1 21 380-400 47-67 (715)
296 1odf_A YGR205W, hypothetical 3 94.5 0.041 1.4E-06 56.5 6.1 24 381-404 33-56 (290)
297 2bcg_Y Protein YP2, GTP-bindin 94.5 0.098 3.3E-06 49.3 8.3 22 381-402 10-31 (206)
298 1mh1_A RAC1; GTP-binding, GTPa 94.5 0.1 3.5E-06 47.8 8.2 22 381-402 7-28 (186)
299 3asz_A Uridine kinase; cytidin 94.5 0.02 7E-07 54.7 3.4 23 381-403 8-30 (211)
300 2fwr_A DNA repair protein RAD2 94.5 0.16 5.4E-06 54.7 10.9 39 362-403 94-132 (472)
301 3l9o_A ATP-dependent RNA helic 94.5 0.26 8.8E-06 59.7 13.7 24 380-403 200-223 (1108)
302 2fg5_A RAB-22B, RAS-related pr 94.4 0.076 2.6E-06 49.7 7.3 22 381-402 25-46 (192)
303 3bh0_A DNAB-like replicative h 94.4 0.32 1.1E-05 50.1 12.7 35 369-404 57-93 (315)
304 2y8e_A RAB-protein 6, GH09086P 94.4 0.05 1.7E-06 49.5 5.8 22 381-402 16-37 (179)
305 3cph_A RAS-related protein SEC 94.4 0.079 2.7E-06 50.0 7.4 22 381-402 22-43 (213)
306 2a9k_A RAS-related protein RAL 94.4 0.14 4.9E-06 46.7 8.9 22 381-402 20-41 (187)
307 3nwj_A ATSK2; P loop, shikimat 94.4 0.024 8.1E-07 57.2 3.8 25 381-406 50-74 (250)
308 1znw_A Guanylate kinase, GMP k 94.4 0.021 7E-07 55.0 3.2 23 381-403 22-44 (207)
309 2bov_A RAla, RAS-related prote 94.3 0.19 6.4E-06 47.0 9.8 22 381-402 16-37 (206)
310 1g16_A RAS-related protein SEC 94.3 0.056 1.9E-06 48.7 5.9 22 381-402 5-26 (170)
311 2fu5_C RAS-related protein RAB 94.3 0.059 2E-06 49.6 6.2 22 381-402 10-31 (183)
312 2o52_A RAS-related protein RAB 94.3 0.072 2.5E-06 50.4 7.0 22 381-402 27-48 (200)
313 3t5g_A GTP-binding protein RHE 94.3 0.25 8.6E-06 45.2 10.5 22 381-402 8-29 (181)
314 2gf9_A RAS-related protein RAB 94.3 0.078 2.7E-06 49.3 7.0 22 381-402 24-45 (189)
315 2il1_A RAB12; G-protein, GDP, 94.3 0.11 3.8E-06 48.7 8.1 22 381-402 28-49 (192)
316 2hup_A RAS-related protein RAB 94.3 0.086 3E-06 50.0 7.4 22 381-402 31-52 (201)
317 2gco_A H9, RHO-related GTP-bin 94.3 0.11 3.7E-06 49.1 8.1 22 381-402 27-48 (201)
318 1uf9_A TT1252 protein; P-loop, 94.3 0.024 8.2E-07 53.5 3.4 22 381-402 10-31 (203)
319 2p5s_A RAS and EF-hand domain 94.3 0.091 3.1E-06 49.5 7.5 22 381-402 30-51 (199)
320 4dhe_A Probable GTP-binding pr 94.3 0.11 3.8E-06 49.5 8.2 24 379-402 29-52 (223)
321 2qag_C Septin-7; cell cycle, c 94.2 0.15 5.2E-06 55.1 10.1 23 381-403 33-55 (418)
322 2ce2_X GTPase HRAS; signaling 94.2 0.13 4.5E-06 45.7 8.0 22 381-402 5-26 (166)
323 4eaq_A DTMP kinase, thymidylat 94.2 0.027 9.1E-07 55.7 3.6 24 381-404 28-51 (229)
324 4gp7_A Metallophosphoesterase; 94.1 0.031 1.1E-06 52.3 3.8 18 381-398 11-28 (171)
325 1uj2_A Uridine-cytidine kinase 94.1 0.025 8.4E-07 56.3 3.3 23 381-403 24-46 (252)
326 2eyu_A Twitching motility prot 94.1 0.035 1.2E-06 56.1 4.5 24 381-404 27-50 (261)
327 2a5j_A RAS-related protein RAB 94.1 0.075 2.6E-06 49.6 6.6 22 381-402 23-44 (191)
328 3ney_A 55 kDa erythrocyte memb 94.1 0.027 9.1E-07 54.9 3.5 23 381-403 21-43 (197)
329 1z6g_A Guanylate kinase; struc 94.1 0.024 8.4E-07 55.3 3.2 23 381-403 25-47 (218)
330 4e22_A Cytidylate kinase; P-lo 94.1 0.025 8.6E-07 56.5 3.3 23 381-403 29-51 (252)
331 2j1l_A RHO-related GTP-binding 94.1 0.1 3.5E-06 50.0 7.5 22 381-402 36-57 (214)
332 2oil_A CATX-8, RAS-related pro 94.1 0.062 2.1E-06 50.1 5.8 22 381-402 27-48 (193)
333 2atx_A Small GTP binding prote 94.1 0.13 4.4E-06 47.9 8.0 22 381-402 20-41 (194)
334 1htw_A HI0065; nucleotide-bind 94.0 0.029 1E-06 52.4 3.3 23 381-403 35-57 (158)
335 2i3b_A HCR-ntpase, human cance 94.0 0.032 1.1E-06 53.7 3.7 66 460-528 105-180 (189)
336 1sky_E F1-ATPase, F1-ATP synth 94.0 0.16 5.6E-06 55.7 9.7 36 366-404 141-176 (473)
337 2oap_1 GSPE-2, type II secreti 94.0 0.027 9.3E-07 62.5 3.6 39 363-403 246-284 (511)
338 3llu_A RAS-related GTP-binding 93.9 0.061 2.1E-06 50.7 5.5 21 381-401 22-42 (196)
339 3cpj_B GTP-binding protein YPT 93.9 0.12 4E-06 49.8 7.6 22 381-402 15-36 (223)
340 3cmw_A Protein RECA, recombina 93.9 0.086 2.9E-06 66.1 8.1 23 381-403 36-58 (1706)
341 2qt1_A Nicotinamide riboside k 93.9 0.024 8.1E-07 54.3 2.6 23 381-403 23-45 (207)
342 3clv_A RAB5 protein, putative; 93.8 0.15 5E-06 47.1 7.8 22 381-402 9-30 (208)
343 4dsu_A GTPase KRAS, isoform 2B 93.8 0.22 7.6E-06 45.6 9.0 22 381-402 6-27 (189)
344 2eyq_A TRCF, transcription-rep 93.8 0.63 2.1E-05 56.6 15.3 40 363-402 608-647 (1151)
345 2gk6_A Regulator of nonsense t 93.7 0.059 2E-06 61.1 5.9 39 363-404 182-220 (624)
346 1x3s_A RAS-related protein RAB 93.7 0.11 3.9E-06 47.9 6.9 22 381-402 17-38 (195)
347 2dr3_A UPF0273 protein PH0284; 93.7 0.035 1.2E-06 53.9 3.4 23 381-403 25-47 (247)
348 2atv_A RERG, RAS-like estrogen 93.7 0.17 5.9E-06 47.3 8.2 22 381-402 30-51 (196)
349 1vg8_A RAS-related protein RAB 93.7 0.12 4.2E-06 48.4 7.1 22 381-402 10-31 (207)
350 1ewq_A DNA mismatch repair pro 93.7 0.23 7.9E-06 57.7 10.8 23 381-403 578-600 (765)
351 3ihw_A Centg3; RAS, centaurin, 93.7 0.15 5.1E-06 47.6 7.7 22 381-402 22-43 (184)
352 3bwd_D RAC-like GTP-binding pr 93.6 0.092 3.1E-06 48.0 6.0 22 381-402 10-31 (182)
353 2xgj_A ATP-dependent RNA helic 93.6 0.61 2.1E-05 55.9 14.5 22 381-402 103-124 (1010)
354 1g8f_A Sulfate adenylyltransfe 93.6 0.046 1.6E-06 60.7 4.5 42 363-404 377-420 (511)
355 1vht_A Dephospho-COA kinase; s 93.5 0.038 1.3E-06 53.3 3.3 21 381-401 6-26 (218)
356 3oes_A GTPase rhebl1; small GT 93.5 0.27 9.4E-06 46.2 9.3 22 381-402 26-47 (201)
357 1s96_A Guanylate kinase, GMP k 93.5 0.036 1.2E-06 54.6 3.2 23 381-403 18-40 (219)
358 1nlf_A Regulatory protein REPA 93.5 0.038 1.3E-06 55.7 3.4 24 381-404 32-55 (279)
359 2db3_A ATP-dependent RNA helic 93.5 1.3 4.3E-05 47.4 15.6 19 380-398 94-112 (434)
360 3q72_A GTP-binding protein RAD 93.5 0.16 5.3E-06 45.7 7.2 21 381-401 4-24 (166)
361 2h17_A ADP-ribosylation factor 93.5 0.23 8E-06 45.8 8.6 22 381-402 23-44 (181)
362 1wrb_A DJVLGB; RNA helicase, D 93.5 0.91 3.1E-05 44.4 13.4 21 380-400 61-81 (253)
363 2fv8_A H6, RHO-related GTP-bin 93.5 0.12 4E-06 49.1 6.6 22 381-402 27-48 (207)
364 3lnc_A Guanylate kinase, GMP k 93.4 0.025 8.5E-07 55.2 1.9 23 381-403 29-52 (231)
365 1xjc_A MOBB protein homolog; s 93.4 0.052 1.8E-06 51.6 4.0 26 379-404 4-29 (169)
366 1cr0_A DNA primase/helicase; R 93.4 0.04 1.4E-06 55.9 3.4 24 381-404 37-60 (296)
367 3a8t_A Adenylate isopentenyltr 93.4 0.029 1E-06 59.2 2.4 26 380-405 41-66 (339)
368 2jeo_A Uridine-cytidine kinase 93.3 0.046 1.6E-06 54.0 3.7 23 381-403 27-49 (245)
369 2iwr_A Centaurin gamma 1; ANK 93.3 0.11 3.9E-06 47.4 6.1 22 381-402 9-30 (178)
370 2p6r_A Afuhel308 helicase; pro 93.3 0.37 1.3E-05 55.0 11.5 21 380-400 41-61 (702)
371 1np6_A Molybdopterin-guanine d 93.3 0.058 2E-06 51.3 4.0 26 379-404 6-31 (174)
372 2j0v_A RAC-like GTP-binding pr 93.3 0.13 4.3E-06 48.8 6.5 22 381-402 11-32 (212)
373 2grj_A Dephospho-COA kinase; T 93.2 0.051 1.7E-06 52.4 3.7 22 382-403 15-36 (192)
374 2q3h_A RAS homolog gene family 93.2 0.1 3.5E-06 48.9 5.7 22 381-402 22-43 (201)
375 3kkq_A RAS-related protein M-R 93.2 0.18 6.1E-06 46.3 7.3 22 381-402 20-41 (183)
376 1q3t_A Cytidylate kinase; nucl 93.2 0.063 2.2E-06 52.7 4.3 23 381-403 18-40 (236)
377 2h92_A Cytidylate kinase; ross 93.2 0.047 1.6E-06 52.5 3.3 23 381-403 5-27 (219)
378 1rj9_A FTSY, signal recognitio 93.2 0.06 2.1E-06 55.7 4.3 24 381-404 104-127 (304)
379 3cbq_A GTP-binding protein REM 93.1 0.13 4.5E-06 48.6 6.2 21 381-401 25-45 (195)
380 2q6t_A DNAB replication FORK h 93.1 0.83 2.8E-05 49.3 13.3 35 369-404 189-225 (444)
381 2fh5_B SR-beta, signal recogni 93.0 0.55 1.9E-05 44.4 10.6 23 380-402 8-30 (214)
382 3ice_A Transcription terminati 93.0 0.32 1.1E-05 52.4 9.7 29 376-404 171-199 (422)
383 2ged_A SR-beta, signal recogni 93.0 0.096 3.3E-06 48.7 5.1 24 379-402 48-71 (193)
384 3gj0_A GTP-binding nuclear pro 92.9 0.067 2.3E-06 51.3 4.1 22 381-402 17-38 (221)
385 3kta_A Chromosome segregation 92.9 0.054 1.8E-06 50.5 3.3 25 381-405 28-52 (182)
386 3tqc_A Pantothenate kinase; bi 92.9 0.12 4E-06 54.1 6.1 24 381-404 94-117 (321)
387 3aez_A Pantothenate kinase; tr 92.9 0.055 1.9E-06 56.2 3.6 24 381-404 92-115 (312)
388 2zj8_A DNA helicase, putative 92.9 0.45 1.5E-05 54.5 11.5 24 380-403 40-64 (720)
389 2v9p_A Replication protein E1; 92.9 0.056 1.9E-06 56.1 3.6 23 381-403 128-150 (305)
390 2f7s_A C25KG, RAS-related prot 92.9 0.18 6.2E-06 47.9 7.0 21 381-401 27-47 (217)
391 3d3q_A TRNA delta(2)-isopenten 92.9 0.052 1.8E-06 57.3 3.3 24 381-404 9-32 (340)
392 2xtp_A GTPase IMAP family memb 92.8 0.24 8.2E-06 48.9 8.0 23 380-402 23-45 (260)
393 2v6i_A RNA helicase; membrane, 92.7 0.35 1.2E-05 52.0 9.7 23 380-402 3-26 (431)
394 2wjy_A Regulator of nonsense t 92.7 0.1 3.4E-06 61.1 5.8 40 363-405 358-397 (800)
395 2dyk_A GTP-binding protein; GT 92.7 0.065 2.2E-06 47.9 3.3 23 380-402 2-24 (161)
396 1sq5_A Pantothenate kinase; P- 92.7 0.11 3.9E-06 53.4 5.5 24 381-404 82-105 (308)
397 2gf0_A GTP-binding protein DI- 92.6 0.33 1.1E-05 45.0 8.3 22 381-402 10-31 (199)
398 3t5d_A Septin-7; GTP-binding p 92.6 0.37 1.3E-05 48.3 9.2 20 381-400 10-29 (274)
399 4edh_A DTMP kinase, thymidylat 92.6 0.07 2.4E-06 52.3 3.7 26 381-406 8-33 (213)
400 4a1f_A DNAB helicase, replicat 92.6 0.41 1.4E-05 50.3 9.8 24 381-404 48-71 (338)
401 1h65_A Chloroplast outer envel 92.5 0.35 1.2E-05 48.3 8.8 23 380-402 40-62 (270)
402 3p32_A Probable GTPase RV1496/ 92.5 0.12 4.2E-06 54.2 5.6 30 376-405 76-105 (355)
403 2zts_A Putative uncharacterize 92.4 0.071 2.4E-06 51.7 3.5 22 381-402 32-53 (251)
404 2ewv_A Twitching motility prot 92.4 0.069 2.4E-06 56.7 3.6 24 381-404 138-161 (372)
405 2h57_A ADP-ribosylation factor 92.4 0.44 1.5E-05 44.2 8.8 22 381-402 23-44 (190)
406 2f1r_A Molybdopterin-guanine d 92.4 0.053 1.8E-06 51.4 2.4 26 380-405 3-28 (171)
407 2f6r_A COA synthase, bifunctio 92.4 0.06 2E-06 54.8 2.9 21 381-401 77-97 (281)
408 3r7w_A Gtpase1, GTP-binding pr 92.3 0.69 2.4E-05 47.3 11.0 22 381-402 5-26 (307)
409 2qmh_A HPR kinase/phosphorylas 92.3 0.054 1.9E-06 53.1 2.4 23 381-403 36-58 (205)
410 1wb9_A DNA mismatch repair pro 92.3 0.18 6.3E-06 58.9 7.3 23 381-403 609-631 (800)
411 2gza_A Type IV secretion syste 92.3 0.087 3E-06 55.7 4.1 34 368-403 166-199 (361)
412 3b9q_A Chloroplast SRP recepto 92.2 0.078 2.7E-06 54.8 3.6 24 381-404 102-125 (302)
413 3cr8_A Sulfate adenylyltranfer 92.2 0.077 2.6E-06 59.5 3.9 41 364-404 352-394 (552)
414 3thx_B DNA mismatch repair pro 92.2 0.4 1.4E-05 56.9 10.0 22 381-402 675-696 (918)
415 3i5x_A ATP-dependent RNA helic 92.2 1.5 5.3E-05 48.0 14.3 31 368-399 101-131 (563)
416 2ocp_A DGK, deoxyguanosine kin 92.2 0.066 2.2E-06 52.6 2.9 24 381-404 4-27 (241)
417 2f9l_A RAB11B, member RAS onco 92.1 0.08 2.7E-06 49.9 3.3 22 381-402 7-28 (199)
418 3e70_C DPA, signal recognition 92.0 0.084 2.9E-06 55.3 3.6 24 381-404 131-154 (328)
419 2axn_A 6-phosphofructo-2-kinas 92.0 0.079 2.7E-06 58.9 3.6 24 381-404 37-60 (520)
420 1pzn_A RAD51, DNA repair and r 92.0 0.072 2.5E-06 56.0 3.1 23 381-403 133-155 (349)
421 1vma_A Cell division protein F 92.0 0.087 3E-06 54.6 3.6 24 381-404 106-129 (306)
422 3v9p_A DTMP kinase, thymidylat 91.9 0.067 2.3E-06 53.1 2.6 24 381-404 27-50 (227)
423 2xzl_A ATP-dependent helicase 91.8 0.13 4.5E-06 60.1 5.4 38 363-403 362-399 (802)
424 1oix_A RAS-related protein RAB 91.8 0.085 2.9E-06 49.7 3.1 23 381-403 31-53 (191)
425 1lw7_A Transcriptional regulat 91.7 0.082 2.8E-06 55.6 3.2 23 381-403 172-194 (365)
426 3tif_A Uncharacterized ABC tra 91.7 0.074 2.5E-06 52.8 2.6 23 381-403 33-55 (235)
427 2z43_A DNA repair and recombin 91.7 0.082 2.8E-06 54.8 3.1 23 381-403 109-131 (324)
428 3b85_A Phosphate starvation-in 91.7 0.067 2.3E-06 52.2 2.3 42 351-402 4-45 (208)
429 3thx_A DNA mismatch repair pro 91.7 0.43 1.5E-05 56.7 9.5 21 381-401 664-684 (934)
430 2yhs_A FTSY, cell division pro 91.7 0.17 6E-06 55.9 5.8 24 381-404 295-318 (503)
431 2px0_A Flagellar biosynthesis 91.6 0.095 3.3E-06 53.9 3.4 24 381-404 107-130 (296)
432 1p5z_B DCK, deoxycytidine kina 91.6 0.037 1.3E-06 55.3 0.3 24 380-403 25-48 (263)
433 3fvq_A Fe(3+) IONS import ATP- 91.6 0.08 2.8E-06 56.2 2.9 23 381-403 32-54 (359)
434 2onk_A Molybdate/tungstate ABC 91.6 0.09 3.1E-06 52.5 3.1 24 380-403 25-48 (240)
435 2pcj_A ABC transporter, lipopr 91.6 0.072 2.5E-06 52.4 2.4 23 381-403 32-54 (224)
436 3lv8_A DTMP kinase, thymidylat 91.5 0.1 3.5E-06 52.1 3.4 25 381-405 29-53 (236)
437 3def_A T7I23.11 protein; chlor 91.5 0.61 2.1E-05 46.4 9.2 22 381-402 38-59 (262)
438 2cbz_A Multidrug resistance-as 91.4 0.084 2.9E-06 52.4 2.6 50 462-513 147-200 (237)
439 3sqw_A ATP-dependent RNA helic 91.4 2.1 7.2E-05 47.5 14.3 32 368-400 50-81 (579)
440 4a2p_A RIG-I, retinoic acid in 91.3 3.3 0.00011 44.7 15.6 24 380-403 23-46 (556)
441 1wf3_A GTP-binding protein; GT 91.3 0.61 2.1E-05 47.8 9.2 22 381-402 9-30 (301)
442 2gks_A Bifunctional SAT/APS ki 91.3 0.15 5.2E-06 57.0 4.9 42 363-404 354-397 (546)
443 3bgw_A DNAB-like replicative h 91.3 0.92 3.1E-05 49.2 11.0 24 381-404 199-222 (444)
444 1m8p_A Sulfate adenylyltransfe 91.3 0.12 4E-06 58.2 4.0 40 365-404 380-421 (573)
445 3fdi_A Uncharacterized protein 91.3 0.1 3.5E-06 50.4 3.1 27 380-407 7-33 (201)
446 1a7j_A Phosphoribulokinase; tr 91.3 0.069 2.4E-06 54.7 2.0 24 381-404 7-30 (290)
447 4f92_B U5 small nuclear ribonu 91.2 1.3 4.5E-05 56.0 13.7 33 366-400 931-963 (1724)
448 3eph_A TRNA isopentenyltransfe 91.2 0.11 3.7E-06 56.1 3.4 24 381-404 4-27 (409)
449 2og2_A Putative signal recogni 91.2 0.12 4E-06 54.9 3.6 24 381-404 159-182 (359)
450 3tmk_A Thymidylate kinase; pho 91.2 0.12 4E-06 51.0 3.4 24 381-404 7-30 (216)
451 1q57_A DNA primase/helicase; d 91.1 0.97 3.3E-05 49.5 11.1 24 381-404 244-267 (503)
452 1z47_A CYSA, putative ABC-tran 91.1 0.1 3.6E-06 55.2 3.2 23 381-403 43-65 (355)
453 3gmt_A Adenylate kinase; ssgci 91.1 0.13 4.4E-06 51.3 3.6 22 382-403 11-32 (230)
454 4tmk_A Protein (thymidylate ki 91.1 0.12 4.2E-06 50.6 3.4 26 381-406 5-30 (213)
455 1b0u_A Histidine permease; ABC 91.0 0.092 3.2E-06 53.0 2.6 23 381-403 34-56 (262)
456 3rlf_A Maltose/maltodextrin im 91.0 0.11 3.6E-06 55.8 3.1 23 381-403 31-53 (381)
457 2it1_A 362AA long hypothetical 91.0 0.11 3.6E-06 55.3 3.1 23 381-403 31-53 (362)
458 2yyz_A Sugar ABC transporter, 91.0 0.11 3.7E-06 55.2 3.2 23 381-403 31-53 (359)
459 3ld9_A DTMP kinase, thymidylat 91.0 0.13 4.6E-06 50.8 3.7 25 381-405 23-47 (223)
460 2zej_A Dardarin, leucine-rich 91.0 0.1 3.4E-06 48.6 2.6 21 381-401 4-24 (184)
461 2i1q_A DNA repair and recombin 91.0 0.11 3.9E-06 53.3 3.3 23 381-403 100-122 (322)
462 1bif_A 6-phosphofructo-2-kinas 90.9 0.12 4.2E-06 56.3 3.6 24 381-404 41-64 (469)
463 1sgw_A Putative ABC transporte 90.9 0.1 3.4E-06 51.3 2.6 23 381-403 37-59 (214)
464 2d2e_A SUFC protein; ABC-ATPas 90.9 0.12 4E-06 51.7 3.2 41 463-503 164-206 (250)
465 1v43_A Sugar-binding transport 90.9 0.11 3.8E-06 55.3 3.1 23 381-403 39-61 (372)
466 2zu0_C Probable ATP-dependent 90.9 0.12 4E-06 52.4 3.1 41 463-503 185-227 (267)
467 1g6h_A High-affinity branched- 90.8 0.1 3.5E-06 52.4 2.6 23 381-403 35-57 (257)
468 1g29_1 MALK, maltose transport 90.8 0.11 3.9E-06 55.2 3.2 23 381-403 31-53 (372)
469 1ji0_A ABC transporter; ATP bi 90.8 0.1 3.6E-06 51.8 2.6 23 381-403 34-56 (240)
470 2wji_A Ferrous iron transport 90.7 0.13 4.6E-06 46.8 3.2 22 381-402 5-26 (165)
471 3lda_A DNA repair protein RAD5 90.7 0.11 3.8E-06 55.9 2.9 22 381-402 180-201 (400)
472 1mv5_A LMRA, multidrug resista 90.7 0.11 3.6E-06 51.8 2.6 23 381-403 30-52 (243)
473 3d31_A Sulfate/molybdate ABC t 90.6 0.097 3.3E-06 55.3 2.4 23 381-403 28-50 (348)
474 2ff7_A Alpha-hemolysin translo 90.6 0.11 3.7E-06 52.0 2.6 23 381-403 37-59 (247)
475 2pze_A Cystic fibrosis transme 90.6 0.11 3.8E-06 51.2 2.6 41 462-502 150-192 (229)
476 3gfo_A Cobalt import ATP-bindi 90.5 0.11 3.8E-06 53.0 2.6 23 381-403 36-58 (275)
477 3tqf_A HPR(Ser) kinase; transf 90.5 0.14 4.9E-06 49.1 3.2 22 381-402 18-39 (181)
478 2olj_A Amino acid ABC transpor 90.4 0.11 3.9E-06 52.5 2.6 23 381-403 52-74 (263)
479 1f2t_A RAD50 ABC-ATPase; DNA d 90.4 0.18 6.3E-06 46.2 3.8 26 381-406 25-50 (149)
480 1c1y_A RAS-related protein RAP 90.3 0.16 5.6E-06 45.4 3.3 22 381-402 5-26 (167)
481 2ixe_A Antigen peptide transpo 90.3 0.12 4.1E-06 52.5 2.6 41 462-502 176-219 (271)
482 2erx_A GTP-binding protein DI- 90.3 0.16 5.4E-06 45.6 3.3 21 381-401 5-25 (172)
483 2lkc_A Translation initiation 90.3 0.19 6.5E-06 45.7 3.8 24 379-402 8-31 (178)
484 4g1u_C Hemin import ATP-bindin 90.3 0.12 4.1E-06 52.3 2.6 23 381-403 39-61 (266)
485 2ghi_A Transport protein; mult 90.2 0.12 4.2E-06 52.0 2.6 23 381-403 48-70 (260)
486 1x6v_B Bifunctional 3'-phospho 90.2 0.15 5.2E-06 58.0 3.7 24 381-404 54-77 (630)
487 2ihy_A ABC transporter, ATP-bi 90.2 0.12 4.1E-06 52.7 2.6 23 381-403 49-71 (279)
488 2qi9_C Vitamin B12 import ATP- 90.2 0.12 4.2E-06 51.8 2.6 23 381-403 28-50 (249)
489 2v3c_C SRP54, signal recogniti 90.1 0.14 4.7E-06 55.6 3.2 24 381-404 101-124 (432)
490 3gd7_A Fusion complex of cysti 90.1 0.13 4.6E-06 55.1 2.9 43 461-503 174-217 (390)
491 1oyw_A RECQ helicase, ATP-depe 90.1 0.51 1.7E-05 52.1 7.7 21 381-401 42-62 (523)
492 2wjg_A FEOB, ferrous iron tran 90.1 0.16 5.5E-06 46.8 3.2 22 381-402 9-30 (188)
493 1oxx_K GLCV, glucose, ABC tran 90.1 0.098 3.3E-06 55.3 1.8 23 381-403 33-55 (353)
494 1r8s_A ADP-ribosylation factor 90.0 0.18 6.3E-06 45.1 3.5 23 381-403 2-24 (164)
495 1vpl_A ABC transporter, ATP-bi 90.0 0.13 4.5E-06 51.8 2.6 23 381-403 43-65 (256)
496 2yz2_A Putative ABC transporte 90.0 0.13 4.5E-06 51.9 2.6 23 381-403 35-57 (266)
497 2z83_A Helicase/nucleoside tri 90.0 0.43 1.5E-05 51.8 6.9 24 380-403 22-46 (459)
498 3iev_A GTP-binding protein ERA 89.9 0.95 3.3E-05 46.3 9.2 22 381-402 12-33 (308)
499 3tbk_A RIG-I helicase domain; 89.9 3.4 0.00012 44.4 14.1 24 380-403 20-43 (555)
500 1zj6_A ADP-ribosylation factor 89.8 0.29 1E-05 45.2 4.8 25 377-401 14-38 (187)
No 1
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.4e-32 Score=287.43 Aligned_cols=282 Identities=26% Similarity=0.453 Sum_probs=219.8
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHH-HcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC---------CCCCc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELV-VDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWN---------EKWPT 415 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L-~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~---------~~~~~ 415 (629)
.+|++||+|.+|++++|++.+++.|+.++ ..+..+|++|+||+|+||||+++++++++.+..... ..+..
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 47999999999999999999999999999 888888999999999999999999999876543210 00111
Q ss_pred cccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccC------c-CCCCeEEEEEccchhhHHHHHHHHHHHhcc
Q 036742 416 QVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAIT------P-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGY 487 (629)
Q Consensus 416 ~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~------~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~ 487 (629)
+..+.......+++++++..... ...+.+.+.++....... . ....+||||||++.|....+++|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 22333334455677776432211 111223333322211111 1 225679999999999999999999999999
Q ss_pred CCCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 488 TDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLS-MTFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 488 ~~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is-~e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
..++.||++|+.+..++++|++||..+.|.+|+.+++..+|..++.++++.++ ++++..|++.++||+|+++++|+.+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred hcCC-CCCCCCCCc-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 567 ALNY-PFADDQPIP-LGWEEVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 567 ~~~~-~~~~~~~~~-~~~ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..+. .+.....++ .+|+..+.+++..++.......+..++..+++++..+.++..|+..|+
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~ 304 (354)
T 1sxj_E 242 LNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELT 304 (354)
T ss_dssp HTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7654 233222233 678888999999999888889999999999999999999999998875
No 2
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=1.9e-29 Score=265.91 Aligned_cols=262 Identities=18% Similarity=0.280 Sum_probs=204.4
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
..+|++||+|.+|++++|++++++.|..++..|..+|+||+||||||||++|+++|+.+.+... .
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~---------------~ 76 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY---------------S 76 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH---------------H
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc---------------c
Confidence 5689999999999999999999999999999999999999999999999999999999876532 1
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~ 504 (629)
..++++++++..+.. .+.+.++.+.+.... .....+|+||||+|.|+.+++++|++++|+++..+.||++||....++
T Consensus 77 ~~~~~~~~~~~~~~~-~ir~~i~~~~~~~~~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~ 154 (340)
T 1sxj_C 77 NMVLELNASDDRGID-VVRNQIKDFASTRQI-FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 154 (340)
T ss_dssp HHEEEECTTSCCSHH-HHHTHHHHHHHBCCS-SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ceEEEEcCcccccHH-HHHHHHHHHHhhccc-CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccc
Confidence 236788886655542 222333332221111 112467999999999999999999999999999999999999999999
Q ss_pred HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH--
Q 036742 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW-- 582 (629)
Q Consensus 505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~-- 582 (629)
++|++||..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|+++++|+.+............+...+
T Consensus 155 ~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~ 234 (340)
T 1sxj_C 155 PALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYE 234 (340)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHH
T ss_pred hhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987654322100011222222
Q ss_pred ------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Q 036742 583 ------EEVLIELAAEILADPSPKRLVMVRGKIQKLLA-EFVHPKLILLVMH 627 (629)
Q Consensus 583 ------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~-~~i~~~~i~~~La 627 (629)
...+.++...+..++ +......+++++. .+.++..|+..|.
T Consensus 235 ~~~~~~~~~i~~l~~~i~~~~----~~~al~~l~~l~~~~g~~~~~i~~~l~ 282 (340)
T 1sxj_C 235 CCGAPRPSDLKAVLKSILEDD----WGTAHYTLNKVRSAKGLALIDLIEGIV 282 (340)
T ss_dssp HTTCCCHHHHHHHHHHHHTSC----HHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 234455555554432 2345556777777 7888888887765
No 3
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=3.8e-28 Score=250.96 Aligned_cols=258 Identities=26% Similarity=0.406 Sum_probs=198.4
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
...+|+++|+|.+|++++|++++++.|..++..+..+++||+||||||||++|+++++.+.+...
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~--------------- 75 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW--------------- 75 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH---------------
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc---------------
Confidence 45689999999999999999999999999999999999999999999999999999999865421
Q ss_pred CcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742 424 SAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503 (629)
Q Consensus 424 S~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I 503 (629)
...++++++.+..+.. .+.+.+.+..... .......+||||||+|.+....+++|+++++++...+.||++||.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 76 RHNFLELNASDERGIN-VIREKVKEFARTK-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 153 (327)
T ss_dssp HHHEEEEETTCHHHHH-TTHHHHHHHHHSC-CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred cCceEEeeccccCchH-HHHHHHHHHHhhC-CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcccc
Confidence 1136778776544431 1122222222111 1111346799999999999999999999999999999999999999999
Q ss_pred hHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH-
Q 036742 504 IESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW- 582 (629)
Q Consensus 504 ~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~- 582 (629)
.+++++||..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|.+++.|+.+......+ ...++
T Consensus 154 ~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i-----~~~~v~ 228 (327)
T 1iqp_A 154 IEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKI-----TDENVF 228 (327)
T ss_dssp CHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEE-----CHHHHH
T ss_pred CHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCC-----CHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876533211 11111
Q ss_pred -------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HcCCCHHHHHHHHh
Q 036742 583 -------EEVLIELAAEILADPSPKRLVMVRGKIQKLL-AEFVHPKLILLVMH 627 (629)
Q Consensus 583 -------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL-~~~i~~~~i~~~La 627 (629)
...+.+++..++.+. +......+++++ ..+.++..|+..|.
T Consensus 229 ~~~~~~~~~~i~~l~~~~~~~~----~~~~~~~~~~ll~~~g~~~~~i~~~l~ 277 (327)
T 1iqp_A 229 MVASRARPEDIREMMLLALKGN----FLKAREKLREILLKQGLSGEDVLVQMH 277 (327)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223344444444432 233444566677 77888887776664
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.96 E-value=5e-28 Score=249.22 Aligned_cols=257 Identities=23% Similarity=0.366 Sum_probs=198.4
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
..+|+++|+|.+|++++|++.+++.|..++..+..+++||+||||||||++|+++++.+.+... .
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~---------------~ 68 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW---------------R 68 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH---------------H
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc---------------c
Confidence 3589999999999999999999999999999998889999999999999999999999865431 1
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~ 504 (629)
..++++++....+.. .+.+.+.+..... .......+||||||+|.+..+.++.|+++++.+...+.||++||....+.
T Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 69 DNFIEMNASDERGID-VVRHKIKEFARTA-PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp HHCEEEETTSTTCTT-TSSHHHHHHHHSC-CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred CCeEEEeCccccChH-HHHHHHHHHHhcC-CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 135777776543321 1112223222111 11123467999999999999999999999999999999999999999999
Q ss_pred HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCchhH--
Q 036742 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGW-- 582 (629)
Q Consensus 505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~-- 582 (629)
++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.+++.|+.+...+. .....++
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~-----~i~~~~v~~ 221 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE-----VVDADTIYQ 221 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSS-----CBCHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-----CCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998776422 1111222
Q ss_pred ------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Q 036742 583 ------EEVLIELAAEILADPSPKRLVMVRGKIQKLLA-EFVHPKLILLVMH 627 (629)
Q Consensus 583 ------ek~l~ei~~~il~~~s~~~L~~ir~kly~lL~-~~i~~~~i~~~La 627 (629)
...+.++...+..++ +......+++++. .+.++..|+..|.
T Consensus 222 ~~~~~~~~~~~~l~~~~~~~~----~~~a~~~l~~l~~~~g~~~~~i~~~l~ 269 (319)
T 2chq_A 222 ITATARPEEMTELIQTALKGN----FMEARELLDRLMVEYGMSGEDIVAQLF 269 (319)
T ss_dssp HTTCCCHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223445555554432 2334445667776 7888888777664
No 5
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.96 E-value=1.7e-28 Score=255.95 Aligned_cols=199 Identities=22% Similarity=0.392 Sum_probs=166.7
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeE-EEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHI-LIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~I-LL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
...+|++||+|.+|++++|++++++.|+.++..+..+++ ||+||||||||++|+++|+++ +..
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~~~--------------- 75 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-NAD--------------- 75 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-TEE---------------
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-CCC---------------
Confidence 356899999999999999999999999999999888765 667789999999999999987 322
Q ss_pred CCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-HHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 423 SSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-EHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
+++++++... . ..+.+.+.+...... .....+||||||+|.+. .+.+++|+++++.+...+.||++||...
T Consensus 76 ----~~~i~~~~~~-~-~~i~~~~~~~~~~~~--~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 76 ----MMFVNGSDCK-I-DFVRGPLTNFASAAS--FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp ----EEEEETTTCC-H-HHHHTHHHHHHHBCC--CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred ----EEEEcccccC-H-HHHHHHHHHHHhhcc--cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 6888886543 2 122333333332211 12345799999999999 9999999999999989999999999999
Q ss_pred cchHHHhhcceEeeccCCCHHH-------HHHHHHHHHHhcCCCCCH-HHHHHHHHHccCCHHHHHHHHHHHH
Q 036742 502 DIIESVKTHCKVIKVDPPVTHE-------IMEVLIQIARKEDFDLSM-TFAAKIATKAKQNLRKAIMALEACK 566 (629)
Q Consensus 502 ~I~~aLrSR~~~I~F~ppt~ee-------i~~iL~~i~~kegl~is~-e~L~~Ia~~s~GDiR~AInlLq~~~ 566 (629)
.++++|++||.++.|.+|+.++ +..++..++..+++.+++ ++++.|++.++||+|.+++.|+.+.
T Consensus 148 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 148 GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 9999999999999999999877 456677778889999988 9999999999999999999999886
No 6
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=9.5e-28 Score=251.27 Aligned_cols=264 Identities=20% Similarity=0.324 Sum_probs=196.7
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
..+|+++|+|.+|++++|++++++.|..++..+..+++||+||||||||++|+++++.+.+... ..
