Query 036743
Match_columns 91
No_of_seqs 132 out of 1028
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:01:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g39_A Variable lymphocyte rec 98.5 2.4E-07 8.1E-12 58.4 5.1 74 2-77 39-112 (170)
2 2r9u_A Variable lymphocyte rec 98.4 3.1E-07 1E-11 58.2 5.3 74 2-77 42-115 (174)
3 1w8a_A SLIT protein; signaling 98.4 3.3E-07 1.1E-11 58.6 4.6 39 13-51 50-88 (192)
4 2ell_A Acidic leucine-rich nuc 98.4 2.5E-07 8.7E-12 57.5 3.8 71 2-76 33-104 (168)
5 2je0_A Acidic leucine-rich nuc 98.3 2.5E-07 8.4E-12 56.5 2.8 71 2-76 26-97 (149)
6 4fcg_A Uncharacterized protein 98.3 7.7E-07 2.6E-11 61.2 5.5 71 3-77 193-263 (328)
7 3e6j_A Variable lymphocyte rec 98.3 8.7E-07 3E-11 58.0 5.1 52 2-53 49-100 (229)
8 3rgz_A Protein brassinosteroid 98.3 4.4E-07 1.5E-11 68.6 3.9 74 2-77 641-714 (768)
9 2wfh_A SLIT homolog 2 protein 98.3 8.2E-07 2.8E-11 57.0 4.4 50 2-52 40-89 (193)
10 2v9t_B SLIT homolog 2 protein 98.3 1.2E-06 4E-11 57.2 5.0 48 3-50 66-113 (220)
11 4ezg_A Putative uncharacterize 98.3 5.4E-07 1.8E-11 57.6 3.1 49 3-51 98-146 (197)
12 2wfh_A SLIT homolog 2 protein 98.2 1.7E-06 5.7E-11 55.5 5.2 74 2-77 63-136 (193)
13 4fcg_A Uncharacterized protein 98.2 1.4E-06 4.8E-11 59.9 5.1 40 9-50 96-136 (328)
14 2ell_A Acidic leucine-rich nuc 98.2 3.6E-07 1.2E-11 56.8 1.7 74 3-77 81-157 (168)
15 4eco_A Uncharacterized protein 98.2 1.8E-06 6.1E-11 64.2 5.5 73 2-77 192-283 (636)
16 2v70_A SLIT-2, SLIT homolog 2 98.2 2.2E-06 7.6E-11 55.9 5.2 50 3-52 67-116 (220)
17 2o6r_A Variable lymphocyte rec 98.2 2.7E-06 9.2E-11 53.3 5.3 51 2-52 37-87 (177)
18 4ezg_A Putative uncharacterize 98.2 1E-06 3.4E-11 56.3 3.4 70 2-77 121-191 (197)
19 1ogq_A PGIP-2, polygalacturona 98.2 7.5E-07 2.6E-11 60.8 2.8 41 8-48 67-108 (313)
20 3vq2_A TLR4, TOLL-like recepto 98.2 1.8E-06 6.1E-11 62.9 4.8 74 3-77 90-163 (606)
21 2z81_A CD282 antigen, TOLL-lik 98.2 2.3E-06 7.7E-11 61.6 5.2 50 3-52 60-109 (549)
22 3zyi_A Leucine-rich repeat-con 98.2 5.2E-06 1.8E-10 59.0 7.0 47 3-49 85-131 (452)
23 2o6r_A Variable lymphocyte rec 98.2 2.9E-06 9.9E-11 53.1 5.1 74 2-77 61-134 (177)
24 2z80_A TOLL-like receptor 2, v 98.1 3.2E-06 1.1E-10 58.1 5.4 75 2-77 85-159 (353)
25 2v70_A SLIT-2, SLIT homolog 2 98.1 2.3E-06 8E-11 55.7 4.5 75 2-78 90-164 (220)
26 1w8a_A SLIT protein; signaling 98.1 2.4E-06 8.2E-11 54.5 4.3 74 2-77 63-136 (192)
27 1ogq_A PGIP-2, polygalacturona 98.1 1.5E-06 5.3E-11 59.2 3.5 51 3-53 87-137 (313)
28 3m19_A Variable lymphocyte rec 98.1 2.8E-06 9.7E-11 56.0 4.6 48 3-50 45-92 (251)
29 3m19_A Variable lymphocyte rec 98.1 3.2E-06 1.1E-10 55.8 4.8 50 2-51 68-117 (251)
30 2o6s_A Variable lymphocyte rec 98.1 4E-06 1.4E-10 53.7 5.1 35 14-48 49-83 (208)
31 1dce_A Protein (RAB geranylger 98.1 1.6E-06 5.5E-11 64.1 3.5 71 2-76 472-542 (567)
32 2z66_A Variable lymphocyte rec 98.1 4.4E-06 1.5E-10 56.2 5.3 49 3-51 160-209 (306)
33 3e6j_A Variable lymphocyte rec 98.1 3.1E-06 1E-10 55.4 4.3 50 2-52 73-123 (229)
34 2z62_A TOLL-like receptor 4, v 98.1 4.9E-06 1.7E-10 55.3 5.2 37 12-48 71-107 (276)
35 3j0a_A TOLL-like receptor 5; m 98.1 3.4E-06 1.2E-10 64.3 5.0 74 2-76 82-157 (844)
36 3rfs_A Internalin B, repeat mo 98.1 5.2E-06 1.8E-10 55.4 5.3 51 2-52 118-168 (272)
37 3rgz_A Protein brassinosteroid 98.1 2.6E-06 9E-11 64.3 4.3 72 3-76 476-547 (768)
38 2v9t_B SLIT homolog 2 protein 98.1 5.9E-06 2E-10 53.8 5.3 73 2-77 89-162 (220)
39 3rfs_A Internalin B, repeat mo 98.1 5.7E-06 1.9E-10 55.2 5.3 50 2-51 94-143 (272)
40 2ifg_A High affinity nerve gro 98.1 1.9E-06 6.4E-11 59.1 3.0 69 4-76 20-89 (347)
41 3v47_A TOLL-like receptor 5B a 98.1 4.4E-06 1.5E-10 58.8 4.9 49 3-51 285-333 (455)
42 2z66_A Variable lymphocyte rec 98.1 3.1E-06 1.1E-10 56.9 3.9 74 2-77 184-258 (306)
43 2o6s_A Variable lymphocyte rec 98.1 6E-06 2.1E-10 52.8 5.1 51 2-52 61-111 (208)
44 4g8a_A TOLL-like receptor 4; l 98.1 5.5E-06 1.9E-10 59.9 5.4 50 3-52 504-553 (635)
45 4g8a_A TOLL-like receptor 4; l 98.1 4.8E-06 1.6E-10 60.2 5.1 49 3-51 86-134 (635)
46 1xku_A Decorin; proteoglycan, 98.1 4.1E-06 1.4E-10 57.0 4.4 72 2-76 201-272 (330)
47 2r9u_A Variable lymphocyte rec 98.0 6.1E-06 2.1E-10 52.1 4.8 71 2-77 21-91 (174)
48 3v47_A TOLL-like receptor 5B a 98.0 7.2E-06 2.5E-10 57.7 5.5 73 2-76 308-380 (455)
49 3zyj_A Leucine-rich repeat-con 98.0 1.5E-05 5.1E-10 56.4 6.9 47 3-49 74-120 (440)
50 2o6q_A Variable lymphocyte rec 98.0 7.6E-06 2.6E-10 54.4 5.1 38 12-49 128-165 (270)
51 2ifg_A High affinity nerve gro 98.0 8.6E-06 2.9E-10 55.8 5.3 72 3-77 42-113 (347)
52 2je0_A Acidic leucine-rich nuc 98.0 1.9E-06 6.7E-11 52.5 1.9 73 2-77 51-123 (149)
53 1ozn_A Reticulon 4 receptor; N 98.0 1.4E-05 4.7E-10 53.3 6.1 47 3-49 115-161 (285)
54 2z63_A TOLL-like receptor 4, v 98.0 5.3E-06 1.8E-10 59.7 4.2 73 3-77 455-528 (570)
55 3g39_A Variable lymphocyte rec 98.0 9.2E-06 3.2E-10 51.0 4.8 71 2-77 18-88 (170)
56 1wwl_A Monocyte differentiatio 98.0 9.7E-06 3.3E-10 55.0 5.1 50 2-52 104-160 (312)
57 3t6q_A CD180 antigen; protein- 98.0 1.5E-05 5E-10 58.1 6.2 47 3-50 288-334 (606)
58 4b8c_D Glucose-repressible alc 98.0 4.5E-06 1.5E-10 63.2 3.5 71 2-77 256-326 (727)
59 1xku_A Decorin; proteoglycan, 98.0 1.6E-05 5.3E-10 54.1 5.9 51 2-52 61-111 (330)
60 3vq2_A TLR4, TOLL-like recepto 98.0 9.1E-06 3.1E-10 59.2 5.0 39 12-50 419-457 (606)
61 1ozn_A Reticulon 4 receptor; N 98.0 9E-06 3.1E-10 54.2 4.5 38 12-49 51-88 (285)
62 1p9a_G Platelet glycoprotein I 97.9 1E-05 3.5E-10 54.7 4.8 48 3-51 87-134 (290)
63 3zyi_A Leucine-rich repeat-con 97.9 6.8E-06 2.3E-10 58.4 4.1 74 2-77 227-300 (452)
64 2ft3_A Biglycan; proteoglycan, 97.9 1.4E-05 4.8E-10 54.5 5.1 51 2-52 63-113 (332)
65 1p9a_G Platelet glycoprotein I 97.9 1.4E-05 4.8E-10 54.0 5.1 73 2-76 109-181 (290)
66 2o6q_A Variable lymphocyte rec 97.9 1.6E-05 5.3E-10 52.9 5.1 48 3-50 47-94 (270)
67 2ft3_A Biglycan; proteoglycan, 97.9 6.9E-06 2.4E-10 56.0 3.3 47 3-51 227-274 (332)
68 3zyj_A Leucine-rich repeat-con 97.9 9E-06 3.1E-10 57.5 3.9 74 2-77 216-289 (440)
69 2z63_A TOLL-like receptor 4, v 97.9 1.2E-05 4.2E-10 57.8 4.6 73 4-77 87-159 (570)
70 3o6n_A APL1; leucine-rich repe 97.9 1.6E-05 5.4E-10 55.2 5.0 46 4-49 104-149 (390)
71 3oja_B Anopheles plasmodium-re 97.9 1.6E-05 5.6E-10 58.4 5.2 47 3-49 109-155 (597)
72 1dce_A Protein (RAB geranylger 97.9 1.2E-05 4.3E-10 59.3 4.6 68 2-77 450-518 (567)
73 1wwl_A Monocyte differentiatio 97.9 3.2E-06 1.1E-10 57.5 1.3 74 2-76 130-210 (312)
74 2xot_A Amphoterin-induced prot 97.9 9.9E-06 3.4E-10 56.2 3.6 50 2-51 48-98 (361)
75 2xot_A Amphoterin-induced prot 97.9 1.7E-05 5.7E-10 55.0 4.7 51 2-52 73-123 (361)
76 3o6n_A APL1; leucine-rich repe 97.9 2.5E-05 8.6E-10 54.2 5.6 51 2-52 78-128 (390)
77 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 2.3E-05 8E-10 56.9 5.6 48 3-50 62-109 (562)
78 2id5_A Lingo-1, leucine rich r 97.9 2.1E-05 7E-10 55.9 5.2 48 3-50 66-113 (477)
79 4ecn_A Leucine-rich repeat pro 97.9 1.4E-05 4.8E-10 62.0 4.7 71 3-76 435-524 (876)
80 2z7x_B TOLL-like receptor 1, v 97.9 1.6E-05 5.3E-10 57.0 4.6 47 3-49 31-77 (520)
81 3t6q_A CD180 antigen; protein- 97.9 1.7E-05 5.8E-10 57.8 4.8 47 3-49 67-113 (606)
82 2ast_B S-phase kinase-associat 97.8 5E-07 1.7E-11 61.4 -3.2 39 10-48 111-149 (336)
83 3oja_B Anopheles plasmodium-re 97.8 2.2E-05 7.4E-10 57.8 5.3 52 2-53 84-135 (597)
84 2z7x_B TOLL-like receptor 1, v 97.8 8.9E-06 3.1E-10 58.3 3.2 71 2-76 54-124 (520)
85 2z62_A TOLL-like receptor 4, v 97.8 1.6E-05 5.4E-10 52.8 4.0 49 3-51 38-86 (276)
86 2z81_A CD282 antigen, TOLL-lik 97.8 9.7E-06 3.3E-10 58.3 3.2 52 2-53 35-86 (549)
87 4eco_A Uncharacterized protein 97.8 4.2E-06 1.4E-10 62.1 1.1 44 9-52 239-284 (636)
88 1ds9_A Outer arm dynein; leuci 97.8 6.6E-07 2.3E-11 57.2 -3.1 50 2-53 27-82 (198)
89 1a9n_A U2A', U2A'; complex (nu 97.8 8.6E-06 2.9E-10 51.1 1.9 30 18-49 43-72 (176)
90 2id5_A Lingo-1, leucine rich r 97.8 5.3E-05 1.8E-09 53.8 6.2 47 3-49 114-160 (477)
91 2ast_B S-phase kinase-associat 97.8 3.1E-06 1.1E-10 57.4 -0.2 69 7-77 212-282 (336)
92 2xwt_C Thyrotropin receptor; s 97.8 3.3E-05 1.1E-09 50.3 4.6 49 2-50 40-89 (239)
93 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 4.4E-05 1.5E-09 55.4 5.4 53 2-54 362-416 (562)
94 3oja_A Leucine-rich immune mol 97.7 2.2E-05 7.6E-10 56.7 3.6 52 2-53 129-181 (487)
95 2z80_A TOLL-like receptor 2, v 97.7 2.5E-05 8.6E-10 53.6 3.4 49 2-51 109-159 (353)
96 1xeu_A Internalin C; cellular 97.7 6.3E-05 2.2E-09 50.2 5.2 67 2-76 115-181 (263)
97 2xwt_C Thyrotropin receptor; s 97.7 4.4E-05 1.5E-09 49.7 4.3 37 12-49 150-187 (239)
98 1h6t_A Internalin B; cell adhe 97.7 6E-05 2.1E-09 50.9 5.0 35 13-49 86-120 (291)
99 1a9n_A U2A', U2A'; complex (nu 97.7 7.6E-06 2.6E-10 51.3 0.4 38 12-49 59-96 (176)
100 3e4g_A ATP synthase subunit S, 97.7 3E-05 1E-09 50.0 3.2 49 3-52 38-96 (176)
101 3j0a_A TOLL-like receptor 5; m 97.6 0.0001 3.4E-09 56.3 6.4 48 3-50 276-323 (844)
102 4ecn_A Leucine-rich repeat pro 97.6 2E-05 7E-10 61.1 2.6 69 2-76 557-628 (876)
103 4glp_A Monocyte differentiatio 97.6 2.5E-05 8.7E-10 52.8 2.8 28 3-30 101-130 (310)
