Query 036743
Match_columns 91
No_of_seqs 132 out of 1028
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:03:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13855 LRR_8: Leucine rich r 98.0 8.9E-06 1.9E-10 44.0 3.7 59 17-77 1-59 (61)
2 PLN03150 hypothetical protein; 98.0 6.1E-06 1.3E-10 63.0 3.5 73 2-76 427-499 (623)
3 PF13855 LRR_8: Leucine rich r 97.9 6.5E-06 1.4E-10 44.6 2.0 49 2-51 10-59 (61)
4 PLN00113 leucine-rich repeat r 97.8 1.5E-05 3.3E-10 62.7 2.8 52 2-53 484-535 (968)
5 PLN03150 hypothetical protein; 97.8 2.7E-05 6E-10 59.5 3.6 54 2-55 451-504 (623)
6 PLN00113 leucine-rich repeat r 97.7 3.8E-05 8.2E-10 60.5 3.1 75 2-78 508-582 (968)
7 PF12799 LRR_4: Leucine Rich r 97.6 0.0001 2.2E-09 37.8 3.4 35 17-53 1-36 (44)
8 KOG4658 Apoptotic ATPase [Sign 97.5 0.00017 3.6E-09 57.4 4.2 83 7-91 760-846 (889)
9 KOG0617 Ras suppressor protein 97.1 6.6E-05 1.4E-09 50.2 -0.9 69 3-76 43-111 (264)
10 PLN03210 Resistant to P. syrin 97.1 0.00059 1.3E-08 55.4 4.0 79 4-83 789-885 (1153)
11 PF14580 LRR_9: Leucine-rich r 97.1 4.5E-05 9.7E-10 50.1 -2.1 72 2-77 73-150 (175)
12 PF14580 LRR_9: Leucine-rich r 96.9 0.00045 9.8E-09 45.3 1.4 34 16-51 41-74 (175)
13 PF12799 LRR_4: Leucine Rich r 96.6 0.0017 3.7E-08 33.2 2.1 34 2-38 10-43 (44)
14 PLN03210 Resistant to P. syrin 96.6 0.004 8.7E-08 50.7 5.0 40 9-49 626-665 (1153)
15 KOG1644 U2-associated snRNP A' 96.3 0.0058 1.3E-07 41.5 3.5 72 3-77 74-150 (233)
16 KOG4658 Apoptotic ATPase [Sign 95.4 0.0035 7.7E-08 50.1 -0.3 66 7-76 585-651 (889)
17 KOG3864 Uncharacterized conser 95.4 0.00047 1E-08 46.5 -4.5 64 16-81 124-190 (221)
18 KOG3665 ZYG-1-like serine/thre 95.4 0.0037 7.9E-08 48.8 -0.4 41 10-50 140-182 (699)
19 KOG0472 Leucine-rich repeat pr 95.3 0.0089 1.9E-07 44.5 1.4 52 2-55 490-542 (565)
20 KOG2120 SCF ubiquitin ligase, 95.2 0.0082 1.8E-07 43.2 0.9 61 15-77 311-373 (419)
21 KOG0617 Ras suppressor protein 95.0 0.0017 3.8E-08 43.5 -2.6 47 3-51 66-112 (264)
22 KOG3665 ZYG-1-like serine/thre 95.0 0.0055 1.2E-07 47.8 -0.4 60 17-77 122-183 (699)
23 KOG4194 Membrane glycoprotein 95.0 0.0083 1.8E-07 46.5 0.6 36 14-49 194-229 (873)
24 KOG4194 Membrane glycoprotein 94.6 0.023 5.1E-07 44.2 2.0 48 3-51 112-159 (873)
25 KOG1259 Nischarin, modulator o 94.6 0.0027 5.8E-08 45.9 -2.8 67 9-78 344-410 (490)
26 KOG3207 Beta-tubulin folding c 94.3 0.018 3.8E-07 43.1 0.9 65 16-83 245-316 (505)
27 KOG2739 Leucine-rich acidic nu 94.0 0.032 7E-07 38.8 1.7 62 16-78 64-127 (260)
28 cd00116 LRR_RI Leucine-rich re 94.0 0.0042 9.1E-08 42.7 -2.7 12 19-30 110-121 (319)
29 KOG0531 Protein phosphatase 1, 93.5 0.033 7.2E-07 40.5 1.1 37 13-51 114-150 (414)
30 cd00116 LRR_RI Leucine-rich re 93.2 0.0074 1.6E-07 41.5 -2.7 43 10-52 74-119 (319)
31 KOG0618 Serine/threonine phosp 92.9 0.045 9.8E-07 44.2 1.1 48 2-51 439-486 (1081)
32 KOG1644 U2-associated snRNP A' 92.6 0.18 3.9E-06 34.4 3.4 61 14-77 61-123 (233)
33 KOG2739 Leucine-rich acidic nu 92.6 0.073 1.6E-06 37.1 1.6 71 5-77 79-153 (260)
34 KOG0472 Leucine-rich repeat pr 92.4 0.035 7.6E-07 41.5 -0.1 47 2-51 261-307 (565)
35 KOG3207 Beta-tubulin folding c 92.3 0.035 7.6E-07 41.5 -0.2 64 13-77 142-207 (505)
36 PF13504 LRR_7: Leucine rich r 91.9 0.12 2.7E-06 21.0 1.3 14 17-30 1-14 (17)
37 KOG0444 Cytoskeletal regulator 91.5 0.0092 2E-07 46.9 -4.2 47 2-49 277-324 (1255)
38 KOG0618 Serine/threonine phosp 91.2 0.036 7.9E-07 44.7 -1.2 43 34-78 445-487 (1081)
39 KOG3864 Uncharacterized conser 91.1 0.054 1.2E-06 36.8 -0.3 62 18-80 102-164 (221)
40 KOG4579 Leucine-rich repeat (L 90.8 0.033 7.1E-07 36.1 -1.5 53 1-55 61-114 (177)
41 PF13516 LRR_6: Leucine Rich r 90.7 0.014 3.1E-07 25.6 -2.4 21 17-37 2-22 (24)
42 PF00560 LRR_1: Leucine Rich R 90.1 0.13 2.7E-06 22.2 0.5 13 18-30 1-13 (22)
43 PRK15387 E3 ubiquitin-protein 88.7 1 2.2E-05 36.1 4.9 40 3-49 211-250 (788)
44 COG4886 Leucine-rich repeat (L 88.4 0.18 4E-06 36.0 0.6 47 3-51 126-173 (394)
45 KOG1259 Nischarin, modulator o 88.1 0.075 1.6E-06 38.6 -1.5 39 15-53 372-411 (490)
46 PRK15370 E3 ubiquitin-protein 87.6 0.73 1.6E-05 36.6 3.5 53 17-77 325-377 (754)
47 COG4886 Leucine-rich repeat (L 87.1 0.2 4.4E-06 35.8 0.2 48 2-52 149-197 (394)
48 KOG1947 Leucine rich repeat pr 85.5 0.17 3.7E-06 36.5 -0.9 63 16-79 242-307 (482)
49 KOG0444 Cytoskeletal regulator 85.4 0.057 1.2E-06 42.7 -3.5 42 8-49 164-205 (1255)
50 KOG2120 SCF ubiquitin ligase, 84.1 0.082 1.8E-06 38.3 -2.9 63 17-80 286-351 (419)
51 smart00370 LRR Leucine-rich re 83.4 0.91 2E-05 19.9 1.4 17 16-32 1-17 (26)
52 smart00369 LRR_TYP Leucine-ric 83.4 0.91 2E-05 19.9 1.4 17 16-32 1-17 (26)
53 PRK15370 E3 ubiquitin-protein 82.0 2.5 5.5E-05 33.7 4.2 38 9-51 193-230 (754)
54 KOG1909 Ran GTPase-activating 81.7 0.48 1E-05 34.6 0.1 36 17-52 185-224 (382)
55 KOG4237 Extracellular matrix p 81.6 0.77 1.7E-05 34.4 1.2 60 14-76 271-331 (498)
56 KOG0531 Protein phosphatase 1, 80.0 0.92 2E-05 33.1 1.1 38 13-52 91-129 (414)
57 PRK15387 E3 ubiquitin-protein 77.9 0.74 1.6E-05 36.8 0.1 48 2-55 411-459 (788)
58 KOG2123 Uncharacterized conser 77.7 0.096 2.1E-06 37.6 -4.3 32 16-49 18-49 (388)
59 KOG2982 Uncharacterized conser 77.5 1.5 3.2E-05 32.0 1.5 60 15-76 95-155 (418)
60 KOG4237 Extracellular matrix p 76.9 0.48 1E-05 35.5 -1.1 48 2-50 76-124 (498)
