BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036746
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 87/195 (44%), Gaps = 3/195 (1%)
Query: 73 RYQRVTILDLQNLKLVGTLSPHIGNLSF-LQKLDLRNNSFTNAIPPQIGHLRR--LQILY 129
+ + + +LDL + G L + NLS L LDL +N+F+ I P + + LQ LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPX 189
LQ N F G+IP + SNCS L+ + L+ N+L G IPS GSLSKL+ L N L G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFD 249
G IP G IP I + ++
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 250 VGSTYIEGEMPLDLG 264
+ + G +P +LG
Sbjct: 521 LSNNSFSGNIPAELG 535
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 63/126 (50%)
Query: 87 LVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNC 146
L GT+ +G+LS L+ L L N IP ++ +++ L+ L L N GEIP+ SNC
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXXXX 206
+NL +SL+ N L G+IP G L L L + N+ GNIP
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 207 FYGSIP 212
F G+IP
Sbjct: 550 FNGTIP 555
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 4/189 (2%)
Query: 70 CSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILY 129
C + L LQN G + P + N S L L L N + IP +G L +L+ L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPX 189
L +N +GEIP L + L N L G+IPS + + L ++S + N L G IP
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFD 249
F G+IP G + GTIP ++F Q+
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGK 564
Query: 250 VGSTYIEGE 258
+ + +I G+
Sbjct: 565 IAANFIAGK 573
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 38 LLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQR---VTILDLQNLKLVGTLSPH 94
LLEF+ I ++ L L + N + YG SP + + LD+ L G +
Sbjct: 593 LLEFQG-IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154
IG++ +L L+L +N + +IP ++G LR L IL L N DG IP + S + L + L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 155 ALNHLVGKIPS--EFGSLSKLQFLS 177
+ N+L G IP +F + +FL+
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 5/183 (2%)
Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
L+ LD+ +N+F+ IP +G LQ L + N G+ + S C+ L +++++ N V
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 161 GKIPSEFGSLSKLQFLSTTANNLIGNIPX-XXXXXXXXXXXXXXXXXFYGSIPDTFGGLK 219
G IP L LQ+LS N G IP FYG++P FG
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 220 XXXXXXXXXXXXXGTIP-PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278
G +P ++ + ++ D+ GE+P L +L ++ N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 279 QFT 281
F+
Sbjct: 379 NFS 381
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 87/221 (39%), Gaps = 32/221 (14%)
Query: 80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI 139
LD+ KL G S I + L+ L++ +N F IPP L+ LQ L L N F GEI
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 140 PASTSN-CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXX 198
P S C L + L+ NH G +P FGS S L+ L+ ++NN G +P
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 199 XXXXXX-XXFYGSIPDTFGGLKXXXXXXXXXXXX-------------------------- 231
F G +P++ L
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 232 -XGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLR 271
G IPP++ N S + + + Y+ G +P LG +L LR
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLR 445
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 89 GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSN 148
G SP N + LD+ N + IP +IG + L IL L N G IP +
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 149 LLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP 188
L ++ L+ N L G+IP +L+ L + + NNL G IP
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 78/194 (40%), Gaps = 5/194 (2%)
Query: 75 QRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN 133
+ + L L K G + + G L LDL N F A+PP G L+ L L N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 134 SFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLS-KLQFLSTTANNLIGNI--PX 189
+F GE+P T L V+ L+ N G++P +LS L L ++NN G I
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFD 249
F G IP T GTIP S+ ++S ++
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 250 VGSTYIEGEMPLDL 263
+ +EGE+P +L
Sbjct: 449 LWLNMLEGEIPQEL 462
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 47/129 (36%)
Query: 85 LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTS 144
L+ G S + LS ++ + + P + + L + N G IP
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 145 NCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXX 204
+ L +++L N + G IP E G L L L ++N L G IP
