Query 036745
Match_columns 151
No_of_seqs 118 out of 339
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02810 carbon-monoxide oxyge 100.0 4.4E-50 9.6E-55 330.4 14.5 145 1-149 67-218 (231)
2 PLN02680 carbon-monoxide oxyge 100.0 6E-48 1.3E-52 318.3 14.9 145 1-149 67-219 (232)
3 PLN02351 cytochromes b561 fami 100.0 6.8E-47 1.5E-51 313.4 14.0 144 1-150 71-223 (242)
4 cd08764 Cyt_b561_CG1275_like N 100.0 1.9E-46 4.2E-51 306.3 13.6 146 1-150 44-198 (214)
5 KOG1619 Cytochrome b [Energy p 100.0 3.1E-46 6.8E-51 308.6 13.2 146 1-150 75-228 (245)
6 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 4.3E-40 9.4E-45 257.2 10.9 113 1-117 32-151 (153)
7 cd08766 Cyt_b561_ACYB-1_like P 100.0 6E-40 1.3E-44 253.9 9.9 109 1-113 28-139 (144)
8 cd08762 Cyt_b561_CYBASC3 Verte 100.0 1.2E-39 2.7E-44 260.2 11.2 113 1-117 55-174 (179)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 2.4E-38 5.1E-43 244.8 10.3 110 1-114 27-140 (143)
10 cd08554 Cyt_b561 Eukaryotic cy 99.9 3.8E-25 8.2E-30 165.3 9.3 106 1-110 22-131 (131)
11 PF03188 Cytochrom_B561: Eukar 99.9 9.7E-25 2.1E-29 162.9 9.4 105 8-116 29-137 (137)
12 cd08761 Cyt_b561_CYB561D2_like 99.9 1.2E-24 2.5E-29 171.7 8.7 104 9-116 53-161 (183)
13 smart00665 B561 Cytochrome b-5 99.9 1.6E-23 3.5E-28 156.6 8.8 105 2-110 20-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.7 6E-17 1.3E-21 128.0 8.7 106 3-113 58-163 (191)
15 smart00665 B561 Cytochrome b-5 96.6 0.031 6.7E-07 41.5 9.7 122 16-144 1-126 (129)
16 PF00033 Cytochrom_B_N: Cytoch 96.4 0.02 4.4E-07 43.5 7.6 98 11-112 6-127 (188)
17 cd08554 Cyt_b561 Eukaryotic cy 96.2 0.087 1.9E-06 39.0 10.0 121 15-144 3-128 (131)
18 PF03188 Cytochrom_B561: Eukar 96.2 0.088 1.9E-06 38.9 9.9 122 16-144 1-127 (137)
19 PF13706 PepSY_TM_3: PepSY-ass 95.9 0.0058 1.2E-07 37.2 2.0 31 45-75 2-33 (37)
20 PF10348 DUF2427: Domain of un 95.9 0.028 6.2E-07 41.4 6.1 57 14-72 44-102 (105)
21 cd08761 Cyt_b561_CYB561D2_like 95.2 0.38 8.1E-06 37.8 10.6 125 13-145 20-153 (183)
22 cd08763 Cyt_b561_CYB561 Verteb 95.0 0.31 6.8E-06 37.8 9.3 125 13-145 6-134 (143)
23 cd08760 Cyt_b561_FRRS1_like Eu 94.4 1.1 2.3E-05 35.3 11.4 124 9-142 31-155 (191)
24 PF13301 DUF4079: Protein of u 93.9 0.31 6.8E-06 39.1 7.3 90 12-112 78-171 (175)
25 PF01292 Ni_hydr_CYTB: Prokary 92.1 2.2 4.9E-05 32.3 9.6 99 12-114 5-124 (182)
26 PRK11513 cytochrome b561; Prov 89.6 2.8 6.1E-05 33.0 8.2 97 11-112 7-104 (176)
27 cd08766 Cyt_b561_ACYB-1_like P 88.4 5.5 0.00012 30.9 8.9 126 10-144 4-133 (144)
28 cd08764 Cyt_b561_CG1275_like N 88.0 10 0.00022 31.4 10.8 127 10-144 20-152 (214)
29 KOG4293 Predicted membrane pro 87.9 0.048 1E-06 48.5 -3.2 96 10-112 244-341 (403)
30 PLN02680 carbon-monoxide oxyge 87.0 7.8 0.00017 32.6 9.6 126 9-143 42-171 (232)
31 PF04238 DUF420: Protein of un 86.9 3.4 7.4E-05 31.7 6.9 95 15-114 6-104 (133)
32 PF13703 PepSY_TM_2: PepSY-ass 86.4 5.1 0.00011 27.9 7.1 64 12-75 15-88 (88)
33 COG3038 CybB Cytochrome B561 [ 84.6 6.3 0.00014 31.9 7.7 62 11-72 10-71 (181)
34 PF13172 PepSY_TM_1: PepSY-ass 82.6 1.6 3.6E-05 25.6 2.7 28 80-111 2-29 (34)
35 PF13172 PepSY_TM_1: PepSY-ass 81.9 2.2 4.7E-05 25.1 3.0 29 46-74 4-32 (34)
36 COG3038 CybB Cytochrome B561 [ 81.3 2.7 5.8E-05 34.1 4.3 52 50-109 15-68 (181)
37 TIGR02125 CytB-hydogenase Ni/F 79.2 17 0.00037 28.4 8.3 61 12-72 6-73 (211)
38 PF03929 PepSY_TM: PepSY-assoc 78.7 3.2 6.9E-05 23.7 2.9 25 47-71 1-25 (27)
39 cd08762 Cyt_b561_CYBASC3 Verte 75.3 42 0.00092 27.2 10.2 124 13-144 34-163 (179)
40 PF13706 PepSY_TM_3: PepSY-ass 73.2 4 8.7E-05 24.5 2.5 31 80-114 1-31 (37)
41 cd08765 Cyt_b561_CYBRD1 Verteb 71.3 38 0.00083 26.6 8.2 124 13-144 11-140 (153)
42 PF13703 PepSY_TM_2: PepSY-ass 69.7 18 0.00039 25.1 5.6 25 83-111 60-84 (88)
43 TIGR01583 formate-DH-gamm form 63.1 67 0.0015 25.5 8.4 55 11-65 7-66 (204)
44 PLN02351 cytochromes b561 fami 62.7 97 0.0021 26.3 10.0 121 15-144 52-175 (242)
45 PF00033 Cytochrom_B_N: Cytoch 62.3 63 0.0014 24.1 7.8 84 57-144 14-125 (188)
46 PF01292 Ni_hydr_CYTB: Prokary 57.3 33 0.00073 25.8 5.5 62 9-70 97-166 (182)
47 PF09990 DUF2231: Predicted me 57.2 23 0.0005 25.1 4.3 45 20-64 12-56 (104)
48 PF05449 DUF754: Protein of un 55.2 35 0.00075 24.3 4.8 47 23-69 3-49 (83)
49 PF01794 Ferric_reduct: Ferric 53.2 12 0.00026 26.3 2.3 46 54-102 1-49 (125)
50 PF13301 DUF4079: Protein of u 52.9 49 0.0011 26.5 5.9 27 44-70 143-169 (175)
51 PRK11513 cytochrome b561; Prov 51.6 31 0.00067 27.1 4.6 50 57-111 15-65 (176)
52 PRK05419 putative sulfite oxid 49.5 1.4E+02 0.0031 24.2 8.8 78 19-106 14-92 (205)
53 PRK13673 hypothetical protein; 48.4 47 0.001 25.2 4.9 90 3-110 20-109 (118)
54 PRK10171 hydrogenase 1 b-type 44.2 89 0.0019 25.5 6.4 61 12-72 17-84 (235)
55 PF07457 DUF1516: Protein of u 42.1 98 0.0021 23.0 5.7 51 9-61 28-78 (110)
56 COG2322 Predicted membrane pro 40.3 1.2E+02 0.0025 24.8 6.2 95 14-113 46-144 (177)
57 KOG1583 UDP-N-acetylglucosamin 39.0 49 0.0011 29.2 4.2 35 94-129 165-201 (330)
58 PF02628 COX15-CtaA: Cytochrom 39.0 1.7E+02 0.0037 24.5 7.4 46 49-99 254-299 (302)
59 PF10215 Ost4: Oligosaccaryltr 37.6 49 0.0011 20.1 2.9 20 125-146 8-27 (35)
60 COG1612 CtaA Uncharacterized p 31.2 3.2E+02 0.007 23.9 8.0 89 10-110 226-314 (323)
61 TIGR02125 CytB-hydogenase Ni/F 31.1 1.8E+02 0.0038 22.6 5.9 26 11-36 114-139 (211)
62 PF14358 DUF4405: Domain of un 29.8 1.6E+02 0.0034 19.0 6.1 50 15-64 4-58 (64)
63 PF08449 UAA: UAA transporter 28.9 3.4E+02 0.0073 22.5 8.4 48 94-142 155-205 (303)
64 PLN02810 carbon-monoxide oxyge 28.1 3.7E+02 0.008 22.7 9.4 126 10-144 43-172 (231)
65 PF02628 COX15-CtaA: Cytochrom 26.5 3.8E+02 0.0083 22.4 8.8 82 10-102 64-146 (302)
66 PRK15006 thiosulfate reductase 25.5 1.4E+02 0.0031 25.0 4.8 57 12-68 72-128 (261)
67 PRK10639 formate dehydrogenase 24.3 3.7E+02 0.008 21.4 8.4 57 11-67 12-73 (211)
68 PRK10179 formate dehydrogenase 24.0 3.9E+02 0.0084 21.6 11.5 55 10-64 11-70 (217)
69 PF12270 Cyt_c_ox_IV: Cytochro 23.7 99 0.0022 24.1 3.2 38 19-56 40-92 (137)
70 cd00284 Cytochrome_b_N Cytochr 23.2 4E+02 0.0088 21.5 8.9 80 53-142 24-120 (200)
71 PF13572 DUF4134: Domain of un 23.0 3E+02 0.0064 20.1 5.4 49 20-69 47-96 (98)
72 PF10067 DUF2306: Predicted me 22.9 2.9E+02 0.0062 19.7 6.3 31 79-113 1-31 (103)
73 PRK13553 fumarate reductase cy 21.8 4.8E+02 0.01 22.4 7.2 96 46-147 23-146 (258)
74 PF04238 DUF420: Protein of un 21.1 3.8E+02 0.0083 20.4 8.6 89 10-112 27-128 (133)
75 PLN02594 phosphatidate cytidyl 20.6 6.1E+02 0.013 22.6 8.7 72 37-113 13-90 (342)
76 COG4244 Predicted membrane pro 20.3 3.4E+02 0.0075 21.7 5.7 21 14-34 87-107 (160)
No 1
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=4.4e-50 Score=330.41 Aligned_cols=145 Identities=39% Similarity=0.604 Sum_probs=138.2
Q ss_pred CceeccCCCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc-
Q 036745 1 MAYKTIPGTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS- 78 (151)
Q Consensus 1 l~Yr~~~~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~- 78 (151)
|+||++|.+|+.+|++|+.+|.+|++|+++|++|+|||||++++|||||+|||+|++|+++|++||+.||++ ++|+.+
T Consensus 67 L~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~ 146 (231)
T PLN02810 67 MSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGST 146 (231)
T ss_pred HHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred -hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH-HH-Hh-CC-CCCchhHHHHHHHHHHHHHHHHHhheeeCC
Q 036745 79 -NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK-FI-FL-GL-FRDQEALIVNFTGLLILLFGISVGLTVVLP 149 (151)
Q Consensus 79 -~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek-~~-~~-~~-~~~~e~~l~N~~gl~i~~fg~~v~~~~~~~ 149 (151)
.|++++|||+++ |+++|+||+ +|+++|+.|| +| +. ++ ++|+|++++|++|+++++||++|+|+++.+
T Consensus 147 ~~R~~~lP~Hv~~---Gl~if~LAi-ata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~ 218 (231)
T PLN02810 147 NLRSGSLPWHVLF---GLFVYILAV-GNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITILYGAFVVLTALAQ 218 (231)
T ss_pred hHHHHHhHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 899999999999 999999999 9999999999 33 32 34 999999999999999999999999999986
No 2
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=6e-48 Score=318.33 Aligned_cols=145 Identities=39% Similarity=0.609 Sum_probs=138.1
Q ss_pred CceeccCCCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc-
Q 036745 1 MAYKTIPGTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS- 78 (151)
Q Consensus 1 l~Yr~~~~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~- 78 (151)
|+||+.|.+|+.+|++|+.+|.+|++|+++|++++|||||++++|||||+|||+|++|+++|++||+.|+.+ ++|+.+
T Consensus 67 L~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~ 146 (232)
T PLN02680 67 LAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSR 146 (232)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999 999987
Q ss_pred -hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH-HHH-hC--C-CCCchhHHHHHHHHHHHHHHHHHhheeeCC
Q 036745 79 -NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK-FIF-LG--L-FRDQEALIVNFTGLLILLFGISVGLTVVLP 149 (151)
Q Consensus 79 -~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek-~~~-~~--~-~~~~e~~l~N~~gl~i~~fg~~v~~~~~~~ 149 (151)
.|++++|||+++ |+++|++++ +|+++|+.|| .|. .+ + ++|+|++++|++|+++++||++|+|+++.|
T Consensus 147 ~~R~~~~p~H~~~---G~~if~Lai-aT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~v~~p 219 (232)
T PLN02680 147 NSRASLLPWHVFF---GIYIYALAV-ATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVILAIVTP 219 (232)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHHHhhccc
Confidence 899999999999 999999999 9999999999 333 22 3 899999999999999999999999999996
No 3
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=6.8e-47 Score=313.37 Aligned_cols=144 Identities=33% Similarity=0.548 Sum_probs=135.0
Q ss_pred CceeccCCCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc
Q 036745 1 MAYKTIPGTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESG-IPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS 78 (151)
Q Consensus 1 l~Yr~~~~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~-~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~ 78 (151)
|+||++|.+|+.+|.+|+.+|.+|++|+++|++| ++||+++ +|||||+|||+|++|+++|++||+.||.+ ++|+.+
T Consensus 71 LvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~ 148 (242)
T PLN02351 71 LVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEM 148 (242)