104 1h6u_A Internalin H; cell adhe 97.6 8.7E-05 3E-09 50.4 5.5 35 13-49 81-115 (308)
105 4glp_A Monocyte differentiatio 97.6 0.0001 3.5E-09 49.8 5.6 76 2-77 126-207 (310)
106 4fmz_A Internalin; leucine ric 97.6 2.2E-05 7.7E-10 53.4 2.2 69 3-77 253-321 (347)
107 1ziw_A TOLL-like receptor 3; i 97.6 5E-05 1.7E-09 56.0 3.9 12 65-76 143-154 (680)
108 1h6t_A Internalin B; cell adhe 97.6 8.6E-05 2.9E-09 50.1 4.7 37 13-51 108-144 (291)
109 3o53_A Protein LRIM1, AGAP0063 97.6 7.1E-05 2.4E-09 50.8 4.2 71 2-76 129-200 (317)
110 4fmz_A Internalin; leucine ric 97.6 0.00011 3.7E-09 50.0 5.1 36 13-50 84-119 (347)
111 1ziw_A TOLL-like receptor 3; i 97.5 0.00013 4.6E-09 53.8 5.7 10 67-76 171-180 (680)
112 1h6u_A Internalin H; cell adhe 97.5 0.00011 3.9E-09 49.8 4.7 35 13-49 147-181 (308)
113 3goz_A Leucine-rich repeat-con 97.5 8.4E-06 2.9E-10 56.4 -1.0 76 2-77 7-90 (362)
114 3bz5_A Internalin-J, INLJ; leu 97.5 0.0002 6.7E-09 51.4 5.9 46 3-53 52-97 (457)
115 1ds9_A Outer arm dynein; leuci 97.5 2.8E-06 9.7E-11 54.2 -3.4 12 65-76 138-149 (198)
116 1xeu_A Internalin C; cellular 97.5 0.00023 7.7E-09 47.4 5.6 47 3-53 51-97 (263)
117 1m9s_A Internalin B; cell inva 97.5 0.00016 5.4E-09 53.9 5.2 35 13-49 105-139 (605)
118 4b8c_D Glucose-repressible alc 97.4 3.1E-05 1.1E-09 58.7 1.2 70 2-77 233-303 (727)
119 1m9s_A Internalin B; cell inva 97.4 0.00013 4.4E-09 54.4 4.2 36 13-50 83-118 (605)
120 4ay9_X Follicle-stimulating ho 97.4 0.00019 6.3E-09 49.4 4.7 47 3-52 19-65 (350)
121 3e4g_A ATP synthase subunit S, 97.4 3.1E-05 1.1E-09 49.9 0.4 67 13-81 81-153 (176)
122 3bz5_A Internalin-J, INLJ; leu 97.4 0.00027 9.4E-09 50.6 5.2 36 13-51 208-243 (457)
123 2ra8_A Uncharacterized protein 97.3 0.00015 5.3E-09 51.0 3.6 61 16-77 192-262 (362)
124 3oja_A Leucine-rich immune mol 97.3 0.0002 6.8E-09 51.7 3.8 49 2-52 43-91 (487)
125 3o53_A Protein LRIM1, AGAP0063 97.3 0.00029 1E-08 47.8 4.4 48 2-51 153-201 (317)
126 3rw6_A Nuclear RNA export fact 97.3 4.2E-05 1.4E-09 52.1 -0.0 37 16-52 169-207 (267)
127 1o6v_A Internalin A; bacterial 97.2 0.00034 1.2E-08 49.7 4.5 12 37-48 108-119 (466)
128 1o6v_A Internalin A; bacterial 97.2 0.00046 1.6E-08 49.1 4.7 35 13-49 305-339 (466)
129 4ay9_X Follicle-stimulating ho 97.0 0.00066 2.3E-08 46.7 3.8 70 3-78 164-234 (350)
130 3g06_A SSPH2 (leucine-rich rep 96.8 4.6E-05 1.6E-09 57.0 -3.0 44 3-51 251-294 (622)
131 1jl5_A Outer protein YOPM; leu 96.7 0.0028 9.5E-08 45.4 5.7 33 18-52 174-206 (454)
132 1jl5_A Outer protein YOPM; leu 96.7 0.0029 1E-07 45.2 5.7 34 17-52 131-164 (454)
133 3cvr_A Invasion plasmid antige 96.7 0.0028 9.4E-08 47.1 5.5 11 39-49 138-148 (571)
134 3ogk_B Coronatine-insensitive 96.7 0.0001 3.5E-09 53.3 -2.1 42 8-49 284-326 (592)
135 2ca6_A RAN GTPase-activating p 96.7 9.3E-05 3.2E-09 51.3 -2.4 39 14-52 91-133 (386)
136 2p1m_B Transport inhibitor res 96.6 0.00024 8.2E-09 51.3 -0.7 62 16-78 455-517 (594)
137 3ogk_B Coronatine-insensitive 96.6 0.00036 1.2E-08 50.4 -0.0 37 16-52 462-499 (592)
138 3cvr_A Invasion plasmid antige 96.5 0.0042 1.4E-07 46.1 5.5 44 2-52 68-111 (571)
139 3g06_A SSPH2 (leucine-rich rep 96.5 0.0025 8.7E-08 47.6 4.0 30 17-50 221-250 (622)
140 2ca6_A RAN GTPase-activating p 96.5 3.9E-05 1.3E-09 53.2 -5.5 22 9-30 114-135 (386)
141 3goz_A Leucine-rich repeat-con 96.4 0.00016 5.4E-09 49.9 -2.6 43 11-53 44-92 (362)
142 3rw6_A Nuclear RNA export fact 96.3 0.0014 4.6E-08 44.6 1.6 74 2-76 179-260 (267)
143 1z7x_W Ribonuclease inhibitor; 96.1 7.1E-05 2.4E-09 52.6 -5.6 42 9-50 333-379 (461)
144 2p1m_B Transport inhibitor res 96.0 0.00057 1.9E-08 49.3 -1.4 34 16-49 104-138 (594)
145 3rfe_A Platelet glycoprotein I 95.7 0.012 4.2E-07 35.4 3.8 44 8-53 24-67 (130)
146 1z7x_W Ribonuclease inhibitor; 95.2 0.00066 2.2E-08 47.6 -3.6 34 18-51 86-123 (461)
147 2ra8_A Uncharacterized protein 95.0 0.0048 1.7E-07 43.3 0.3 63 9-75 164-227 (362)
148 3un9_A NLR family member X1; l 92.7 0.0017 5.9E-08 45.5 -5.6 36 16-51 154-193 (372)
149 3sb4_A Hypothetical leucine ri 92.2 0.23 7.9E-06 33.4 4.8 34 16-49 225-258 (329)
150 3un9_A NLR family member X1; l 87.2 0.0074 2.5E-07 42.2 -6.1 61 17-77 101-165 (372)
151 3sb4_A Hypothetical leucine ri 86.5 1.5 5.1E-05 29.4 5.3 68 3-75 236-305 (329)
152 1io0_A Tropomodulin; LRR prote 74.7 0.26 8.9E-06 30.8 -1.7 64 14-77 90-161 (185)
153 1io0_A Tropomodulin; LRR prote 73.7 0.44 1.5E-05 29.7 -0.9 9 66-74 120-128 (185)
154 3rfe_A Platelet glycoprotein I 72.9 1.7 5.9E-05 25.7 1.7 31 2-33 40-71 (130)
155 4fdw_A Leucine rich hypothetic 71.0 14 0.00049 25.7 6.4 34 15-48 269-307 (401)
156 4h09_A Hypothetical leucine ri 50.6 30 0.001 23.3 4.9 33 16-48 285-317 (379)
No 1
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.46 E-value=2.4e-07 Score=58.39 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=50.7
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|+|.+-.|..+..+++|++|+|++|++..-+-..++++++|++|+|..+...+.. -.....+++|++|.+.+-
T Consensus 39 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 39 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP--RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred CCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC--HHHhcCCCCCCEEEeCCC
Confidence 56777755777788888888888888877555555788888888888766544311 111245788888888654
No 2
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.45 E-value=3.1e-07 Score=58.20 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=48.9
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|+|.+-.|..+..+++|++|+|++|++..-+-..++++++|++|+|..+...+- .-.....+++|+.|.+.+-
T Consensus 42 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 42 NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI--PRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCSEEECCSS
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee--CHHHhccccCCCEEEeCCC
Confidence 4667765567777788888888888877654444567888888888865554431 1111235778888888654
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.40 E-value=3.3e-07 Score=58.62 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=21.0
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+..+++|++|+|++|.+.......++++++|++|+|..+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 455555666666555554433344555555555555433
No 4
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.38 E-value=2.5e-07 Score=57.52 Aligned_cols=71 Identities=24% Similarity=0.174 Sum_probs=44.6
Q ss_pred ceecc-cccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELS-QMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~-~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++. +.+|..+..+++|++|++++|.+... ..++.+++|++|++..+...+. +... ...+++|++|.+.+
T Consensus 33 ~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 33 NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDML-AEKLPNLTHLNLSG 104 (168)
T ss_dssp SCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHH-HHHCTTCCEEECBS
T ss_pred CCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHH-HhhCCCCCEEeccC
Confidence 45666 56888777788888888888876543 6778888888888865554331 1100 11255555555543
No 5
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.34 E-value=2.5e-07 Score=56.55 Aligned_cols=71 Identities=23% Similarity=0.118 Sum_probs=48.5
Q ss_pred ceecc-cccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELS-QMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~-~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++. +.+|..+..+++|++|++++|.+... +.++++++|++|++..+...+. +... ...+++|++|.+.+
T Consensus 26 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~-~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 26 NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVL-AEKCPNLTHLNLSG 97 (149)
T ss_dssp TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHH-HHHCTTCCEEECTT
T ss_pred CCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHH-hhhCCCCCEEECCC
Confidence 46676 67888888899999999999887644 7788899999999876554431 1100 12356666666654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.33 E-value=7.7e-07 Score=61.20 Aligned_cols=71 Identities=25% Similarity=0.271 Sum_probs=43.2
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
|++. .+|.++..+++|++|+|++|.+.. ..+.++++++|++|+|..+...+. +... .+++++|++|++.++
T Consensus 193 n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~-~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 193 TGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPI-FGGRAPLKRLILKDC 263 (328)
T ss_dssp ECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB-CCCC-TTCCCCCCEEECTTC
T ss_pred CCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhh-hHHH-hcCCCCCCEEECCCC
Confidence 4555 577777777777777777777653 233577777777777754443332 1111 345667777766654
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.31 E-value=8.7e-07 Score=58.04 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=38.3
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
+|++.+..|.++..+++|++|+|++|.+..-+...++.+++|++|+|..+..
