Query 036746
Match_columns 281
No_of_seqs 241 out of 3759
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.1E-33 6.8E-38 270.8 22.5 247 31-280 27-296 (968)
2 PLN00113 leucine-rich repeat r 99.9 3E-27 6.6E-32 229.1 15.3 205 75-280 140-344 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.1E-23 2.5E-28 182.2 2.4 205 75-280 173-377 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.1E-22 2.4E-27 176.0 4.4 206 75-281 125-330 (873)
5 KOG0444 Cytoskeletal regulator 99.8 5.7E-22 1.2E-26 173.3 -2.8 201 75-281 78-281 (1255)
6 KOG0617 Ras suppressor protein 99.8 3.6E-22 7.9E-27 148.3 -4.3 176 75-256 33-212 (264)
7 KOG0617 Ras suppressor protein 99.8 8.8E-22 1.9E-26 146.3 -5.4 164 95-264 29-193 (264)
8 KOG0444 Cytoskeletal regulator 99.8 2.5E-21 5.4E-26 169.3 -3.5 201 74-280 102-328 (1255)
9 KOG4237 Extracellular matrix p 99.8 9.7E-21 2.1E-25 157.1 -3.0 204 75-281 67-335 (498)
10 KOG0472 Leucine-rich repeat pr 99.7 7E-21 1.5E-25 158.4 -10.3 197 75-281 68-288 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 8.1E-21 1.8E-25 158.0 -10.1 197 76-281 46-265 (565)
12 PLN03210 Resistant to P. syrin 99.7 2.6E-16 5.6E-21 154.5 17.0 81 75-157 611-691 (1153)
13 PLN03210 Resistant to P. syrin 99.7 3.4E-16 7.3E-21 153.7 17.1 101 77-181 591-691 (1153)
14 PRK15370 E3 ubiquitin-protein 99.7 9.5E-17 2.1E-21 149.0 12.2 180 76-280 200-379 (754)
15 cd00116 LRR_RI Leucine-rich re 99.7 1.9E-18 4.2E-23 147.5 0.7 206 74-280 80-319 (319)
16 cd00116 LRR_RI Leucine-rich re 99.7 3.1E-18 6.7E-23 146.2 -0.4 206 75-281 51-291 (319)
17 PRK15370 E3 ubiquitin-protein 99.7 1.1E-16 2.3E-21 148.7 9.5 187 75-281 220-428 (754)
18 PRK15387 E3 ubiquitin-protein 99.7 9.6E-16 2.1E-20 141.9 14.9 184 75-281 222-458 (788)
19 KOG0618 Serine/threonine phosp 99.7 2.8E-18 6.1E-23 155.8 -3.5 197 75-279 241-487 (1081)
20 PLN03150 hypothetical protein; 99.6 2.5E-15 5.4E-20 138.5 12.8 151 29-184 368-528 (623)
21 KOG0618 Serine/threonine phosp 99.6 1.1E-17 2.3E-22 152.1 -4.8 184 90-278 301-510 (1081)
22 KOG4237 Extracellular matrix p 99.6 2.1E-17 4.6E-22 137.5 -5.1 206 73-280 89-358 (498)
23 KOG0532 Leucine-rich repeat (L 99.5 2.3E-16 5.1E-21 136.8 -5.0 180 75-264 75-254 (722)
24 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.3E-18 128.5 11.1 173 75-263 242-465 (788)
25 COG4886 Leucine-rich repeat (L 99.5 4.6E-14 9.9E-19 124.1 5.3 176 96-280 113-289 (394)
26 KOG0532 Leucine-rich repeat (L 99.4 2.2E-15 4.7E-20 130.9 -4.4 175 97-281 73-247 (722)
27 COG4886 Leucine-rich repeat (L 99.4 3.4E-13 7.5E-18 118.6 5.9 180 75-262 116-296 (394)
28 PLN03150 hypothetical protein; 99.3 2.4E-12 5.2E-17 118.9 8.2 107 173-279 420-526 (623)
29 KOG3207 Beta-tubulin folding c 99.3 5.6E-13 1.2E-17 112.7 -1.2 205 74-281 120-339 (505)
30 KOG3207 Beta-tubulin folding c 99.2 9.9E-13 2.2E-17 111.2 -2.0 183 96-280 118-313 (505)
31 PF14580 LRR_9: Leucine-rich r 99.2 2E-11 4.3E-16 93.9 4.4 107 121-232 17-126 (175)
32 KOG1909 Ran GTPase-activating 99.2 6E-12 1.3E-16 103.8 0.3 184 96-280 89-310 (382)
33 PF14580 LRR_9: Leucine-rich r 99.1 4.9E-11 1.1E-15 91.7 4.7 127 143-275 15-147 (175)
34 KOG1909 Ran GTPase-activating 99.1 1E-11 2.2E-16 102.4 -1.4 206 75-281 30-283 (382)
35 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.5E-16 99.7 -1.1 183 91-281 206-412 (490)
36 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 3.9E-15 73.2 3.3 61 219-280 1-61 (61)
37 KOG1259 Nischarin, modulator o 99.0 2.1E-11 4.6E-16 98.9 -1.5 128 99-232 284-412 (490)
38 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 69.6 3.9 61 195-255 1-61 (61)
39 KOG1859 Leucine-rich repeat pr 98.9 7.7E-12 1.7E-16 112.0 -9.2 180 92-280 102-291 (1096)
40 KOG0531 Protein phosphatase 1, 98.8 6.3E-10 1.4E-14 98.5 -1.4 125 77-208 74-199 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 2.8E-09 6E-14 101.3 1.9 107 75-182 545-653 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.9E-13 96.8 3.3 129 75-206 523-653 (889)
43 KOG0531 Protein phosphatase 1, 98.7 2.6E-09 5.6E-14 94.6 -1.5 174 72-256 92-268 (414)
44 KOG2982 Uncharacterized conser 98.6 9.5E-09 2.1E-13 83.6 1.1 184 97-280 69-261 (418)
45 COG5238 RNA1 Ran GTPase-activa 98.5 8.1E-08 1.8E-12 77.3 2.7 183 75-258 30-257 (388)
46 KOG4579 Leucine-rich repeat (L 98.4 5.5E-09 1.2E-13 75.5 -5.2 105 124-232 28-136 (177)
47 PF08263 LRRNT_2: Leucine rich 98.4 7.8E-07 1.7E-11 51.8 4.3 40 32-71 2-43 (43)
48 PF12799 LRR_4: Leucine Rich r 98.2 1.2E-06 2.6E-11 51.2 3.3 37 219-256 1-37 (44)
49 KOG2120 SCF ubiquitin ligase, 98.2 6.6E-09 1.4E-13 84.5 -9.1 177 100-278 186-373 (419)
50 KOG4579 Leucine-rich repeat (L 98.2 3.2E-08 7E-13 71.6 -5.0 87 95-184 49-136 (177)
51 PF12799 LRR_4: Leucine Rich r 98.2 2.2E-06 4.7E-11 50.1 3.5 36 196-232 2-37 (44)
52 KOG1859 Leucine-rich repeat pr 98.2 1.2E-08 2.6E-13 92.1 -9.2 124 101-231 166-291 (1096)
53 COG5238 RNA1 Ran GTPase-activa 98.1 7E-07 1.5E-11 72.1 0.3 205 75-280 58-315 (388)
54 KOG2120 SCF ubiquitin ligase, 98.1 2.2E-08 4.8E-13 81.5 -8.3 155 124-279 186-349 (419)
55 KOG2982 Uncharacterized conser 98.1 5.7E-07 1.2E-11 73.5 -0.9 187 94-280 40-236 (418)
56 PRK15386 type III secretion pr 98.0 1.7E-05 3.7E-10 68.8 7.7 132 75-229 52-187 (426)
57 KOG3665 ZYG-1-like serine/thre 98.0 9.3E-07 2E-11 82.3 -0.4 125 146-272 147-279 (699)
58 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 62.4 5.5 103 100-204 43-149 (233)
59 KOG3665 ZYG-1-like serine/thre 97.9 4.3E-06 9.4E-11 78.0 1.6 133 147-281 122-263 (699)
60 PRK15386 type III secretion pr 97.9 8E-05 1.7E-09 64.7 8.9 137 95-254 48-188 (426)
61 KOG1644 U2-associated snRNP A' 97.9 3.9E-05 8.4E-10 59.5 6.0 126 101-230 21-151 (233)
62 PF13306 LRR_5: Leucine rich r 97.8 0.00015 3.3E-09 53.0 8.0 122 143-271 8-129 (129)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00067 1.4E-08 49.5 8.4 122 118-245 7-128 (129)
64 KOG2739 Leucine-rich acidic nu 97.4 9.8E-05 2.1E-09 59.5 2.9 84 191-274 61-149 (260)
65 KOG2739 Leucine-rich acidic nu 97.4 5.6E-05 1.2E-09 60.8 1.5 42 119-160 61-104 (260)
66 KOG2123 Uncharacterized conser 97.0 1.4E-05 3E-10 64.9 -6.0 100 146-249 18-123 (388)
67 KOG2123 Uncharacterized conser 96.7 5.5E-05 1.2E-09 61.6 -4.6 100 170-274 18-123 (388)
68 KOG4308 LRR-containing protein 96.4 1.2E-05 2.6E-10 71.9 -11.6 87 194-280 203-302 (478)
69 PF00560 LRR_1: Leucine Rich R 96.0 0.003 6.5E-08 30.7 0.9 19 125-144 2-20 (22)
70 KOG1947 Leucine rich repeat pr 95.6 0.00063 1.4E-08 61.3 -4.6 110 98-207 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0067 1.5E-07 29.4 0.6 11 222-232 3-13 (22)
72 KOG1947 Leucine rich repeat pr 94.8 0.0093 2E-07 53.7 0.5 130 146-275 187-328 (482)
73 PF13504 LRR_7: Leucine rich r 94.6 0.024 5.1E-07 25.5 1.3 13 244-256 2-14 (17)
74 smart00370 LRR Leucine-rich re 94.3 0.041 9E-07 27.7 2.1 22 242-264 1-22 (26)
75 smart00369 LRR_TYP Leucine-ric 94.3 0.041 9E-07 27.7 2.1 22 242-264 1-22 (26)
76 KOG0473 Leucine-rich repeat pr 93.5 0.0014 3E-08 52.2 -6.5 85 73-160 40-124 (326)
77 KOG4308 LRR-containing protein 92.9 0.00044 9.4E-09 62.1 -11.6 110 172-281 145-275 (478)
78 KOG0473 Leucine-rich repeat pr 91.9 0.0027 5.9E-08 50.6 -6.8 90 165-257 36-125 (326)
79 PF13516 LRR_6: Leucine Rich r 90.3 0.11 2.3E-06 25.6 0.4 17 243-259 2-18 (24)
80 smart00365 LRR_SD22 Leucine-ri 88.8 0.37 8E-06 24.4 1.7 13 268-280 2-14 (26)
81 KOG3864 Uncharacterized conser 87.4 0.087 1.9E-06 41.3 -1.6 36 147-182 101-136 (221)
82 smart00368 LRR_RI Leucine rich 86.7 0.54 1.2E-05 24.1 1.6 13 268-280 2-14 (28)
83 KOG4341 F-box protein containi 86.6 0.25 5.5E-06 43.0 0.5 157 122-278 267-436 (483)
84 KOG4341 F-box protein containi 85.0 0.49 1.1E-05 41.3 1.5 112 169-280 292-413 (483)
85 KOG3864 Uncharacterized conser 83.0 0.47 1E-05 37.3 0.5 81 196-277 102-185 (221)
86 smart00364 LRR_BAC Leucine-ric 76.8 1.8 4E-05 21.8 1.3 16 124-140 3-18 (26)
87 KOG3763 mRNA export factor TAP 71.8 2.2 4.8E-05 38.7 1.5 11 195-205 244-254 (585)
88 KOG3763 mRNA export factor TAP 69.3 2.7 5.8E-05 38.2 1.5 80 193-274 216-307 (585)
89 smart00367 LRR_CC Leucine-rich 63.1 5.3 0.00011 19.8 1.3 13 267-279 1-13 (26)
90 PF07172 GRP: Glycine rich pro 45.5 13 0.00029 25.5 1.4 20 1-20 1-20 (95)
91 PF10731 Anophelin: Thrombin i 29.1 78 0.0017 19.5 2.7 31 1-33 1-31 (65)
92 TIGR00864 PCC polycystin catio 24.1 57 0.0012 36.2 2.4 32 81-112 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-33 Score=270.76 Aligned_cols=247 Identities=36% Similarity=0.622 Sum_probs=161.6
Q ss_pred CHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC
Q 036746 31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS 110 (281)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 110 (281)
.+.|..++++|++.+. ++.....+|....++|.|.|+.|... ++++.|+++++++.+.++..+..+++|+.|++++|.