T ss_pred HHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5899999888889999999999999999999999 8888875 79999999999999999999999999999 999998
Q ss_pred --hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH-HHHh---CC-CCCchhHHHHHHHHHHHHHHHHHhheeeCCC
Q 036745 79 --NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK-FIFL---GL-FRDQEALIVNFTGLLILLFGISVGLTVVLPT 150 (151)
Q Consensus 79 --~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek-~~~~---~~-~~~~e~~l~N~~gl~i~~fg~~v~~~~~~~~ 150 (151)
.|++++|||+++ |+++|++|+ +|+++|+.|| .|.. ++ ++|+|++++|++|+++++||++|+|++++|+
T Consensus 149 ~~~Ra~~~P~Hv~~---Gl~if~Lai-aTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~ 223 (242)
T PLN02351 149 RTTRTTVLPWHVFL---GLYTYGLAV-ATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAAVLPK 223 (242)
T ss_pred hhhHHHHhHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 899999999999 999999999 9999999999 3332 34 9999999999999999999999999999984
No 4
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.9e-46 Score=306.34 Aligned_cols=146 Identities=33% Similarity=0.546 Sum_probs=137.5
Q ss_pred CceeccCC-CccchHHHHHHHHHHHHHHHHHHHHHhhhccccC--CCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCC
Q 036745 1 MAYKTIPG-TRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHES--GIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPP 76 (151)
Q Consensus 1 l~Yr~~~~-~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~--~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~ 76 (151)
|+||..|. +|+.+|.+|+.+|.+|++|+++|++++|++||++ ++|||||+|||+|++|+++|++||+.|+.+ ++|+
T Consensus 44 Lvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 44 LVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred HHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57999995 7888899999999999999999999999999999 999999999999999999999999999999 9999
Q ss_pred cc--hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH-HHHh-CC-CCCchhHHHHHHHHHHHHHHHHHhheeeCCC
Q 036745 77 LS--NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK-FIFL-GL-FRDQEALIVNFTGLLILLFGISVGLTVVLPT 150 (151)
Q Consensus 77 ~~--~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek-~~~~-~~-~~~~e~~l~N~~gl~i~~fg~~v~~~~~~~~ 150 (151)
.+ .|++++|+|+++ |+++|++++ +|+++|++|| .|.. ++ ++|+|++++|++|+++++||++|+|++++|+
T Consensus 124 ~~~~~r~~~~p~H~~~---Gl~~fvLai-aT~~lGl~ek~~f~~~~~~~~~~e~~l~N~~gl~~~~fg~~V~~~~~~~~ 198 (214)
T cd08764 124 LPETLRAAYLPLHVFF---GLFIFVLAV-ATALLGITEKAFFSLNKYSNLPAEGVLGNFIGIVLVIFGGLVVYLVTEPD 198 (214)
T ss_pred cchHHHHHHhHHHHHH---HHHHHHHHH-HHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 87 899999999999 999999999 9999999999 4443 45 9999999999999999999999999999974
No 5
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=100.00 E-value=3.1e-46 Score=308.59 Aligned_cols=146 Identities=36% Similarity=0.620 Sum_probs=138.9
Q ss_pred CceeccC-CCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc
Q 036745 1 MAYKTIP-GTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS 78 (151)
Q Consensus 1 l~Yr~~~-~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~ 78 (151)
|+||.+| .+|+.+|.+|..+|.+|++++++|++++|++||+++++||||+|||+|++++++|.+||++||++ ++|+.|
T Consensus 75 L~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~ 154 (245)
T KOG1619|consen 75 LIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSP 154 (245)
T ss_pred eeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6899988 49999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred --hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH--HHHhC-C-CCCchhHHHHHHHHHHHHHHHHHhheeeCCC
Q 036745 79 --NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK--FIFLG-L-FRDQEALIVNFTGLLILLFGISVGLTVVLPT 150 (151)
Q Consensus 79 --~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek--~~~~~-~-~~~~e~~l~N~~gl~i~~fg~~v~~~~~~~~ 150 (151)
.|++++|||+++ |+.+|.+|+ +||++|+.|| |.+.+ + .+++|++++|++|+.+++||++|++.+++|+
T Consensus 155 ~~~Rs~lmP~H~~~---Gl~~f~lai-~ta~~Gl~ek~~f~~~~~~s~~~~e~~l~n~~gv~~il~g~~Vl~~v~~~~ 228 (245)
T KOG1619|consen 155 ESYRSRLMPWHVFL---GLAIFILAI-VTALTGLLEKLTFLCFGDLSTKNPEGYLVNFLGVFIILFGVLVLTLVTPPP 228 (245)
T ss_pred ccHHhhhhhHHHHH---HHHHHHHHH-HHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHheEEEecCC
Confidence 999999999999 999999999 9999999999 33333 3 8899999999999999999999999999985
No 6
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=4.3e-40 Score=257.23 Aligned_cols=113 Identities=28% Similarity=0.490 Sum_probs=106.5
Q ss_pred CceeccC---CCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCC
Q 036745 1 MAYKTIP---GTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPP 76 (151)
Q Consensus 1 l~Yr~~~---~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~ 76 (151)
|+||.+| .+|+.+|++||.+|.+|++|+++|++|+|+|||++++|||||+|||+|++|+++|++||+.|+.+ ++|+
T Consensus 32 L~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 32 IVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred HHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4788665 36999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred cc--hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH-HHHh
Q 036745 77 LS--NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK-FIFL 117 (151)
Q Consensus 77 ~~--~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek-~~~~ 117 (151)
.+ .|++++|||+++ |+++|+|++ +|+++|+.|| .|..
T Consensus 112 ~~~~~r~~~~p~H~~~---G~~i~~Lai-~t~~lG~~ek~~f~~ 151 (153)
T cd08765 112 APVRLRAALMPLHVYS---GLFIFGTVI-ATALMGITEKLIFSL 151 (153)
T ss_pred CcHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 87 899999999999 999999999 9999999999 5544
No 7
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=6e-40 Score=253.94 Aligned_cols=109 Identities=51% Similarity=0.819 Sum_probs=106.6
Q ss_pred CceeccCCCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc-
Q 036745 1 MAYKTIPGTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS- 78 (151)
Q Consensus 1 l~Yr~~~~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~- 78 (151)
|+||+.|.+|+.+|++|+.+|.+|++|+++|++++|+|||++++|||||+|||+|++|+++|++||+.|+.+ ++|+.+
T Consensus 28 L~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~ 107 (144)
T cd08766 28 LAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASR 107 (144)
T ss_pred HHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998 999987
Q ss_pred -hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 036745 79 -NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK 113 (151)
Q Consensus 79 -~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek 113 (151)
.|++++|||+++ |+++|++|+ +|+++|+.||
T Consensus 108 ~~r~~~~p~H~~~---G~~~~~la~-~t~~lGl~ek 139 (144)
T cd08766 108 NTRAALLPWHVFL---GLAIYYLAI-ATAETGLLEK 139 (144)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHH
Confidence 899999999999 999999999 9999999999
No 8
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.2e-39 Score=260.21 Aligned_cols=113 Identities=27% Similarity=0.427 Sum_probs=107.5
Q ss_pred CceeccCC---CccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCC
Q 036745 1 MAYKTIPG---TRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPP 76 (151)
Q Consensus 1 l~Yr~~~~---~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~ 76 (151)
|+||+.|. +|+.+|.+|+.+|.+|++|+++|++|||+|||++++|||||+|||+|++|+++|++||+.|+.+ ++|+
T Consensus 55 L~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 55 LVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred HhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57998883 7889999999999999999999999999999999999999999999999999999999999999 8998
Q ss_pred cc--hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH-HHHh
Q 036745 77 LS--NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK-FIFL 117 (151)
Q Consensus 77 ~~--~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek-~~~~ 117 (151)
.+ .|++++|||+++ |+++|++|+ +|+++|+.|| .|..
T Consensus 135 ~~~~~ra~~~p~H~~~---G~~if~Lai-at~~lGl~ek~~f~~ 174 (179)
T cd08762 135 APMWLRALVKPIHVFF---GAMILVLSI-ASCISGINEKLFFSL 174 (179)
T ss_pred CchhHHHHHhHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 88 899999999999 999999999 9999999999 5554
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.4e-38 Score=244.79 Aligned_cols=110 Identities=33% Similarity=0.551 Sum_probs=106.3
Q ss_pred CceeccCC-CccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc
Q 036745 1 MAYKTIPG-TRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS 78 (151)
Q Consensus 1 l~Yr~~~~-~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~ 78 (151)
|+||+.|. +|+.+|++|+.+|.+|++|+++|++++|+|||++++|||||+|||+|++|+++|++||+.|+.+ ++|+.+
T Consensus 27 L~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~ 106 (143)
T cd08763 27 LVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGAS 106 (143)
T ss_pred HHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 57999994 8999999999999999999999999999999999999999999999999999999999999999 999987
Q ss_pred --hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 036745 79 --NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQKF 114 (151)
Q Consensus 79 --~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek~ 114 (151)
.|++++|||+++ |+++|++++ +|+++|++||.
T Consensus 107 ~~~r~~~~p~H~~~---G~~~f~la~-~t~~lG~~ek~ 140 (143)
T cd08763 107 FTLRSQYKPLHEFF---GRALFLSSV-GTSLLGLTEKL 140 (143)
T ss_pred hHHHHHHhHHHHHH---HHHHHHHHH-HHHHHHHHHHH
Confidence 899999999999 999999999 99999999994
No 10
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.92 E-value=3.8e-25 Score=165.32 Aligned_cols=106 Identities=37% Similarity=0.610 Sum_probs=99.1
Q ss_pred CceeccCC-CccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc
Q 036745 1 MAYKTIPG-TRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS 78 (151)
Q Consensus 1 l~Yr~~~~-~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~ 78 (151)
++||..|. +|+.+|++|+.+|.++++++++|+.+++++|++++.+||+|+|||+|+++++++.+|++.|+.. +.|..+
T Consensus 22 l~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~ 101 (131)
T cd08554 22 LVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLR 101 (131)
T ss_pred HHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46787764 7899999999999999999999999999999999999999999999999999999999999999 788776
Q ss_pred --hhhhhhhhhhhcccchHHHHHHHHHHHHHHHH
Q 036745 79 --NQLQNLHFKMCGNVGKRLILAMALILWAETGL 110 (151)
Q Consensus 79 --~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl 110 (151)
.|+...++|+++ |++++++++ +|+.+|.