T Consensus 49 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 49 DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 4667776677777888888888888887655555578888888888865543
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.29 E-value=4.4e-07 Score=68.56 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=51.6
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|+|++.+|.+++.+++|+.|+|+.|.+.......+++|++|++|+|..+...|.. .-. ...+++|++|++.+.
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i-p~~-l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI-PQA-MSALTMLTEIDLSNN 714 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC-CGG-GGGCCCCSEEECCSS
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC-ChH-HhCCCCCCEEECcCC
Confidence 46777778888888888888888888777665667888888888888766655432 111 235777888887654
No 9
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.28 E-value=8.2e-07 Score=56.99 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=30.7
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++. .+|..+..+++|++|+|+.|.+..-+...++.|++|+.|+|..+.
T Consensus 40 ~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 40 GNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp SSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 34554 366666666777777777776655444456666777776665443
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.26 E-value=1.2e-06 Score=57.17 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=23.2
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
|++++..|..+..+++|++|+|++|.+..-+-..++.+++|+.|.|..
T Consensus 66 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 66 NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 444443344555555555555555554433333345555555555543
No 11
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.26 E-value=5.4e-07 Score=57.59 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=25.6
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|++.+..|..+..+++|++|+++.|.+....+..++++++|+.|++..+
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 3444444555555555555555555554434444555555555555433
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.24 E-value=1.7e-06 Score=55.52 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=57.1
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++++-.|..+..+++|++|+|++|.+..-+...++.+++|++|+|..+.... +..+....+++|+.|.+.+-
T Consensus 63 ~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 63 NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe--eChhhhhcCccccEEEeCCC
Confidence 577887556778899999999999999987766679999999999997665543 11111345889999999764
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.24 E-value=1.4e-06 Score=59.89 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=18.8
Q ss_pred cCcccCCCCCccEEEEecccCCCCCcc-cccCCCCCceeEEec
Q 036743 9 VLSKYKFPPSLTQLSLTNAELKYDPLP-ALEKLPHLRVLKLKQ 50 (91)
Q Consensus 9 lP~wi~~L~~L~~L~L~~~~l~~~~l~-~L~~Lp~L~~L~L~~ 50 (91)
+|..+..+++|++|+|++|.+. .+| .++++++|++|+|..
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~ 136 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLAR 136 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEES
T ss_pred cChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCC
Confidence 4544444555555555555443 222 244555555555543
No 14
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.22 E-value=3.6e-07 Score=56.80 Aligned_cols=74 Identities=24% Similarity=0.158 Sum_probs=35.1
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCC-cccccCCCCCceeEEecccccCcEE-E-eeCCCCCccCcEEeccCC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDP-LPALEKLPHLRVLKLKQSLYSGRKL-A-CAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~-l~~L~~Lp~L~~L~L~~~~~~~~~l-~-~~~~~~Fp~Lk~L~l~~~ 77 (91)
|++.+.+|.++..+++|++|+|++|.+...+ +..++.+++|++|++..+...+... . .. ...+++|++|++.+.
T Consensus 81 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV-FKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH-HTTCSSCCEETTEET
T ss_pred CcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH-HHhCccCcEecCCCC
Confidence 4444444444444555555555555554322 2445555555555554443332111 0 00 234666666666544
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.21 E-value=1.8e-06 Score=64.16 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=54.0
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCC-----------------Cccccc--CCCCCceeEEecccccCcEEEeeC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYD-----------------PLPALE--KLPHLRVLKLKQSLYSGRKLACAG 62 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~-----------------~l~~L~--~Lp~L~~L~L~~~~~~~~~l~~~~ 62 (91)
.|+|++ +|.+++.+++|++|+|+.|.+... -.+.++ ++++|++|+|..+...+. +.-.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~- 268 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTF- 268 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTT-
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHH-
Confidence 468888 999999999999999999988763 344578 999999999976665542 1111
Q ss_pred CCCCccCcEEeccCC
Q 036743 63 FGGFLQLKILRPKSM 77 (91)
Q Consensus 63 ~~~Fp~Lk~L~l~~~ 77 (91)
.+.+++|++|++.+.
T Consensus 269 l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 269 LKALPEMQLINVACN 283 (636)
T ss_dssp TTTCSSCCEEECTTC
T ss_pred HhcCCCCCEEECcCC
Confidence 345777888877654
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.20 E-value=2.2e-06 Score=55.85 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=28.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
|++.+-.|..+..+++|++|+|+.|.+...+...++.+++|++|.|..+.
T Consensus 67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 44554333455566666666666666654444446666666666665443
No 17
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.19 E-value=2.7e-06 Score=53.29 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=31.9
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++.+-.|..+..+++|++|++++|.+..-+-..++.+++|+.|++..+.
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 37 SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 355554333445667777777777777664444446777777777775544
No 18
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.19 E-value=1e-06 Score=56.32 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=56.3
Q ss_pred ceecccccCcccCCCCCccEEEEeccc-CCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAE-LKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~-l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++.+..|.++..+++|++|++++|. +. +++.++.+|+|+.|++..+...+-. . ...+++|+.|.+.+-
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--~~~~l~~l~~L~~L~l~~n~i~~~~---~-l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDYR---G-IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC--CCGGGGGCSSCCEEECTTBCCCCCT---T-GGGCSSCCEEEECBC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc--ccHhhcCCCCCCEEECCCCCCcChH---H-hccCCCCCEEEeeCc
Confidence 577887789999999999999999997 43 4678999999999999766554421 2 356999999999764
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.18 E-value=7.5e-07 Score=60.76 Aligned_cols=41 Identities=27% Similarity=0.241 Sum_probs=16.7
Q ss_pred ccCcccCCCCCccEEEEec-ccCCCCCcccccCCCCCceeEE
Q 036743 8 MVLSKYKFPPSLTQLSLTN-AELKYDPLPALEKLPHLRVLKL 48 (91)
Q Consensus 8 ~lP~wi~~L~~L~~L~L~~-~~l~~~~l~~L~~Lp~L~~L~L 48 (91)
.+|..+..+++|++|+|++ +.+.......++++++|++|+|
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~L 108 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEE
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEEC
Confidence 3444444444444444442 3333222223444444444444
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.17 E-value=1.8e-06 Score=62.92 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=36.5
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
|++.+..|.++..+++|++|+|++|.+...+...++++++|++|++..+...+..+... .+.+++|++|.+.+.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSS
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCC
Confidence 44444335555555555555555555543333345555555555554443332121111 234667777777653
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.17 E-value=2.3e-06 Score=61.60 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=26.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
|++.+..|..+..+++|++|+|++|.+...+...++++++|++|++..+.
T Consensus 60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 60 SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 44444444555555566666666555544333345566666666664433
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.17 E-value=5.2e-06 Score=58.96 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=21.0
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
|++.+..|..+..+++|++|+|++|.+...+...++++++|++|+|.
T Consensus 85 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34444334444444555555554444433333334444444444443
No 23
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.17 E-value=2.9e-06 Score=53.13 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=43.7
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++++-.|..+..+++|++|+|++|.+...+...++++++|++|++..+...+ +.......+++|++|++.+.
T Consensus 61 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSS
T ss_pred CCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE--eCHHHhcCCcccCEEEecCC
Confidence 355665333445677777777777777765444456777777777776554432 11110134677777777654
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.15 E-value=3.2e-06 Score=58.10 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=40.5
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++.+..|..+..+++|++|+|++|.+..-+...++++++|++|++..+....-... .....+++|++|.+.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 85 SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEES
T ss_pred CCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch-hhhccCCCCcEEECCCC
Confidence 3555554455666667777777777666544443466677777777754433221100 00234666666666543
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.14 E-value=2.3e-06 Score=55.73 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=57.5
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMF 78 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~ 78 (91)
+|++.+-.|..+..+++|++|+|++|.+.......++.+++|+.|+|..+...+.. . .....+++|+.|.+.+-+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-P-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-T-TTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-H-HHhcCCCCCCEEEecCcC
Confidence 57788755667889999999999999988766677999999999999766654421 1 113468899999997643
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.14 E-value=2.4e-06 Score=54.55 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=49.7
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
.|++++..|..+..+++|++|+|++|++...+...++.+++|++|+|..+...+.. . .....+++|++|.+.+-
T Consensus 63 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 63 RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-P-GSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-T-TSSTTCTTCCEEECTTC
T ss_pred CCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC-H-HHhhcCCCCCEEEeCCC
Confidence 46677766777778888888888888776655556778888888888655544311 1 11345777888877653
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.13 E-value=1.5e-06 Score=59.19 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=32.9
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
|++.+.+|..+..+++|++|+|++|.+.......++++++|++|+|..+..
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence 556666777777777777777777766544444567777777777754443
No 28
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.13 E-value=2.8e-06 Score=56.00 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=24.7
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
|++.+..|..+..+++|++|+|++|.+...+...++++++|++|+|..
T Consensus 45 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 444443344455555566666655555443333455555555555543
No 29
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.13 E-value=3.2e-06 Score=55.76 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=29.8
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+|++.+..|..+..+++|++|+|++|.+...+...++.+++|++|+|..+
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 35555544555566666666666666665444445666666666666543
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.12 E-value=4e-06 Score=53.68 Aligned_cols=35 Identities=37% Similarity=0.347 Sum_probs=14.1
Q ss_pred CCCCCccEEEEecccCCCCCcccccCCCCCceeEE
Q 036743 14 KFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKL 48 (91)
Q Consensus 14 ~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L 48 (91)
..+++|++|+++++++..-+...++.+++|++|+|
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 34444444444444433222222344444444444
No 31
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=1.6e-06 Score=64.09 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=37.3
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|+|. .+|..++.+++|++|+|+.|.+.. +|.+++|++|+.|.|..+...+....-. .+.+++|+.|.+.+
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQG 542 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CGGGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTT
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCC--CcccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecC
Confidence 34555 356666666666666666665543 4456666666666665444333210001 23466666666654
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.10 E-value=4.4e-06 Score=56.20 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=28.0
Q ss_pred eeccc-ccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQ-MVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~-~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|++.+ .+|.++..+++|++|++++|.+.......++++++|+.|+|..+
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 44444 35666666666666666666655443445566666666666443
No 33
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.10 E-value=3.1e-06 Score=55.42 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=31.2
Q ss_pred ceecccccC-cccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVL-SKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP-~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++.. +| ..+..+++|++|+|++|.+..-+-..++.+++|+.|.|..+.