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 3478899999999985 56667889988889999999999853 689999999999999999889999999999999999
Q ss_pred CccCCchhcc-CCCCCCEEEccCccCcccCCC----------------------CCCCCCCCcEEEccCCCCCCCCCccc
Q 036746 111 FTNAIPPQIG-HLRRLQILYLQINSFDGEIPA----------------------STSNCSNLLVVSLALNHLVGKIPSEF 167 (281)
Q Consensus 111 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~~~~~~~~~l 167 (281)
+.+.+|..+. .+++|++|++++|.+++.+|. .++++++|++|++++|.+.+.+|..+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 9877776654 777788877777777655443 34444444444444444444444444
Q ss_pred CCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcE
Q 036746 168 GSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT 247 (281)
Q Consensus 168 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 247 (281)
+++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|+.|++++|.+++.+|..+..+++|+.
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 44444455555444444444444445555555555555555445555555555555555555555555555555555555
Q ss_pred EEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 248 L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
|++++|.+.+.+|..+. .+++|+.|++++|++
T Consensus 265 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCeeeccCchhHh-hccCcCEEECcCCee
Confidence 55555555555555444 455555555555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3e-27 Score=229.13 Aligned_cols=205 Identities=36% Similarity=0.582 Sum_probs=115.1
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 44555555555555555555666666666666666665555655666666666666666665555555556666666666
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 66665555555555555666666655555555555555555555555555555555555555555555555555555545
Q ss_pred cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+|..+.++++|+.|++++|.+.+.+|..+. .+++|+.|++++|++
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l 344 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKF 344 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCC
Confidence 555555555555555555555444444433 445555555554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-23 Score=182.15 Aligned_cols=205 Identities=20% Similarity=0.200 Sum_probs=103.4
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.|++++|.++..--..|..+.+|..|.|+.|.++...+..|.++++|+.|+|..|++...-.-.|.++++|+.|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 34555555555555444445555555555555555555444445555666666666655554222233444444444444
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
..|.+...-...|..|.++++|++..|.+...-...+..++.|+.|++++|.|....++.+...++|++|+++.|+++.-
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 44444433333444455555555555555433334445555555555555555544455555555555555555555544
Q ss_pred cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+..+..+..|++|+|+.|.|. .+.+..+.++.+|++|||++|.+
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred ChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeE
Confidence 4444444444444444444444 34444444444444444444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-22 Score=176.03 Aligned_cols=206 Identities=22% Similarity=0.281 Sum_probs=126.2
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++.+|-+...-...++.++.|+.|||+.|.++...-+.|+.-.++++|+|++|.|+..-...|..+.+|.+|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 45666777776666555556666667777777777666444455666667777777777777555556666777777777
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|+++...+..|.++++|+.|++..|.+.-.---.|..+++|+.|.+..|.+...-...|..+.++++|++..|++...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 77777744445566677777777777766433233455555555555555555533344455566666666666666544
Q ss_pred cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
-..++.++++|+.|++++|.|. .+..+-...+++|+.|+|++|+|+
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccc
Confidence 4455666666666666666666 333333335666666666666654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=5.7e-22 Score=173.26 Aligned_cols=201 Identities=26% Similarity=0.400 Sum_probs=134.8
Q ss_pred CcEEEEEcCCCCcee-ecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCC-CCCCCCCcEE
Q 036746 75 QRVTILDLQNLKLVG-TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS-TSNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 152 (281)
+++++++++.|++.. -+|+.+-.+..|+.|+|+.|++. ..|..+..-+++-+|+|++|+|. .+|.. +.+++-|-.|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 556666666666532 24555666677777777777666 56666666666667777777766 55543 4566666677
Q ss_pred EccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc-ccCCccCCCCCCCCEEEcccCcc
Q 036746 153 SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNNL 231 (281)
Q Consensus 153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l 231 (281)
++++|++. .+|+.+..+..|++|.+++|.+....-..+..+++|++|.+++.+-+ ..+|.++..+.+|+.+|+++|.+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 77777666 56666666677777777776654332334455666677777766544 34777778888888888888888
Q ss_pred ccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 232 SGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 232 ~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
. .+|..+..+++|+.|+|++|+|+ ++..... ...+|+.|++|+|++|
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT 281 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc
Confidence 7 77888888888888888888887 5554444 4567788888888765
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.81 E-value=3.6e-22 Score=148.33 Aligned_cols=176 Identities=29% Similarity=0.473 Sum_probs=117.5
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.|.+++|.++ .+|+.++.+.+|+.|++.+|+++ .+|..++.+++|++|+++-|++. .+|.+|+.++.|+.|++
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 56677777777765 55666777777777777777776 56667777777777777777776 66777777777777777
Q ss_pred cCCCCCC-CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 155 ALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 155 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
++|.+.. .+|..|..|..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 7776653 45666666667777777777665 56666777777777777777666 66667777777777777777776
Q ss_pred ccChhccCCCC---CcEEEcccCccc
Q 036746 234 TIPPSIFNISS---IQTFDVGSTYIE 256 (281)
Q Consensus 234 ~~p~~l~~l~~---L~~L~l~~n~i~ 256 (281)
.+|+.++++.- =+.+.+..|...
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 56665554321 123444555443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=8.8e-22 Score=146.30 Aligned_cols=164 Identities=32% Similarity=0.550 Sum_probs=151.8
Q ss_pred ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (281)
+-.+.+++.|.++.|.++ .+|+.+..+.+|+.|++.+|+++ .+|.+++.+++|+.|+++-|++. .+|.+|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446788999999999999 67778999999999999999999 99999999999999999999998 8999999999999
Q ss_pred EEecccccccc-CCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccC
Q 036746 175 FLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253 (281)
Q Consensus 175 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 253 (281)
+|++..|.+.. .+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998853 58889999999999999999998 88999999999999999999998 88999999999999999999
Q ss_pred cccccCChhhh
Q 036746 254 YIEGEMPLDLG 264 (281)
Q Consensus 254 ~i~~~~p~~~~ 264 (281)
.++ .+|.++.
T Consensus 184 rl~-vlppel~ 193 (264)
T KOG0617|consen 184 RLT-VLPPELA 193 (264)
T ss_pred eee-ecChhhh
Confidence 999 7887664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.5e-21 Score=169.30 Aligned_cols=201 Identities=25% Similarity=0.359 Sum_probs=128.8
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
...++.||++.|++. ..|..+..-+++-.|+|++|+|.......|-++.-|-.|||++|++. .+|+.+..+..|++|.
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 367888899888875 67777777788888888888887433344557788888888888887 7888888888888888
Q ss_pred ccCCCCCC-------------------------CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc
Q 036746 154 LALNHLVG-------------------------KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 154 l~~n~~~~-------------------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (281)
+++|.+.. .+|..+..+.+|+.++++.|.+. .+|+.+.++.+|+.|++++|.++
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 88886642 23444444555555555555554 44555555555555555555555
Q ss_pred ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccc-ccCChhhhhCCCCCCEEeccCccC
Q 036746 209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE-GEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~-~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+--..+.+.+|++|++++|+++ .+|.++..+++|+.|.+.+|+++ ..+|..+. .+.+|+.+...+|++
T Consensus 259 -eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG-KL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 259 -ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG-KLIQLEVFHAANNKL 328 (1255)
T ss_pred -eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh-hhhhhHHHHhhcccc
Confidence 33333444455555555555555 55666666666666666666544 23555555 455666666665554
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=9.7e-21 Score=157.13 Aligned_cols=204 Identities=23% Similarity=0.281 Sum_probs=150.7
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC-ccCcccCC-CCCCCCCCCcEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI-NSFDGEIP-ASTSNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L 152 (281)
...+.++++.|+++...+..|+.+++|+.|+|+.|.|+...|++|.+++++..|.+.+ |+|+ .+| ..|.++.+++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 6788999999999988888999999999999999999999999999999988877766 8998 555 467888888888
Q ss_pred EccCCCCCCCCCcccCCCCCCcEEeccccccccCCCc-ccCCCCCCCEEEcccCcC------------------------
Q 036746 153 SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGF------------------------ 207 (281)
Q Consensus 153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~------------------------ 207 (281)
.+.-|++.-...+.|..++++..|.+.+|.+. .+++ .+..+..++.+.+..|.+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 88888877666677777788877777777665 3333 455555555554443321
Q ss_pred -------------------------------------cccCC-ccCCCCCCCCEEEcccCccccccChhccCCCCCcEEE
Q 036746 208 -------------------------------------YGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFD 249 (281)
Q Consensus 208 -------------------------------------~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 249 (281)
.+.-| ..|.++++|++|++++|++++.-+.+|.+..++++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 00111 2345677777777777777766667777777777777
Q ss_pred cccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 250 VGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 250 l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
|..|+|. .+...++.++..|+.|++++|+||
T Consensus 305 L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 305 LTRNKLE-FVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred cCcchHH-HHHHHhhhccccceeeeecCCeeE
Confidence 7777776 566666667777777777777765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=7e-21 Score=158.40 Aligned_cols=197 Identities=27% Similarity=0.449 Sum_probs=113.5
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
..++++++.+|.+. .+|++++.+..++.++.+.|++. .+|..+..+.++..++.++|.+. .+|++++.+..+..++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 45677777777765 56666666666666666666666 55666666666666666666655 45555555544444444
Q ss_pred cCCCCCCCCCccc-----------------------CCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccC
Q 036746 155 ALNHLVGKIPSEF-----------------------GSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI 211 (281)
Q Consensus 155 ~~n~~~~~~~~~l-----------------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 211 (281)
.+|+++ .+|+++ -.|+.|++++...|-+. .+|+.++.+.+|..|++..|.+. .+
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence 444444 333332 23555666666655443 56666666666666677666665 44
Q ss_pred CccCCCCCCCCEEEcccCccccccChhcc-CCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 212 PDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
| .|.+++.|.+++++.|.+. .+|.... .++++..||+.+|+++ +.|.++- -+.+|++||+|+|.+|
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS 288 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc
Confidence 5 4555555555555555554 4444333 5555566666666655 5555554 3555666666665543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=8.1e-21 Score=158.02 Aligned_cols=197 Identities=26% Similarity=0.432 Sum_probs=168.2
Q ss_pred cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc
Q 036746 76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA 155 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 155 (281)
.+..+.++.|.+. .+.+.+.++..+..+++..|.+. ..|++++.+..++.++.++|++. .+|..+..+.++++++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4677889999876 45566889999999999999998 78889999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCC-----------------------CCCCCEEEcccCcCcccCC
Q 036746 156 LNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN-----------------------LSSLRGLSLSRNGFYGSIP 212 (281)
Q Consensus 156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-----------------------l~~L~~L~l~~n~~~~~~p 212 (281)
+|.+. .+|+.++.+..+..++..+|++. ..|..+.. ++.|++++...|-+. .+|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence 99998 78889999999999988888876 44544444 345556666666555 788