T Consensus 102 ~~~r~~~~~~H~~~---G~~~~~la~-~t~~~G~ 131 (131)
T cd08554 102 LSYRSSLLPFHRFF---GLAIFVLAI-ATILLGI 131 (131)
T ss_pred chHHHHHHHHHHHH---HHHHHHHHH-HHHHhcC
Confidence 589999999999 999999999 9999884
No 11
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.92 E-value=9.7e-25 Score=162.94 Aligned_cols=105 Identities=27% Similarity=0.379 Sum_probs=99.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc--hhhhhh
Q 036745 8 GTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS--NQLQNL 84 (151)
Q Consensus 8 ~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~--~r~~~~ 84 (151)
.+|+.++.+|+.+|.++++++++|+++++.+|++++.+||+|+|||+|+++++++.+|.+.|+.. ..|+.+ .|+.+.
T Consensus 29 ~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~ 108 (137)
T PF03188_consen 29 KSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWN 108 (137)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999 667766 788899
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHH-HHH
Q 036745 85 HFKMCGNVGKRLILAMALILWAETGLVQK-FIF 116 (151)
Q Consensus 85 p~H~~~~~~G~~i~~la~~~t~~lGl~ek-~~~ 116 (151)
++|+++ |++++++++ +++.+|+.|+ ||+
T Consensus 109 ~~H~~~---G~~~~~l~~-~~i~~G~~~~~~f~ 137 (137)
T PF03188_consen 109 KWHRWL---GYLIYVLAI-ATIFLGLTEKAWFK 137 (137)
T ss_pred HHHHHH---HHHHHHHHH-HHHHHHHHHHHHhC
Confidence 999999 999999999 9999999888 764
No 12
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.91 E-value=1.2e-24 Score=171.68 Aligned_cols=104 Identities=23% Similarity=0.412 Sum_probs=97.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc----hhhhh
Q 036745 9 TRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS----NQLQN 83 (151)
Q Consensus 9 ~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~----~r~~~ 83 (151)
+|+.++.+|+.+|.+|+.++++|+.++++||+++++|||+|+|||+|+++++++.+|++.|+.. +.|+.. .|+++
T Consensus 53 ~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~ 132 (183)
T cd08761 53 ARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKL 132 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999 555443 67889
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 036745 84 LHFKMCGNVGKRLILAMALILWAETGLVQKFIF 116 (151)
Q Consensus 84 ~p~H~~~~~~G~~i~~la~~~t~~lGl~ek~~~ 116 (151)
+++|+++ |++++++++ +|+.+|++|++++
T Consensus 133 ~~~H~~~---G~~~~~l~~-~t~~lGl~~~~f~ 161 (183)
T cd08761 133 KKYHRLS---GYVAYLLGL-ATLVLGLETRWFS 161 (183)
T ss_pred HHHHHHH---HHHHHHHHH-HHHHHhcCchhhh
Confidence 9999999 999999999 9999999998655
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.90 E-value=1.6e-23 Score=156.59 Aligned_cols=105 Identities=30% Similarity=0.470 Sum_probs=95.0
Q ss_pred ceec-cC-CCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc
Q 036745 2 AYKT-IP-GTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS 78 (151)
Q Consensus 2 ~Yr~-~~-~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~ 78 (151)
.+|. .+ .+|+.++.+|+.+|.+|++++++|+.+++++|++++.+||+|+|||+|+++++++.+|++.|+.. ..|+.+
T Consensus 20 ~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~ 99 (129)
T smart00665 20 VARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLP 99 (129)
T ss_pred HhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4552 34 47889999999999999999999999999999999999999999999999999999999999999 555433
Q ss_pred --hhhhhhhhhhhcccchHHHHHHHHHHHHHHHH
Q 036745 79 --NQLQNLHFKMCGNVGKRLILAMALILWAETGL 110 (151)
Q Consensus 79 --~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl 110 (151)
.|+.+.++|+++ |++++++|+ +|+.+|+
T Consensus 100 ~~~r~~~~~~H~~~---G~~~~~la~-~~~~lG~ 129 (129)
T smart00665 100 SKYRSYLNPYHRFV---GLAAFILAI-VTIFLGL 129 (129)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHH-HHHHccC
Confidence 788999999999 999999999 9999985
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.70 E-value=6e-17 Score=128.03 Aligned_cols=106 Identities=19% Similarity=0.114 Sum_probs=94.1
Q ss_pred eeccCCCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcchhhh
Q 036745 3 YKTIPGTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLSNQLQ 82 (151)
Q Consensus 3 Yr~~~~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~~r~~ 82 (151)
+|.++.+++.+..+|+.+|.++++++++|+..++.++ ..+.++++|.|+|+|+++++++.+|.+.|++.-.|..+.|+.
T Consensus 58 ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~ 136 (191)
T cd08760 58 ARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSI 136 (191)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 4555567788899999999999999999999999988 678899999999999999999999999999663343336777
Q ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 036745 83 NLHFKMCGNVGKRLILAMALILWAETGLVQK 113 (151)
Q Consensus 83 ~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek 113 (151)
+.++|++. |++++++++ +++.+|+.+.
T Consensus 137 ~~~~H~~~---G~~~~~l~~-v~i~~G~~~~ 163 (191)
T cd08760 137 WNWAHRWL---GRAALILAI-VNIFLGLDLA 163 (191)
T ss_pred hHHHHHHH---HHHHHHHHH-HHHHHHHHHh
Confidence 89999999 999999999 9999999885
No 15
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.62 E-value=0.031 Score=41.51 Aligned_cols=122 Identities=12% Similarity=0.026 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcc-hhhhhhhhhhhcccc
Q 036745 16 VHWLLHLIALLA-GVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLS-NQLQNLHFKMCGNVG 93 (151)
Q Consensus 16 ~H~~l~~~A~~~-~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~-~r~~~~p~H~~~~~~ 93 (151)
.|..+..+|+.. ...|+...-......+.++...+|-++.++++++...=...++.. ... .++.....|...
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~---~~~~~~~~~~s~H~~l--- 74 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFIS---HNESGIANFYSLHSWL--- 74 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccccCCCCccchhHHH---
Confidence 489999999955 445555543213444667888999999999998866444444433 222 335677899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC-CCCCch-hHHHHHHHHHHHHHHHHHhh
Q 036745 94 KRLILAMALILWAETGLVQKFIFLG-LFRDQE-ALIVNFTGLLILLFGISVGL 144 (151)
Q Consensus 94 G~~i~~la~~~t~~lGl~ek~~~~~-~~~~~e-~~l~N~~gl~i~~fg~~v~~ 144 (151)
|++++++.. .+...|+..-+.... .+.+++ ...=..+|.++.+.|+.-.+
T Consensus 75 Gl~~~~l~~-~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~ 126 (129)
T smart00665 75 GLAAFVLAG-LQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIF 126 (129)
T ss_pred HHHHHHHHH-HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999986432210 111111 12335789988888887554
No 16
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=96.38 E-value=0.02 Score=43.46 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh----ccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh--------------
Q 036745 11 RAQKTVHWLLHLIALLAGVIGIYAVFK----FHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-------------- 72 (151)
Q Consensus 11 ~~~K~~H~~l~~~A~~~~viGl~avf~----~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-------------- 72 (151)
...+..||..=..-+++.+.|+...+. -...........+|-++|++...+..+..+.++..
T Consensus 6 ~~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T PF00033_consen 6 LFTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQI 85 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Confidence 456899999988888999999988633 22333557888999999999999999999999988
Q ss_pred ----ccCCcc--hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 036745 73 ----VQPPLS--NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQ 112 (151)
Q Consensus 73 ----l~P~~~--~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~e 112 (151)
..+... .+.+..+..+.. -.+++.+.. ..++||+.-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~-~~~iTG~~~ 127 (188)
T PF00033_consen 86 PQYRLFPRKPPPPSGKYNPLQKLV---YWALYLLLL-LMAITGLIM 127 (188)
T ss_dssp HHHHTT-HHHH----SS-HHHHHH---HHHHHHHHH-HHHHHHHHC
T ss_pred HHhhccCCCCCCCcchhhhHHHHH---HHHHHHHHH-HHHHHHHHH
Confidence 332222 344555666666 777788877 899999876
No 17
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.20 E-value=0.087 Score=39.01 Aligned_cols=121 Identities=17% Similarity=0.089 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc-hhhhhhhhhhhcc
Q 036745 15 TVHWLLHLIALL-AGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS-NQLQNLHFKMCGN 91 (151)
Q Consensus 15 ~~H~~l~~~A~~-~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~-~r~~~~p~H~~~~ 91 (151)
..|..+..+++. +...|+.+ ++.-+..+.+...-+|..+..++..+.. .|+.. ..-... .++.....|..+
T Consensus 3 ~~H~~lm~~g~~~l~~~~il~-~r~~~~~~~~~~~~~H~~l~~l~~~~~~----~G~~~~~~~~~~~~~~h~~s~Hs~l- 76 (131)
T cd08554 3 NWHPLLMVIGFVFLMGEALLV-YRVFRLLTKRALKLLHAILHLLAFVLGL----VGLLAVFLFHNAGGIANLYSLHSWL- 76 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHH-hccccccchhHHHHHHHHHHHHHHHHHH----HHHHHHHHhccccCcccchhHHHHH-
Confidence 369999999987 55555544 4432334556777899999998887765 45544 222222 455677899999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC-C-CCchhHHHHHHHHHHHHHHHHHhh
Q 036745 92 VGKRLILAMALILWAETGLVQKFIFLGL-F-RDQEALIVNFTGLLILLFGISVGL 144 (151)
Q Consensus 92 ~~G~~i~~la~~~t~~lGl~ek~~~~~~-~-~~~e~~l~N~~gl~i~~fg~~v~~ 144 (151)
|++++++.. .+...|+...+...+. + ++.-...=...|..+.+.++...+
T Consensus 77 --Gl~~~~l~~-~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~ 128 (131)
T cd08554 77 --GLATVLLFL-LQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATIL 128 (131)
T ss_pred --HHHHHHHHH-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999886443211 1 222334556788888888776554
No 18
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.18 E-value=0.088 Score=38.89 Aligned_cols=122 Identities=15% Similarity=0.057 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhcc-ccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcc-hhhhhhhhhhhccc
Q 036745 16 VHWLLHLIALLAGV-IGIYAVFKFH-HESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLS-NQLQNLHFKMCGNV 92 (151)
Q Consensus 16 ~H~~l~~~A~~~~v-iGl~avf~~h-~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~-~r~~~~p~H~~~~~ 92 (151)
.|..+..+|+.+.. .|+.+...++ +..+.+.....|..+-.+.+++...=....+.. ... .+....-+|...
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~---~~~~~~~h~~s~H~~l-- 75 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFIN---KNRNGKPHFKSWHSIL-- 75 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccCCCCCCCchhhh--
Confidence 48999999998655 6666655432 234668888999999988777655433333322 111 334566789999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC--CCCchhHHHHHHHHHHHHHHHHHhh
Q 036745 93 GKRLILAMALILWAETGLVQKFIFLGL--FRDQEALIVNFTGLLILLFGISVGL 144 (151)
Q Consensus 93 ~G~~i~~la~~~t~~lGl~ek~~~~~~--~~~~e~~l~N~~gl~i~~fg~~v~~ 144 (151)
|++++++.. ...+.|+...+...++ .++.-...=..+|.++.+.|..-.+
T Consensus 76 -G~~~~~l~~-~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~ 127 (137)
T PF03188_consen 76 -GLATFVLAL-LQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIF 127 (137)
T ss_pred -hHHHHHHHH-HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999987543211 2222222356778877777765443
No 19
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=95.92 E-value=0.0058 Score=37.18 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=27.3
Q ss_pred CCchhHhHHHHHHHHHHHHhhhhhhhhh-ccC
Q 036745 45 PNMYTLHSWLGMITICLYGLQNFKSTVT-VQP 75 (151)
Q Consensus 45 ~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P 75 (151)
..++.+|+|+|+++-.++.+-.+.|.++ +.|
T Consensus 2 r~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 2 RILRKLHRWLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3578999999999999999999999998 555
No 20
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=95.91 E-value=0.028 Score=41.42 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc--hhHhHHHHHHHHHHHHhhhhhhhhh
Q 036745 14 KTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNM--YTLHSWLGMITICLYGLQNFKSTVT 72 (151)
Q Consensus 14 K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~--ySlHSWlGl~t~~L~~lQ~~~G~~~ 72 (151)
-+.|.-.|.+++++.++|+..-..++++. ||+ -+.|+.+|.+..++...|.+.|+..