T Consensus 73 ~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 73 SNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCC-cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 455654 44 445667777777777777664444446677777777775443
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.09 E-value=4.9e-06 Score=55.32 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=17.4
Q ss_pred ccCCCCCccEEEEecccCCCCCcccccCCCCCceeEE
Q 036743 12 KYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKL 48 (91)
Q Consensus 12 wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L 48 (91)
.+..+++|++|+|++|.+...+...++++++|++|.+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4444555555555555444333333444444444444
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.09 E-value=3.4e-06 Score=64.35 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=48.4
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCccc--ccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPA--LEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~--L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++.+..|.++..+++|++|+|+.|.+....++. +++|++|+.|+|..+.+.+....-. .+.+++|++|.+.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS-FGKLNSLKSIDFSS 157 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG-GGTCSSCCEEEEES
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchh-HhhCCCCCEEECCC
Confidence 46677766788888888888888888776544443 7788888888887655544221111 23567777777755
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.09 E-value=5.2e-06 Score=55.39 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=29.1
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++.+..|.++..+++|++|++++|.+...+...++.+++|+.|++..+.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 355555444445666666666666666554433345666666666665443
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.08 E-value=2.6e-06 Score=64.33 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=36.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
|++.+.+|.++..+++|++|+|++|++.......++++++|++|+|..+...+. +... ...+++|++|++.+
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~-l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-IPAE-LGDCRSLIWLDLNT 547 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-CCGG-GGGCTTCCEEECCS
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-CCHH-HcCCCCCCEEECCC
Confidence 445555555555555555555555555443334455555555555544433321 1111 23466666666654
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.08 E-value=5.9e-06 Score=53.82 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=56.1
Q ss_pred ceecccccCcc-cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSK-YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~w-i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++.. +|.. +..+++|++|+|++|.+...+...++.+++|++|+|..+...+... .....+++|+.|.+.+-
T Consensus 89 ~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 89 GNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSS
T ss_pred CCcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEeCCC
Confidence 577775 6665 5789999999999999987777789999999999998766554211 11345889999999764
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.07 E-value=5.7e-06 Score=55.20 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=29.2
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+|++.+-.|.++..+++|++|+++.|.+...+...++.+++|++|.+..+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC
Confidence 34555533444566666666666666665444444666666666666544
No 40
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.07 E-value=1.9e-06 Score=59.09 Aligned_cols=69 Identities=25% Similarity=0.143 Sum_probs=36.3
Q ss_pred ecccccCcccCCCCCccEEEEec-ccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 4 ELSQMVLSKYKFPPSLTQLSLTN-AELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 4 ~~~~~lP~wi~~L~~L~~L~L~~-~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|.. +|. +..+.+|++|+|++ |.+..-+-..++.|++|+.|+|..+...+ +.-.....+++|+.|+|.+
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCS
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeCCC
Confidence 4443 666 66666666666664 66554444456666666666665444332 1100012355555555543
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.07 E-value=4.4e-06 Score=58.79 Aligned_cols=49 Identities=27% Similarity=0.270 Sum_probs=28.6
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|++.+.+|.++..+++|++|+|++|.+...+...++++++|++|+|..+
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 4455555666666666666666666655444445666666666666443
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.06 E-value=3.1e-06 Score=56.94 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=41.0
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCc-cCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFL-QLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp-~Lk~L~l~~~ 77 (91)
+|++.+..|.++..+++|++|+|++|.+...+...++.+++|+.|+|..+...+... .. ...+| +|++|.+.+.
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~-~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QE-LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-SS-CCCCCTTCCEEECTTC
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH-HH-HHhhhccCCEEEccCC
Confidence 355555446666666667777776666655444456666777777665444333111 00 22343 6666666543
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.06 E-value=6e-06 Score=52.82 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=32.3
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++.+-.+..+..+++|++|+|+.|.+..-+...++++++|++|++..+.
T Consensus 61 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 61 GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc
Confidence 355664333445677777777777777665444456777777777775444
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.06 E-value=5.5e-06 Score=59.89 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=26.1
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
|++.+-.|.++..+++|++|+|++|++..-+...++.|++|++|+|+.+.
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 44554445555555555555555555544444445555555555554443
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.06 E-value=4.8e-06 Score=60.23 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=25.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|++.+--|..+..+++|++|+|++|++..-+...+++|++|++|+|..+
T Consensus 86 N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 86 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 4444422334555666666666665554434444555566666555433
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.05 E-value=4.1e-06 Score=57.00 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=42.1
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++.+..|.++..+++|++|+|++|.+...+...++.+++|+.|+|..+.... +... ...+++|++|.+.+
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~-l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGG-LADHKYIQVVYLHN 272 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCTT-TTTCSSCCEEECCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--CChh-hccCCCcCEEECCC
Confidence 355555556667777777777777777655444457777777777775543321 1111 23456666666653
No 47
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.04 E-value=6.1e-06 Score=52.11 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=52.9
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++. .+|..+. ++|++|+|++|++..-+...++++++|++|+|..+...+ +.-.....+++|++|.+.+.
T Consensus 21 ~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 21 NIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS
T ss_pred CCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCC
Confidence 45564 4888664 899999999999987666679999999999998766544 11110246899999998753
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.04 E-value=7.2e-06 Score=57.68 Aligned_cols=73 Identities=23% Similarity=0.202 Sum_probs=44.1
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++.+..|.++..+++|++|+|++|.+...+...++++++|+.|+|..+...+ +......++++|++|++.+
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA--LGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCS
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc--cChhhccccccccEEECCC
Confidence 466666566777777778888887777755555567777777777776543321 1000123455566665544
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.02 E-value=1.5e-05 Score=56.38 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=22.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
|++..-.|..+..+++|++|+|++|.+..-+...++++++|++|+|.
T Consensus 74 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 74 NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 44444333444455555555555555443333344555555555553
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.02 E-value=7.6e-06 Score=54.44 Aligned_cols=38 Identities=34% Similarity=0.384 Sum_probs=19.1
Q ss_pred ccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 12 KYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 12 wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
.+..+++|++|+|++|.+...+...++++++|+.|+|.
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 34445555555555555443333335555555555554
No 51
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.01 E-value=8.6e-06 Score=55.76 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=53.9
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
|+|.+-.|.++..|++|++|+|+.|++..-+-..+++|++|++|+|..+...+- .-...... .|+.|.+.+.
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~~-~L~~l~l~~N 113 (347)
T 2ifg_A 42 QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL--SWKTVQGL-SLQELVLSGN 113 (347)
T ss_dssp SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC--CSTTTCSC-CCCEEECCSS
T ss_pred CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee--CHHHcccC-CceEEEeeCC
Confidence 788875568899999999999999999876666789999999999987765541 11101122 3888888654
No 52
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.01 E-value=1.9e-06 Score=52.46 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=47.0
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++.+ + ..+..+++|++|++++|.+.......++++++|+.|++..+...+...... ...+++|++|.+.+.
T Consensus 51 ~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~-~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 51 NVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123 (149)
T ss_dssp TSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGG-GGGCTTCCEEECTTC
T ss_pred CCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHH-HhhCCCCCEEeCcCC
Confidence 355554 3 566778888888888888765433345668888888886665444211011 345788888888654
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.00 E-value=1.4e-05 Score=53.34 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=23.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
|++.+..|.++..+++|++|++++|.+...+...++++++|+.|+|.
T Consensus 115 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 34444334445555555555555555543333345555555555554
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.99 E-value=5.3e-06 Score=59.72 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=41.9
Q ss_pred eecc-cccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 3 VELS-QMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 3 ~~~~-~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
|++. +.+|.++..+++|++|+|++|.+.......++++++|++|+|..+...+.. -.....+++|++|++.+.
T Consensus 455 n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP--DGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSS
T ss_pred CcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC--HHHhhcccCCcEEEecCC
Confidence 4444 346666666667777777666665444445666777777777544433311 000234677777777653
No 55
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.99 E-value=9.2e-06 Score=50.97 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=53.1
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++.. +|..+ .++|++|+|+.|.+..-+...++++++|++|+|..+...+ +.-....++++|++|.+.+.
T Consensus 18 ~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 18 GKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCC
Confidence 455664 88766 4899999999999987766779999999999997766543 11111246899999999754
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.98 E-value=9.7e-06 Score=55.04 Aligned_cols=50 Identities=26% Similarity=0.331 Sum_probs=30.9
Q ss_pred ceecccccCccc--CCCCCccEEEEecccCCCCCcccccCC-----CCCceeEEeccc
Q 036743 2 DVELSQMVLSKY--KFPPSLTQLSLTNAELKYDPLPALEKL-----PHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi--~~L~~L~~L~L~~~~l~~~~l~~L~~L-----p~L~~L~L~~~~ 52 (91)
+|++.+.+|..+ ..+++|++|+|++|.+... ...++++ ++|++|+|..+.
T Consensus 104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS
T ss_pred CCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC
Confidence 456666677665 6677777777777776554 2345554 666666665443
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.97 E-value=1.5e-05 Score=58.10 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=27.2
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
|++. .+|.++..+++|++|++++|.+.......++++++|+.|.+..
T Consensus 288 n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred CccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 4444 3666666666666666666665543333455666666666643
No 58
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.96 E-value=4.5e-06 Score=63.23 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=49.2
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|+|+ .+|..+..+++|++|+|++|.+. .-...+++|++|++|.|..+... .+... .+.+++|++|.|.+.
T Consensus 256 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~--~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 256 GNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT--TLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp TSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC--CCCSS-TTSCTTCCCEECTTS
T ss_pred CCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC--ccChh-hhcCCCccEEeCCCC
Confidence 46677 58888888888888888888876 22235788888888888655443 22222 346788888888764
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.96 E-value=1.6e-05 Score=54.11 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=37.0
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++.+..|..+..+++|++|+|++|.+.......++++++|++|++..+.
T Consensus 61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 456666444567788888888888888765545568888888888886544
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.96 E-value=9.1e-06 Score=59.16 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=18.4
Q ss_pred ccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 12 KYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 12 wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
++..+++|++|++++|.+.......++++++|+.|++..
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 444445555555555444333333445555555555543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.95 E-value=9e-06 Score=54.25 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=17.6
Q ss_pred ccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 12 KYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 12 wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
.+..+++|++|+|+.+.+.......++++++|++|++.
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 34444555555555544433323344445555555543
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.95 E-value=1e-05 Score=54.72 Aligned_cols=48 Identities=31% Similarity=0.268 Sum_probs=30.0
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|++. .+|..+..+++|++|+++.|++..-+...++++++|++|.|..+
T Consensus 87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 4454 36666666667777777777665544445666777777766544
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.95 E-value=6.8e-06 Score=58.35 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=45.1
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++.+..|.++..+++|++|+|++|++...+...++.+++|+.|+|..+...+. .......+++|+.|.+.+.
T Consensus 227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--PHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC--CTTSSTTCTTCCEEECCSS
T ss_pred CCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc--ChHHhccccCCCEEEccCC
Confidence 3556665566677777777777777766655555667777777777765543321 1110234677888877654
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.92 E-value=1.4e-05 Score=54.47 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=36.9
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++.+-.|..+..+++|++|+|++|.+.......++++++|++|++..+.
T Consensus 63 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 63 NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred CCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 455665445677788888888888887765555668888888888886543
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.92 E-value=1.4e-05 Score=54.05 Aligned_cols=73 Identities=25% Similarity=0.241 Sum_probs=49.3
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++.+-.|..+..+++|++|+|++|++..-+...++++++|+.|+|..+.... +..+....+++|++|.+.+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCS
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCC
Confidence 567776445678888999999999988876655668888999999886554432 1111023466777776654
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.92 E-value=1.6e-05 Score=52.92 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=25.5
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
|++..-.|..+..+++|++|+|+++.+..-+-..++++++|++|+|..