61 smart00368 LRR_RI Leucine rich 74.2 0.55 1.2E-05 21.4 -0.9 21 17-37 2-22 (28)
62 smart00365 LRR_SD22 Leucine-ri 73.0 2.4 5.2E-05 19.2 1.1 15 16-30 1-15 (26)
63 KOG3763 mRNA export factor TAP 70.4 1.6 3.5E-05 33.7 0.3 37 15-51 216-254 (585)
64 smart00367 LRR_CC Leucine-rich 68.5 4.6 9.9E-05 17.7 1.5 15 66-80 1-15 (26)
65 PRK15386 type III secretion pr 68.4 7.7 0.00017 29.1 3.5 14 16-29 51-64 (426)
66 KOG2123 Uncharacterized conser 68.0 1.6 3.4E-05 31.6 -0.2 58 15-76 39-97 (388)
67 KOG1859 Leucine-rich repeat pr 65.8 1.1 2.4E-05 36.2 -1.4 36 15-52 185-220 (1096)
68 smart00446 LRRcap occurring C- 48.9 5.7 0.00012 18.0 -0.0 13 36-48 8-20 (26)
69 KOG2982 Uncharacterized conser 46.1 10 0.00022 27.8 0.9 38 15-52 119-157 (418)
70 KOG0532 Leucine-rich repeat (L 36.5 21 0.00044 28.3 1.3 43 9-53 204-246 (722)
71 KOG4341 F-box protein containi 35.3 0.65 1.4E-05 34.8 -6.6 65 16-81 163-230 (483)
72 smart00364 LRR_BAC Leucine-ric 34.2 27 0.00059 15.8 1.0 14 17-30 2-15 (26)
73 KOG3704 Heparan sulfate D-gluc 33.3 13 0.00029 26.7 -0.1 58 11-71 252-309 (360)
74 COG5439 Uncharacterized conser 32.8 13 0.00028 22.3 -0.2 18 6-23 87-104 (112)
75 KOG0532 Leucine-rich repeat (L 32.8 3.5 7.6E-05 32.4 -3.3 48 3-52 153-200 (722)
76 COG5238 RNA1 Ran GTPase-activa 26.3 24 0.00052 25.7 0.2 35 16-50 91-129 (388)
77 KOG3337 Protein similar to pre 25.4 37 0.00081 22.7 0.9 19 6-24 59-77 (201)
78 TIGR00864 PCC polycystin catio 20.5 80 0.0017 29.4 2.2 37 1-38 3-41 (2740)
No 1
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=8.9e-06 Score=44.04 Aligned_cols=59 Identities=25% Similarity=0.420 Sum_probs=39.3
Q ss_pred CCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 17 PSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
++|++|+++.|++..-+-..+..+++|++|+|..+... .+.-+...++++|++|.+.+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT--SIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES--EEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC--ccCHHHHcCCCCCCEEeCcCC
Confidence 47788888888877655567888888888888644442 222111346777788777653
No 2
>PLN03150 hypothetical protein; Provisional
Probab=97.98 E-value=6.1e-06 Score=63.00 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=49.8
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|.+.+.+|..+..+++|+.|+|+.|.+.....+.++++++|+.|+|..+...+.. .-. .+.+++|+.|++.+
T Consensus 427 ~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~-l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PES-LGQLTSLRILNLNG 499 (623)
T ss_pred CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chH-HhcCCCCCEEECcC
Confidence 45677778888888888888888888776543446888888888888766655532 111 23577777777754
No 3
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=6.5e-06 Score=44.58 Aligned_cols=49 Identities=31% Similarity=0.514 Sum_probs=41.0
Q ss_pred ceecccccC-cccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 2 DVELSQMVL-SKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 2 ~~~~~~~lP-~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+|++.. +| .++..+++|++|+++.|.+..-+...+..+|+|++|.+..+
T Consensus 10 ~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 10 NNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp SSTESE-ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCc-cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 567776 55 68889999999999999997656667999999999999654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.79 E-value=1.5e-05 Score=62.68 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=30.4
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
+|++++.+|.++..+++|++|+|+.|.+.....+.++.+++|++|+|..+..
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 3555555666666666666666666665544444566666666666654443
No 5
>PLN03150 hypothetical protein; Provisional
Probab=97.75 E-value=2.7e-05 Score=59.48 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=47.6
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSG 55 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~ 55 (91)
+|+|.+.+|..++.+++|+.|+|+.|.+.....+.+++|++|+.|+|..+...|
T Consensus 451 ~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 451 GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 578999999999999999999999999887666679999999999998766554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.65 E-value=3.8e-05 Score=60.49 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=58.4
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMF 78 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~ 78 (91)
+|++.+.+|..+..+++|++|+|++|.+.......++.|++|+.|+|..+...+. +.-. ...+++|+.|.+.+..
T Consensus 508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~-l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE-IPKN-LGNVESLVQVNISHNH 582 (968)
T ss_pred CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc-CChh-HhcCcccCEEeccCCc
Confidence 5788888999999999999999999998776666799999999999977666552 1111 2357788888887653
No 7
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=0.0001 Score=37.84 Aligned_cols=35 Identities=34% Similarity=0.618 Sum_probs=27.9
Q ss_pred CCccEEEEecccCCCCCccc-ccCCCCCceeEEecccc
Q 036743 17 PSLTQLSLTNAELKYDPLPA-LEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l~~-L~~Lp~L~~L~L~~~~~ 53 (91)
++|++|+++++++. +++. +++||+|+.|.++.+..