T Consensus 44 sr~~~~~q~~~~~l~~~g~~~g~~~~~~~--p~lyp~n~H~k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 44 SRWHLPVQTVFLVLMILGLFLGSVYNGST--PDLYPNNAHGKMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999988876655443 455 5799999999999999999999864
No 21
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.21 E-value=0.38 Score=37.85 Aligned_cols=125 Identities=12% Similarity=0.017 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc-hhhhhhhhh
Q 036745 13 QKTVHWLLHLIALLAGVIGIYAVFKFHHE---SGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS-NQLQNLHFK 87 (151)
Q Consensus 13 ~K~~H~~l~~~A~~~~viGl~avf~~h~~---~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~-~r~~~~p~H 87 (151)
.-..|..++.+++.+..-.-...++..+. .+++.-.-+|.++...++.+.. .|+.. ..-+.. .++.+.-+|
T Consensus 20 ~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~----~G~~~~~~~~~~~~~~hf~s~H 95 (183)
T cd08761 20 LFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCIL----AGLVAIYYNKERNGKPHFTSWH 95 (183)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHhcccCCCCCccchh
Confidence 45789999999999766665555553222 2566777899999998887754 55555 333322 455677899
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHh--C-C-CCCchhHHHHHHHHHHHHHHHHHhhe
Q 036745 88 MCGNVGKRLILAMALILWAETGLVQKFIFL--G-L-FRDQEALIVNFTGLLILLFGISVGLT 145 (151)
Q Consensus 88 ~~~~~~G~~i~~la~~~t~~lGl~ek~~~~--~-~-~~~~e~~l~N~~gl~i~~fg~~v~~~ 145 (151)
..+ |++++.+.+ .+...|+...+... + . ++..-...=..+|.++.+.|+.-...
T Consensus 96 ~~l---Gl~~~~l~~-~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~l 153 (183)
T cd08761 96 GIL---GLVTVILIV-LQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVL 153 (183)
T ss_pred HHH---HHHHHHHHH-HHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999999 99999998764322 1 1 11111233356788877777765543
No 22
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=94.97 E-value=0.31 Score=37.82 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccC-Ccchhhhhhhhhhhc
Q 036745 13 QKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQP-PLSNQLQNLHFKMCG 90 (151)
Q Consensus 13 ~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P-~~~~r~~~~p~H~~~ 90 (151)
.-..|..++.+++++...--..+|+......++.....|.++++.++++.. .|+.. +.- .......+...|-++
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~----~Gl~av~~~h~~~~~~hf~SlHswl 81 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISL----VGLVAVFDYHQANGYPDMYSLHSWC 81 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHH----HHHHHHHHHccccCCCccccHHHHH
Confidence 456899999999998887777778655545666677899999999988754 56666 322 222456788899999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchhH-HHHHHHHHHHHHHHHHhhe
Q 036745 91 NVGKRLILAMALILWAETGLVQKFIFL-GLFRDQEAL-IVNFTGLLILLFGISVGLT 145 (151)
Q Consensus 91 ~~~G~~i~~la~~~t~~lGl~ek~~~~-~~~~~~e~~-l~N~~gl~i~~fg~~v~~~ 145 (151)
|++++.+-. .+.+.|+..-++.. ..+..+.-. .=-+.|+.+.+.++.....
T Consensus 82 ---Gl~t~~L~~-lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~l 134 (143)
T cd08763 82 ---GILTFVLYF-LQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLL 134 (143)
T ss_pred ---HHHHHHHHH-HHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999998754321 111111111 2356788777777665543
No 23
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=94.45 E-value=1.1 Score=35.34 Aligned_cols=124 Identities=20% Similarity=0.096 Sum_probs=82.2
Q ss_pred CccchHHHHHHHHHHHHHHHH-HHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcchhhhhhhhh
Q 036745 9 TRRAQKTVHWLLHLIALLAGV-IGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLSNQLQNLHFK 87 (151)
Q Consensus 9 ~k~~~K~~H~~l~~~A~~~~v-iGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~~r~~~~p~H 87 (151)
+++.....|..++.+|..+.. .|+.+.-.+ ..+.+...-+|-.+=++++++...=+..|+..- ...+......|
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~--~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H 105 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYF--LLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAH 105 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcc
Confidence 467788999999999998865 565554332 344556666999999888888776666665543 12456678899
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHH
Q 036745 88 MCGNVGKRLILAMALILWAETGLVQKFIFLGLFRDQEALIVNFTGLLILLFGISV 142 (151)
Q Consensus 88 ~~~~~~G~~i~~la~~~t~~lGl~ek~~~~~~~~~~e~~l~N~~gl~i~~fg~~v 142 (151)
... |++++++.+ ...+.|+..+....+ .++.-...==.+|.++.+.|..-
T Consensus 106 ~~l---Gl~~~~l~~-lQ~~~G~~~~~~~~~-~R~~~~~~H~~~G~~~~~l~~v~ 155 (191)
T cd08760 106 AIL---GIIVLALAI-LQPLLGLLRPHPGSK-KRSIWNWAHRWLGRAALILAIVN 155 (191)
T ss_pred hhh---hHHHHHHHH-HHHHHHHhcCCCCCC-cccchHHHHHHHHHHHHHHHHHH
Confidence 999 999999999 999999865421111 12211233334555555555543
No 24
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=93.86 E-value=0.31 Score=39.09 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHHHH----HHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcchhhhhhhhh
Q 036745 12 AQKTVHWLLHLIALLA----GVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLSNQLQNLHFK 87 (151)
Q Consensus 12 ~~K~~H~~l~~~A~~~----~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~~r~~~~p~H 87 (151)
..|..|+-+=...+.. ...|...++.+. -|=|.|.|-|.|+..+.|...+....-. .+++. +.+..+.|
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~----~~lf~spH~~~Gl~~~~L~~~s~al~~~-i~~g~--~~~~R~lH 150 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQN----GKLFWSPHLWAGLAVVGLMAFSAALVPQ-IQKGN--RPWARRLH 150 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcC----CCCccCchHHHHHHHHHHHHHHHHHHHH-HccCC--chhHHHHH
Confidence 3456665544444333 334444555433 3367899999999999999877543221 34432 34666799
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHH
Q 036745 88 MCGNVGKRLILAMALILWAETGLVQ 112 (151)
Q Consensus 88 ~~~~~~G~~i~~la~~~t~~lGl~e 112 (151)
... +.+++++-. ..+.+|...
T Consensus 151 i~l---N~~~l~Lf~-~q~itG~~i 171 (175)
T PF13301_consen 151 IYL---NSLALLLFA-WQAITGWRI 171 (175)
T ss_pred HHH---HHHHHHHHH-HHHHHHHHH
Confidence 999 999999999 999999753
No 25
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=92.14 E-value=2.2 Score=32.28 Aligned_cols=99 Identities=16% Similarity=0.064 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc--hhHhHHHHHHHHHHHHhhhhhhhhhccCCcc-----------
Q 036745 12 AQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNM--YTLHSWLGMITICLYGLQNFKSTVTVQPPLS----------- 78 (151)
Q Consensus 12 ~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~--ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~----------- 78 (151)
..+..||..=..-+.+...|+..-+........+.. ..+|-|.|++...+...=........+|...
T Consensus 5 ~~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
T PF01292_consen 5 FTRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLY 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 457899999999999999999886655444433333 8899999999888776655555111222221
Q ss_pred --------hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 036745 79 --------NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQKF 114 (151)
Q Consensus 79 --------~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek~ 114 (151)
...++-|.-+.. -.+.+++.+ +.+.||+.-.+
T Consensus 85 ~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~-~~~iTG~~~~~ 124 (182)
T PF01292_consen 85 FLLRGKPPPAGKYNPGQKIV---HWVLYLLLL-LLPITGLLLWF 124 (182)
T ss_pred HHhcCCCCCCCcCChHHHHH---HHHHHHHHH-HHHHHHHHHHH
Confidence 111222222233 455566666 78888888754
No 26
>PRK11513 cytochrome b561; Provisional
Probab=89.64 E-value=2.8 Score=33.04 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=56.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcchh-hhhhhhhhh
Q 036745 11 RAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLSNQ-LQNLHFKMC 89 (151)
Q Consensus 11 ~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~~r-~~~~p~H~~ 89 (151)
+..+..||..=.+-+.....|.......+ ...+.++++|-.+|++++.+..+..+..+..--|..+.. +... ...
T Consensus 7 ~~~~~lHWl~a~li~~~~~~~~~~~~~~~--~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~--~~~ 82 (176)
T PRK11513 7 RLQIGIHWLVFLLVIVAYCAMEFRGFFPR--SDRPLINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMM--TGL 82 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHH--HHH
Confidence 45689999654333333333332211111 123467899999999999999999999997744543310 1111 111
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 036745 90 GNVGKRLILAMALILWAETGLVQ 112 (151)
Q Consensus 90 ~~~~G~~i~~la~~~t~~lGl~e 112 (151)
.+.+-.+.|++-+ +..++|+.-
T Consensus 83 A~~~H~~LY~lli-~~plsG~~~ 104 (176)
T PRK11513 83 AHLGHLVIYLLFI-ALPVIGLVM 104 (176)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH
Confidence 1122445577777 888888863
No 27
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=88.39 E-value=5.5 Score=30.92 Aligned_cols=126 Identities=13% Similarity=-0.016 Sum_probs=80.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhc-cCCcc-hhhhhhhhh
Q 036745 10 RRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTV-QPPLS-NQLQNLHFK 87 (151)
Q Consensus 10 k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l-~P~~~-~r~~~~p~H 87 (151)
+...-..|-.++.+++++...=-..+|+.. ...++.-...|-++=++++.+. +.|+... .-... ....+..+|
T Consensus 4 ~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~-~~~k~~~k~iH~~l~~la~~~~----vvGl~avf~~~~~~~~~~~~SlH 78 (144)
T cd08766 4 KGLIFNVHPVLMVIGFIFLAGEAILAYKTV-PGSREVQKAVHLTLHLVALVLG----IVGIYAAFKFHNEVGIPNLYSLH 78 (144)
T ss_pred CcceeeccHHHHHHHHHHHHHHHHHHhhcc-ccccchhHHHHHHHHHHHHHHH----HHHHHHHHHHhcccCccccccHH
Confidence 444567899999999866665455666632 2334444679999888887764 4566662 22222 456688899
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHhCC-CCCchh-HHHHHHHHHHHHHHHHHhh
Q 036745 88 MCGNVGKRLILAMALILWAETGLVQKFIFLGL-FRDQEA-LIVNFTGLLILLFGISVGL 144 (151)
Q Consensus 88 ~~~~~~G~~i~~la~~~t~~lGl~ek~~~~~~-~~~~e~-~l~N~~gl~i~~fg~~v~~ 144 (151)
-++ |+.++++-. ...+.|+..-++.... +..+.- -.=-+.|+.+.+.++....
T Consensus 79 Swl---Gl~t~~L~~-lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~ 133 (144)
T cd08766 79 SWL---GIGTISLFG-LQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAE 133 (144)
T ss_pred HHH---HHHHHHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999999 9999999884332110 111100 1224677777777766543
No 28
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=87.96 E-value=10 Score=31.36 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=80.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhcc--CCcc--hhhhhhh
Q 036745 10 RRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQ--PPLS--NQLQNLH 85 (151)
Q Consensus 10 k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~--P~~~--~r~~~~p 85 (151)
+...-..|..++.+++++...=-..+|+.-...++..-...|..+.+.++++.. .|+.+.| -... ..+.++.
T Consensus 20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~i----vGl~avf~~hn~~~~~~~hfyS 95 (214)
T cd08764 20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAV----IGLKAVFDSHNLAKPPIPNMYS 95 (214)
T ss_pred CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccCCCCcccc
Confidence 333457899999999966555445555532222344456799999999988754 4554422 1112 3456778
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHH-hCC-CCCchhHHHHHHHHHHHHHHHHHhh
Q 036745 86 FKMCGNVGKRLILAMALILWAETGLVQKFIF-LGL-FRDQEALIVNFTGLLILLFGISVGL 144 (151)
Q Consensus 86 ~H~~~~~~G~~i~~la~~~t~~lGl~ek~~~-~~~-~~~~e~~l~N~~gl~i~~fg~~v~~ 144 (151)
+|-++ |+.++.+-. .+.+.|+..-++. .+. .+++---.=-+.|+.+.+.++....