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~--------------~~ 89 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL--------------MK 89 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHH--------------HT
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcc--------------cc
Confidence 4679999999999999999999999999999998889999999999999999999999754211 01
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhc---------cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEE
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLA---------ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLIL 495 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~---------~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~IL 495 (629)
..++++++.+..+.. .+.+.+........ .......+||||||+|.+....+++|+++++++...+.||+
T Consensus 90 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il 168 (353)
T 1sxj_D 90 SRILELNASDERGIS-IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCL 168 (353)
T ss_dssp TSEEEECSSSCCCHH-HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred cceEEEccccccchH-HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEE
Confidence 126778876544432 22222222222100 11123456999999999999999999999999988999999
Q ss_pred EecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCC
Q 036742 496 CCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADD 575 (629)
Q Consensus 496 itN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~ 575 (629)
+||.+..++++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.+.||+|.+++.|+.+......-...
T Consensus 169 ~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~ 248 (353)
T 1sxj_D 169 ICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDG 248 (353)
T ss_dssp EESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSC
T ss_pred EeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999765432100000
Q ss_pred -CCCchhHHHH--------HHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 036742 576 -QPIPLGWEEV--------LIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMH 627 (629)
Q Consensus 576 -~~~~~~~ek~--------l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La 627 (629)
..+..+++++ +.++...+..+. .. ..+..+++++..+.++..|+..|.
T Consensus 249 ~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~-~~---~a~~~l~~l~~~g~~~~~i~~~l~ 305 (353)
T 1sxj_D 249 KNITSTQVEELAGVVPHDILIEIVEKVKSGD-FD---EIKKYVNTFMKSGWSAASVVNQLH 305 (353)
T ss_dssp CCCCHHHHHHHHTCCCSHHHHHHHHHHHSCC-HH---HHHHHHHHHHHTSCCCTTHHHHHH
T ss_pred ccccHHHHHHHhCCCCHHHHHHHHHHHhcCC-HH---HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 2233444333 233343333222 22 233456677777888877776654
No 7
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=3.4e-27 Score=243.43 Aligned_cols=254 Identities=20% Similarity=0.327 Sum_probs=194.8
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
..+|+++|+|.+|++++|++.+++.|..++..+..+++||+||+|+|||++|+++++.+.+... .
T Consensus 8 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~---------------~ 72 (323)
T 1sxj_B 8 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY---------------A 72 (323)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH---------------H
T ss_pred cCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc---------------c
Confidence 4689999999999999999999999999999999889999999999999999999999865421 1
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhc----cCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLA----ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~----~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
..++++++.+..+. +.+++....+. .......+||||||+|.+....+++|+++++++...+.||++||..
T Consensus 73 ~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 73 DGVLELNASDDRGI-----DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HHEEEECTTSCCSH-----HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred CCEEEecCccccCh-----HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 23677777654443 22333333332 1112336799999999999999999999999999999999999999
Q ss_pred ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCCch
Q 036742 501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPL 580 (629)
Q Consensus 501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~~~ 580 (629)
..+.++|++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.+++.|+.+..... .....
T Consensus 148 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~-----~i~~~ 222 (323)
T 1sxj_B 148 NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG-----LVNAD 222 (323)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS-----SBCHH
T ss_pred hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----CcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998764321 12223
Q ss_pred hHHHHHH----HHHHHHhcCCChHHHHHHHHHHHH-HHHcCCCHHHHHHHH
Q 036742 581 GWEEVLI----ELAAEILADPSPKRLVMVRGKIQK-LLAEFVHPKLILLVM 626 (629)
Q Consensus 581 ~~ek~l~----ei~~~il~~~s~~~L~~ir~kly~-lL~~~i~~~~i~~~L 626 (629)
++.+++. .....++.. ..+......++. ++..+.++..++..|
T Consensus 223 ~v~~~~~~~~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l 270 (323)
T 1sxj_B 223 NVFKIVDSPHPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTS 270 (323)
T ss_dssp HHHHHHTSCCHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333321 111222222 122334444555 666677777776655
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.94 E-value=3.1e-25 Score=233.94 Aligned_cols=269 Identities=16% Similarity=0.177 Sum_probs=197.7
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCcccc---c
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVL---V 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~---~ 419 (629)
..+|+++|+|.+|++++|++.+++.|..++..+..+| +||+||+|||||++|+++++.+.+..... ..+..|.. +
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3579999999999999999999999999999888776 68999999999999999999986543111 11111211 1
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.......++++++....+. +.++++...+.... ...++||||||+|.+....++.|++++++++..+.+|++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKV-----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp HTSCCSSCEEEETTCSCCS-----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred hccCCCceEEecccccCCH-----HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 1222334566665432221 12344444443332 23457999999999999999999999999989999999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPI 578 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~~ 578 (629)
....+.+++++||..+.|.+++.+++..+|..++.++++.++++++..|++.++||+|.++++|+.+...+. +..+
T Consensus 158 ~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~----~~i~ 233 (373)
T 1jr3_A 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD----GQVS 233 (373)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTT----TCBC
T ss_pred ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcC----Cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987655332 1222
Q ss_pred chhHH--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 036742 579 PLGWE--------EVLIELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVM 626 (629)
Q Consensus 579 ~~~~e--------k~l~ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~L 626 (629)
..+++ ..+.++...+..++. . .+...+..++..+.++..++..|
T Consensus 234 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~g~~~~~~l~~l 285 (373)
T 1jr3_A 234 TQAVSAMLGTLDDDQALSLVEAMVEANG-E---RVMALINEAAARGIEWEALLVEM 285 (373)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTCH-H---HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCCH-H---HHHHHHHHHHHhCcCHHHHHHHH
Confidence 22332 223445554444432 2 22334556666777776665544
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.94 E-value=2.6e-25 Score=214.63 Aligned_cols=208 Identities=26% Similarity=0.446 Sum_probs=172.2
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
..+|.++|+|..|++++|++.+++.|..++..+..++++|+||+|||||++|+++++.+.+... .
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~---------------~ 68 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW---------------R 68 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG---------------G
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcccc---------------c
Confidence 3579999999999999999999999999999888888999999999999999999998754321 1
Q ss_pred cceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccch
Q 036742 425 AHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDII 504 (629)
Q Consensus 425 ~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~ 504 (629)
..++.+++....+.. .+...+...... .......+.||||||+|.+....++.|+++++.....+.+|++||....+.
T Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 146 (226)
T 2chg_A 69 DNFIEMNASDERGID-VVRHKIKEFART-APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (226)
T ss_dssp GGEEEEETTCTTCHH-HHHHHHHHHHTS-CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred cceEEeccccccChH-HHHHHHHHHhcc-cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcC
Confidence 125677765444332 122222222111 111123456999999999999999999999999888899999999999999
Q ss_pred HHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 036742 505 ESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALN 569 (629)
Q Consensus 505 ~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~ 569 (629)
+++.+||..+.|.+++.+++..+|..++...++.++++++..|++.++||+|.+++.|+.+...+
T Consensus 147 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211 (226)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999889999999999999999999999999999887654
No 10
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.93 E-value=2.2e-25 Score=244.79 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=183.6
Q ss_pred CchhhhccCCCCCCcccccHHHH---HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEA---QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~---~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
..+|+++|+|.+|++++|+++++ ..|..++..+..+++||+||||||||++|++|++.+. ..
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~-~~-------------- 77 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN-AD-------------- 77 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT-CE--------------
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC-CC--------------
Confidence 36899999999999999999999 8899999999999999999999999999999999863 22
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC--
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED-- 499 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~-- 499 (629)
++.+++... +.. .+.+.+........ ...+.||||||||.+....++.|++.+|. ..+.||++|+.
T Consensus 78 -----f~~l~a~~~-~~~-~ir~~~~~a~~~~~---~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~ 145 (447)
T 3pvs_A 78 -----VERISAVTS-GVK-EIREAIERARQNRN---AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENP 145 (447)
T ss_dssp -----EEEEETTTC-CHH-HHHHHHHHHHHHHH---TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCG
T ss_pred -----eEEEEeccC-CHH-HHHHHHHHHHHhhh---cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCc
Confidence 466666432 211 22233333222211 23457999999999999999999999996 56778887744
Q ss_pred CccchHHHhhcceEeeccCCCHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 036742 500 DVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK-------EDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPF 572 (629)
Q Consensus 500 ~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k-------egl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~ 572 (629)
...+.++|.+||.++.|.+++.+++..+|.+++.. .++.++++++..|++.+.||+|.++++|+.+.......
T Consensus 146 ~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~ 225 (447)
T 3pvs_A 146 SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVD 225 (447)
T ss_dssp GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBC
T ss_pred ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc
Confidence 34689999999999999999999999999999886 56779999999999999999999999999877654311
Q ss_pred --CCCCCCchhHHHHHH------------------HHHHHHhcCCChHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 036742 573 --ADDQPIPLGWEEVLI------------------ELAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLVMHY 628 (629)
Q Consensus 573 --~~~~~~~~~~ek~l~------------------ei~~~il~~~s~~~L~~ir~kly~lL~~~i~~~~i~~~La~ 628 (629)
.....+..++++++. .+.+.+ .+..+. .....+..++..+.+|..|+.+|..
T Consensus 226 ~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksi-rgsd~d---aAl~~la~ml~~Gedp~~i~rrl~~ 297 (447)
T 3pvs_A 226 DSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSV-RGSAPD---AALYWYARIITAGGDPLYVARRCLA 297 (447)
T ss_dssp TTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHH-HTTCHH---HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHH-hCCCHH---HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 111122233333332 222221 222222 2345677899999999999998853
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.92 E-value=1.4e-23 Score=204.35 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=170.2
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCC-eEEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccc---cc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCP-HILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQV---LV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p-~ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v---~~ 419 (629)
..+|.++|+|..|++++|++.+++.|..++..+..+ .++|+||+|+|||++|+++++.+....... ..+..+. .+
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 467999999999999999999999999999987765 589999999999999999999885432110 0000010 01
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
.......++.++....... +.++++...+.... ...+.||||||+|.+....++.|++.++.....+.+|++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKV-----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp HTTCCSSEEEEETTCGGGH-----HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred hccCCcceEEecCcccccH-----HHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 1111123445544322221 23344444333222 23456999999999999999999999998888899999999
Q ss_pred CCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 499 DDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 499 ~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
....+.+++.+||..+.|++++.+++.+++..++.+.++.++++++..|++.++|++|.++++++.+...
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~ 234 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 234 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 9989999999999999999999999999999999999999999999999999999999999999987654
No 12
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.92 E-value=2.9e-24 Score=239.61 Aligned_cols=205 Identities=21% Similarity=0.275 Sum_probs=161.0
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHc-----------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVD-----------------GNCPHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
...++|++||+|.+|++|+|++.+++.|.+|+.. +..+++||+||||||||++|+++|+++ +
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~ 102 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-G 102 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-T
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-C
Confidence 3467899999999999999999999999999974 134689999999999999999999997 3
Q ss_pred CCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHHHHH------hcc-----CcCCCCeEEEEEccchhhH
Q 036742 406 DACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDN------LAI-----TPEVSNAMIVIYEVDKAAE 474 (629)
Q Consensus 406 ~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~------~~~-----~~~~~~kVIIIDEID~Ls~ 474 (629)
.. +++++++...... .+...+.+.... +.. .....+.||||||+|.+..
T Consensus 103 ~~-------------------~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 103 YD-------------------ILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp CE-------------------EEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred CC-------------------EEEEeCCCcchHH-HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch
Confidence 32 6888887655432 222222211110 000 0123456999999999965
Q ss_pred HH---HHHHHHHHhccCCCcEEEEEecCCc-cchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 036742 475 HI---QYLIKWIMDGYTDSCKLILCCEDDV-DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATK 550 (629)
Q Consensus 475 ~~---q~aLlrilEe~~~~~~~ILitN~~~-~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~ 550 (629)
.. .+.|+.+++. ...+||++||... ..++++++||..+.|.+|+.+++.++|..++.++++.++++++..|++.
T Consensus 163 ~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~ 240 (516)
T 1sxj_A 163 GDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240 (516)
T ss_dssp TSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 43 4778888875 4677999998865 3567899999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCC
Q 036742 551 AKQNLRKAIMALEACKALNY 570 (629)
Q Consensus 551 s~GDiR~AInlLq~~~~~~~ 570 (629)
+.||+|.++++|+.++..+.
T Consensus 241 s~GdiR~~i~~L~~~~~~~~ 260 (516)
T 1sxj_A 241 TRGDIRQVINLLSTISTTTK 260 (516)
T ss_dssp TTTCHHHHHHHHTHHHHHSS
T ss_pred cCCcHHHHHHHHHHHHhcCC
Confidence 99999999999998776443
No 13
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.90 E-value=2.8e-22 Score=209.80 Aligned_cols=192 Identities=18% Similarity=0.229 Sum_probs=153.7
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVD-----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...|.++|+|.+|++|+|++.+++.|..++.. ...+++||+||||||||++|+++|+.+.+.
T Consensus 16 ~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~------------- 82 (338)
T 3pfi_A 16 DETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN------------- 82 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-------------
T ss_pred hhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-------------
Confidence 45799999999999999999999999999873 345689999999999999999999986322
Q ss_pred cccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCC----------
Q 036742 420 PVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTD---------- 489 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~---------- 489 (629)
++.+++...... ..+...... ...+.+|||||||.+....++.|++.++....
T Consensus 83 -------~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 145 (338)
T 3pfi_A 83 -------IKTTAAPMIEKS-----GDLAAILTN-----LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAA 145 (338)
T ss_dssp -------EEEEEGGGCCSH-----HHHHHHHHT-----CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------C
T ss_pred -------eEEecchhccch-----hHHHHHHHh-----ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccc
Confidence 466666433222 112222221 23456999999999999999999999986531
Q ss_pred --------CcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742 490 --------SCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM 560 (629)
Q Consensus 490 --------~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn 560 (629)
.+.+|++||....+.++|++|| ..+.|.+|+.+++..++...+...++.++++++..|+..+.|++|.+.+
T Consensus 146 ~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 146 QTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp CCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHH
T ss_pred cceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 2678999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 036742 561 ALEACK 566 (629)
Q Consensus 561 lLq~~~ 566 (629)
+|+.+.
T Consensus 226 ~l~~~~ 231 (338)
T 3pfi_A 226 LLKRVR 231 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 14
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.89 E-value=3.7e-22 Score=210.79 Aligned_cols=221 Identities=16% Similarity=0.181 Sum_probs=157.1
Q ss_pred hhhccCCCC-CCcccccHHHHHH---HHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 348 WADKHQPSS-LNGFICHRHEAQL---LKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 348 W~eKyrP~t-fddIiG~e~~~~~---Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
+.++++|.. |++|+|++.+++. +..++..+..+ ++||+||||||||++|+++|+.+.+...
T Consensus 33 l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~------------- 99 (368)
T 3uk6_A 33 LDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP------------- 99 (368)
T ss_dssp BCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC-------------
T ss_pred cccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC-------------
Confidence 558899998 9999999998766 55566676664 8999999999999999999999853211
Q ss_pred cCCcceEEEeccc--------------------------------------------------chh----hHHHHHHHHH
Q 036742 422 ASSAHHVELNVNL--------------------------------------------------QAN----AKYALMGLVK 447 (629)
Q Consensus 422 ~sS~~vleInas~--------------------------------------------------~~~----~k~~l~~~lr 447 (629)
++.+++.. ..+ ....+.+.+.
T Consensus 100 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 174 (368)
T 3uk6_A 100 -----FTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQIN 174 (368)
T ss_dssp -----EEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHH
T ss_pred -----cccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHH
Confidence 11111100 000 0011122222
Q ss_pred HHHHHhccCc--CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec------------CCccchHHHhhcceE
Q 036742 448 EIRDNLAITP--EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE------------DDVDIIESVKTHCKV 513 (629)
Q Consensus 448 ei~~~~~~~~--~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN------------~~~~I~~aLrSR~~~ 513 (629)
.....+.... ...++||||||+|.|..+.++.|+++++++...+ +|++++ .+..++++|++||..
T Consensus 175 ~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~ 253 (368)
T 3uk6_A 175 AKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI 253 (368)
T ss_dssp HHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEE
T ss_pred HHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccE
Confidence 2222111111 1123599999999999999999999999876553 444554 255688999999999
Q ss_pred eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Q 036742 514 IKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK-QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLI 587 (629)
Q Consensus 514 I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~-GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ 587 (629)
+.|++|+.+++..+|..++..+++.++++++..|++.+. |++|.++++|+.+...+...........++++++.
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999866544322233344455555543
No 15
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.89 E-value=3.1e-22 Score=211.09 Aligned_cols=193 Identities=12% Similarity=0.127 Sum_probs=155.7
Q ss_pred ccHHHHHHHHHHHHcCCCCe-EEEEcCCCCcHHHHHHHHHHHHhCCCCCC-CCCCccccc---cccCCcceEEEecc---
Q 036742 362 CHRHEAQLLKELVVDGNCPH-ILIKGQSGSGKRALAMALLHEIYGDACWN-EKWPTQVLV---PVASSAHHVELNVN--- 433 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~-ILL~GPPGtGKTtLAraLAkeL~g~~~~~-~~~~~~v~~---~i~sS~~vleInas--- 433 (629)
.++++.+.|...++.|+.+| +||+||+|+|||++|+++|+.+.|..... ..+..|..| .......+.++++.
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 85 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC
Confidence 36888899999999999887 89999999999999999999997754211 112222222 22234557777764
Q ss_pred cchhhHHHHHHHHHHHHHHhccCc-CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcce
Q 036742 434 LQANAKYALMGLVKEIRDNLAITP-EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCK 512 (629)
Q Consensus 434 ~~~~~k~~l~~~lrei~~~~~~~~-~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~ 512 (629)
...++ +.++++.+.+...+ .+..+||||||+|.|+.+++++|++++|+++.++.||++|+.+..++++|+|||.
T Consensus 86 ~~~~i-----~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 86 NTLGV-----DAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR 160 (334)
T ss_dssp SSBCH-----HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred CCCCH-----HHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence 22332 45566666665544 3456899999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742 513 VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564 (629)
Q Consensus 513 ~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~ 564 (629)
.+.|.+++.+++.++|..++ .++++++..+++.++||+|.|+++|+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~ 207 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQG 207 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSS
T ss_pred eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 99999999999999998764 678999999999999999999998754
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=4.4e-21 Score=198.80 Aligned_cols=194 Identities=16% Similarity=0.168 Sum_probs=153.9
Q ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD-----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
+|.++|+|.+|++++|++.+++.|..++.. ....++||+||||||||++|+++++.+...
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~--------------- 65 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--------------- 65 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---------------
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---------------
Confidence 467899999999999999999988888862 344689999999999999999999987322
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------------- 488 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------------- 488 (629)
++.+++....... ++. ..+.. ....+.+|||||+|.+....++.|+++++...
T Consensus 66 -----~~~~~~~~~~~~~----~l~----~~l~~-~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~ 131 (324)
T 1hqc_A 66 -----LRVTSGPAIEKPG----DLA----AILAN-SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAART 131 (324)
T ss_dssp -----EEEECTTTCCSHH----HHH----HHHTT-TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCC
T ss_pred -----EEEEeccccCChH----HHH----HHHHH-hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccc
Confidence 4555554322211 111 11111 11245699999999999999999999998643
Q ss_pred -----CCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 489 -----DSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 489 -----~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
..+.+|++||....+.++|.+|| .++.|.+|+.+++..+|...+...++.++++++..|+..+.|++|.+.+++
T Consensus 132 ~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 132 IRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp EEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred cccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 34678999999999999999999 699999999999999999999988999999999999999999999999999
Q ss_pred HHHHhcC
Q 036742 563 EACKALN 569 (629)
Q Consensus 563 q~~~~~~ 569 (629)
+.+....
T Consensus 212 ~~~~~~a 218 (324)
T 1hqc_A 212 RRVRDFA 218 (324)
T ss_dssp HHHTTTS
T ss_pred HHHHHHH
Confidence 8875443
No 17
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.87 E-value=2.1e-21 Score=203.18 Aligned_cols=173 Identities=14% Similarity=0.216 Sum_probs=140.7
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc-chhhHH
Q 036742 362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL-QANAKY 440 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~-~~~~k~ 440 (629)
||+++++.|+..++.+..+++|||||||+|||++|+++|+.+. . + . .....+++++++. ..++
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~-~-~-----------~-~~~~d~~~l~~~~~~~~i-- 64 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVE-K-F-----------P-PKASDVLEIDPEGENIGI-- 64 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH-T-S-----------C-CCTTTEEEECCSSSCBCH--
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc-h-h-----------h-ccCCCEEEEcCCcCCCCH--
Confidence 7889999999999998877899999999999999999998742 1 1 0 0233478888753 4443
Q ss_pred HHHHHHHHHHHHhccCcC-CCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCccchHHHhhcceEeeccCC
Q 036742 441 ALMGLVKEIRDNLAITPE-VSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPP 519 (629)
Q Consensus 441 ~l~~~lrei~~~~~~~~~-~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I~~aLrSR~~~I~F~pp 519 (629)
+.++++...+...+. +..+||||||+|.|+..++++|++++|+++..+.||++|+.+.++.++|+|| ++.|.++
T Consensus 65 ---d~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l 139 (305)
T 2gno_A 65 ---DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVN 139 (305)
T ss_dssp ---HHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECC
T ss_pred ---HHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCC
Confidence 456666666655443 4568999999999999999999999999999999999999999999999999 9999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742 520 VTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEA 564 (629)
Q Consensus 520 t~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~ 564 (629)
+.+++.++|..++ + ++++.+ ..+.||+|.|+++|+.
T Consensus 140 ~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 140 VPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp CCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence 9999999999887 2 455554 5579999999999864
No 18
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=4.4e-21 Score=210.67 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=104.4
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC-------------CccchHHHhhcceEeeccCCCHHHHHHHH
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED-------------DVDIIESVKTHCKVIKVDPPVTHEIMEVL 528 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~-------------~~~I~~aLrSR~~~I~F~ppt~eei~~iL 528 (629)
+|+||||+|.|+.+++++|++++|+++.. .|||+||. +..++++|+|||..+.|.+|+.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 59999999999999999999999999887 57778843 56689999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHH
Q 036742 529 IQIARKEDFDLSMTFAAKIATKA-KQNLRKAIMALEACKALNYPFADDQPIPLGWEEV 585 (629)
Q Consensus 529 ~~i~~kegl~is~e~L~~Ia~~s-~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~ 585 (629)
..++..+++.++++++..|+..+ .|++|.|+++|+.+...++....+..++.++.++
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 99999999999999999999999 9999999999998755443323344444444433
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=206.01 Aligned_cols=199 Identities=18% Similarity=0.174 Sum_probs=150.0
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWN 410 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~ 410 (629)
....-|+++|+|.+|++|+|++.+++.|.+++. .....++||+||||||||++|++||.++ +..
T Consensus 100 ~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-~~~--- 175 (389)
T 3vfd_A 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-NAT--- 175 (389)
T ss_dssp TGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-TCE---
T ss_pred HHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-cCc---
Confidence 344569999999999999999999999998883 1224589999999999999999999986 332
Q ss_pred CCCCccccccccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-----------hHHHHH
Q 036742 411 EKWPTQVLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-----------AEHIQY 478 (629)
Q Consensus 411 ~~~~~~v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-----------s~~~q~ 478 (629)
++++++....+.. ......++.+.... ......||||||||.| ....++
T Consensus 176 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a---~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~ 236 (389)
T 3vfd_A 176 ----------------FFNISAASLTSKYVGEGEKLVRALFAVA---RELQPSIIFIDQVDSLLCERREGEHDASRRLKT 236 (389)
T ss_dssp ----------------EEEECSCCC-------CHHHHHHHHHHH---HHSSSEEEEEETGGGGC--------CTHHHHHH
T ss_pred ----------------EEEeeHHHhhccccchHHHHHHHHHHHH---HhcCCeEEEEECchhhcccCCCccchHHHHHHH
Confidence 5667664322110 00011222222211 1223469999999998 345566
Q ss_pred HHHHHHhcc----CCCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 479 LIKWIMDGY----TDSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 479 aLlrilEe~----~~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
.|+..++.. ...+.||++||.++.+++++++||. .+.|..|+.+++..+|..++.+.++.++++.+..|+..+.|
T Consensus 237 ~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g 316 (389)
T 3vfd_A 237 EFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDG 316 (389)
T ss_dssp HHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTT
T ss_pred HHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 777777643 3457788899999999999999995 79999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH
Q 036742 554 NLRKAIMALEA 564 (629)
Q Consensus 554 DiR~AInlLq~ 564 (629)
+.+..|..|..
T Consensus 317 ~~~~~l~~L~~ 327 (389)
T 3vfd_A 317 YSGSDLTALAK 327 (389)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 98887766643
No 20
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.6e-20 Score=201.11 Aligned_cols=213 Identities=16% Similarity=0.177 Sum_probs=144.5
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH-----------cCC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DGN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
++-...+|+||+|.+++++.|++++. -|. ..++|||||||||||++|+++|+++ +..
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-~~~--------- 209 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-DCK--------- 209 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-TCE---------
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-CCC---------
Confidence 33445678999999999999998884 122 3489999999999999999999997 333
Q ss_pred ccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHH
Q 036742 417 VLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQY 478 (629)
Q Consensus 417 v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~ 478 (629)
++.++++. +.|.. ...+++ .|..+....++||||||+|.+.. ...+
T Consensus 210 ----------f~~v~~s~l~sk~vGes---e~~vr~---lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~ 273 (405)
T 4b4t_J 210 ----------FIRVSGAELVQKYIGEG---SRMVRE---LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTML 273 (405)
T ss_dssp ----------EEEEEGGGGSCSSTTHH---HHHHHH---HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHH
T ss_pred ----------ceEEEhHHhhccccchH---HHHHHH---HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHH
Confidence 45666532 22221 122333 33333344568999999999831 2345
Q ss_pred HHHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 479 LIKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 479 aLlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
.|+..|+.+. ..+.||++||.++.|+++|++ |+ ..|.|+.|+.++..++|+.++.+..+. ++..+..|++.+.|
T Consensus 274 ~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G 352 (405)
T 4b4t_J 274 ELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNG 352 (405)
T ss_dssp HHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCS
T ss_pred HHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCC
Confidence 5666666443 456788899999999999998 77 589999999999999998887664432 22248889998876
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHH
Q 036742 554 ----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAE 592 (629)
Q Consensus 554 ----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~ 592 (629)
|++.+++-.-..+... ........+++.++.++...
T Consensus 353 ~SGADi~~l~~eA~~~Air~---~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 353 CSGADVKGVCTEAGMYALRE---RRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHT---TCSBCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHHHhCc
Confidence 5554443322222221 12223446777777776654
No 21
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.83 E-value=6.4e-20 Score=192.17 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=140.0
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHH----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVV----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW 413 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~ 413 (629)
..|..++.+.+|++|+|++.+++.|++++. .+ ...++||+||||||||++|++||+++ +..
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-~~~------ 78 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-NST------ 78 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-TCE------
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-CCC------
Confidence 347789999999999999999999999883 12 23479999999999999999999997 332
Q ss_pred CccccccccCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHH
Q 036742 414 PTQVLVPVASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQY 478 (629)
Q Consensus 414 ~~~v~~~i~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~ 478 (629)
++.+++... .+. ....++.+.... ....++||||||||.|.. ..++
T Consensus 79 -------------~~~v~~~~l~~~~~g~---~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 139 (322)
T 3eie_A 79 -------------FFSVSSSDLVSKWMGE---SEKLVKQLFAMA---RENKPSIIFIDQVDALTGTRGEGESEASRRIKT 139 (322)
T ss_dssp -------------EEEEEHHHHHTTTGGG---HHHHHHHHHHHH---HHTSSEEEEEECGGGGSCC------CCTHHHHH
T ss_pred -------------EEEEchHHHhhcccch---HHHHHHHHHHHH---HhcCCeEEEechhhhhhccCCCCcchHHHHHHH
Confidence 566766421 111 112222222221 123457999999999843 3466
Q ss_pred HHHHHHhcc---CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 479 LIKWIMDGY---TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 479 aLlrilEe~---~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
.|+..++.. ...+.||++||.++.++++|++|| ..+.|+.|+.++..++|+.++.+.+..++++.+..|++.+.|
T Consensus 140 ~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g 218 (322)
T 3eie_A 140 ELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG 218 (322)
T ss_dssp HHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTT
T ss_pred HHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC
Confidence 777777643 456778889999999999999999 578899999999999999999888888899999999999887
No 22
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.83 E-value=2.5e-19 Score=188.83 Aligned_cols=194 Identities=16% Similarity=0.213 Sum_probs=146.3
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcC-----CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDG-----NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g-----~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
...+.|+++++|.+|++++|++.+++.|..++..+ ...+++|+|||||||||+|++||+++.+.
T Consensus 10 ~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~----------- 78 (334)
T 1in4_A 10 TVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN----------- 78 (334)
T ss_dssp -------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----------
Confidence 34567899999999999999999999998888643 34689999999999999999999997432
Q ss_pred cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC---------
Q 036742 418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT--------- 488 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~--------- 488 (629)
+...+........ .+....... ....|+||||++.+....++.|+..++.+.
T Consensus 79 ---------~~~~sg~~~~~~~-----~l~~~~~~~-----~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~ 139 (334)
T 1in4_A 79 ---------IHVTSGPVLVKQG-----DMAAILTSL-----ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGP 139 (334)
T ss_dssp ---------EEEEETTTCCSHH-----HHHHHHHHC-----CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC------
T ss_pred ---------EEEEechHhcCHH-----HHHHHHHHc-----cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCc
Confidence 1112221111111 111111111 234699999999998888888887776542
Q ss_pred ---------CCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHH
Q 036742 489 ---------DSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKA 558 (629)
Q Consensus 489 ---------~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~A 558 (629)
..+.++.+++.+..+..++++||. .+.|.+++.+++.++|.+++...++.++++++..|++.+.|++|.+
T Consensus 140 ~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 140 SAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp ---------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHH
T ss_pred ccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHH
Confidence 124566788888899999999995 6889999999999999999998899999999999999999999999
Q ss_pred HHHHHHHH
Q 036742 559 IMALEACK 566 (629)
Q Consensus 559 InlLq~~~ 566 (629)
+++|+.+.
T Consensus 220 ~~ll~~~~ 227 (334)
T 1in4_A 220 IRLTKRVR 227 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998654
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=5.4e-20 Score=195.89 Aligned_cols=188 Identities=15% Similarity=0.112 Sum_probs=132.5
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHH----------c--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCC
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVV----------D--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWN 410 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~----------~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~ 410 (629)
.+...|..++.+.+|+||+|++.+++.|++++. . ....++||+||||||||++|++||+++. ..
T Consensus 36 ~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~--- 111 (355)
T 2qp9_X 36 ALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-ST--- 111 (355)
T ss_dssp -----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT-CE---
T ss_pred HHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-CC---
Confidence 344567788999999999999999999998873 1 1234799999999999999999999973 32
Q ss_pred CCCCccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHH
Q 036742 411 EKWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQY 478 (629)
Q Consensus 411 ~~~~~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~ 478 (629)
++.+++...... .......++.+.... ....++||||||||.|.. ..++
T Consensus 112 ----------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 172 (355)
T 2qp9_X 112 ----------------FFSVSSSDLVSKWMGESEKLVKQLFAMA---RENKPSIIFIDQVDALTGTRGEGESEASRRIKT 172 (355)
T ss_dssp ----------------EEEEEHHHHHSCC---CHHHHHHHHHHH---HHTSSEEEEEECGGGGTC------CTHHHHHHH
T ss_pred ----------------EEEeeHHHHhhhhcchHHHHHHHHHHHH---HHcCCeEEEEechHhhcccCCCCcchHHHHHHH
Confidence 455665321100 000112222222211 123457999999999852 3466
Q ss_pred HHHHHHhcc---CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 479 LIKWIMDGY---TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 479 aLlrilEe~---~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
.|+..++.. ...+.||++||.++.++++|++|| ..+.|+.|+.+++..+|..++...++.+++..+..|++.+.|
T Consensus 173 ~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G 251 (355)
T 2qp9_X 173 ELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251 (355)
T ss_dssp HHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTT
T ss_pred HHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCC
Confidence 777777643 356778889999999999999999 678999999999999999999888777899999999999988
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.83 E-value=6.6e-20 Score=188.41 Aligned_cols=191 Identities=17% Similarity=0.175 Sum_probs=144.8
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW 413 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~ 413 (629)
..|.++|++.+|++|+|++.+++.|.+++.. ....++||+||||||||++|+++|+++. ..
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~-~~------ 81 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS-AT------ 81 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT-CE------
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC-CC------
Confidence 4588999999999999999999999988842 1345899999999999999999999863 22
Q ss_pred CccccccccCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHH
Q 036742 414 PTQVLVPVASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQY 478 (629)
Q Consensus 414 ~~~v~~~i~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~ 478 (629)
++.+++... .+.. ...++.+..... ...++||||||+|.+. ...++
T Consensus 82 -------------~~~i~~~~l~~~~~~~~---~~~~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 142 (297)
T 3b9p_A 82 -------------FLNISAASLTSKYVGDG---EKLVRALFAVAR---HMQPSIIFIDEVDSLLSERSSSEHEASRRLKT 142 (297)
T ss_dssp -------------EEEEESTTTSSSSCSCH---HHHHHHHHHHHH---HTCSEEEEEETGGGTSBCC-----CCSHHHHH
T ss_pred -------------eEEeeHHHHhhcccchH---HHHHHHHHHHHH---HcCCcEEEeccHHHhccccccCcchHHHHHHH
Confidence 455555321 1111 122222222111 2345799999999983 34566
Q ss_pred HHHHHHhccC-----CCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc
Q 036742 479 LIKWIMDGYT-----DSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK 552 (629)
Q Consensus 479 aLlrilEe~~-----~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~ 552 (629)
.|+..++... ..+.||++||.++.+++++++|| ..+.|+.|+.++...++..++.+.+..++++.+..|+..+.
T Consensus 143 ~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~ 222 (297)
T 3b9p_A 143 EFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITD 222 (297)
T ss_dssp HHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTT
T ss_pred HHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 6777777654 34678889999999999999999 57888999999999999999988888899999999999999
Q ss_pred CCHHHHHHHH
Q 036742 553 QNLRKAIMAL 562 (629)
Q Consensus 553 GDiR~AInlL 562 (629)
|..+..+..|
T Consensus 223 g~~~~~l~~l 232 (297)
T 3b9p_A 223 GYSGSDLTAL 232 (297)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9888766443
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.83 E-value=1.7e-19 Score=177.29 Aligned_cols=194 Identities=13% Similarity=0.128 Sum_probs=150.2
Q ss_pred chhhhccCC-CCCCcccc---cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 346 PFWADKHQP-SSLNGFIC---HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 346 ~lW~eKyrP-~tfddIiG---~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
.+|..+++| .+|++++| ++.+++.|..++..+..++++|+||||||||++|+++++++.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~------------- 81 (242)
T 3bos_A 15 LSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELER------------- 81 (242)
T ss_dssp CEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------
T ss_pred cCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-------------
Confidence 468899998 89999996 4688899999998777779999999999999999999998754321
Q ss_pred cCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHH--HHHHHHHHhccCC-Cc-EEEEEe
Q 036742 422 ASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHI--QYLIKWIMDGYTD-SC-KLILCC 497 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~--q~aLlrilEe~~~-~~-~~ILit 497 (629)
.++++++...... +.+... ......||||||+|.+.... ++.|..+++.... .. .+|++|
T Consensus 82 ----~~~~~~~~~~~~~-------~~~~~~-----~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~ 145 (242)
T 3bos_A 82 ----RSFYIPLGIHASI-------STALLE-----GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSA 145 (242)
T ss_dssp ----CEEEEEGGGGGGS-------CGGGGT-----TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred ----eEEEEEHHHHHHH-------HHHHHH-----hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEc
Confidence 1556665432110 000000 11234699999999996544 7777777664332 22 588888
Q ss_pred cCCc----cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 498 EDDV----DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 498 N~~~----~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
+... .+++++.+|| ..+.|.+|+.+++.++|..++...++.+++++++.|++.+.||+|.++++|+.+...
T Consensus 146 ~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 146 SASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp SSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 8654 3569999999 899999999999999999999999999999999999999999999999999876543
No 26
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8e-20 Score=198.23 Aligned_cols=213 Identities=15% Similarity=0.151 Sum_probs=142.7
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
++-...+|+||+|.+++++.|++.+. .| ...++|||||||||||++|++||.++ +..
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~--------- 243 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-SAT--------- 243 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-TCE---------
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-CCC---------
Confidence 44455678999999999999998874 12 23489999999999999999999997 333
Q ss_pred ccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHH
Q 036742 417 VLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQY 478 (629)
Q Consensus 417 v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~ 478 (629)
++.++.+. +.+.. ...++.+ |.......++||||||+|.+.. ....
T Consensus 244 ----------fi~v~~s~l~sk~vGes---ek~ir~l---F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~ 307 (437)
T 4b4t_I 244 ----------FLRIVGSELIQKYLGDG---PRLCRQI---FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML 307 (437)
T ss_dssp ----------EEEEESGGGCCSSSSHH---HHHHHHH---HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHH
T ss_pred ----------EEEEEHHHhhhccCchH---HHHHHHH---HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHH
Confidence 45555532 22221 1223332 2223334568999999998821 2334
Q ss_pred HHHHHHhcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcc
Q 036742 479 LIKWIMDGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAK 552 (629)
Q Consensus 479 aLlrilEe~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~ 552 (629)
.|+..++.. ..++.||++||.++.|+++|++ |+ ..|.|+.|+.++..++|+.++.+..+ +++ .++.||+.+.
T Consensus 308 ~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~~dvdl~~LA~~T~ 385 (437)
T 4b4t_I 308 ELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--SEDVNLETLVTTKD 385 (437)
T ss_dssp HHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--CSCCCHHHHHHHCC
T ss_pred HHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCC
Confidence 455555543 3556789999999999999998 77 46999999999999999888766443 333 4788898877
Q ss_pred C----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 036742 553 Q----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAEI 593 (629)
Q Consensus 553 G----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~i 593 (629)
| ||+.+++..-..+.. .........++++++..+....