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCC
Confidence 47999999999876 5777 99999999999976543
No 8
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.45 E-value=0.00017 Score=57.40 Aligned_cols=83 Identities=33% Similarity=0.462 Sum_probs=71.7
Q ss_pred cccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCCCcceEEEc
Q 036743 7 QMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMFWVEEWTMR 86 (91)
Q Consensus 7 ~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~~l~~~~~~ 86 (91)
.+.|.|....+||++|++..|...+++++.+.++..+..+.+..+.+.+.++..+ .++||++..+.+.... +++|.++
T Consensus 760 ~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~-l~~l~~i~~~~l~~~~-l~~~~ve 837 (889)
T KOG4658|consen 760 LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS-LGGLPQLYWLPLSFLK-LEELIVE 837 (889)
T ss_pred ccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec-CCCCceeEecccCccc-hhheehh
Confidence 4678888899999999999999999999999999999987776677887766666 7889999999998765 8999998
Q ss_pred c----CCCC
Q 036743 87 A----GAMP 91 (91)
Q Consensus 87 ~----gamP 91 (91)
+ +.||
T Consensus 838 ~~p~l~~~P 846 (889)
T KOG4658|consen 838 ECPKLGKLP 846 (889)
T ss_pred cCcccccCc
Confidence 8 8887
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.14 E-value=6.6e-05 Score=50.22 Aligned_cols=69 Identities=26% Similarity=0.360 Sum_probs=50.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
|.++. +|.-|..|.||+.|.++.+++++- ...++.||.|+.|.+..+...- +.- |.++||.|++|++..
T Consensus 43 NKl~~-vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~--lpr-gfgs~p~levldlty 111 (264)
T KOG0617|consen 43 NKLTV-VPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNI--LPR-GFGSFPALEVLDLTY 111 (264)
T ss_pred Cceee-cCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhhc--Ccc-ccCCCchhhhhhccc
Confidence 45554 788899999999999999987532 2368999999999986433221 222 367899999999864
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.10 E-value=0.00059 Score=55.42 Aligned_cols=79 Identities=18% Similarity=0.089 Sum_probs=49.6
Q ss_pred ecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccccc---------CcEEEee---------CCCC
Q 036743 4 ELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYS---------GRKLACA---------GFGG 65 (91)
Q Consensus 4 ~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~---------~~~l~~~---------~~~~ 65 (91)
.....+|.+++.+++|++|+|++|. .-..+|.-..+++|+.|.|..+... -+.+... ....
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~-~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCI-NLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCC-CcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc
Confidence 3444589999999999999999885 2345665557888888888542110 0111111 0234
Q ss_pred CccCcEEeccCCCCcceE
Q 036743 66 FLQLKILRPKSMFWVEEW 83 (91)
Q Consensus 66 Fp~Lk~L~l~~~~~l~~~ 83 (91)
+++|++|.+.++.++..+
T Consensus 868 l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCCCEEECCCCCCcCcc
Confidence 777888877776666554
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.08 E-value=4.5e-05 Score=50.07 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=30.0
Q ss_pred ceecccccCcccC-CCCCccEEEEecccCCC-CCcccccCCCCCceeEEecccccCcE----EEeeCCCCCccCcEEecc
Q 036743 2 DVELSQMVLSKYK-FPPSLTQLSLTNAELKY-DPLPALEKLPHLRVLKLKQSLYSGRK----LACAGFGGFLQLKILRPK 75 (91)
Q Consensus 2 ~~~~~~~lP~wi~-~L~~L~~L~L~~~~l~~-~~l~~L~~Lp~L~~L~L~~~~~~~~~----l~~~~~~~Fp~Lk~L~l~ 75 (91)
+|+++. ++..+. .+++|++|+|+.|++.. .++..|+.+|+|+.|+|..++..... .++ ...|+|+.|+-.
T Consensus 73 ~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi---~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 73 NNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVI---YKLPSLKVLDGQ 148 (175)
T ss_dssp SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHH---HH-TT-SEETTE
T ss_pred CCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHH---HHcChhheeCCE
Confidence 355553 544442 46777777777777754 55677777777777777655543211 111 237777777664
Q ss_pred CC
Q 036743 76 SM 77 (91)
Q Consensus 76 ~~ 77 (91)
..
T Consensus 149 ~V 150 (175)
T PF14580_consen 149 DV 150 (175)
T ss_dssp ET
T ss_pred Ec
Confidence 43
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.91 E-value=0.00045 Score=45.34 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=10.2
Q ss_pred CCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 16 PPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+.+|+.|+|+.|.+. .++.+..|+.|+.|.+..+
T Consensus 41 l~~L~~L~Ls~N~I~--~l~~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT--KLEGLPGLPRLKTLDLSNN 74 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS
T ss_pred hcCCCEEECCCCCCc--cccCccChhhhhhcccCCC
Confidence 556666666666553 3445555666666666433
No 13
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.63 E-value=0.0017 Score=33.21 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=27.1
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCccccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALE 38 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~ 38 (91)
+|++.. +|..+..+++|+.|+++.|.+. +++.+.
T Consensus 10 ~N~i~~-l~~~l~~l~~L~~L~l~~N~i~--~i~~l~ 43 (44)
T PF12799_consen 10 NNQITD-LPPELSNLPNLETLNLSNNPIS--DISPLS 43 (44)
T ss_dssp SSS-SS-HGGHGTTCTTSSEEEETSSCCS--BEGGGT
T ss_pred CCCCcc-cCchHhCCCCCCEEEecCCCCC--CCcCCC
Confidence 678885 9998999999999999999875 455554
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.60 E-value=0.004 Score=50.72 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred cCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 9 VLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 9 lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
+|..+..+++|+.|+|+.+. .-..+|.++.+++|+.|.|.
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~-~l~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSK-NLKEIPDLSMATNLETLKLS 665 (1153)
T ss_pred cccccccCCCCCEEECCCCC-CcCcCCccccCCcccEEEec
Confidence 44444456666666666543 12344556666666666664
No 15
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.27 E-value=0.0058 Score=41.51 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=48.5
Q ss_pred eecccccCcccC-CCCCccEEEEecccCCC-CCcccccCCCCCceeEEeccccc---CcEEEeeCCCCCccCcEEeccCC
Q 036743 3 VELSQMVLSKYK-FPPSLTQLSLTNAELKY-DPLPALEKLPHLRVLKLKQSLYS---GRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 3 ~~~~~~lP~wi~-~L~~L~~L~L~~~~l~~-~~l~~L~~Lp~L~~L~L~~~~~~---~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
|++.. |-+-+. .+++|..|.|.+|.+.. .++..|..+|.|++|++-.+... +-+.+. ...+|+|++|++...
