Query 036744
Match_columns 114
No_of_seqs 104 out of 423
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_B Ribosomal protein S2; s 22.7 25 0.00085 27.1 0.8 35 20-54 156-199 (231)
2 3r8n_B 30S ribosomal protein S 20.0 31 0.0011 26.3 0.9 33 22-54 150-191 (218)
3 2vqe_B 30S ribosomal protein S 18.6 32 0.0011 27.0 0.6 34 21-54 158-200 (256)
4 1vi6_A 30S ribosomal protein S 16.3 39 0.0013 25.7 0.6 24 31-54 134-157 (208)
5 2xzm_B RPS0E; ribosome, transl 14.8 47 0.0016 25.8 0.8 23 32-54 134-156 (241)
6 3bch_A 40S ribosomal protein S 12.7 55 0.0019 25.7 0.6 23 32-54 171-193 (253)
7 3j20_B 30S ribosomal protein S 11.7 62 0.0021 24.4 0.6 22 33-54 132-153 (202)
8 2izx_A CAMP-dependent protein 11.4 1.1E+02 0.0037 16.8 1.4 26 66-91 14-39 (41)
9 2ju0_B Phosphatidylinositol 4- 9.7 2.5E+02 0.0084 17.1 2.7 29 41-69 22-50 (52)
10 3u5c_A 40S ribosomal protein S 9.7 84 0.0029 24.6 0.7 23 32-54 137-159 (252)
No 1
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=22.66 E-value=25 Score=27.09 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=28.9
Q ss_pred CCceeeeeccc---------ccccchhhhcccccCCCCcccChh
Q 036744 20 HCIVAVHFWAP---------TFKWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 20 ~yp~T~hFWgP---------~~kWgi~iA~l~D~~kppe~IS~~ 54 (114)
.-|.-+..=.| ..|=+||+.||.|.+-||+.|+.+
T Consensus 156 ~~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~ 199 (231)
T 3bbn_B 156 GLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADIS 199 (231)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEE
T ss_pred cCCCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEE
Confidence 34777777777 468999999999999999999764
No 2
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=19.95 E-value=31 Score=26.26 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=26.0
Q ss_pred ceeeeecccc---------cccchhhhcccccCCCCcccChh
Q 036744 22 IVAVHFWAPT---------FKWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 22 p~T~hFWgP~---------~kWgi~iA~l~D~~kppe~IS~~ 54 (114)
|.-+..=.|. .+=+||+.||.|.+-||+.|+.+
T Consensus 150 Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDTn~~p~~Vdy~ 191 (218)
T 3r8n_B 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp CCSCEEEETGGGHHHHHHHHHHTCCCEEECCSSSCCSSCSEE
T ss_pred CCeEEecCcccccHHHHHHHHhCCCEEEEEeCcCCCcccceE
Confidence 6666665663 46789999999999999998764
No 3
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=18.63 E-value=32 Score=26.95 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=27.1
Q ss_pred Cceeeeecccc---------cccchhhhcccccCCCCcccChh
Q 036744 21 CIVAVHFWAPT---------FKWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 21 yp~T~hFWgP~---------~kWgi~iA~l~D~~kppe~IS~~ 54 (114)
-|.-+..-.|. .|=+||+-||.|.+-||+.|+.+
T Consensus 158 ~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~Vdyp 200 (256)
T 2vqe_B 158 LPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYI 200 (256)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEE
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceE
Confidence 36666666664 47799999999999999998754
No 4
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=16.33 E-value=39 Score=25.73 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=20.5
Q ss_pred ccccchhhhcccccCCCCcccChh
Q 036744 31 TFKWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 31 ~~kWgi~iA~l~D~~kppe~IS~~ 54 (114)
..|=+||+-||.|.+-||+.|+.+
T Consensus 134 A~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 134 ATAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEeCCCCCccccCEE
Confidence 347899999999999999998754
No 5
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=14.83 E-value=47 Score=25.78 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.1
Q ss_pred cccchhhhcccccCCCCcccChh
Q 036744 32 FKWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 32 ~kWgi~iA~l~D~~kppe~IS~~ 54 (114)
.|=+||+-||.|.+-||+.|+..
