BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036743
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors A29
          Length = 270

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 18  SLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77
           SL +L L N +LK  P  A +KL  L+ LKL  +    +++    F    +LK+L+ +  
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQLQEN 215

Query: 78  FW 79
            W
Sbjct: 216 PW 217


>pdb|1RZ4|A Chain A, Crystal Structure Of Human Eif3k
          Length = 226

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 18/81 (22%)

Query: 2   DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVL--------------K 47
           D+E +  VL  Y+F P+  Q ++T   L    L AL  LPH                   
Sbjct: 43  DLEANLAVLKLYQFNPAFFQTTVTAQIL----LKALTNLPHTDFTLCKCXIDQAHQEERP 98

Query: 48  LKQSLYSGRKLACAGFGGFLQ 68
           ++Q LY G  L    F  F Q
Sbjct: 99  IRQILYLGDLLETCHFQAFWQ 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,569,177
Number of Sequences: 62578
Number of extensions: 81626
Number of successful extensions: 179
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)