T Consensus 74 NrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv--l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 74 NRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV--LYKLPSLRTLDFQKV 150 (233)
T ss_pred Cccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE--EEecCcceEeehhhh
Confidence 44443 333333 57889999998888754 57888999999999998655432 223332 235899999988653
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.43 E-value=0.0035 Score=50.07 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=44.5
Q ss_pred cccCcccCCCCCccEEEEecccCCCCCcc-cccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 7 QMVLSKYKFPPSLTQLSLTNAELKYDPLP-ALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 7 ~~lP~wi~~L~~L~~L~L~~~~l~~~~l~-~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+++|+.|+.|-+|++|+|+++.+. .+| .+++|..|.+|++.... ....+. +.....++|++|.+..
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~-~l~~~~-~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTG-RLESIP-GILLELQSLRVLRLPR 651 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheecccccc-cccccc-chhhhcccccEEEeec
Confidence 568999999999999999998875 454 48888888888884322 111111 1123477888887743
No 17
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.00047 Score=46.55 Aligned_cols=64 Identities=27% Similarity=0.259 Sum_probs=32.2
Q ss_pred CCCccEEEEeccc-CCCCCcccccC-CCCCceeEEecccccCc-EEEeeCCCCCccCcEEeccCCCCcc
Q 036743 16 PPSLTQLSLTNAE-LKYDPLPALEK-LPHLRVLKLKQSLYSGR-KLACAGFGGFLQLKILRPKSMFWVE 81 (91)
Q Consensus 16 L~~L~~L~L~~~~-l~~~~l~~L~~-Lp~L~~L~L~~~~~~~~-~l~~~~~~~Fp~Lk~L~l~~~~~l~ 81 (91)
++.+++|.+.+|. +....+.-|++ .|+|+.|+|..+..+.+ .+.+ -..|++|+.|+|.+++.+.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~--L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC--LLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH--HHHhhhhHHHHhcCchhhh
Confidence 4555555555553 22233555555 56666666653332221 1111 2347777777777665443
No 18
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.35 E-value=0.0037 Score=48.81 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=29.1
Q ss_pred CcccC-CCCCccEEEEecccCCCCCccccc-CCCCCceeEEec
Q 036743 10 LSKYK-FPPSLTQLSLTNAELKYDPLPALE-KLPHLRVLKLKQ 50 (91)
Q Consensus 10 P~wi~-~L~~L~~L~L~~~~l~~~~l~~L~-~Lp~L~~L~L~~ 50 (91)
|.-++ .||+|++|.+.+-.+..+++..++ .+|||.+|++++
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC
Confidence 33344 378888888888777777765555 488888888854
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.28 E-value=0.0089 Score=44.53 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=41.5
Q ss_pred ceecccccCcc-cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccC
Q 036743 2 DVELSQMVLSK-YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSG 55 (91)
Q Consensus 2 ~~~~~~~lP~w-i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~ 55 (91)
+|+++. +|.. +..+++|+.|+|..+.+.. -.|.||++.+|+.|.|.++.+..
T Consensus 490 ~nqi~~-vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 490 NNQIGS-VDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred cccccc-cChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccCC
Confidence 467775 6555 8889999999999998643 45689999999999998777654
No 20
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.0082 Score=43.23 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCCCccEEEEecccCC-CCCcccccCCCCCceeEEeccccc-CcEEEeeCCCCCccCcEEeccCC
Q 036743 15 FPPSLTQLSLTNAELK-YDPLPALEKLPHLRVLKLKQSLYS-GRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 15 ~L~~L~~L~L~~~~l~-~~~l~~L~~Lp~L~~L~L~~~~~~-~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
..++|++|+|++|.+- .+.+..+-+++.|++|.+. ++|. ..+..+. .+.-|+|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls-RCY~i~p~~~~~-l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS-RCYDIIPETLLE-LNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehh-hhcCCChHHeee-eccCcceEEEEeccc
Confidence 4689999999998654 4446778899999999995 5554 3333333 467899999988766
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.05 E-value=0.0017 Score=43.52 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=38.2
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
||+. .+|..|++++.|++|.+..+++.-- ..-+|.+|.|..|+|..+
T Consensus 66 nqie-~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levldltyn 112 (264)
T KOG0617|consen 66 NQIE-ELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVLDLTYN 112 (264)
T ss_pred chhh-hcChhhhhchhhhheecchhhhhcC-ccccCCCchhhhhhcccc
Confidence 5565 4999999999999999999987532 235999999999999644
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.01 E-value=0.0055 Score=47.84 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=43.1
Q ss_pred CCccEEEEecccC-CCCCcccccC-CCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 17 PSLTQLSLTNAEL-KYDPLPALEK-LPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 17 ~~L~~L~L~~~~l-~~~~l~~L~~-Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
.+|++|++++... .++-...+|. ||+|+.|.+.+..+..+++..- ...||+|..|++++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~l-c~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQL-CASFPNLRSLDISGT 183 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHH-hhccCccceeecCCC
Confidence 6899999988643 3444556775 9999999997666554442211 457999999999875
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.00 E-value=0.0083 Score=46.54 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=22.7
Q ss_pred CCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 14 KFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 14 ~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
.+|.+|..|.|+.|++..-+..+..+||.|+.|+|.
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 345666666666666666555566666666666664
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.59 E-value=0.023 Score=44.17 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=32.2
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|++. +||.......+|++|+|..|.+..-.=+.|.-+|.|+.|+|+.+
T Consensus 112 N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 112 NELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred chhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 4444 37777666777777777777766555566777777777777543
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.58 E-value=0.0027 Score=45.86 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=40.4
Q ss_pred cCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCC
Q 036743 9 VLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMF 78 (91)
Q Consensus 9 lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~ 78 (91)
+-.|...|-|++.|.|..|.+ +++.-|++|=+|.+|+++.+....-+-+-+ .+..|||+.+.+.+-+
T Consensus 344 ~~Gwh~KLGNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 344 CVGWHLKLGNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhcCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence 334444455555555555443 456667778888888886555433221222 5679999999887755
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.018 Score=43.05 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=45.8
Q ss_pred CCCccEEEEecccCC-CCCcccccCCCCCceeEEecccc------cCcEEEeeCCCCCccCcEEeccCCCCcceE
Q 036743 16 PPSLTQLSLTNAELK-YDPLPALEKLPHLRVLKLKQSLY------SGRKLACAGFGGFLQLKILRPKSMFWVEEW 83 (91)
Q Consensus 16 L~~L~~L~L~~~~l~-~~~l~~L~~Lp~L~~L~L~~~~~------~~~~l~~~~~~~Fp~Lk~L~l~~~~~l~~~ 83 (91)
++.|+.|+|+++.+- -++....|.||.|..|.+..+.. .++.... .+.||+|++|.+..- +..+|
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k--t~~f~kL~~L~i~~N-~I~~w 316 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK--THTFPKLEYLNISEN-NIRDW 316 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhh--hcccccceeeecccC-ccccc
Confidence 678999999998764 46678899999999999954322 1222211 367999999998654 24444
No 27
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.05 E-value=0.032 Score=38.83 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCccEEEEecccCCC-CCccccc-CCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCC
Q 036743 16 PPSLTQLSLTNAELKY-DPLPALE-KLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMF 78 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~-~~l~~L~-~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~ 78 (91)
|++|++|.++.|+..- ..|++|. +.|+|++|.+..+....-+ .+.....+++|+.|.+.++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-tl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-TLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-ccchhhhhcchhhhhcccCC
Confidence 6677777777773221 2355443 3577777777543322110 01112345555565555543
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.03 E-value=0.0042 Score=42.68 Aligned_cols=12 Identities=42% Similarity=0.553 Sum_probs=5.9
Q ss_pred ccEEEEecccCC
Q 036743 19 LTQLSLTNAELK 30 (91)
Q Consensus 19 L~~L~L~~~~l~ 30 (91)
|++|+++.|++.