T Consensus 96 lHSwl---Gl~t~~L~~-lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~ 152 (214)
T cd08764 96 LHSWL---GLTAVILFS-LQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATAL 152 (214)
T ss_pred hHHHH---HHHHHHHHH-HHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999 9999999774332 111 1111111234677777776665543
No 29
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=87.92 E-value=0.048 Score=48.49 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcc--hhhhhhhhh
Q 036745 10 RRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLS--NQLQNLHFK 87 (151)
Q Consensus 10 k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~--~r~~~~p~H 87 (151)
...+-..|-.+|..++++.+.|....-+.-++ ....-++.|.-+|+.+.++=.+|++..+.= |... .|+..--||
T Consensus 244 ~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~-s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~R--p~~~~k~R~~~nwyH 320 (403)
T KOG4293|consen 244 DPTWFYIHRACQFTGFILGVAGFVDGLKLSNE-SDGTVYSAHTDLGIILLVLAFLQPLALLLR--PLPESKIRRYWNWYH 320 (403)
T ss_pred CcchhhhhhhheeeEEEEEeeeeeeeEEEccC-CCceeeeecccchhHHHHHHHHHHHHHHhc--CCcccCceeccceee
Confidence 66778999999999988888887776553333 556888999999999999999999988744 4443 666667899
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHH
Q 036745 88 MCGNVGKRLILAMALILWAETGLVQ 112 (151)
Q Consensus 88 ~~~~~~G~~i~~la~~~t~~lGl~e 112 (151)
... |+...+++. +++.-|+..
T Consensus 321 ~~~---g~~~~~~~~-~~i~~~~~l 341 (403)
T KOG4293|consen 321 HLV---GRLSIILGI-VNIFDGLEL 341 (403)
T ss_pred eec---Ccceeeehh-hHHhhhHhh
Confidence 999 999999999 999888774
No 30
>PLN02680 carbon-monoxide oxygenase
Probab=87.05 E-value=7.8 Score=32.60 Aligned_cols=126 Identities=14% Similarity=0.043 Sum_probs=83.1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-cc-CCcchhhhhhhh
Q 036745 9 TRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQ-PPLSNQLQNLHF 86 (151)
Q Consensus 9 ~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~-P~~~~r~~~~p~ 86 (151)
++...-..|-.++.+++++...--..+|+... ..+..-...|-.+=.+.+++. +.|+.. +. -....+..+..+
T Consensus 42 ~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~-~~k~~~K~iH~~L~~lA~~l~----vvGl~avfk~hn~~~~~nfySl 116 (232)
T PLN02680 42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVP-GTKNLKKLVHLTLQFLAFCLS----LIGVWAALKFHNEKGIDNFYSL 116 (232)
T ss_pred CCcceEechHHHHHHHHHHHHHHHHhcccccc-ccchhHHHHHHHHHHHHHHHH----HHHHHHHHHhccccCccccccH
Confidence 34445579999999999997655555565332 334556788999888887775 466666 22 222255778889
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHhCC-CCCchh-HHHHHHHHHHHHHHHHHh
Q 036745 87 KMCGNVGKRLILAMALILWAETGLVQKFIFLGL-FRDQEA-LIVNFTGLLILLFGISVG 143 (151)
Q Consensus 87 H~~~~~~G~~i~~la~~~t~~lGl~ek~~~~~~-~~~~e~-~l~N~~gl~i~~fg~~v~ 143 (151)
|-+. |+.++.+-. .+.+.|+..-++.... +..+.- -.=-+.|+.+.+.++...
T Consensus 117 HSWl---Gl~t~iL~~-lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~ 171 (232)
T PLN02680 117 HSWL---GLACLFLFS-LQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATA 171 (232)
T ss_pred HHHH---HHHHHHHHH-HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999 9999999985332111 111111 122466777777666544
No 31
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=86.94 E-value=3.4 Score=31.73 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcc-hhhhhhh---hhhhc
Q 036745 15 TVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLS-NQLQNLH---FKMCG 90 (151)
Q Consensus 15 ~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~-~r~~~~p---~H~~~ 90 (151)
.+.+.++.++.++...|+.++-+-+.+.+..-| -.=.-+-.+.+..|..+...|=..-|++.. .|.-+.+ .|...
T Consensus 6 ~l~a~~~~~s~~ll~~g~~~Ir~~~~~~Hr~~M-l~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~L 84 (133)
T PF04238_consen 6 DLNAVLNAISAVLLLIGWYFIRRGRIKLHRKLM-LTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIIL 84 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHH
Confidence 467889999999999999998643332222211 111112222233444444443333456555 6665555 59999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 036745 91 NVGKRLILAMALILWAETGLVQKF 114 (151)
Q Consensus 91 ~~~G~~i~~la~~~t~~lGl~ek~ 114 (151)
-..+..+.+ .|...|+.+++
T Consensus 85 ---A~~~~pL~l-~tl~~a~~~~~ 104 (133)
T PF04238_consen 85 ---AIVALPLVL-YTLYRALRGRF 104 (133)
T ss_pred ---HHHHHHHHH-HHHHHHHHcCh
Confidence 999999999 99999998863
No 32
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=86.41 E-value=5.1 Score=27.90 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhh--cc------ccC--CCCCchhHhHHHHHHHHHHHHhhhhhhhhhccC
Q 036745 12 AQKTVHWLLHLIALLAGVIGIYAVFK--FH------HES--GIPNMYTLHSWLGMITICLYGLQNFKSTVTVQP 75 (151)
Q Consensus 12 ~~K~~H~~l~~~A~~~~viGl~avf~--~h------~~~--~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P 75 (151)
..+.+=...=.+.+++.+.|++.-.. .+ ... +....+.+|..+|+.+.....+=.+.|....+|
T Consensus 15 ~G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~~~dlH~~~G~~~~~~ll~~a~TG~~~~~~ 88 (88)
T PF13703_consen 15 WGRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRRWFDLHRVLGLWFLPFLLVIALTGLFFSFP 88 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 35666667777788888889887653 11 111 122278899999999988888878888776554
No 33
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=84.55 E-value=6.3 Score=31.89 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=54.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh
Q 036745 11 RAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT 72 (151)
Q Consensus 11 ~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~ 72 (151)
..+..+||..=++-+...+.|....+..+.+...-+++.+|=.+|+.+..|..+-.+..+..
T Consensus 10 ~~~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~ 71 (181)
T COG3038 10 LVQIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRN 71 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45688999999999999999999988877666677999999999999999999998888876
No 34
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=82.60 E-value=1.6 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.000 Sum_probs=22.9
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 036745 80 QLQNLHFKMCGNVGKRLILAMALILWAETGLV 111 (151)
Q Consensus 80 r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ 111 (151)
|+....+|++. |+.+.+..+ .-|++|+.
T Consensus 2 r~~~~~~H~~~---g~~~~~~ll-~~~lTG~~ 29 (34)
T PF13172_consen 2 RKFWRKIHRWL---GLIAAIFLL-LLALTGAL 29 (34)
T ss_pred hHHHHHHHHHH---HHHHHHHHH-HHHHHHHH
Confidence 67778889988 888888888 88888864
No 35
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=81.90 E-value=2.2 Score=25.07 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=24.5
Q ss_pred CchhHhHHHHHHHHHHHHhhhhhhhhhcc
Q 036745 46 NMYTLHSWLGMITICLYGLQNFKSTVTVQ 74 (151)
Q Consensus 46 ~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~ 74 (151)
.+..+|-|+|+.+.....+..+.|....+
T Consensus 4 ~~~~~H~~~g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 4 FWRKIHRWLGLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35689999999999999999999987644
No 36
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=81.29 E-value=2.7 Score=34.05 Aligned_cols=52 Identities=15% Similarity=-0.005 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhh-ccCCcc-hhhhhhhhhhhcccchHHHHHHHHHHHHHHH
Q 036745 50 LHSWLGMITICLYGLQNFKSTVT-VQPPLS-NQLQNLHFKMCGNVGKRLILAMALILWAETG 109 (151)
Q Consensus 50 lHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~-~r~~~~p~H~~~~~~G~~i~~la~~~t~~lG 109 (151)
+|=++.+ ++..|+..|... .+|+.+ .|.....+|.-+ |++++++++ .=++..
T Consensus 15 lHWl~al----lv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~---Gi~vl~L~v-~Rl~wr 68 (181)
T COG3038 15 LHWLMAL----LVIGAFALGELMGFLPRGPGLYFLLYELHKSI---GILVLALMV-LRLLWR 68 (181)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcccCchHHHHHHHHHHHH---HHHHHHHHH-HHHHHH
Confidence 5655544 555677788888 899888 999999999999 999999998 444433
No 37
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=79.24 E-value=17 Score=28.40 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccccC-C------CCCchhHhHHHHHHHHHHHHhhhhhhhhh
Q 036745 12 AQKTVHWLLHLIALLAGVIGIYAVFKFHHES-G------IPNMYTLHSWLGMITICLYGLQNFKSTVT 72 (151)
Q Consensus 12 ~~K~~H~~l~~~A~~~~viGl~avf~~h~~~-~------~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~ 72 (151)
..+..||..=..-+++...|+...+...... + ...++.+|-++|++...+...=.+.++..
T Consensus 6 ~~R~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl~~~~~~ 73 (211)
T TIGR02125 6 PVRLFHWVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRVYLAFVG 73 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3578899877777778888887654321110 1 12467899999999998887666555543
No 38
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=78.70 E-value=3.2 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=19.0
Q ss_pred chhHhHHHHHHHHHHHHhhhhhhhh
Q 036745 47 MYTLHSWLGMITICLYGLQNFKSTV 71 (151)
Q Consensus 47 ~ySlHSWlGl~t~~L~~lQ~~~G~~ 71 (151)
|+.+|.|++.++...+.+=.+.|+.
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889888888877777776654
No 39
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=75.30 E-value=42 Score=27.17 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccc-c-CCCCCchhHhHHHHHHHHHHHHhhhhhhhhhcc--CCcchhhhhhhhhh
Q 036745 13 QKTVHWLLHLIALLAGVIGIYAVFKFHH-E-SGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQ--PPLSNQLQNLHFKM 88 (151)
Q Consensus 13 ~K~~H~~l~~~A~~~~viGl~avf~~h~-~-~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~--P~~~~r~~~~p~H~ 88 (151)
.-..|-.+..+++++..-=-..+|+.-. . .++.-....|..+=..++++ .+.|+.+.| -.....+.++.+|-
T Consensus 34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~----~vvGl~avf~~hn~~~~~nlySlHS 109 (179)
T cd08762 34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFIL----TVIGLCAVFNFHNVHHTANLYSLHS 109 (179)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHH----HHHHHHHHHHhccccCccchhhHHH
Confidence 6789999999999988666666666322 1 12333568999988877765 446666632 22224566788999
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchh-HHHHHHHHHHHHHHHHHhh
Q 036745 89 CGNVGKRLILAMALILWAETGLVQKFIFL-GLFRDQEA-LIVNFTGLLILLFGISVGL 144 (151)
Q Consensus 89 ~~~~~G~~i~~la~~~t~~lGl~ek~~~~-~~~~~~e~-~l~N~~gl~i~~fg~~v~~ 144 (151)
+. |+.+..+-. ...+.|+..-++.. +....+.- -.==+.|+.+.++++....
T Consensus 110 Wl---Gl~t~~Lf~-lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~ 163 (179)
T cd08762 110 WV---GICTVALFT-CQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCI 163 (179)
T ss_pred HH---HHHHHHHHH-HHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999 99999998843322 11111111 1223567777777766543
No 40
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=73.15 E-value=4 Score=24.54 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=26.6
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 036745 80 QLQNLHFKMCGNVGKRLILAMALILWAETGLVQKF 114 (151)
Q Consensus 80 r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek~ 114 (151)
|+.+...|++. |+.+-++-. ..+.+|..--|
T Consensus 1 rr~~~~~H~W~---Gl~~g~~l~-~~~~tG~~~~f 31 (37)
T PF13706_consen 1 RRILRKLHRWL---GLILGLLLF-VIFLTGAVMVF 31 (37)
T ss_pred ChHHHHHHHHH---HHHHHHHHH-HHHHHhHHHHH
Confidence 57788999999 999999998 99999976654
No 41
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=71.25 E-value=38 Score=26.64 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc-c-cCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccC-Ccchhhhhhhhhh
Q 036745 13 QKTVHWLLHLIALLAGVIGIYAVFKFH-H-ESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQP-PLSNQLQNLHFKM 88 (151)
Q Consensus 13 ~K~~H~~l~~~A~~~~viGl~avf~~h-~-~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P-~~~~r~~~~p~H~ 88 (151)
.-..|-.++.+++++...=-..+|+.- . ...++.-...|-++=.+++++. +.|+.. +.- .......+..+|-
T Consensus 11 ~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~----i~Gl~avf~~hn~~~~~~fySlHS 86 (153)
T cd08765 11 EFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILA----IISVVAVFVFHNAKNIPNMYSLHS 86 (153)
T ss_pred eeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHccccCCCccccHHH
Confidence 456899999999888555455556521 1 1234556789998877777764 466665 322 2225577889999
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchhH-HHHHHHHHHHHHHHHHhh
Q 036745 89 CGNVGKRLILAMALILWAETGLVQKFIFL-GLFRDQEAL-IVNFTGLLILLFGISVGL 144 (151)
Q Consensus 89 ~~~~~G~~i~~la~~~t~~lGl~ek~~~~-~~~~~~e~~-l~N~~gl~i~~fg~~v~~ 144 (151)
+. |+.++.+-. ...+.|+..-++.. +.+..+.-. .==+.|+.+.+.++....