Q ss_pred ccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 213 DTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..++.+.+|+.|++.+|++. .+| .|.++..|++|+++.|.|. .+|++...+++++..||+.+|+++
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 88888899999999999987 777 7788899999999999998 899999889999999999999974
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=2.6e-16 Score=154.47 Aligned_cols=81 Identities=25% Similarity=0.262 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.|++.++.+. .++..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+.++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 44555555555543 3444444555555555554433223332 444445555555444433344444444444444444
Q ss_pred cCC
Q 036746 155 ALN 157 (281)
Q Consensus 155 ~~n 157 (281)
++|
T Consensus 689 ~~c 691 (1153)
T PLN03210 689 SRC 691 (1153)
T ss_pred CCC
Confidence 443
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=3.4e-16 Score=153.65 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=43.4
Q ss_pred EEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746 77 VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL 156 (281)
Q Consensus 77 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 156 (281)
++.|++.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|+.|+++++.....+| .+..+++|++|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 444444444432 333333 2344444444444443 333334444444444444433222333 234444444444444
Q ss_pred CCCCCCCCcccCCCCCCcEEecccc
Q 036746 157 NHLVGKIPSEFGSLSKLQFLSTTAN 181 (281)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n 181 (281)
|.....+|..+..+++|+.|++++|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCC
Confidence 4433344444444444444444443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=9.5e-17 Score=149.03 Aligned_cols=180 Identities=26% Similarity=0.439 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc
Q 036746 76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA 155 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 155 (281)
.++.|++++|.+. .+|..+. .+|++|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4555555555554 3343332 35566666666555 3444332 34556666666555 4454432 356666666
Q ss_pred CCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccccc
Q 036746 156 LNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235 (281)
Q Consensus 156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (281)
+|++. .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++ .+
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~L 340 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALT-SL 340 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccc-cC
Confidence 66665 3454332 35666666666655 2333221 23444444444444 223222 134555555555554 23
Q ss_pred ChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 236 PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 236 p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+|
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~L 379 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNAL 379 (754)
T ss_pred Chhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcC
Confidence 43332 35555555555555 344433 24555555555554
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.9e-18 Score=147.48 Aligned_cols=206 Identities=21% Similarity=0.257 Sum_probs=130.4
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCC---CCEEeCCCCCCcc----CCchhccCC-CCCCEEEccCccCcc----cCCC
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSF---LQKLDLRNNSFTN----AIPPQIGHL-RRLQILYLQINSFDG----EIPA 141 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~----~~~~ 141 (281)
.++++.|+++++.+.+..+..+..+.. |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 367888888888776555555544444 8888888887763 122344555 778888888887763 2333
Q ss_pred CCCCCCCCcEEEccCCCCCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCcccCCc
Q 036746 142 STSNCSNLLVVSLALNHLVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGSIPD 213 (281)
Q Consensus 142 ~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~ 213 (281)
.+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 455667788888888877632 233345556788888887776532 233455667788888888877642221
Q ss_pred cCC-----CCCCCCEEEcccCcccc----ccChhccCCCCCcEEEcccCccccc----CChhhhhCC-CCCCEEeccCcc
Q 036746 214 TFG-----GLKNLVNLSLVVNNLSG----TIPPSIFNISSIQTFDVGSTYIEGE----MPLDLGTTL-PNLRIFSITGNQ 279 (281)
Q Consensus 214 ~~~-----~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~i~~~----~p~~~~~~~-~~L~~L~l~~N~ 279 (281)
.+. ..+.|+.|++++|.+++ .+...+..+++|+.+++++|.+++. +...+- .. +.|+++|+.+|+
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 318 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL-EPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh-hcCCchhhcccCCCC
Confidence 111 24678888888887752 2334455567788888888887744 222222 33 678888888776
Q ss_pred C
Q 036746 280 F 280 (281)
Q Consensus 280 l 280 (281)
+
T Consensus 319 ~ 319 (319)
T cd00116 319 F 319 (319)
T ss_pred C
Confidence 4
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=3.1e-18 Score=146.18 Aligned_cols=206 Identities=23% Similarity=0.235 Sum_probs=153.8
Q ss_pred CcEEEEEcCCCCce------eecCccccCCCCCCEEeCCCCCCccCCchhccCCCC---CCEEEccCccCcc----cCCC
Q 036746 75 QRVTILDLQNLKLV------GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRR---LQILYLQINSFDG----EIPA 141 (281)
Q Consensus 75 ~~l~~L~l~~~~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~ 141 (281)
+.++.++++++.+. ..++..+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 56889999888765 223456777889999999999998656666655554 9999999999873 2334
Q ss_pred CCCCC-CCCcEEEccCCCCCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc--
Q 036746 142 STSNC-SNLLVVSLALNHLVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS-- 210 (281)
Q Consensus 142 ~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~-- 210 (281)
.+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+.+.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 45666 8999999999998842 334566778999999999988742 334455667999999999998743
Q ss_pred --CCccCCCCCCCCEEEcccCccccccChhcc-----CCCCCcEEEcccCccccc----CChhhhhCCCCCCEEeccCcc
Q 036746 211 --IPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-----NISSIQTFDVGSTYIEGE----MPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 211 --~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~i~~~----~p~~~~~~~~~L~~L~l~~N~ 279 (281)
++..+..+++|+.|++++|.+++.....+. ..+.|++|++++|.+++. +...+ ..+++|+++++++|+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~-~~~~~L~~l~l~~N~ 289 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH-hcCCCccEEECCCCC
Confidence 345567789999999999998853333222 237999999999998732 22222 356899999999998
Q ss_pred CC
Q 036746 280 FT 281 (281)
Q Consensus 280 lt 281 (281)
++
T Consensus 290 l~ 291 (319)
T cd00116 290 FG 291 (319)
T ss_pred Cc
Confidence 75
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.1e-16 Score=148.72 Aligned_cols=187 Identities=21% Similarity=0.340 Sum_probs=120.2
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 57888999998886 4565443 46888888888887 5666553 47888888888887 5676554 47888888
Q ss_pred cCCCCCCCCCcccC-------------------CCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccC
Q 036746 155 ALNHLVGKIPSEFG-------------------SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF 215 (281)
Q Consensus 155 ~~n~~~~~~~~~l~-------------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 215 (281)
++|.++ .+|..+. ..++|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+
T Consensus 291 s~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 291 YDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred CCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh
Confidence 888776 3443221 1134555555555554 2443332 46677777777665 455444
Q ss_pred CCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhh---hCCCCCCEEeccCccCC
Q 036746 216 GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG---TTLPNLRIFSITGNQFT 281 (281)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~---~~~~~L~~L~l~~N~lt 281 (281)
. ++|+.|++++|.++ .+|..+. ..|+.|++++|++. .+|..+. ..++++..|++.+|+|+
T Consensus 366 p--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 P--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred c--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2 46777777777776 4555443 25777777777776 5555432 23477888888888874
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=9.6e-16 Score=141.89 Aligned_cols=184 Identities=26% Similarity=0.325 Sum_probs=107.7
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcc-----------------
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG----------------- 137 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 137 (281)
.+++.|++.+|++. .+|. ..++|++|++++|.++ .+|.. .++|+.|++++|.++.
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 293 (788)
T ss_pred cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCc
Confidence 46788888888876 3554 2478888888888887 34432 2344444444444331
Q ss_pred --cCCCCCCCCCCCcEEEccCCCCCCCCCcc---c----------CC---C-CCCcEEeccccccccCCCcccCC-----
Q 036746 138 --EIPASTSNCSNLLVVSLALNHLVGKIPSE---F----------GS---L-SKLQFLSTTANNLIGNIPSSLGN----- 193 (281)
Q Consensus 138 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---l----------~~---l-~~L~~L~l~~n~~~~~~~~~l~~----- 193 (281)
.+|. ..++|+.|++++|.+.+ +|.. + .. + .+|+.|++++|++.. +|.....
T Consensus 294 Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~ 368 (788)
T PRK15387 294 LTSLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLW 368 (788)
T ss_pred cccccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceeh
Confidence 2222 12456777777776663 2221 1 11 1 246666666666652 3321110
Q ss_pred ------------CCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCCh
Q 036746 194 ------------LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPL 261 (281)
Q Consensus 194 ------------l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~ 261 (281)
..+|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|.
T Consensus 369 Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~ 439 (788)
T PRK15387 369 AYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPE 439 (788)
T ss_pred hhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccCh
Confidence 123455555555554 23322 245666677777666 35543 246777888888887 7888
Q ss_pred hhhhCCCCCCEEeccCccCC
Q 036746 262 DLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 262 ~~~~~~~~L~~L~l~~N~lt 281 (281)
.+. .+++|+.|++++|+|+
T Consensus 440 sl~-~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 440 SLI-HLSSETTVNLEGNPLS 458 (788)
T ss_pred HHh-hccCCCeEECCCCCCC
Confidence 876 7899999999999985
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=2.8e-18 Score=155.77 Aligned_cols=197 Identities=25% Similarity=0.369 Sum_probs=115.3
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.++++.+.+. .+|..++.+.+|+.++..+|.+. .+|..+....+|+.|.+..|.++ .+|+...++++|++|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 56777777777775 44567777777888887777774 44444444444444444444444 44444444555555555
Q ss_pred cCCCCC-------------------------------------------------CCCCcccCCCCCCcEEecccccccc
Q 036746 155 ALNHLV-------------------------------------------------GKIPSEFGSLSKLQFLSTTANNLIG 185 (281)
Q Consensus 155 ~~n~~~-------------------------------------------------~~~~~~l~~l~~L~~L~l~~n~~~~ 185 (281)
..|.+. ...-+.+.++++|++|++++|.+.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 555443 333333445555666666665554
Q ss_pred CCC-cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhh
Q 036746 186 NIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264 (281)
Q Consensus 186 ~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~ 264 (281)
.+| ..+.++..|++|+++||.++ .+|..+..+..|++|....|.+. ..| .+.+++.|+.+|++.|+++...-....
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333 33455555666666666555 55555556666666666556555 455 566777888888888877743222221
Q ss_pred hCCCCCCEEeccCcc
Q 036746 265 TTLPNLRIFSITGNQ 279 (281)
Q Consensus 265 ~~~~~L~~L~l~~N~ 279 (281)
.-|+|++||++||.
T Consensus 474 -p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 -PSPNLKYLDLSGNT 487 (1081)
T ss_pred -CCcccceeeccCCc
Confidence 23678888888875
No 20
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=2.5e-15 Score=138.52 Aligned_cols=151 Identities=30% Similarity=0.480 Sum_probs=124.4
Q ss_pred CCCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCC-----cccceEecCCC----CcEEEEEcCCCCceeecCccccCCC
Q 036746 29 SGNETDRAALLEFKSKITNDALGVLGSWNDSIHFC-----QWYGVTCSPRY----QRVTILDLQNLKLVGTLSPHIGNLS 99 (281)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~~~~~~----~~l~~L~l~~~~l~~~~~~~~~~l~ 99 (281)
.....|..+|..+|..+. .+. ..+|.. ++| .|.|+.|.... ..++.|+++++.+.|.+|..++.++
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPL--RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Ccc--cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 345568889999999885 322 237854 345 79999995321 2588999999999999999999999
Q ss_pred CCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCC-CCCcEEec
Q 036746 100 FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSL-SKLQFLST 178 (281)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l 178 (281)
+|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..++++++|++|++++|.+.+.+|..+..+ .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999887654 45677888
Q ss_pred cccccc
Q 036746 179 TANNLI 184 (281)
Q Consensus 179 ~~n~~~ 184 (281)
.+|...