T Consensus 110 L~~L~ls~~~~~ 121 (319)
T cd00116 110 LQELKLNNNGLG 121 (319)
T ss_pred ccEEEeeCCccc
Confidence 555555554443
No 29
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.54 E-value=0.033 Score=40.55 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=21.9
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+..+++|++|+|+++.+ ..+..+..|+.|+.|.+..+
T Consensus 114 l~~~~~L~~L~ls~N~I--~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKI--TKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred hhhhhcchheecccccc--ccccchhhccchhhheeccC
Confidence 44566666666666655 34555666666666666443
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.18 E-value=0.0074 Score=41.46 Aligned_cols=43 Identities=30% Similarity=0.280 Sum_probs=27.3
Q ss_pred CcccCCCCCccEEEEecccCCCCCcccccCCCC---CceeEEeccc
Q 036743 10 LSKYKFPPSLTQLSLTNAELKYDPLPALEKLPH---LRVLKLKQSL 52 (91)
Q Consensus 10 P~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~---L~~L~L~~~~ 52 (91)
+..+..+++|++|+++++.+..+..+.++.++. |+.|++..+.
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 334445778888888887766544445555554 8888886443
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.93 E-value=0.045 Score=44.21 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=30.5
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+|++.. +| -+..++.|+.+|++-|++....++....=|+|++|++..+
T Consensus 439 sN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 439 SNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred CCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 466665 67 5666777777777777766555544444467777777543
No 32
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.63 E-value=0.18 Score=34.43 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=39.2
Q ss_pred CCCCCccEEEEecccCCCCCccccc-CCCCCceeEEecccccC-cEEEeeCCCCCccCcEEeccCC
Q 036743 14 KFPPSLTQLSLTNAELKYDPLPALE-KLPHLRVLKLKQSLYSG-RKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 14 ~~L~~L~~L~L~~~~l~~~~l~~L~-~Lp~L~~L~L~~~~~~~-~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
..+++|..|.|..|+++.-+- .|+ -+|+|..|.|.++.... .++. .-.++|+|++|.+.+-
T Consensus 61 p~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKLEYLTLLGN 123 (233)
T ss_pred CCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcc--hhccCCccceeeecCC
Confidence 347888888888888764333 444 48888888886554332 1221 1346888888877543
No 33
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.59 E-value=0.073 Score=37.11 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=45.6
Q ss_pred cccccCcccCCCCCccEEEEecccCC-CCCcccccCCCCCceeEEecccccCcEEE-ee--CCCCCccCcEEeccCC
Q 036743 5 LSQMVLSKYKFPPSLTQLSLTNAELK-YDPLPALEKLPHLRVLKLKQSLYSGRKLA-CA--GFGGFLQLKILRPKSM 77 (91)
Q Consensus 5 ~~~~lP~wi~~L~~L~~L~L~~~~l~-~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~-~~--~~~~Fp~Lk~L~l~~~ 77 (91)
.++.++--.-..++|++|+|+.|++. -+.++.+.+|++|..|.+..+.... +. -. -..-.|+|++|.=.+.
T Consensus 79 ~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~--l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 79 VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN--LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc--cccHHHHHHHHhhhhcccccccc
Confidence 33434444445699999999999987 4568889999999999996544332 11 00 0123667776655443
No 34
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.43 E-value=0.035 Score=41.49 Aligned_cols=47 Identities=32% Similarity=0.451 Sum_probs=28.9
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
||.+.. +|+-+..|++|.+|+++.+.+..-+ ..||+| .|++|.+.++
T Consensus 261 dNklke-~Pde~clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 261 DNKLKE-VPDEICLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGN 307 (565)
T ss_pred cccccc-CchHHHHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCC
Confidence 555554 6666666777777777776654322 257777 7777766543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.035 Score=41.51 Aligned_cols=64 Identities=27% Similarity=0.224 Sum_probs=37.5
Q ss_pred cCCCCCccEEEEecccCCC-CC-cccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 13 YKFPPSLTQLSLTNAELKY-DP-LPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~-~~-l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
...+++++.|+|+.+-+.. ++ .....+||+|+.|.|+.+......-... ...++.||.|.+..|
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~~lK~L~l~~C 207 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLSHLKQLVLNSC 207 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhhhhheEEeccC
Confidence 3457888888888886543 33 3556778888888886554321110000 224666666666544
No 36
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.89 E-value=0.12 Score=20.96 Aligned_cols=14 Identities=43% Similarity=0.721 Sum_probs=8.3
Q ss_pred CCccEEEEecccCC
Q 036743 17 PSLTQLSLTNAELK 30 (91)
Q Consensus 17 ~~L~~L~L~~~~l~ 30 (91)
++|+.|+|++|++.
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 46788888888764
No 37
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=91.48 E-value=0.0092 Score=46.93 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=37.5
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCccc-ccCCCCCceeEEe
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPA-LEKLPHLRVLKLK 49 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~-L~~Lp~L~~L~L~ 49 (91)
.||++. +|.-+..|+.|++|...+|+++=+-+|+ +|+|-+|..+...
T Consensus 277 rNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 277 RNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred cchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 467775 8888888888888888888888777776 8888888876554
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=91.25 E-value=0.036 Score=44.72 Aligned_cols=43 Identities=33% Similarity=0.303 Sum_probs=25.8
Q ss_pred cccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCC
Q 036743 34 LPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMF 78 (91)
Q Consensus 34 l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~ 78 (91)
+|-+.++|.|++++++.+....-.+... -.-|+||+|++.+-.