T Consensus 87 wl---Gl~t~~l~~-lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~ 140 (153)
T cd08765 87 WV---GLAAVILYP-LQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATAL 140 (153)
T ss_pred HH---HHHHHHHHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999 99999998864432 111111001 112466766666665543
No 42
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=69.66 E-value=18 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.4
Q ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 036745 83 NLHFKMCGNVGKRLILAMALILWAETGLV 111 (151)
Q Consensus 83 ~~p~H~~~~~~G~~i~~la~~~t~~lGl~ 111 (151)
...+|+.. |.......+ .-+.||..
T Consensus 60 ~~dlH~~~---G~~~~~~ll-~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVL---GLWFLPFLL-VIALTGLF 84 (88)
T ss_pred HHHHHHHH---HHHHHHHHH-HHHHHHHH
Confidence 67799999 999999999 99999975
No 43
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=63.10 E-value=67 Score=25.51 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=39.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhcccc-----CCCCCchhHhHHHHHHHHHHHHhh
Q 036745 11 RAQKTVHWLLHLIALLAGVIGIYAVFKFHHE-----SGIPNMYTLHSWLGMITICLYGLQ 65 (151)
Q Consensus 11 ~~~K~~H~~l~~~A~~~~viGl~avf~~h~~-----~~~~~~ySlHSWlGl~t~~L~~lQ 65 (151)
...+..||+.=..-+++.+.|+...+..-.- .+.+....+|-+.|.+.+..+..-
T Consensus 7 ~~~r~~HW~~a~~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~i~~ 66 (204)
T TIGR01583 7 LFDRILHWIAAISFLILVFTGFVMMFGKFFWLGVILGELWVAKNLHPFAGILFFISIIPM 66 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889998888888999999886642211 122356679999999888777655
No 44
>PLN02351 cytochromes b561 family protein
Probab=62.66 E-value=97 Score=26.33 Aligned_cols=121 Identities=13% Similarity=0.004 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcc-hhhhhhhhhhhcccc
Q 036745 15 TVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLS-NQLQNLHFKMCGNVG 93 (151)
Q Consensus 15 ~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~-~r~~~~p~H~~~~~~ 93 (151)
..|-.+..+++++..-=-..+|+.=...++ -...+|-++=.+++++- +.|+.+-+-... ..+.++.+|-++
T Consensus 52 n~HP~lMviGfi~L~geAILvYR~~~~~~k-~~K~lH~~Lh~~Ali~~----vvGl~a~fh~~~~~i~nlySLHSWl--- 123 (242)
T PLN02351 52 VLHPLLMVIGFILISGEAILVHRWLPGSRK-TKKSVHLWLQGLALASG----VFGIWTKFHGQDGIVANFYSLHSWM--- 123 (242)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhcccccch-HHHHHHHHHHHHHHHHH----HHHHHHHHhcccCCccchhHHHHHH---
Confidence 599999999999877666677765322222 26789988866666653 566666111111 135578899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC-C-CCCchhHHHHHHHHHHHHHHHHHhh
Q 036745 94 KRLILAMALILWAETGLVQKFIFLG-L-FRDQEALIVNFTGLLILLFGISVGL 144 (151)
Q Consensus 94 G~~i~~la~~~t~~lGl~ek~~~~~-~-~~~~e~~l~N~~gl~i~~fg~~v~~ 144 (151)
|+.+..+-. ...+.|+..-++... . .+.+---.==+.|+.+.++++....
T Consensus 124 Gl~tv~Lf~-lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~ 175 (242)
T PLN02351 124 GLICVSLFG-AQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAE 175 (242)
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999998433221 1 1111111223567777777766543
No 45
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=62.28 E-value=63 Score=24.10 Aligned_cols=84 Identities=19% Similarity=0.086 Sum_probs=54.3
Q ss_pred HHHHHHHhhhhhhhhhccC--Ccc----hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHH------------------
Q 036745 57 ITICLYGLQNFKSTVTVQP--PLS----NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQ------------------ 112 (151)
Q Consensus 57 ~t~~L~~lQ~~~G~~~l~P--~~~----~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~e------------------ 112 (151)
+..+++.+|...|+...+| ... .++...-+|... |++..++.+ .-...++.+
T Consensus 14 ~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~---G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T PF00033_consen 14 LNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSL---GIVFLALFL-LRILWRLFSRRFWKSDDIWFRQIPQYR 89 (188)
T ss_dssp HHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHH---HHHHHHHHH-HHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence 5566677788888887433 222 567788899999 999999988 888888887
Q ss_pred HHH--HhC-C-CCCchhHHHHHHHHHHHHHHHHHhh
Q 036745 113 KFI--FLG-L-FRDQEALIVNFTGLLILLFGISVGL 144 (151)
Q Consensus 113 k~~--~~~-~-~~~~e~~l~N~~gl~i~~fg~~v~~ 144 (151)
... ..+ . ++++.+.++.......++.-.+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~ 125 (188)
T PF00033_consen 90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGL 125 (188)
T ss_dssp TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 100 111 1 6667777777666655444444443
No 46
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=57.29 E-value=33 Score=25.77 Aligned_cols=62 Identities=26% Similarity=0.411 Sum_probs=45.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhhhc--------cccCCCCCchhHhHHHHHHHHHHHHhhhhhhh
Q 036745 9 TRRAQKTVHWLLHLIALLAGVIGIYAVFKF--------HHESGIPNMYTLHSWLGMITICLYGLQNFKST 70 (151)
Q Consensus 9 ~k~~~K~~H~~l~~~A~~~~viGl~avf~~--------h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~ 70 (151)
....+|..|+.+-....+..+.|+..-+.+ ........+.++|.+.+...++...+.....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~a~ 166 (182)
T PF01292_consen 97 YNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYAAL 166 (182)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999987631 12223346677888888888877776655444
No 47
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=57.18 E-value=23 Score=25.15 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHh
Q 036745 20 LHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGL 64 (151)
Q Consensus 20 l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~l 64 (151)
--..++.....|......-+++.+..+--..|.++|+.+..++..
T Consensus 12 G~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 12 GLLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778887766644444445667999999999999886
No 48
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=55.16 E-value=35 Score=24.26 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhh
Q 036745 23 IALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKS 69 (151)
Q Consensus 23 ~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G 69 (151)
-+++|.++.+-..+..++++......||=.|+=+.....-.+++++|
T Consensus 3 na~~c~~i~lrl~~yrr~garhr~~~s~lA~lli~~~~~~~i~~l~g 49 (83)
T PF05449_consen 3 NALICLAIALRLMFYRRNGARHRPWISWLAYLLIVAYGSVPIRILFG 49 (83)
T ss_pred HHHHHHHHHHHHheeecCCCccCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36788999999888888887777788888888888777777788777
No 49
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=53.22 E-value=12 Score=26.27 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhhhhhhh-ccC-Ccc-hhhhhhhhhhhcccchHHHHHHHH
Q 036745 54 LGMITICLYGLQNFKSTVT-VQP-PLS-NQLQNLHFKMCGNVGKRLILAMAL 102 (151)
Q Consensus 54 lGl~t~~L~~lQ~~~G~~~-l~P-~~~-~r~~~~p~H~~~~~~G~~i~~la~ 102 (151)
+|.+.+.++.++.+.|.=. ..+ ... ..++...+|+.. |+.+++.++
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~l---g~~~~~~~~ 49 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWL---GRLAFFLAL 49 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHH---HHHHHHHHH
Confidence 3778888888888877211 221 111 334566699999 999999888
No 50
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=52.89 E-value=49 Score=26.52 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=24.6
Q ss_pred CCCchhHhHHHHHHHHHHHHhhhhhhh
Q 036745 44 IPNMYTLHSWLGMITICLYGLQNFKST 70 (151)
Q Consensus 44 ~~~~ySlHSWlGl~t~~L~~lQ~~~G~ 70 (151)
.|-.-++|..+|.+.+.+|..|.+.|.
T Consensus 143 ~~~~R~lHi~lN~~~l~Lf~~q~itG~ 169 (175)
T PF13301_consen 143 RPWARRLHIYLNSLALLLFAWQAITGW 169 (175)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999986
No 51
>PRK11513 cytochrome b561; Provisional
Probab=51.61 E-value=31 Score=27.12 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=34.9
Q ss_pred HHHHHHHhhhhhhhhh-ccCCcchhhhhhhhhhhcccchHHHHHHHHHHHHHHHHH
Q 036745 57 ITICLYGLQNFKSTVT-VQPPLSNQLQNLHFKMCGNVGKRLILAMALILWAETGLV 111 (151)
Q Consensus 57 ~t~~L~~lQ~~~G~~~-l~P~~~~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ 111 (151)
.+..++..|+..|... ..|. +.+..++.+|..+ |..++++.+ .=...++.
T Consensus 15 l~a~li~~~~~~~~~~~~~~~-~~~~~~~~~H~s~---G~~vl~L~v-~Rl~~r~~ 65 (176)
T PRK11513 15 LVFLLVIVAYCAMEFRGFFPR-SDRPLINMIHVSC---GISILVLMV-VRLLLRLK 65 (176)
T ss_pred HHHHHHHHHHHHHHHHcccch-hhHHHHHHHHHHH---HHHHHHHHH-HHHHHHhC
Confidence 3445666677777665 5564 3456677899999 999999999 66555543
No 52
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=49.47 E-value=1.4e+02 Score=24.22 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcchhhhhhhhhhhcccchHHH
Q 036745 19 LLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLSNQLQNLHFKMCGNVGKRLI 97 (151)
Q Consensus 19 ~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~~r~~~~p~H~~~~~~G~~i 97 (151)
..|.+++.-.+--.+..+ .++-|-+-..+.--..|..++.++.++...+-.. ..+ ..+++++||.. |...
T Consensus 14 ~~~~~~l~p~~~l~~~~~--~~~lg~~p~~~~~~~tG~~Al~llll~l~l~pL~~l~~----~~~l~~~RR~L---Gl~a 84 (205)
T PRK05419 14 LLHLAGLLPLAWLVYLGA--TGGLGADPVKDIEHFTGLWALVFLLATLAVTPLRRLTG----QPLLIRTRRLL---GLWA 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHHHHHHHHH---HHHH
Confidence 444444444433333333 3344555566778889999999999998886644 333 23689999999 9999
Q ss_pred HHHHHHHHH
Q 036745 98 LAMALILWA 106 (151)
Q Consensus 98 ~~la~~~t~ 106 (151)
+..++ .=.