T Consensus 47 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 344432223455566666666666665543333455666666666643
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.90 E-value=6.9e-06 Score=56.00 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=21.6
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcc-cccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLP-ALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~-~L~~Lp~L~~L~L~~~ 51 (91)
|++.+..|.++..+++|++|+|++|.+. .+| .++++++|+.|++..+
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSS
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCC
Confidence 3344433334444555555555555444 122 2455555555555433
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.89 E-value=9e-06 Score=57.53 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=42.5
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++.+..|.++..+++|++|+|++|++...+...++++++|+.|+|..+..... .......+++|+.|.+.+.
T Consensus 216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL--PHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC--CTTTTSSCTTCCEEECCSS
T ss_pred CCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc--ChhHhccccCCCEEEcCCC
Confidence 3455554466666666666777666666555555566677777777755443321 1110234677777777653
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.89 E-value=1.2e-05 Score=57.83 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=33.1
Q ss_pred ecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 4 ELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 4 ~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
++....|..+..+++|++|+++++.+..-+-..++++++|++|++..+...+..+.-. ...+++|++|++.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSN 159 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTS
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCC
Confidence 3443333444555555555555554433222235555555555554333322111111 223566777766543
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.89 E-value=1.6e-05 Score=55.24 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=19.4
Q ss_pred ecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 4 ELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 4 ~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
++.+..|..+..+++|++|+|++|.+..-+-..++++++|++|++.
T Consensus 104 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 3333333334444444444444444432222223444444444443
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.88 E-value=1.6e-05 Score=58.38 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=20.5
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
|.+.+..|.+++.+++|++|+|++|.+..-+-..++.+++|++|.|.
T Consensus 109 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 33444333334444455555554444443222234445555555553
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.88 E-value=1.2e-05 Score=59.35 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=55.6
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCc-ccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPL-PALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l-~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+|++++ +|. +..+++|+.|+|++|.+. .+ ..+++|++|+.|.|..+...+ +. . .+.+++|++|.+.+.
T Consensus 450 ~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~-l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 450 HKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VD-G-VANLPRLQELLLCNN 518 (567)
T ss_dssp TSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CG-G-GTTCSSCCEEECCSS
T ss_pred CCCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cc-c-cCCCCCCcEEECCCC
Confidence 577876 898 889999999999999987 34 469999999999998776665 22 2 567999999999764
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.88 E-value=3.2e-06 Score=57.47 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=47.8
Q ss_pred ceecccccCcccCCC-----CCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcE-EEee-CCCCCccCcEEec
Q 036743 2 DVELSQMVLSKYKFP-----PSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRK-LACA-GFGGFLQLKILRP 74 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L-----~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~-l~~~-~~~~Fp~Lk~L~l 74 (91)
+|++.+. |.++..+ ++|++|+|++|++...+...++++++|+.|++..+...+.. +.-. ....+++|++|.+
T Consensus 130 ~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 208 (312)
T 1wwl_A 130 NVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208 (312)
T ss_dssp SCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEEC
T ss_pred CCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEEC
Confidence 4667763 7776654 88888999888887666667888888888888766543310 0000 0144666666666
Q ss_pred cC
Q 036743 75 KS 76 (91)
Q Consensus 75 ~~ 76 (91)
.+
T Consensus 209 ~~ 210 (312)
T 1wwl_A 209 RN 210 (312)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.86 E-value=9.9e-06 Score=56.16 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=29.1
Q ss_pred ceecccccCcccC-CCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 2 DVELSQMVLSKYK-FPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 2 ~~~~~~~lP~wi~-~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+|+|++-.+.++. .+++|++|+|++|++..-+...++.+++|++|+|..+
T Consensus 48 ~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 48 HNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp SSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3555554444554 5666666666666665444345666666666666543
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.86 E-value=1.7e-05 Score=55.02 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=33.2
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++.+-.|..+..+++|++|+|++|++..-+-..++.+++|+.|+|..+.
T Consensus 73 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 73 HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence 456665444556677777777777777655444457777777777775443
No 76
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.86 E-value=2.5e-05 Score=54.19 Aligned_cols=51 Identities=18% Similarity=0.412 Sum_probs=38.1
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++....|..+..+++|++|+|++|.+...+...++++++|++|+|..+.
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc
Confidence 456665445577788888899998888776655668888999999886544
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.86 E-value=2.3e-05 Score=56.92 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=24.6
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
|++.+-.|..+..+++|++|+|++|.+...+...++++++|++|+|..
T Consensus 62 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 444443334455555555555555555443334455555555555543
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.86 E-value=2.1e-05 Score=55.91 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=26.8
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
|++.+..|..+..+++|++|+|+.|.+..-+...++++++|++|+|..
T Consensus 66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 444544455555666666666666655544444456666666666643
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=1.4e-05 Score=61.99 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=39.2
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCC-----------------Cccccc--CCCCCceeEEecccccCcEEEeeCC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYD-----------------PLPALE--KLPHLRVLKLKQSLYSGRKLACAGF 63 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~-----------------~l~~L~--~Lp~L~~L~L~~~~~~~~~l~~~~~ 63 (91)
|+|.+ +|..++.+++|++|+|+.|.+..+ -.+.++ +|++|++|.|..+...+.. .-. .
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~-l 511 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDF-L 511 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGG-G
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHH-H
Confidence 55666 677777777777777777766552 222355 6777777777554433321 111 2
Q ss_pred CCCccCcEEeccC
Q 036743 64 GGFLQLKILRPKS 76 (91)
Q Consensus 64 ~~Fp~Lk~L~l~~ 76 (91)
..+++|+.|.+.+
T Consensus 512 ~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 512 YDLPELQSLNIAC 524 (876)
T ss_dssp GGCSSCCEEECTT
T ss_pred hCCCCCCEEECcC
Confidence 2355555555544
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.85 E-value=1.6e-05 Score=57.03 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=21.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
|++.+..|..+..+++|++|+|++|++.......++++++|++|+|.
T Consensus 31 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 31 NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 33443233344445555555555554443222345555555555554
No 81
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.85 E-value=1.7e-05 Score=57.76 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=21.8
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
|++.+..|..+..+++|++|+|++|.+.......++++++|++|++.
T Consensus 67 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 67 CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 34444344445555555555555554433323334445555555443
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.84 E-value=5e-07 Score=61.36 Aligned_cols=39 Identities=26% Similarity=0.171 Sum_probs=16.1
Q ss_pred CcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEE
Q 036743 10 LSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKL 48 (91)
Q Consensus 10 P~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L 48 (91)
|..+..+++|++|+|++|.+.......++++++|++|+|
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 333334444444444444433222333444444444444
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.84 E-value=2.2e-05 Score=57.75 Aligned_cols=52 Identities=17% Similarity=0.404 Sum_probs=40.4
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
+|++.+..|..+..+++|++|+|++|.+...+...++.+++|++|+|..+..
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 4667765566788889999999999888776666688999999999975543
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.84 E-value=8.9e-06 Score=58.28 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=43.5
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++.+..|..+..+++|++|+|++|++. .+|.. .+++|++|+|..+...+..+... .+..++|++|++.+
T Consensus 54 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~-~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 54 HNRIQYLDISVFKFNQELEYLDLSHNKLV--KISCH-PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLST 124 (520)
T ss_dssp SSCCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC-CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEE
T ss_pred CCccCCcChHHhhcccCCCEEecCCCcee--ecCcc-ccCCccEEeccCCccccccchhh-hccCCcceEEEecC
Confidence 46677655777788888888888887765 35444 77777777776555443221111 23455666665543
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.83 E-value=1.6e-05 Score=52.82 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=27.6
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|++.+-.|..+..+++|++|++++|.+...+...++++++|++|+|..+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 4455433335556666666666666655433334666666666666433
No 86
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.83 E-value=9.7e-06 Score=58.30 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=40.8
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
+|++.+..|..+..+++|++|+|++|++...+...++++++|++|+|..+..
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 4667776677788899999999999988765556788999999999976543
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.82 E-value=4.2e-06 Score=62.13 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=37.5
Q ss_pred cCcccC--CCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 9 VLSKYK--FPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 9 lP~wi~--~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|..++ .+++|++|+|+.|.+.....+.+++|++|++|+|..+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 999998 89999999999998776555679999999999997665
No 88
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.79 E-value=6.6e-07 Score=57.20 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=39.5
Q ss_pred ceecccccCc------ccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 2 DVELSQMVLS------KYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 2 ~~~~~~~lP~------wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
++++.+.+|. .+..+++|++|+|++|.+.. ++.++++++|++|++..+..
T Consensus 27 ~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLI 82 (198)
T ss_dssp EEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CCCHHHHTTCCEEEEEEEEE
T ss_pred eeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--ccccccCCCCCEEECCCCCc
Confidence 4677777776 77788899999999988765 55888899999999975543
No 89
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.77 E-value=8.6e-06 Score=51.05 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=12.8
Q ss_pred CccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 18 SLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 18 ~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
+|++|++++|.+.. ++.++.+++|++|++.
T Consensus 43 ~L~~L~Ls~N~l~~--~~~l~~l~~L~~L~Ls 72 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK--LDGFPLLRRLKTLLVN 72 (176)
T ss_dssp CCSEEECCSSCCCE--ECCCCCCSSCCEEECC
T ss_pred CCCEEECCCCCCCc--ccccccCCCCCEEECC
Confidence 44444444444332 2344444444444443
No 90
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.77 E-value=5.3e-05 Score=53.77 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=20.8
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
|++.+..|..+..+++|++|+|+.|.+.......++.+++|+.|+|.
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 34444334444445555555555444433322334444444444443
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.77 E-value=3.1e-06 Score=57.37 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=44.7
Q ss_pred cccCcccCCCCCccEEEEeccc-CCCCCcccccCCCCCceeEEecccccC-cEEEeeCCCCCccCcEEeccCC
Q 036743 7 QMVLSKYKFPPSLTQLSLTNAE-LKYDPLPALEKLPHLRVLKLKQSLYSG-RKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 7 ~~lP~wi~~L~~L~~L~L~~~~-l~~~~l~~L~~Lp~L~~L~L~~~~~~~-~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+.+|..+..+++|++|++++|. +....++.++++++|+.|+|..+.... ..+. . ...+++|++|.+.++
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~-l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-E-LGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-G-GGGCTTCCEEECTTS
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-H-HhcCCCCCEEeccCc
Confidence 3456666677888888888887 555667778888888888886543211 1110 1 234788888888654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.75 E-value=3.3e-05 Score=50.31 Aligned_cols=49 Identities=8% Similarity=0.208 Sum_probs=31.1
Q ss_pred ceecccccCcccCCCCCccEEEEeccc-CCCCCcccccCCCCCceeEEec
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAE-LKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~-l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
+|++.+-.|..+..+++|++|+++.|. +..-+-..++++++|++|++..
T Consensus 40 ~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 355555333356677777788877775 5543334567777777777754
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.73 E-value=4.4e-05 Score=55.44 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=40.2
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCC-cc-cccCCCCCceeEEeccccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDP-LP-ALEKLPHLRVLKLKQSLYS 54 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~-l~-~L~~Lp~L~~L~L~~~~~~ 54 (91)
+|++.+.+|.++..+++|++|+|++|++..-+ ++ .++++++|+.|++..+...
T Consensus 362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 46777778888888899999999988876532 22 4788899999988655543
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.72 E-value=2.2e-05 Score=56.69 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=32.6
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCccccc-CCCCCceeEEecccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALE-KLPHLRVLKLKQSLY 53 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~-~Lp~L~~L~L~~~~~ 53 (91)
+|++++..|..++.+++|++|+|++|.+.......++ .+++|+.|+|..+..