T Consensus 523 ~~N~~l 528 (623)
T PLN03150 523 TDNAGL 528 (623)
T ss_pred cCCccc
Confidence 777654
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-17 Score=152.10 Aligned_cols=184 Identities=27% Similarity=0.346 Sum_probs=133.4
Q ss_pred ecCccccCCCCCCEEeCCCCCCccCCchhcc--------------------------CCCCCCEEEccCccCcccCCCCC
Q 036746 90 TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG--------------------------HLRRLQILYLQINSFDGEIPAST 143 (281)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------~l~~L~~L~l~~n~l~~~~~~~~ 143 (281)
.+|+...++++|++|+|..|.+. ..|+.+- .++.|+.|++.+|.++...-+.+
T Consensus 301 yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 35555566777777777777665 3332211 02234455566666665555556
Q ss_pred CCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCE
Q 036746 144 SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223 (281)
Q Consensus 144 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 223 (281)
.+.++|+.|++++|.+.......+.++..|++|++++|+++ .+|..+..+..|++|...+|++. .+| .+..+++|+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 78889999999999998443456789999999999999998 78999999999999999999998 888 8889999999
Q ss_pred EEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCc
Q 036746 224 LSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 224 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
+|++.|+++...-+....-++|++||+++|.-. ......+..+.++...++.-|
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence 999999997533232223389999999999743 333333345566666665544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-17 Score=137.46 Aligned_cols=206 Identities=24% Similarity=0.250 Sum_probs=142.8
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCC-CCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcE
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRN-NSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV 151 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 151 (281)
.+++++.||+++|++...-|..|.++..+..|-+.+ |.|+......|.++..++.|.+.-|.+.-...+.|..++++..
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 458899999999999988899999999998888877 7777444445666655555555544444222233344444444
Q ss_pred EEccCCCCCCCCCc-ccCCCCCCcEEeccccc------------------------------------------------
Q 036746 152 VSLALNHLVGKIPS-EFGSLSKLQFLSTTANN------------------------------------------------ 182 (281)
Q Consensus 152 L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~------------------------------------------------ 182 (281)
|.+..|.+. .++. .+..+..++.+.+..|.
T Consensus 169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS 247 (498)
T ss_pred hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence 444444333 1111 22222333332222221
Q ss_pred -------------cccCCC-cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEE
Q 036746 183 -------------LIGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTF 248 (281)
Q Consensus 183 -------------~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 248 (281)
..+..| ..|..+++|+.|++++|.+++.-+.+|.++..+++|.+..|++...-...|.++.+|+.|
T Consensus 248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTL 327 (498)
T ss_pred HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceee
Confidence 111222 247788999999999999998888999999999999999999975556778899999999
Q ss_pred EcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 249 DVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 249 ~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+|.+|+|+...|..+ +.+..|..|++-+|++
T Consensus 328 ~L~~N~it~~~~~aF-~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 328 SLYDNQITTVAPGAF-QTLFSLSTLNLLSNPF 358 (498)
T ss_pred eecCCeeEEEecccc-cccceeeeeehccCcc
Confidence 999999996555544 5889999999999886
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.52 E-value=2.3e-16 Score=136.79 Aligned_cols=180 Identities=26% Similarity=0.441 Sum_probs=154.5
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
...+..|++.|.+. ++|..+..+..|+.+.++.|.+. .+|..+..+..|++||++.|+++ .+|..++.++ |+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 44566788888875 78888888888999999999887 78888999999999999999998 8898888776 899999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|+++ .+|..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+..+ .|..||+++|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 999998 78888888899999999999887 77888999999999999999988 677777755 4899999999998 7
Q ss_pred cChhccCCCCCcEEEcccCcccccCChhhh
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~ 264 (281)
+|-.|..+++|++|-|.+|.+. .-|.++-
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 8999999999999999999998 5666653
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.1e-13 Score=128.48 Aligned_cols=173 Identities=27% Similarity=0.285 Sum_probs=111.7
Q ss_pred CcEEEEEcCCCCceeecCccccC-----------------CCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGN-----------------LSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~-----------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 137 (281)
++++.|++++|++.. +|..... ...|+.|++++|.+. .+|. .+++|+.|++++|.+++
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred CCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc
Confidence 677777777777663 2321111 123445555555554 2332 23456666666666552
Q ss_pred cCCCC---CC----------C---C-CCCcEEEccCCCCCCCCCcccC-----------------CCCCCcEEecccccc
Q 036746 138 EIPAS---TS----------N---C-SNLLVVSLALNHLVGKIPSEFG-----------------SLSKLQFLSTTANNL 183 (281)
Q Consensus 138 ~~~~~---~~----------~---l-~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L~l~~n~~ 183 (281)
+|.. +. . + .+|+.|++++|++.. +|.... ...+|+.|++++|.+
T Consensus 317 -Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~L 394 (788)
T PRK15387 317 -LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL 394 (788)
T ss_pred -CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCcc
Confidence 2221 10 0 1 256777777777663 332111 113678888888887
Q ss_pred ccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhh
Q 036746 184 IGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDL 263 (281)
Q Consensus 184 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~ 263 (281)
. .+|.. .++|+.|++++|.++ .+|... .+|+.|++++|+++ .+|..+.++++|+.|++++|++++.++..+
T Consensus 395 t-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 395 T-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 7 35543 357999999999998 577543 46888999999998 789999999999999999999998877655
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.47 E-value=4.6e-14 Score=124.13 Aligned_cols=176 Identities=36% Similarity=0.561 Sum_probs=101.4
Q ss_pred cCCCCCCEEeCCCCCCccCCchhccCCC-CCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746 96 GNLSFLQKLDLRNNSFTNAIPPQIGHLR-RLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ 174 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (281)
..++.++.|++.+|.+. .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+..+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 34455666666666665 4444444443 6666666666665 55555566666666666666666 4454444556666
Q ss_pred EEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746 175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254 (281)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 254 (281)
.|++++|++. .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++. .++..+..++.++.|++++|.
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence 6666666665 44444344445666666666433 34445555666666666666655 334555566666666666666
Q ss_pred ccccCChhhhhCCCCCCEEeccCccC
Q 036746 255 IEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 255 i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++ .++. +. ...+++.|++++|.+
T Consensus 267 i~-~i~~-~~-~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 IS-SISS-LG-SLTNLRELDLSGNSL 289 (394)
T ss_pred cc-cccc-cc-ccCccCEEeccCccc
Confidence 66 3443 22 456666666666544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.45 E-value=2.2e-15 Score=130.89 Aligned_cols=175 Identities=26% Similarity=0.463 Sum_probs=157.3
Q ss_pred CCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEE
Q 036746 97 NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFL 176 (281)
Q Consensus 97 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 176 (281)
.+..-...+++.|.+. .+|..+..+..|+.+.++.|.+. .+|..+.++..|..++++.|+++ .+|..++.++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 4455667889999998 78888888899999999999998 89999999999999999999999 7888887765 8999
Q ss_pred eccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccc
Q 036746 177 STTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256 (281)
Q Consensus 177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~ 256 (281)
.+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 99999987 78988998899999999999998 88889999999999999999998 778888754 7889999999999
Q ss_pred ccCChhhhhCCCCCCEEeccCccCC
Q 036746 257 GEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 257 ~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+|.++. ++..|++|-|.+|+|+
T Consensus 225 -~iPv~fr-~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 -YLPVDFR-KMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ecchhhh-hhhhheeeeeccCCCC
Confidence 8999997 8999999999999985
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=3.4e-13 Score=118.59 Aligned_cols=180 Identities=33% Similarity=0.537 Sum_probs=152.0
Q ss_pred CcEEEEEcCCCCceeecCccccCCC-CCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLS-FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
..++.+++.++.+. .+++....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 56899999999986 5666676774 9999999999998 56667889999999999999999 7888777899999999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++. .++..++.++.++.|++++|.++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-
Confidence 9999999 67776666677999999999644 55667888899999999999887 55778889999999999999998
Q ss_pred ccChhccCCCCCcEEEcccCcccccCChh
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLD 262 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~ 262 (281)
.++. ++.+.+++.|++++|.+....|..
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccc-ccccCccCEEeccCccccccchhh
Confidence 4444 889999999999999988554443
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=2.4e-12 Score=118.90 Aligned_cols=107 Identities=29% Similarity=0.526 Sum_probs=69.9
Q ss_pred CcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEccc
Q 036746 173 LQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGS 252 (281)
Q Consensus 173 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 252 (281)
++.|++.+|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcccccCChhhhhCCCCCCEEeccCcc
Q 036746 253 TYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 253 n~i~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
|+++|.+|..+.....++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 666666666655333455566666654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.6e-13 Score=112.69 Aligned_cols=205 Identities=24% Similarity=0.253 Sum_probs=133.4
Q ss_pred CCcEEEEEcCCCCceeecC--ccccCCCCCCEEeCCCCCCccC--CchhccCCCCCCEEEccCccCcccCCC-CCCCCCC
Q 036746 74 YQRVTILDLQNLKLVGTLS--PHIGNLSFLQKLDLRNNSFTNA--IPPQIGHLRRLQILYLQINSFDGEIPA-STSNCSN 148 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 148 (281)
.+.++.+.+++..+.. .+ .....+++++.|+|+.|-+... +......+|+|+.|+++.|.+.-.... .-..+++
T Consensus 120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3567777777777642 22 2456788888888888866532 223345688888888888887621111 1124678
Q ss_pred CcEEEccCCCCCCC-CCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC--ccCCCCCCCCEEE
Q 036746 149 LLVVSLALNHLVGK-IPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP--DTFGGLKNLVNLS 225 (281)
Q Consensus 149 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~ 225 (281)
|+.|.++.|.++.. +-..+..+|+|+.|.+..|...........-+..|+.|+|++|++. .++ ...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence 88888888888732 2223456788888888888532222223344567888999988876 333 3456788888888
Q ss_pred cccCccccc-cChh-----ccCCCCCcEEEcccCcccccCCh-hhhhCCCCCCEEeccCccCC
Q 036746 226 LVVNNLSGT-IPPS-----IFNISSIQTFDVGSTYIEGEMPL-DLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 226 l~~n~l~~~-~p~~-----l~~l~~L~~L~l~~n~i~~~~p~-~~~~~~~~L~~L~l~~N~lt 281 (281)
++.+.+... .|+. ...+++|+.|++..|+|...-.. .+. .+++|+.|.+.+|.|+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhccccccc
Confidence 888887642 2222 24568889999999988632222 233 5778888887777764
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=9.9e-13 Score=111.21 Aligned_cols=183 Identities=23% Similarity=0.182 Sum_probs=136.0
Q ss_pred cCCCCCCEEeCCCCCCccCCc--hhccCCCCCCEEEccCccCccc--CCCCCCCCCCCcEEEccCCCCCCCCCc-ccCCC
Q 036746 96 GNLSFLQKLDLRNNSFTNAIP--PQIGHLRRLQILYLQINSFDGE--IPASTSNCSNLLVVSLALNHLVGKIPS-EFGSL 170 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l 170 (281)
.++++|+.+.|.++.+. ..+ .....|++++.||++.|-+... +......+++|+.|+++.|++...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56789999999999887 333 3567899999999999988742 234457899999999999998632221 12356
Q ss_pred CCCcEEeccccccccC-CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC--hhccCCCCCcE
Q 036746 171 SKLQFLSTTANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP--PSIFNISSIQT 247 (281)
Q Consensus 171 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~ 247 (281)
+.|+.|.++.|.++.. +-..+..+++|+.|++.+|............++.|++|+|++|++.. .+ ...+.+++|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 8899999999988643 22334567899999999996332333344557889999999999873 33 45678999999
Q ss_pred EEcccCccccc-CChh----hhhCCCCCCEEeccCccC
Q 036746 248 FDVGSTYIEGE-MPLD----LGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 248 L~l~~n~i~~~-~p~~----~~~~~~~L~~L~l~~N~l 280 (281)
|+++.+.|... +|.. ....+++|++|+++.|++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 99999998842 2221 234689999999999987
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2e-11 Score=93.92 Aligned_cols=107 Identities=26% Similarity=0.293 Sum_probs=25.2