T Consensus 386 GfSGADI~~l~~eA~~~Air---~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 386 DLSGADIQAMCTEAGLLALR---ERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp SCCHHHHHHHHHHHHHHHHH---TTCSCBCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH---cCCCccCHHHHHHHHHHHhCCC
Confidence 6 555444332222222 1222344467777777766543
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=1.4e-19 Score=186.47 Aligned_cols=191 Identities=14% Similarity=0.155 Sum_probs=145.9
Q ss_pred CcccccHHHHHHHHHHHH---------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 358 NGFICHRHEAQLLKELVV---------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~---------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.+|+|++.+++.|.+++. .....++||+||||||||++|+++|+.+..... .
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~-------------~ 97 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY-------------V 97 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS-------------S
T ss_pred HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCC-------------c
Confidence 479999999999988775 223347999999999999999999999854322 1
Q ss_pred CCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh---------hHHHHHHHHHHHhccCCCcE
Q 036742 423 SSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA---------AEHIQYLIKWIMDGYTDSCK 492 (629)
Q Consensus 423 sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L---------s~~~q~aLlrilEe~~~~~~ 492 (629)
....++++++....+. .......+....... .+.||||||+|.+ ....++.|+.+++.....+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 98 RKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp SSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred CCCcEEEEcHHHhhhhcccccHHHHHHHHHhc------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 2233667766422110 000011222222222 2359999999988 78899999999999888899
Q ss_pred EEEEecCCc-----cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc--------cCCHHHH
Q 036742 493 LILCCEDDV-----DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKA--------KQNLRKA 558 (629)
Q Consensus 493 ~ILitN~~~-----~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s--------~GDiR~A 558 (629)
||+++|... .++++|++|| ..+.|++|+.+++..++..++.+.++.++++++..++..+ .||+|.+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l 251 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSI 251 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHH
Confidence 999997643 2468999999 8999999999999999999999999999999999999874 4999999
Q ss_pred HHHHHHHHh
Q 036742 559 IMALEACKA 567 (629)
Q Consensus 559 InlLq~~~~ 567 (629)
.++|+.+..
T Consensus 252 ~~~l~~a~~ 260 (309)
T 3syl_A 252 RNALDRARL 260 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=189.90 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=141.6
Q ss_pred hhhccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCc
Q 036742 348 WADKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPT 415 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~ 415 (629)
+.++++|.+|++|+|++.+++.|++++.. ....++||+||||||||++|++||+++ +..
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-~~~-------- 144 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-GAT-------- 144 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-TCE--------
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-CCe--------
Confidence 45889999999999999999999988852 234589999999999999999999986 322
Q ss_pred cccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHH
Q 036742 416 QVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWI 483 (629)
Q Consensus 416 ~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlri 483 (629)
++.+++...... .......++.+.... ....+.||||||||.|. ...++.|+..
T Consensus 145 -----------~~~i~~~~l~~~~~g~~~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~ 210 (357)
T 3d8b_A 145 -----------FFSISASSLTSKWVGEGEKMVRALFAVA---RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQ 210 (357)
T ss_dssp -----------EEEEEGGGGCCSSTTHHHHHHHHHHHHH---HHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHH
T ss_pred -----------EEEEehHHhhccccchHHHHHHHHHHHH---HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHH
Confidence 566666432110 001112223322221 12345799999999982 2345666666
Q ss_pred Hhcc----CCCcEEEEEecCCccchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHH
Q 036742 484 MDGY----TDSCKLILCCEDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKA 558 (629)
Q Consensus 484 lEe~----~~~~~~ILitN~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~A 558 (629)
++.. ...+.||++||.++.+++++++||. .+.|..|+.++...+|..++...++.++++.+..|+..+.|.....
T Consensus 211 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 211 LDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp HHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred HhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH
Confidence 6642 3567788899999999999999996 7889999999999999999998888899999999999999844433
Q ss_pred HHH
Q 036742 559 IMA 561 (629)
Q Consensus 559 Inl 561 (629)
|..
T Consensus 291 l~~ 293 (357)
T 3d8b_A 291 MTQ 293 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 29
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.82 E-value=5.8e-19 Score=186.63 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=158.9
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHH----cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVV----DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP 420 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~----~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~ 420 (629)
...|..+|.| ++++|++..++.|..++. .+..++++|+||||||||++|+++++++...... .
T Consensus 10 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~----------~ 76 (384)
T 2qby_B 10 KVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKE----------D 76 (384)
T ss_dssp TTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHH----------S
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhh----------h
Confidence 4568889999 889999999888887775 3345589999999999999999999987321000 0
Q ss_pred ccC-CcceEEEecccch-hhHHHHHHHHHHH---------------HHHhccCcCCCCeEEEEEccchhhHH-HHHH-HH
Q 036742 421 VAS-SAHHVELNVNLQA-NAKYALMGLVKEI---------------RDNLAITPEVSNAMIVIYEVDKAAEH-IQYL-IK 481 (629)
Q Consensus 421 i~s-S~~vleInas~~~-~~k~~l~~~lrei---------------~~~~~~~~~~~~kVIIIDEID~Ls~~-~q~a-Ll 481 (629)
... ...++++++.... ....++..++..+ ...+.......+.||||||+|.+... .++. +.
T Consensus 77 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~ 156 (384)
T 2qby_B 77 EEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLY 156 (384)
T ss_dssp SSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHH
T ss_pred cCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHH
Confidence 000 1236788875433 2222222222222 11111001112239999999999764 2556 66
Q ss_pred HHHhccCCCcEEEEEecCC---ccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHcc---
Q 036742 482 WIMDGYTDSCKLILCCEDD---VDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIATKAK--- 552 (629)
Q Consensus 482 rilEe~~~~~~~ILitN~~---~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~~s~--- 552 (629)
.+++.. ..+.||+++|.. ..+.+++++|+ ..+.|++++.+++.++|...+.. .+..++++++..|++.+.
T Consensus 157 ~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 235 (384)
T 2qby_B 157 QLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEH 235 (384)
T ss_dssp HHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTC
T ss_pred HHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhcc
Confidence 666655 778899999987 56889999995 79999999999999999998864 346788999999999998
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742 553 QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL 589 (629)
Q Consensus 553 GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei 589 (629)
||+|.++++|+.+...+. ........++.+++.++
T Consensus 236 G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 236 GDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 999999999998766554 22334445666555444
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=188.62 Aligned_cols=182 Identities=18% Similarity=0.147 Sum_probs=135.6
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHc---------C---CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVD---------G---NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~---------g---~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
..+.+.+|+||+|++++++.|++++.. + ...++||+||||||||++|+++|+++.+..
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---------- 73 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST---------- 73 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCE----------
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCc----------
Confidence 456678899999999999999988841 1 234899999999999999999999973332
Q ss_pred cccccCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHH
Q 036742 418 LVPVASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKW 482 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlr 482 (629)
++.+++... .+.. ...++.+.... ....+.||||||+|.+. ....+.|+.
T Consensus 74 ---------~~~i~~~~l~~~~~g~~---~~~~~~lf~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 138 (322)
T 1xwi_A 74 ---------FFSISSSDLVSKWLGES---EKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLV 138 (322)
T ss_dssp ---------EEEEECCSSCCSSCCSC---HHHHHHHHHHH---HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHH
T ss_pred ---------EEEEEhHHHHhhhhhHH---HHHHHHHHHHH---HhcCCcEEEeecHHHhccccccccchHHHHHHHHHHH
Confidence 345554311 1111 12222222211 12345799999999982 245566777
Q ss_pred HHhcc---CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Q 036742 483 IMDGY---TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLR 556 (629)
Q Consensus 483 ilEe~---~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR 556 (629)
.++.. ...+.||++||.++.+++++++|| ..+.|+.|+.++...+|..++.+.+..+++..+..|++.+.|...
T Consensus 139 ~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg 216 (322)
T 1xwi_A 139 QMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSG 216 (322)
T ss_dssp HHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCH
T ss_pred HHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH
Confidence 77653 356778889999999999999999 679999999999999999999888778899999999999988533
No 31
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.3e-19 Score=196.26 Aligned_cols=213 Identities=11% Similarity=0.125 Sum_probs=141.5
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
+.-...+|+||+|.+++++.|++++. -| ...++|||||||||||++|++||+++. ..
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~-~~--------- 270 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD-AT--------- 270 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT-CE---------
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC-CC---------
Confidence 34445788999999999999998763 12 345899999999999999999999973 33
Q ss_pred ccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHH
Q 036742 417 VLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQY 478 (629)
Q Consensus 417 v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~ 478 (629)
++.++++. ..|.. ...++. .|.......++||||||+|.+.. ....
T Consensus 271 ----------fi~vs~s~L~sk~vGes---ek~ir~---lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~ 334 (467)
T 4b4t_H 271 ----------FIRVIGSELVQKYVGEG---ARMVRE---LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTML 334 (467)
T ss_dssp ----------EEEEEGGGGCCCSSSHH---HHHHHH---HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHH
T ss_pred ----------eEEEEhHHhhcccCCHH---HHHHHH---HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHH
Confidence 45555532 22221 122333 22233334568999999998821 2334
Q ss_pred HHHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 479 LIKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 479 aLlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
.|+..|+... ..+.||++||.++.|+++|++ || ..|+|+.|+.++..++|+.++.+..+. .+-.+..|++.+.|
T Consensus 335 ~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~G 413 (467)
T 4b4t_H 335 ELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPN 413 (467)
T ss_dssp HHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCS
T ss_pred HHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCC
Confidence 4555555433 456788899999999999998 88 579999999999999998887664432 12237888988876
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHH
Q 036742 554 ----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAE 592 (629)
Q Consensus 554 ----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~ 592 (629)
||+.+++-.-..+... .....+..++++++.++...
T Consensus 414 fSGADI~~l~~eAa~~Air~---~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 414 STGAELRSVCTEAGMFAIRA---RRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHH---TCSSBCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHc---CCCccCHHHHHHHHHHHhcC
Confidence 5555444322222211 11223346777777666543
No 32
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.3e-19 Score=196.02 Aligned_cols=210 Identities=15% Similarity=0.166 Sum_probs=141.6
Q ss_pred cCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742 352 HQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL 418 (629)
Q Consensus 352 yrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~ 418 (629)
-...+|+||+|.+++++.|++++. -| ...++|||||||||||++|++||.++ +..
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-~~~----------- 242 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-GAN----------- 242 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-TCE-----------
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCC-----------
Confidence 345677999999999999998884 12 23489999999999999999999997 433
Q ss_pred ccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--------------HHHHHHH
Q 036742 419 VPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--------------EHIQYLI 480 (629)
Q Consensus 419 ~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--------------~~~q~aL 480 (629)
++.++++. +.+.. ...++ ..|.......++||||||+|.+. ....+.|
T Consensus 243 --------~~~v~~s~l~sk~~Ges---e~~ir---~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~l 308 (437)
T 4b4t_L 243 --------FIFSPASGIVDKYIGES---ARIIR---EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 308 (437)
T ss_dssp --------EEEEEGGGTCCSSSSHH---HHHHH---HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHH
T ss_pred --------EEEEehhhhccccchHH---HHHHH---HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHH
Confidence 45565532 22221 12222 23333334456899999999882 1234566
Q ss_pred HHHHhccC--CCcEEEEEecCCccchHHHhhc--c-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC--
Q 036742 481 KWIMDGYT--DSCKLILCCEDDVDIIESVKTH--C-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-- 553 (629)
Q Consensus 481 lrilEe~~--~~~~~ILitN~~~~I~~aLrSR--~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-- 553 (629)
+..|+.+. ..+.||++||.++.|+++|+++ + ..|+|+.|+.++..++|+.++.+..+. ++..+..|+..+.|
T Consensus 309 L~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 309 LTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFN 387 (437)
T ss_dssp HHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCC
T ss_pred HHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCC
Confidence 77777544 4578999999999999999886 4 479999999999999998888764432 22347888888776
Q ss_pred --CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHH
Q 036742 554 --NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELAA 591 (629)
Q Consensus 554 --DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~ 591 (629)
||+.+++-.-..+.. .........++.+++..+..
T Consensus 388 GADi~~l~~eA~~~air---~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 388 GADIRNCATEAGFFAIR---DDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHHHHHHHHHHHH---TTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHHh
Confidence 555544432222221 11223344666666665543
No 33
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-19 Score=198.52 Aligned_cols=183 Identities=18% Similarity=0.214 Sum_probs=129.4
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
+.-.+.+|+||+|.+++++.|++.+. .| ...++|||||||||||++|+|||.++ +..
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-~~~--------- 242 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-NAT--------- 242 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-TCE---------
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-CCC---------
Confidence 44566788999999999999998763 12 23489999999999999999999997 433
Q ss_pred ccccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------H---HHH
Q 036742 417 VLVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------H---IQY 478 (629)
Q Consensus 417 v~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~---~q~ 478 (629)
++.++++. +.|.. ...++.+ |.......++||||||+|.+.. . ...
T Consensus 243 ----------f~~v~~s~l~~~~vGes---e~~ir~l---F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~ 306 (434)
T 4b4t_M 243 ----------FLKLAAPQLVQMYIGEG---AKLVRDA---FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTML 306 (434)
T ss_dssp ----------EEEEEGGGGCSSCSSHH---HHHHHHH---HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHH
T ss_pred ----------EEEEehhhhhhcccchH---HHHHHHH---HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHH
Confidence 45565532 22221 1222322 2222233467999999999821 1 234
Q ss_pred HHHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcc
Q 036742 479 LIKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAK 552 (629)
Q Consensus 479 aLlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~ 552 (629)
.|+..|+.+. ..+.||++||.++.|+++|++ |+ ..|.|+.|+.++..++|+.++.+..+ +++ .+..||+.+.
T Consensus 307 ~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~ 384 (434)
T 4b4t_M 307 ELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTD 384 (434)
T ss_dssp HHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCS
T ss_pred HHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCC
Confidence 5666666543 456788899999999999988 77 47999999999999999988877543 232 3788898887
Q ss_pred C----CHHHHHH
Q 036742 553 Q----NLRKAIM 560 (629)
Q Consensus 553 G----DiR~AIn 560 (629)
| |++.+++
T Consensus 385 G~sGADi~~l~~ 396 (434)
T 4b4t_M 385 EFNGAQLKAVTV 396 (434)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 6 5554444
No 34
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.81 E-value=1.1e-18 Score=183.75 Aligned_cols=227 Identities=15% Similarity=0.111 Sum_probs=156.9
Q ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHc----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.|..+|.| ++++|++..++.|..++.. +...+++|+||||||||++|+++++.+..... ...
T Consensus 11 ~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-----------~~~ 76 (387)
T 2v1u_A 11 VLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-----------SLG 76 (387)
T ss_dssp HHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-----------HHT
T ss_pred hcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-----------ccC
Confidence 45567877 8899999999999998853 44568999999999999999999998732100 000
Q ss_pred CCcceEEEecccchhhHHHHHHH------------------HHHHHHHhccCcCCCCeEEEEEccchhhHH--HHHHHHH
Q 036742 423 SSAHHVELNVNLQANAKYALMGL------------------VKEIRDNLAITPEVSNAMIVIYEVDKAAEH--IQYLIKW 482 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~------------------lrei~~~~~~~~~~~~kVIIIDEID~Ls~~--~q~aLlr 482 (629)
....++++++........++..+ +..+...+. ......||||||+|.+... .+..|..
T Consensus 77 ~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~vlilDEi~~l~~~~~~~~~l~~ 154 (387)
T 2v1u_A 77 VLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS--RLRGIYIIVLDEIDFLPKRPGGQDLLYR 154 (387)
T ss_dssp CCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT--TSCSEEEEEEETTTHHHHSTTHHHHHHH
T ss_pred CCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh--ccCCeEEEEEccHhhhcccCCCChHHHh
Confidence 01236777775332222122221 122221111 1223459999999999876 6777777
Q ss_pred HHhcc-----CCCcEEEEEecCC---ccchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHH
Q 036742 483 IMDGY-----TDSCKLILCCEDD---VDIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIATK 550 (629)
Q Consensus 483 ilEe~-----~~~~~~ILitN~~---~~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~~ 550 (629)
+++.. ...+.+|+++|.. ..+.+++.+|+ ..+.|++|+.+++..+|...+.. .+..++++++..+++.
T Consensus 155 l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 234 (387)
T 2v1u_A 155 ITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAAL 234 (387)
T ss_dssp HHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHH
T ss_pred HhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 77643 4567899999987 56889999999 78999999999999999998875 4567889999999999
Q ss_pred cc---CCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742 551 AK---QNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIEL 589 (629)
Q Consensus 551 s~---GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei 589 (629)
+. ||+|.++++|+.+...+...........++.+++.++
T Consensus 235 ~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 235 AAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 98 9999999999876543321122233345555555433
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.81 E-value=1.4e-18 Score=174.38 Aligned_cols=216 Identities=15% Similarity=0.099 Sum_probs=139.4
Q ss_pred CCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 354 PSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
+.+|++|+|++.+++.|++++.. ...+++||+||||||||++|+++|+++...
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~--------------- 66 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP--------------- 66 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Confidence 46789999999999998887741 233479999999999999999999997332
Q ss_pred cCCcceEEEecccchh-hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh------------HHHHHHHHHHH---h
Q 036742 422 ASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA------------EHIQYLIKWIM---D 485 (629)
Q Consensus 422 ~sS~~vleInas~~~~-~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls------------~~~q~aLlril---E 485 (629)
++.+++..... ........++.+..... ...+.||||||+|.+. ...+..|..++ +
T Consensus 67 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 67 -----FLAMAGAEFVEVIGGLGAARVRSLFKEAR---ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp -----EEEEETTTTSSSSTTHHHHHHHHHHHHHH---HTCSEEEEEECC-------------------CHHHHHHHHHHH
T ss_pred -----EEEechHHHHhhccChhHHHHHHHHHHHH---hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh
Confidence 45555532110 00011122222222211 1235799999999983 22333444444 3
Q ss_pred c--cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHccCCH-HHH
Q 036742 486 G--YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAKQNL-RKA 558 (629)
Q Consensus 486 e--~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~GDi-R~A 558 (629)
. ....+.+|+++|.+..+++++++ || ..+.|..|+.++..+++...+.+.++..+.+. +..|+..+.|.. +.+
T Consensus 139 ~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 139 GMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp TCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHH
T ss_pred CcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHH
Confidence 3 23467788899999999999998 88 67899999999999999999998888777664 578888888754 455
Q ss_pred HHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHH
Q 036742 559 IMALEACKALNYPFADDQPIPLGWEEVLIELAAE 592 (629)
Q Consensus 559 InlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~ 592 (629)
.++++.+...+..-........+++.++.++...
T Consensus 219 ~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 219 ANICNEAALHAAREGHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHHHHHHHTC--------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccC
Confidence 5666666554443223334456777777776554
No 36
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=6e-19 Score=179.95 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=145.6
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
....+.+|++|+|++.+++.|.+++.. ....++||+||||||||++|+++|+++ +..
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-~~~--------- 78 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-NAT--------- 78 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-TCE---------
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCC---------
Confidence 445567899999999999999988753 344589999999999999999999986 332
Q ss_pred ccccccCCcceEEEecccchh-hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-----------hHHHHHHHHHHH
Q 036742 417 VLVPVASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-----------AEHIQYLIKWIM 484 (629)
Q Consensus 417 v~~~i~sS~~vleInas~~~~-~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-----------s~~~q~aLlril 484 (629)
++.+++..... ........++.+.... ....+.||||||+|.+ ....+..|..++
T Consensus 79 ----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 145 (285)
T 3h4m_A 79 ----------FIRVVGSELVKKFIGEGASLVKDIFKLA---KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLL 145 (285)
T ss_dssp ----------EEEEEGGGGCCCSTTHHHHHHHHHHHHH---HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHH
T ss_pred ----------EEEEehHHHHHhccchHHHHHHHHHHHH---HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHH
Confidence 45555532110 0001112222222211 1223469999999998 345566666665
Q ss_pred hc-----cCCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CH
Q 036742 485 DG-----YTDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NL 555 (629)
Q Consensus 485 Ee-----~~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-Di 555 (629)
+. ....+.||++||.++.+++++++ |+ ..+.|++|+.++..++|...+...++. .+..+..|+..+.| ..
T Consensus 146 ~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 146 AEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVG 224 (285)
T ss_dssp HHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCH
T ss_pred HHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCH
Confidence 53 23467889999999999999998 87 479999999999999999888765543 23347788888877 33
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHH
Q 036742 556 RKAIMALEACKALNYPFADDQPIPLGWEEVLIELAAE 592 (629)
Q Consensus 556 R~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~~~ 592 (629)
|.+..++..+...+...........++.+++.++...
T Consensus 225 ~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 225 AELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 3444444433332222223345557777777777654
No 37
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.80 E-value=1.8e-18 Score=182.69 Aligned_cols=202 Identities=17% Similarity=0.179 Sum_probs=151.4
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHc----CC--CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccc
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVD----GN--CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVL 418 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~----g~--~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~ 418 (629)
..+|..+|+| ++++|++..++.|..++.. +. .++++|+||+|||||++++++++.+....
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~----------- 72 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT----------- 72 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-----------
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-----------
Confidence 3467789998 8899999999988888864 22 33799999999999999999999975431
Q ss_pred ccccCCcceEEEecccchhhHHHHHHHHHH------------------HHHHhccCcCCCCeEEEEEccchhhHHHHHHH
Q 036742 419 VPVASSAHHVELNVNLQANAKYALMGLVKE------------------IRDNLAITPEVSNAMIVIYEVDKAAEHIQYLI 480 (629)
Q Consensus 419 ~~i~sS~~vleInas~~~~~k~~l~~~lre------------------i~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aL 480 (629)
...++++++.........+..++.. +...+. ......||||||+|.+....+..|
T Consensus 73 -----~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~vlilDE~~~l~~~~~~~L 145 (389)
T 1fnn_A 73 -----TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR--ERDLYMFLVLDDAFNLAPDILSTF 145 (389)
T ss_dssp -----CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--HTTCCEEEEEETGGGSCHHHHHHH
T ss_pred -----CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh--hcCCeEEEEEECccccchHHHHHH
Confidence 1126777764332221122111111 111110 112346999999999998999999
Q ss_pred HHHHhccC----CCcEEEEEecCC---ccchHHHhhcce--EeeccCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHH
Q 036742 481 KWIMDGYT----DSCKLILCCEDD---VDIIESVKTHCK--VIKVDPPVTHEIMEVLIQIARK--EDFDLSMTFAAKIAT 549 (629)
Q Consensus 481 lrilEe~~----~~~~~ILitN~~---~~I~~aLrSR~~--~I~F~ppt~eei~~iL~~i~~k--egl~is~e~L~~Ia~ 549 (629)
.++++.+. ..+.||++||.. ..+.+.+.+||. .+.|++++.+++.++|...+.. ....++++++..|++
T Consensus 146 ~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 225 (389)
T 1fnn_A 146 IRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIAD 225 (389)
T ss_dssp HHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHH
T ss_pred HHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 99987654 478899999987 557889999986 6999999999999999998865 124689999999999
Q ss_pred Hc---------cCCHHHHHHHHHHHHh
Q 036742 550 KA---------KQNLRKAIMALEACKA 567 (629)
Q Consensus 550 ~s---------~GDiR~AInlLq~~~~ 567 (629)
.+ .||+|.++++|+.+..
T Consensus 226 ~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 226 ITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 99 8999999999987654
No 38
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.5e-19 Score=191.58 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=127.8
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHH-----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 351 KHQPSSLNGFICHRHEAQLLKELVV-----------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk~~L~-----------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
+-...+|+||+|.+++++.|++.+. -| ...++|||||||||||++|++||+++ +..
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-~~~---------- 233 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-KAA---------- 233 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-TCE----------
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCC----------
Confidence 3344677999999999999998874 12 23489999999999999999999997 333
Q ss_pred cccccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHH
Q 036742 418 LVPVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYL 479 (629)
Q Consensus 418 ~~~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~a 479 (629)
++.++++. +.|.. ...++. .|.......++||||||+|.+.. ...+.
T Consensus 234 ---------~~~v~~~~l~~~~~Ge~---e~~ir~---lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~ 298 (428)
T 4b4t_K 234 ---------FIRVNGSEFVHKYLGEG---PRMVRD---VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE 298 (428)
T ss_dssp ---------EEEEEGGGTCCSSCSHH---HHHHHH---HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHH
T ss_pred ---------eEEEecchhhccccchh---HHHHHH---HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHH
Confidence 45565532 22211 122233 22223334568999999998831 24566
Q ss_pred HHHHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeecc-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 480 IKWIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVD-PPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 480 LlrilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~-ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
|+..|+.+. .++.||++||.++.|+++|++ |+ ..|.|+ .|+.++...+|+.++.+..+. ++..++.|+..+.|
T Consensus 299 lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G 377 (428)
T 4b4t_K 299 LLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDS 377 (428)
T ss_dssp HHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTT
T ss_pred HHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCC
Confidence 777777543 456788999999999999998 66 468896 688888889998888765432 22347888988776
Q ss_pred ----CHHHHHH
Q 036742 554 ----NLRKAIM 560 (629)
Q Consensus 554 ----DiR~AIn 560 (629)
|++.+++
T Consensus 378 ~sgadi~~l~~ 388 (428)
T 4b4t_K 378 LSGAVIAAIMQ 388 (428)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 5554443
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.80 E-value=3.9e-19 Score=194.77 Aligned_cols=188 Identities=18% Similarity=0.132 Sum_probs=136.0
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHH------------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCC
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVV------------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNE 411 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~------------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~ 411 (629)
+...+..++.+.+|+||+|++.+++.|++++. .....++||+||||||||++|++||+++.+..
T Consensus 120 ~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~---- 195 (444)
T 2zan_A 120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST---- 195 (444)
T ss_dssp ----CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSE----
T ss_pred hhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCC----
Confidence 34456678899999999999999999999883 12335899999999999999999999963332
Q ss_pred CCCccccccccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchh-----------hHHHHHH
Q 036742 412 KWPTQVLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA-----------AEHIQYL 479 (629)
Q Consensus 412 ~~~~~v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L-----------s~~~q~a 479 (629)
++.+++....... ......++.+.... ....+.||||||||.+ ....++.
T Consensus 196 ---------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 257 (444)
T 2zan_A 196 ---------------FFSISSSDLVSKWLGESEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTE 257 (444)
T ss_dssp ---------------EEEECCC---------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHH
T ss_pred ---------------EEEEeHHHHHhhhcchHHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHH
Confidence 3444443211100 00001122222111 1234579999999998 2346667
Q ss_pred HHHHHhcc---CCCcEEEEEecCCccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 480 IKWIMDGY---TDSCKLILCCEDDVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 480 LlrilEe~---~~~~~~ILitN~~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
|+..++.. ...+.||++||.++.++++|++|| ..+.|+.|+.++...+|..++...++.+++..+..|+..+.|
T Consensus 258 lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G 335 (444)
T 2zan_A 258 FLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDG 335 (444)
T ss_dssp HHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTT
T ss_pred HHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 77777653 466789999999999999999999 578899999999999999998887777889999999999988
No 40
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.80 E-value=4.6e-19 Score=178.82 Aligned_cols=217 Identities=14% Similarity=0.094 Sum_probs=145.7
Q ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCC
Q 036742 347 FWADKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWP 414 (629)
Q Consensus 347 lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~ 414 (629)
+|.+++++.+|+||+|++.+++.|.+++.. ....++||+||||||||++|+++|+++...
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-------- 72 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-------- 72 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--------
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--------
Confidence 589999999999999999999888776641 123479999999999999999999987322
Q ss_pred ccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHH
Q 036742 415 TQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYL 479 (629)
Q Consensus 415 ~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~a 479 (629)
++.+++...... .......++.+.+.. ....+.||||||+|.+.. ...+.
T Consensus 73 ------------~~~i~~~~~~~~~~~~~~~~~~~~~~~a---~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 137 (257)
T 1lv7_A 73 ------------FFTISGSDFVEMFVGVGASRVRDMFEQA---KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 137 (257)
T ss_dssp ------------EEEECSCSSTTSCCCCCHHHHHHHHHHH---HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHH
T ss_pred ------------EEEEeHHHHHHHhhhhhHHHHHHHHHHH---HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHH
Confidence 344444221000 000011222222221 122346999999998832 34455
Q ss_pred HHHHHhcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC
Q 036742 480 IKWIMDGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMT-FAAKIATKAKQ 553 (629)
Q Consensus 480 LlrilEe~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e-~L~~Ia~~s~G 553 (629)
++..++.. ...+.+|++||.++.+++++.+ |+ ..+.|..|+.++..+++...+.+.. +.++ .+..++..+.|
T Consensus 138 ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G 215 (257)
T 1lv7_A 138 MLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPG 215 (257)
T ss_dssp HHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTT
T ss_pred HHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCC
Confidence 56666643 3456788899999999999987 76 5688999999999999988876543 3333 36778899999
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 036742 554 -NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIE 588 (629)
Q Consensus 554 -DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~e 588 (629)
+.|.+.++++.+...+...........++++++.+
T Consensus 216 ~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 216 FSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 89998888877655433222223334555555444
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=5.1e-19 Score=193.74 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=148.4
Q ss_pred CCCccc-c--cHHHHHHHHHHHHcCC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 356 SLNGFI-C--HRHEAQLLKELVVDGN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 356 tfddIi-G--~e~~~~~Lk~~L~~g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
+|++++ | +..+...+..++.... .++++|+|||||||||||++|++++.... ....+++++
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~---------------~~~~v~~v~ 167 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE---------------PDLRVMYIT 167 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC---------------CSSCEEEEE
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC---------------CCCeEEEee
Confidence 789988 4 5556677777776543 66899999999999999999999874321 011267777
Q ss_pred cccchhhHHHHHHH----HHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCcc--
Q 036742 432 VNLQANAKYALMGL----VKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDVD-- 502 (629)
Q Consensus 432 as~~~~~k~~l~~~----lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~~-- 502 (629)
+..... .+...+ ...+...+. ....||||||+|.+.. ..++.|+.+++. ...+..+|++|+.+..
T Consensus 168 ~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 168 SEKFLN--DLVDSMKEGKLNEFREKYR----KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp HHHHHH--HHHHHHHTTCHHHHHHHHT----TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred HHHHHH--HHHHHHHcccHHHHHHHhc----CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 643211 011100 011111111 1346999999999975 677778777764 3456778888887433
Q ss_pred --chHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCCCC
Q 036742 503 --IIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQP 577 (629)
Q Consensus 503 --I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~~~~~~~~~~ 577 (629)
+.++|++|| .++.|.+|+.+++..+|...+...++.++++++..|+..+.||+|.+.++|+.+...+.... ...
T Consensus 242 ~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~-~~I 320 (440)
T 2z4s_A 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTG-KEV 320 (440)
T ss_dssp SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSS-SCC
T ss_pred HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCC
Confidence 789999999 68999999999999999999999999999999999999999999999999987655432111 112
Q ss_pred CchhHHHHHHHHHH-HHhcCCC-hHHHHHHHHHHHHHHHcC
Q 036742 578 IPLGWEEVLIELAA-EILADPS-PKRLVMVRGKIQKLLAEF 616 (629)
Q Consensus 578 ~~~~~ek~l~ei~~-~il~~~s-~~~L~~ir~kly~lL~~~ 616 (629)
....+++++.++.. .....-+ ++.+.+++...|++....
T Consensus 321 t~~~~~~~l~~~~~~~~~~~i~~~~~i~~~v~~~y~i~~~~ 361 (440)
T 2z4s_A 321 DLKEAILLLKDFIKPNRVKAMDPIDELIEIVAKVTGVPREE 361 (440)
T ss_dssp CHHHHHHHTSTTTCC--------------------------
T ss_pred CHHHHHHHHHHHhhccccccCChHHHHHHHHHHHhCCCHHH
Confidence 22334444433320 0001123 556666667777765543
No 42
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.2e-18 Score=180.04 Aligned_cols=197 Identities=11% Similarity=0.098 Sum_probs=133.3
Q ss_pred ccccHHHHHH----HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742 360 FICHRHEAQL----LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ 435 (629)
Q Consensus 360 IiG~e~~~~~----Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~ 435 (629)
+.|.++.++. |...+..+..+++||+||||||||++++++++++....... -.....++++||...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~----------~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARK----------ELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTT----------SSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhc----------cCCceEEEEEecccc
Confidence 5556555544 45555677888999999999999999999999985321000 001123788888543
Q ss_pred hhhHHHHHHHHHHH--------------HHHhccC--cCCCCeEEEEEccchhhHHHHHHHHHHHhc---cCCCcEEEEE
Q 036742 436 ANAKYALMGLVKEI--------------RDNLAIT--PEVSNAMIVIYEVDKAAEHIQYLIKWIMDG---YTDSCKLILC 496 (629)
Q Consensus 436 ~~~k~~l~~~lrei--------------~~~~~~~--~~~~~kVIIIDEID~Ls~~~q~aLlrilEe---~~~~~~~ILi 496 (629)
.....++..+++++ ...|... ......||||||+|.|. .++.|+.+++. ....+.||++
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i 169 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICV 169 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEE
Confidence 32222222222222 1111111 12234599999999998 56777777652 3345678888
Q ss_pred ecCCcc----chHHHhhcc--eEeeccCCCHHHHHHHHHHHHHhc--C--------------------------------
Q 036742 497 CEDDVD----IIESVKTHC--KVIKVDPPVTHEIMEVLIQIARKE--D-------------------------------- 536 (629)
Q Consensus 497 tN~~~~----I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~ke--g-------------------------------- 536 (629)
+|..+. +.+++++|+ ..|.|.+|+.+|+..||++.+... +
T Consensus 170 ~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (318)
T 3te6_A 170 GGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVI 249 (318)
T ss_dssp CCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEE
T ss_pred ecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence 988754 456788998 579999999999999999987652 1
Q ss_pred -CCCCHHHHHHHHH---HccCCHHHHHHHHHHHHhc
Q 036742 537 -FDLSMTFAAKIAT---KAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 537 -l~is~e~L~~Ia~---~s~GDiR~AInlLq~~~~~ 568 (629)
+.+++++++.+++ ...||+|+||++|+.+...
T Consensus 250 ~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ 285 (318)
T 3te6_A 250 NHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEI 285 (318)
T ss_dssp CEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 1368999999998 5789999999999876543
No 43
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.78 E-value=1.9e-18 Score=177.21 Aligned_cols=189 Identities=16% Similarity=0.213 Sum_probs=134.3
Q ss_pred CcccccHHHHHHHHHHHHc--------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 358 NGFICHRHEAQLLKELVVD--------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~--------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
++|+|++.+++.|..++.. ....++||+||||||||++|+++|+.+. ..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~---------------- 77 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-AP---------------- 77 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-CC----------------
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-CC----------------
Confidence 6799999999999888864 2345899999999999999999999973 22
Q ss_pred CcceEEEecccchh---hHHHHHHHHHHHHHHhccC--cCCCCeEEEEEccchhhHHH------------HHHHHHHHhc
Q 036742 424 SAHHVELNVNLQAN---AKYALMGLVKEIRDNLAIT--PEVSNAMIVIYEVDKAAEHI------------QYLIKWIMDG 486 (629)
Q Consensus 424 S~~vleInas~~~~---~k~~l~~~lrei~~~~~~~--~~~~~kVIIIDEID~Ls~~~------------q~aLlrilEe 486 (629)
++.+++..... ........++++....... ....+.||||||+|.+.... ++.|+.+++.
T Consensus 78 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 78 ---FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp ---EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred ---EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 45666532211 0000011223322211000 00124599999999996543 8889999986
Q ss_pred c----------CCCcEEEEEe----cCCccchHHHhhcce-EeeccCCCHHHHHHHHHH-----------HHHhcC--CC
Q 036742 487 Y----------TDSCKLILCC----EDDVDIIESVKTHCK-VIKVDPPVTHEIMEVLIQ-----------IARKED--FD 538 (629)
Q Consensus 487 ~----------~~~~~~ILit----N~~~~I~~aLrSR~~-~I~F~ppt~eei~~iL~~-----------i~~keg--l~ 538 (629)
. ...+.||+++ +.+..++++|++||. .+.|++|+.+++..+|.. .+...+ +.
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 234 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIA 234 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEE
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeec
Confidence 3 2456777775 355678999999994 699999999999999882 333345 36
Q ss_pred CCHHHHHHHHHHc--------cCCHHHHHHHHHHHH
Q 036742 539 LSMTFAAKIATKA--------KQNLRKAIMALEACK 566 (629)
Q Consensus 539 is~e~L~~Ia~~s--------~GDiR~AInlLq~~~ 566 (629)
+++++++.|++.+ .|++|.+.++|+.+.
T Consensus 235 ~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 235 FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 8999999999998 799999999998754
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.78 E-value=8.6e-18 Score=175.61 Aligned_cols=219 Identities=15% Similarity=0.135 Sum_probs=153.8
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSA 425 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~ 425 (629)
..|.++++|..+++|+|++++++.+..++..+. ++||+||||||||++|+++|+.+.+.
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~~------------------- 73 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDLD------------------- 73 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTCC-------------------
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCCC-------------------
Confidence 358999999999999999999999988888754 89999999999999999999986332
Q ss_pred ceEEEecccchhhHHHHHHHHHHH-----HHHhccC-cCCCCeEEEEEccchhhHHHHHHHHHHHhcc-----------C
Q 036742 426 HHVELNVNLQANAKYALMGLVKEI-----RDNLAIT-PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-----------T 488 (629)
Q Consensus 426 ~vleInas~~~~~k~~l~~~lrei-----~~~~~~~-~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-----------~ 488 (629)
+..+++....... +++... ...+... ......||||||+|.+....++.|+..+++. .