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 4556665566666677777777777776654444454 577777777754443
No 95
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.69 E-value=2.5e-05 Score=53.60 Aligned_cols=49 Identities=27% Similarity=0.195 Sum_probs=33.6
Q ss_pred ceecccccCc-ccCCCCCccEEEEecccCCCCCc-ccccCCCCCceeEEecc
Q 036743 2 DVELSQMVLS-KYKFPPSLTQLSLTNAELKYDPL-PALEKLPHLRVLKLKQS 51 (91)
Q Consensus 2 ~~~~~~~lP~-wi~~L~~L~~L~L~~~~l~~~~l-~~L~~Lp~L~~L~L~~~ 51 (91)
+|++.+ +|. ++..+++|++|++++|.+..-+. ..++++++|++|++..+
T Consensus 109 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 109 YNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp SSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 456665 443 46778888888888887764333 35778888888888654
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.68 E-value=6.3e-05 Score=50.15 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=40.5
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++++ +| .+..+++|++|++++|++.. ++.++++++|+.|++..+...+. .....+++|+.|.+.+
T Consensus 115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~--~~~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 115 NNELRD-TD-SLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SSCCSB-SG-GGTTCTTCCEEECTTSCCCB--CGGGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEE
T ss_pred CCccCC-Ch-hhcCcccccEEECCCCcCCC--ChHHccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCC
Confidence 344544 33 36667777777777776643 35677777777777765544432 1134577777777754
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.68 E-value=4.4e-05 Score=49.72 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=17.2
Q ss_pred ccCCCCCcc-EEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 12 KYKFPPSLT-QLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 12 wi~~L~~L~-~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
++..+++|+ +|+++++.+..-+-..+.. ++|+.|.|.
T Consensus 150 ~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred cccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 345555555 5555555544211112222 555555554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.67 E-value=6e-05 Score=50.87 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=16.3
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
+..+++|++|++++|.+.. ++.++.+++|++|++.
T Consensus 86 l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLE 120 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEECT
T ss_pred cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEECC
Confidence 4444455555555444322 3344455555555443
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.67 E-value=7.6e-06 Score=51.29 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=16.6
Q ss_pred ccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 12 KYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 12 wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
.+..+++|++|+|++|.+..-+...++.+|+|++|.+.
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 34444455555555554432221123445555555554
No 100
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=3e-05 Score=49.99 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=37.4
Q ss_pred eecccccCcccCC---CC-------CccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 3 VELSQMVLSKYKF---PP-------SLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 3 ~~~~~~lP~wi~~---L~-------~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
|+|.+ -++|+.. || +|++|++++|.++...+..|..+++|+.|+|..+.
T Consensus 38 vrf~~-~~~w~~~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 38 VRYHG-QQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp EEETT-CSSCBCCGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred EEEcC-CceEEeccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 55665 4666642 22 58999999999888888889999999999997543
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.65 E-value=0.0001 Score=56.27 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=23.9
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
|++.+..|.++..+++|++|+|+.|.+.......++.+++|++|+|..
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 344444445555555555555555554433333455555555555543
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=2e-05 Score=61.09 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=42.4
Q ss_pred ceecccccCc--ccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCcc-CcEEeccC
Q 036743 2 DVELSQMVLS--KYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQ-LKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~--wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~-Lk~L~l~~ 76 (91)
+|++. .+|. ++..+++|++|+|+.|.+. .+|.++++++|+.|.|..+... .+.-. ...+++ |++|.+.+
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~l~--~lp~~-l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE--EIPED-FCAFTDQVEGLGFSH 628 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSCCS--CCCTT-SCEECTTCCEEECCS
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCccc--cchHH-HhhccccCCEEECcC
Confidence 45666 5777 7777777777777777765 4557777777777777654433 11111 223455 66666544
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.65 E-value=2.5e-05 Score=52.84 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=14.3
Q ss_pred eecccccCccc--CCCCCccEEEEecccCC
Q 036743 3 VELSQMVLSKY--KFPPSLTQLSLTNAELK 30 (91)
Q Consensus 3 ~~~~~~lP~wi--~~L~~L~~L~L~~~~l~ 30 (91)
|++.+..|..+ ..+++|++|+|++|.+.
T Consensus 101 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 101 LKITGTMPPLPLEATGLALSSLRLRNVSWA 130 (310)
T ss_dssp CCCBSCCCCCSSSCCCBCCSSCEEESCCCS
T ss_pred CEeccchhhhhhhccCCCCCEEEeeccccc
Confidence 44555555544 44555555555555543
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.64 E-value=8.7e-05 Score=50.39 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=15.3
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
+..+++|++|+|++|.+.. ++.++++++|+.|++.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLT 115 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC--CGGGTTCTTCCEEECT
T ss_pred HccCCCCCEEEccCCcCCC--chhhcCCCCCCEEECC
Confidence 3444444444444444322 2344444444444443
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.63 E-value=0.0001 Score=49.82 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=49.3
Q ss_pred ceecccccC----cccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcE-EEee-CCCCCccCcEEecc
Q 036743 2 DVELSQMVL----SKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRK-LACA-GFGGFLQLKILRPK 75 (91)
Q Consensus 2 ~~~~~~~lP----~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~-l~~~-~~~~Fp~Lk~L~l~ 75 (91)
+|++.+..| ..+..+++|++|+|+.|.+...+...++.+++|++|+|..+...+.. +... ..+.+++|++|.+.
T Consensus 126 ~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 126 NVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp SCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred cccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 355555433 22235788899999988886666667888999999988766543321 1111 02468888888887
Q ss_pred CC
Q 036743 76 SM 77 (91)
Q Consensus 76 ~~ 77 (91)
+.
T Consensus 206 ~N 207 (310)
T 4glp_A 206 NT 207 (310)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.61 E-value=2.2e-05 Score=53.41 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=39.1
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
|++.. + +++..+++|++|++++|.+.. ++.++.+++|+.|++..+...+.... . ...+++|++|++.+.
T Consensus 253 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~L~~n~l~~~~~~-~-l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 253 NQISD-I-NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME-V-IGGLTNLTTLFLSQN 321 (347)
T ss_dssp SCCCC-C-GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCGGGHH-H-HHTCTTCSEEECCSS
T ss_pred CccCC-C-hhHhcCCCcCEEEccCCccCC--ChhhcCCCCCCEEECcCCcCCCcChh-H-hhccccCCEEEccCC
Confidence 44443 3 345667777777777776643 45677777777777765443321110 0 123566666666543
No 107
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.59 E-value=5e-05 Score=56.02 Aligned_cols=12 Identities=17% Similarity=0.063 Sum_probs=6.3
Q ss_pred CCccCcEEeccC
Q 036743 65 GFLQLKILRPKS 76 (91)
Q Consensus 65 ~Fp~Lk~L~l~~ 76 (91)
.+++|++|.+.+
T Consensus 143 ~l~~L~~L~L~~ 154 (680)
T 1ziw_A 143 QLENLQELLLSN 154 (680)
T ss_dssp CCTTCCEEECCS
T ss_pred ccccCCEEEccC
Confidence 355555555543
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.58 E-value=8.6e-05 Score=50.10 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=22.2
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+..+++|++|++++|.+.. ++.++.+++|+.|++..+
T Consensus 108 l~~l~~L~~L~L~~n~i~~--~~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNN 144 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSS
T ss_pred hccCCCCCEEECCCCcCCC--ChhhcCCCCCCEEEccCC
Confidence 5566666666666666543 355666666666666443
No 109
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.56 E-value=7.1e-05 Score=50.84 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=39.6
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccc-cCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPAL-EKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKS 76 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L-~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~ 76 (91)
+|++.+..|.++..+++|++|+|++|.+...+...+ +.+++|++|+|..+...+. . . ...+++|++|++.+
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~-~-~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--K-G-QVVFAKLKTLDLSS 200 (317)
T ss_dssp SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--E-C-CCCCTTCCEEECCS
T ss_pred CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--c-c-ccccccCCEEECCC
Confidence 355555445566667777777777777665444444 3577777777754433221 1 1 12355555555544
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.56 E-value=0.00011 Score=49.99 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=18.9
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
+..+++|++|++++|.+. .++.++++++|++|++..
T Consensus 84 ~~~l~~L~~L~L~~n~i~--~~~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNE 119 (347)
T ss_dssp GTTCTTCCEEECCSSCCC--CCGGGTTCTTCSEEECTT
T ss_pred hhcCCcCCEEEccCCccc--CchHHcCCCcCCEEECcC
Confidence 445555555555555443 234555555555555543
No 111
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.55 E-value=0.00013 Score=53.76 Aligned_cols=10 Identities=40% Similarity=0.255 Sum_probs=5.1
Q ss_pred ccCcEEeccC
Q 036743 67 LQLKILRPKS 76 (91)
Q Consensus 67 p~Lk~L~l~~ 76 (91)
++|++|.+.+
T Consensus 171 ~~L~~L~L~~ 180 (680)
T 1ziw_A 171 SSLKKLELSS 180 (680)
T ss_dssp CEESEEECTT
T ss_pred ccccEEECCC
Confidence 4555555543
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.52 E-value=0.00011 Score=49.80 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=15.8
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
+..+++|++|+++.|.+. .++.++++++|+.|++.
T Consensus 147 l~~l~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVS--DLTPLANLSKLTTLKAD 181 (308)
T ss_dssp GGGCTTCCEEECCSSCCC--CCGGGTTCTTCCEEECC
T ss_pred ccCCCCccEEEccCCcCC--CChhhcCCCCCCEEECC
Confidence 334445555555554433 12234444444444443
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.51 E-value=8.4e-06 Score=56.40 Aligned_cols=76 Identities=16% Similarity=0.016 Sum_probs=51.7
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCc----ccccCCC-CCceeEEecccccCcEE-EeeC--CCCCccCcEEe
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPL----PALEKLP-HLRVLKLKQSLYSGRKL-ACAG--FGGFLQLKILR 73 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l----~~L~~Lp-~L~~L~L~~~~~~~~~l-~~~~--~~~Fp~Lk~L~ 73 (91)
.|++++.+|..+...++|++|+|++|.+...+. ..++++| +|+.|+|..+...+... .+.. ...+++|++|.
T Consensus 7 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 7 LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred cccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 467888888888888889999999998887776 6788888 89999997655433211 0110 01136666666
Q ss_pred ccCC
Q 036743 74 PKSM 77 (91)
Q Consensus 74 l~~~ 77 (91)
+.+.
T Consensus 87 Ls~n 90 (362)
T 3goz_A 87 LSGN 90 (362)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 6543
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.50 E-value=0.0002 Score=51.40 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=25.4
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
|++.+ +| .+..+++|++|+|+.|.+..- + ++.+++|++|++..+..
T Consensus 52 n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~--~-~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 52 SSITD-MT-GIEKLTGLTKLICTSNNITTL--D-LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp SCCCC-CT-TGGGCTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCC
T ss_pred CCccc-Ch-hhcccCCCCEEEccCCcCCeE--c-cccCCCCCEEECcCCCC
Confidence 44444 44 355566666666666665442 2 55666666666654433
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.49 E-value=2.8e-06 Score=54.22 Aligned_cols=12 Identities=17% Similarity=0.027 Sum_probs=7.4
Q ss_pred CCccCcEEeccC
Q 036743 65 GFLQLKILRPKS 76 (91)
Q Consensus 65 ~Fp~Lk~L~l~~ 76 (91)
.+++|++|.+.+
T Consensus 138 ~l~~L~~L~l~~ 149 (198)
T 1ds9_A 138 ALDKLEDLLLAG 149 (198)
T ss_dssp TTTTCSEEEECS
T ss_pred cCCCCCEEEecC
Confidence 466666666654
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.47 E-value=0.00023 Score=47.43 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=32.1
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
|++.. +| .+..+++|++|+|++|.+.. ++.++++++|++|++..+..
T Consensus 51 n~i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 51 SNIQS-LA-GMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRL 97 (263)
T ss_dssp SCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGGGTTCSSCCEEECCSSCC
T ss_pred CCccc-ch-HHhhCCCCCEEECCCCccCC--ChhhccCCCCCEEECCCCcc
Confidence 44443 55 56677888888888887653 44488888888888865543
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.46 E-value=0.00016 Score=53.93 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=16.0
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
+..+++|++|+|+.|.+.. ++.++.|++|+.|.|.