T Consensus 85 f~~a~-lH~ 92 (205)
T PRK05419 85 FFYAT-LHL 92 (205)
T ss_pred HHHHH-HHH
Confidence 99888 544
No 53
>PRK13673 hypothetical protein; Provisional
Probab=48.36 E-value=47 Score=25.24 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=57.4
Q ss_pred eeccCCCccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcchhhh
Q 036745 3 YKTIPGTRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLSNQLQ 82 (151)
Q Consensus 3 Yr~~~~~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~~r~~ 82 (151)
|-.++++++..|.+|..+-..=++..+.|++...+.= .+.|-+|..=..+|+.++.+.= . .+ ..|++
T Consensus 20 y~l~s~~~~~~ki~hMilRLfyil~iiTG~~l~~~~~--~~~~~l~~~K~l~gi~vIg~mE--m------~l---~r~kk 86 (118)
T PRK13673 20 YSLYSGGSKKAKILHMILRLFYILIIITGFWLLIRSF--GSNHMLYILKMLLGIIVIGLME--M------SL---AKRKK 86 (118)
T ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHHHH--H------HH---HHHHc
Confidence 3344554555679999999999999999987766532 3445556667777776655321 1 11 15566
Q ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHH
Q 036745 83 NLHFKMCGNVGKRLILAMALILWAETGL 110 (151)
Q Consensus 83 ~~p~H~~~~~~G~~i~~la~~~t~~lGl 110 (151)
-+|-+.++ +..+-++ + .|..+|+
T Consensus 87 ~k~~~~~~---~~~ii~l-v-lti~lG~ 109 (118)
T PRK13673 87 GKPTGGFW---WIFIIVL-V-LTILLGL 109 (118)
T ss_pred CCCcccHH---HHHHHHH-H-HHHHHHH
Confidence 67777777 5554443 3 6777786
No 54
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=44.21 E-value=89 Score=25.52 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCC------chhHhHHHHHHHHHHHHhhhhhhhhh
Q 036745 12 AQKTVHWLLHLIALLAGVIGIYAVFKFHHESG-IPN------MYTLHSWLGMITICLYGLQNFKSTVT 72 (151)
Q Consensus 12 ~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~-~~~------~ySlHSWlGl~t~~L~~lQ~~~G~~~ 72 (151)
..+..||..=..-+.+.+.|+......-...+ .+. ...+|-|.|.+...+..+-.+.|+..
T Consensus 17 ~~Ri~HW~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~g 84 (235)
T PRK10171 17 PVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFVG 84 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45778999988888889999876322211111 111 14689999999999988888877754
No 55
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=42.15 E-value=98 Score=22.96 Aligned_cols=51 Identities=29% Similarity=0.529 Sum_probs=39.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHH
Q 036745 9 TRRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICL 61 (151)
Q Consensus 9 ~k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L 61 (151)
+.+..|..|..+=..=++..+.|++...++ .++.|=+|..=..+|+.++.+
T Consensus 28 ~~k~~k~~~MilRl~YlliiisG~~L~~~~--~~~~~~l~~iK~l~gl~vI~l 78 (110)
T PF07457_consen 28 KTKKAKILHMILRLFYLLIIISGVWLFIRT--FAGNPMLYIIKMLLGLIVIGL 78 (110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999988754 556676777777777776654
No 56
>COG2322 Predicted membrane protein [Function unknown]
Probab=40.25 E-value=1.2e+02 Score=24.79 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcc-hhhhhhh---hhhh
Q 036745 14 KTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLS-NQLQNLH---FKMC 89 (151)
Q Consensus 14 K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~-~r~~~~p---~H~~ 89 (151)
-..-+....+++++..+|+..+-+-..++++.-|.+ =+-+-+..+.+|.---..|.-..|++.. .|..|.+ .|..
T Consensus 46 p~lnai~~~~s~~~llag~~~Ikrg~i~~Hk~aMlt-A~~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~ 124 (177)
T COG2322 46 PMLNAIFNSLSFIFLLAGWRLIKRGNIEKHKRAMLT-AFTLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHII 124 (177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHH
Confidence 456678889999999999999887544444444433 3445555556666554455545666665 7776655 5999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHH
Q 036745 90 GNVGKRLILAMALILWAETGLVQK 113 (151)
Q Consensus 90 ~~~~G~~i~~la~~~t~~lGl~ek 113 (151)
. -..+.-+++ -+..+|...+
T Consensus 125 L---A~i~vPLal-~al~~a~~~~ 144 (177)
T COG2322 125 L---AAINVPLAL-YALILAWKGL 144 (177)
T ss_pred H---HHHhhhHHH-HHHHHHhcch
Confidence 9 999999999 9999888776
No 57
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=39.00 E-value=49 Score=29.24 Aligned_cols=35 Identities=29% Similarity=0.215 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHhCC-CCCchhHHHH
Q 036745 94 KRLILAMALILWAETGLVQK-FIFLGL-FRDQEALIVN 129 (151)
Q Consensus 94 G~~i~~la~~~t~~lGl~ek-~~~~~~-~~~~e~~l~N 129 (151)
|+.+++.|.+.++.+|+.+. ..+ ++ +.+.|++.-+
T Consensus 165 Gi~lL~~al~~sa~mgiyqE~~Y~-kyGKh~~EalFyt 201 (330)
T KOG1583|consen 165 GIALLVFALLLSAYMGIYQETTYQ-KYGKHWKEALFYT 201 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCChHHHHHHH
Confidence 99999999999999999877 555 34 7777876543
No 58
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=38.96 E-value=1.7e+02 Score=24.46 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=34.7
Q ss_pred hHhHHHHHHHHHHHHhhhhhhhhhccCCcchhhhhhhhhhhcccchHHHHH
Q 036745 49 TLHSWLGMITICLYGLQNFKSTVTVQPPLSNQLQNLHFKMCGNVGKRLILA 99 (151)
Q Consensus 49 SlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~~r~~~~p~H~~~~~~G~~i~~ 99 (151)
......+.....+..+|.+.|..+.+-+.| ..+-..|... +.+++.
T Consensus 254 ~~~~~~~~~~~~ll~~Qv~lGi~~v~~~~p--~~l~~~H~~~---a~ll~~ 299 (302)
T PF02628_consen 254 RALRRLAVLLLALLLLQVLLGILTVLTGLP--VWLALLHQAG---AALLLA 299 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHH---HHHHHH
Confidence 557788888899999999999999544444 4566789888 665554
No 59
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=37.60 E-value=49 Score=20.05 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhee
Q 036745 125 ALIVNFTGLLILLFGISVGLTV 146 (151)
Q Consensus 125 ~~l~N~~gl~i~~fg~~v~~~~ 146 (151)
..++|++|.+. +..+|+|..
T Consensus 8 ~~lan~lG~~~--~~LIVlYH~ 27 (35)
T PF10215_consen 8 YTLANFLGVAA--MVLIVLYHF 27 (35)
T ss_dssp HHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHH
Confidence 57899999954 455566543
No 60
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=31.18 E-value=3.2e+02 Score=23.92 Aligned_cols=89 Identities=19% Similarity=0.109 Sum_probs=54.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCcchhhhhhhhhhh
Q 036745 10 RRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPLSNQLQNLHFKMC 89 (151)
Q Consensus 10 k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~~~r~~~~p~H~~ 89 (151)
......+|-..-...+......+ +..-++....++. -|.+.....+..+|...|+.+++.+.+ ..+-..|..
T Consensus 226 ~~~vq~~Hr~~a~~~~~~~l~~~--~~~~r~~~~~~~~----~~~~~~l~~lv~~Q~~~Gi~tv~~~vp--l~~a~~H~~ 297 (323)
T COG1612 226 PETVQFVHRLGAYLVFVAALLLL--VAALRRAPLTRAA----RTRAVVLLALVTLQAALGILTVLLGVP--LALALAHQA 297 (323)
T ss_pred chhhhhhHHHHHHHHHHHHHHHH--HHHHhccccchhH----HHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHH
Confidence 33444455444333333333332 2333333333433 256778889999999999999877776 337778998
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q 036745 90 GNVGKRLILAMALILWAETGL 110 (151)
Q Consensus 90 ~~~~G~~i~~la~~~t~~lGl 110 (151)
+ ..+++.+++ .-+..+.
T Consensus 298 ~---~~~ll~~~~-~~a~~~~ 314 (323)
T COG1612 298 A---ALVLLATAL-LHAWLLA 314 (323)
T ss_pred H---HHHHHHHHH-HHHHhhc
Confidence 8 777777777 5544443
No 61
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=31.08 E-value=1.8e+02 Score=22.61 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhh
Q 036745 11 RAQKTVHWLLHLIALLAGVIGIYAVF 36 (151)
Q Consensus 11 ~~~K~~H~~l~~~A~~~~viGl~avf 36 (151)
..+|..|+.+-.+.++..+.|+...+
T Consensus 114 ~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 114 PLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777777777777777777654
No 62
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=29.85 E-value=1.6e+02 Score=19.01 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc---C--CCCCchhHhHHHHHHHHHHHHh
Q 036745 15 TVHWLLHLIALLAGVIGIYAVFKFHHE---S--GIPNMYTLHSWLGMITICLYGL 64 (151)
Q Consensus 15 ~~H~~l~~~A~~~~viGl~avf~~h~~---~--~~~~~ySlHSWlGl~t~~L~~l 64 (151)
.+-..+-...+.+.+.|+..-+.-... . +.+....+|.|.|...+++..+
T Consensus 4 ~i~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 4 IINLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666664443322 1 2346667777777777666554
No 63
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=28.94 E-value=3.4e+02 Score=22.51 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHhCC-CCCchhHH-HHHHHHHHHHHHHHH
Q 036745 94 KRLILAMALILWAETGLVQK-FIFLGL-FRDQEALI-VNFTGLLILLFGISV 142 (151)
Q Consensus 94 G~~i~~la~~~t~~lGl~ek-~~~~~~-~~~~e~~l-~N~~gl~i~~fg~~v 142 (151)
|.++..+++...+.++..|+ .++ ++ ..+.|.+. .|..|+.+.+.....
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~-~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFK-KYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888778888887777 443 23 33345544 788888766655554
No 64
>PLN02810 carbon-monoxide oxygenase
Probab=28.10 E-value=3.7e+02 Score=22.71 Aligned_cols=126 Identities=13% Similarity=-0.001 Sum_probs=81.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhcc--CCcchhhhhhhhh
Q 036745 10 RRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQ--PPLSNQLQNLHFK 87 (151)
Q Consensus 10 k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~--P~~~~r~~~~p~H 87 (151)
|...-..|-.+..+++++.--=-..+|+.=.. .+......|-.+=..++++ .+.|+.+.| -.....+.++.+|
T Consensus 43 ~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~-~k~~~K~iH~~lh~~Al~l----~vvGl~Avf~~Hn~~~i~nlySLH 117 (231)
T PLN02810 43 KNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL-KKEVKKLIHLVLHAIALIL----GIFGICAAFKNHNESGIANLYSLH 117 (231)
T ss_pred CCceeeehHHHHHHHHHHHhhHHHHHhhcccc-ccchHHHHHHHHHHHHHHH----HHHHHHHHHHhccccCCCceeeHH
Confidence 34456799999999998877766777753221 2345678898887777765 345666633 2222446688899
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchhHHH-HHHHHHHHHHHHHHhh
Q 036745 88 MCGNVGKRLILAMALILWAETGLVQKFIFL-GLFRDQEALIV-NFTGLLILLFGISVGL 144 (151)
Q Consensus 88 ~~~~~~G~~i~~la~~~t~~lGl~ek~~~~-~~~~~~e~~l~-N~~gl~i~~fg~~v~~ 144 (151)
-+. |+.+..+-. ...+.|+..-++.. +.+..++-.-. =+.|+.+.+.++....
T Consensus 118 SWl---Gl~tv~Lf~-lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~ 172 (231)
T PLN02810 118 SWL---GIGIISLYG-IQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAA 172 (231)
T ss_pred HHH---HHHHHHHHH-HHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999 999999999 99999987743322 11121211111 2567777776665543
No 65
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=26.52 E-value=3.8e+02 Score=22.36 Aligned_cols=82 Identities=20% Similarity=0.119 Sum_probs=50.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhhhhhhccCCc-chhhhhhhhhh
Q 036745 10 RRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFKSTVTVQPPL-SNQLQNLHFKM 88 (151)
Q Consensus 10 k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~l~P~~-~~r~~~~p~H~ 88 (151)
+......|=.+=.+.-++.+.-....++.++.++.. -|.....+.+..+|...|-.+...+. + ....-.|-
T Consensus 64 ~~~~E~~HR~~~~~~gl~~l~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~Q~~lG~~~V~~~l~~--~~~~~~Hl 135 (302)
T PF02628_consen 64 HTWIEWGHRLLAGLVGLLILALAVWAWRKRRIRRRL------RWLALLALVLVILQGLLGAWTVLSGLVS--PYVVTLHL 135 (302)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch------HHHHHHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHH
Confidence 444556666555555555555555555433332222 36777888889999999988844442 2 22356788
Q ss_pred hcccchHHHHHHHH
Q 036745 89 CGNVGKRLILAMAL 102 (151)
Q Consensus 89 ~~~~~G~~i~~la~ 102 (151)
.. +.++|.+..