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 205 XXFYGSIPD 213
G IP+
Sbjct: 714 NNLSGPIPE 722
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 35/223 (15%)
Query: 64 QWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP----PQI 119
+W G R + + IL L N G + +G+ L LDL N F IP Q
Sbjct: 508 KWIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 120 GHLRR-----LQILYLQINSFDGEIPASTSNCSNLL----VVSLALNHLVGKIPSE---- 166
G + + +Y++ + E + NLL + S LN L + P
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGA----GNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 167 ---------FGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGG 217
F + + FL + N L G IP GSIPD G
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678
Query: 218 LKXXXXXXXXXXXXXGTIPPSIFNISSIQTFDVGSTYIEGEMP 260
L+ G IP ++ ++ + D+ + + G +P
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 87/195 (44%), Gaps = 3/195 (1%)
Query: 73 RYQRVTILDLQNLKLVGTLSPHIGNLSF-LQKLDLRNNSFTNAIPPQIGHLRR--LQILY 129
+ + + +LDL + G L + NLS L LDL +N+F+ I P + + LQ LY
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPX 189
LQ N F G+IP + SNCS L+ + L+ N+L G IPS GSLSKL+ L N L G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFD 249
G IP G IP I + ++
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 250 VGSTYIEGEMPLDLG 264
+ + G +P +LG
Sbjct: 518 LSNNSFSGNIPAELG 532
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 63/126 (50%)
Query: 87 LVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNC 146
L GT+ +G+LS L+ L L N IP ++ +++ L+ L L N GEIP+ SNC
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXXXX 206
+NL +SL+ N L G+IP G L L L + N+ GNIP
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 207 FYGSIP 212
F G+IP
Sbjct: 547 FNGTIP 552
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 4/189 (2%)
Query: 70 CSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILY 129
C + L LQN G + P + N S L L L N + IP +G L +L+ L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPX 189
L +N +GEIP L + L N L G+IPS + + L ++S + N L G IP
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFD 249
F G+IP G + GTIP ++F Q+
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGK 561
Query: 250 VGSTYIEGE 258
+ + +I G+
Sbjct: 562 IAANFIAGK 570
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 38 LLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQR---VTILDLQNLKLVGTLSPH 94
LLEF+ I ++ L L + N + YG SP + + LD+ L G +
Sbjct: 590 LLEFQG-IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154
IG++ +L L+L +N + +IP ++G LR L IL L N DG IP + S + L + L
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 155 ALNHLVGKIPS--EFGSLSKLQFLS 177
+ N+L G IP +F + +FL+
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 5/183 (2%)
Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
L+ LD+ +N+F+ IP +G LQ L + N G+ + S C+ L +++++ N V
Sbjct: 199 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 161 GKIPSEFGSLSKLQFLSTTANNLIGNIPX-XXXXXXXXXXXXXXXXXFYGSIPDTFGGLK 219
G IP L LQ+LS N G IP FYG++P FG
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 220 XXXXXXXXXXXXXGTIP-PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278
G +P ++ + ++ D+ GE+P L +L ++ N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 279 QFT 281
F+
Sbjct: 376 NFS 378
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 87/221 (39%), Gaps = 32/221 (14%)
Query: 80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI 139
LD+ KL G S I + L+ L++ +N F IPP L+ LQ L L N F GEI
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 140 PASTSN-CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXX 198
P S C L + L+ NH G +P FGS S L+ L+ ++NN G +P
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 199 XXXXXX-XXFYGSIPDTFGGLKXXXXXXXXXXXX-------------------------- 231
F G +P++ L
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 232 -XGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLR 271
G IPP++ N S + + + Y+ G +P LG +L LR
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLR 442
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 89 GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSN 148
G SP N + LD+ N + IP +IG + L IL L N G IP +
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 149 LLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP 188
L ++ L+ N L G+IP +L+ L + + NNL G IP
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 78/194 (40%), Gaps = 5/194 (2%)
