Query 036744
Match_columns 114
No_of_seqs 104 out of 423
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 08:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036744.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036744hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9b1 c.23.15.1 (B:8-225) Ri 20.6 13 0.00092 26.3 0.6 33 22-54 150-191 (218)
2 d2uubb1 c.23.15.1 (B:7-240) Ri 15.4 19 0.0014 25.8 0.4 37 18-54 149-194 (234)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 9.4 59 0.0043 16.7 1.2 17 55-71 6-22 (32)
4 d1v54j_ f.23.4.1 (J:) Mitochon 9.1 22 0.0016 20.9 -0.8 24 48-71 27-50 (58)
5 d1vi6a_ c.23.15.1 (A:) Ribosom 8.4 46 0.0034 23.0 0.6 21 33-53 131-151 (193)
6 d2oqoa1 d.2.1.10 (A:57-243) Pe 7.1 81 0.0059 21.6 1.4 34 27-61 109-142 (187)
7 d2fmpa2 a.60.12.1 (A:92-148) D 7.1 52 0.0038 18.7 0.3 23 40-62 30-52 (57)
8 d2hq7a1 b.45.1.1 (A:2-142) Hyp 5.4 66 0.0048 19.9 0.1 41 3-51 54-94 (141)
9 d1v95a_ c.51.1.1 (A:) Nuclear 4.9 57 0.0042 21.8 -0.5 40 42-83 38-77 (130)
10 d2fhea1 a.45.1.1 (A:81-216) Cl 4.9 1.1E+02 0.0082 18.7 1.0 12 25-36 120-131 (136)
No 1
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=20.62 E-value=13 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=27.3
Q ss_pred ceeeeeccccc---------ccchhhhcccccCCCCcccChh
Q 036744 22 IVAVHFWAPTF---------KWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 22 p~T~hFWgP~~---------kWgi~iA~l~D~~kppe~IS~~ 54 (114)
|.-++.-.|.- +=+||+-||.|.+-+|+.|+.+
T Consensus 150 Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~dp~~idyp 191 (218)
T d2gy9b1 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp CCEEEESCTTTTHHHHHHHHHTTCCEEECCCSSSCGGGCTEE
T ss_pred CceeeeccccccHHHHHHHHHcCCCEEEEeeCCCCCccCcee
Confidence 66777776654 6789999999999999999865
No 2
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=15.39 E-value=19 Score=25.79 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCCCceeeeeccccc---------ccchhhhcccccCCCCcccChh
Q 036744 18 QNHCIVAVHFWAPTF---------KWGISIANIADFSKPPEKLSYP 54 (114)
Q Consensus 18 ~~~yp~T~hFWgP~~---------kWgi~iA~l~D~~kppe~IS~~ 54 (114)
+..-|.-++--.|.- +=+||+-||.|.+-+|+.|+.+
T Consensus 149 m~~~Pd~viv~d~~~~~~Ai~Ea~~l~IPvIaivDTn~dp~~vdyp 194 (234)
T d2uubb1 149 LKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYI 194 (234)
T ss_dssp CSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEE
T ss_pred hhhcceeEEEecCCccHHHHHHHHhhCCCEEEEeecCCCccCCcEE
Confidence 444577777777654 6799999999999999998753
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.40 E-value=59 Score=16.73 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.6
Q ss_pred hhHHHHHHhhhhhhhee
Q 036744 55 QQVAVTCTGLIWSRYST 71 (114)
Q Consensus 55 mt~aL~~~g~i~~Rys~ 71 (114)
-.+|+.-+|+||.-|.+
T Consensus 6 l~aa~lsfglifvgwgl 22 (32)
T d2e74f1 6 LYAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhHH
Confidence 36788899999988764
No 4
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.05 E-value=22 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=19.7
Q ss_pred CcccChhhhHHHHHHhhhhhhhee
Q 036744 48 PEKLSYPQQVAVTCTGLIWSRYST 71 (114)
Q Consensus 48 pe~IS~~mt~aL~~~g~i~~Rys~ 71 (114)
+|.|-..-|.+|++-|.+++=|++
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788899999999999886653
No 5
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.36 E-value=46 Score=23.01 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=18.8
Q ss_pred ccchhhhcccccCCCCcccCh
Q 036744 33 KWGISIANIADFSKPPEKLSY 53 (114)
Q Consensus 33 kWgi~iA~l~D~~kppe~IS~ 53 (114)
|=+||+-||.|.+-+|+.|+.