T Consensus 445 fPe~~~l~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 445 FPELAQLPQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLDLSGNT 487 (1081)
T ss_pred chhhhhcCcceEEecccchhhhhhhhhh--CCCcccceeeccCCc
Confidence 4567778888888886554433222221 112788888887643
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=0.054 Score=36.78 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=45.3
Q ss_pred CccEEEEecccCCCCCcccccCCCCCceeEEecccccCcE-EEeeCCCCCccCcEEeccCCCCc
Q 036743 18 SLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRK-LACAGFGGFLQLKILRPKSMFWV 80 (91)
Q Consensus 18 ~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~-l~~~~~~~Fp~Lk~L~l~~~~~l 80 (91)
.++.++=+++.+..+-+.-|..++.++.|.+..+.+.+.. +..- .+.+|+|+.|+++.++.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCee
Confidence 3456666777777777888999999999999665555432 3222 347999999999988754
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.76 E-value=0.033 Score=36.11 Aligned_cols=53 Identities=28% Similarity=0.397 Sum_probs=38.8
Q ss_pred CceecccccCcccC-CCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccC
Q 036743 1 QDVELSQMVLSKYK-FPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSG 55 (91)
Q Consensus 1 ~~~~~~~~lP~wi~-~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~ 55 (91)
++|.|-. +|..+. .++.++.|.|..+++..-+-+ ++.+|.|+.|.++.+.+..
T Consensus 61 s~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 61 SDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred ccchhhh-CCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCcccc
Confidence 3566653 777765 467888899999887655554 9999999999997666543
No 41
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.67 E-value=0.014 Score=25.64 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=12.1
Q ss_pred CCccEEEEecccCCCCCcccc
Q 036743 17 PSLTQLSLTNAELKYDPLPAL 37 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l~~L 37 (91)
++|++|+|+.|.+..+.+..|
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 577788888777655544443
No 42
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.10 E-value=0.13 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=9.6
Q ss_pred CccEEEEecccCC
Q 036743 18 SLTQLSLTNAELK 30 (91)
Q Consensus 18 ~L~~L~L~~~~l~ 30 (91)
+|++|+|++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 5777888887765
No 43
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=88.67 E-value=1 Score=36.05 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=17.9
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
++|+ .+|..+. ++|++|++..|++.. +|.+ +|+|++|++.
T Consensus 211 ~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~--LP~l--p~~Lk~LdLs 250 (788)
T PRK15387 211 SGLT-TLPDCLP--AHITTLVIPDNNLTS--LPAL--PPELRTLEVS 250 (788)
T ss_pred CCCC-cCCcchh--cCCCEEEccCCcCCC--CCCC--CCCCcEEEec
Confidence 3444 3665443 245555555554432 2221 3455555554
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.39 E-value=0.18 Score=36.03 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=30.4
Q ss_pred eecccccCcccCCCC-CccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPP-SLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~-~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|+++. +|.++..+. +|+.|+++.+.+..-+ ..++.+|+|+.|.+..+
T Consensus 126 n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 126 NNITD-IPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ccccc-Cccccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence 44453 777777774 7777777777654221 36777777777777543
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=88.09 E-value=0.075 Score=38.61 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=32.7
Q ss_pred CCCCccEEEEecccCCC-CCcccccCCCCCceeEEecccc
Q 036743 15 FPPSLTQLSLTNAELKY-DPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 15 ~L~~L~~L~L~~~~l~~-~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
.|=+|..|++++|++.+ +....+|+||+|..+.|.++..
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 46788999999999876 5678899999999999976653
No 46
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.59 E-value=0.73 Score=36.63 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=24.5
Q ss_pred CCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 17 PSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
++|+.|++.+|.+.+-+- .+ .++|+.|+|..+.... +. ..-.++|++|++.+.
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~----LP-~~lp~~L~~LdLs~N 377 (754)
T PRK15370 325 PGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITV----LP-ETLPPTITTLDVSRN 377 (754)
T ss_pred ccceeccccCCccccCCh-hh--cCcccEEECCCCCCCc----CC-hhhcCCcCEEECCCC
Confidence 456666666665543211 11 2466666665443221 11 112345666666543
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=87.08 E-value=0.2 Score=35.82 Aligned_cols=48 Identities=29% Similarity=0.408 Sum_probs=36.3
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCccccc-CCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALE-KLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~-~Lp~L~~L~L~~~~ 52 (91)
+|++.. +|.++..+++|+.|++..|.+. +++... .+++|+.|.+..+.
T Consensus 149 ~N~i~~-l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 149 DNKIES-LPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred ccchhh-hhhhhhccccccccccCCchhh--hhhhhhhhhhhhhheeccCCc
Confidence 455554 7778889999999999999864 455555 88999988886543
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.50 E-value=0.17 Score=36.46 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=37.4
Q ss_pred CCCccEEEEeccc-CCCCCcccccC-CCCCceeEEeccc-ccCcEEEeeCCCCCccCcEEeccCCCC
Q 036743 16 PPSLTQLSLTNAE-LKYDPLPALEK-LPHLRVLKLKQSL-YSGRKLACAGFGGFLQLKILRPKSMFW 79 (91)
Q Consensus 16 L~~L~~L~L~~~~-l~~~~l~~L~~-Lp~L~~L~L~~~~-~~~~~l~~~~~~~Fp~Lk~L~l~~~~~ 79 (91)
.++|++|++..+. +....+..++. .|+|+.|.+.... ..++.+..- ...+|.|++|++..+..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCcc
Confidence 5777777777776 44445666665 7778877754332 222222221 34577788887775543
No 49
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=85.42 E-value=0.057 Score=42.69 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=24.2
Q ss_pred ccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 8 MVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 8 ~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
.+|+.|..|.+|+.|.|++|-+..-.+.-|-.|.+|..|.++
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 367777777777777777766544444444444444444443
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.10 E-value=0.082 Score=38.25 Aligned_cols=63 Identities=27% Similarity=0.300 Sum_probs=40.1
Q ss_pred CCccEEEEeccc--CCCCCccccc-CCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCCCc
Q 036743 17 PSLTQLSLTNAE--LKYDPLPALE-KLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMFWV 80 (91)
Q Consensus 17 ~~L~~L~L~~~~--l~~~~l~~L~-~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~~l 80 (91)
++|++|.|++++ +...++.+|. +.|+|..|+|.++....... +.....|+.|+.|.+..|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhcCC
Confidence 567777777763 3345677765 49999999996543222221 111235999999999877653
No 51
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.42 E-value=0.91 Score=19.91 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=10.9
Q ss_pred CCCccEEEEecccCCCC
Q 036743 16 PPSLTQLSLTNAELKYD 32 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~ 32 (91)
|.+|++|+|..|++..-
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35677777777766543
No 52
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.42 E-value=0.91 Score=19.91 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=10.9
Q ss_pred CCCccEEEEecccCCCC
Q 036743 16 PPSLTQLSLTNAELKYD 32 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~ 32 (91)
|.+|++|+|..|++..-
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35677777777766543
No 53
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=81.96 E-value=2.5 Score=33.67 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=19.2
Q ss_pred cCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 9 VLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 9 lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+|..+. ++|+.|+|++|.+..-+- .+ .++|+.|.+..+
T Consensus 193 LP~~Ip--~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N 230 (754)
T PRK15370 193 IPACIP--EQITTLILDNNELKSLPE-NL--QGNIKTLYANSN 230 (754)
T ss_pred CCcccc--cCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCC
Confidence 555442 356667776666553221 11 235666665433
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=81.72 E-value=0.48 Score=34.65 Aligned_cols=36 Identities=33% Similarity=0.634 Sum_probs=16.3
Q ss_pred CCccEEEEecccCCCCCc----ccccCCCCCceeEEeccc
Q 036743 17 PSLTQLSLTNAELKYDPL----PALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l----~~L~~Lp~L~~L~L~~~~ 52 (91)
++|..+.+..+.+..+-+ ..+...|+|+.|+|+++.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 444555555554443332 123345555555554443
No 55
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=81.58 E-value=0.77 Score=34.38 Aligned_cols=60 Identities=25% Similarity=0.191 Sum_probs=36.1
Q ss_pred CCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccC-cEEEeeCCCCCccCcEEeccC
Q 036743 14 KFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSG-RKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 14 ~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~-~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
..|++|++|+|++|+++.-.--...++..++.|.|..+.... +...| .+...|+.|++.+
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f---~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMF---QGLSGLKTLSLYD 331 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhh---hccccceeeeecC
Confidence 358888888888888765544567777777777775443221 11111 2355566666654
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=79.96 E-value=0.92 Score=33.07 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=30.7
Q ss_pred cCCCCCccEEEEecccCCCCCccc-ccCCCCCceeEEeccc
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPA-LEKLPHLRVLKLKQSL 52 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~-L~~Lp~L~~L~L~~~~ 52 (91)
+..+.+|..|++.++++. .+.. +..+++|++|+|..+.