T Consensus 74 -~~~i~~~~~~~~~----~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~ 148 (331)
T 2r44_A 74 -FHRIQFTPDLLPS----DLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLD 148 (331)
T ss_dssp -EEEEECCTTCCHH----HHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECC
T ss_pred -eEEEecCCCCChh----hcCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECC
Confidence 2333331111000 000000 0000000 1112359999999999999999999999863 3
Q ss_pred CCcEEEEEecCCc-----cchHHHhhcce-EeeccCCCHHHHHHHHHHHHHhc----------------------CCCCC
Q 036742 489 DSCKLILCCEDDV-----DIIESVKTHCK-VIKVDPPVTHEIMEVLIQIARKE----------------------DFDLS 540 (629)
Q Consensus 489 ~~~~~ILitN~~~-----~I~~aLrSR~~-~I~F~ppt~eei~~iL~~i~~ke----------------------gl~is 540 (629)
..+.+|.++|... .++++|++||. .+.|.+|+.++..++|...+..+ ++.++
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 228 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS 228 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred CCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence 3455666666432 38899999997 59999999999999998876542 67789
Q ss_pred HHHHHHHHHHc-----cC---------------CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742 541 MTFAAKIATKA-----KQ---------------NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 541 ~e~L~~Ia~~s-----~G---------------DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
++++++|++.+ .+ +.|.+++++..+...+.....+...+.++.+++..+.
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 99999998765 23 6999999998766554333333445566665555443
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=2.9e-18 Score=189.05 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=144.8
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.....|+++|+|.+|++|+|++..++.+.+++.....+++||+||||||||++|++||..+.+..+.. ..
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~----------~l 234 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE----------IL 234 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCT----------TT
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh----------hh
Confidence 44567999999999999999999999999999988888999999999999999999999986543211 11
Q ss_pred CCcceEEEecc-cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 423 SSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 423 sS~~vleInas-~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
....++.+++. ...+ .....++.+...... ..+.||||| ...++++.|+..++. ..+.+|++||...
T Consensus 235 ~~~~~~~l~~~~~~~g---~~e~~~~~~~~~~~~---~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e 302 (468)
T 3pxg_A 235 RDKRVMTLDMGTKYRG---EFEDRLKKVMDEIRQ---AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDE 302 (468)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHT---CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTT
T ss_pred cCCeEEEeeCCccccc---hHHHHHHHHHHHHHh---cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHH
Confidence 12234455543 1111 111122333322221 235699999 445677778877763 5688999999876
Q ss_pred -----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCH------HHHHHHHHHHH
Q 036742 502 -----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQNL------RKAIMALEACK 566 (629)
Q Consensus 502 -----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GDi------R~AInlLq~~~ 566 (629)
.++++|++||.++.|.+|+.+++..+|..++.+ .++.++++++..++..+.+.+ +.++++|+.++
T Consensus 303 ~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 303 YRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (468)
T ss_dssp THHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHH
Confidence 478999999999999999999999999988765 788999999999999887655 47999997655
Q ss_pred h
Q 036742 567 A 567 (629)
Q Consensus 567 ~ 567 (629)
.
T Consensus 383 ~ 383 (468)
T 3pxg_A 383 S 383 (468)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=3.7e-17 Score=170.50 Aligned_cols=188 Identities=16% Similarity=0.198 Sum_probs=139.2
Q ss_pred CCCCccc---ccHHHHHHHHHHHHcC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEE
Q 036742 355 SSLNGFI---CHRHEAQLLKELVVDG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVE 429 (629)
Q Consensus 355 ~tfddIi---G~e~~~~~Lk~~L~~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vle 429 (629)
.+|++++ ++..+...+..++... ..++++|+||||||||++|+++++++.... ..+++
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~-----------------~~~~~ 70 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG-----------------YRVIY 70 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT-----------------CCEEE
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCC-----------------CEEEE
Confidence 4789987 4566777788888764 356899999999999999999999874321 12677
Q ss_pred EecccchhhHHHHHHH----HHHHHHHhccCcCCCCeEEEEEccchhhH--HHHHHHHHHHhc-cCCCcEEEEEecCCc-
Q 036742 430 LNVNLQANAKYALMGL----VKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQYLIKWIMDG-YTDSCKLILCCEDDV- 501 (629)
Q Consensus 430 Inas~~~~~k~~l~~~----lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~aLlrilEe-~~~~~~~ILitN~~~- 501 (629)
+++..... ...... ...+...+ ....||||||+|.+.. ..+..|..+++. ...+..+|++++...
T Consensus 71 i~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 71 SSADDFAQ--AMVEHLKKGTINEFRNMY-----KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp EEHHHHHH--HHHHHHHHTCHHHHHHHH-----HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred EEHHHHHH--HHHHHHHcCcHHHHHHHh-----cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 77743211 011111 11111111 1245999999999975 566777776653 234567888777543
Q ss_pred ---cchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 502 ---DIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 502 ---~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
.+.++|.+|| .++.|++ +.+++..+|...+...++.+++++++.|+..+ ||+|.+.+.|+.+...
T Consensus 144 ~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 144 KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 4789999999 7899999 99999999999999999999999999999999 9999999999876654
No 47
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=7.4e-17 Score=169.30 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=142.9
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHc----CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccc
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD----GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPV 421 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~----g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i 421 (629)
..|..+|.| ++++|++..++.|..++.. +...+++|+||+|||||++|+++++.+.....
T Consensus 11 ~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~------------- 74 (386)
T 2qby_A 11 EYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL------------- 74 (386)
T ss_dssp GGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC-------------
T ss_pred hhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-------------
Confidence 345567777 8899999999999998873 34558999999999999999999998742100
Q ss_pred cCCcceEEEecccchhhHHHH------------------HHHHHHHHHHhccCcCCCCeEEEEEccchhh----HHHHHH
Q 036742 422 ASSAHHVELNVNLQANAKYAL------------------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAA----EHIQYL 479 (629)
Q Consensus 422 ~sS~~vleInas~~~~~k~~l------------------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls----~~~q~a 479 (629)
....++++++.........+ .+.+..+...+.. ...+.||||||+|.+. ......
T Consensus 75 -~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~ 151 (386)
T 2qby_A 75 -GKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYK 151 (386)
T ss_dssp -SSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHH
T ss_pred -CCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHH
Confidence 01125666653211111111 1112222221111 2235699999999996 345666
Q ss_pred HHHHHhcc-CCCcEEEEEecCCc---cchHHHhhcc--eEeeccCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHc
Q 036742 480 IKWIMDGY-TDSCKLILCCEDDV---DIIESVKTHC--KVIKVDPPVTHEIMEVLIQIARKE--DFDLSMTFAAKIATKA 551 (629)
Q Consensus 480 LlrilEe~-~~~~~~ILitN~~~---~I~~aLrSR~--~~I~F~ppt~eei~~iL~~i~~ke--gl~is~e~L~~Ia~~s 551 (629)
|.+.++.. ...+.+|++++... .+.+.+.+|+ ..+.|++++.+++.++|...+... ...++++++..|++.+
T Consensus 152 l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (386)
T 2qby_A 152 LSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALA 231 (386)
T ss_dssp HHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHH
T ss_pred HhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 66666542 34677899998764 5778899999 689999999999999999887643 3578999999999999
Q ss_pred c---CCHHHHHHHHHHHHhc
Q 036742 552 K---QNLRKAIMALEACKAL 568 (629)
Q Consensus 552 ~---GDiR~AInlLq~~~~~ 568 (629)
. |++|.++++|+.+...
T Consensus 232 ~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 232 AREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp HHTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 8 9999999999876543
No 48
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.73 E-value=2.6e-17 Score=170.91 Aligned_cols=180 Identities=18% Similarity=0.120 Sum_probs=125.3
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQ 416 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~ 416 (629)
..+.+.+|+||+|++.+++.|++++.. ....++||+||||||||++|++||+++ +..
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~-~~~--------- 76 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QAN--------- 76 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT-TCE---------
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh-CCC---------
Confidence 456778899999999999999988852 223479999999999999999999986 322
Q ss_pred ccccccCCcceEEEecccchhhH-HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH--------------HHHHHH
Q 036742 417 VLVPVASSAHHVELNVNLQANAK-YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH--------------IQYLIK 481 (629)
Q Consensus 417 v~~~i~sS~~vleInas~~~~~k-~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~--------------~q~aLl 481 (629)
++.+++....... ......++.+... .....++||||||+|.+... .++.|+
T Consensus 77 ----------~i~v~~~~l~~~~~g~~~~~~~~~f~~---a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL 143 (301)
T 3cf0_A 77 ----------FISIKGPELLTMWFGESEANVREIFDK---ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 143 (301)
T ss_dssp ----------EEEECHHHHHHHHHTTCTTHHHHHHHH---HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHH
T ss_pred ----------EEEEEhHHHHhhhcCchHHHHHHHHHH---HHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHH
Confidence 4566653211000 0000111222211 11223579999999998653 356777
Q ss_pred HHHhcc--CCCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Q 036742 482 WIMDGY--TDSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ 553 (629)
Q Consensus 482 rilEe~--~~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G 553 (629)
..++.. ..++.||++||.++.+++++++ |+ ..+.|+.|+.++..++|+.++.+.++. .+..+..|+..+.|
T Consensus 144 ~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g 219 (301)
T 3cf0_A 144 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNG 219 (301)
T ss_dssp HHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSS
T ss_pred HHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCC
Confidence 777743 3467889999999999999988 88 579999999999999999888776543 22235566666544
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.73 E-value=4.6e-17 Score=170.17 Aligned_cols=239 Identities=14% Similarity=0.075 Sum_probs=143.6
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc---ccCC--
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP---VASS-- 424 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~---i~sS-- 424 (629)
..-+|.+|++|+|++.+++.+...+..+...++||+||||||||++|+++++.+............|.... ....
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 95 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence 44467899999999998877766665444557999999999999999999998632100000000011000 0000
Q ss_pred --------cceEEEecccchhhHHHHHH-HHHHH-HHH-hccC-c---CCCCeEEEEEccchhhHHHHHHHHHHHhcc--
Q 036742 425 --------AHHVELNVNLQANAKYALMG-LVKEI-RDN-LAIT-P---EVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-- 487 (629)
Q Consensus 425 --------~~vleInas~~~~~k~~l~~-~lrei-~~~-~~~~-~---~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-- 487 (629)
..++.+...... ..++.. .+... ... .... . ...+.||||||+|.+....++.|+.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~ 173 (350)
T 1g8p_A 96 STNVIRKPTPVVDLPLGVSE--DRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGEN 173 (350)
T ss_dssp CCCEEEECCCEEEECTTCCH--HHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEE
T ss_pred ccccccCCCcccccCCCcch--hhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCce
Confidence 112222211100 000000 00110 110 0000 0 112569999999999999999999999863
Q ss_pred -----------CCCcEEEEEecCCc-cchHHHhhcceE-eeccCCC-HHHHHHHHHHH----------------------
Q 036742 488 -----------TDSCKLILCCEDDV-DIIESVKTHCKV-IKVDPPV-THEIMEVLIQI---------------------- 531 (629)
Q Consensus 488 -----------~~~~~~ILitN~~~-~I~~aLrSR~~~-I~F~ppt-~eei~~iL~~i---------------------- 531 (629)
...+.+|+++|... .+.++|++||.. +.|.+|+ .++...++..+
T Consensus 174 ~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (350)
T 1g8p_A 174 VVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIR 253 (350)
T ss_dssp EECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHH
Confidence 13566778888644 689999999965 9999995 44444555441
Q ss_pred -------HHhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742 532 -------ARKEDFDLSMTFAAKIATKAKQ----NLRKAIMALEACKALNYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 532 -------~~kegl~is~e~L~~Ia~~s~G----DiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
....++.++++++..|++.+.+ ++|.++++|+.+...+...........++.+++..+.
T Consensus 254 ~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 254 NQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMAL 323 (350)
T ss_dssp HHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence 2234568999999999999877 8999999998765543322222344455555554433
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.73 E-value=2.1e-17 Score=155.48 Aligned_cols=170 Identities=13% Similarity=0.160 Sum_probs=121.5
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
...|.++|+|..|++++|+++.++.+..++..+...++||+||||||||++|+++++.+.+..... ....
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~----------~~~~ 78 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPE----------GLKG 78 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCG----------GGTT
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCch----------hhcC
Confidence 356999999999999999999999999999887778999999999999999999999985432100 0112
Q ss_pred cceEEEecccch---hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------HHHHHHHHHHhccCCCcEE
Q 036742 425 AHHVELNVNLQA---NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------HIQYLIKWIMDGYTDSCKL 493 (629)
Q Consensus 425 ~~vleInas~~~---~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------~~q~aLlrilEe~~~~~~~ 493 (629)
..++.+++.... .........+..+...... ...+.||||||+|.+.. ..++.|+.+++. ..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 154 (195)
T 1jbk_A 79 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHC 154 (195)
T ss_dssp CEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCE
T ss_pred CcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEE
Confidence 235566553211 1111122233333332211 23356999999999953 336777777764 46788
Q ss_pred EEEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHH
Q 036742 494 ILCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVL 528 (629)
Q Consensus 494 ILitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL 528 (629)
|+++|... .+++++++||..+.|.+|+.+++.++|
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 99998765 578999999999999999999987765
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.72 E-value=8.8e-17 Score=177.66 Aligned_cols=215 Identities=16% Similarity=0.148 Sum_probs=143.9
Q ss_pred hhhc-cCCCCCCcccccHHHHHHHHHHHHc-----------CC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCC
Q 036742 348 WADK-HQPSSLNGFICHRHEAQLLKELVVD-----------GN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWP 414 (629)
Q Consensus 348 W~eK-yrP~tfddIiG~e~~~~~Lk~~L~~-----------g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~ 414 (629)
|.+. ....+|+||+|++++++.|++++.. .. ..++||+||||||||++|++||.++...
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-------- 76 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-------- 76 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--------
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--------
Confidence 4444 4566899999999999988887741 12 2479999999999999999999997322
Q ss_pred ccccccccCCcceEEEecccc----hhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HH
Q 036742 415 TQVLVPVASSAHHVELNVNLQ----ANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HI 476 (629)
Q Consensus 415 ~~v~~~i~sS~~vleInas~~----~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~ 476 (629)
++.++++.. .+. ....++.+... .....++||||||+|.+.. ..
T Consensus 77 ------------f~~is~~~~~~~~~g~---~~~~~r~lf~~---A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~ 138 (476)
T 2ce7_A 77 ------------FFHISGSDFVELFVGV---GAARVRDLFAQ---AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQT 138 (476)
T ss_dssp ------------EEEEEGGGTTTCCTTH---HHHHHHHHHHH---HHHTCSEEEEEETGGGTCCC---------CHHHHH
T ss_pred ------------eeeCCHHHHHHHHhcc---cHHHHHHHHHH---HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHH
Confidence 455555321 111 11222222222 1123457999999999832 24
Q ss_pred HHHHHHHHhcc--CCCcEEEEEecCCccchHHHhh--cce-EeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHH
Q 036742 477 QYLIKWIMDGY--TDSCKLILCCEDDVDIIESVKT--HCK-VIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATK 550 (629)
Q Consensus 477 q~aLlrilEe~--~~~~~~ILitN~~~~I~~aLrS--R~~-~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~ 550 (629)
++.|+..++.+ ...+.||++||.++.+++++++ ||. .+.|..|+.++..++|+..+.+.. +.+++ +..|+..
T Consensus 139 l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~ 216 (476)
T 2ce7_A 139 LNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKR 216 (476)
T ss_dssp HHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHT
T ss_pred HHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHh
Confidence 56666666643 3467788899999999999887 774 789999999999999988776543 33333 7889999
Q ss_pred ccCCH-HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHH
Q 036742 551 AKQNL-RKAIMALEACKALNYPFADDQPIPLGWEEVLIELA 590 (629)
Q Consensus 551 s~GDi-R~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei~ 590 (629)
+.|.. |.+.+++..+...+...........+++..+..+.
T Consensus 217 t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHh
Confidence 99987 67777777654433211122333456666665543
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=4.9e-17 Score=167.42 Aligned_cols=188 Identities=11% Similarity=0.174 Sum_probs=137.0
Q ss_pred CcccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
++++|++.+++.|...+..+. ..++||+||||||||++|+++|+.+.+... .++
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~-----------------~~~ 79 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE-----------------AMI 79 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG-----------------GEE
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc-----------------ceE
Confidence 678999999999998887531 236999999999999999999999854321 255
Q ss_pred EEecccchhhHHHHHHHH------------HHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC--------
Q 036742 429 ELNVNLQANAKYALMGLV------------KEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------- 488 (629)
Q Consensus 429 eInas~~~~~k~~l~~~l------------rei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------- 488 (629)
.+++....... .....+ ..+..... ...+.||||||+|.+....++.|+++++...
T Consensus 80 ~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~ 155 (311)
T 4fcw_A 80 RIDMTEYMEKH-AVSRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRT 155 (311)
T ss_dssp EEEGGGCCSTT-HHHHHHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCE
T ss_pred Eeecccccccc-cHHHhcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCE
Confidence 66664221110 000111 00111111 1124699999999999999999999998654
Q ss_pred ---CCcEEEEEecC--------------------------CccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh----
Q 036742 489 ---DSCKLILCCED--------------------------DVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK---- 534 (629)
Q Consensus 489 ---~~~~~ILitN~--------------------------~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k---- 534 (629)
.++.||++||. ...+.++|.+|| .++.|.+|+.+++..++...+.+
T Consensus 156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 35569999998 335788999999 78999999999999988876543
Q ss_pred -----cCCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 036742 535 -----EDFDLSMTFAAKIATKAK---QNLRKAIMALEACK 566 (629)
Q Consensus 535 -----egl~is~e~L~~Ia~~s~---GDiR~AInlLq~~~ 566 (629)
..+.++++++..|++... |++|.+.+.++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~ 275 (311)
T 4fcw_A 236 LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 275 (311)
T ss_dssp HHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHT
T ss_pred HHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHH
Confidence 235689999999999765 99999998888654
No 53
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.70 E-value=1.2e-16 Score=167.97 Aligned_cols=176 Identities=12% Similarity=0.086 Sum_probs=137.8
Q ss_pred HHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHHH
Q 036742 370 LKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEI 449 (629)
Q Consensus 370 Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei 449 (629)
|.+.++.+..+.+|||||+|+||++++..+++.+.+.++. ...+++++.. ... .+++.+
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~--~~~----~~l~~~- 67 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE--------------EHHTFSIDPN--TDW----NAIFSL- 67 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC--------------EEEEEECCTT--CCH----HHHHHH-
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC--------------eeEEEEecCC--CCH----HHHHHH-
Confidence 4455553445678899999999999999999987643210 0013344321 111 122222
Q ss_pred HHHhccCcCCCCeEEEEEccch-hhHHHHHHHHHHHhccCCCcEEEEEecCC------ccchHHHhhcceEeeccCCCHH
Q 036742 450 RDNLAITPEVSNAMIVIYEVDK-AAEHIQYLIKWIMDGYTDSCKLILCCEDD------VDIIESVKTHCKVIKVDPPVTH 522 (629)
Q Consensus 450 ~~~~~~~~~~~~kVIIIDEID~-Ls~~~q~aLlrilEe~~~~~~~ILitN~~------~~I~~aLrSR~~~I~F~ppt~e 522 (629)
...... .+..+||||||+|. ++.+++++|++++|+++.++.||++|+.. ..+.++|.+||.++.|.+++..
T Consensus 68 ~~~~pl--f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~ 145 (343)
T 1jr3_D 68 CQAMSL--FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQA 145 (343)
T ss_dssp HHHHHH--CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTT
T ss_pred hcCcCC--ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHH
Confidence 222222 13467999999999 99999999999999999999999999874 4588999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 036742 523 EIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKAL 568 (629)
Q Consensus 523 ei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~~~~ 568 (629)
++..+|..++.++|+.++++++..|++.++||+|.+++.|+.+...
T Consensus 146 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~ 191 (343)
T 1jr3_D 146 QLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLL 191 (343)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988764
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=9.6e-17 Score=186.50 Aligned_cols=203 Identities=17% Similarity=0.200 Sum_probs=144.4
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.....|+++++|..+++|+|++..++.+.+++.....+++||+||||||||++|+++|+.+.+..... ..
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~----------~l 234 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE----------IL 234 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCT----------TT
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCCh----------hh
Confidence 44567999999999999999999999999999988888999999999999999999999985543211 11
Q ss_pred CCcceEEEec-ccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 423 SSAHHVELNV-NLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 423 sS~~vleIna-s~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
....++.+++ ....| .....++.+...+.. ..+.||||| ...++++.|+..++ ...+.+|++||...
T Consensus 235 ~~~~~~~~~~g~~~~G---~~e~~l~~~~~~~~~---~~~~iLfiD----~~~~~~~~L~~~l~--~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 235 RDKRVMTLDMGTKYRG---EFEDRLKKVMDEIRQ---AGNIILFID----AAIDASNILKPSLA--RGELQCIGATTLDE 302 (758)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHT---CCCCEEEEC----C--------CCCTT--SSSCEEEEECCTTT
T ss_pred cCCeEEEecccccccc---hHHHHHHHHHHHHHh---cCCEEEEEc----CchhHHHHHHHHHh--cCCEEEEeCCChHH
Confidence 1222444444 11111 111223333332222 245699999 44467777887777 45688999999877
Q ss_pred -----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHH
Q 036742 502 -----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQN------LRKAIMALEACK 566 (629)
Q Consensus 502 -----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GD------iR~AInlLq~~~ 566 (629)
.++++|++||..+.|.+|+.+++..+|..++.+ .++.++++++..++..+.+. .+.++.++..++
T Consensus 303 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 303 YRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (758)
T ss_dssp THHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHH
Confidence 589999999999999999999999999987655 67889999999999887654 368888887654
Q ss_pred h
Q 036742 567 A 567 (629)
Q Consensus 567 ~ 567 (629)
.
T Consensus 383 ~ 383 (758)
T 3pxi_A 383 S 383 (758)
T ss_dssp H
T ss_pred H
Confidence 3
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.68 E-value=9.5e-17 Score=189.00 Aligned_cols=209 Identities=16% Similarity=0.157 Sum_probs=144.6
Q ss_pred CchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCC
Q 036742 345 RPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASS 424 (629)
Q Consensus 345 ~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS 424 (629)
...|+++|+|.+|++++|+++.+..+.+++..+..+++||+||||||||++|+++|..+....+.. ....
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~----------~l~~ 226 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE----------GLKG 226 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT----------TSTT
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch----------hhcC
Confidence 356899999999999999999999999999988888999999999999999999999985432210 1112
Q ss_pred cceEEEecccch-hhH--HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--------HHHHHHHHHHHhccCCCcEE
Q 036742 425 AHHVELNVNLQA-NAK--YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--------EHIQYLIKWIMDGYTDSCKL 493 (629)
Q Consensus 425 ~~vleInas~~~-~~k--~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--------~~~q~aLlrilEe~~~~~~~ 493 (629)
..++.+++.... +.. ......++.+...... ...+.||||||+|.+. .++.+.|+.+++. ..+.+
T Consensus 227 ~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~--~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~ 302 (854)
T 1qvr_A 227 KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ--SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRL 302 (854)
T ss_dssp CEEEEECC-----------CHHHHHHHHHHHHHT--TCSSEEEEECCC-------------------HHHHHT--TCCCE
T ss_pred CeEEEeehHHhhccCccchHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEE
Confidence 345666653211 110 0112233333333221 1235699999999996 4556778888874 46778
Q ss_pred EEEecCCc----cchHHHhhcceEeeccCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHccCC------HHHHH
Q 036742 494 ILCCEDDV----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR----KEDFDLSMTFAAKIATKAKQN------LRKAI 559 (629)
Q Consensus 494 ILitN~~~----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~----kegl~is~e~L~~Ia~~s~GD------iR~AI 559 (629)
|++||... .++++|.+||..+.|.+|+.+++..+|..++. ..++.++++++..++..+.|. .++++
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 88888664 36899999999999999999999999987665 457889999999999988653 67888
Q ss_pred HHHHHHHh
Q 036742 560 MALEACKA 567 (629)
Q Consensus 560 nlLq~~~~ 567 (629)
.+++.++.
T Consensus 383 ~lldea~a 390 (854)
T 1qvr_A 383 DLIDEAAA 390 (854)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=5.5e-16 Score=165.20 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=128.4
Q ss_pred CcccccHHHHHHHHHHHH----c--------------------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742 358 NGFICHRHEAQLLKELVV----D--------------------------GNCPHILIKGQSGSGKRALAMALLHEIYGDA 407 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~----~--------------------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~ 407 (629)
++|+|++++++.|..++. . ....++||+||||||||++|+++|+.+ +..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l-~~~ 99 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL-DIP 99 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-TCC
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence 568999999999988872 1 123479999999999999999999987 322
Q ss_pred CCCCCCCccccccccCCcceEEEecccch--h-hHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchhhHH--------
Q 036742 408 CWNEKWPTQVLVPVASSAHHVELNVNLQA--N-AKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKAAEH-------- 475 (629)
Q Consensus 408 ~~~~~~~~~v~~~i~sS~~vleInas~~~--~-~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~Ls~~-------- 475 (629)
++.+++.... + ........+.......... ....+.||||||+|.+...
T Consensus 100 -------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~ 160 (376)
T 1um8_A 100 -------------------IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR 160 (376)
T ss_dssp -------------------EEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----------
T ss_pred -------------------EEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceec
Confidence 3445543211 0 0000111222222211110 1123469999999999877
Q ss_pred ------HHHHHHHHHhccC---------------------CCcEEEEEecC-----------------------------
Q 036742 476 ------IQYLIKWIMDGYT---------------------DSCKLILCCED----------------------------- 499 (629)
Q Consensus 476 ------~q~aLlrilEe~~---------------------~~~~~ILitN~----------------------------- 499 (629)
.++.|+.+++... .++.+|+++|.
T Consensus 161 ~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~ 240 (376)
T 1um8_A 161 DVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQE 240 (376)
T ss_dssp ---CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTT
T ss_pred ccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchh
Confidence 8999999999541 44567777762
Q ss_pred ------------CccchHHHhhcc-eEeeccCCCHHHHHHHHHH----HHH---------hcCCCCCHHHHHHHHHHcc-
Q 036742 500 ------------DVDIIESVKTHC-KVIKVDPPVTHEIMEVLIQ----IAR---------KEDFDLSMTFAAKIATKAK- 552 (629)
Q Consensus 500 ------------~~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~----i~~---------kegl~is~e~L~~Ia~~s~- 552 (629)
...+.++|.+|| .++.|++++.+++..++.. ++. ..++.++++++..|++.+.
T Consensus 241 ~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 320 (376)
T 1um8_A 241 AILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE 320 (376)
T ss_dssp TSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc
Confidence 012568899999 7899999999999988862 211 1245689999999999976
Q ss_pred --CCHHHHHHHHHHHHh
Q 036742 553 --QNLRKAIMALEACKA 567 (629)
Q Consensus 553 --GDiR~AInlLq~~~~ 567 (629)
|++|.+.++|+.+..
T Consensus 321 ~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 321 RKTGARGLRAIIEDFCL 337 (376)
T ss_dssp TTCTGGGHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHH
Confidence 999999999987654
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=1.7e-16 Score=149.42 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=114.6
Q ss_pred cCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccC
Q 036742 344 LRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVAS 423 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~s 423 (629)
....|.++|+|..|++++|++..++.+.+++..+...++||+||||||||++|+++++.+....... ...
T Consensus 8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~----------~~~ 77 (187)
T 2p65_A 8 YSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPD----------SLK 77 (187)
T ss_dssp TEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCT----------TTT
T ss_pred HHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcc----------hhc
Confidence 3456899999999999999999999999999887778999999999999999999999975432100 011
Q ss_pred CcceEEEecccch---hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh---------HHHHHHHHHHHhccCCCc
Q 036742 424 SAHHVELNVNLQA---NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA---------EHIQYLIKWIMDGYTDSC 491 (629)
Q Consensus 424 S~~vleInas~~~---~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls---------~~~q~aLlrilEe~~~~~ 491 (629)
...++.+++.... .........+..+....... ..+.||||||+|.+. ....+.|..+++. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~ 153 (187)
T 2p65_A 78 GRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA--EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GEL 153 (187)
T ss_dssp TCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT--TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCS
T ss_pred CCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc--CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCe
Confidence 2235555542110 00111122233333222211 234699999999996 4567777777764 567
Q ss_pred EEEEEecCCc-----cchHHHhhcceEeeccCCC
Q 036742 492 KLILCCEDDV-----DIIESVKTHCKVIKVDPPV 520 (629)
Q Consensus 492 ~~ILitN~~~-----~I~~aLrSR~~~I~F~ppt 520 (629)
.+|+++|... .++++|++||..+.+.+|+
T Consensus 154 ~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 154 RCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred eEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 8899998765 4789999999999998875
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.67 E-value=1.7e-16 Score=176.15 Aligned_cols=188 Identities=17% Similarity=0.185 Sum_probs=132.9
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 351 KHQPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
.+.+.+|++|+|++.+++.|++++.. ....++||+||||||||++|++||.++ +..
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-~~~---------- 265 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAF---------- 265 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-SSE----------
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-CCC----------
Confidence 45667889999999999999988852 334589999999999999999999986 322
Q ss_pred cccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh
Q 036742 418 LVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD 485 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE 485 (629)
++.+++...... .......++.. |.........||||||||.|. ...++.|++.++
T Consensus 266 ---------fv~vn~~~l~~~~~g~~~~~~~~~---f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 266 ---------FFLINGPEIMSKLAGESESNLRKA---FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp ---------EEEEEHHHHHTSCTTHHHHHHHHH---HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred ---------EEEEEchHhhhhhcchhHHHHHHH---HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh
Confidence 577776321100 00111122222 222222345699999998773 367788999998
Q ss_pred ccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742 486 GYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM 560 (629)
Q Consensus 486 e~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn 560 (629)
... ..+.||++||.+..+++++++ || ..+.|..|+.++..++|...+....+. .+..+..++..+.|.....+.
T Consensus 334 ~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA 412 (489)
T ss_dssp HSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHH
T ss_pred ccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHH
Confidence 543 456788899999999999999 66 469999999999999999887665443 233477888888886554444
Q ss_pred HH
Q 036742 561 AL 562 (629)
Q Consensus 561 lL 562 (629)
.|
T Consensus 413 ~L 414 (489)
T 3hu3_A 413 AL 414 (489)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=1.6e-16 Score=184.35 Aligned_cols=206 Identities=16% Similarity=0.181 Sum_probs=148.7
Q ss_pred ccCchhhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 343 KLRPFWADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 343 ~~~~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
.....|+++++|.+|++++|++..++.+.+++......++||+||||||||++|+++|..+.+..+.. ..
T Consensus 171 ~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~----------~~ 240 (758)
T 1r6b_X 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE----------VM 240 (758)
T ss_dssp SSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCG----------GG
T ss_pred HHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCCh----------hh
Confidence 34456899999999999999999999999999887778999999999999999999999985433210 01
Q ss_pred CCcceEEEecc------cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh---------hHHHHHHHHHHHhcc
Q 036742 423 SSAHHVELNVN------LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA---------AEHIQYLIKWIMDGY 487 (629)
Q Consensus 423 sS~~vleInas------~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L---------s~~~q~aLlrilEe~ 487 (629)
....++.++.. ...+ .....++.+...... ..+.||||||+|.+ ..++.+.|..+++.
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~g---~~e~~l~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~- 313 (758)
T 1r6b_X 241 ADCTIYSLDIGSLLAGTKYRG---DFEKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS- 313 (758)
T ss_dssp TTCEEEECCCC---CCCCCSS---CHHHHHHHHHHHHSS---SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-
T ss_pred cCCEEEEEcHHHHhccccccc---hHHHHHHHHHHHHHh---cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-
Confidence 11223333321 1112 122334444443322 23579999999998 34455666655553
Q ss_pred CCCcEEEEEecCCc-----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC----
Q 036742 488 TDSCKLILCCEDDV-----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK----EDFDLSMTFAAKIATKAKQN---- 554 (629)
Q Consensus 488 ~~~~~~ILitN~~~-----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k----egl~is~e~L~~Ia~~s~GD---- 554 (629)
..+.+|++|+... .++++|.+||..+.|.+|+.+++.++|..++.. .++.++++++..++..+.|.
T Consensus 314 -~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~ 392 (758)
T 1r6b_X 314 -GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_dssp -CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTS
T ss_pred -CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccc
Confidence 5677888888643 367899999999999999999999999887754 67889999999999887653
Q ss_pred --HHHHHHHHHHHH
Q 036742 555 --LRKAIMALEACK 566 (629)
Q Consensus 555 --iR~AInlLq~~~ 566 (629)
...++.+++.+.
T Consensus 393 ~lp~~~i~lld~a~ 406 (758)
T 1r6b_X 393 HLPDKAIDVIDEAG 406 (758)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHH
Confidence 346777776544
No 60
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=6.5e-16 Score=157.15 Aligned_cols=182 Identities=16% Similarity=0.151 Sum_probs=120.4
Q ss_pred CcccccHHHHHHHH-------HHHH---cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcce
Q 036742 358 NGFICHRHEAQLLK-------ELVV---DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHH 427 (629)
Q Consensus 358 ddIiG~e~~~~~Lk-------~~L~---~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~v 427 (629)
+.++|.....+.+. ..+. .....++||+||||||||++|+++|+.+. .. +
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~-~~-------------------~ 92 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN-FP-------------------F 92 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT-CS-------------------E
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-CC-------------------E
Confidence 45667655443333 3443 23345899999999999999999999863 32 4
Q ss_pred EEEeccc-chhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchh----------hHHHHHHHHHHHhcc---CCCcE
Q 036742 428 VELNVNL-QANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKA----------AEHIQYLIKWIMDGY---TDSCK 492 (629)
Q Consensus 428 leInas~-~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~L----------s~~~q~aLlrilEe~---~~~~~ 492 (629)
+.+++.. ..+. .......++.+...+. .....||||||||.| ....++.|..+++.. ...+.
T Consensus 93 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 93 IKICSPDKMIGFSETAKCQAMKKIFDDAY---KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp EEEECGGGCTTCCHHHHHHHHHHHHHHHH---TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred EEEeCHHHhcCCchHHHHHHHHHHHHHHH---hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 5555532 1111 0011122333322221 133569999999998 456677777777743 23455
Q ss_pred EEEEecCCccchH-HHhhcc-eEeeccCCCH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-----CHHHHHHHHHH
Q 036742 493 LILCCEDDVDIIE-SVKTHC-KVIKVDPPVT-HEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-----NLRKAIMALEA 564 (629)
Q Consensus 493 ~ILitN~~~~I~~-aLrSR~-~~I~F~ppt~-eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-----DiR~AInlLq~ 564 (629)
+|++||.++.+++ .+++|+ ..+.|++++. +++..++.. . ..++++.+..|++.+.| ++|+++++++.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---~--~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---L--GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---H--TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh---c--CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 7778888777776 678884 7789988887 666665543 2 24689999999999988 99999999998
Q ss_pred HHh
Q 036742 565 CKA 567 (629)
Q Consensus 565 ~~~ 567 (629)
+..
T Consensus 245 a~~ 247 (272)
T 1d2n_A 245 SLQ 247 (272)
T ss_dssp HTT
T ss_pred Hhh
Confidence 754
No 61
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=1.5e-15 Score=153.75 Aligned_cols=194 Identities=15% Similarity=0.137 Sum_probs=127.4
Q ss_pred CCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 356 SLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 356 tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
+|++|+|+...+..+.+.+.. ....++||+||||||||++|++++..+.... ..++.+++.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~-----------------~~~~~v~~~ 66 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ-----------------GPFISLNCA 66 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT-----------------SCEEEEEGG
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC-----------------CCeEEEecC
Confidence 689999998887777766642 2335799999999999999999998753221 126778875
Q ss_pred cchhhHHHHHH-HHHHHHHHhccC--------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc-----------CCCcEE
Q 036742 434 LQANAKYALMG-LVKEIRDNLAIT--------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-----------TDSCKL 493 (629)
Q Consensus 434 ~~~~~k~~l~~-~lrei~~~~~~~--------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-----------~~~~~~ 493 (629)
..... .+.. ++......+... ....+.+|||||||.+....+..|+++++.. ...+++
T Consensus 67 ~~~~~--~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~i 144 (265)
T 2bjv_A 67 ALNEN--LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (265)
T ss_dssp GSCHH--HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEE
T ss_pred CCChh--HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEE
Confidence 43211 1111 111000000000 0112459999999999999999999999853 246789
Q ss_pred EEEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHHH----HHHHHHhcCC----CCCHHHHHHHHHHc-cC
Q 036742 494 ILCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIMEV----LIQIARKEDF----DLSMTFAAKIATKA-KQ 553 (629)
Q Consensus 494 ILitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~i----L~~i~~kegl----~is~e~L~~Ia~~s-~G 553 (629)
|+++|... .+.++|.+|+. .+.++++.. +++..+ |...+.+.+. .++++++..|.... .|
T Consensus 145 I~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~g 224 (265)
T 2bjv_A 145 VCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPG 224 (265)
T ss_dssp EEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTT
T ss_pred EEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCC
Confidence 99999852 35689999984 577787765 555544 3444555554 67999999998775 89
Q ss_pred CHHHHHHHHHHHHhc
Q 036742 554 NLRKAIMALEACKAL 568 (629)
Q Consensus 554 DiR~AInlLq~~~~~ 568 (629)
++|.+.+.++.+...
T Consensus 225 n~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 225 NIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999976543
No 62
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=5.4e-16 Score=174.08 Aligned_cols=187 Identities=13% Similarity=0.152 Sum_probs=125.3
Q ss_pred CcccccHHHHHHHHHHHH------cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEe
Q 036742 358 NGFICHRHEAQLLKELVV------DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELN 431 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~------~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleIn 431 (629)
++++|+++++..+.+.+. ....++++|+||||||||++|++||..+. .. +..++
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~-------------------~~~i~ 140 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG-RK-------------------FVRIS 140 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT-CE-------------------EEEEC
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC-CC-------------------eEEEE
Confidence 568999999988877664 22344799999999999999999999973 32 23333
Q ss_pred cccchhhH-------HHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH----HHHHHHHHHhccC------------
Q 036742 432 VNLQANAK-------YALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH----IQYLIKWIMDGYT------------ 488 (629)
Q Consensus 432 as~~~~~k-------~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~----~q~aLlrilEe~~------------ 488 (629)
+....... ..+......+...+.... ..+.||||||||.+... .++.|+++++...
