Query 036745
Match_columns 151
No_of_seqs 118 out of 339
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gd3_A NI/Fe-hydrogenase 1 B-t 86.1 4.9 0.00017 31.3 9.0 61 11-71 16-83 (235)
2 1kqf_C FDH-N gamma, formate de 85.6 4.3 0.00015 31.0 8.3 65 11-76 12-82 (217)
3 2lat_A Dolichyl-diphosphooligo 45.9 16 0.00053 21.7 2.5 19 125-145 8-26 (37)
4 1rkl_A Dolichyl-diphosphooligo 40.4 33 0.0011 20.2 3.3 21 124-146 7-27 (36)
5 1kqf_C FDH-N gamma, formate de 18.1 1.2E+02 0.0041 22.7 3.8 45 58-106 21-72 (217)
6 4gd3_A NI/Fe-hydrogenase 1 B-t 12.9 2.6E+02 0.009 21.2 4.6 24 12-35 128-151 (235)
7 4ain_A Glycine betaine transpo 12.2 3.3E+02 0.011 24.4 5.5 28 13-41 144-171 (539)
8 2lom_A HIG1 domain family memb 13.4 61 0.0021 22.5 0.0 27 9-35 54-82 (93)
9 3sjr_A Uncharacterized protein 9.9 3.8E+02 0.013 20.6 4.4 31 104-134 98-128 (175)
10 3bo0_B Preprotein translocase 9.7 3.5E+02 0.012 16.6 3.9 31 7-37 23-53 (65)
No 1
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=86.07 E-value=4.9 Score=31.29 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC--C-----chhHhHHHHHHHHHHHHhhhhhhhh
Q 036745 11 RAQKTVHWLLHLIALLAGVIGIYAVFKFHHESGIP--N-----MYTLHSWLGMITICLYGLQNFKSTV 71 (151)
Q Consensus 11 ~~~K~~H~~l~~~A~~~~viGl~avf~~h~~~~~~--~-----~ySlHSWlGl~t~~L~~lQ~~~G~~ 71 (151)
...+..||..=.+-+.+.+.|....+......+-+ + .+.+|-++|.+.+.+..+-.+.++.
T Consensus 16 ~~~R~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 16 APVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999887777777888887754332111211 1 3469999999999999998888876
No 2
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=85.55 E-value=4.3 Score=30.98 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhccc----cC-CCCCchhHhHHHHHHHHHHHHhhhhhhhhh-ccCC
Q 036745 11 RAQKTVHWLLHLIALLAGVIGIYAVFKFHH----ES-GIPNMYTLHSWLGMITICLYGLQNFKSTVT-VQPP 76 (151)
Q Consensus 11 ~~~K~~H~~l~~~A~~~~viGl~avf~~h~----~~-~~~~~ySlHSWlGl~t~~L~~lQ~~~G~~~-l~P~ 76 (151)
...+..||+.=..-+.+.+.|+...+.... .. +....+.+|-++|.+.+.+...-.+ .... ..|.
T Consensus 12 ~~~R~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~ 82 (217)
T 1kqf_C 12 FIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFV-RFVHHNIPD 82 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCC
Confidence 346889999888888888888876432110 01 1123678999999999988876432 2223 4554
No 3
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=45.85 E-value=16 Score=21.70 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhe
Q 036745 125 ALIVNFTGLLILLFGISVGLT 145 (151)
Q Consensus 125 ~~l~N~~gl~i~~fg~~v~~~ 145 (151)
..++|++|..+.+ .+|+|.
T Consensus 8 ~~lan~lG~~~~~--LIVlYH 26 (37)
T 2lat_A 8 AIFANMLGVSLFL--LVVLYH 26 (37)
T ss_dssp HHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHH
Confidence 5789999996554 445543
No 4
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=40.39 E-value=33 Score=20.16 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhee
Q 036745 124 EALIVNFTGLLILLFGISVGLTV 146 (151)
Q Consensus 124 e~~l~N~~gl~i~~fg~~v~~~~ 146 (151)
=..++|++|+.+. ..+|+|..
