BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036744
         (114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CQF|A Chain A, Crystal Structure Of Anthrolysin O (Alo)
 pdb|3CQF|B Chain B, Crystal Structure Of Anthrolysin O (Alo)
          Length = 489

 Score = 29.6 bits (65), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 57  VAVTCTGLIWSRYSTVITPKNWNLF-AVNLAMAGTGLY 93
           VA  CTGL W  + T+I  +N  L   + +++ GT LY
Sbjct: 445 VARECTGLAWEWWRTIINEQNVPLTNEIKVSIGGTTLY 482


>pdb|3MD2|A Chain A, Crystal Structure Of The Matrix Protein 1 From Influenza A
           V (ACALIFORNIA042009 (H1N1))
 pdb|3MD2|B Chain B, Crystal Structure Of The Matrix Protein 1 From Influenza A
           V (ACALIFORNIA042009 (H1N1))
 pdb|3MD2|C Chain C, Crystal Structure Of The Matrix Protein 1 From Influenza A
           V (ACALIFORNIA042009 (H1N1))
 pdb|3MD2|D Chain D, Crystal Structure Of The Matrix Protein 1 From Influenza A
           V (ACALIFORNIA042009 (H1N1))
          Length = 157

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 51  LSYPQQVAVTCTGLIWSRYSTVITPKNWNL 80
           LSY      +C GLI++R  TV T   + L
Sbjct: 116 LSYSTGALASCMGLIYNRMGTVTTEAAFGL 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.131    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,931
Number of Sequences: 62578
Number of extensions: 111750
Number of successful extensions: 192
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)