Query: 75 QRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN 133
+ + L L K G + + G L LDL N F A+PP G L+ L L N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 134 SFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLS-KLQFLSTTANNLIGNI--PX 189
+F GE+P T L V+ L+ N G++P +LS L L ++NN G I
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFD 249
F G IP T GTIP S+ ++S ++
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 250 VGSTYIEGEMPLDL 263
+ +EGE+P +L
Sbjct: 446 LWLNMLEGEIPQEL 459
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 47/129 (36%)
Query: 85 LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTS 144
L+ G S + LS ++ + + P + + L + N G IP
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 145 NCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXX 204
+ L +++L N + G IP E G L L L ++N L G IP
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 205 XXFYGSIPD 213
G IP+
Sbjct: 711 NNLSGPIPE 719
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 35/223 (15%)
Query: 64 QWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP----PQI 119
+W G R + + IL L N G + +G+ L LDL N F IP Q
Sbjct: 505 KWIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 120 GHLRR-----LQILYLQINSFDGEIPASTSNCSNLL----VVSLALNHLVGKIPSE---- 166
G + + +Y++ + E + NLL + S LN L + P
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGA----GNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 167 ---------FGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGG 217
F + + FL + N L G IP GSIPD G
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 218 LKXXXXXXXXXXXXXGTIPPSIFNISSIQTFDVGSTYIEGEMP 260
L+ G IP ++ ++ + D+ + + G +P
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQ--WYGVTCSPRYQ--RVTILDLQNLK 86
N D+ ALL+ K + N L SW + C W GV C Q RV LDL L
Sbjct: 4 NPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 87 L---------------------------VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI 119
L VG + P I L+ L L + + + + AIP +
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 120 GHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKL-QFLST 178
++ L L N+ G +P S S+ NL+ ++ N + G IP +GS SKL ++
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 179 TANNLIGNIP 188
+ N L G IP
Sbjct: 182 SRNRLTGKIP 191
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 86 KLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS--FD-GEIPAS 142
+L G + P NL+ L +DL N G + Q ++L NS FD G++ S
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 143 TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP 188
NL + L N + G +P L L L+ + NNL G IP
Sbjct: 244 ----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQI 127
LDL+N ++ GTL + L FL L++ N+ I PQ G+L+R +
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDV 295
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI 139
LDL NL++ +S +I FL +L L NS T +P +I +L L++L L N +
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 140 PASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL 183
PA +C L +++V +P EFG+L LQFL N L
Sbjct: 286 PAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 64 QWYGVTCSPRYQRVTILDLQNLK-------LVGTLSPHIGNLSFLQKLDLRNNSFTNAIP 116
+W G+ P +I +LQNLK + L P I +L L++LDLR + P
Sbjct: 191 EWTGIRSLP----ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246
Query: 117 PQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
P G L+ L L+ +CSNLL + L ++ L
Sbjct: 247 PIFGGRAPLKRLILK-------------DCSNLLTLPLDIHRLT 277
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 66 YGVTCSPRYQRVTILDLQNLKLVGTLSPHI---GNLSFLQKLDLRNNSFTNAIPPQIGHL 122
+G S Y+ + ++++N + GT H+ +S LD NN T+ + GHL
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347
Query: 123 RRLQILYLQINSF 135
L+ L LQ+N
Sbjct: 348 TELETLILQMNQL 360
>pdb|1BD7|A Chain A, Circularly Permuted Bb2-Crystallin
pdb|1BD7|B Chain B, Circularly Permuted Bb2-Crystallin
Length = 176
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 75 QRVTILDLQNLKLVGTLSPHIGNLSFL-QKLDLRNNSFTNAIPPQIGHLRRL-------Q 126
++V+ + +Q+ VG P L +L +K D ++NS A PQ+ +RR+ +
Sbjct: 34 EKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDNSDFGAPHPQVQSVRRIRDMQGNPK 93
Query: 127 ILYLQINSFDGEIPASTSNCSNLLVVSLA 155
I+ + +F G + C NL +
Sbjct: 94 IIIFEQENFQGHSHELSGPCPNLKETGME 122
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 95 IGNLSFLQKLDLRNNSF--TNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV 152
+ L LQKLDL ++ ++ Q+ +LR LQ L L N G + C L ++
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 153 SLALNHLVGKIP-SEFGSLSKLQFLS 177