T Consensus 91 l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~ 129 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNK 129 (414)
T ss_pred cccccceeeeeccccchh--hcccchhhhhcchheeccccc
Confidence 445789999999999874 4555 8999999999997554
No 57
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=77.89 E-value=0.74 Score=36.83 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=33.7
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcc-cccCCCCCceeEEecccccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLP-ALEKLPHLRVLKLKQSLYSG 55 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~-~L~~Lp~L~~L~L~~~~~~~ 55 (91)
+|+|+. +|.. +.+|++|++++|++. .+| .++++++|..|+|.++...+
T Consensus 411 ~N~Lss-IP~l---~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 411 GNRLTS-LPML---PSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCcCCC-CCcc---hhhhhhhhhccCccc--ccChHHhhccCCCeEECCCCCCCc
Confidence 355554 6653 346788899998876 344 48889999999997766554
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.68 E-value=0.096 Score=37.58 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=14.4
Q ss_pred CCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 16 PPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
|.+.++|.+++|.+ +|+.+..+||.|..|.|+
T Consensus 18 l~~vkKLNcwg~~L--~DIsic~kMp~lEVLsLS 49 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL--DDISICEKMPLLEVLSLS 49 (388)
T ss_pred HHHhhhhcccCCCc--cHHHHHHhcccceeEEee
Confidence 34444444444433 344444444444444443
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.54 E-value=1.5 Score=31.98 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCCCccEEEEecccCCCCCcccc-cCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 15 FPPSLTQLSLTNAELKYDPLPAL-EKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 15 ~L~~L~~L~L~~~~l~~~~l~~L-~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+++.|+.|.|+.|.+.. ++..+ ..+.+|+.|.|.+....=....-. ....|++++|+++.
T Consensus 95 ~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~-l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSS-LDDLPKVTELHMSD 155 (418)
T ss_pred cCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhh-hhcchhhhhhhhcc
Confidence 45555555555555432 23233 334455555552111111111101 23467777776654
No 60
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=76.95 E-value=0.48 Score=35.45 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=32.0
Q ss_pred ceecccccCcc-cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 2 DVELSQMVLSK-YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 2 ~~~~~~~lP~w-i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
.|+++. ||+- +..+++|+.|+|+.|.+..-.-..+..|++|..|.+..
T Consensus 76 qN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 76 QNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred cCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 356665 5543 45678888888888777655556677777777776654
No 61
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.25 E-value=0.55 Score=21.38 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=13.6
Q ss_pred CCccEEEEecccCCCCCcccc
Q 036743 17 PSLTQLSLTNAELKYDPLPAL 37 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l~~L 37 (91)
++|++|+|++|.+..+-...|
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 467888888887765444333
No 62
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.96 E-value=2.4 Score=19.16 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=10.8
Q ss_pred CCCccEEEEecccCC
Q 036743 16 PPSLTQLSLTNAELK 30 (91)
Q Consensus 16 L~~L~~L~L~~~~l~ 30 (91)
+.+|+.|+|+.|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 457788888887763
No 63
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.38 E-value=1.6 Score=33.69 Aligned_cols=37 Identities=35% Similarity=0.528 Sum_probs=26.2
Q ss_pred CCCCccEEEEecccCCC-CCcccccC-CCCCceeEEecc
Q 036743 15 FPPSLTQLSLTNAELKY-DPLPALEK-LPHLRVLKLKQS 51 (91)
Q Consensus 15 ~L~~L~~L~L~~~~l~~-~~l~~L~~-Lp~L~~L~L~~~ 51 (91)
..+.+.++.|++|+|.. +.+..|.+ -|.|+.|+|.++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 35677778888888765 45666664 788888888654
No 64
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.50 E-value=4.6 Score=17.68 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=11.0
Q ss_pred CccCcEEeccCCCCc
Q 036743 66 FLQLKILRPKSMFWV 80 (91)
Q Consensus 66 Fp~Lk~L~l~~~~~l 80 (91)
+|+|+.|.+..+.++
T Consensus 1 c~~L~~L~l~~C~~i 15 (26)
T smart00367 1 CPNLRELDLSGCTNI 15 (26)
T ss_pred CCCCCEeCCCCCCCc
Confidence 367888888877654
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=68.43 E-value=7.7 Score=29.09 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=7.5
Q ss_pred CCCccEEEEecccC
Q 036743 16 PPSLTQLSLTNAEL 29 (91)
Q Consensus 16 L~~L~~L~L~~~~l 29 (91)
+.++++|+++.|.+
T Consensus 51 ~~~l~~L~Is~c~L 64 (426)
T PRK15386 51 ARASGRLYIKDCDI 64 (426)
T ss_pred hcCCCEEEeCCCCC
Confidence 35555666655543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.99 E-value=1.6 Score=31.58 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=43.0
Q ss_pred CCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccC-cEEEeeCCCCCccCcEEeccC
Q 036743 15 FPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSG-RKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 15 ~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~-~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
.++.|.-|.|+.|++ ..+.++.....|+.|+|+.+.... .++. . -.+.|+|+.|+|..
T Consensus 39 kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~-Y-LknlpsLr~LWL~E 97 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELE-Y-LKNLPSLRTLWLDE 97 (388)
T ss_pred hcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHH-H-HhcCchhhhHhhcc
Confidence 478999999999987 468889999999999997665443 2222 1 34677888777754
No 67
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=65.77 E-value=1.1 Score=36.15 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=28.1
Q ss_pred CCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 15 FPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 15 ~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
.++.|++|+|+.|++.. ...|..+|.|+.|+|..+.