Q ss_pred CCCCCCEEEccCccCcccCCCCCC-CCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCccc-CCCCCCC
Q 036746 121 HLRRLQILYLQINSFDGEIPASTS-NCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSSLR 198 (281)
Q Consensus 121 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~ 198 (281)
+..+++.|+|++|.|+ .+. .++ .+.+|+.|++++|.+... +.+..++.|++|++++|.+.. ++..+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 4445666666666665 322 233 355666666666666522 234555556666666665542 22222 2345555
Q ss_pred EEEcccCcCcccC-CccCCCCCCCCEEEcccCccc
Q 036746 199 GLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 199 ~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~ 232 (281)
+|++++|.+...- -..+..+++|+.|++.+|.++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555555554211 123334455555555555544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=6e-12 Score=103.77 Aligned_cols=184 Identities=20% Similarity=0.254 Sum_probs=112.7
Q ss_pred cCCCCCCEEeCCCCCCccCCch----hccCCCCCCEEEccCccCcc----c---------CCCCCCCCCCCcEEEccCCC
Q 036746 96 GNLSFLQKLDLRNNSFTNAIPP----QIGHLRRLQILYLQINSFDG----E---------IPASTSNCSNLLVVSLALNH 158 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~----~---------~~~~~~~l~~L~~L~l~~n~ 158 (281)
...++|++++|+.|.+...-+. -+..+..|++|.+.+|.+.. . ...-...-++|+++.+.+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4455777777777766533222 23456677777777776641 1 11112334667777777777
Q ss_pred CCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEc
Q 036746 159 LVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSL 226 (281)
Q Consensus 159 ~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l 226 (281)
+... +...+...+.|+.+.+..|.+... +...+..+++|++|+|.+|.++.. +...+..+++|+++++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 6522 223455667777777777766421 123466778888888888877632 3455667778888888
Q ss_pred ccCccccccChhcc-----CCCCCcEEEcccCcccccCCh----hhhhCCCCCCEEeccCccC
Q 036746 227 VVNNLSGTIPPSIF-----NISSIQTFDVGSTYIEGEMPL----DLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 227 ~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~i~~~~p~----~~~~~~~~L~~L~l~~N~l 280 (281)
++|.+.......+. ..++|+.|++.+|.|+...-. .+. ..|.|+.|++++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~-ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA-EKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh-cchhhHHhcCCcccc
Confidence 88877643332222 357788888888887743211 222 467788888888876
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=4.9e-11 Score=91.75 Aligned_cols=127 Identities=24% Similarity=0.313 Sum_probs=52.3
Q ss_pred CCCCCCCcEEEccCCCCCCCCCcccC-CCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccC-CCCCC
Q 036746 143 TSNCSNLLVVSLALNHLVGKIPSEFG-SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF-GGLKN 220 (281)
Q Consensus 143 ~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~ 220 (281)
+.+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.+.. + +.+..++.|++|++++|.++ .+...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 3455678999999999983 3 3455 57899999999999974 3 34788999999999999998 444444 35899
Q ss_pred CCEEEcccCccccc-cChhccCCCCCcEEEcccCcccccCCh---hhhhCCCCCCEEec
Q 036746 221 LVNLSLVVNNLSGT-IPPSIFNISSIQTFDVGSTYIEGEMPL---DLGTTLPNLRIFSI 275 (281)
Q Consensus 221 L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~i~~~~p~---~~~~~~~~L~~L~l 275 (281)
|++|++++|++.+. --..++.+++|+.|++.+|+++.. +. .+...+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 99999999999742 124677899999999999999843 32 24457999999975
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1e-11 Score=102.43 Aligned_cols=206 Identities=21% Similarity=0.304 Sum_probs=117.3
Q ss_pred CcEEEEEcCCCCcee----ecCccccCCCCCCEEeCCCCCCcc----CCch-------hccCCCCCCEEEccCccCcccC
Q 036746 75 QRVTILDLQNLKLVG----TLSPHIGNLSFLQKLDLRNNSFTN----AIPP-------QIGHLRRLQILYLQINSFDGEI 139 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~----~~~~-------~~~~l~~L~~L~l~~n~l~~~~ 139 (281)
..++.+++++|.+.. .+...+.+.+.|+..+++.- ++| .+|+ .+-.+++|++|+||.|-+....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 456777777776642 23344555566677666643 222 2232 2335567777777777765333
Q ss_pred CCC----CCCCCCCcEEEccCCCCCCCC-------------CcccCCCCCCcEEeccccccccC----CCcccCCCCCCC
Q 036746 140 PAS----TSNCSNLLVVSLALNHLVGKI-------------PSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLR 198 (281)
Q Consensus 140 ~~~----~~~l~~L~~L~l~~n~~~~~~-------------~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~ 198 (281)
+.. +..+..|++|.+.+|.+...- ......-++|+++...+|.+... +...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 322 345667777777777665211 11234456677777777665421 122345556777
Q ss_pred EEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc----cChhccCCCCCcEEEcccCcccccCChhh----hhC
Q 036746 199 GLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----IPPSIFNISSIQTFDVGSTYIEGEMPLDL----GTT 266 (281)
Q Consensus 199 ~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~i~~~~p~~~----~~~ 266 (281)
.+.+..|.+... +...+..++.|+.||+..|.++.. +...+..+++|+.|++++|.+.......+ ...
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 777777766421 224456677777777777766532 22344456677777777777664433332 235
Q ss_pred CCCCCEEeccCccCC
Q 036746 267 LPNLRIFSITGNQFT 281 (281)
Q Consensus 267 ~~~L~~L~l~~N~lt 281 (281)
.|+|+.|++.+|.+|
T Consensus 269 ~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 269 APSLEVLELAGNEIT 283 (382)
T ss_pred CCCCceeccCcchhH
Confidence 667777777777654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.6e-11 Score=99.67 Aligned_cols=183 Identities=23% Similarity=0.254 Sum_probs=110.2
Q ss_pred cCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcc---cCC--------------------CCCCCCC
Q 036746 91 LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG---EIP--------------------ASTSNCS 147 (281)
Q Consensus 91 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~--------------------~~~~~l~ 147 (281)
+|..+.-+.+|+.+.++.+.-. .+-+....-|.|+++-..+..++. .+| ..+....
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 4445556677777777776433 111111223456666555443321 011 1112234
Q ss_pred CCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746 148 NLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 227 (281)
.|+++++++|.++ .+..+..-.|+++.|+++.|.+... +.+..+.+|+.|++++|.++ .+..+-.++-++++|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 5777788888777 5555666677888888888877522 34777778888888888776 444454566777778888
Q ss_pred cCccccccChhccCCCCCcEEEcccCcccccCC-hhhhhCCCCCCEEeccCccCC
Q 036746 228 VNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP-LDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p-~~~~~~~~~L~~L~l~~N~lt 281 (281)
.|.+. .+ ..+..+-+|..||+.+|+|...-. ..+. .+|.|+.+.+.+|+++
T Consensus 361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccc-cccHHHHHhhcCCCcc
Confidence 87775 22 345566677778888887763111 1233 6777788877777763
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.8e-10 Score=73.19 Aligned_cols=61 Identities=31% Similarity=0.530 Sum_probs=42.3
Q ss_pred CCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 219 KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 219 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++|++|++++|+++...+..+..+++|++|++++|.++ .++.+.+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 35677777777777444456677777777777777776 55555555777777777777764
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=2.1e-11 Score=98.95 Aligned_cols=128 Identities=27% Similarity=0.273 Sum_probs=64.4
Q ss_pred CCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEec
Q 036746 99 SFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLST 178 (281)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (281)
..|+++++++|.++ .+..+..-.|.++.|++++|.+. .+ ..+..+++|+.|++++|.++ .+..+-.++.+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34555566655555 33344444555556666655554 22 22455555555565555554 22333344455555555
Q ss_pred cccccccCCCcccCCCCCCCEEEcccCcCccc-CCccCCCCCCCCEEEcccCccc
Q 036746 179 TANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
+.|.+.. + ..++++-+|..|++++|++... --..+++++.|+.+.+.+|.+.
T Consensus 360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5555431 1 2244555555555555555421 1134555555555555555554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=1e-09 Score=69.64 Aligned_cols=61 Identities=31% Similarity=0.492 Sum_probs=43.7
Q ss_pred CCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI 255 (281)
Q Consensus 195 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i 255 (281)
++|++|++++|.++...+..|.++++|++|++++|.++...|..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777755556777777777777777777766566777777777777777764
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.90 E-value=7.7e-12 Score=112.04 Aligned_cols=180 Identities=24% Similarity=0.264 Sum_probs=126.8
Q ss_pred CccccCCCCCCEEeCCCCCCccCCchhccC-CCCCCEEEccCccCc---ccC---CCCCCC---CCCCcEEEccCCCCCC
Q 036746 92 SPHIGNLSFLQKLDLRNNSFTNAIPPQIGH-LRRLQILYLQINSFD---GEI---PASTSN---CSNLLVVSLALNHLVG 161 (281)
Q Consensus 92 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~---~~~---~~~~~~---l~~L~~L~l~~n~~~~ 161 (281)
|-++..+..|++|.++++.+.. .- .+.. -..|++|.-.+ .+. ..+ ...+++ ...|...++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 5567788999999999998873 11 1211 12355543322 211 001 111221 246788889999887
Q ss_pred CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccC
Q 036746 162 KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241 (281)
Q Consensus 162 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 241 (281)
.+...+.-++.++.|++++|++... +.+..++.|++|||++|.+. .+|..-..-..|..|.+.+|.++ .+ ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHh
Confidence 6667777889999999999999744 47888999999999999998 66643333344999999999997 33 45678
Q ss_pred CCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 242 l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+++|+.||+++|-|.+.-.-...-.+..|+.|+|.||++
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999999999999988754433333567899999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=6.3e-10 Score=98.45 Aligned_cols=125 Identities=26% Similarity=0.314 Sum_probs=64.5
Q ss_pred EEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746 77 VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL 156 (281)
Q Consensus 77 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 156 (281)
+..+.++.+.+.. +-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|.|+.. ..+..++.|+.|++.+
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence 3344444444432 2223555666666666666665 2322245566666666666666522 2233445566666666
Q ss_pred CCCCCCCCcccCCCCCCcEEeccccccccCCC-cccCCCCCCCEEEcccCcCc
Q 036746 157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP-SSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~ 208 (281)
|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 666521 233445666666666666543222 1 344555566666665553
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=2.8e-09 Score=101.33 Aligned_cols=107 Identities=25% Similarity=0.362 Sum_probs=80.6
Q ss_pred CcEEEEEcCCCC--ceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746 75 QRVTILDLQNLK--LVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (281)
+.++.|-+..+. +....+..|..++.|+.||+++|.-.+.+|..++.+-+||+|+++++.+. .+|.++.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 457777777665 33223334677888888888888777788888888888888888888888 888888888888888
Q ss_pred EccCCCCCCCCCcccCCCCCCcEEeccccc
Q 036746 153 SLALNHLVGKIPSEFGSLSKLQFLSTTANN 182 (281)
Q Consensus 153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 182 (281)
++..+.....+|.....+.+|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 888877665556666668888888886543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=1.3e-08 Score=96.77 Aligned_cols=129 Identities=28% Similarity=0.329 Sum_probs=100.3
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC--CccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS--FTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (281)
..++.+.+-++.+. .++... ..+.|++|-+..|. +.......|..++.|++||+++|.--+.+|..++.+.+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 34566666666553 233322 33478999999886 443344457889999999999887767999999999999999
Q ss_pred EccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCc
Q 036746 153 SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG 206 (281)
Q Consensus 153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 206 (281)
+++++.+. .+|.++.++.+|.+|++..+.....+|.....+.+|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999998 899999999999999999877665666667778999999987764
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=2.6e-09 Score=94.56 Aligned_cols=174 Identities=25% Similarity=0.259 Sum_probs=112.4
Q ss_pred CCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcE
Q 036746 72 PRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV 151 (281)
Q Consensus 72 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 151 (281)
.....++.+++.+|.+.... ..+..+++|++|++++|.|.... .+..++.|+.|++++|.++. + ..+..++.|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhhc
Confidence 34478999999999986433 22678999999999999998432 35677889999999999973 2 34556899999
Q ss_pred EEccCCCCCCCCCcc-cCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCC--CCCEEEccc
Q 036746 152 VSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK--NLVNLSLVV 228 (281)
Q Consensus 152 L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~--~L~~L~l~~ 228 (281)
+++++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.++..-+ +.... .|+++++++
T Consensus 167 l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 167 LDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred ccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhccc
Confidence 9999999984433 2 56778888899988877522 223333334444555555542211 11111 255666666
Q ss_pred CccccccChhccCCCCCcEEEcccCccc
Q 036746 229 NNLSGTIPPSIFNISSIQTFDVGSTYIE 256 (281)
Q Consensus 229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~ 256 (281)
|.+. ..+..+..+..+..|++..|++.