T Consensus 141 ~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~-~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 141 LGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAG-KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp CCC--------------------CHHHHHHTTC-SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred ecccchhhhhhhHHHHHhccCchHHHHHHHHhh-ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCee
Confidence 32110000 000011111122222221 22349999999999776 4588888886432
Q ss_pred ---CCcEEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHH-----Hhc-----CCCCCHHHHHHHHHHcc--C
Q 036742 489 ---DSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIA-----RKE-----DFDLSMTFAAKIATKAK--Q 553 (629)
Q Consensus 489 ---~~~~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~-----~ke-----gl~is~e~L~~Ia~~s~--G 553 (629)
.++.||++||..+.++++|++||.++.|++|+.++...++...+ ... .+.++++++..|+..+. |
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred ecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 45789999999999999999999999999999999999888765 222 45678999999887654 6
Q ss_pred CHHHHHHHHHHH
Q 036742 554 NLRKAIMALEAC 565 (629)
Q Consensus 554 DiR~AInlLq~~ 565 (629)
++|.+-+.++.+
T Consensus 300 ~vR~L~~~i~~~ 311 (543)
T 3m6a_A 300 GVRSLERQLAAI 311 (543)
T ss_dssp SSHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 788777766653
No 63
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.65 E-value=1.8e-16 Score=184.39 Aligned_cols=175 Identities=18% Similarity=0.215 Sum_probs=126.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...+|+||+|.+++++.|++++.- | ...+||||||||||||++|++||+++ +..
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-g~~------------ 265 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAF------------ 265 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-TCE------------
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-CCe------------
Confidence 346789999999999999988741 2 23489999999999999999999986 332
Q ss_pred cccCCcceEEEeccc----chhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHH
Q 036742 420 PVASSAHHVELNVNL----QANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIM 484 (629)
Q Consensus 420 ~i~sS~~vleInas~----~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlril 484 (629)
++++++.+ ..+. ....++++ |.......++||||||+|.+. ....+.|+..|
T Consensus 266 -------~~~v~~~~l~sk~~ge---se~~lr~l---F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~m 332 (806)
T 3cf2_A 266 -------FFLINGPEIMSKLAGE---SESNLRKA---FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (806)
T ss_dssp -------EEEEEHHHHHSSCTTH---HHHHHHHH---HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHH
T ss_pred -------EEEEEhHHhhcccchH---HHHHHHHH---HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHH
Confidence 56777642 2221 12333333 333334567899999999983 23556677777
Q ss_pred hccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Q 036742 485 DGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQN 554 (629)
Q Consensus 485 Ee~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GD 554 (629)
+... ..+.+|.+||.++.|+++|++ || ..|+|+.|+.++..++|+.++.+..+. ++..+..|+..+.|-
T Consensus 333 dg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~Gf 406 (806)
T 3cf2_A 333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGH 406 (806)
T ss_dssp HHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSC
T ss_pred hcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCC
Confidence 7554 456788899999999999998 77 479999999999999998766543322 233478888888764
No 64
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.65 E-value=1.7e-15 Score=168.31 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=145.2
Q ss_pred chhhhccCCCCCCcccccHHHHHHHHHHHHc-----------CC-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCC
Q 036742 346 PFWADKHQPSSLNGFICHRHEAQLLKELVVD-----------GN-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKW 413 (629)
Q Consensus 346 ~lW~eKyrP~tfddIiG~e~~~~~Lk~~L~~-----------g~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~ 413 (629)
.+|.+. .+.+|+||+|+++++..|++++.. .. .+++||+||||||||+||++||.++. ..
T Consensus 20 ~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-~~------ 91 (499)
T 2dhr_A 20 RVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VP------ 91 (499)
T ss_dssp EEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-CC------
T ss_pred eeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-CC------
Confidence 445455 778999999999999888887741 11 23799999999999999999999863 22
Q ss_pred CccccccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHH
Q 036742 414 PTQVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYL 479 (629)
Q Consensus 414 ~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~a 479 (629)
++.+++.+..... .......+...|........+|+||||||.+.. ...+.
T Consensus 92 -------------~i~i~g~~~~~~~--~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~ 156 (499)
T 2dhr_A 92 -------------FITASGSDFVEMF--VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 156 (499)
T ss_dssp -------------EEEEEGGGGTSSC--TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH
T ss_pred -------------EEEEehhHHHHhh--hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH
Confidence 4666664221100 001112223334443334457999999998731 23345
Q ss_pred HHHHHhccC--CCcEEEEEecCCccchHHHhhcc---eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHccC
Q 036742 480 IKWIMDGYT--DSCKLILCCEDDVDIIESVKTHC---KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAKQ 553 (629)
Q Consensus 480 LlrilEe~~--~~~~~ILitN~~~~I~~aLrSR~---~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~G 553 (629)
|+..++... ..+.+|.++|.++.+++++.+++ ..+.|..|+.+++.++|+..+. ++.+++++ +..|+..+.|
T Consensus 157 LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G 234 (499)
T 2dhr_A 157 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPG 234 (499)
T ss_dssp HHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCS
T ss_pred HHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCC
Confidence 555555443 33566777888888999999854 4799999999999999986654 34555444 8889999999
Q ss_pred CH-HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Q 036742 554 NL-RKAIMALEACKALNYPFADDQPIPLGWEEVLIEL 589 (629)
Q Consensus 554 Di-R~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~ei 589 (629)
+. |.+.+++..+...+...........++++++..+
T Consensus 235 ~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 235 FVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 88 7888888776554432222234445666655554
No 65
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.65 E-value=3.1e-15 Score=150.41 Aligned_cols=193 Identities=16% Similarity=0.126 Sum_probs=127.3
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
..+.+.+|++|+|.++++..+++++.. ...++++|+|||||||||++++++..+. ..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-~~---------- 76 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VP---------- 76 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-CC----------
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-CC----------
Confidence 456778999999999988888776641 1124799999999999999999999863 22
Q ss_pred cccccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHHH
Q 036742 418 LVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIKW 482 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLlr 482 (629)
++.++....... .......++.+.+... .....++||||+|.+.. ...+.++.
T Consensus 77 ---------~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~ 144 (254)
T 1ixz_A 77 ---------FITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 144 (254)
T ss_dssp ---------EEEEEHHHHHHSCTTHHHHHHHHHHHHHT---TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHH
T ss_pred ---------EEEeeHHHHHHHHhhHHHHHHHHHHHHHH---hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHH
Confidence 455554211000 0011122333333321 22346999999998731 12334444
Q ss_pred HHhccCC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHccCCH-
Q 036742 483 IMDGYTD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAKQNL- 555 (629)
Q Consensus 483 ilEe~~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~GDi- 555 (629)
.++.... ...++.++|.++.+++++++ |+ ..+.|..|+.++..++|+..+.. +.+++++ +..|+..+.|..
T Consensus 145 ~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~ 222 (254)
T 1ixz_A 145 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVG 222 (254)
T ss_dssp HHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCH
T ss_pred HHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCH
Confidence 4543332 23566678999899999998 44 47899999999999999877643 4554443 788999998876
Q ss_pred HHHHHHHHHHHh
Q 036742 556 RKAIMALEACKA 567 (629)
Q Consensus 556 R~AInlLq~~~~ 567 (629)
|.+.++++.+..
T Consensus 223 ~dl~~~~~~a~~ 234 (254)
T 1ixz_A 223 ADLENLLNEAAL 234 (254)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667677765443
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.63 E-value=4.9e-18 Score=171.87 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=125.4
Q ss_pred hccCCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
.++.+.+|++|+|++.+++.|.+++.. ....++||+||||||||++|+++|+++....+ . +
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-~------v 75 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF-S------M 75 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC-C------C
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE-E------e
Confidence 456788999999999998888887751 12347999999999999999999999743321 0 0
Q ss_pred cccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHH---------------HHHHHHH
Q 036742 418 LVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEH---------------IQYLIKW 482 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~---------------~q~aLlr 482 (629)
.+........ ....... ...+..... ....||||||+|.+... .++.|+.
T Consensus 76 ~~~~~~~~~~----~~~~~~~----~~~~~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~ 140 (268)
T 2r62_A 76 GGSSFIEMFV----GLGASRV----RDLFETAKK-------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLA 140 (268)
T ss_dssp CSCTTTTSCS----SSCSSSS----STTHHHHHH-------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTT
T ss_pred chHHHHHhhc----chHHHHH----HHHHHHHHh-------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHH
Confidence 0000000000 0000000 011222111 13469999999999543 2344555
Q ss_pred HHhccC---CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CH
Q 036742 483 IMDGYT---DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NL 555 (629)
Q Consensus 483 ilEe~~---~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-Di 555 (629)
.++... ..+.||+++|.++.+++++.+ |+ ..+.|..|+.+++.++|...+....+. ++..+..|+..+.| ..
T Consensus 141 ~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g 219 (268)
T 2r62_A 141 EMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAG 219 (268)
T ss_dssp TTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCH
T ss_pred HhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCH
Confidence 555432 236788889999889999988 66 578999999999999998877654332 22236667777766 34
Q ss_pred HHHHHHHHHHHhcCC
Q 036742 556 RKAIMALEACKALNY 570 (629)
Q Consensus 556 R~AInlLq~~~~~~~ 570 (629)
|.+.++++.+...+.
T Consensus 220 ~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 220 ADLANIINEAALLAG 234 (268)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666655443
No 67
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.61 E-value=1.5e-14 Score=147.74 Aligned_cols=190 Identities=16% Similarity=0.143 Sum_probs=124.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP 420 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~ 420 (629)
.+.+|++|+|.++++..+++++.. ...++++|+|||||||||++++|+..+. ..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-~~------------- 100 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VP------------- 100 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-CC-------------
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-CC-------------
Confidence 677899999999988888776641 1123699999999999999999999863 22
Q ss_pred ccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHH---Hh
Q 036742 421 VASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWI---MD 485 (629)
Q Consensus 421 i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlri---lE 485 (629)
++.+++.+.... .......+..+.+... .....++||||+|.+.. .....+..+ ++
T Consensus 101 ------~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 101 ------FITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp ------EEEEEHHHHHHSTTTHHHHHHHHHHHHHH---TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred ------EEEecHHHHHHHHhhHHHHHHHHHHHHHH---hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence 455554321000 0011122333333221 12346999999998731 122333333 33
Q ss_pred ccCC--CcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHccCCH-HHH
Q 036742 486 GYTD--SCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTF-AAKIATKAKQNL-RKA 558 (629)
Q Consensus 486 e~~~--~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~-L~~Ia~~s~GDi-R~A 558 (629)
.... ...++.++|.++.+++++.+ |+ ..+.|..|+.++..++|+..+.. +.+++++ +..|+..+.|+. |.+
T Consensus 172 gg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl 249 (278)
T 1iy2_A 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADL 249 (278)
T ss_dssp TCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred CCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHH
Confidence 2222 24566688999999999998 44 47999999999999999877643 4554444 788999999977 566
Q ss_pred HHHHHHHHh
Q 036742 559 IMALEACKA 567 (629)
Q Consensus 559 InlLq~~~~ 567 (629)
.++++.+..
T Consensus 250 ~~l~~~a~~ 258 (278)
T 1iy2_A 250 ENLLNEAAL 258 (278)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666765543
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.60 E-value=1.1e-14 Score=169.12 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=132.5
Q ss_pred CcccccHHHHHHHHHHHHc---C------CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVD---G------NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~---g------~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
.+|+|++++++.|..++.. | ...++||+||||||||++|+++|+.+ +.. ++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-~~~-------------------~~ 517 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIE-------------------LL 517 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-TCE-------------------EE
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-cCC-------------------EE
Confidence 4689999999988888752 1 12379999999999999999999997 332 34
Q ss_pred EEecccch--------------hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC------
Q 036742 429 ELNVNLQA--------------NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT------ 488 (629)
Q Consensus 429 eInas~~~--------------~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~------ 488 (629)
.++++... +........+.+.... ..+.||||||||.+..+.++.|+++++...
T Consensus 518 ~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g 591 (758)
T 1r6b_X 518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNG 591 (758)
T ss_dssp EEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTT
T ss_pred EEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCC
Confidence 44442110 1110000111111111 225699999999999999999999999642
Q ss_pred -----CCcEEEEEecCCc-------------------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhc--
Q 036742 489 -----DSCKLILCCEDDV-------------------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARKE-- 535 (629)
Q Consensus 489 -----~~~~~ILitN~~~-------------------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~ke-- 535 (629)
.++.||++||... .+.++|++|| .++.|++++.+++..++...+.+.
T Consensus 592 ~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~ 671 (758)
T 1r6b_X 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV 671 (758)
T ss_dssp EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 4567999999743 5678999999 789999999999999988876532
Q ss_pred -------CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 036742 536 -------DFDLSMTFAAKIATKA---KQNLRKAIMALEACK 566 (629)
Q Consensus 536 -------gl~is~e~L~~Ia~~s---~GDiR~AInlLq~~~ 566 (629)
.+.+++++++.|++.+ ++++|.+.++++.+.
T Consensus 672 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 672 QLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred HHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 3568999999999876 555888888877654
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=4.8e-15 Score=172.21 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=132.3
Q ss_pred CcccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
++|+|++.+++.|...+.... ..++||+||||||||++|+++|..+++... .++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~-----------------~~i 553 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEE-----------------SMI 553 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTT-----------------CEE
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-----------------ceE
Confidence 568999999999988886321 126999999999999999999999865432 267
Q ss_pred EEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-----------CCCcEEEEEe
Q 036742 429 ELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-----------TDSCKLILCC 497 (629)
Q Consensus 429 eInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-----------~~~~~~ILit 497 (629)
.++++............+.+.... ..+.||||||||.+..+.++.|+++++.. ..++.||++|
T Consensus 554 ~i~~s~~~~~~~~~~~~l~~~~~~------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 554 RIDMSEYMEKHSTSGGQLTEKVRR------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp EEEGGGGCSSCCCC---CHHHHHH------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred EEechhcccccccccchhhHHHHh------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 777753221100000111111111 12459999999999999999999999973 3567899999
Q ss_pred cCCcc------------chHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHH---cc
Q 036742 498 EDDVD------------IIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK---------EDFDLSMTFAAKIATK---AK 552 (629)
Q Consensus 498 N~~~~------------I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k---------egl~is~e~L~~Ia~~---s~ 552 (629)
|.... +.++|.+|| .++.|++|+.+++..++...+.+ ..+.+++++++.|++. ..
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 707 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLE 707 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTT
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCC
Confidence 96443 678999999 89999999999999988876643 2356799999999875 35
Q ss_pred CCHHHHHHHHHH
Q 036742 553 QNLRKAIMALEA 564 (629)
Q Consensus 553 GDiR~AInlLq~ 564 (629)
|++|.+-+.++.
T Consensus 708 ~~~R~L~~~i~~ 719 (758)
T 3pxi_A 708 YGARPLRRAIQK 719 (758)
T ss_dssp TTTTTHHHHHHH
T ss_pred CCChHHHHHHHH
Confidence 777777777764
No 70
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.59 E-value=5e-15 Score=157.18 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=126.7
Q ss_pred CcccccHHHHHHHHHHHH-------------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 358 NGFICHRHEAQLLKELVV-------------DG--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~-------------~g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
+.|+|++.+++.|..++. .. ...++||+||||||||++|++||+.+. ..
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-~~--------------- 78 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-VP--------------- 78 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-CC---------------
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-CC---------------
Confidence 347999999999988883 11 234899999999999999999999973 22
Q ss_pred CCcceEEEecccch---hhHHHHHHHHHHHHHHhccC-cCCCCeEEEEEccchhhHH--------------HHHHHHHHH
Q 036742 423 SSAHHVELNVNLQA---NAKYALMGLVKEIRDNLAIT-PEVSNAMIVIYEVDKAAEH--------------IQYLIKWIM 484 (629)
Q Consensus 423 sS~~vleInas~~~---~~k~~l~~~lrei~~~~~~~-~~~~~kVIIIDEID~Ls~~--------------~q~aLlril 484 (629)
++.+++.... .........+.......... ....+.||||||||.+... .++.|+++|
T Consensus 79 ----~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~l 154 (363)
T 3hws_A 79 ----FTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLI 154 (363)
T ss_dssp ----EEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHH
T ss_pred ----EEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHh
Confidence 5667764211 11111112233332222111 1123459999999999654 899999999
Q ss_pred hc---------------------cCCCcEEEEEecCC----------cc-------------------------------
Q 036742 485 DG---------------------YTDSCKLILCCEDD----------VD------------------------------- 502 (629)
Q Consensus 485 Ee---------------------~~~~~~~ILitN~~----------~~------------------------------- 502 (629)
+. ...+..||++++.. ..
T Consensus 155 eg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l 234 (363)
T 3hws_A 155 EGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 234 (363)
T ss_dssp HCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHH
T ss_pred cCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHH
Confidence 82 12445677777743 11
Q ss_pred ----chHHHhhcceE-eeccCCCHHHHHHHHHH----HH-------HhcC--CCCCHHHHHHHHHH---ccCCHHHHHHH
Q 036742 503 ----IIESVKTHCKV-IKVDPPVTHEIMEVLIQ----IA-------RKED--FDLSMTFAAKIATK---AKQNLRKAIMA 561 (629)
Q Consensus 503 ----I~~aLrSR~~~-I~F~ppt~eei~~iL~~----i~-------~keg--l~is~e~L~~Ia~~---s~GDiR~AInl 561 (629)
+.++|.+|+.. +.|.+|+.+++..++.. ++ ...+ +.+++++++.|++. .++++|.+-+.
T Consensus 235 ~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ 314 (363)
T 3hws_A 235 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSI 314 (363)
T ss_dssp HHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHH
T ss_pred HHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHH
Confidence 57889999964 56999999998888764 22 2123 45799999999865 35677888888
Q ss_pred HHHHHh
Q 036742 562 LEACKA 567 (629)
Q Consensus 562 Lq~~~~ 567 (629)
++.+..
T Consensus 315 ie~~~~ 320 (363)
T 3hws_A 315 VEAALL 320 (363)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.59 E-value=4.5e-16 Score=181.08 Aligned_cols=183 Identities=17% Similarity=0.158 Sum_probs=112.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...+|+||+|.+++++.|++.+.- | ...++|||||||||||++|+++|.++ +..
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~------------ 538 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QAN------------ 538 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-TCE------------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-CCc------------
Confidence 456789999999999999988741 1 23479999999999999999999996 333
Q ss_pred cccCCcceEEEecc----cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH--------------HHHHHHH
Q 036742 420 PVASSAHHVELNVN----LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--------------HIQYLIK 481 (629)
Q Consensus 420 ~i~sS~~vleInas----~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--------------~~q~aLl 481 (629)
++.+..+ .+.|.. +..+++ .|..+....++||||||||.+.. ...+.|+
T Consensus 539 -------f~~v~~~~l~s~~vGes---e~~vr~---lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL 605 (806)
T 3cf2_A 539 -------FISIKGPELLTMWFGES---EANVRE---IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 605 (806)
T ss_dssp -------EEECCHHHHHTTTCSSC---HHHHHH---HHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHH
T ss_pred -------eEEeccchhhccccchH---HHHHHH---HHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHH
Confidence 3444432 111211 122333 23333344568999999999832 1356677
Q ss_pred HHHhccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc----
Q 036742 482 WIMDGYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAK---- 552 (629)
Q Consensus 482 rilEe~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~---- 552 (629)
..|+... ..+.||.+||.++.|+++|++ |+ ..|+|+.|+.++..++|+.++.+..+. .+..+..|++.+.
T Consensus 606 ~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SG 684 (806)
T 3cf2_A 606 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSG 684 (806)
T ss_dssp HHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC---------------
T ss_pred HHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCH
Confidence 7787554 345566789999999999998 88 578899999999999888776554332 2234667776654
Q ss_pred CCHHHHHHHH
Q 036742 553 QNLRKAIMAL 562 (629)
Q Consensus 553 GDiR~AInlL 562 (629)
.||..+++..
T Consensus 685 adi~~l~~~A 694 (806)
T 3cf2_A 685 ADLTEICQRA 694 (806)
T ss_dssp -CHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4776655543
No 72
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.55 E-value=5.2e-14 Score=146.67 Aligned_cols=193 Identities=17% Similarity=0.145 Sum_probs=129.0
Q ss_pred CcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742 358 NGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ 435 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~ 435 (629)
++|+|+......+.+.+.. ....++||+||||||||++|++|+....... ..++.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~-----------------~~~v~v~~~~~ 64 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD-----------------RPLVTLNCAAL 64 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS-----------------SCCCEEECSSC
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC-----------------CCeEEEeCCCC
Confidence 4688988888777777753 3345799999999999999999998752211 12566776432
Q ss_pred hhhHHHHHH-HHHHHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEE
Q 036742 436 ANAKYALMG-LVKEIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLIL 495 (629)
Q Consensus 436 ~~~k~~l~~-~lrei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~IL 495 (629)
... .+.. ++......|.... ...+.+|||||||.|....+..|+++++... ..++||+
T Consensus 65 ~~~--l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 65 NES--LLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp CHH--HHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred ChH--HHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 211 1111 1100000000000 0123599999999999999999999998642 4578999
Q ss_pred EecCCc-------cchHHHhhcce--EeeccCCC--HHHHHHHHHH----HHHhcC---CCCCHHHHHHHHHHc-cCCHH
Q 036742 496 CCEDDV-------DIIESVKTHCK--VIKVDPPV--THEIMEVLIQ----IARKED---FDLSMTFAAKIATKA-KQNLR 556 (629)
Q Consensus 496 itN~~~-------~I~~aLrSR~~--~I~F~ppt--~eei~~iL~~----i~~keg---l~is~e~L~~Ia~~s-~GDiR 556 (629)
+||..- .+.+.|.+|+. .+.++++. .+++..++.. .+.+.+ ..++++++..|.... .||+|
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvR 222 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIR 222 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHH
T ss_pred ecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHH
Confidence 999752 25678888974 46677776 4555554444 333333 568999999999987 89999
Q ss_pred HHHHHHHHHHhcC
Q 036742 557 KAIMALEACKALN 569 (629)
Q Consensus 557 ~AInlLq~~~~~~ 569 (629)
.+.+.++.+....
T Consensus 223 eL~~~l~~~~~~~ 235 (304)
T 1ojl_A 223 ELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999876643
No 73
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=1.2e-13 Score=147.05 Aligned_cols=201 Identities=18% Similarity=0.175 Sum_probs=132.0
Q ss_pred hccCCCCCCcccccHHHHHHHHHHH-H---cC---CCCeEEE--EcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccc
Q 036742 350 DKHQPSSLNGFICHRHEAQLLKELV-V---DG---NCPHILI--KGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVP 420 (629)
Q Consensus 350 eKyrP~tfddIiG~e~~~~~Lk~~L-~---~g---~~p~ILL--~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~ 420 (629)
..|.| ++++|.+..++.|..++ . .+ ...+++| +||+|+|||++|+++++.+......
T Consensus 17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~----------- 82 (412)
T 1w5s_A 17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAK----------- 82 (412)
T ss_dssp TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHH-----------
T ss_pred CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhc-----------
Confidence 45666 78999999888888887 4 23 4457889 9999999999999999887431000
Q ss_pred ccCCcceEEEecccchhhHHHHHHHHHH------------------HHHHhccCcCCCCeEEEEEccchhhH------HH
Q 036742 421 VASSAHHVELNVNLQANAKYALMGLVKE------------------IRDNLAITPEVSNAMIVIYEVDKAAE------HI 476 (629)
Q Consensus 421 i~sS~~vleInas~~~~~k~~l~~~lre------------------i~~~~~~~~~~~~kVIIIDEID~Ls~------~~ 476 (629)
......++.+++........++..++.. +...+. ......||||||+|.+.. +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~llvlDe~~~l~~~~~~~~~~ 160 (412)
T 1w5s_A 83 EGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY--VENHYLLVILDEFQSMLSSPRIAAED 160 (412)
T ss_dssp TTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH--HHTCEEEEEEESTHHHHSCTTSCHHH
T ss_pred cCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH--hcCCeEEEEEeCHHHHhhccCcchHH
Confidence 0000125666653222222122222111 111111 112345999999999853 55
Q ss_pred HHHHHHHHhccC-----CCcEEEEEecCCcc---ch---HHHhhcc-eEeeccCCCHHHHHHHHHHHHHhcC--CCCCHH
Q 036742 477 QYLIKWIMDGYT-----DSCKLILCCEDDVD---II---ESVKTHC-KVIKVDPPVTHEIMEVLIQIARKED--FDLSMT 542 (629)
Q Consensus 477 q~aLlrilEe~~-----~~~~~ILitN~~~~---I~---~aLrSR~-~~I~F~ppt~eei~~iL~~i~~keg--l~is~e 542 (629)
...|.+.++... ..+.+|++++.... +. +.+.+++ ..+.|.+++.+++.++|...+...+ ..++++
T Consensus 161 l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~ 240 (412)
T 1w5s_A 161 LYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR 240 (412)
T ss_dssp HHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHH
T ss_pred HHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChH
Confidence 666666666543 45668888876542 33 5566665 3499999999999999988765432 257899
Q ss_pred HHHHHHHHcc------CCHHHHHHHHHHHH
Q 036742 543 FAAKIATKAK------QNLRKAIMALEACK 566 (629)
Q Consensus 543 ~L~~Ia~~s~------GDiR~AInlLq~~~ 566 (629)
++..|++.+. |++|.+++++..+.
T Consensus 241 ~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~ 270 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDGSARRAIVALKMAC 270 (412)
T ss_dssp HHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 9999999999 99999999987643
No 74
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.54 E-value=6e-14 Score=159.26 Aligned_cols=211 Identities=11% Similarity=0.115 Sum_probs=135.7
Q ss_pred hhhccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc-CCcc
Q 036742 348 WADKHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA-SSAH 426 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~-sS~~ 426 (629)
...+|+|..|++++|++.+++.+...+..|. +++|+|||||||||+|++|++.+....... ..+..... ....
T Consensus 31 ~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~----~~~~~~~~~~~~p 104 (604)
T 3k1j_A 31 EEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLED----ILVFPNPEDENMP 104 (604)
T ss_dssp GGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEE----EEEECCTTCTTSC
T ss_pred CcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCe----EEEeCCcccccCC
Confidence 3478999999999999999999999999874 799999999999999999999864322100 00000000 0000
Q ss_pred eEEEecccchhhHHHHHHHH----------------------------------------------HHHHHHhcc-----
Q 036742 427 HVELNVNLQANAKYALMGLV----------------------------------------------KEIRDNLAI----- 455 (629)
Q Consensus 427 vleInas~~~~~k~~l~~~l----------------------------------------------rei~~~~~~----- 455 (629)
.+.+.+. ... . .+.+.. .++......
T Consensus 105 ~i~~~p~-g~~-~-~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~ 181 (604)
T 3k1j_A 105 RIKTVPA-CQG-R-RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS 181 (604)
T ss_dssp EEEEEET-THH-H-HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred cEEEEec-chH-H-HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence 1111110 000 0 000000 000000000
Q ss_pred --C-------------cCCCCeEEEEEccchhhHHHHHHHHHHHhcc---------------------CCCcEEEEEecC
Q 036742 456 --T-------------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY---------------------TDSCKLILCCED 499 (629)
Q Consensus 456 --~-------------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~---------------------~~~~~~ILitN~ 499 (629)
. ....+.+|||||++.|....++.|++.|+.. +.+++||+++|.
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~ 261 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNL 261 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECH
T ss_pred CCccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCH
Confidence 0 0012349999999999999999999999832 135679999997
Q ss_pred C--ccchHHHhhcc----eEeeccCC---CHHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHc---cC-------CH
Q 036742 500 D--VDIIESVKTHC----KVIKVDPP---VTHEIMEVLIQIARK-----EDFDLSMTFAAKIATKA---KQ-------NL 555 (629)
Q Consensus 500 ~--~~I~~aLrSR~----~~I~F~pp---t~eei~~iL~~i~~k-----egl~is~e~L~~Ia~~s---~G-------Di 555 (629)
. ..++++|++|| ..+.|... ..+.+..++..++.. ....++++++..|++.+ .| +.
T Consensus 262 ~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~ 341 (604)
T 3k1j_A 262 DTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRL 341 (604)
T ss_dssp HHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCH
T ss_pred HHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCH
Confidence 6 56899999999 45666432 445566666555443 22578999999998876 45 59
Q ss_pred HHHHHHHHHHHh
Q 036742 556 RKAIMALEACKA 567 (629)
Q Consensus 556 R~AInlLq~~~~ 567 (629)
|.+.++++.+..
T Consensus 342 R~l~~llr~A~~ 353 (604)
T 3k1j_A 342 RDLGGIVRAAGD 353 (604)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.54 E-value=2e-13 Score=141.34 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=96.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhh-HHHHHHHHHHHHHHh-ccCc
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANA-KYALMGLVKEIRDNL-AITP 457 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~-~~~~ 457 (629)
.++|||||||||||++|++||+++ +.. ++.++++..... .......+++..... ....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l-~~~-------------------~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~ 96 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM-GIN-------------------PIMMSAGELESGNAGEPAKLIRQRYREAAEIIR 96 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH-TCC-------------------CEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCC-------------------EEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh
Confidence 379999999999999999999998 443 466666321110 001112222222221 1112
Q ss_pred CCCCeEEEEEccchhhH-------------HHHHHHHHHHhc-------------cCCCcEEEEEecCCccchHHHhh--
Q 036742 458 EVSNAMIVIYEVDKAAE-------------HIQYLIKWIMDG-------------YTDSCKLILCCEDDVDIIESVKT-- 509 (629)
Q Consensus 458 ~~~~kVIIIDEID~Ls~-------------~~q~aLlrilEe-------------~~~~~~~ILitN~~~~I~~aLrS-- 509 (629)
...++||||||||.+.. ..++.|+.+++. ....+.||+|||.++.+++++++
T Consensus 97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~ 176 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 176 (293)
T ss_dssp TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHH
T ss_pred cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCC
Confidence 34567999999998844 245788888762 22467899999999999999986
Q ss_pred cceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CH
Q 036742 510 HCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQ-NL 555 (629)
Q Consensus 510 R~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~G-Di 555 (629)
|+..+.+ .|+.++..++++.++...++ +.+.+..++....| ++
T Consensus 177 R~d~~i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l 220 (293)
T 3t15_A 177 RMEKFYW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSI 220 (293)
T ss_dssp HEEEEEE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCH
T ss_pred CCceeEe-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccH
Confidence 6654334 46999999999988876654 56666666665544 44
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.52 E-value=3.2e-14 Score=167.59 Aligned_cols=189 Identities=11% Similarity=0.148 Sum_probs=133.1
Q ss_pred CcccccHHHHHHHHHHHHcCC---------CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceE
Q 036742 358 NGFICHRHEAQLLKELVVDGN---------CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~---------~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
++|+|++.+++.|...+.... ..++||+||||||||++|++|+..+.+... .++
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~-----------------~~i 620 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE-----------------AMI 620 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGG-----------------GEE
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCC-----------------cEE
Confidence 568999999999988886321 137999999999999999999999865321 245
Q ss_pred EEecccchh---hHHHH--------HHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC---------
Q 036742 429 ELNVNLQAN---AKYAL--------MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT--------- 488 (629)
Q Consensus 429 eInas~~~~---~k~~l--------~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~--------- 488 (629)
.++++.... ...++ .+..+.+...... ..+.||||||||.+..+.++.|+++++...
T Consensus 621 ~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 621 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp EECTTTCCSSGGGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred EEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEe
Confidence 555532110 00000 0000111111111 124699999999999999999999999642
Q ss_pred --CCcEEEEEecCC--------------------------ccchHHHhhcc-eEeeccCCCHHHHHHHHHHHHHh-----
Q 036742 489 --DSCKLILCCEDD--------------------------VDIIESVKTHC-KVIKVDPPVTHEIMEVLIQIARK----- 534 (629)
Q Consensus 489 --~~~~~ILitN~~--------------------------~~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~k----- 534 (629)
.++.||++||.. ..+.++|.+|| .++.|.|++.+++..++...+.+
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 355689999962 12457888999 78899999999999888776542
Q ss_pred ----cCCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 036742 535 ----EDFDLSMTFAAKIATKAK---QNLRKAIMALEACK 566 (629)
Q Consensus 535 ----egl~is~e~L~~Ia~~s~---GDiR~AInlLq~~~ 566 (629)
..+.+++++++.|+..+. |++|.+.+.++.+.
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~ 816 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 816 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHT
T ss_pred HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Confidence 134689999999999875 99999998887653
No 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.49 E-value=2.7e-13 Score=139.34 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=107.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHH----------c---CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 353 QPSSLNGFICHRHEAQLLKELVV----------D---GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~----------~---g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
...+|+||+|.+++++.|++.+. . ...++++|+||||||||++|++||.++ +..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~~~------------ 71 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-GLN------------ 71 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-TCE------------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-CCC------------
Confidence 34678999999999999988652 1 122479999999999999999999986 332
Q ss_pred cccCCcceEEEecccchhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-----------HHHHHHHHHHhcc
Q 036742 420 PVASSAHHVELNVNLQANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-----------HIQYLIKWIMDGY 487 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-----------~~q~aLlrilEe~ 487 (629)
++.++....... .......++.+.+.. ......|+|+||+|.+.. ...+.+...|+..
T Consensus 72 -------~i~i~g~~l~~~~~~~~~~~i~~vf~~a---~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg 141 (274)
T 2x8a_A 72 -------FISVKGPELLNMYVGESERAVRQVFQRA---KNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL 141 (274)
T ss_dssp -------EEEEETTTTCSSTTHHHHHHHHHHHHHH---HHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC
T ss_pred -------EEEEEcHHHHhhhhhHHHHHHHHHHHHH---HhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc
Confidence 355554221100 001122233333221 122346999999998731 1233444445433
Q ss_pred C--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHH
Q 036742 488 T--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKE-DFDLS-MTFAAKIATK 550 (629)
Q Consensus 488 ~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~ke-gl~is-~e~L~~Ia~~ 550 (629)
. ..+.++.++|.++.|++++++ |+ ..|.|+.|+.++..++|+.++... ...+. +..+..|+..
T Consensus 142 ~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~ 211 (274)
T 2x8a_A 142 EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211 (274)
T ss_dssp CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTC
T ss_pred cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHh
Confidence 2 234566789999999999998 77 578899999999999998876542 22222 2236666653
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.49 E-value=4.8e-13 Score=148.73 Aligned_cols=203 Identities=12% Similarity=0.100 Sum_probs=128.1
Q ss_pred CcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchh
Q 036742 358 NGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQAN 437 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~ 437 (629)
..|+|++++++.+...+..+. ++||+||||||||++|++||..+..... +..+++....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~~~------------------f~~~~~~~~t- 80 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARA------------------FEYLMTRFST- 80 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSCCE------------------EEEECCTTCC-
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhhhH------------------HHHHHHhcCC-
Confidence 678999999999988888764 8999999999999999999997622111 1222221000
Q ss_pred hHHHHHH-HHHHH--HHHhccCcCC---CCeEEEEEccchhhHHHHHHHHHHHhccC---------CCcE-EEEEecCCc
Q 036742 438 AKYALMG-LVKEI--RDNLAITPEV---SNAMIVIYEVDKAAEHIQYLIKWIMDGYT---------DSCK-LILCCEDDV 501 (629)
Q Consensus 438 ~k~~l~~-~lrei--~~~~~~~~~~---~~kVIIIDEID~Ls~~~q~aLlrilEe~~---------~~~~-~ILitN~~~ 501 (629)
...++.. ..... ...+.....+ ...|||||||+.+....++.|+..|++.. ...+ +|++||...
T Consensus 81 ~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp 160 (500)
T 3nbx_X 81 PEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP 160 (500)
T ss_dssp HHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC
T ss_pred HHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC
Confidence 0000000 00000 1111111111 34599999999999999999999997432 1223 478888644
Q ss_pred c---chHHHhhcce-EeeccCCCH-HHHHHHHHHHH-----------------------HhcCCCCCHHHHHHHHHHc--
Q 036742 502 D---IIESVKTHCK-VIKVDPPVT-HEIMEVLIQIA-----------------------RKEDFDLSMTFAAKIATKA-- 551 (629)
Q Consensus 502 ~---I~~aLrSR~~-~I~F~ppt~-eei~~iL~~i~-----------------------~kegl~is~e~L~~Ia~~s-- 551 (629)
. +.+++.+|+. .+.+++|+. ++...+|...+ .-.++.++++++++|++..
