BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036745
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 28.9 bits (63), Expect = 1.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 26 LAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFK---STVTVQ 74
L GV+ Y++ K E IPN++T++ G+I++ GL K T+TVQ
Sbjct: 297 LNGVLS-YSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQ 347
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 28.9 bits (63), Expect = 1.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 26 LAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFK---STVTVQ 74
L GV+ Y++ K E IPN++T++ G+I++ GL K T+TVQ
Sbjct: 148 LNGVLS-YSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQ 198
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 23 IALLAGVIGIYAVFKFHHESGI 44
+ + AG GIYAV K HHE G+
Sbjct: 45 VVIGAGFGGIYAVHKLHHELGL 66
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 23 IALLAGVIGIYAVFKFHHESGI 44
+ + AG GIYAV K HHE G+
Sbjct: 12 VVIGAGFGGIYAVHKLHHELGL 33
>pdb|1MBM|A Chain A, Nsp4 Proteinase From Equine Arteritis Virus
pdb|1MBM|B Chain B, Nsp4 Proteinase From Equine Arteritis Virus
pdb|1MBM|C Chain C, Nsp4 Proteinase From Equine Arteritis Virus
pdb|1MBM|D Chain D, Nsp4 Proteinase From Equine Arteritis Virus
Length = 198
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 20/52 (38%)
Query: 35 VFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLSNQLQNLHF 86
V H G NM TL M+T+ +F VT Q L LHF
Sbjct: 28 VLTASHVVGRANMATLKIGDAMLTLTFKKNGDFAEAVTTQSELPGNWPQLHF 79
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 26.6 bits (57), Expect = 6.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 16 VHWLLHLIALLA-GVIGIYAVFKFHHESGIPNMYTLHSWLGMITI 59
+ +L+ ++ L+A VI V HH S PN +T+ +W+ I I
Sbjct: 305 ISYLMFIMILVAFSVILSVVVLNLHHRS--PNTHTMPNWIRQIFI 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.144 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,270,274
Number of Sequences: 62578
Number of extensions: 153701
Number of successful extensions: 247
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 7
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)