T Consensus 242 n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 242 NRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred Cccc-cccccccccccccccchhhcccc
Confidence 6655 22233444555555555555544
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=9.5e-09 Score=83.61 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=108.1
Q ss_pred CCCCCCEEeCCCCCCcc--CCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCC-CCcccCCCCCC
Q 036746 97 NLSFLQKLDLRNNSFTN--AIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGK-IPSEFGSLSKL 173 (281)
Q Consensus 97 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L 173 (281)
...+++.++|.+|.++. .+...+.++|.|++|+++.|.+...+...-....+|++|.+.+..+.-. ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45788999999998874 3445567899999999999998743332224668899999988877633 33456778889
Q ss_pred cEEeccccccccC--CCcccCCC-CCCCEEEcccCcCcc--cCCccCCCCCCCCEEEcccCccccc-cChhccCCCCCcE
Q 036746 174 QFLSTTANNLIGN--IPSSLGNL-SSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGT-IPPSIFNISSIQT 247 (281)
Q Consensus 174 ~~L~l~~n~~~~~--~~~~l~~l-~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~ 247 (281)
++|+++.|.+... ........ +.+++++...|...- .....-...+++..+.+..|.+... .......++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999988854321 11111222 134444444443210 0000011234555566666655321 1122334555556
Q ss_pred EEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 248 L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
|+|+.|+|......+...+++.|..|.+++|++
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 666666666544444445666666666666665
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.48 E-value=8.1e-08 Score=77.35 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=81.8
Q ss_pred CcEEEEEcCCCCceee----cCccccCCCCCCEEeCCCCCCc---cCCc-------hhccCCCCCCEEEccCccCcccCC
Q 036746 75 QRVTILDLQNLKLVGT----LSPHIGNLSFLQKLDLRNNSFT---NAIP-------PQIGHLRRLQILYLQINSFDGEIP 140 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~---~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~ 140 (281)
..++.+++++|.+... +...+.+-.+|+..+++.-... ..++ ..+-+||+|+..++|.|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 3455666666665432 2223344445555555532111 1111 223355666666666666554444
Q ss_pred CC----CCCCCCCcEEEccCCCCCCCCCc-------------ccCCCCCCcEEeccccccccCCCcc-----cCCCCCCC
Q 036746 141 AS----TSNCSNLLVVSLALNHLVGKIPS-------------EFGSLSKLQFLSTTANNLIGNIPSS-----LGNLSSLR 198 (281)
Q Consensus 141 ~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~l~~l~~L~~L~l~~n~~~~~~~~~-----l~~l~~L~ 198 (281)
.. ++..+.|.+|.+++|.+....-. ....-|.|+.+.+..|.+. ..+.. +..-..|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence 33 34445666666666655411111 1123455666666655553 22211 11123555
Q ss_pred EEEcccCcCcccC-----CccCCCCCCCCEEEcccCcccccc----ChhccCCCCCcEEEcccCccccc
Q 036746 199 GLSLSRNGFYGSI-----PDTFGGLKNLVNLSLVVNNLSGTI----PPSIFNISSIQTFDVGSTYIEGE 258 (281)
Q Consensus 199 ~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~l~~n~i~~~ 258 (281)
++.+..|.|...- -..+..+.+|+.|++..|.++... ...+...+.|+.|.+.+|-++..
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 5555555554110 011223455555555555554211 12222334455555555544433
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=5.5e-09 Score=75.49 Aligned_cols=105 Identities=25% Similarity=0.273 Sum_probs=59.5
Q ss_pred CCCEEEccCccCcccCCC---CCCCCCCCcEEEccCCCCCCCCCcccCCC-CCCcEEeccccccccCCCcccCCCCCCCE
Q 036746 124 RLQILYLQINSFDGEIPA---STSNCSNLLVVSLALNHLVGKIPSEFGSL-SKLQFLSTTANNLIGNIPSSLGNLSSLRG 199 (281)
Q Consensus 124 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 199 (281)
.+..++|+.|.+- .+++ .+.....|..+++++|.+. ..|+.|... +.++++++++|++. .+|.++..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455666666654 2332 2334455555666666666 445444333 35666666666665 45655666666666
Q ss_pred EEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 200 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
++++.|.+. ..|+.+..+.++..|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 666666665 45555555555666666555554
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.36 E-value=7.8e-07 Score=51.82 Aligned_cols=40 Identities=55% Similarity=1.002 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHhhcccCCCCCCCCCCCC--CCCCcccceEec
Q 036746 32 ETDRAALLEFKSKITNDALGVLGSWNDS--IHFCQWYGVTCS 71 (281)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~~~ 71 (281)
++|+++|++||+.+..++...+.+|... .++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 4788999999999986677889999887 799999999994
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=1.2e-06 Score=51.22 Aligned_cols=37 Identities=30% Similarity=0.596 Sum_probs=27.6
Q ss_pred CCCCEEEcccCccccccChhccCCCCCcEEEcccCccc
Q 036746 219 KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256 (281)
Q Consensus 219 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~ 256 (281)
++|++|++++|+++ .+|+.++++++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46788888888887 56666788888888888888877
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.6e-09 Score=84.55 Aligned_cols=177 Identities=22% Similarity=0.252 Sum_probs=101.8
Q ss_pred CCCEEeCCCCCCcc-CCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC-CCCCC-CCcccCCCCCCcEE
Q 036746 100 FLQKLDLRNNSFTN-AIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN-HLVGK-IPSEFGSLSKLQFL 176 (281)
Q Consensus 100 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L 176 (281)
.|++|||++..++. .+...+..|.+|+.|.+.++++...+...+.+-.+|+.++++.+ .++.. ..-.+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36777777766652 23344556777777777777777666666667777777777654 23311 11234567777777
Q ss_pred eccccccccCCC-cccCCC-CCCCEEEcccCcCc---ccCCccCCCCCCCCEEEcccCc-cccccChhccCCCCCcEEEc
Q 036746 177 STTANNLIGNIP-SSLGNL-SSLRGLSLSRNGFY---GSIPDTFGGLKNLVNLSLVVNN-LSGTIPPSIFNISSIQTFDV 250 (281)
Q Consensus 177 ~l~~n~~~~~~~-~~l~~l-~~L~~L~l~~n~~~---~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l 250 (281)
+++.+.+..... -.+.+. ++|+.|+++|+.-. ..+.--..++++|.+||+++|. ++......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777765542211 111111 35666777665321 0111112457778888887764 34334455667778888877
Q ss_pred ccCcccccCChhhh--hCCCCCCEEeccCc
Q 036746 251 GSTYIEGEMPLDLG--TTLPNLRIFSITGN 278 (281)
Q Consensus 251 ~~n~i~~~~p~~~~--~~~~~L~~L~l~~N 278 (281)
+-|.. .+|..+. ...|.|.+||+.|+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77752 2344332 35577777777654
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=3.2e-08 Score=71.58 Aligned_cols=87 Identities=23% Similarity=0.338 Sum_probs=52.1
Q ss_pred ccCCCCCCEEeCCCCCCccCCchhcc-CCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCC
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPPQIG-HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKL 173 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 173 (281)
+....+|+..+|++|.+. ..|+.|. .++.++.|++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 444555666666666666 4444443 4456666666666666 66666666666666666666666 445555555566
Q ss_pred cEEeccccccc
Q 036746 174 QFLSTTANNLI 184 (281)
Q Consensus 174 ~~L~l~~n~~~ 184 (281)
..|+...|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 66655555443
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=2.2e-06 Score=50.11 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=20.9
Q ss_pred CCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 196 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 44445566666666666666665
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=1.2e-08 Score=92.08 Aligned_cols=124 Identities=27% Similarity=0.297 Sum_probs=66.7
Q ss_pred CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcc-cCCCCCCcEEecc
Q 036746 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTT 179 (281)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~ 179 (281)
|...+.+.|.+. .+..++.-++.++.|+|++|+++. . +.+..+++|++||+++|.+. .+|.. ...+ .|+.|.+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 444455555554 344445556666666666666652 2 25556666666666666665 33432 1222 26666666
Q ss_pred ccccccCCCcccCCCCCCCEEEcccCcCcccC-CccCCCCCCCCEEEcccCcc
Q 036746 180 ANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNL 231 (281)
Q Consensus 180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l 231 (281)
+|.++.. ..+.++++|+.||+++|-+.+.- -..+..+..|++|+|.+|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6665422 23555666666666666554221 12233455566666666655
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=7e-07 Score=72.08 Aligned_cols=205 Identities=21% Similarity=0.183 Sum_probs=137.9
Q ss_pred CcEEEEEcCCCCc---eeecC-------ccccCCCCCCEEeCCCCCCccCCch----hccCCCCCCEEEccCccCcc---
Q 036746 75 QRVTILDLQNLKL---VGTLS-------PHIGNLSFLQKLDLRNNSFTNAIPP----QIGHLRRLQILYLQINSFDG--- 137 (281)
Q Consensus 75 ~~l~~L~l~~~~l---~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~--- 137 (281)
.+++..+++..-. ...++ +.+.++++|+..+|+.|.+....|. .+.+-..|.+|.+++|.+..
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG 137 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG 137 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch
Confidence 5666666664321 11222 3467889999999999998866554 34567889999999998751
Q ss_pred -cCC---------CCCCCCCCCcEEEccCCCCCCCCC-----cccCCCCCCcEEeccccccccCCC-----cccCCCCCC
Q 036746 138 -EIP---------ASTSNCSNLLVVSLALNHLVGKIP-----SEFGSLSKLQFLSTTANNLIGNIP-----SSLGNLSSL 197 (281)
Q Consensus 138 -~~~---------~~~~~l~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~-----~~l~~l~~L 197 (281)
.+. .-..+-|.|+++++.+|++. ..+ ..+..-..|+++.+..|.+.-... ..+..+.+|
T Consensus 138 ~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L 216 (388)
T COG5238 138 GRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL 216 (388)
T ss_pred hHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence 111 11345588999999999986 222 223444689999999987752211 123456899
Q ss_pred CEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccccChhcc------CCCCCcEEEcccCcccccCChh-----
Q 036746 198 RGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPPSIF------NISSIQTFDVGSTYIEGEMPLD----- 262 (281)
Q Consensus 198 ~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~------~l~~L~~L~l~~n~i~~~~p~~----- 262 (281)
+.|++++|.++-. +...+..++.|++|.+..|-++......+. ..++|..|...+|.+.+.+-..