T Consensus 105 l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLG 139 (605)
T ss_dssp STTCTTCCEEECTTSCCCC--CGGGGGCTTCSEEECC
T ss_pred hccCCCCCEEEecCCCCCC--CccccCCCccCEEECC
Confidence 3444444555554444332 3344445555555443
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.45 E-value=3.1e-05 Score=58.67 Aligned_cols=70 Identities=24% Similarity=0.304 Sum_probs=48.6
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCc-ccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCC
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPL-PALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l-~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~ 77 (91)
.|++. .+|..+..+++|++|+|+.|.+. .+ +.+++|++|++|+|..+... .+.-. .+.+++|++|.|.+.
T Consensus 233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~-~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 233 NLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT--SLPAE-LGSCFQLKYFYFFDN 303 (727)
T ss_dssp TSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS--SCCSS-GGGGTTCSEEECCSS
T ss_pred CCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC--ccChh-hcCCCCCCEEECCCC
Confidence 35555 47777778888888888888876 33 35888888888888766544 22211 345788888888654
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.41 E-value=0.00013 Score=54.38 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=18.4
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
+..+++|++|+|+.|.+. .++.++.+++|+.|.|..
T Consensus 83 l~~l~~L~~L~Ls~N~l~--~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp GGGCTTCCEEECCSSCCC--CCTTSTTCTTCCEEECTT
T ss_pred hccCCCCCEEECcCCCCC--CChhhccCCCCCEEEecC
Confidence 444555555555555443 234555555555555543
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.41 E-value=0.00019 Score=49.44 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=32.7
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
++++. +|..+ .+++++|+|+.|+++.-+-..+++|++|++|+|..+.
T Consensus 19 ~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 19 SKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 44553 77655 4678888888888765444457888888888886543
No 121
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.37 E-value=3.1e-05 Score=49.88 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=50.2
Q ss_pred cCCCCCccEEEEeccc-CCCCCcccccCC----CCCceeEEeccc-ccCcEEEeeCCCCCccCcEEeccCCCCcc
Q 036743 13 YKFPPSLTQLSLTNAE-LKYDPLPALEKL----PHLRVLKLKQSL-YSGRKLACAGFGGFLQLKILRPKSMFWVE 81 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~-l~~~~l~~L~~L----p~L~~L~L~~~~-~~~~~l~~~~~~~Fp~Lk~L~l~~~~~l~ 81 (91)
+..+++|++|+|++|. ++.+.+..|+++ ++|++|+|..+. .++..+.. -..+++|+.|.+.+++.+.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA--LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH--GGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH--HhcCCCCCEEECCCCCCCC
Confidence 3578999999999995 666678889987 589999997654 22222221 1248999999999998664
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.36 E-value=0.00027 Score=50.63 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=19.2
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+..+++|++|++++|++.. +| ++.+++|++|++..+
T Consensus 208 l~~l~~L~~L~Ls~N~l~~--ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTE--ID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC--CC-CTTCTTCSEEECCSS
T ss_pred cccCCCCCEEECcCCcccc--cC-ccccCCCCEEEeeCC
Confidence 4445555666665555543 32 555555555555443
No 123
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.33 E-value=0.00015 Score=50.95 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=40.7
Q ss_pred CCCccEEEEecccCCCCCccccc--CCCCCceeEEec--ccccCcE-E-----EeeCCCCCccCcEEeccCC
Q 036743 16 PPSLTQLSLTNAELKYDPLPALE--KLPHLRVLKLKQ--SLYSGRK-L-----ACAGFGGFLQLKILRPKSM 77 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~L~--~Lp~L~~L~L~~--~~~~~~~-l-----~~~~~~~Fp~Lk~L~l~~~ 77 (91)
+++|++|+|..|.+..+.+..++ ++|+|+.|.|.. +.+.+.. + .+. .+.||+|+.|.+.++
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~-~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS-KDRFPNLKWLGIVDA 262 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC-TTTCTTCCEEEEESC
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh-cCCCCCcCEEeCCCC
Confidence 56777777777777666666665 799999999853 2222221 1 122 346999999999764
No 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.29 E-value=0.0002 Score=51.69 Aligned_cols=49 Identities=29% Similarity=0.264 Sum_probs=28.6
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|.+++..|..+..+++|++|+|++|.+.. .+.++.+++|++|+|..+.
T Consensus 43 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 43 GNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY 91 (487)
T ss_dssp SSCCCCCCGGGGTTCTTCCEEECTTSCCEE--EEECTTCTTCCEEECCSSE
T ss_pred CCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--CcccccCCCCCEEEecCCc
Confidence 355555445566666666666666666532 2236666666666665443
No 125
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.27 E-value=0.00029 Score=47.77 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=24.7
Q ss_pred ceecccccCcccC-CCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 2 DVELSQMVLSKYK-FPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 2 ~~~~~~~lP~wi~-~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
+|++.+..|.++. .+++|++|+|++|.+.. ++....+++|+.|+|..+
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSN 201 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EECCCCCTTCCEEECCSS
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCcc--cccccccccCCEEECCCC
Confidence 3455554444442 45666666666665432 234444566666655433
No 126
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=4.2e-05 Score=52.08 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCCccEEEEecccCCCC-Ccc-cccCCCCCceeEEeccc
Q 036743 16 PPSLTQLSLTNAELKYD-PLP-ALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~-~l~-~L~~Lp~L~~L~L~~~~ 52 (91)
+++|+.|+|++|++..- .++ .++++|+|+.|+|..+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 44555555555554331 122 23345555555554333
No 127
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.23 E-value=0.00034 Score=49.71 Aligned_cols=12 Identities=42% Similarity=0.520 Sum_probs=4.8
Q ss_pred ccCCCCCceeEE
Q 036743 37 LEKLPHLRVLKL 48 (91)
Q Consensus 37 L~~Lp~L~~L~L 48 (91)
++++++|++|++
T Consensus 108 ~~~l~~L~~L~L 119 (466)
T 1o6v_A 108 LANLTNLTGLTL 119 (466)
T ss_dssp GTTCTTCCEEEC
T ss_pred hcCCCCCCEEEC
Confidence 333444444444
No 128
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.18 E-value=0.00046 Score=49.06 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=16.4
Q ss_pred cCCCCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 13 YKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 13 i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
+..+++|++|+|++|.+.. ++.++.+++|+.|++.
T Consensus 305 ~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339 (466)
T ss_dssp GGGCTTCSEEECCSSCCSC--CGGGGGCTTCCEEECC
T ss_pred hcCCCCCCEEECcCCcCCC--chhhccCccCCEeECC
Confidence 3445555555555554432 2224445555555554
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.97 E-value=0.00066 Score=46.66 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=38.8
Q ss_pred eecccccCcccCCCCCccEEEEec-ccCCCCCcccccCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCC
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTN-AELKYDPLPALEKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMF 78 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~-~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~ 78 (91)
|++.. +|..+....+|++|.+.. +.+..-+-..++.+++|+.|+|..+.... +. .++|..|+.|...++.
T Consensus 164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~----lp-~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 164 NGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS----LP-SYGLENLKKLRARSTY 234 (350)
T ss_dssp SCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC----CC-SSSCTTCCEEECTTCT
T ss_pred ccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc----cC-hhhhccchHhhhccCC
Confidence 45553 666555556677777764 44443333456777888888776544321 12 2345556655554443
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.85 E-value=4.6e-05 Score=57.01 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=27.2
Q ss_pred eecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecc
Q 036743 3 VELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 3 ~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~ 51 (91)
|+|+. +|. .+++|++|+|++|.+..- .+.++++++|+.|+|..+
T Consensus 251 N~L~~-lp~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 251 NRLTS-LPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN 294 (622)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC
T ss_pred CCCCc-CCc---ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC
Confidence 44442 554 456677777777776622 234777777777777654
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.75 E-value=0.0028 Score=45.35 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=16.9
Q ss_pred CccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 18 SLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 18 ~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++|++++|.+.. ++.++++++|+.|++..+.
T Consensus 174 ~L~~L~L~~n~l~~--l~~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSC
T ss_pred cccEEECcCCcCCc--CccccCCCCCCEEECCCCc
Confidence 34444444443332 3456666777777665443
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.73 E-value=0.0029 Score=45.24 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 17 PSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
++|++|++++|.+.. +|.++++++|++|++..+.
T Consensus 131 ~~L~~L~L~~n~l~~--lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCC--CcccCCCCCCCEEECCCCc
Confidence 467777777776653 5567777777777775543
No 133
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.71 E-value=0.0028 Score=47.08 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=4.9
Q ss_pred CCCCCceeEEe
Q 036743 39 KLPHLRVLKLK 49 (91)
Q Consensus 39 ~Lp~L~~L~L~ 49 (91)
.+++|+.|+|.
T Consensus 138 ~l~~L~~L~Ls 148 (571)
T 3cvr_A 138 LPALLEYINAD 148 (571)
T ss_dssp CCTTCCEEECC
T ss_pred cCccccEEeCC
Confidence 34444444443
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.70 E-value=0.0001 Score=53.31 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=28.9
Q ss_pred ccCcccCCCCCccEEEEecccCCCCCc-ccccCCCCCceeEEe
Q 036743 8 MVLSKYKFPPSLTQLSLTNAELKYDPL-PALEKLPHLRVLKLK 49 (91)
Q Consensus 8 ~lP~wi~~L~~L~~L~L~~~~l~~~~l-~~L~~Lp~L~~L~L~ 49 (91)
.+|.++..+++|++|+|++|.+....+ ..++++|+|+.|+|.
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 356666667788888888877654444 336778888888875
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.68 E-value=9.3e-05 Score=51.31 Aligned_cols=39 Identities=21% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCCCCccEEEEecccCCCCCc----ccccCCCCCceeEEeccc
Q 036743 14 KFPPSLTQLSLTNAELKYDPL----PALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 14 ~~L~~L~~L~L~~~~l~~~~l----~~L~~Lp~L~~L~L~~~~ 52 (91)
..+++|++|+|++|.+..... ..++++++|++|.|..+.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 456777777777776655322 245667777777775443
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.61 E-value=0.00024 Score=51.32 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=36.5
Q ss_pred CCCccEEEEecccCCCCCcccc-cCCCCCceeEEecccccCcEEEeeCCCCCccCcEEeccCCC
Q 036743 16 PPSLTQLSLTNAELKYDPLPAL-EKLPHLRVLKLKQSLYSGRKLACAGFGGFLQLKILRPKSMF 78 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~L-~~Lp~L~~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~~~~ 78 (91)
+++|++|+|+.|.+....+..+ ..+|+|+.|+|..+...+..+..- ...+++|++|++.+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN-ASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT-GGGGGGSSEEEEESSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH-HHhCCCCCEEeeeCCC
Confidence 5667777777776654445444 557777777776555422221111 2347778888776654
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.56 E-value=0.00036 Score=50.41 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=19.3
Q ss_pred CCCccEEEEecccCCCCCccc-ccCCCCCceeEEeccc
Q 036743 16 PPSLTQLSLTNAELKYDPLPA-LEKLPHLRVLKLKQSL 52 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~-L~~Lp~L~~L~L~~~~ 52 (91)
+++|++|+|+.|.+....++. ++.+++|++|+|+.+.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 555666666655544333332 3455666666665443
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.54 E-value=0.0042 Score=46.12 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=26.3
Q ss_pred ceecccccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEeccc
Q 036743 2 DVELSQMVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSL 52 (91)
Q Consensus 2 ~~~~~~~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~ 52 (91)
+|++++ +|..+. ++|++|+|++|.+. .+| +.+++|++|+|..+.