T Consensus 161 e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~ 240 (500)
T 3nbx_X 161 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQ 240 (500)
T ss_dssp CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHH
Confidence 3 5679999984 478888887 55666665432 1235778999999998776
Q ss_pred --------cCCHHHHHHHHHHHHhcCCCCCCCCCCchh
Q 036742 552 --------KQNLRKAIMALEACKALNYPFADDQPIPLG 581 (629)
Q Consensus 552 --------~GDiR~AInlLq~~~~~~~~~~~~~~~~~~ 581 (629)
..+.|.++.++..+.+.+.....+...+.+
T Consensus 241 lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eD 278 (500)
T 3nbx_X 241 LDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVD 278 (500)
T ss_dssp HHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGG
T ss_pred hhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchH
Confidence 457899888887665544433333334443
No 79
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.43 E-value=1.2e-12 Score=143.39 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=77.3
Q ss_pred eEEEEEccchhh------------HHHHHHHHHHHhcc----------CCCcEEEEEe----cCCccchHHHhhcceE-e
Q 036742 462 AMIVIYEVDKAA------------EHIQYLIKWIMDGY----------TDSCKLILCC----EDDVDIIESVKTHCKV-I 514 (629)
Q Consensus 462 kVIIIDEID~Ls------------~~~q~aLlrilEe~----------~~~~~~ILit----N~~~~I~~aLrSR~~~-I 514 (629)
.||++||+|.+. .++|.+|++++|.. .+++.||+++ ..+..++++|++|+-+ +
T Consensus 252 ~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i 331 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 331 (444)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceee
Confidence 399999999994 24788999999952 4556677776 2345577999999966 8
Q ss_pred eccCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHHc--------cCCHHHHHHHHHHH
Q 036742 515 KVDPPVTHEIMEVLIQ-----------IARKED--FDLSMTFAAKIATKA--------KQNLRKAIMALEAC 565 (629)
Q Consensus 515 ~F~ppt~eei~~iL~~-----------i~~keg--l~is~e~L~~Ia~~s--------~GDiR~AInlLq~~ 565 (629)
.|++|+.+++..|+.. .+..++ +.++++++..|++.+ +...|.+-+.++.+
T Consensus 332 ~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~ 403 (444)
T 1g41_A 332 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL 403 (444)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHH
Confidence 9999999999999831 222233 467899999999862 46677777766653
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.38 E-value=7.6e-13 Score=155.00 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=127.3
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 351 KHQPSSLNGFICHRHEAQLLKELVVD-------------GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk~~L~~-------------g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
.+.+.+|+||+|++.+++.|++++.. ....++||+||||||||++|++||.++ +..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-~~~---------- 265 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAF---------- 265 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-TCE----------
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-CCc----------
Confidence 45678899999999999999988863 223479999999999999999999985 322
Q ss_pred cccccCCcceEEEecccchh-hHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh-----------HHHHHHHHHHHh
Q 036742 418 LVPVASSAHHVELNVNLQAN-AKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA-----------EHIQYLIKWIMD 485 (629)
Q Consensus 418 ~~~i~sS~~vleInas~~~~-~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls-----------~~~q~aLlrilE 485 (629)
++.+++....+ ........++.+.+... .....+|||||+|.+. ...++.|+.+++
T Consensus 266 ---------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~---~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 266 ---------FFLINGPEIMSKLAGESESNLRKAFEEAE---KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp ---------EEEEEHHHHSSSSTTHHHHHHHHHHHHHH---HHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred ---------EEEEEchHhhhhhhhhHHHHHHHHHHHHH---hcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhh
Confidence 46666632110 00011222333322221 1234699999998873 245677778887
Q ss_pred ccC--CCcEEEEEecCCccchHHHhh--cc-eEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 036742 486 GYT--DSCKLILCCEDDVDIIESVKT--HC-KVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIM 560 (629)
Q Consensus 486 e~~--~~~~~ILitN~~~~I~~aLrS--R~-~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AIn 560 (629)
... ..+.+|++||.++.+++++++ |+ ..+.+..|+.++..++|..++.+..+. .+..+..++..+.|.....+.
T Consensus 334 g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~ 412 (806)
T 1ypw_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp SSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHH
T ss_pred hhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHH
Confidence 543 456788899999999999988 77 568999999999999998776654332 223466777777776544433
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=3.1e-13 Score=153.33 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=97.4
Q ss_pred CcccccHHHHHHHHHHHHcCCCC-----------eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcc
Q 036742 358 NGFICHRHEAQLLKELVVDGNCP-----------HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAH 426 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~~g~~p-----------~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~ 426 (629)
..|+|+++++..|.-++..|..+ |+||+||||||||++|+++|+.+. ...+. ........+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~-r~~~~------~~~~~~~~~l 367 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP-RAVYT------TGKGSTAAGL 367 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS-CEECC------CTTCSTTTTS
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC-Cceec------CCCccccccc
Confidence 57899999988887777666311 799999999999999999998752 21100 0000001111
Q ss_pred eEEEecccchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-------------CCcEE
Q 036742 427 HVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-------------DSCKL 493 (629)
Q Consensus 427 vleInas~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-------------~~~~~ 493 (629)
...+......+.... . -..+. ...+.||||||+|.+....+++|+..||... ..+.|
T Consensus 368 ~~~~~~~~~~g~~~~-~--~G~l~-------~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 368 TAAVVREKGTGEYYL-E--AGALV-------LADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp EEECSSGGGTSSCSE-E--ECHHH-------HHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred cceeeeccccccccc-c--CCeeE-------ecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 111000000000000 0 00000 0123599999999999999999999998532 34668
Q ss_pred EEEecCCc-------------cchHHHhhcc-eEeeccCCCHHHHHHHHHHHHH
Q 036742 494 ILCCEDDV-------------DIIESVKTHC-KVIKVDPPVTHEIMEVLIQIAR 533 (629)
Q Consensus 494 ILitN~~~-------------~I~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~ 533 (629)
|+++|... .+.++|.+|| .++.+.+++..+...++..++.
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~ 491 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILD 491 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999865 7889999999 5555655555444455555443
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.34 E-value=5.1e-12 Score=117.02 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=88.6
Q ss_pred cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742 359 GFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA 436 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~ 436 (629)
+|+|+...++.+.+.+.. ....++||+||||||||++|++|+....... ..++ +++....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~-----------------~~~v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ-----------------GEFV-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT-----------------SCCE-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC-----------------CCEE-EECCCCC
Confidence 678988888877777752 3345799999999999999999998642211 1144 6664221
Q ss_pred hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc-------cchHHHhh
Q 036742 437 NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV-------DIIESVKT 509 (629)
Q Consensus 437 ~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~-------~I~~aLrS 509 (629)
... ......... .+.+|||||+|.+....+..|+.+++.....+++|++||... .+.+.|..
T Consensus 64 ~~~-----~~~~~~~~a------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~ 132 (145)
T 3n70_A 64 NAP-----QLNDFIALA------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
T ss_dssp TSS-----CHHHHHHHH------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHH
T ss_pred cch-----hhhcHHHHc------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHH
Confidence 110 011111111 235899999999999999999999988778899999999753 24566777
Q ss_pred cce--EeeccCC
Q 036742 510 HCK--VIKVDPP 519 (629)
Q Consensus 510 R~~--~I~F~pp 519 (629)
|+. .|.++|+
T Consensus 133 rl~~~~i~lPpL 144 (145)
T 3n70_A 133 CFAMTQIACLPL 144 (145)
T ss_dssp HHHHHEEECCCC
T ss_pred HhcCCEEeCCCC
Confidence 753 4555554
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=1.4e-11 Score=117.37 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=82.7
Q ss_pred hhccCCCCCCcccc----cHHHHHHHHHHHHcCC---CCeEEEEcCCCCcHHHHHHHHHHHHh---CCCCCCCCCCcccc
Q 036742 349 ADKHQPSSLNGFIC----HRHEAQLLKELVVDGN---CPHILIKGQSGSGKRALAMALLHEIY---GDACWNEKWPTQVL 418 (629)
Q Consensus 349 ~eKyrP~tfddIiG----~e~~~~~Lk~~L~~g~---~p~ILL~GPPGtGKTtLAraLAkeL~---g~~~~~~~~~~~v~ 418 (629)
+++|++.+|+++++ ++.+++.+++++..-. ...++|+||+||||||++++++..+. |..
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~----------- 69 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR----------- 69 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----------
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----------
Confidence 36899999999986 4567777788876432 34799999999999999999999874 221
Q ss_pred ccccCCcceEEEecccchhhHHHHHHHHHHHHHHhccC----cCCCCeEEEEEccc--hhhHHHHHHHHHHHhcc-CCCc
Q 036742 419 VPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAIT----PEVSNAMIVIYEVD--KAAEHIQYLIKWIMDGY-TDSC 491 (629)
Q Consensus 419 ~~i~sS~~vleInas~~~~~k~~l~~~lrei~~~~~~~----~~~~~kVIIIDEID--~Ls~~~q~aLlrilEe~-~~~~ 491 (629)
++.++.... + +.+.......... ......||||||++ .+.......|..+++.. ..+.
T Consensus 70 --------~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~ 134 (180)
T 3ec2_A 70 --------GYFFDTKDL------I-FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLK 134 (180)
T ss_dssp --------CCEEEHHHH------H-HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred --------EEEEEHHHH------H-HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCC
Confidence 233333211 0 1111111100000 00123599999998 46677777777777643 3567
Q ss_pred EEEEEecCCcc
Q 036742 492 KLILCCEDDVD 502 (629)
Q Consensus 492 ~~ILitN~~~~ 502 (629)
.+|++||....
T Consensus 135 ~ii~tsn~~~~ 145 (180)
T 3ec2_A 135 STIITTNYSLQ 145 (180)
T ss_dssp EEEEECCCCSC
T ss_pred CEEEEcCCChh
Confidence 89999998754
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.30 E-value=1.7e-14 Score=168.89 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=107.2
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHc-----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccc
Q 036742 351 KHQPSSLNGFICHRHEAQLLKELVVD-----------G--NCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQV 417 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk~~L~~-----------g--~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v 417 (629)
.....+|++++|.+++++.|.+++.. + ...++||+||||||||++|++||.++. ..+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-~~~--------- 539 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANF--------- 539 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-CCC---------
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-CCE---------
Confidence 44567889999999999999988752 1 233799999999999999999999973 322
Q ss_pred cccccCCcceEEEeccc----chhh-HHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhh--------------HHHHH
Q 036742 418 LVPVASSAHHVELNVNL----QANA-KYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAA--------------EHIQY 478 (629)
Q Consensus 418 ~~~i~sS~~vleInas~----~~~~-k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls--------------~~~q~ 478 (629)
+.+++.. ..+. ...+..++..... ...+||||||||.+. ...++
T Consensus 540 ----------i~v~~~~l~~~~~g~~~~~i~~~f~~a~~-------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~ 602 (806)
T 1ypw_A 540 ----------ISIKGPELLTMWFGESEANVREIFDKARQ-------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 602 (806)
T ss_dssp ----------CCCCCSSSTTCCTTTSSHHHHHHHHHHHH-------HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHH
T ss_pred ----------EEEechHhhhhhcCccHHHHHHHHHHHHh-------cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHH
Confidence 2222211 1111 1112223332222 123599999999972 22345
Q ss_pred HHHHHHhcc--CCCcEEEEEecCCccchHHHhh--cce-EeeccCCCHHHHHHHHHHHHHhc
Q 036742 479 LIKWIMDGY--TDSCKLILCCEDDVDIIESVKT--HCK-VIKVDPPVTHEIMEVLIQIARKE 535 (629)
Q Consensus 479 aLlrilEe~--~~~~~~ILitN~~~~I~~aLrS--R~~-~I~F~ppt~eei~~iL~~i~~ke 535 (629)
.|+..|+.. ...+.||++||.++.|++++++ ||. .+.|+.|+.++...+|+..+.+.
T Consensus 603 ~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 603 QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp HHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred HHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 555555533 2456788899999999999998 985 89999999999999998776543
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.27 E-value=3.9e-12 Score=117.62 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=86.7
Q ss_pred cccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccch
Q 036742 359 GFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQA 436 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~ 436 (629)
+++|+...++.+.+.+.. ....++||+||||||||++|++++... + . ++.+++....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~-~-~-------------------~~~~~~~~~~ 63 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG-T-P-------------------WVSPARVEYL 63 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT-S-C-------------------EECCSSTTHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC-C-C-------------------eEEechhhCC
Confidence 578888888777777652 334579999999999999999998764 2 1 5666664321
Q ss_pred hhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc-CCCcEEEEEecCCc-c----chHHHhhc
Q 036742 437 NAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY-TDSCKLILCCEDDV-D----IIESVKTH 510 (629)
Q Consensus 437 ~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~-~~~~~~ILitN~~~-~----I~~aLrSR 510 (629)
. .......... .+.+|||||+|.+....+..|+++++.. ...+++|++||... . +.+.|..|
T Consensus 64 ~------~~~~~~~~~a------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~r 131 (143)
T 3co5_A 64 I------DMPMELLQKA------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGL 131 (143)
T ss_dssp H------HCHHHHHHHT------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHH
T ss_pred h------HhhhhHHHhC------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHH
Confidence 1 1112222211 2359999999999999999999999865 35688999998642 2 55667777
Q ss_pred ce--EeeccCC
Q 036742 511 CK--VIKVDPP 519 (629)
Q Consensus 511 ~~--~I~F~pp 519 (629)
+. .+.++++
T Consensus 132 l~~~~i~lPpL 142 (143)
T 3co5_A 132 FSESVVRIPPL 142 (143)
T ss_dssp SSSEEEEECCC
T ss_pred hcCcEEeCCCC
Confidence 64 4555553
No 86
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.26 E-value=2.3e-10 Score=118.35 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=123.6
Q ss_pred CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
|..-+.++|.+..++.|..++..+ +.++|+||+|+|||++++.+++.+ + ++.+++.
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-~---------------------~~~~~~~ 63 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-P---------------------GILIDCR 63 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-S---------------------EEEEEHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-C---------------------cEEEEee
Confidence 344578999999999999999876 689999999999999999999874 2 2333331
Q ss_pred cch------hhHHHH-----------------------------------HHHHHHHHHHhccCcCCCCeEEEEEccchh
Q 036742 434 LQA------NAKYAL-----------------------------------MGLVKEIRDNLAITPEVSNAMIVIYEVDKA 472 (629)
Q Consensus 434 ~~~------~~k~~l-----------------------------------~~~lrei~~~~~~~~~~~~kVIIIDEID~L 472 (629)
... .....+ .+.+..+..... ...+.||||||++.+
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~vlvlDe~~~~ 140 (350)
T 2qen_A 64 ELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE---ELGEFIVAFDEAQYL 140 (350)
T ss_dssp HHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH---HHSCEEEEEETGGGG
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh---ccCCEEEEEeCHHHH
Confidence 110 000000 111111111000 002469999999998
Q ss_pred hH-------HHHHHHHHHHhccCCCcEEEEEecCCccc---------hHHHhhcc-eEeeccCCCHHHHHHHHHHHHHhc
Q 036742 473 AE-------HIQYLIKWIMDGYTDSCKLILCCEDDVDI---------IESVKTHC-KVIKVDPPVTHEIMEVLIQIARKE 535 (629)
Q Consensus 473 s~-------~~q~aLlrilEe~~~~~~~ILitN~~~~I---------~~aLrSR~-~~I~F~ppt~eei~~iL~~i~~ke 535 (629)
.. +....|..+++.. ..+.+|+++.....+ ..++..|. ..+.+.+++.++..+++...+...
T Consensus 141 ~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 141 RFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp GGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred hccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 63 5566777776654 467888887643211 12233344 589999999999999999887777
Q ss_pred CCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 036742 536 DFDLSMTFAAKIATKAKQNLRKAIMALEA 564 (629)
Q Consensus 536 gl~is~e~L~~Ia~~s~GDiR~AInlLq~ 564 (629)
+..++++.+..|+..++|+...+..++..
T Consensus 220 ~~~~~~~~~~~i~~~tgG~P~~l~~~~~~ 248 (350)
T 2qen_A 220 NLDVPENEIEEAVELLDGIPGWLVVFGVE 248 (350)
T ss_dssp TCCCCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88889999999999999999765444443
No 87
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.15 E-value=1.5e-09 Score=112.23 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=117.7
Q ss_pred CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742 355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL 434 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~ 434 (629)
...+.++|.+..++.|.. +.. +.++|+||+|+|||++++.+++.+... ++.+++..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~--------------------~~~~~~~~ 65 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLP--------------------YIYLDLRK 65 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCC--------------------EEEEEGGG
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCC--------------------EEEEEchh
Confidence 345789999999999998 765 689999999999999999999986321 23333321
Q ss_pred c--------hhhHHHHHHH---------------------------------------HHHHHHHhccCcCCCCeEEEEE
Q 036742 435 Q--------ANAKYALMGL---------------------------------------VKEIRDNLAITPEVSNAMIVIY 467 (629)
Q Consensus 435 ~--------~~~k~~l~~~---------------------------------------lrei~~~~~~~~~~~~kVIIID 467 (629)
. ...-..+.+. +..+...+..... .+.|||||
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlD 144 (357)
T 2fna_A 66 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLD 144 (357)
T ss_dssp GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEE
T ss_pred hccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEE
Confidence 0 0000000111 1111111111111 25699999
Q ss_pred ccchhhH----HHHHHHHHHHhccCCCcEEEEEecCCccch---------HHHhhcc-eEeeccCCCHHHHHHHHHHHHH
Q 036742 468 EVDKAAE----HIQYLIKWIMDGYTDSCKLILCCEDDVDII---------ESVKTHC-KVIKVDPPVTHEIMEVLIQIAR 533 (629)
Q Consensus 468 EID~Ls~----~~q~aLlrilEe~~~~~~~ILitN~~~~I~---------~aLrSR~-~~I~F~ppt~eei~~iL~~i~~ 533 (629)
|++.+.. +....|..+.+.. ..+.+|+++.....+. .++..|. ..+.+.+++.++..+++...+.
T Consensus 145 e~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 145 EAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred CHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 9999853 4455666666543 3678888887542111 2244454 6899999999999999988776
Q ss_pred hcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 036742 534 KEDFDLSMTFAAKIATKAKQNLRKAIMALEAC 565 (629)
Q Consensus 534 kegl~is~e~L~~Ia~~s~GDiR~AInlLq~~ 565 (629)
..++..++. ..|+..++|+...+..++..+
T Consensus 224 ~~~~~~~~~--~~i~~~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 224 EADIDFKDY--EVVYEKIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHTCCCCCH--HHHHHHHCSCHHHHHHHHHHH
T ss_pred HcCCCCCcH--HHHHHHhCCCHHHHHHHHHHH
Confidence 666666543 889999999998766555543
No 88
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.11 E-value=3.1e-10 Score=116.32 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcC-C-CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742 366 EAQLLKELVVDG-N-CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM 443 (629)
Q Consensus 366 ~~~~Lk~~L~~g-~-~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~ 443 (629)
....|..|+... . ..+++|+||||||||++|.+||+.+... ..++.+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~---------------------G~vn~~~--------- 138 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY---------------------GCVNWTN--------- 138 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE---------------------EECCTTC---------
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc---------------------ceeeccc---------
Confidence 445677777754 2 3479999999999999999999974111 1111110
Q ss_pred HHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHh--------ccC-----CCcEEEEEecCC----------
Q 036742 444 GLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMD--------GYT-----DSCKLILCCEDD---------- 500 (629)
Q Consensus 444 ~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilE--------e~~-----~~~~~ILitN~~---------- 500 (629)
..|.........|++ +|-+.+..++++.++.+++ .+. ..+++|++||..
T Consensus 139 -------~~f~l~~~~~k~i~l-~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~ 210 (267)
T 1u0j_A 139 -------ENFPFNDCVDKMVIW-WEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST 210 (267)
T ss_dssp -------SSCTTGGGSSCSEEE-ECSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE
T ss_pred -------cccccccccccEEEE-eccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc
Confidence 011111111223555 5545555667778888887 333 567899999971
Q ss_pred -ccchHHHhhcceEeecc--------CCCHHHHHHHHHHHHHhcCCCCCH
Q 036742 501 -VDIIESVKTHCKVIKVD--------PPVTHEIMEVLIQIARKEDFDLSM 541 (629)
Q Consensus 501 -~~I~~aLrSR~~~I~F~--------ppt~eei~~iL~~i~~kegl~is~ 541 (629)
....++|++||.++.|. +++.++....+.-+ +.+.+++++
T Consensus 211 s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 211 TFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp ECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred chhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 24678999999999998 89999999999844 666666543
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.05 E-value=4e-10 Score=108.81 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=76.0
Q ss_pred hhhccCCCCCCcccccH----HHHHHHHHHHHcCC----CCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 036742 348 WADKHQPSSLNGFICHR----HEAQLLKELVVDGN----CPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLV 419 (629)
Q Consensus 348 W~eKyrP~tfddIiG~e----~~~~~Lk~~L~~g~----~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~ 419 (629)
+..+|++.+|+++++.. .+++.+..++.... ..+++|+||+|||||++|++++.++.....
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~----------- 83 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNV----------- 83 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTC-----------
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------
Confidence 34678889999999743 36677778887542 168999999999999999999998753321
Q ss_pred cccCCcceEEEecccchh-hHHHH-HHHHHHHHHHhccCcCCCCeEEEEEccchhhH--HHHH-HHHHHHhc-cCCCcEE
Q 036742 420 PVASSAHHVELNVNLQAN-AKYAL-MGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE--HIQY-LIKWIMDG-YTDSCKL 493 (629)
Q Consensus 420 ~i~sS~~vleInas~~~~-~k~~l-~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~--~~q~-aLlrilEe-~~~~~~~ 493 (629)
.++.+++..... ..... ...+......+. ...+|||||++.... ..+. .|..+++. +.....+
T Consensus 84 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~ 152 (202)
T 2w58_A 84 ------SSLIVYVPELFRELKHSLQDQTMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPT 152 (202)
T ss_dssp ------CEEEEEHHHHHHHHHHC---CCCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCE
T ss_pred ------eEEEEEhHHHHHHHHHHhccchHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 144555431100 00000 000011111111 124999999977532 2233 33334442 2356789
Q ss_pred EEEecCC
Q 036742 494 ILCCEDD 500 (629)
Q Consensus 494 ILitN~~ 500 (629)
|++||..
T Consensus 153 i~tsn~~ 159 (202)
T 2w58_A 153 FFTSNFD 159 (202)
T ss_dssp EEEESSC
T ss_pred EEEcCCC
Confidence 9999865
No 90
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.01 E-value=2.5e-09 Score=114.33 Aligned_cols=192 Identities=17% Similarity=0.214 Sum_probs=124.9
Q ss_pred CcccccHHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccc
Q 036742 358 NGFICHRHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQ 435 (629)
Q Consensus 358 ddIiG~e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~ 435 (629)
.+++|.......+...+. ......+||+|++||||+++|+++........ .++.+||...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~------------------~fv~vnc~~~ 190 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG------------------AFVDLNCASI 190 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS------------------CEEEEESSSS
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccC------------------CcEEEEcccC
Confidence 467887766655555543 12233699999999999999999987642211 1678888532
Q ss_pred hhhHHHHHHHHHHHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEEEE
Q 036742 436 ANAKYALMGLVKEIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLILC 496 (629)
Q Consensus 436 ~~~k~~l~~~lrei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~ILi 496 (629)
... ....+++......|.... ...+.+||||||+.|....|..|+++++... .++++|++
T Consensus 191 ~~~-~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 191 PQE-LAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp CTT-THHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred ChH-HHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 211 000111111001111110 0123489999999999999999999998532 35679999
Q ss_pred ecCCc-------cchHHHhhcceE--eeccCCCH--HHHHHHHH----HHHHhcC---CCCCHHHHHHHHHHc-cCCHHH
Q 036742 497 CEDDV-------DIIESVKTHCKV--IKVDPPVT--HEIMEVLI----QIARKED---FDLSMTFAAKIATKA-KQNLRK 557 (629)
Q Consensus 497 tN~~~-------~I~~aLrSR~~~--I~F~ppt~--eei~~iL~----~i~~keg---l~is~e~L~~Ia~~s-~GDiR~ 557 (629)
||..- .+.+.|..|+.+ |.++|+.. +++..++. +.+.+.+ ..++++++..|.... .||+|.
T Consensus 270 t~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvre 349 (368)
T 3dzd_A 270 TNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRE 349 (368)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHH
T ss_pred cCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHH
Confidence 98642 245678888754 56777765 45554443 3344434 358999999999886 899999
Q ss_pred HHHHHHHHHhc
Q 036742 558 AIMALEACKAL 568 (629)
Q Consensus 558 AInlLq~~~~~ 568 (629)
+.|.++.+...
T Consensus 350 L~n~i~~~~~~ 360 (368)
T 3dzd_A 350 LKNLIERAVIL 360 (368)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999987764
No 91
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.95 E-value=4.2e-09 Score=104.05 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCCC---eEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHH
Q 036742 364 RHEAQLLKELVVDGNCP---HILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKY 440 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p---~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~ 440 (629)
...+..|+.+++. .| ++||+||||||||++|.++|+.+.+.-. .. .|....
T Consensus 42 ~~f~~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~-----------~f--------ans~s~----- 95 (212)
T 1tue_A 42 ITFLGALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI-----------SF--------VNSTSH----- 95 (212)
T ss_dssp HHHHHHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC-----------CC--------CCSSSC-----
T ss_pred HHHHHHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee-----------eE--------Eeccch-----
Confidence 3446778888874 44 7999999999999999999999854311 00 011000
Q ss_pred HHHHHHHHHHHHhccCcCCCCeEEEEEccchhhH-HHHHHHHHHHhccC-------------CCcEEEEEecCC---ccc
Q 036742 441 ALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAE-HIQYLIKWIMDGYT-------------DSCKLILCCEDD---VDI 503 (629)
Q Consensus 441 ~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~-~~q~aLlrilEe~~-------------~~~~~ILitN~~---~~I 503 (629)
+........+||+|||+|.-.. .....++.+++... ...++|+|||.. ...
T Consensus 96 ------------f~l~~l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~ 163 (212)
T 1tue_A 96 ------------FWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNR 163 (212)
T ss_dssp ------------GGGGGGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSS
T ss_pred ------------hhhcccCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccc
Confidence 0001111245999999996532 23456777777542 235899999984 335
Q ss_pred hHHHhhcceEeeccCC
Q 036742 504 IESVKTHCKVIKVDPP 519 (629)
Q Consensus 504 ~~aLrSR~~~I~F~pp 519 (629)
...|.||+..+.|+.+
T Consensus 164 ~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 164 WPYLESRITVFEFPNA 179 (212)
T ss_dssp CHHHHTSCEEEECCSC
T ss_pred hhhhhhhEEEEEcCCC
Confidence 6889999999999743
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.93 E-value=1.1e-08 Score=109.88 Aligned_cols=194 Identities=13% Similarity=0.147 Sum_probs=124.6
Q ss_pred CCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742 357 LNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNL 434 (629)
Q Consensus 357 fddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~ 434 (629)
+..++|.....+.+.+.+.. ...-.++|+|++||||+++|+++....... ...++.+||..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-----------------~~~fv~v~~~~ 198 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS-----------------KEPFVALNVAS 198 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT-----------------TSCEEEEETTT
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC-----------------CCCeEEEecCC
Confidence 46788877666666555542 222368999999999999999998763211 12367888853
Q ss_pred chhhHHHHH-HHHHHHHHHhccCc--------CCCCeEEEEEccchhhHHHHHHHHHHHhccC-----------CCcEEE
Q 036742 435 QANAKYALM-GLVKEIRDNLAITP--------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-----------DSCKLI 494 (629)
Q Consensus 435 ~~~~k~~l~-~~lrei~~~~~~~~--------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-----------~~~~~I 494 (629)
.... .+. +++......|.... ...+.+||||||+.|....|..|+++++... .++++|
T Consensus 199 ~~~~--~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 276 (387)
T 1ny5_A 199 IPRD--IFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRIL 276 (387)
T ss_dssp SCHH--HHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEE
T ss_pred CCHH--HHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 2211 111 11111111111110 0124599999999999999999999998521 467899
Q ss_pred EEecCCc-------cchHHHhhcce--EeeccCCCH--HHHHHHH----HHHHHhcCC---CCCHHHHHHHHHHc-cCCH
Q 036742 495 LCCEDDV-------DIIESVKTHCK--VIKVDPPVT--HEIMEVL----IQIARKEDF---DLSMTFAAKIATKA-KQNL 555 (629)
Q Consensus 495 LitN~~~-------~I~~aLrSR~~--~I~F~ppt~--eei~~iL----~~i~~kegl---~is~e~L~~Ia~~s-~GDi 555 (629)
++||..- .+.+.|..|+. .+.++|+-. +++..++ .+.+.+.+. .++++++..|.... .||+
T Consensus 277 ~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNv 356 (387)
T 1ny5_A 277 AATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNV 356 (387)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHH
T ss_pred EeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHH
Confidence 9998742 24566777764 456666643 4544433 334444443 37899999988775 7999
Q ss_pred HHHHHHHHHHHhcC
Q 036742 556 RKAIMALEACKALN 569 (629)
Q Consensus 556 R~AInlLq~~~~~~ 569 (629)
|..-|.++.+....
T Consensus 357 reL~~~i~~~~~~~ 370 (387)
T 1ny5_A 357 RELKNVIERAVLFS 370 (387)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999877643
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.89 E-value=3.6e-09 Score=110.37 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=44.0
Q ss_pred hccCCCCCCccccc----HHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 350 DKHQPSSLNGFICH----RHEAQLLKELVVDG---NCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 350 eKyrP~tfddIiG~----e~~~~~Lk~~L~~g---~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
..+++.+|+++++. ..++..+..|+... ...+++|+||||||||+||.++|.++.
T Consensus 116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56677899999863 34666777888753 245899999999999999999999875
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.87 E-value=2.9e-09 Score=99.51 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=76.1
Q ss_pred CCCccc--ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 356 SLNGFI--CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 356 tfddIi--G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
+|++++ ++..++..|..+ ....++|+||+|+|||+|+++++..+..... .+++++..
T Consensus 15 ~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~-----------------~~~~~~~~ 73 (149)
T 2kjq_A 15 SFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGK-----------------NAAYIDAA 73 (149)
T ss_dssp CCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTC-----------------CEEEEETT
T ss_pred chhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCC-----------------cEEEEcHH
Confidence 455543 355556656555 3347999999999999999999998743211 14555553
Q ss_pred cchhhHHHHHHHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccC-CCcE-EEEEecCCcc---chHHHh
Q 036742 434 LQANAKYALMGLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYT-DSCK-LILCCEDDVD---IIESVK 508 (629)
Q Consensus 434 ~~~~~k~~l~~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~-~~~~-~ILitN~~~~---I~~aLr 508 (629)
..... .+ .....||||||++.+....+..|..+++... .... +|++++.... ..+.|+
T Consensus 74 ~~~~~-------------~~----~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~ 136 (149)
T 2kjq_A 74 SMPLT-------------DA----AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLR 136 (149)
T ss_dssp TSCCC-------------GG----GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHH
T ss_pred HhhHH-------------HH----HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHH
Confidence 22211 01 1124599999999987655777777766432 2344 8888885432 228999
Q ss_pred hcce
Q 036742 509 THCK 512 (629)
Q Consensus 509 SR~~ 512 (629)
+|+.
T Consensus 137 SRl~ 140 (149)
T 2kjq_A 137 TRMA 140 (149)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 9984
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.82 E-value=3e-08 Score=127.80 Aligned_cols=144 Identities=13% Similarity=0.253 Sum_probs=96.2
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742 369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448 (629)
Q Consensus 369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre 448 (629)
.+..++..+ .++||+||||||||++|+.++..+.+. .++.++.+...... .+...+..
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~~~-------------------~~~~infsa~ts~~-~~~~~i~~ 1316 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSSLY-------------------DVVGINFSKDTTTE-HILSALHR 1316 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCSSC-------------------EEEEEECCTTCCHH-HHHHHHHH
T ss_pred HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCCCC-------------------ceEEEEeecCCCHH-HHHHHHHH
Confidence 455666665 389999999999999996666543221 14566665433321 22233322
Q ss_pred HHHH--------hccCcCCCCeEEEEEccchhhH------HHHHHHHHHHhcc---C---------CCcEEEEEecCCc-
Q 036742 449 IRDN--------LAITPEVSNAMIVIYEVDKAAE------HIQYLIKWIMDGY---T---------DSCKLILCCEDDV- 501 (629)
Q Consensus 449 i~~~--------~~~~~~~~~kVIIIDEID~Ls~------~~q~aLlrilEe~---~---------~~~~~ILitN~~~- 501 (629)
.... +.....+...||||||++.... ...+.|+.++|.. . .++.+|.+||.+.
T Consensus 1317 ~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~ 1396 (2695)
T 4akg_A 1317 HTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTD 1396 (2695)
T ss_dssp HBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTS
T ss_pred HhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCcc
Confidence 2110 0111123445999999887632 4778888888731 1 2356888999884
Q ss_pred ----cchHHHhhcceEeeccCCCHHHHHHHHHHHHHh
Q 036742 502 ----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIARK 534 (629)
Q Consensus 502 ----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~k 534 (629)
.|++++.+||.++.++.|+.+++..|+..++..
T Consensus 1397 gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1397 PGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred CCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 699999999999999999999999999888753
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.72 E-value=7.7e-08 Score=105.37 Aligned_cols=136 Identities=11% Similarity=0.171 Sum_probs=79.9
Q ss_pred cCchhhhccCCCCCCccc-ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCcccccccc
Q 036742 344 LRPFWADKHQPSSLNGFI-CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVA 422 (629)
Q Consensus 344 ~~~lW~eKyrP~tfddIi-G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~ 422 (629)
...+|..||+|.+|+++- +|..++..+..++..+.. +++|.|+||||||+++.+++..+.....
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~-------------- 74 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE-------------- 74 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC--------------
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC--------------
Confidence 346799999999999997 788888888888887653 8999999999999999999998854321
Q ss_pred CCcceEEEecccchhhHHHHHHH-------HHHHHHHhc-------------cCcCCCCeEEEEEccchhhHHHHHHHHH
Q 036742 423 SSAHHVELNVNLQANAKYALMGL-------VKEIRDNLA-------------ITPEVSNAMIVIYEVDKAAEHIQYLIKW 482 (629)
Q Consensus 423 sS~~vleInas~~~~~k~~l~~~-------lrei~~~~~-------------~~~~~~~kVIIIDEID~Ls~~~q~aLlr 482 (629)
..++-+... ..... .+.+. +..+..... ........+|||||+..+....+..|.+
T Consensus 75 --~~il~~a~T-~~Aa~-~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~ 150 (459)
T 3upu_A 75 --TGIILAAPT-HAAKK-ILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLS 150 (459)
T ss_dssp --CCEEEEESS-HHHHH-HHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHH
T ss_pred --ceEEEecCc-HHHHH-HHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHH
Confidence 012333222 11110 01110 011111000 0011134599999999999888888887
Q ss_pred HHhccCCCcEEEEEecCCc
Q 036742 483 IMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 483 ilEe~~~~~~~ILitN~~~ 501 (629)
.+. ..+.+|++.....
T Consensus 151 ~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 151 TIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HSC---TTCEEEEEECTTS
T ss_pred hcc---CCCEEEEECCHHH
Confidence 764 5677888876543
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.68 E-value=4.1e-07 Score=99.93 Aligned_cols=204 Identities=12% Similarity=0.065 Sum_probs=121.2
Q ss_pred ccccHHHHHHHHHHHHcCC-----CCeEEEEcCCCCcHHHHHHHH-HHHHhCCCCCCCCCCccccccccCCcceEEEecc
Q 036742 360 FICHRHEAQLLKELVVDGN-----CPHILIKGQSGSGKRALAMAL-LHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN 433 (629)
Q Consensus 360 IiG~e~~~~~Lk~~L~~g~-----~p~ILL~GPPGtGKTtLAraL-AkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas 433 (629)
|+|++.++..|.-.+..|. .-|+||.|+||| ||.+|+++ ++.+ ... .+...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-pR~--------------------~ft~g- 271 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-PRG--------------------VYVDL- 271 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-SSE--------------------EEEEG-
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-CCe--------------------EEecC-
Confidence 8999999888887777663 128999999999 99999999 6542 111 11100
Q ss_pred cchhhHHHHHHHHHHHHHHhccC-c---CCCCeEEEEEccchhhHHHHHHHHHHHhcc---------CCCcEEEEEecCC
Q 036742 434 LQANAKYALMGLVKEIRDNLAIT-P---EVSNAMIVIYEVDKAAEHIQYLIKWIMDGY---------TDSCKLILCCEDD 500 (629)
Q Consensus 434 ~~~~~k~~l~~~lrei~~~~~~~-~---~~~~kVIIIDEID~Ls~~~q~aLlrilEe~---------~~~~~~ILitN~~ 500 (629)
.......+... +++... +... + ...+.|+||||++.+....+.+|+..||+. +..+.||.++|..
T Consensus 272 ~~ss~~gLt~s-~r~~tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 272 RRTELTDLTAV-LKEDRG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp GGCCHHHHSEE-EEESSS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred CCCCccCceEE-EEcCCC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 00000000000 000000 0000 0 012359999999999999999999999953 4667789999975
Q ss_pred c-----------cchHHHhhcc-eEeec-cC-------------CCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHc--
Q 036742 501 V-----------DIIESVKTHC-KVIKV-DP-------------PVTHEIMEVLIQIA-RKEDFDLSMTFAAKIATKA-- 551 (629)
Q Consensus 501 ~-----------~I~~aLrSR~-~~I~F-~p-------------pt~eei~~iL~~i~-~kegl~is~e~L~~Ia~~s-- 551 (629)
. .|.+++.+|| ..+.. .. ++.+++++++...- ..-...+++++.++|++..
T Consensus 350 ~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 4 6889999999 43332 22 23444555554332 1235678888888776542
Q ss_pred ----------------cCCHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHH
Q 036742 552 ----------------KQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIE 588 (629)
Q Consensus 552 ----------------~GDiR~AInlLq~~~~~~~~~~~~~~~~~~~ek~l~e 588 (629)
.-.+|..+.++..+.+.+.....+..++.|++.++.-
T Consensus 430 tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 430 RREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 1244666666665554444333445556666555543
No 98
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.48 E-value=8.7e-06 Score=91.02 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=102.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHh--CCCCCCCCCCccccccccCCcceE
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIY--GDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~--g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
-|.....++|.+..++.|..++.. +..+.++|+||+|+|||+||..++.... ...+ . ..++
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~--------------~~v~ 183 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-P--------------GGVH 183 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-T--------------TCEE
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-C--------------CceE
Confidence 456668899999999999999973 3455788999999999999999875320 0000 0 0023
Q ss_pred EEecccchhhHHHHHHHHHHHHHHhcc-----------------------CcCCCCeEEEEEccchhhHHHHHHHHHHHh
Q 036742 429 ELNVNLQANAKYALMGLVKEIRDNLAI-----------------------TPEVSNAMIVIYEVDKAAEHIQYLIKWIMD 485 (629)
Q Consensus 429 eInas~~~~~k~~l~~~lrei~~~~~~-----------------------~~~~~~kVIIIDEID~Ls~~~q~aLlrilE 485 (629)
.++...... ..++.. +..+...... .....+.+||||+++... .++
T Consensus 184 wv~~~~~~~-~~~~~~-l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~---------~l~ 252 (591)
T 1z6t_A 184 WVSVGKQDK-SGLLMK-LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW---------VLK 252 (591)
T ss_dssp EEEEESCCH-HHHHHH-HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------HHH
T ss_pred EEECCCCch-HHHHHH-HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------HHH
Confidence 333221100 001111 1111111000 001123599999998632 123
Q ss_pred ccCCCcEEEEEecCCccchHHHhhcceEee-ccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 036742 486 GYTDSCKLILCCEDDVDIIESVKTHCKVIK-VDPPVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMA 561 (629)
Q Consensus 486 e~~~~~~~ILitN~~~~I~~aLrSR~~~I~-F~ppt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInl 561 (629)
.+...+.||+||....... .+......+. ..+++.++..+.+...+... ..-.++.+..|++.|+|.+--+-.+
T Consensus 253 ~l~~~~~ilvTsR~~~~~~-~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~ 327 (591)
T 1z6t_A 253 AFDSQCQILLTTRDKSVTD-SVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLI 327 (591)
T ss_dssp TTCSSCEEEEEESCGGGGT-TCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCCCeEEEECCCcHHHH-hcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHH
Confidence 3456788888887643221 1111112222 25899999999998776431 1112457888999999976544333
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.35 E-value=1.9e-05 Score=102.13 Aligned_cols=147 Identities=17% Similarity=0.197 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHH
Q 036742 365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMG 444 (629)
Q Consensus 365 ~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~ 444 (629)
.....|..++..+. ++++.||+|||||++++++|+.+ |.. ++.+||++..... .+..