T Consensus 217 evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~ 296 (388)
T COG5238 217 EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE 296 (388)
T ss_pred eeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhh
Confidence 9999999998732 334556778899999999988644333221 3578888999999877644333
Q ss_pred -hhhCCCCCCEEeccCccC
Q 036746 263 -LGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 263 -~~~~~~~L~~L~l~~N~l 280 (281)
....+|-|..|.+.||.|
T Consensus 297 ~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 297 FEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred hhhcccHHHHHHHHccCcc
Confidence 223567777777888876
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.2e-08 Score=81.54 Aligned_cols=155 Identities=18% Similarity=0.138 Sum_probs=107.1
Q ss_pred CCCEEEccCccCcc-cCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCC--cccCCCCCCCEE
Q 036746 124 RLQILYLQINSFDG-EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP--SSLGNLSSLRGL 200 (281)
Q Consensus 124 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L 200 (281)
.|++|||++..++. .+-.-+..+.+|+.|.+.++++...+...+..-.+|+.|+++.+.-..... --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58899999888873 223345677889999999999987777778888889999998753211111 235678899999
Q ss_pred EcccCcCcccCCc-cCCC-CCCCCEEEcccCcc---ccccChhccCCCCCcEEEcccCc-ccccCChhhhhCCCCCCEEe
Q 036746 201 SLSRNGFYGSIPD-TFGG-LKNLVNLSLVVNNL---SGTIPPSIFNISSIQTFDVGSTY-IEGEMPLDLGTTLPNLRIFS 274 (281)
Q Consensus 201 ~l~~n~~~~~~p~-~~~~-l~~L~~L~l~~n~l---~~~~p~~l~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~L~~L~ 274 (281)
++++|......-. .+.+ -.+|..|+++++.- ...+......++++.+|||++|. ++......++ .++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence 9999987643221 1122 36788888888632 11223344578999999999884 5533334455 789999999
Q ss_pred ccCcc
Q 036746 275 ITGNQ 279 (281)
Q Consensus 275 l~~N~ 279 (281)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 98764
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=5.7e-07 Score=73.47 Aligned_cols=187 Identities=18% Similarity=0.130 Sum_probs=117.1
Q ss_pred cccCCCCCCEEeCCCCCCccC-Cchhc-cCCCCCCEEEccCccCcc--cCCCCCCCCCCCcEEEccCCCCCCCCCcccCC
Q 036746 94 HIGNLSFLQKLDLRNNSFTNA-IPPQI-GHLRRLQILYLQINSFDG--EIPASTSNCSNLLVVSLALNHLVGKIPSEFGS 169 (281)
Q Consensus 94 ~~~~l~~L~~L~l~~n~l~~~-~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 169 (281)
.+.....++.+.+.++.+... ....| ..+..++.+|+.+|.++. .+...+.++|.|+.|+++.|.+...+-..-..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 344445566777777766421 11123 246789999999999983 34455678999999999999988433222245
Q ss_pred CCCCcEEeccccccccCCC-cccCCCCCCCEEEcccCcCccc--CCccCCCC-CCCCEEEcccCcccc--ccChhccCCC
Q 036746 170 LSKLQFLSTTANNLIGNIP-SSLGNLSSLRGLSLSRNGFYGS--IPDTFGGL-KNLVNLSLVVNNLSG--TIPPSIFNIS 243 (281)
Q Consensus 170 l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~--~p~~~~~l-~~L~~L~l~~n~l~~--~~p~~l~~l~ 243 (281)
..+|+.|-+.+..+..... ..+..++.+++|+++.|.+... ..+..... +.+++|.+-.|.... .....-.-++
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 6789999999887764432 3455678888999998855321 11122222 245555555543321 1111122456
Q ss_pred CCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 244 SIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 244 ~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++..+-+..|++...-...-+..+|.+..|+++.|+|
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i 236 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI 236 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhccccc
Confidence 7888888888887554444445678888888888776
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.7e-05 Score=68.78 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=76.3
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCc-cCcccCCCCCCCCCCCcEEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN-SFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 153 (281)
..++.|++++|.+. .+|. + -++|++|.+++|.-...+|..+ .++|++|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 56778888888764 3442 2 1358888888755444566554 357888888887 444 4554 466666
Q ss_pred ccCCCCCCCCCcccCCCC-CCcEEeccccccc--cCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccC
Q 036746 154 LALNHLVGKIPSEFGSLS-KLQFLSTTANNLI--GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVN 229 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 229 (281)
+..+... .+..+| +|+.|.+.++... ...|.. -.++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 119 L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCc-----ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 6655432 122232 3666666432211 111211 1257888888887765 3443333 57788887765
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=9.3e-07 Score=82.35 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=61.4
Q ss_pred CCCCcEEEccCCCCCC-CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcc-cCCccCCCCCCCCE
Q 036746 146 CSNLLVVSLALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG-SIPDTFGGLKNLVN 223 (281)
Q Consensus 146 l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~ 223 (281)
+|+|++|.+++-.+.. .......++|+|+.||+++..+... ..++.+++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4666666665544431 1223344556666666666555422 335556666666655544432 11123445666666
Q ss_pred EEcccCcccccc------ChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCE
Q 036746 224 LSLVVNNLSGTI------PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRI 272 (281)
Q Consensus 224 L~l~~n~l~~~~------p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~ 272 (281)
||+|........ -..-..+++|+.||.+++.+.+.+-..+....|+|+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 666655443211 0111235666666666666655444444433444443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=1.1e-05 Score=62.38 Aligned_cols=103 Identities=25% Similarity=0.272 Sum_probs=53.3
Q ss_pred CCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCC-CcccCCCCCCcEEec
Q 036746 100 FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKI-PSEFGSLSKLQFLST 178 (281)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l 178 (281)
+...++|++|.+. . -..|.+++.|.+|.+.+|+|+..-|.--..+++|+.|.+.+|.+.... -..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4556666666665 2 234566666677777777766333333333456666666666665210 123445566666666
Q ss_pred cccccccC---CCcccCCCCCCCEEEccc
Q 036746 179 TANNLIGN---IPSSLGNLSSLRGLSLSR 204 (281)
Q Consensus 179 ~~n~~~~~---~~~~l~~l~~L~~L~l~~ 204 (281)
-+|..... ---.+..+++|+.||.+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 55544311 011234455555555544
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=4.3e-06 Score=77.98 Aligned_cols=133 Identities=20% Similarity=0.329 Sum_probs=93.3
Q ss_pred CCCcEEEccCCCCC-CCCCccc-CCCCCCcEEeccccccccC-CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCE
Q 036746 147 SNLLVVSLALNHLV-GKIPSEF-GSLSKLQFLSTTANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223 (281)
Q Consensus 147 ~~L~~L~l~~n~~~-~~~~~~l-~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 223 (281)
.+|++|++++...- ..-|..+ ..+|+|+.|.+++-.+... +.....++++|..||+++.+++ .+ ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 57888888775432 1122233 3579999999998766422 2344567899999999999987 33 67889999999
Q ss_pred EEcccCcccc-ccChhccCCCCCcEEEcccCccccc--CCh---hhhhCCCCCCEEeccCccCC
Q 036746 224 LSLVVNNLSG-TIPPSIFNISSIQTFDVGSTYIEGE--MPL---DLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 224 L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~i~~~--~p~---~~~~~~~~L~~L~l~~N~lt 281 (281)
|.+.+=.+.. ..-..+.++++|+.||+|....... +.. +....+|+|+.||.|+..++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9887766652 2224677899999999998765421 111 22347899999999987653
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=8e-05 Score=64.75 Aligned_cols=137 Identities=16% Similarity=0.193 Sum_probs=88.7
Q ss_pred ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (281)
+..+.+++.|++++|.+. .+| . -.++|+.|.+++|.--..+|..+. ++|++|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 455688999999999887 556 2 234799999998554346676553 6899999998833224553 467
Q ss_pred EEeccccccc--cCCCcccCCCCCCCEEEcccCcCc--ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEc
Q 036746 175 FLSTTANNLI--GNIPSSLGNLSSLRGLSLSRNGFY--GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDV 250 (281)
Q Consensus 175 ~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 250 (281)
.|++..+... +.+|. +|+.|.+.+++.. ..+|..+ .++|+.|++++|... .+|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 7777655432 22333 5677777543311 1112111 268999999998876 4554443 58999999
Q ss_pred ccCc
Q 036746 251 GSTY 254 (281)
Q Consensus 251 ~~n~ 254 (281)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8763
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=3.9e-05 Score=59.47 Aligned_cols=126 Identities=21% Similarity=0.141 Sum_probs=84.1
Q ss_pred CCEEeCCCCCCccCCchhcc-CCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecc
Q 036746 101 LQKLDLRNNSFTNAIPPQIG-HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTT 179 (281)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 179 (281)
=+.+++++.++. .+.. ++ -..+...+|+++|.+. --+.|..++.|++|.+++|.++..-|..-..+++|..|.+.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 466777776654 1111 22 2356778899998875 23556778889999999999985555444556789999999
Q ss_pred ccccccC-CCcccCCCCCCCEEEcccCcCcccC---CccCCCCCCCCEEEcccCc
Q 036746 180 ANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSI---PDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 180 ~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~~n~ 230 (281)
+|++... .-+-+..++.|++|.+-+|+....- .-.+..+++|+.||+..-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8887622 1133567788888888888876321 1234567888888876543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.78 E-value=0.00015 Score=52.98 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=42.5
Q ss_pred CCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCC
Q 036746 143 TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV 222 (281)
Q Consensus 143 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 222 (281)
|.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +.......+..+++++.+.+.+ .+.......+..+++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33344444444432 222222333444445555555442 2222223344554555555543 22212234455566666
Q ss_pred EEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCC
Q 036746 223 NLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLR 271 (281)
Q Consensus 223 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~ 271 (281)
.+.+..+ +.......+.+. +++.+.+.. .+. .++...+.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 6666544 332333445554 667776655 333 45555555666654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.54 E-value=0.00067 Score=49.55 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=47.1
Q ss_pred hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCC
Q 036746 118 QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197 (281)
Q Consensus 118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 197 (281)
.|.++.+|+.+.+.. .+...-...|..+++|+.+.+..+ +.......|..+++++.+.+.. .........+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555566666553 333233344555556666666553 4323334455565666666654 2221222345556666
Q ss_pred CEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCC
Q 036746 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSI 245 (281)
Q Consensus 198 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 245 (281)
+.+.+..+ +.......+.+. .++.+.+.. .+...-...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666554 332334455555 666666654 3322333445555444
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=9.8e-05 Score=59.48 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=37.8
Q ss_pred cCCCCCCCEEEcccC--cCcccCCccCCCCCCCCEEEcccCcccc-ccChhccCCCCCcEEEcccCcccccCC--hhhhh
Q 036746 191 LGNLSSLRGLSLSRN--GFYGSIPDTFGGLKNLVNLSLVVNNLSG-TIPPSIFNISSIQTFDVGSTYIEGEMP--LDLGT 265 (281)
Q Consensus 191 l~~l~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~i~~~~p--~~~~~ 265 (281)
+..+++|+.|.++.| ++++.++.....+++|+++++++|++.. .--..+..+.+|..||+.+|..+..-- ..++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 334455555555555 3333333333344555555555555541 000112334455566666655442110 12334
Q ss_pred CCCCCCEEe
Q 036746 266 TLPNLRIFS 274 (281)
Q Consensus 266 ~~~~L~~L~ 274 (281)
-+++|++||