T Consensus 7 L~~lan~lG~~~~--~LIvlYH~ 27 (36)
T 1rkl_A 7 LNSLAITFGIVMM--TLIVIYHA 27 (36)
T ss_dssp GGHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHH
Confidence 3689999999654 45555543
No 5
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=18.09 E-value=1.2e+02 Score=22.66 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=28.8
Q ss_pred HHHHHHhhhhhhhhhccCCcc-------hhhhhhhhhhhcccchHHHHHHHHHHHH
Q 036745 58 TICLYGLQNFKSTVTVQPPLS-------NQLQNLHFKMCGNVGKRLILAMALILWA 106 (151)
Q Consensus 58 t~~L~~lQ~~~G~~~l~P~~~-------~r~~~~p~H~~~~~~G~~i~~la~~~t~ 106 (151)
...++..+++.|+...+|..+ .+.....+|..+ |.+.+++.+ .-.
T Consensus 21 ~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~---G~~~~~l~~-~r~ 72 (217)
T 1kqf_C 21 VVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFF---GIAIFVALM-FMF 72 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHH---HHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHH---HHHHHHHHH-HHH
Confidence 334445556777765455421 344577899999 999987766 533
No 6
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=12.91 E-value=2.6e+02 Score=21.17 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 036745 12 AQKTVHWLLHLIALLAGVIGIYAV 35 (151)
Q Consensus 12 ~~K~~H~~l~~~A~~~~viGl~av 35 (151)
.+|..|+.+-.+.++..+.|+...
T Consensus 128 ~~~~~~~~l~~ll~~~~ltG~~~~ 151 (235)
T 4gd3_A 128 IAQAAMFGYFLMSVFMIITGFALY 151 (235)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888889999998753
No 7
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=12.25 E-value=3.3e+02 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036745 13 QKTVHWLLHLIALLAGVIGIYAVFKFHHE 41 (151)
Q Consensus 13 ~K~~H~~l~~~A~~~~viGl~avf~~h~~ 41 (151)
....||.+|.=|+- +++|+...|-.+++
T Consensus 144 ~t~fHWG~~~WAiY-av~glalaY~~yrk 171 (539)
T 4ain_A 144 TTMFHWTLHPWAIY-AIVGLAIAYSTFRV 171 (539)
T ss_dssp HHHHHHSHHHHHHH-HHHHHHHHCCCCCT
T ss_pred HHHHhcChHHHHHH-HHHHHHHHHHHhcC
Confidence 45789999999986 68899988876644
No 8
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=13.42 E-value=61 Score=22.52 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=21.4
Q ss_pred CccchHHHHH--HHHHHHHHHHHHHHHHh
Q 036745 9 TRRAQKTVHW--LLHLIALLAGVIGIYAV 35 (151)
Q Consensus 9 ~k~~~K~~H~--~l~~~A~~~~viGl~av 35 (151)
++..+|.+|+ ..|.+++++.+.|.+.-
T Consensus 54 ~~~sqklmr~RV~aQg~tV~al~~g~~ys 82 (93)
T 2lom_A 54 TKMSIHLIHMRVAAQGFVVGAMTVGMGYS 82 (93)
Confidence 6778888887 78888888888887643
No 9
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=9.86 E-value=3.8e+02 Score=20.63 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 036745 104 LWAETGLVQKFIFLGLFRDQEALIVNFTGLL 134 (151)
Q Consensus 104 ~t~~lGl~ek~~~~~~~~~~e~~l~N~~gl~ 134 (151)
++-.|++.|.|-+.+++.+.|..+-+|+.++
T Consensus 98 VsfaT~FF~~yq~qhPd~~~ee~L~~Fm~lI 128 (175)
T 3sjr_A 98 LLGMEILMELYRQQHPDWTAPAIRQAFAPLA 128 (175)
T ss_dssp HHHHHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5556677787777666888999999888763
No 10
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=9.65 E-value=3.5e+02 Score=16.57 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=20.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 036745 7 PGTRRAQKTVHWLLHLIALLAGVIGIYAVFK 37 (151)
Q Consensus 7 ~~~k~~~K~~H~~l~~~A~~~~viGl~avf~ 37 (151)
|.+|+.++-.=-.++..++.+.++|+.+.+-
T Consensus 23 ptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i 53 (65)
T 3bo0_B 23 PTRKPTKDEYLAVAKVTALGISLLGIIGYII 53 (65)
T ss_dssp TTTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4566666666666677777777777766553
Done!