T Consensus 68 ~n~L~~-lp~~l~--~~L~~L~Ls~N~l~--~ip--~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 68 RLNLSS-LPDNLP--PQITVLEITQNALI--SLP--ELPASLEYLDACDNR 111 (571)
T ss_dssp SSCCSC-CCSCCC--TTCSEEECCSSCCS--CCC--CCCTTCCEEECCSSC
T ss_pred CCCCCc-cCHhHc--CCCCEEECcCCCCc--ccc--cccCCCCEEEccCCC
Confidence 355555 666552 56777777777665 344 556666666665443
No 139
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.46 E-value=0.0025 Score=47.65 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=14.3
Q ss_pred CCccEEEEecccCCCCCcccccCCCCCceeEEec
Q 036743 17 PSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQ 50 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~ 50 (91)
++|++|+|++|.+.. ++ ..+++|+.|+|..
T Consensus 221 ~~L~~L~Ls~N~L~~--lp--~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 221 SGLKELIVSGNRLTS--LP--VLPSELKELMVSG 250 (622)
T ss_dssp TTCCEEECCSSCCSC--CC--CCCTTCCEEECCS
T ss_pred CCCCEEEccCCccCc--CC--CCCCcCcEEECCC
Confidence 445555555555432 22 3345555555543
No 140
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.45 E-value=3.9e-05 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=12.3
Q ss_pred cCcccCCCCCccEEEEecccCC
Q 036743 9 VLSKYKFPPSLTQLSLTNAELK 30 (91)
Q Consensus 9 lP~wi~~L~~L~~L~L~~~~l~ 30 (91)
+|.++..+++|++|+|++|.+.
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHhCCCCCEEECcCCCCC
Confidence 4555555556666666655543
No 141
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.40 E-value=0.00016 Score=49.94 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=26.8
Q ss_pred cccCCCC-CccEEEEecccCCCCCcccccCC-----CCCceeEEecccc
Q 036743 11 SKYKFPP-SLTQLSLTNAELKYDPLPALEKL-----PHLRVLKLKQSLY 53 (91)
Q Consensus 11 ~wi~~L~-~L~~L~L~~~~l~~~~l~~L~~L-----p~L~~L~L~~~~~ 53 (91)
..+..++ +|++|+|++|.+.......++++ ++|++|+|..+..
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 3344555 67777777777666555555554 7777777755443
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.30 E-value=0.0014 Score=44.57 Aligned_cols=74 Identities=24% Similarity=0.180 Sum_probs=50.9
Q ss_pred ceeccc--ccCcccCCCCCccEEEEecccCCCC-CcccccCCCCCceeEEecccccCcE----EEe-eCCCCCccCcEEe
Q 036743 2 DVELSQ--MVLSKYKFPPSLTQLSLTNAELKYD-PLPALEKLPHLRVLKLKQSLYSGRK----LAC-AGFGGFLQLKILR 73 (91)
Q Consensus 2 ~~~~~~--~lP~wi~~L~~L~~L~L~~~~l~~~-~l~~L~~Lp~L~~L~L~~~~~~~~~----l~~-~~~~~Fp~Lk~L~ 73 (91)
+|+|++ .+|..+..+++|+.|+|+.|++... ++..+..+ +|+.|.|..+...+.. -+. .....||+|+.|+
T Consensus 179 ~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 179 NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 577776 5667777899999999999998653 45555555 9999999877654410 000 0023599999987
Q ss_pred ccC
Q 036743 74 PKS 76 (91)
Q Consensus 74 l~~ 76 (91)
-..
T Consensus 258 g~~ 260 (267)
T 3rw6_A 258 GHE 260 (267)
T ss_dssp SCB
T ss_pred CcC
Confidence 543
No 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.14 E-value=7.1e-05 Score=52.58 Aligned_cols=42 Identities=26% Similarity=0.182 Sum_probs=19.5
Q ss_pred cCcccCCCCCccEEEEecccCCCCCcccccC-----CCCCceeEEec
Q 036743 9 VLSKYKFPPSLTQLSLTNAELKYDPLPALEK-----LPHLRVLKLKQ 50 (91)
Q Consensus 9 lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~-----Lp~L~~L~L~~ 50 (91)
+|.++..+++|++|+|++|.+.......+++ .++|+.|+|..
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 3444444455555555555544333333332 44555555543
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.04 E-value=0.00057 Score=49.34 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=19.1
Q ss_pred CCCccEEEEecccCCCCCccccc-CCCCCceeEEe
Q 036743 16 PPSLTQLSLTNAELKYDPLPALE-KLPHLRVLKLK 49 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~L~-~Lp~L~~L~L~ 49 (91)
+++|++|+|+++.+....+..++ .+|+|+.|+|.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 55666666666655444444444 45666666664
No 145
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.69 E-value=0.012 Score=35.44 Aligned_cols=44 Identities=30% Similarity=0.418 Sum_probs=34.9
Q ss_pred ccCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccc
Q 036743 8 MVLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLY 53 (91)
Q Consensus 8 ~lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~ 53 (91)
.+|..+ ..+|++|+|++|++..-+-..+..+++|+.|.|..+..
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 366532 45799999999999877767789999999999976643
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.19 E-value=0.00066 Score=47.62 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=18.3
Q ss_pred CccEEEEecccCCCCC----cccccCCCCCceeEEecc
Q 036743 18 SLTQLSLTNAELKYDP----LPALEKLPHLRVLKLKQS 51 (91)
Q Consensus 18 ~L~~L~L~~~~l~~~~----l~~L~~Lp~L~~L~L~~~ 51 (91)
+|++|+|++|.+.... ...++++++|++|+|..+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 4666666666554322 234556666666666443
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.96 E-value=0.0048 Score=43.27 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=34.1
Q ss_pred cCcccCCCCCccEEEEecccCCCCCcccccCCCCCceeEEecccccCcEEE-eeCCCCCccCcEEecc
Q 036743 9 VLSKYKFPPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLKQSLYSGRKLA-CAGFGGFLQLKILRPK 75 (91)
Q Consensus 9 lP~wi~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~~l~-~~~~~~Fp~Lk~L~l~ 75 (91)
++.++..+++|++|+|+++. ...++.+ .+|+|+.|+|..+....+.+. +. ...+|+|+.|.|.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~--~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~-~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTN--NLSIGKK-PRPNLKSLEIISGGLPDSVVEDIL-GSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCB--TCBCCSC-BCTTCSEEEEECSBCCHHHHHHHH-HSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCC--Cceeccc-cCCCCcEEEEecCCCChHHHHHHH-HccCCCCcEEEEe
Confidence 33444456777777777652 1123333 377777777754332221111 11 2358899998874
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.66 E-value=0.0017 Score=45.47 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=17.6
Q ss_pred CCCccEEEEecccCCCCCccc----ccCCCCCceeEEecc
Q 036743 16 PPSLTQLSLTNAELKYDPLPA----LEKLPHLRVLKLKQS 51 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~----L~~Lp~L~~L~L~~~ 51 (91)
.++|++|+|++|.+....... |...++|++|+|..+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 345556666655554322222 244555555555433
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.21 E-value=0.23 Score=33.44 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=17.8
Q ss_pred CCCccEEEEecccCCCCCcccccCCCCCceeEEe
Q 036743 16 PPSLTQLSLTNAELKYDPLPALEKLPHLRVLKLK 49 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L~ 49 (91)
+++|++|+|..+.+..-+-..+..+++|+.+.|.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4556666666554443333345555566655553
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=87.15 E-value=0.0074 Score=42.24 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCccEEEEecccCCCCCccccc-CCCCCceeEEecccccCcEEE-ee-C-CCCCccCcEEeccCC
Q 036743 17 PSLTQLSLTNAELKYDPLPALE-KLPHLRVLKLKQSLYSGRKLA-CA-G-FGGFLQLKILRPKSM 77 (91)
Q Consensus 17 ~~L~~L~L~~~~l~~~~l~~L~-~Lp~L~~L~L~~~~~~~~~l~-~~-~-~~~Fp~Lk~L~l~~~ 77 (91)
.+|++|+|++|.+..+.+..+. .+++|+.|+|..+........ +. . ....++|++|.+.+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n 165 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence 5788888888877655555554 367788888865543321110 10 0 024578889888775
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=86.48 E-value=1.5 Score=29.37 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=42.9
Q ss_pred eecccccCcc-cCCCCCccEEEEecccCCCCCcccccCCCCCc-eeEEecccccCcEEEeeCCCCCccCcEEecc
Q 036743 3 VELSQMVLSK-YKFPPSLTQLSLTNAELKYDPLPALEKLPHLR-VLKLKQSLYSGRKLACAGFGGFLQLKILRPK 75 (91)
Q Consensus 3 ~~~~~~lP~w-i~~L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~-~L~L~~~~~~~~~l~~~~~~~Fp~Lk~L~l~ 75 (91)
|++. .+|.. +..+.+|++|+|..+ +..-+-..+..+++|+ .+.+.. . -..+.-+...+.++|+.+.+.
T Consensus 236 n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~--l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 236 TNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S--VTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp BCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T--CCEECTTTTTTCTTEEEEEEC
T ss_pred CCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c--ceEEchhhhhCCccCCEEEeC
Confidence 3444 36665 457899999999887 5543444688999999 999953 1 112211112345677777774
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=74.74 E-value=0.26 Score=30.78 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=41.4
Q ss_pred CCCCCccEEEEecccCCCCC----cccccCCCCCceeEE--ecccccCcEE-Eee-CCCCCccCcEEeccCC
Q 036743 14 KFPPSLTQLSLTNAELKYDP----LPALEKLPHLRVLKL--KQSLYSGRKL-ACA-GFGGFLQLKILRPKSM 77 (91)
Q Consensus 14 ~~L~~L~~L~L~~~~l~~~~----l~~L~~Lp~L~~L~L--~~~~~~~~~l-~~~-~~~~Fp~Lk~L~l~~~ 77 (91)
...++|++|+|++|.+..+. ...|...++|+.|+| ..+....+.. .+. .-..-++|++|++...
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 34578999999999987643 345777899999999 5444332211 011 0112477999998754
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=73.71 E-value=0.44 Score=29.73 Aligned_cols=9 Identities=33% Similarity=0.043 Sum_probs=5.2
Q ss_pred CccCcEEec
Q 036743 66 FLQLKILRP 74 (91)
Q Consensus 66 Fp~Lk~L~l 74 (91)
-++|++|++
T Consensus 120 n~~L~~L~L 128 (185)
T 1io0_A 120 NTSLIELRI 128 (185)
T ss_dssp CSSCCEEEC
T ss_pred CCCceEEEe
Confidence 345666666
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=72.88 E-value=1.7 Score=25.70 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=24.2
Q ss_pred ceecccccCcc-cCCCCCccEEEEecccCCCCC
Q 036743 2 DVELSQMVLSK-YKFPPSLTQLSLTNAELKYDP 33 (91)
Q Consensus 2 ~~~~~~~lP~w-i~~L~~L~~L~L~~~~l~~~~ 33 (91)
+|+|+. +|.. +..+++|++|+|.+|-+.|+.
T Consensus 40 ~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 40 GNNLTA-LPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TSCCSS-CCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CCcCCc-cChhhhhhccccCEEEecCCCeeccC
Confidence 577775 6654 467899999999999888763
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=71.02 E-value=14 Score=25.69 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=18.0
Q ss_pred CCCCccEEEEecccCCCCC---c--ccccCCCCCceeEE
Q 036743 15 FPPSLTQLSLTNAELKYDP---L--PALEKLPHLRVLKL 48 (91)
Q Consensus 15 ~L~~L~~L~L~~~~l~~~~---l--~~L~~Lp~L~~L~L 48 (91)
.+++|+.+++..+....+. + ..+..+++|+.+.|
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 4666777777665433111 1 23445666666655
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=50.63 E-value=30 Score=23.25 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=13.7
Q ss_pred CCCccEEEEecccCCCCCcccccCCCCCceeEE
Q 036743 16 PPSLTQLSLTNAELKYDPLPALEKLPHLRVLKL 48 (91)
Q Consensus 16 L~~L~~L~L~~~~l~~~~l~~L~~Lp~L~~L~L 48 (91)
..+|+++.+..+.++.-.-.......+|+.+.|
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 344555555443322111123344455555554
Done!