T Consensus 136 ~~---a~~~~~~l~ 146 (302)
T PF02628_consen 136 LL---ALLIFALLV 146 (302)
T ss_pred HH---HHHHHHHHH
Confidence 88 888887766
No 66
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=25.51 E-value=1.4e+02 Score=24.98 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchhHhHHHHHHHHHHHHhhhhh
Q 036745 12 AQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYTLHSWLGMITICLYGLQNFK 68 (151)
Q Consensus 12 ~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~ySlHSWlGl~t~~L~~lQ~~~ 68 (151)
..+..||..=..-+++.+.|+...+..-.....+....+|-|.|.+......+-.+.
T Consensus 72 ~~Rl~HW~~A~~fl~L~lTGl~i~~p~~~~~~~~~~~~iH~~~G~vf~~~~l~~~~~ 128 (261)
T PRK15006 72 AVRLWHWSNALLFVLLLLSGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLI 128 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999986643222222344568999998877665544444
No 67
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=24.26 E-value=3.7e+02 Score=21.43 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhccc----c-CCCCCchhHhHHHHHHHHHHHHhhhh
Q 036745 11 RAQKTVHWLLHLIALLAGVIGIYAVFKFHH----E-SGIPNMYTLHSWLGMITICLYGLQNF 67 (151)
Q Consensus 11 ~~~K~~H~~l~~~A~~~~viGl~avf~~h~----~-~~~~~~ySlHSWlGl~t~~L~~lQ~~ 67 (151)
...+..||+.=..-+++.+.|+...|..-. . .+.+.....|-+.|.+.++.+.+...
T Consensus 12 ~~~Ri~HW~~a~s~~~L~~TGl~i~~p~~~~~~~~~g~~~~~r~iH~~~g~i~~~~~~~~~~ 73 (211)
T PRK10639 12 APERINHWIVAFCFILAAVSGLGFFFPSFNWLMNILGTPQLARILHPFVGVVMFASFIIMFF 73 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999987553221 0 11122334799999998888877643
No 68
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=24.00 E-value=3.9e+02 Score=21.58 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhcccc-----CCCCCchhHhHHHHHHHHHHHHh
Q 036745 10 RRAQKTVHWLLHLIALLAGVIGIYAVFKFHHE-----SGIPNMYTLHSWLGMITICLYGL 64 (151)
Q Consensus 10 k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~-----~~~~~~ySlHSWlGl~t~~L~~l 64 (151)
+...+..||+.=..-++|++.|++..+-.-.- .+...--.+|-+.|.+..+.+..
T Consensus 11 ~~~~Ri~HW~~a~s~i~L~~TGl~i~~p~~~~~~~~~g~~~~~r~iH~~~g~vf~~~~~~ 70 (217)
T PRK10179 11 KFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMF 70 (217)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999997753211 11122234899999887655544
No 69
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=23.69 E-value=99 Score=24.09 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCC---------------CchhHhHHHHH
Q 036745 19 LLHLIALLAGVIGIYAVFKFHHESGIP---------------NMYTLHSWLGM 56 (151)
Q Consensus 19 ~l~~~A~~~~viGl~avf~~h~~~~~~---------------~~ySlHSWlGl 56 (151)
.+-+.+..+..+|.+.-+..+.....| -|.|.|||==+
T Consensus 40 aL~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI~dgAGe~GfFsP~SwWPl 92 (137)
T PF12270_consen 40 ALVLSGGLALMIGFYLRFTARRIGPRPEDREDAEIADGAGELGFFSPHSWWPL 92 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCCcCcCCCccHhHH
Confidence 345566777888888888776643222 68899998433
No 70
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=23.21 E-value=4e+02 Score=21.50 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhhhhhhh---ccCCcc---------hh-----hhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Q 036745 53 WLGMITICLYGLQNFKSTVT---VQPPLS---------NQ-----LQNLHFKMCGNVGKRLILAMALILWAETGLVQKFI 115 (151)
Q Consensus 53 WlGl~t~~L~~lQ~~~G~~~---l~P~~~---------~r-----~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek~~ 115 (151)
.+|-.+...|.+|.+.|++. ..|... .| .-+...|+.. .-..+++.. .=. ..+++
T Consensus 24 ~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~g---as~~~~~~~-lH~----~r~~~ 95 (200)
T cd00284 24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANG---ASMFFLMLY-LHI----FRGLY 95 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHH---HHHHHHHHH-HHH----HHHHH
Confidence 47999999999999999997 347643 11 1234568777 555554444 222 22233
Q ss_pred HhCCCCCchhHHHHHHHHHHHHHHHHH
Q 036745 116 FLGLFRDQEALIVNFTGLLILLFGISV 142 (151)
Q Consensus 116 ~~~~~~~~e~~l~N~~gl~i~~fg~~v 142 (151)
...++.|.|.. =..|+++.++-+..
T Consensus 96 ~gsY~~pre~~--W~~G~~l~~l~~~~ 120 (200)
T cd00284 96 YGSYKKPRELT--WVIGVILLLLTMAT 120 (200)
T ss_pred HHHhcchhHHH--HHHHHHHHHHHHHH
Confidence 32235455553 33455444444433
No 71
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=23.00 E-value=3e+02 Score=20.09 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCc-hhHhHHHHHHHHHHHHhhhhhh
Q 036745 20 LHLIALLAGVIGIYAVFKFHHESGIPNM-YTLHSWLGMITICLYGLQNFKS 69 (151)
Q Consensus 20 l~~~A~~~~viGl~avf~~h~~~~~~~~-ySlHSWlGl~t~~L~~lQ~~~G 69 (151)
+-.++-+.+++|-.-||. |-.+|.||. .+.=+|.|-+....-..+.+-.
T Consensus 47 ~yaI~aVvglIGai~VY~-k~~~Gd~dv~k~i~~w~GaciFli~~a~~l~a 96 (98)
T PF13572_consen 47 MYAIGAVVGLIGAIRVYI-KWNNGDQDVKKSIMSWFGACIFLIVAATVLPA 96 (98)
T ss_pred HHHHHHHHHHHHHHHHHH-hhccCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666665 445555554 4588999988776665555433
No 72
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.87 E-value=2.9e+02 Score=19.66 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=23.7
Q ss_pred hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 036745 79 NQLQNLHFKMCGNVGKRLILAMALILWAETGLVQK 113 (151)
Q Consensus 79 ~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~ek 113 (151)
.|++.-..||.. |++-..+.+ .++++|+.=.
T Consensus 1 lR~k~~~~HR~l---Grvyv~~~~-~~a~sa~~i~ 31 (103)
T PF10067_consen 1 LRRKGPRLHRWL---GRVYVAAML-ISALSALFIA 31 (103)
T ss_pred CCCCcccHHHhh---hHHHHHHHH-HHHHHHHHHH
Confidence 367777889999 988888888 8888886443
No 73
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=21.84 E-value=4.8e+02 Score=22.38 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=53.5
Q ss_pred CchhHhHHHHHHHHHHHHhhhhhhhhh-ccCCcc-h-hhhhhhhhhhcccchH--------HHHHHHHHHHHHHHHHHHH
Q 036745 46 NMYTLHSWLGMITICLYGLQNFKSTVT-VQPPLS-N-QLQNLHFKMCGNVGKR--------LILAMALILWAETGLVQKF 114 (151)
Q Consensus 46 ~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~~~-~-r~~~~p~H~~~~~~G~--------~i~~la~~~t~~lGl~ek~ 114 (151)
-+.=+||-.|++ +.+|..+=+.=..+ +.-+.. + -++.+.-=-++..|+. ++++.-+ .=+..|+. |
T Consensus 23 ~lD~~qSltGvi-LglFl~~Hm~~~ssil~G~~afn~va~f~E~~~~~~~g~p~~~sl~~~~I~l~~l-~Ha~lalr-k- 98 (258)
T PRK13553 23 KLDFLQSATGLF-LGLFMWAHMFFVSTILISDDAMYKVAKFFEGSFFFKAGEPALVSFVAAGVILIFV-VHAFLAMR-K- 98 (258)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHhhCccccCCcchhHHHHHHHHHHHHH-HHHHHHHh-h-
Confidence 445599999999 88887765554444 432222 2 2333321112223333 4566666 66777776 3
Q ss_pred HHhCCCCCchhHHHH-----------------HHHHHHHHHHHHHhheee
Q 036745 115 IFLGLFRDQEALIVN-----------------FTGLLILLFGISVGLTVV 147 (151)
Q Consensus 115 ~~~~~~~~~e~~l~N-----------------~~gl~i~~fg~~v~~~~~ 147 (151)
.|.+..+-..+-| ++|+.+++|+..-+|...
T Consensus 99 --~P~n~~q~~~~r~h~~~m~H~DT~lW~~Q~iTG~ilf~~~~~Hl~~i~ 146 (258)
T PRK13553 99 --FPINYRQYQIFRTHKHLMKHGDTSLWFIQAFTGFAMFFLASVHLYVML 146 (258)
T ss_pred --CCCCHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1112223333333 389999999988776543
No 74
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=21.05 E-value=3.8e+02 Score=20.41 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=57.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCchh-------------HhHHHHHHHHHHHHhhhhhhhhhccCC
Q 036745 10 RRAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIPNMYT-------------LHSWLGMITICLYGLQNFKSTVTVQPP 76 (151)
Q Consensus 10 k~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~~~yS-------------lHSWlGl~t~~L~~lQ~~~G~~~l~P~ 76 (151)
|+.+...|--.+..|+.++.+=+..=...|...|..+|-. .|.-+-..++.+-......|+
T Consensus 27 r~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~------ 100 (133)
T PF04238_consen 27 RRGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRAL------ 100 (133)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 5667788999999988887766555444444443322222 355555555555554444444
Q ss_pred cchhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 036745 77 LSNQLQNLHFKMCGNVGKRLILAMALILWAETGLVQ 112 (151)
Q Consensus 77 ~~~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl~e 112 (151)
++-..-||=. |..++..=+ .++.||..-
T Consensus 101 ----~~~~~~Hrki---~r~t~piWl-yvsvTGvvV 128 (133)
T PF04238_consen 101 ----RGRFTRHRKI---GRWTFPIWL-YVSVTGVVV 128 (133)
T ss_pred ----HcChHHHHHH---HHHHHHHHH-HHHHHHHHH
Confidence 2244568888 999888888 888888753
No 75
>PLN02594 phosphatidate cytidylyltransferase
Probab=20.58 E-value=6.1e+02 Score=22.60 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=42.7
Q ss_pred hccccCCCCCchhHhH-HHHHHHHHHHHhhhhhhhhh-ccCCcc----hhhhhhhhhhhcccchHHHHHHHHHHHHHHHH
Q 036745 37 KFHHESGIPNMYTLHS-WLGMITICLYGLQNFKSTVT-VQPPLS----NQLQNLHFKMCGNVGKRLILAMALILWAETGL 110 (151)
Q Consensus 37 ~~h~~~~~~~~ySlHS-WlGl~t~~L~~lQ~~~G~~~-l~P~~~----~r~~~~p~H~~~~~~G~~i~~la~~~t~~lGl 110 (151)
..+++++.|-+.|+-= |++.+..-+|+ +.+.-.+. ..+... .-+.+..+|++. -...++.+. +.-++.+
T Consensus 13 ~~~~~~~lp~~~~l~Wyf~~~~~~~~yg-~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~i---sf~ly~~gf-v~FvlsL 87 (342)
T PLN02594 13 KAREERQLPGFRLLNWHFFFTAMFFVYG-RFLKQQLVNTVTSDKFLYRLVSGLIKYHMAI---CYSLYIAGF-VWFILTL 87 (342)
T ss_pred hhhhhhCCCchhhHHHHHHHHHHHHHhh-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHH
Confidence 3355678888887531 44444433333 33333333 333222 123347899999 999999988 7777777
Q ss_pred HHH
Q 036745 111 VQK 113 (151)
Q Consensus 111 ~ek 113 (151)
..+
T Consensus 88 ~k~ 90 (342)
T PLN02594 88 KKG 90 (342)
T ss_pred Hhc
Confidence 755
No 76
>COG4244 Predicted membrane protein [Function unknown]
Probab=20.27 E-value=3.4e+02 Score=21.67 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036745 14 KTVHWLLHLIALLAGVIGIYA 34 (151)
Q Consensus 14 K~~H~~l~~~A~~~~viGl~a 34 (151)
-.-|.....+++++++.+++-
T Consensus 87 ~wh~~lG~il~~~la~~~~~r 107 (160)
T COG4244 87 EWHHVLGNILLIVLAILTAWR 107 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544
Done!