+A HL K P S F +L L+ L+
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLN 430
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 78 TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
+LDLQN K+ NL L L L NN + P L +L+ LYL N
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 138 EIPAS 142
E+P
Sbjct: 114 ELPEK 118
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 78 TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
+LDLQN K+ NL L L L NN + P L +L+ LYL N
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 138 EIPAS 142
E+P
Sbjct: 114 ELPEK 118
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 93 PHIGNLSFLQKLDLRNNSFTN--AIPPQI-----GHLRRLQILYLQINSFDGEIPASTSN 145
P + N SFL+ +D+ NNS +PP + G+ + ++ LQ F I A ++
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 206
Query: 146 CSNLLVVSLALNHLVG--KIPSEFGSLSKLQFLST--TANNLIGNIP 188
L + L+L +V I E L L FL+T NNL+ +P
Sbjct: 207 LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 253
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 63 CQWYGVTCSPRY--QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG 120
C G+ P+ T+LDLQN + L L L L NN +
Sbjct: 40 CSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS 99
Query: 121 HLRRLQILYLQINSFDGEIPAS 142
LR+LQ LY+ N EIP +
Sbjct: 100 PLRKLQKLYISKNHL-VEIPPN 120
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 98 LSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSF----DGEIPASTSNCSNLLVV 152
LS LQ L L N+++ N++PP + HL L+ L L N ++PA NL ++
Sbjct: 479 LSHLQVLYL-NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEIL 531
Query: 153 SLALNHLVGKIPSEFGSLSKL 173
++ N L+ P F SLS L
Sbjct: 532 DISRNQLLAPNPDVFVSLSVL 552
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 78 TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
T+++ QN++L + G + Q+L L NN T P HL LQ LY N
Sbjct: 15 TLVNCQNIRLASVPA---GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 138 EIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFL 176
IP + L + L NHL F +L L +
Sbjct: 72 -IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 101 LQKLDLRNNSFTNAIPPQIGH--LR---RLQILYLQ---INSFDGEIPASTSNCSNLLVV 152
++ LDL N T IGH LR LQ+L L+ IN+ +G+ S + +L
Sbjct: 54 MKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL--- 105
Query: 153 SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN 186
L+ NHL S FG LS L++L NL+GN
Sbjct: 106 DLSDNHLSSLSSSWFGPLSSLKYL-----NLMGN 134
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 75 QRVTILDLQ--NLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
+++ LD Q NLK + S + L L LD+ + A L L++L +
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 133 NSF-DGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN 182
NSF + +P + NL + L+ L P+ F SLS LQ L+ + NN
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 101 LQKLDLRNNSFTNAIPPQIGH--LR---RLQILYLQ---INSFDGEIPASTSNCSNLLVV 152
++ LDL N T IGH LR LQ+L L+ IN+ +G+ S + +L
Sbjct: 28 MKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL--- 79
Query: 153 SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN 186
L+ NHL S FG LS L++L NL+GN
Sbjct: 80 DLSDNHLSSLSSSWFGPLSSLKYL-----NLMGN 108
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 75 QRVTILDLQ--NLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
+++ LD Q NLK + S + L L LD+ + A L L++L +
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 133 NSF-DGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN 182
NSF + +P + NL + L+ L P+ F SLS LQ L+ + NN
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
++ LDL NN T + LQ L L N + S S+ +L + L+ N+L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 161 GKIPSEFGSLSKLQFLSTTANNLIGN 186
S F LS L FL NL+GN
Sbjct: 114 NLSSSWFKPLSSLTFL-----NLLGN 134
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 122 LRRLQILYLQINSFDGE-IPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180
L L++L + NSF +P + NL + L+ L P+ F SLS LQ L+ +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 181 NN 182
NN
Sbjct: 209 NN 210
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 104 LDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG--EIPASTSNCSNLLVVSLALNHL 159
L+ N FT+++ L+RLQ L LQ N ++ T N S+L + ++LN L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,147,173
Number of Sequences: 62578
Number of extensions: 254227
Number of successful extensions: 620
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 97
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)