T Consensus 633 r~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l-g~~-------------------~v~~nc~e~ld~~-~lg~ 689 (2695)
T 4akg_A 633 IGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL-GRV-------------------VVVFNCDDSFDYQ-VLSR 689 (2695)
T ss_dssp HHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT-TCC-------------------CEEEETTSSCCHH-HHHH
T ss_pred HHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh-CCc-------------------EEEEECCCCCChh-HhhH
Confidence 34455556666543 68899999999999999999986 554 4778887554432 2233
Q ss_pred HHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHH-------Hhcc-------------CCCcEEEEEec----CC
Q 036742 445 LVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWI-------MDGY-------------TDSCKLILCCE----DD 500 (629)
Q Consensus 445 ~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlri-------lEe~-------------~~~~~~ILitN----~~ 500 (629)
.+...... +..+++||++++..+++.++... +... ...+.+++|.| ..
T Consensus 690 ~~~g~~~~--------Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~ 761 (2695)
T 4akg_A 690 LLVGITQI--------GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGR 761 (2695)
T ss_dssp HHHHHHHH--------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSS
T ss_pred HHHHHHhc--------CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCc
Confidence 44443322 35899999999988877776322 2111 13455777777 34
Q ss_pred ccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 036742 501 VDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDFDLSMTFAA 545 (629)
Q Consensus 501 ~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl~is~e~L~ 545 (629)
..+.++|++||..+.+..|+.+.+.+++... .|+........
T Consensus 762 ~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s---~Gf~~a~~la~ 803 (2695)
T 4akg_A 762 SELPENLKKSFREFSMKSPQSGTIAEMILQI---MGFEDSKSLAS 803 (2695)
T ss_dssp CCCCHHHHTTEEEEECCCCCHHHHHHHHHHH---HHCSSHHHHHH
T ss_pred ccccHHHHhheEEEEeeCCCHHHHHHHHHHh---cCCCchHHHHH
Confidence 5689999999999999999999888886533 34543343333
No 100
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.32 E-value=2.3e-05 Score=94.04 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=106.6
Q ss_pred CCCCCCcccccHHHHHHHHHHHHc--CCCCeEEEEcCCCCcHHHHHHHHHHHHh--CCCCCCCCCCccccccccCCcceE
Q 036742 353 QPSSLNGFICHRHEAQLLKELVVD--GNCPHILIKGQSGSGKRALAMALLHEIY--GDACWNEKWPTQVLVPVASSAHHV 428 (629)
Q Consensus 353 rP~tfddIiG~e~~~~~Lk~~L~~--g~~p~ILL~GPPGtGKTtLAraLAkeL~--g~~~~~~~~~~~v~~~i~sS~~vl 428 (629)
-|.....++|.++.++.|.++|.. +..+.+.|+|+.|+|||+||..++.... ...++ ..++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~---------------~~~~ 183 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFS---------------GGVH 183 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTST---------------TCEE
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCC---------------CeEE
Confidence 455668899999999999999963 3445678999999999999998886521 11110 0133
Q ss_pred EEecccc--hhhHHHHHHHHHHHHH-----------------Hhc--cCcCCCCeEEEEEccchhhHHHHHHHHHHHhcc
Q 036742 429 ELNVNLQ--ANAKYALMGLVKEIRD-----------------NLA--ITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGY 487 (629)
Q Consensus 429 eInas~~--~~~k~~l~~~lrei~~-----------------~~~--~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~ 487 (629)
.++.+.. ......+..+...+.. .+. .....++.+||||+++... .++.+
T Consensus 184 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------~~~~~ 254 (1249)
T 3sfz_A 184 WVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------VLKAF 254 (1249)
T ss_dssp EEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------HHTTT
T ss_pred EEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------HHHhh
Confidence 4443221 1111111111111110 000 0001224599999999652 23344
Q ss_pred CCCcEEEEEecCCccchHHHhhcceEeeccC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 036742 488 TDSCKLILCCEDDVDIIESVKTHCKVIKVDP-PVTHEIMEVLIQIARKEDFDLSMTFAAKIATKAKQNLRKAIMAL 562 (629)
Q Consensus 488 ~~~~~~ILitN~~~~I~~aLrSR~~~I~F~p-pt~eei~~iL~~i~~kegl~is~e~L~~Ia~~s~GDiR~AInlL 562 (629)
...++||+||....... .+......+.+.+ ++.++..+.+...+....-. .++....|++.|+|-. -||.++
T Consensus 255 ~~~~~ilvTtR~~~~~~-~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glP-Lal~~~ 327 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTD-SVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSP-LVVSLI 327 (1249)
T ss_dssp CSSCEEEEEESSTTTTT-TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCH-HHHHHH
T ss_pred cCCCEEEEEcCCHHHHH-hhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCH-HHHHHH
Confidence 67788999887653321 1112224567775 89999999888776432222 2356788999998854 344444
No 101
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.25 E-value=7.5e-06 Score=91.51 Aligned_cols=170 Identities=13% Similarity=0.080 Sum_probs=99.7
Q ss_pred cccHHHHHHHHHHHHcC---CCCeEEEEcCCCCcHHHHHHHHHHH---HhCCCCCCCCCCccccccccCCcceEEEeccc
Q 036742 361 ICHRHEAQLLKELVVDG---NCPHILIKGQSGSGKRALAMALLHE---IYGDACWNEKWPTQVLVPVASSAHHVELNVNL 434 (629)
Q Consensus 361 iG~e~~~~~Lk~~L~~g---~~p~ILL~GPPGtGKTtLAraLAke---L~g~~~~~~~~~~~v~~~i~sS~~vleInas~ 434 (629)
+|.+..++.|.++|..+ ....+.|+|+.|+||||||+.+++. -....+ . .++.++.+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~---------------~~~wv~vs~ 194 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-D---------------SIVWLKDSG 194 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-S---------------EEEEEECCC
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-C---------------cEEEEEECC
Confidence 49999999999999654 3456789999999999999999972 111111 0 134444433
Q ss_pred ch--hhHHHHHHHHHHHHHHh--------------------ccCcCCC-CeEEEEEccchhhHHHHHHHHHHHhccCCCc
Q 036742 435 QA--NAKYALMGLVKEIRDNL--------------------AITPEVS-NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSC 491 (629)
Q Consensus 435 ~~--~~k~~l~~~lrei~~~~--------------------~~~~~~~-~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~ 491 (629)
.. ....++..++..+.... ...-... ..+||||+++....- .+... .++
T Consensus 195 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~---~~~~~-----~gs 266 (549)
T 2a5y_B 195 TAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI---RWAQE-----LRL 266 (549)
T ss_dssp CSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH---HHHHH-----TTC
T ss_pred CCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh---ccccc-----CCC
Confidence 21 22223333333322110 0000122 459999999985422 22211 578
Q ss_pred EEEEEecCCccchHHHhhcceEeeccCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCH
Q 036742 492 KLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVLIQIARKEDF-DLSMTFAAKIATKAKQNL 555 (629)
Q Consensus 492 ~~ILitN~~~~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~kegl-~is~e~L~~Ia~~s~GDi 555 (629)
.||+||....... ....-...+.+.+++.++..+.+...+..... .-..+....|++.|+|..
T Consensus 267 ~ilvTTR~~~v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 267 RCLVTTRDVEISN-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp EEEEEESBGGGGG-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred EEEEEcCCHHHHH-HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 8888887533211 11111246899999999999988876432211 111346778999998865
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.24 E-value=1.9e-06 Score=112.10 Aligned_cols=143 Identities=15% Similarity=0.252 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHHHHHHH
Q 036742 369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALMGLVKE 448 (629)
Q Consensus 369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~~~lre 448 (629)
.+..++..+. ++||+||+|||||.++..++..+.+. .++.+|.+...... .+...+..
T Consensus 1296 ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l~~~-------------------~~~~infS~~Tta~-~l~~~~e~ 1353 (3245)
T 3vkg_A 1296 VLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAFPDF-------------------EVVSLNFSSATTPE-LLLKTFDH 1353 (3245)
T ss_dssp HHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGCTTE-------------------EEEEECCCTTCCHH-HHHHHHHH
T ss_pred HHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhCCCC-------------------ceEEEEeeCCCCHH-HHHHHHhh
Confidence 4556666554 69999999999998876655443221 14667775443322 22233322
Q ss_pred HHHHh-----c--cCc--CCCCeEEEEEccchhhH------HHHHHHHHHHhcc---C---------CCcEEEEEecCCc
Q 036742 449 IRDNL-----A--ITP--EVSNAMIVIYEVDKAAE------HIQYLIKWIMDGY---T---------DSCKLILCCEDDV 501 (629)
Q Consensus 449 i~~~~-----~--~~~--~~~~kVIIIDEID~Ls~------~~q~aLlrilEe~---~---------~~~~~ILitN~~~ 501 (629)
..... . ..+ .++..||||||++.-.. ...+.|+.++|.. . .++.||.++|.+.
T Consensus 1354 ~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~ 1433 (3245)
T 3vkg_A 1354 HCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPT 1433 (3245)
T ss_dssp HEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTT
T ss_pred cceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCC
Confidence 11100 0 011 13334999999987643 4778888888731 1 3456888888763
Q ss_pred -----cchHHHhhcceEeeccCCCHHHHHHHHHHHHH
Q 036742 502 -----DIIESVKTHCKVIKVDPPVTHEIMEVLIQIAR 533 (629)
Q Consensus 502 -----~I~~aLrSR~~~I~F~ppt~eei~~iL~~i~~ 533 (629)
.|.+++.+||.++.++.|+.+.+..|...+..
T Consensus 1434 ~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1434 DAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp STTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999877654
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.08 E-value=1.2e-05 Score=77.12 Aligned_cols=67 Identities=16% Similarity=0.336 Sum_probs=48.2
Q ss_pred CeEEEEEccc---hhhHHHHHHHHHHHhccCCCcEEEEEec--CCccchHHHhhc--ceEeeccCCCHHHHHHHHH
Q 036742 461 NAMIVIYEVD---KAAEHIQYLIKWIMDGYTDSCKLILCCE--DDVDIIESVKTH--CKVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 461 ~kVIIIDEID---~Ls~~~q~aLlrilEe~~~~~~~ILitN--~~~~I~~aLrSR--~~~I~F~ppt~eei~~iL~ 529 (629)
..||||||++ .+.......+..+++. ....+|++++ ....+...+.+| +.++.|...+.+++...|.
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 4699999964 4456778888888876 3444777774 344567888888 7889988887766655543
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.89 E-value=5.3e-06 Score=81.28 Aligned_cols=60 Identities=3% Similarity=0.011 Sum_probs=40.1
Q ss_pred CCCeEEEEEccchhh--H-HHHH--HHHHHHhc-cCCCcEEEEEecCCccchHHHhhcce-EeeccC
Q 036742 459 VSNAMIVIYEVDKAA--E-HIQY--LIKWIMDG-YTDSCKLILCCEDDVDIIESVKTHCK-VIKVDP 518 (629)
Q Consensus 459 ~~~kVIIIDEID~Ls--~-~~q~--aLlrilEe-~~~~~~~ILitN~~~~I~~aLrSR~~-~I~F~p 518 (629)
+.+.||||||++.+. . ...+ .++..++. -.....+||+++.+..|+.+|+.|+. .++|.+
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEE
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcC
Confidence 446799999999982 2 1111 12233332 23455799999998889999999985 455554
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.82 E-value=0.00036 Score=91.28 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHHH
Q 036742 364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYALM 443 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l~ 443 (629)
+...-.|-.++..+. +..+.||+|||||.+++.+|+.+ |.. ++-+||++..... .+.
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l-gr~-------------------~~vfnC~~~~d~~-~~g 647 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL-GRF-------------------VLVFCCDEGFDLQ-AMS 647 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT-TCC-------------------EEEEECSSCCCHH-HHH
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh-CCe-------------------EEEEeCCCCCCHH-HHH
Confidence 334455666666543 45789999999999999999996 554 5677887554432 334
Q ss_pred HHHHHHHHHhccCcCCCCeEEEEEccchhhHHHHHHHHHHHh-----------------c----cCCCcEEEEEecC---
Q 036742 444 GLVKEIRDNLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMD-----------------G----YTDSCKLILCCED--- 499 (629)
Q Consensus 444 ~~lrei~~~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilE-----------------e----~~~~~~~ILitN~--- 499 (629)
.++..+.+. +...++||++++..++..++...+. . ....+.|++|.|.
T Consensus 648 ~i~~G~~~~--------GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~ 719 (3245)
T 3vkg_A 648 RIFVGLCQC--------GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA 719 (3245)
T ss_dssp HHHHHHHHH--------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred HHHhhHhhc--------CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence 444443321 3478999999998776665444322 0 1134567777774
Q ss_pred -CccchHHHhhcceEeeccCCCHHHHHHHHH
Q 036742 500 -DVDIIESVKTHCKVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 500 -~~~I~~aLrSR~~~I~F~ppt~eei~~iL~ 529 (629)
...+.+.|+.||..+.+..|+.+.+.+++.
T Consensus 720 gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 720 GRSNLPDNLKKLFRSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp GCCCSCHHHHTTEEEEECCSCCHHHHHHHHH
T ss_pred CcccChHHHHhhcEEEEEeCCCHHHHHHHHH
Confidence 456899999999999999999998888864
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.76 E-value=1.1e-05 Score=77.80 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=35.6
Q ss_pred CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc------cchHHHhhcce
Q 036742 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV------DIIESVKTHCK 512 (629)
Q Consensus 461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~------~I~~aLrSR~~ 512 (629)
..+|||||++.+.++....|..+.+. +..+|++....+ ...+.|.+++.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad 131 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD 131 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence 45999999999977788888878774 677887765332 34566777763
No 107
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.73 E-value=0.00034 Score=83.54 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHHc-CCCCeEEEEcCCCCcHHHHHHHHHH
Q 036742 361 ICHRHEAQLLKELVVD-GNCPHILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 361 iG~e~~~~~Lk~~L~~-g~~p~ILL~GPPGtGKTtLAraLAk 401 (629)
+|.+..++.|.++|.. ...+.+.|+||.|+||||||+.++.
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 8999999999999975 4456788999999999999999985
No 108
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.59 E-value=0.00012 Score=77.05 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|+||||||||++|..+|..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4789999999999999999987
No 109
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.41 E-value=0.00063 Score=76.71 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecccchhhHHHH
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVNLQANAKYAL 442 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas~~~~~k~~l 442 (629)
.+...+.+..++. .+.++|.||||||||+++.+++..+..... .++.. +....... .+
T Consensus 191 ~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~-----------------~Vl~~-ApT~~Aa~-~L 248 (574)
T 3e1s_A 191 SEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESLGL-----------------EVGLC-APTGKAAR-RL 248 (574)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHTTC-----------------CEEEE-ESSHHHHH-HH
T ss_pred CHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-----------------eEEEe-cCcHHHHH-Hh
Confidence 4555555555553 357899999999999999999987743321 13322 22222111 11
Q ss_pred HHHHH----HHHHHhccC---------cCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 443 MGLVK----EIRDNLAIT---------PEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 443 ~~~lr----ei~~~~~~~---------~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+.+. .+...+... ......+|||||+..+.......|.+.+ .....+|++.....
T Consensus 249 ~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 249 GEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp HHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred HhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 11000 001111100 1112349999999999877666655443 36778888876543
No 110
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.26 E-value=0.0018 Score=64.43 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+...+.+..++..+ .+|++||+|+|||.+|.+++..+
T Consensus 95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 445555566665542 59999999999999999988775
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.19 E-value=0.0014 Score=65.20 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=27.4
Q ss_pred CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEec
Q 036742 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCE 498 (629)
Q Consensus 461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN 498 (629)
..+|+|||+..+..+....+..+.+. +..+|++..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGL 124 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECC
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEec
Confidence 45999999999987777777665552 688888876
No 112
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.15 E-value=0.0019 Score=73.29 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+.++++||||||||+++..++..+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999998887764
No 113
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.11 E-value=0.00058 Score=86.25 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+||||||||+||.+++.+..
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998864
No 114
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.11 E-value=0.00027 Score=88.13 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
+|||||||||||++|++++.+.
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 8999999999999999999875
No 115
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.99 E-value=0.0034 Score=61.34 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.+.|.||+|+|||||+++++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999999994
No 116
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.98 E-value=0.032 Score=53.66 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=27.6
Q ss_pred eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742 462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDVD 502 (629)
Q Consensus 462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~~ 502 (629)
.+|||||+|.+.. +....+..++.......++|+.+..+..
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCH
Confidence 4999999999853 4455566666655566777666554443
No 117
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.97 E-value=0.0018 Score=64.64 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=41.6
Q ss_pred CeEEEEEccchhh-HHH--HHHHHHHHhccCCCcEEEEEecCC------------------ccchHHHhhcceEeeccCC
Q 036742 461 NAMIVIYEVDKAA-EHI--QYLIKWIMDGYTDSCKLILCCEDD------------------VDIIESVKTHCKVIKVDPP 519 (629)
Q Consensus 461 ~kVIIIDEID~Ls-~~~--q~aLlrilEe~~~~~~~ILitN~~------------------~~I~~aLrSR~~~I~F~pp 519 (629)
+.+|||||+-... .+. ...+..+.+.+...+.++.++|-. +.+.+.+..++..|.+-.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~ 164 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDL 164 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCC
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecC
Confidence 3599999987641 110 001111122334667888888732 2245666677777888888
Q ss_pred CHHHHHHHHH
Q 036742 520 VTHEIMEVLI 529 (629)
Q Consensus 520 t~eei~~iL~ 529 (629)
+++++.++|.
T Consensus 165 ~p~~l~~rl~ 174 (228)
T 2r8r_A 165 PPRELLERLR 174 (228)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8888877754
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.85 E-value=0.0019 Score=63.12 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=50.9
Q ss_pred eEEEEcCCCCcHH-HHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-cchhhHHHHHHHHHHHHHHhccCc-
Q 036742 381 HILIKGQSGSGKR-ALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRDNLAITP- 457 (629)
Q Consensus 381 ~ILL~GPPGtGKT-tLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas-~~~~~k~~l~~~lrei~~~~~~~~- 457 (629)
-.++|||.|+||| +|.+++.+...... .++.+.+. +.+.... +..-++..........
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~------------------kvl~~kp~~D~R~~~~-i~S~~g~~~~A~~~~~~ 82 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQY------------------KCLVIKYAKDTRYSSS-FCTHDRNTMEALPACLL 82 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CEEEEEETTCCCGGGS-CCHHHHHHSEEEEESSG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCC------------------eEEEEccccCccchhh-hhhccCCcccceecCCH
Confidence 4679999999999 78888887754321 14555442 2221111 1111110000000000
Q ss_pred ------CCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742 458 ------EVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC 497 (629)
Q Consensus 458 ------~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit 497 (629)
.....||+|||++-+ ++..+.+..+.+ .+.+||++.
T Consensus 83 ~d~~~~~~~~DvIlIDEaQFf-k~~ve~~~~L~~---~gk~VI~~G 124 (195)
T 1w4r_A 83 RDVAQEALGVAVIGIDEGQFF-PDIVEFCEAMAN---AGKTVIVAA 124 (195)
T ss_dssp GGGHHHHHTCSEEEESSGGGC-TTHHHHHHHHHH---TTCEEEEEE
T ss_pred HHHHHhccCCCEEEEEchhhh-HHHHHHHHHHHH---CCCeEEEEe
Confidence 001239999999999 666666655554 466788775
No 119
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.85 E-value=0.0051 Score=60.06 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGDA 407 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~~ 407 (629)
..|++|+++|.||||+|-.+|-...+.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G 56 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG 56 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 4689999999999999999998876554
No 120
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.85 E-value=0.0056 Score=55.83 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.||||+||||+|+.| ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999999 553
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.83 E-value=0.005 Score=59.32 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+||||++++++..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999864
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.82 E-value=0.0062 Score=58.32 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.++|+||+|+|||+++..+|.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998
No 123
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.81 E-value=0.0086 Score=60.07 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||+|+.||+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999987
No 124
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.80 E-value=0.03 Score=57.85 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=26.8
Q ss_pred eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+|||||+|.+.. .....+..++........+|+.+..+.
T Consensus 147 ~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 147 KIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp CEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred CEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 4999999999865 344455556665566677777665543
No 125
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.79 E-value=0.025 Score=53.57 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=25.9
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+|||||+|.+... ....+..++........+|+.+....
T Consensus 146 ~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 146 EVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP 186 (207)
T ss_dssp SEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC
T ss_pred eEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC
Confidence 49999999988542 33445556665555666666655443
No 126
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.75 E-value=0.028 Score=53.29 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=25.0
Q ss_pred eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+.. +....+..++........+|+.+...
T Consensus 148 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 148 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred CEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 4999999998743 33445555665555566666655443
No 127
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.75 E-value=0.015 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.||||+||||+|+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 128
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.74 E-value=0.0011 Score=71.03 Aligned_cols=25 Identities=48% Similarity=0.488 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
.++|+||+|+||||++++++..+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 6889999999999999999998633
No 129
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.72 E-value=0.048 Score=55.93 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=27.9
Q ss_pred eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
++|||||+|.|.. +....+..++......+.+|+.+-...
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 4999999999864 455566666666666777776654443
No 130
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.72 E-value=0.0098 Score=63.08 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 354 PSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 354 P~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+.+++++...+ .|+.++... ...++|.||+|+||||++++++..+.
T Consensus 103 ~~~l~~lg~~~----~l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 103 VLTMEELGMGE----VFKRVSDVP-RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CCCTTTTTCCH----HHHHHHHCS-SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHcCChH----HHHHHHhCC-CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45677776544 344444322 22689999999999999999999874
No 131
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.022 Score=55.94 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.+++.||+|||||+++..++-
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHHh
Confidence 699999999999987766553
No 132
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.70 E-value=0.022 Score=54.78 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999885
No 133
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.68 E-value=0.015 Score=58.30 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
...|+|.|+||+||||+|+.|+..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999863
No 134
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.64 E-value=0.013 Score=57.18 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|+|.||||+||+|.|+.||+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 135
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.62 E-value=0.02 Score=64.39 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=50.4
Q ss_pred eEEEEEccchhh----HHHHHHHHHHHhcc-CCCcEEEEEecCCc--cchHHHhhcc-eEeeccCCCHHHHHHHHH
Q 036742 462 AMIVIYEVDKAA----EHIQYLIKWIMDGY-TDSCKLILCCEDDV--DIIESVKTHC-KVIKVDPPVTHEIMEVLI 529 (629)
Q Consensus 462 kVIIIDEID~Ls----~~~q~aLlrilEe~-~~~~~~ILitN~~~--~I~~aLrSR~-~~I~F~ppt~eei~~iL~ 529 (629)
-||||||++.+. ......|.++.... ..++.+|++|..+. .|...|++-| ..|-|.-.+..+...+|-
T Consensus 345 ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 345 IVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred EEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 399999999874 34556677776654 35667888998887 5788888887 457787778888777763
No 136
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.61 E-value=0.00059 Score=71.68 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+|||++|+.||+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999999986
No 137
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.59 E-value=0.0056 Score=59.58 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+||+|+|||++++.++..+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999863
No 138
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.59 E-value=0.0013 Score=61.79 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|+|.||+||||||+|+.||+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999987
No 139
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.56 E-value=0.0015 Score=69.51 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++..|...+..|..++++|.||+|+||||++++||+.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334444445577778899999999999999999999874
No 140
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.56 E-value=0.018 Score=64.07 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=48.0
Q ss_pred EEEEEccchhhH----HHHHHHHHHHhccC-CCcEEEEEecCCc--cchHHHhhcc-eEeeccCCCHHHHHHHHHH
Q 036742 463 MIVIYEVDKAAE----HIQYLIKWIMDGYT-DSCKLILCCEDDV--DIIESVKTHC-KVIKVDPPVTHEIMEVLIQ 530 (629)
Q Consensus 463 VIIIDEID~Ls~----~~q~aLlrilEe~~-~~~~~ILitN~~~--~I~~aLrSR~-~~I~F~ppt~eei~~iL~~ 530 (629)
||||||+..+.. .....|.++..... ..+.+|++|.++. .+...+++-| ..|-|.--+..+...+|..
T Consensus 300 vlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 300 VVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred EEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 899999977643 34455555555443 3678899999887 3677788776 4677777788887776643
No 141
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.54 E-value=0.029 Score=54.00 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=25.2
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+... ....+..++........+|+.+...
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 49999999998542 3344556665555666666655443
No 142
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.50 E-value=0.0092 Score=62.46 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.|+|.||+|+|||+||..||+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 357899999999999999999986
No 143
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.48 E-value=0.0013 Score=61.36 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|+|+||+||||+|++|++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999999986
No 144
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.47 E-value=0.0017 Score=59.84 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.||+|+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 145
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.47 E-value=0.045 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 036742 382 ILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
|.|.|++|+||||+++.|+..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 146
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.41 E-value=0.051 Score=52.28 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=25.1
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+... ....+..++........+++.+...
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI 191 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC
Confidence 48999999998542 3345556666655566665554433
No 147
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.41 E-value=0.021 Score=54.52 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 377 GNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 377 g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
...+.|+|.|++|+|||+|+.+++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998764
No 148
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.40 E-value=0.0063 Score=60.22 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=51.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhCCCCCCCCCCccccccccCCcceEEEecc-cchhhHHHHHHHHHHHHH---------
Q 036742 382 ILIKGQSGSGKRALAMALLHEIYGDACWNEKWPTQVLVPVASSAHHVELNVN-LQANAKYALMGLVKEIRD--------- 451 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL~g~~~~~~~~~~~v~~~i~sS~~vleInas-~~~~~k~~l~~~lrei~~--------- 451 (629)
.+++||.|+||||.+..++..+.+... .++-+.+. +.+.....+...+.....
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~-----------------kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~ 93 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQ-----------------HAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKD 93 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTC-----------------CEEEEECC-----------------CCEEECSSGGG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC-----------------EEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHH
Confidence 568999999999999888887644332 13333332 111111011111110000
Q ss_pred HhccCcCCCCeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 452 NLAITPEVSNAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 452 ~~~~~~~~~~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+... .....+|+|||+..+..+..+.|..+.+ .+.+||++.-+
T Consensus 94 ~~~~~-~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 94 IFKHI-TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp GGGGC-CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred HHHHH-hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 00000 0123599999999998777776666554 36788888753
No 149
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.38 E-value=0.06 Score=52.37 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=26.1
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+|||||+|.+... ....+..++........+|+.+....
T Consensus 173 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 173 QMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp CEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred cEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 49999999988542 34556666666666666666554433
No 150
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.0022 Score=61.46 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
...|+|.||+||||||++++||+.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3479999999999999999999987
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.31 E-value=0.0025 Score=59.77 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.|+|+|+||+||||++++|+..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999986
No 152
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.29 E-value=0.0023 Score=59.76 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.|+|.||||+||||+|++||+.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999986
No 153
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.28 E-value=0.065 Score=52.12 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=24.0
Q ss_pred eEEEEEccchhhHH--HHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAEH--IQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~~--~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+... ....+..++........+|+.+...
T Consensus 168 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 168 RLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp CEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred CEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 48999999998432 3444555555555566665554433
No 154
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.28 E-value=0.046 Score=53.56 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=24.7
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+... ....+..++........+|+.+...
T Consensus 175 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 175 KMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp CEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred cEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 49999999988542 2344555555555666766655443
No 155
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.26 E-value=0.0021 Score=59.56 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||++++||..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999985
No 156
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.26 E-value=0.054 Score=54.50 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..+...+.+..++.. ...|+.+|+|+|||.++.+++..+
T Consensus 114 l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CCHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 345555566666665 346889999999999998877764
No 157
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.23 E-value=0.086 Score=54.92 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=25.5
Q ss_pred eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+|||||+|.+.. .....+..++........+|+.+-.+.
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 211 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 211 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence 4999999998843 334444555555556677776655443
No 158
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.20 E-value=0.0026 Score=59.53 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.||||+||||+++.|+..+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999874
No 159
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.19 E-value=0.0025 Score=59.70 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
.|+|.|+||+||||+++.|++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999753
No 160
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.17 E-value=0.0032 Score=60.37 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 378 NCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 378 ~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
....++|.||+|+||||++++|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 33468899999999999999999986
No 161
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.16 E-value=0.031 Score=52.98 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 364 RHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 364 e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+...+.+..++.. .++++.+|+|+|||.++..++..+
T Consensus 36 ~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 36 PYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp HHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 4444445555542 469999999999999998887754
No 162
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.15 E-value=0.024 Score=59.15 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+|||+||..+|+.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 57799999999999999999986
No 163
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.15 E-value=0.014 Score=61.91 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+||||+|||++|..+|..+.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998763
No 164
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.15 E-value=0.0051 Score=59.62 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=26.7
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+|+|||++.+.++....+..+.+ .+.++|++.-+
T Consensus 83 dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~ 117 (191)
T 1xx6_A 83 EVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLD 117 (191)
T ss_dssp SEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecc
Confidence 599999999998777777766655 36788888653
No 165
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.14 E-value=0.061 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+|||||+++|+..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999876
No 166
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.13 E-value=0.021 Score=60.83 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+||||+|||++|..+|..+.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHH
Confidence 588999999999999999998763
No 167
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.11 E-value=0.0028 Score=58.76 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.||||+||||+|+.|++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 4789999999999999999983
No 168
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.11 E-value=0.038 Score=55.30 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=24.7
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecC
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+|||||+|.+... ....+..++......+.+|+.+-.
T Consensus 203 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT 241 (262)
T 3ly5_A 203 QCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSAT 241 (262)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSS
T ss_pred CEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEec
Confidence 49999999998553 344455666655566666655443
No 169
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.08 E-value=0.0086 Score=63.27 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+||||+|||++|..++..+.
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999997753
No 170
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.08 E-value=0.003 Score=59.39 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+++.++..+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999986
No 171
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.07 E-value=0.086 Score=53.82 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+..++..+ .++++.+|+|+|||.++...+..+
T Consensus 36 ~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 36 VIPLFLNDE--YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp HHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHH
Confidence 344444432 479999999999999887766554
No 172
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.06 E-value=0.0035 Score=58.88 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.|+|.|+||+||||+|+.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999986
No 173
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.06 E-value=0.0037 Score=57.87 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.+|+|.|++||||||+++.||+.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999987
No 174
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.03 E-value=0.075 Score=52.68 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=25.0
Q ss_pred eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+.. +....+..++........+|+.+...
T Consensus 188 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 188 KYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred CEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence 4899999998854 33444566666555566666555443
No 175
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.02 E-value=0.087 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|.+|+|||+|+.+|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999998754
No 176
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.99 E-value=0.025 Score=63.15 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
|..++..+.+.+..+. ..+|+++|+|+|||.++-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHH
Confidence 4445555555555543 5689999999999999988887764
No 177
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.98 E-value=0.0039 Score=58.45 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 178
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.98 E-value=0.094 Score=56.66 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=27.8
Q ss_pred eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCcc
Q 036742 462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDVD 502 (629)
Q Consensus 462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~~ 502 (629)
.+|||||+|.+.. .....+..++......+++|+.+-.+..
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH
Confidence 4999999998853 4445555666655667777776655443
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.98 E-value=0.021 Score=60.65 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCC---eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 369 LLKELVVDGNCP---HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 369 ~Lk~~L~~g~~p---~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|-.+|-.|.++ .++|+||||+|||||+..++..+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455555423333 478999999999999999998863
No 180
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.97 E-value=0.0039 Score=59.64 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|++|+||||+|+.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999986
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.96 E-value=0.0045 Score=57.20 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|++|+||||+|+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999986
No 182
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.93 E-value=0.0047 Score=58.19 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|+||+||||+++.|++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999986
No 183
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.91 E-value=0.0049 Score=59.81 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|+||+||||+|+.||..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999986
No 184
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.90 E-value=0.018 Score=65.51 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 361 ICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 361 iG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
-.++...+.+..++... +..||+||||||||+++-.+..++.
T Consensus 189 ~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp TCCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHH
Confidence 34777888888888753 3589999999999987666666554
No 185
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.89 E-value=0.15 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
++++.+|+|+|||.++...+-..
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~~ 82 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLEK 82 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHHH
Confidence 59999999999999776655543
No 186
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.88 E-value=0.0065 Score=58.21 Aligned_cols=25 Identities=48% Similarity=0.618 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
..+.|.||+||||||++++|+..+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999874
No 187
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.87 E-value=0.072 Score=55.66 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 365 HEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 365 ~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+...+.-.+..|. .++|.||+|+||||++++++..+
T Consensus 159 ~~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 159 QAISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 45566666666665 58999999999999999999875
No 188
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.87 E-value=0.0046 Score=57.93 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+|+.|+..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.87 E-value=0.022 Score=59.70 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+||||+|||++|..+|..+
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999874
No 190
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.87 E-value=0.0045 Score=59.12 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+|+.|++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 191
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.85 E-value=0.0046 Score=58.82 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|+||+||||+|+.|++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999873
No 192
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.83 E-value=0.0056 Score=57.95 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
..|+|+|++||||||+++.|+..+.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999998434
No 193
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.81 E-value=0.0054 Score=59.63 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.||||+||||+++.||+.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 194
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.81 E-value=0.0073 Score=61.90 Aligned_cols=23 Identities=43% Similarity=0.692 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||||+||||+|+.++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999985
No 195
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.79 E-value=0.0047 Score=58.28 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|+||+||||+|+.|++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999986
No 196
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.79 E-value=0.066 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+|+.|+..+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999863
No 197
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.75 E-value=0.027 Score=71.40 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+||||||||++|.+++.+..
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998764
No 198
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.75 E-value=0.0054 Score=57.94 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 199
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.74 E-value=0.0039 Score=58.71 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|.||+|+||||++++|+..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999986
No 200
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.74 E-value=0.0056 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||++++|+..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999886
No 201
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.73 E-value=0.037 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAke 402 (629)
..|+|.|++|+|||+|+.+|+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 36999999999999999998864
No 202
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.73 E-value=0.0053 Score=57.39 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+|+.|+..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 203
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.72 E-value=0.017 Score=62.37 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|+|+||+||||+|+.++..+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999999999875
No 204
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.72 E-value=0.2 Score=49.01 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=25.6
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecC
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+|||||+|.+... ....+..++........+++.+..
T Consensus 178 ~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 178 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp CEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred cEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 49999999998653 345556666666666666665443
No 205
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.70 E-value=0.007 Score=59.49 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|+||+||||+|+.||+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999986
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.68 E-value=0.077 Score=57.74 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||+|+||||++..+|..+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999998874
No 207
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.68 E-value=0.011 Score=58.76 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.||||+||||+|+.|++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999886
No 208
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.67 E-value=0.0085 Score=59.86 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||||+||||+|+.|+..+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999999986
No 209
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.66 E-value=0.0036 Score=58.42 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|+||+||||+|+.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368899999999999999999986
No 210
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.64 E-value=0.16 Score=52.64 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=25.8
Q ss_pred eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+.. .....+..++........+|+.+..+
T Consensus 154 ~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 194 (391)
T 1xti_A 154 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 194 (391)
T ss_dssp SEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSC
T ss_pred CEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeC
Confidence 4899999999854 44455666666555566666655443
No 211
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.63 E-value=0.0066 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|++|+||||+|+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 212
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.61 E-value=0.0051 Score=60.07 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|+||+||||+|+.|++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999985
No 213
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.57 E-value=0.022 Score=54.29 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke 402 (629)
+++...+.+..+......-.|+|.|++|+|||+|+..+...
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34444555555554444447999999999999999988864
No 214
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.57 E-value=0.0065 Score=58.04 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||+++.|++.+.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999874
No 215
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.55 E-value=0.047 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 216
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.53 E-value=0.007 Score=57.68 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|++|+||||+++.|++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999885
No 217
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.52 E-value=0.0076 Score=56.46 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999873
No 218
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.52 E-value=0.007 Score=58.83 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|+||+||||+|+.||..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999987
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.49 E-value=0.0064 Score=58.44 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||+++.|+..+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999986
No 220
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.074 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|++|+|||+|+..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.48 E-value=0.1 Score=56.96 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
.|+|.|++|+||||++..+|..+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998753
No 222
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.45 E-value=0.0077 Score=58.22 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|+||+||||+|+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 223
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.45 E-value=0.0074 Score=56.94 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||++++|+..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 36799999999999999999754
No 224
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.44 E-value=0.0085 Score=59.26 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.|+|.||||+||+|.|+.|++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999986
No 225
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.44 E-value=0.061 Score=56.41 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHH----cCCCC-eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 370 LKELVV----DGNCP-HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 370 Lk~~L~----~g~~p-~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
|-.+|- .|-.+ .++|+||||+|||+|+..++..+.