T Consensus 134 ~~l~IPvIalvDTn~~p~~VDy~ 156 (241)
T 2xzm_B 134 SYVNIPVIALCDSDSPLAYVDVV 156 (241)
T ss_dssp TTTTCCEEECCCSSSCCTTCCEE
T ss_pred HHhCCCEEEEecCCCCcccccEE
Confidence 47899999999999999988753
No 6
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=12.73 E-value=55 Score=25.71 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=20.1
Q ss_pred cccchhhhcccccCCCCcccChh
Q 036744 32 FKWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 32 ~kWgi~iA~l~D~~kppe~IS~~ 54 (114)
.|=+||+-||.|.+-||+.|+..
T Consensus 171 ~~lgIPvIalvDTn~dp~~VDy~ 193 (253)
T 3bch_A 171 SYVNLPTIALCNTDSPLRYVDIA 193 (253)
T ss_dssp HHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHhCCCEEEEEcCCCCcccCceE
Confidence 47899999999999999988653
No 7
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=11.74 E-value=62 Score=24.44 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.0
Q ss_pred ccchhhhcccccCCCCcccChh
Q 036744 33 KWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 33 kWgi~iA~l~D~~kppe~IS~~ 54 (114)
|=+||+-||.|.+-||+.|+..
T Consensus 132 ~l~IP~Ial~DTn~~p~~Vd~~ 153 (202)
T 3j20_B 132 EIGIPIVALVDTENLLSYVDLA 153 (202)
T ss_dssp HHTCCEEEEECTTCCCTTCCEE
T ss_pred HcCCCEEEEEcCCCCccccCEE
Confidence 5589999999999999988754
No 8
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=11.43 E-value=1.1e+02 Score=16.77 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=20.9
Q ss_pred hhhheeeeeccchhHHHHHHHHHhHh
Q 036744 66 WSRYSTVITPKNWNLFAVNLAMAGTG 91 (114)
Q Consensus 66 ~~Rys~~I~P~Ny~L~ach~~~~~~q 91 (114)
++|-.++-+|.|.+-|+.+.|....+
T Consensus 14 ~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 14 YTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 56667788999999999998886554
No 9
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=9.66 E-value=2.5e+02 Score=17.06 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=22.5
Q ss_pred ccccCCCCcccChhhhHHHHHHhhhhhhh
Q 036744 41 IADFSKPPEKLSYPQQVAVTCTGLIWSRY 69 (114)
Q Consensus 41 l~D~~kppe~IS~~mt~aL~~~g~i~~Ry 69 (114)
..|.....++|..+-.-||++.|++.+=+
T Consensus 22 ~~~~~~~~~k~~ENv~PalVL~s~v~sS~ 50 (52)
T 2ju0_B 22 TSSGSDKNVKIHENVAPALVLSSMIMSAI 50 (52)
T ss_dssp SSCCCCTTCCSSCSHHHHHHHHHHHHHTC
T ss_pred CCccccchHHhhccccHHHHHHHHHHHHh
Confidence 34554556799999999999999988744
No 10
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=9.66 E-value=84 Score=24.65 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.5
Q ss_pred cccchhhhcccccCCCCcccChh
Q 036744 32 FKWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 32 ~kWgi~iA~l~D~~kppe~IS~~ 54 (114)
.|=+||+.||.|.+-||+.|+..
T Consensus 137 ~~l~IP~Ial~DTn~~p~~VD~~ 159 (252)
T 3u5c_A 137 SYVNIPVIALTDLDSPSEFVDVA 159 (252)
T ss_dssp HTTTCCEEEEECTTCCCTTCSSE
T ss_pred HHcCCCEEEEEcCCCCcccCCEE
Confidence 35689999999999999988754
Done!