T Consensus 185 ll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred HHHHhhhhccchhhhhh--hHHHHhcccccccccccch
Confidence 36888899999998753 3378889999999996554
No 68
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=48.88 E-value=5.7 Score=18.03 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=9.1
Q ss_pred cccCCCCCceeEE
Q 036743 36 ALEKLPHLRVLKL 48 (91)
Q Consensus 36 ~L~~Lp~L~~L~L 48 (91)
+++.||+|+.|+.
T Consensus 8 Vi~~LPqL~~LD~ 20 (26)
T smart00446 8 VIRLLPQLRKLDX 20 (26)
T ss_pred HHHHCCccceecc
Confidence 4566788877765
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.12 E-value=10 Score=27.82 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCCccEEEEecccCCCCCccc-ccCCCCCceeEEeccc
Q 036743 15 FPPSLTQLSLTNAELKYDPLPA-LEKLPHLRVLKLKQSL 52 (91)
Q Consensus 15 ~L~~L~~L~L~~~~l~~~~l~~-L~~Lp~L~~L~L~~~~ 52 (91)
.+.||+.|-|.++.+......+ +..+|.++.|.++.+.
T Consensus 119 p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 4579999999999887766654 6679888888776553
No 70
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=36.47 E-value=21 Score=28.34 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=29.9
Q ss_pred cCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 9 VLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 9 lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
+|.-...| .|.+||++.|++.--++ .+.+|..|++|.|..+..
T Consensus 204 lp~El~~L-pLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 204 LPEELCSL-PLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPL 246 (722)
T ss_pred CCHHHhCC-ceeeeecccCceeecch-hhhhhhhheeeeeccCCC
Confidence 66666655 47788888887643333 478888888888876653
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=35.30 E-value=0.65 Score=34.84 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=31.4
Q ss_pred CCCccEEEEecccC-CCCCcccccC-CCCCceeEEeccccc-CcEEEeeCCCCCccCcEEeccCCCCcc
Q 036743 16 PPSLTQLSLTNAEL-KYDPLPALEK-LPHLRVLKLKQSLYS-GRKLACAGFGGFLQLKILRPKSMFWVE 81 (91)
Q Consensus 16 L~~L~~L~L~~~~l-~~~~l~~L~~-Lp~L~~L~L~~~~~~-~~~l~~~~~~~Fp~Lk~L~l~~~~~l~ 81 (91)
.+|+++|.+.+|.. +...+..+++ .+.|++|.+...... ...+..- +.++|+|+++.++-++.+.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l-a~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL-AEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH-HHhhhhHHHhhhccCchhh
Confidence 45566666655531 2222334443 556666655321211 1111111 4568888888777665443
No 72
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=34.25 E-value=27 Score=15.76 Aligned_cols=14 Identities=43% Similarity=0.788 Sum_probs=9.8
Q ss_pred CCccEEEEecccCC
Q 036743 17 PSLTQLSLTNAELK 30 (91)
Q Consensus 17 ~~L~~L~L~~~~l~ 30 (91)
++|+.|..++|++.
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 46777777777754
No 73
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=13 Score=26.66 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=33.5
Q ss_pred cccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcE
Q 036743 11 SKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKI 71 (91)
Q Consensus 11 ~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~ 71 (91)
+|+..++==+.|-.++-++-.|+..-+|+... +|-| ......+.++|....||||||+
T Consensus 252 ~WL~yFpL~q~lfVsGerli~dPa~E~~rVqd--FLgL-kr~it~khfyFnktKGFpClkK 309 (360)
T KOG3704|consen 252 NWLRYFPLRQILFVSGERLISDPAGELGRVQD--FLGL-KRVITDKHFYFNKTKGFPCLKK 309 (360)
T ss_pred HHHHhCchhheEEecCceeecCcHHHHHHHHH--Hhcc-cceeccceeEEecCCCceeeec
Confidence 45543322233445566666677666666543 2334 2344566678875679999996
No 74
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=32.83 E-value=13 Score=22.33 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=12.4
Q ss_pred ccccCcccCCCCCccEEE
Q 036743 6 SQMVLSKYKFPPSLTQLS 23 (91)
Q Consensus 6 ~~~lP~wi~~L~~L~~L~ 23 (91)
+..+|-.+.+|+||++|.
T Consensus 87 s~~ipWQ~KSLpNLkkLh 104 (112)
T COG5439 87 SKNIPWQMKSLPNLKKLH 104 (112)
T ss_pred CCCCcchhccccchHhhC
Confidence 345666667888888764
No 75
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=32.79 E-value=3.5 Score=32.38 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=35.1
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
|.+.. +|.-|+.+..|.+|+.+.|++. .-.+-|+.|.+|+.|.++.+.
T Consensus 153 Nkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 153 NKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred Ccccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhh
Confidence 44554 8888888888888888888753 334458888888888886554
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=26.32 E-value=24 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=19.8
Q ss_pred CCCccEEEEecccCCCCCcccc----cCCCCCceeEEec
Q 036743 16 PPSLTQLSLTNAELKYDPLPAL----EKLPHLRVLKLKQ 50 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~L----~~Lp~L~~L~L~~ 50 (91)
.+.|++++|++|-+.....+.| ++=..|.+|.+.+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence 4666666666666554444333 3445666666643
No 77
>KOG3337 consensus Protein similar to predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.36 E-value=37 Score=22.65 Aligned_cols=19 Identities=0% Similarity=-0.227 Sum_probs=14.4
Q ss_pred ccccCcccCCCCCccEEEE
Q 036743 6 SQMVLSKYKFPPSLTQLSL 24 (91)
Q Consensus 6 ~~~lP~wi~~L~~L~~L~L 24 (91)
.|++|.|+..+-+.+...+
T Consensus 59 qgRlPrWasrll~i~~v~v 77 (201)
T KOG3337|consen 59 QGRLPRWASRLLDIQVVYV 77 (201)
T ss_pred cCCCchhhhhhcccceeEE
Confidence 4799999998766666554
No 78
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.53 E-value=80 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=27.8
Q ss_pred CceecccccCcc-cCCCCCccEEEEecccCCCCC-ccccc
Q 036743 1 QDVELSQMVLSK-YKFPPSLTQLSLTNAELKYDP-LPALE 38 (91)
Q Consensus 1 ~~~~~~~~lP~w-i~~L~~L~~L~L~~~~l~~~~-l~~L~ 38 (91)
++|+|.. ||.- +..+.+|++|+|..|-+.|+. +..|.
T Consensus 3 SnN~Lst-Lp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~ 41 (2740)
T TIGR00864 3 SNNKIST-IEEGICANLCNLSEIDLSGNPFECDCGLARLP 41 (2740)
T ss_pred CCCcCCc-cChHHhccCCCceEEEeeCCccccccccHHHH
Confidence 3688886 6654 567999999999999998884 54433
Done!