T Consensus 131 ~l~IPvI~ivDTn~~p~~vdy 151 (193)
T d1vi6a_ 131 AVGIPVVALCDSNNSSADVDL 151 (193)
T ss_dssp HTTCCEEEEECTTCCCTTCSE
T ss_pred HcCCCeeeEeccCCCCcccce
Confidence 668999999999999999865
No 6
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]}
Probab=7.14 E-value=81 Score=21.55 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=28.1
Q ss_pred ecccccccchhhhcccccCCCCcccChhhhHHHHH
Q 036744 27 FWAPTFKWGISIANIADFSKPPEKLSYPQQVAVTC 61 (114)
Q Consensus 27 FWgP~~kWgi~iA~l~D~~kppe~IS~~mt~aL~~ 61 (114)
+||+=. +||--|+-.=+.|+|..+|..|.+.|+.
T Consensus 109 ~~G~~~-yGi~aAa~~yFgk~~~~Lt~~EaA~La~ 142 (187)
T d2oqoa1 109 YLGSGA-YGVEAAAQVYFGKHVWELSLDEAALLAA 142 (187)
T ss_dssp BCSTTC-BSHHHHHHHHHSSCGGGCCHHHHHHHHH
T ss_pred cCCCch-hhHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 356653 7888888888999999999999988865
No 7
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.07 E-value=52 Score=18.69 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=18.5
Q ss_pred cccccCCCCcccChhhhHHHHHH
Q 036744 40 NIADFSKPPEKLSYPQQVAVTCT 62 (114)
Q Consensus 40 ~l~D~~kppe~IS~~mt~aL~~~ 62 (114)
.|.|+++.+++++-.|...|--|
T Consensus 30 ti~dLr~~~~~Lt~~Q~iGLkyy 52 (57)
T d2fmpa2 30 TLEDLRKNEDKLNHHQRIGLKYF 52 (57)
T ss_dssp SHHHHHTCGGGSCHHHHHHHHTH
T ss_pred CHHHHHhhhhhCCHHHHHHHHHH
Confidence 57788888899999998877544
No 8
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]}
Probab=5.40 E-value=66 Score=19.85 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=31.1
Q ss_pred hHHHHHHHcCCCCCCCCCCceeeeecccccccchhhhcccccCCCCccc
Q 036744 3 ASKLQALCVEPPCRSQNHCIVAVHFWAPTFKWGISIANIADFSKPPEKL 51 (114)
Q Consensus 3 ~~~~~~~~~~pag~~~~~yp~T~hFWgP~~kWgi~iA~l~D~~kppe~I 51 (114)
+.+.+.+-++|.- +++||.|-.+-++.|.|-+.+..++|.+
T Consensus 54 s~K~~~l~~np~v--------sl~~~~~~~~~~v~i~G~a~i~~d~~~~ 94 (141)
T d2hq7a1 54 TRMVERLKKNNKI--------CLYFVDDNKFAGLMLVGTIEILHDRASK 94 (141)
T ss_dssp HHHHHHHHHCCEE--------EEEEECSSSSEEEEEEEEEEEECCHHHH
T ss_pred ChHHHHHHhCCcc--------EEEEecCCCceEEEEEEEEEEEcCHHHH
Confidence 3566777777765 8899999888889999988776666543
No 9
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.92 E-value=57 Score=21.83 Aligned_cols=40 Identities=18% Similarity=0.043 Sum_probs=25.8
Q ss_pred cccCCCCcccChhhhHHHHHHhhhhhhheeeeeccchhHHHH
Q 036744 42 ADFSKPPEKLSYPQQVAVTCTGLIWSRYSTVITPKNWNLFAV 83 (114)
Q Consensus 42 ~D~~kppe~IS~~mt~aL~~~g~i~~Rys~~I~P~Ny~L~ac 83 (114)
.||--|.+.++..+..+= -+-==+=||.+|+|+|-.+=+|
T Consensus 38 vd~lf~n~dv~l~~aL~~--vs~~G~~faIlVt~qn~~~~S~ 77 (130)
T d1v95a_ 38 VDLIFLNTEVSLSQALED--VSRGGSPFAIVITQQHQIHRSC 77 (130)
T ss_dssp EEEEECTTSSCHHHHHHH--HHHHTCSEEEEECHHHHHHTEE
T ss_pred EEEEecCCcccHHHHHHH--HHhCCCceEEEEeccchhhcce
Confidence 455566777776665432 2222244799999999977665
No 10
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]}
Probab=4.87 E-value=1.1e+02 Score=18.73 Aligned_cols=12 Identities=8% Similarity=-0.141 Sum_probs=9.7
Q ss_pred eeecccccccch
Q 036744 25 VHFWAPTFKWGI 36 (114)
Q Consensus 25 ~hFWgP~~kWgi 36 (114)
..+.+|.++||-
T Consensus 120 ~P~~~~~a~~~~ 131 (136)
T d2fhea1 120 WPLNGWHAQFGG 131 (136)
T ss_dssp SCSSCTTCSSSC
T ss_pred CCCCCCcCccCC
Confidence 557899999974
Done!