T Consensus 14 LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 14 MNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp HHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 445555 34333 367999999999999988877653
No 226
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.43 E-value=0.23 Score=47.86 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=24.7
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecC
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+|||||+|.+... ....+..++........+++.+-.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence 49999999998543 234455556555566666665544
No 227
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.43 E-value=0.01 Score=57.27 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.|.||+|+|||||+++|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999999874
No 228
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.42 E-value=0.026 Score=55.31 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
-|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3899999999999999988753
No 229
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.42 E-value=0.0078 Score=57.49 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||+++.|++.+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999874
No 230
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.41 E-value=0.0083 Score=58.00 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|.|.||+||||||+++.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 231
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.40 E-value=0.071 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.39 E-value=0.0087 Score=56.35 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||+++.++..+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999874
No 233
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.39 E-value=0.01 Score=57.05 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=36.9
Q ss_pred cccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 359 GFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 359 dIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+-.+.+..+.+...+.....+.++|.|++|+||||++..++..+
T Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 10 LLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344566777778887776677889999999999999999999886
No 234
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.38 E-value=0.073 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 235
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.35 E-value=0.0087 Score=59.22 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..++|.||+|+||||++++|++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999886
No 236
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.11 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 237
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.34 E-value=0.0091 Score=58.42 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.||||+||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 238
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.31 E-value=0.035 Score=50.01 Aligned_cols=22 Identities=14% Similarity=0.533 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998864
No 239
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.29 E-value=0.02 Score=61.98 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=35.8
Q ss_pred CCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 355 SSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 355 ~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+++++.........|..++. .....++|.||.|+||||++++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 345666555555666777653 2333588999999999999999999874
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.27 E-value=0.0096 Score=56.17 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+||||++++|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999874
No 241
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.26 E-value=0.023 Score=54.51 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCC---CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 365 HEAQLLKELVVDGNC---PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 365 ~~~~~Lk~~L~~g~~---p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.++.|.+.+..... ..+.|.||+|+||||+++.|+..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555553221 247799999999999999999986
No 242
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.25 E-value=0.14 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAke 402 (629)
+.|+|.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998754
No 243
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.24 E-value=0.05 Score=50.15 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 244
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.20 E-value=0.062 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.20 E-value=0.01 Score=56.28 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+||||++++|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47799999999999999999874
No 246
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.19 E-value=0.057 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 247
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.18 E-value=0.19 Score=46.51 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|++.++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 248
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.18 E-value=0.11 Score=56.92 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=26.6
Q ss_pred eEEEEEccchhhH--HHHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 462 AMIVIYEVDKAAE--HIQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 462 kVIIIDEID~Ls~--~~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+|||||+|.+.. .....+..++.......++|+.+..+.
T Consensus 261 ~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS 302 (508)
T ss_dssp CEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCS
T ss_pred CEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCC
Confidence 4999999999854 344455556665666777776665544
No 249
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.16 E-value=0.0082 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|++|+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999986
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.14 E-value=0.011 Score=56.22 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+||||+++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999875
No 251
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.14 E-value=0.095 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 252
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.08 E-value=0.29 Score=53.13 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+...+.+..++.. ..+|++||+|+|||.++..++..+
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 34455555556554 468999999999999998777664
No 253
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.08 E-value=0.021 Score=55.09 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
..|+|.|++|+||||+++.|+..+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999874
No 254
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.08 E-value=0.19 Score=52.65 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=25.5
Q ss_pred eEEEEEccchhhH-HHHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAE-HIQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~-~~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+.. +....+..++........+|+.+-.+
T Consensus 181 ~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 220 (410)
T 2j0s_A 181 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 220 (410)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred eEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCC
Confidence 4999999998743 33455566666555666666655443
No 255
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.07 E-value=0.029 Score=61.24 Aligned_cols=35 Identities=6% Similarity=-0.215 Sum_probs=26.6
Q ss_pred CeEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 461 NAMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 461 ~kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
..+|||||+-.+..+...++..++. ...+|+....
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~ 269 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDT 269 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCc
Confidence 4599999999998888877766543 2677877654
No 256
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.05 E-value=0.028 Score=51.28 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|+|.|++|+|||+|+.++..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998864
No 257
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.04 E-value=0.2 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
++|+.+|+|+|||..+-+++..+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999998887765
No 258
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.01 E-value=0.063 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 259
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.99 E-value=0.023 Score=54.69 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+++..+.++..+.....+.++|.|++|+||||++..++..++
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 355667777777766677899999999999999999998864
No 260
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.99 E-value=0.23 Score=47.39 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 261
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.97 E-value=0.51 Score=45.94 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.2
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALL 400 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLA 400 (629)
++++.+|+|+|||..+...+
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~ 87 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPI 87 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 59999999999998754433
No 262
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.97 E-value=0.16 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998864
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.96 E-value=0.012 Score=56.79 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||++++|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57899999999999999999875
No 264
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.96 E-value=0.014 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.|++|+||||++++++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999986
No 265
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.95 E-value=0.063 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 266
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.93 E-value=0.075 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
No 267
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.93 E-value=0.057 Score=59.82 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHH--HHHH
Q 036742 381 HILIKGQSGSGKRALAMAL--LHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraL--AkeL 403 (629)
.++|.||+|+|||||++++ +..+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999994 4544
No 268
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.28 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
++++.+|+|+|||.++...+.+.
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~~ 55 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHhh
Confidence 69999999999999877666553
No 269
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.90 E-value=0.23 Score=57.76 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 369 LLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 369 ~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke 402 (629)
.+..++..+. .+++.||+|+|||+++..++..
T Consensus 101 ~i~~~l~~~~--~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 101 EFLKLYQNNQ--IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCC--eEEEECCCCCCHHHHHHHHHHH
Confidence 4455555543 6999999999999977776544
No 270
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.90 E-value=0.17 Score=52.32 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=25.8
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCCc
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDDV 501 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~~ 501 (629)
.+|||||+|.+... ....+..++........+|+.+..+.
T Consensus 164 ~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 204 (394)
T 1fuu_A 164 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 204 (394)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred cEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecC
Confidence 49999999998542 33445555555556677776655543
No 271
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.89 E-value=0.057 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998865
No 272
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.88 E-value=0.1 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999988753
No 273
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.87 E-value=0.14 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 274
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.86 E-value=0.055 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 275
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.85 E-value=0.037 Score=54.81 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=26.7
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEe
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCC 497 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILit 497 (629)
.+|+|||++-+..+....+..+.+ .+.+||+..
T Consensus 103 dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 103 DVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp SEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred CEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 499999999999888888888774 467777765
No 276
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.85 E-value=0.013 Score=55.41 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+||||++++|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47799999999999999999875
No 277
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.85 E-value=0.18 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAke 402 (629)
...++|.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998754
No 278
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.82 E-value=0.016 Score=55.58 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+||||+++.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999765
No 279
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.82 E-value=0.0089 Score=57.14 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|.|.|++|+||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 280
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.81 E-value=0.054 Score=48.96 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|+|.|++|+|||+|+..++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999864
No 281
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.81 E-value=0.098 Score=48.95 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=4.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998865
No 282
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.80 E-value=0.057 Score=54.02 Aligned_cols=34 Identities=21% Similarity=0.043 Sum_probs=24.4
Q ss_pred eEEEEEccchhhHHHHHHHHHHHhccCCCcEEEEEecC
Q 036742 462 AMIVIYEVDKAAEHIQYLIKWIMDGYTDSCKLILCCED 499 (629)
Q Consensus 462 kVIIIDEID~Ls~~~q~aLlrilEe~~~~~~~ILitN~ 499 (629)
.+|+|||+..+.. ...+.+++.. .+..||++.-+
T Consensus 92 dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 92 AVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp SEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred CEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 4999999999974 4444555554 56788888755
No 283
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.76 E-value=0.55 Score=41.66 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988864
No 284
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.15 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 285
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.74 E-value=0.27 Score=51.22 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=27.0
Q ss_pred eEEEEEccchhhHH-HHHHHHHHHhccCCCcEEEEEecCC
Q 036742 462 AMIVIYEVDKAAEH-IQYLIKWIMDGYTDSCKLILCCEDD 500 (629)
Q Consensus 462 kVIIIDEID~Ls~~-~q~aLlrilEe~~~~~~~ILitN~~ 500 (629)
.+|||||+|.+... ....+..++........+|+.+-.+
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 224 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 224 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCC
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 49999999998543 3455666666666677777766554
No 286
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.73 E-value=0.014 Score=55.49 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|.|.|++|+||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 478999999999999999998
No 287
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.73 E-value=0.045 Score=49.24 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 288
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.72 E-value=0.13 Score=47.73 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.71 E-value=0.02 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|.|.|++|+||||+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999986
No 290
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.66 E-value=0.13 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 291
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.63 E-value=0.019 Score=55.19 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+|||||+++|++.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999875
No 292
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.57 E-value=0.02 Score=57.23 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+||||+++.|++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.57 E-value=0.02 Score=55.23 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|+||+|+|||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998874
No 294
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.56 E-value=0.016 Score=55.46 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.+.|.||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987
No 295
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.55 E-value=0.18 Score=57.63 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALL 400 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLA 400 (629)
.+++++||+|+|||+.+-..+
T Consensus 47 ~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHH
Confidence 479999999999999985444
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.53 E-value=0.041 Score=56.53 Aligned_cols=24 Identities=25% Similarity=0.539 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|.|.||+|+||||+|+.|+..+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999874
No 297
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.52 E-value=0.098 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 298
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.52 E-value=0.1 Score=47.80 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998854
No 299
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.46 E-value=0.02 Score=54.74 Aligned_cols=23 Identities=43% Similarity=0.509 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+||||+++.|+..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999986
No 300
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.46 E-value=0.16 Score=54.69 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 362 CHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 362 G~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
-.+...+.+..++..+ .+|++||+|+|||.++.+++..+
T Consensus 94 l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3455556666666543 59999999999999998888775
No 301
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.26 Score=59.70 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..+|++||.|+|||.++...+...
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~ 223 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQS 223 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHH
Confidence 369999999999999876655443
No 302
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.076 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.566 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 303
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.42 E-value=0.32 Score=50.11 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 369 LLKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 369 ~Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|-.++ .|-.+ -++|.|+||+|||++|..+|..+.
T Consensus 57 ~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 57 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344445 34333 488999999999999999997753
No 304
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.40 E-value=0.05 Score=49.48 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998854
No 305
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.39 E-value=0.079 Score=49.98 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998854
No 306
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.39 E-value=0.14 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999998864
No 307
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.38 E-value=0.024 Score=57.18 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
.|+|.|++|+||||++++||+.+ +.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l-g~ 74 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL-GY 74 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH-TC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-CC
Confidence 69999999999999999999987 44
No 308
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.36 E-value=0.021 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+|||||+++|+..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47799999999999999999975
No 309
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.34 E-value=0.19 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 310
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.33 E-value=0.056 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998854
No 311
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.33 E-value=0.059 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=9.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
No 312
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.33 E-value=0.072 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 313
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.32 E-value=0.25 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 314
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.31 E-value=0.078 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 315
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.30 E-value=0.11 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998754
No 316
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.29 E-value=0.086 Score=49.96 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999998754
No 317
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.28 E-value=0.11 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.27 E-value=0.024 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.389 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|.|.|++|+||||+++.|++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5789999999999999999986
No 319
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.26 E-value=0.091 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 320
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.26 E-value=0.11 Score=49.53 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAke 402 (629)
.+.|+|.|++|+|||+|+.++...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999988754
No 321
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.25 E-value=0.15 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|.|.||+|+|||||+++|+...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.19 E-value=0.13 Score=45.68 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|++.|++|+|||+++..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 323
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.18 E-value=0.027 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.||+|+||||+++.|+..+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999974
No 324
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.15 E-value=0.031 Score=52.32 Aligned_cols=18 Identities=39% Similarity=0.635 Sum_probs=16.3
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMA 398 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAra 398 (629)
.+.|.||+|+||||++++
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999994
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.14 E-value=0.025 Score=56.28 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|.|.|++|+||||+|+.|+..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 326
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.14 E-value=0.035 Score=56.11 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||.|+||||++++++..+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 588999999999999999999763
No 327
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.14 E-value=0.075 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998864
No 328
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.13 E-value=0.027 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+|||||+++|++.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57899999999999999999874
No 329
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.11 E-value=0.024 Score=55.30 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+|||||+++|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999975
No 330
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.10 E-value=0.025 Score=56.48 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|.|.||+|+||||++++||+.|
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999886
No 331
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.09 E-value=0.1 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998754
No 332
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.08 E-value=0.062 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 333
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.13 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 334
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.99 E-value=0.029 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47799999999999999999987
No 335
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.97 E-value=0.032 Score=53.66 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=40.2
Q ss_pred CCeEEEEEccchh---hHHHHHHHHHHHhccCCCcEEEE--Ee--cCCc-cchHHHhhc--ceEeeccCCCHHHHHHHH
Q 036742 460 SNAMIVIYEVDKA---AEHIQYLIKWIMDGYTDSCKLIL--CC--EDDV-DIIESVKTH--CKVIKVDPPVTHEIMEVL 528 (629)
Q Consensus 460 ~~kVIIIDEID~L---s~~~q~aLlrilEe~~~~~~~IL--it--N~~~-~I~~aLrSR--~~~I~F~ppt~eei~~iL 528 (629)
...||||||++.+ .......|..+++.+ ..+|+ ++ ++.. .+.+.+..+ +.++.+..-+.+.+...+
T Consensus 105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp CCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred CCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 3459999998777 345677777787743 22443 22 3332 456666664 467777766655555444
No 336
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.97 E-value=0.16 Score=55.70 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
+++.|..+++.+ .++|+||+|+|||+|+..++....
T Consensus 141 ~ID~L~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLLAPYIKGG---KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHSCEETTC---EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCC---EEEEECCCCCCccHHHHHHHhhhh
Confidence 445554444432 589999999999999999988753
No 337
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.97 E-value=0.027 Score=62.53 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
...++..|.-.+..|. .++|.||+|+||||++++++..+
T Consensus 246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 3556677777777765 49999999999999999999875
No 338
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.93 E-value=0.061 Score=50.67 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|+|.|++|+|||+|++.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999986654
No 339
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.12 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..++..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 340
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.90 E-value=0.086 Score=66.11 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+||||||||++|..++...
T Consensus 36 i~lI~G~pGsGKT~LAlqla~~~ 58 (1706)
T 3cmw_A 36 IVEIYGPESSGKTTLTLQVIAAA 58 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.89 E-value=0.024 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.|++|+||||+++.|++.+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999864
No 342
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.82 E-value=0.15 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 343
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.80 E-value=0.22 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 344
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.80 E-value=0.63 Score=56.56 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke 402 (629)
|..++..+...+..|....+|++||.|+|||.+|...|-.
T Consensus 608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~ 647 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 647 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHH
Confidence 4445555555555666558999999999999988755544
No 345
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.74 E-value=0.059 Score=61.05 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++...+.+...+. .+.+++.||||||||+++..++..+.
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 5666666766664 24689999999999999888887764
No 346
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.72 E-value=0.11 Score=47.95 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 347
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.71 E-value=0.035 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||||+|||+++..+|..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999888765
No 348
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.70 E-value=0.17 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998864
No 349
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.67 E-value=0.12 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 350
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.67 E-value=0.23 Score=57.74 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||.|+||||+.+.++..+
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 47799999999999999999864
No 351
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.66 E-value=0.15 Score=47.62 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888764
No 352
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.61 E-value=0.092 Score=48.02 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
No 353
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.61 Score=55.86 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
++|+.+|.|+|||.++...+..
T Consensus 103 ~vLV~apTGSGKTlva~lai~~ 124 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQ 124 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 6999999999999987554433
No 354
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.58 E-value=0.046 Score=60.73 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHH--HcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 363 HRHEAQLLKELV--VDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 363 ~e~~~~~Lk~~L--~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
..++.+.|.+.. .......|+|.|.+||||||+|++||+.|.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 466677777766 222233688999999999999999999984
No 355
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.54 E-value=0.038 Score=53.29 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|.|.|++|+||||+++.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 356
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.53 E-value=0.27 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999864
No 357
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.53 E-value=0.036 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999875
No 358
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.52 E-value=0.038 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|+||+|+|||||+..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998654
No 359
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.52 E-value=1.3 Score=47.41 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMA 398 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAra 398 (629)
.++++.+|+|+|||..+..
T Consensus 94 ~d~i~~a~TGsGKT~a~~l 112 (434)
T 2db3_A 94 RDLMACAQTGSGKTAAFLL 112 (434)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHH
Confidence 3699999999999995443
No 360
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.51 E-value=0.16 Score=45.71 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.++|.|++|+|||+|++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998863
No 361
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.50 E-value=0.23 Score=45.76 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998854
No 362
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.49 E-value=0.91 Score=44.38 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALL 400 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLA 400 (629)
.++++.+|+|+|||.++...+
T Consensus 61 ~~~l~~a~TGsGKT~~~~~~~ 81 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFLIPI 81 (253)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 369999999999998655433
No 363
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.12 Score=49.13 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 364
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.45 E-value=0.025 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=14.7
Q ss_pred eEEEEcCCCCcHHHHHHHHH-HHH
Q 036742 381 HILIKGQSGSGKRALAMALL-HEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLA-keL 403 (629)
.+.|.||+|+||||++++|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47799999999999999999 764
No 365
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.45 E-value=0.052 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++.+.|.|++|+||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 55688999999999999999999874
No 366
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.44 E-value=0.04 Score=55.91 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||||+||||+++.+|..+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998864
No 367
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.39 E-value=0.029 Score=59.15 Aligned_cols=26 Identities=23% Similarity=0.407 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
+.|+|.||+|+|||+|+..||+.+.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 36889999999999999999998743
No 368
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.34 E-value=0.046 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+-|.||.|+||||++++|+..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46699999999999999999976
No 369
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.33 E-value=0.11 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..++..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 370
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.28 E-value=0.37 Score=54.98 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALL 400 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLA 400 (629)
.++++.||+|+|||+.+...+
T Consensus 41 ~~~lv~apTGsGKT~~~~l~i 61 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAM 61 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHH
Confidence 479999999999999885443
No 371
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.26 E-value=0.058 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 379 CPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.++|.||+|+||||++..++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46788999999999999999998864
No 372
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.25 E-value=0.13 Score=48.80 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.24 E-value=0.051 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
|.|+|++||||||+++.++..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6799999999999999999975
No 374
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.23 E-value=0.1 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998854
No 375
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.22 E-value=0.18 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 376
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.18 E-value=0.063 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|.|.|++|+||||+++.|+..+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999986
No 377
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.18 E-value=0.047 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|.|.|++|+||||+++.|+..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999999985
No 378
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.17 E-value=0.06 Score=55.70 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.|.||.||||||+++.+|..+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 577999999999999999999874
No 379
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.08 E-value=0.13 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|+|.|++|+|||+|+..++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998753
No 380
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.06 E-value=0.83 Score=49.30 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCC--eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 369 LLKELVVDGNCP--HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 369 ~Lk~~L~~g~~p--~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|-.++ .|-.+ -++|.|+||+|||++|..+|..+.
T Consensus 189 ~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344555 44333 488999999999999999998763
No 381
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.03 E-value=0.55 Score=44.35 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAke 402 (629)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999865
No 382
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.02 E-value=0.32 Score=52.36 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=24.2
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 376 DGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 376 ~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
-+....++|.||+|||||+|++.|++.+.
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 33444799999999999999999998763
No 383
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.02 E-value=0.096 Score=48.69 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAke 402 (629)
...|+|.|++|+|||+++.+++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999865
No 384
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.94 E-value=0.067 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999995443
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.94 E-value=0.054 Score=50.48 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
..+|+||.|+|||+++.+|+..+.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4679999999999999999988643
No 386
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.94 E-value=0.12 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.|.||+||||||++++|+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 466999999999999999998863
No 387
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.93 E-value=0.055 Score=56.16 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.|.||+|+|||||+++|+..+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 466999999999999999999874
No 388
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.92 E-value=0.45 Score=54.47 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHH-HHHHHH
Q 036742 380 PHILIKGQSGSGKRALAM-ALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAr-aLAkeL 403 (629)
.++|+.||+|+|||+++. ++...+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 479999999999999884 444443
No 389
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.91 E-value=0.056 Score=56.11 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+|||||+++|++.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 57899999999999999999987
No 390
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.89 E-value=0.18 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|+|.|++|+|||+|+..+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999998874
No 391
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.86 E-value=0.052 Score=57.26 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.||+|+|||++|..||..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 578999999999999999999863
No 392
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.80 E-value=0.24 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAke 402 (629)
..|+|.|++|+|||||+..+...
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999998753
No 393
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.73 E-value=0.35 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCcHHHHH-HHHHHH
Q 036742 380 PHILIKGQSGSGKRALA-MALLHE 402 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLA-raLAke 402 (629)
.++|+.||+|+|||.++ .++...
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~ 26 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVRE 26 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999986 445433
No 394
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.72 E-value=0.1 Score=61.09 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
++...+.+...+.. +.++|.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 56666666666643 46899999999999998888877653
No 395
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.68 E-value=0.065 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAke 402 (629)
+.++|.|++|+|||+++..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 396
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.66 E-value=0.11 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.|.||+|+||||++++|+..+.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999863
No 397
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.62 E-value=0.33 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999864
No 398
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.62 E-value=0.37 Score=48.33 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALL 400 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLA 400 (629)
.|+|.|.+|+|||||+.++.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999864
No 399
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.58 E-value=0.07 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
.|.|.|++|+||||+++.|+..+...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 47799999999999999999998543
No 400
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.58 E-value=0.41 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
-++|.|+||+|||++|..+|..+.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998763
No 401
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.49 E-value=0.35 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAke 402 (629)
..|+|.|++|+|||+|+.++...
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998854
No 402
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.47 E-value=0.12 Score=54.20 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=25.0
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 376 DGNCPHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 376 ~g~~p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
.+..+.|.|.|+||+||||++..++..+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344557889999999999999999988743
No 403
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.44 E-value=0.071 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|+|+||+|||++|..+|..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999887754
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.43 E-value=0.069 Score=56.72 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||+|+||||++++++..+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 588999999999999999999864
No 405
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.41 E-value=0.44 Score=44.16 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999988765
No 406
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.36 E-value=0.053 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
+.+.|.||+|+|||||+++|++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999998743
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.35 E-value=0.06 Score=54.77 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|.|.|++|+||||+|+.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999994
No 408
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.34 E-value=0.69 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|...+...
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999987653
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.30 E-value=0.054 Score=53.11 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||+|+|||++|..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999874
No 410
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.26 E-value=0.18 Score=58.86 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.||.|+||||+.++++...
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999999764
No 411
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.26 E-value=0.087 Score=55.66 Aligned_cols=34 Identities=38% Similarity=0.596 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
+.+.-.+..|. .++|.||.|+||||++++++..+
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 45555556665 58999999999999999999875
No 412
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.24 E-value=0.078 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.|.||.|+||||+++.+|..+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999874
No 413
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.23 E-value=0.077 Score=59.47 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH--cCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 364 RHEAQLLKELVV--DGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 364 e~~~~~Lk~~L~--~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++.+.+..... -.....+.|.|++|+||||++++|++.+.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 345555555431 11122578999999999999999999974
No 414
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.20 E-value=0.4 Score=56.86 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|.||.|+||||+.+.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 4789999999999999998754
No 415
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.20 E-value=1.5 Score=48.02 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHH
Q 036742 368 QLLKELVVDGNCPHILIKGQSGSGKRALAMAL 399 (629)
Q Consensus 368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraL 399 (629)
+.+..++ .+....+|+.+|+|+|||..+...
T Consensus 101 ~~i~~~l-~~~~~~~lv~apTGsGKTl~~~lp 131 (563)
T 3i5x_A 101 KTIKPIL-SSEDHDVIARAKTGTGKTFAFLIP 131 (563)
T ss_dssp HHHHHHH-SSSSEEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHh-cCCCCeEEEECCCCCCccHHHHHH
Confidence 3444444 233457999999999999865543
No 416
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.17 E-value=0.066 Score=52.63 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||+++.|++.+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999874
No 417
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.13 E-value=0.08 Score=49.94 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|.|++|+|||||++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 418
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.04 E-value=0.084 Score=55.27 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.|.||+|+||||+++.||..+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999999864
No 419
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.03 E-value=0.079 Score=58.89 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|.||+||||+|+.|++.+.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999873
No 420
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.98 E-value=0.072 Score=56.04 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|+||+|+|||||++.++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999875
No 421
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.96 E-value=0.087 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||+|+||||++..+|..+.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHH
Confidence 477999999999999999998874
No 422
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.90 E-value=0.067 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.||+|+||||+++.|+..+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999874
No 423
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.85 E-value=0.13 Score=60.10 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 363 HRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 363 ~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
++...+.+...+. .+.+|+.||||||||+++..++..+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 5666666666654 3468999999999999887776655
No 424
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.78 E-value=0.085 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|.|++|+|||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 425
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.71 E-value=0.082 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||+|+|||||+++|++.+
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 426
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.70 E-value=0.074 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47799999999999999999764
No 427
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.70 E-value=0.082 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+||||+|||++|..+|..+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999874
No 428
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.69 E-value=0.067 Score=52.22 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=29.3
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 351 KHQPSSLNGFICHRHEAQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 351 KyrP~tfddIiG~e~~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLAke 402 (629)
..+|+++.+ ..+++. +..|. .+.|.||.|+|||||+++++..
T Consensus 4 ~i~pk~~g~----~~~l~~----i~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLGQ----KHYVDA----IDTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHHH----HHHHHH----HHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHhH----HHHHHh----ccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 456766643 223332 34554 4779999999999999999986
No 429
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.69 E-value=0.43 Score=56.70 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.++|.||.|+||||+.+.++.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 430
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.68 E-value=0.17 Score=55.89 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||.|+||||++++|+..+.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhh
Confidence 477999999999999999999864
No 431
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.60 E-value=0.095 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.++|.||+|+||||++..+|..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998874
No 432
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.60 E-value=0.037 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..|+|.|++|+||||+++.|+..+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368899999999999999999886
No 433
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.59 E-value=0.08 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46799999999999999999864
No 434
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.59 E-value=0.09 Score=52.45 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
..+.|.||.|+|||||+++++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357799999999999999999865
No 435
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.58 E-value=0.072 Score=52.41 Aligned_cols=23 Identities=39% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999764
No 436
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.49 E-value=0.1 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
.|+|.|++|+||||+++.++..+..
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998753
No 437
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.47 E-value=0.61 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|.+|+|||+|+.++...
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 438
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.36 E-value=0.084 Score=52.43 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=31.9
Q ss_pred eEEEEEccch-hhHHHHHHHHHHHh---ccCCCcEEEEEecCCccchHHHhhcceE
Q 036742 462 AMIVIYEVDK-AAEHIQYLIKWIMD---GYTDSCKLILCCEDDVDIIESVKTHCKV 513 (629)
Q Consensus 462 kVIIIDEID~-Ls~~~q~aLlrilE---e~~~~~~~ILitN~~~~I~~aLrSR~~~ 513 (629)
+|||+||.-. |.......+...+. .......+|+++++...+. +..|+.+
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~--~~d~v~~ 200 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP--QVDVIIV 200 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG--GSSEEEE
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH--hCCEEEE
Confidence 4999999865 55666666666662 3334567888888876542 3445433
No 439
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.35 E-value=2.1 Score=47.45 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHH
Q 036742 368 QLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400 (629)
Q Consensus 368 ~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLA 400 (629)
+.+..++. +....+|+.+|+|+|||.++...+
T Consensus 50 ~~i~~il~-~~~~dvlv~apTGsGKTl~~~lpi 81 (579)
T 3sqw_A 50 KTIKPILS-SEDHDVIARAKTGTGKTFAFLIPI 81 (579)
T ss_dssp HHHHHHHC-SSSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHc-cCCCeEEEEcCCCcHHHHHHHHHH
Confidence 34444442 233479999999999998655443
No 440
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.33 E-value=3.3 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+.+|+|+|||..+...+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 369999999999999887766554
No 441
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.31 E-value=0.61 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.+.|.|.||+|||||+.++...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998854
No 442
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.31 E-value=0.15 Score=56.98 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHH--HcCCCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 363 HRHEAQLLKELV--VDGNCPHILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 363 ~e~~~~~Lk~~L--~~g~~p~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
..++.+.+.... .......|+|.|++|+||||+|+.|++.+.
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 355666677666 222223578999999999999999999874
No 443
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.31 E-value=0.92 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
-++|.|+||+|||++|..+|..+.
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Confidence 488999999999999999998763
No 444
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.28 E-value=0.12 Score=58.24 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=28.2
Q ss_pred HHHHHHHHHHH-cCCCC-eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 365 HEAQLLKELVV-DGNCP-HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 365 ~~~~~Lk~~L~-~g~~p-~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
++.+.+++.+. .+..+ .|+|.|++|+||||+|++|++.+.
T Consensus 380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 34444444441 12222 578999999999999999999975
No 445
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.28 E-value=0.1 Score=50.44 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhCCC
Q 036742 380 PHILIKGQSGSGKRALAMALLHEIYGDA 407 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL~g~~ 407 (629)
+.|.|.||+|||||++++.||+.| |..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l-g~~ 33 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY-NIP 33 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh-CcC
Confidence 357899999999999999999997 543
No 446
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.27 E-value=0.069 Score=54.72 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|.|.||+|+||||+|+.|+..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 577999999999999999998763
No 447
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=91.21 E-value=1.3 Score=55.95 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEcCCCCcHHHHHHHHH
Q 036742 366 EAQLLKELVVDGNCPHILIKGQSGSGKRALAMALL 400 (629)
Q Consensus 366 ~~~~Lk~~L~~g~~p~ILL~GPPGtGKTtLAraLA 400 (629)
..+.+..++..+. ++|+.+|.|+|||.+|....
T Consensus 931 Q~q~~~~l~~~~~--nvlv~APTGSGKTliaelai 963 (1724)
T 4f92_B 931 QTQVFNTVYNSDD--NVFVGAPTGSGKTICAEFAI 963 (1724)
T ss_dssp HHHHHHHHHSCCS--CEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCC--cEEEEeCCCCCchHHHHHHH
Confidence 3344555555443 79999999999999887544
No 448
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.18 E-value=0.11 Score=56.15 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.||+|+|||+||..||..+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 578999999999999999999874
No 449
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.18 E-value=0.12 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.+.|.||.|+||||+++.||..+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Confidence 477999999999999999999874
No 450
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.16 E-value=0.12 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||+++.++..+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999999974
No 451
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.11 E-value=0.97 Score=49.45 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
-++|.|+||+|||++|..+|..+.
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHT
T ss_pred EEEEeecCCCCchHHHHHHHHHHH
Confidence 478999999999999999998863
No 452
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.07 E-value=0.1 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999999864
No 453
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.07 E-value=0.13 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 036742 382 ILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 382 ILL~GPPGtGKTtLAraLAkeL 403 (629)
+-|.||||+||||+|+.|++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999986
No 454
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.06 E-value=0.12 Score=50.62 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
.|.|.|++|+||||+++.++..+...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999988533
No 455
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.05 E-value=0.092 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999864
No 456
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.02 E-value=0.11 Score=55.75 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 46799999999999999999864
No 457
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.00 E-value=0.11 Score=55.30 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46799999999999999999864
No 458
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.99 E-value=0.11 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46799999999999999999864
No 459
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.98 E-value=0.13 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYG 405 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g 405 (629)
.|.|.|++|+||||+++.+++.+..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999998743
No 460
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.97 E-value=0.1 Score=48.60 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999886
No 461
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.96 E-value=0.11 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+||||+|||++|..+|..+
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999763
No 462
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.94 E-value=0.12 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|.||+||||+++.+++.+.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999874
No 463
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.90 E-value=0.1 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++++..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999764
No 464
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.86 E-value=0.12 Score=51.75 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=27.4
Q ss_pred EEEEEccch-hhHHHHHHHHHHHhccC-CCcEEEEEecCCccc
Q 036742 463 MIVIYEVDK-AAEHIQYLIKWIMDGYT-DSCKLILCCEDDVDI 503 (629)
Q Consensus 463 VIIIDEID~-Ls~~~q~aLlrilEe~~-~~~~~ILitN~~~~I 503 (629)
|||+||.-. |.......+..++.... .+..+|+++++...+
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999765 45555556666655442 356788888876543
No 465
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.85 E-value=0.11 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46799999999999999999864
No 466
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.85 E-value=0.12 Score=52.40 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=28.8
Q ss_pred EEEEEccch-hhHHHHHHHHHHHhccC-CCcEEEEEecCCccc
Q 036742 463 MIVIYEVDK-AAEHIQYLIKWIMDGYT-DSCKLILCCEDDVDI 503 (629)
Q Consensus 463 VIIIDEID~-Ls~~~q~aLlrilEe~~-~~~~~ILitN~~~~I 503 (629)
|||+||.-. |.......+..++.... ....+|+++++...+
T Consensus 185 lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~ 227 (267)
T 2zu0_C 185 LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL 227 (267)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH
Confidence 999999865 56666677777776553 356688888876543
No 467
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.81 E-value=0.1 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999864
No 468
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.80 E-value=0.11 Score=55.23 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 46799999999999999999864
No 469
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.76 E-value=0.1 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999864
No 470
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.69 E-value=0.13 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|.|++|+|||+|+++++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999853
No 471
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.69 E-value=0.11 Score=55.89 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|+||||||||||++.++-.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999987754
No 472
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.67 E-value=0.11 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999864
No 473
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.63 E-value=0.097 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 46799999999999999999864
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.61 E-value=0.11 Score=51.99 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999864
No 475
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.57 E-value=0.11 Score=51.25 Aligned_cols=41 Identities=7% Similarity=-0.176 Sum_probs=27.3
Q ss_pred eEEEEEccch-hhHHHHHHHHHH-HhccCCCcEEEEEecCCcc
Q 036742 462 AMIVIYEVDK-AAEHIQYLIKWI-MDGYTDSCKLILCCEDDVD 502 (629)
Q Consensus 462 kVIIIDEID~-Ls~~~q~aLlri-lEe~~~~~~~ILitN~~~~ 502 (629)
.|||+||.-. |.......+... +........+|+++++...
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 4999999765 456666666664 4444445678888877543
No 476
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.51 E-value=0.11 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47799999999999999999864
No 477
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.50 E-value=0.14 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
++||.|++|+||||+|.++...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 6999999999999999999874
No 478
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.45 E-value=0.11 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47799999999999999999864
No 479
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.38 E-value=0.18 Score=46.23 Aligned_cols=26 Identities=46% Similarity=0.548 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhCC
Q 036742 381 HILIKGQSGSGKRALAMALLHEIYGD 406 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~g~ 406 (629)
..+|+||.|+|||+++.||.-.+++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~g~ 50 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLYWP 50 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999877664
No 480
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.30 E-value=0.16 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.|+|.|++|+|||+|+.++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 481
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.30 E-value=0.12 Score=52.48 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=28.4
Q ss_pred eEEEEEccch-hhHHHHHHHHHHHhccCC--CcEEEEEecCCcc
Q 036742 462 AMIVIYEVDK-AAEHIQYLIKWIMDGYTD--SCKLILCCEDDVD 502 (629)
Q Consensus 462 kVIIIDEID~-Ls~~~q~aLlrilEe~~~--~~~~ILitN~~~~ 502 (629)
.|||+||.-. |.......+..++..... ...+|+++++...
T Consensus 176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~ 219 (271)
T 2ixe_A 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219 (271)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 4999999765 456666666776665532 5678888887543
No 482
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.30 E-value=0.16 Score=45.61 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.|+|.|++|+|||+|+..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 483
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.28 E-value=0.19 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.456 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 036742 379 CPHILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 379 ~p~ILL~GPPGtGKTtLAraLAke 402 (629)
...|+|.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999998753
No 484
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.27 E-value=0.12 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46799999999999999999864
No 485
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.24 E-value=0.12 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999864
No 486
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.23 E-value=0.15 Score=57.99 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||+|++|++.|.
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999974
No 487
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.20 E-value=0.12 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999999865
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.19 E-value=0.12 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999999864
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.13 E-value=0.14 Score=55.64 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q 036742 381 HILIKGQSGSGKRALAMALLHEIY 404 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL~ 404 (629)
.|+|.|++|+||||++..+|..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998863
No 490
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.08 E-value=0.13 Score=55.07 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=28.6
Q ss_pred CeEEEEEccch-hhHHHHHHHHHHHhccCCCcEEEEEecCCccc
Q 036742 461 NAMIVIYEVDK-AAEHIQYLIKWIMDGYTDSCKLILCCEDDVDI 503 (629)
Q Consensus 461 ~kVIIIDEID~-Ls~~~q~aLlrilEe~~~~~~~ILitN~~~~I 503 (629)
++|||+||.-. |.......++..+........+|+++++.+.+
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM 217 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH
Confidence 34999999643 45555566666665544567788888876443
No 491
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.07 E-value=0.51 Score=52.14 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAk 401 (629)
.+|+.+|+|+|||..+...+-
T Consensus 42 d~lv~apTGsGKTl~~~lp~l 62 (523)
T 1oyw_A 42 DCLVVMPTGGGKSLCYQIPAL 62 (523)
T ss_dssp CEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHH
Confidence 699999999999987665443
No 492
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.06 E-value=0.16 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.++|.|++|+|||+|++.++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999863
No 493
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.06 E-value=0.098 Score=55.33 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|||||||+++||..+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999999864
No 494
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.04 E-value=0.18 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.|+|.|++|+|||+|+..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 495
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.96 E-value=0.13 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999764
No 496
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.96 E-value=0.13 Score=51.90 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.+.|.||.|+|||||+++|+..+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999999764
No 497
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=89.95 E-value=0.43 Score=51.77 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCcHHHH-HHHHHHHH
Q 036742 380 PHILIKGQSGSGKRAL-AMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtL-AraLAkeL 403 (629)
..+|+.||+|+|||+. +..+...+
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999997 44444443
No 498
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.94 E-value=0.95 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 036742 381 HILIKGQSGSGKRALAMALLHE 402 (629)
Q Consensus 381 ~ILL~GPPGtGKTtLAraLAke 402 (629)
.+.|.|.||+|||||+.++...
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988754
No 499
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.92 E-value=3.4 Score=44.45 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q 036742 380 PHILIKGQSGSGKRALAMALLHEI 403 (629)
Q Consensus 380 p~ILL~GPPGtGKTtLAraLAkeL 403 (629)
.++|+.+|+|+|||..+...+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 369999999999999877776554
No 500
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.85 E-value=0.29 Score=45.24 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q 036742 377 GNCPHILIKGQSGSGKRALAMALLH 401 (629)
Q Consensus 377 g~~p~ILL~GPPGtGKTtLAraLAk 401 (629)
.....|+|.|++|+|||+|+..+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3445799999999999999999884
Done!