T Consensus 141 ll~~L~~LD 149 (260)
T KOG2739|consen 141 LLPSLKYLD 149 (260)
T ss_pred Hhhhhcccc
Confidence 455555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=5.6e-05 Score=60.85 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=19.1
Q ss_pred ccCCCCCCEEEccCc--cCcccCCCCCCCCCCCcEEEccCCCCC
Q 036746 119 IGHLRRLQILYLQIN--SFDGEIPASTSNCSNLLVVSLALNHLV 160 (281)
Q Consensus 119 ~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (281)
|..+++|++|.++.| .+.+.++.....+++|++++++.|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334445555555555 333333333333455555555555544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=1.4e-05 Score=64.94 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=60.1
Q ss_pred CCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccC-CccCCCCCCCCEE
Q 036746 146 CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNL 224 (281)
Q Consensus 146 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L 224 (281)
+.+.+.|++-++.+..+ .....|+.|++|.++.|+++.. ..+..+++|++|+|..|.|.+.- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34555666666665522 2335667777777777777533 23666777777777777765221 1345667777777
Q ss_pred EcccCccccccCh-----hccCCCCCcEEE
Q 036746 225 SLVVNNLSGTIPP-----SIFNISSIQTFD 249 (281)
Q Consensus 225 ~l~~n~l~~~~p~-----~l~~l~~L~~L~ 249 (281)
.|..|.-.+.-+. .+.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777766554432 344566666665
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=5.5e-05 Score=61.55 Aligned_cols=100 Identities=23% Similarity=0.198 Sum_probs=78.0
Q ss_pred CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC--hhccCCCCCcE
Q 036746 170 LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP--PSIFNISSIQT 247 (281)
Q Consensus 170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~ 247 (281)
+.+.+.|+++++.+... ....+|+.|++|.|+-|.|+..- .+..+++|++|+|..|.|.+ +. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 55677888998887632 23457889999999999998433 46789999999999998873 32 35678999999
Q ss_pred EEcccCcccccCChh----hhhCCCCCCEEe
Q 036746 248 FDVGSTYIEGEMPLD----LGTTLPNLRIFS 274 (281)
Q Consensus 248 L~l~~n~i~~~~p~~----~~~~~~~L~~L~ 274 (281)
|-|..|+..|..+.. +...+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999988776654 345789999986
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.41 E-value=1.2e-05 Score=71.95 Aligned_cols=87 Identities=26% Similarity=0.390 Sum_probs=44.1
Q ss_pred CCCCCEEEcccCcCccc----CCccCCCCCC-CCEEEcccCccccc----cChhccCC-CCCcEEEcccCcccccCChhh
Q 036746 194 LSSLRGLSLSRNGFYGS----IPDTFGGLKN-LVNLSLVVNNLSGT----IPPSIFNI-SSIQTFDVGSTYIEGEMPLDL 263 (281)
Q Consensus 194 l~~L~~L~l~~n~~~~~----~p~~~~~l~~-L~~L~l~~n~l~~~----~p~~l~~l-~~L~~L~l~~n~i~~~~p~~~ 263 (281)
..++++|.+.+|.++.. ....+...+. +.++++..|.+.+. +.+.+..+ .+++.++++.|.|++....++
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44566666666655421 1122333333 55566666665432 22333333 455666677766665444332
Q ss_pred h---hCCCCCCEEeccCccC
Q 036746 264 G---TTLPNLRIFSITGNQF 280 (281)
Q Consensus 264 ~---~~~~~L~~L~l~~N~l 280 (281)
. ..++.++.+.++.|++
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhhhHHHHHhhcccCcc
Confidence 2 2455666666666655
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.003 Score=30.67 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=10.0
Q ss_pred CCEEEccCccCcccCCCCCC
Q 036746 125 LQILYLQINSFDGEIPASTS 144 (281)
Q Consensus 125 L~~L~l~~n~l~~~~~~~~~ 144 (281)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.60 E-value=0.00063 Score=61.32 Aligned_cols=110 Identities=22% Similarity=0.113 Sum_probs=44.4
Q ss_pred CCCCCEEeCCCCCCccC--CchhccCCCCCCEEEccCc-cCcccCC----CCCCCCCCCcEEEccCCC-CCCCCCcccC-
Q 036746 98 LSFLQKLDLRNNSFTNA--IPPQIGHLRRLQILYLQIN-SFDGEIP----ASTSNCSNLLVVSLALNH-LVGKIPSEFG- 168 (281)
Q Consensus 98 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-~~~~~~~~l~- 168 (281)
.+.|+.+.+..+.-... .......++.|+.|+++++ ......+ .....+.+|+.++++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555433222 1223334555666665542 1110111 112233555555555554 3321111111
Q ss_pred CCCCCcEEeccccc-cccC-CCcccCCCCCCCEEEcccCcC
Q 036746 169 SLSKLQFLSTTANN-LIGN-IPSSLGNLSSLRGLSLSRNGF 207 (281)
Q Consensus 169 ~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~~ 207 (281)
.+++|+.|.+.++. ++.. +-.....+++|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 24555555544443 2211 111122344566666655543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.34 E-value=0.0067 Score=29.40 Aligned_cols=11 Identities=45% Similarity=0.425 Sum_probs=4.6
Q ss_pred CEEEcccCccc
Q 036746 222 VNLSLVVNNLS 232 (281)
Q Consensus 222 ~~L~l~~n~l~ 232 (281)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.83 E-value=0.0093 Score=53.70 Aligned_cols=130 Identities=22% Similarity=0.144 Sum_probs=57.6
Q ss_pred CCCCcEEEccCCCCCCC--CCcccCCCCCCcEEecccc-ccccCCC----cccCCCCCCCEEEcccCc-CcccCCccCC-
Q 036746 146 CSNLLVVSLALNHLVGK--IPSEFGSLSKLQFLSTTAN-NLIGNIP----SSLGNLSSLRGLSLSRNG-FYGSIPDTFG- 216 (281)
Q Consensus 146 l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~----~~l~~l~~L~~L~l~~n~-~~~~~p~~~~- 216 (281)
.+.|+.+.+..+.-... +-+....++.|+.|+++++ ......+ .....+.+|+.++++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555554432212 2233445566666666542 1111111 122233556666666665 3322222222
Q ss_pred CCCCCCEEEcccCc-cccc-cChhccCCCCCcEEEcccCccc-ccCChhhhhCCCCCCEEec
Q 036746 217 GLKNLVNLSLVVNN-LSGT-IPPSIFNISSIQTFDVGSTYIE-GEMPLDLGTTLPNLRIFSI 275 (281)
Q Consensus 217 ~l~~L~~L~l~~n~-l~~~-~p~~l~~l~~L~~L~l~~n~i~-~~~p~~~~~~~~~L~~L~l 275 (281)
.+++|+.|.+..+. +++. +-.....++.|++|+++++... +..-..+..++++++.|.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 25566666655554 3422 1222334556666666665432 2211222334555555443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.56 E-value=0.024 Score=25.54 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=4.4
Q ss_pred CCcEEEcccCccc
Q 036746 244 SIQTFDVGSTYIE 256 (281)
Q Consensus 244 ~L~~L~l~~n~i~ 256 (281)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.35 E-value=0.041 Score=27.71 Aligned_cols=22 Identities=9% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCCCcEEEcccCcccccCChhhh
Q 036746 242 ISSIQTFDVGSTYIEGEMPLDLG 264 (281)
Q Consensus 242 l~~L~~L~l~~n~i~~~~p~~~~ 264 (281)
+++|+.|++++|.|. .+|.+++
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 357788888888888 7777665
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.35 E-value=0.041 Score=27.71 Aligned_cols=22 Identities=9% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCCCcEEEcccCcccccCChhhh
Q 036746 242 ISSIQTFDVGSTYIEGEMPLDLG 264 (281)
Q Consensus 242 l~~L~~L~l~~n~i~~~~p~~~~ 264 (281)
+++|+.|++++|.|. .+|.+++
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 357788888888888 7777665
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.49 E-value=0.0014 Score=52.24 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=71.8
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV 152 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (281)
.+.+++.||++.+++. .+...|..+..+..|+++.|.+. -.|..+.....++.+++..|+.+ ..|.++...++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4578999999998875 44455777788899999999887 68888888889999999999988 889999999999999
Q ss_pred EccCCCCC
Q 036746 153 SLALNHLV 160 (281)
Q Consensus 153 ~l~~n~~~ 160 (281)
+...|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99888765
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.85 E-value=0.00044 Score=62.07 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCcc----cCCc----cCCCCCCCCEEEcccCcccccc----
Q 036746 172 KLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYG----SIPD----TFGGLKNLVNLSLVVNNLSGTI---- 235 (281)
Q Consensus 172 ~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~p~----~~~~l~~L~~L~l~~n~l~~~~---- 235 (281)
.++.|.+..|.++.. +++.+.....++.++++.|.+.. .++. .+....++++|++.+|.++...
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 344455554544322 22334445566667776666531 1222 3345788999999999887321
Q ss_pred ChhccCCCC-CcEEEcccCcccccCChhhhh---CC-CCCCEEeccCccCC
Q 036746 236 PPSIFNISS-IQTFDVGSTYIEGEMPLDLGT---TL-PNLRIFSITGNQFT 281 (281)
Q Consensus 236 p~~l~~l~~-L~~L~l~~n~i~~~~p~~~~~---~~-~~L~~L~l~~N~lt 281 (281)
...+...++ +..|++..|.+.+..-..+.. .+ +.++.++++.|.|+
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 223444455 677999999988543333222 33 56699999999875
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.92 E-value=0.0027 Score=50.65 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=69.1
Q ss_pred cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCC
Q 036746 165 SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISS 244 (281)
Q Consensus 165 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 244 (281)
..+......+.||++.|.+. .+...++.++.+..++++.|++. ..|..++....++.++...|... ..|.++...++
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34556677788888888765 45566777778888888888886 77888887777788887777776 67888888888
Q ss_pred CcEEEcccCcccc
Q 036746 245 IQTFDVGSTYIEG 257 (281)
Q Consensus 245 L~~L~l~~n~i~~ 257 (281)
++.+++.+|.+..
T Consensus 113 ~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 113 PKKNEQKKTEFFR 125 (326)
T ss_pred cchhhhccCcchH
Confidence 8888888887763
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.32 E-value=0.11 Score=25.59 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=8.7
Q ss_pred CCCcEEEcccCcccccC
Q 036746 243 SSIQTFDVGSTYIEGEM 259 (281)
Q Consensus 243 ~~L~~L~l~~n~i~~~~ 259 (281)
++|++|++++|+|++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45666666666665433
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.83 E-value=0.37 Score=24.35 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=7.1
Q ss_pred CCCCEEeccCccC
Q 036746 268 PNLRIFSITGNQF 280 (281)
Q Consensus 268 ~~L~~L~l~~N~l 280 (281)
.+|+.|+++.|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.43 E-value=0.087 Score=41.31 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=19.7
Q ss_pred CCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccc
Q 036746 147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN 182 (281)
Q Consensus 147 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 182 (281)
..++.++-++..+..+--+.+..++.++.|.+.+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 445666666666554433445555555555555544
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.69 E-value=0.54 Score=24.11 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=8.1
Q ss_pred CCCCEEeccCccC
Q 036746 268 PNLRIFSITGNQF 280 (281)
Q Consensus 268 ~~L~~L~l~~N~l 280 (281)
++|++|||++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4566666666665
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.60 E-value=0.25 Score=43.03 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=70.9
Q ss_pred CCCCCEEEccCccC-cccC-CCCCCCCCCCcEEEccCCCCCCCCC--cccCCCCCCcEEeccccccccCCC-ccc-CCCC
Q 036746 122 LRRLQILYLQINSF-DGEI-PASTSNCSNLLVVSLALNHLVGKIP--SEFGSLSKLQFLSTTANNLIGNIP-SSL-GNLS 195 (281)
Q Consensus 122 l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~-~~l-~~l~ 195 (281)
+..+..+++.+|.. +.+- -..-..+..|+.++.+++...+..+ ..-.+.++|+++.+..++.-+... ..+ .+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 44556666555532 2110 0111235667777766654321111 112345677777776665321111 111 2345
Q ss_pred CCCEEEcccCcCc--ccCCccCCCCCCCCEEEcccCcc-ccc----cChhccCCCCCcEEEcccCcccccCChhhhhCCC
Q 036746 196 SLRGLSLSRNGFY--GSIPDTFGGLKNLVNLSLVVNNL-SGT----IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLP 268 (281)
Q Consensus 196 ~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l-~~~----~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~ 268 (281)
.|+.+++..+... +.+.+.-.+++.|+++.++++.. ++. +...-..+..++.+.+++++....--......++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 5666666655432 11222333556666666666543 211 0111223455666666666533221112223556
Q ss_pred CCCEEeccCc
Q 036746 269 NLRIFSITGN 278 (281)
Q Consensus 269 ~L~~L~l~~N 278 (281)
+|+.+++.++
T Consensus 427 ~Leri~l~~~ 436 (483)
T KOG4341|consen 427 NLERIELIDC 436 (483)
T ss_pred ccceeeeech
Confidence 6666665543
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.00 E-value=0.49 Score=41.32 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=58.8
Q ss_pred CCCCCcEEeccccccccCCC-ccc-CCCCCCCEEEcccCcC-cccCCccC-CCCCCCCEEEcccCccc--cccChhccCC
Q 036746 169 SLSKLQFLSTTANNLIGNIP-SSL-GNLSSLRGLSLSRNGF-YGSIPDTF-GGLKNLVNLSLVVNNLS--GTIPPSIFNI 242 (281)
Q Consensus 169 ~l~~L~~L~l~~n~~~~~~~-~~l-~~l~~L~~L~l~~n~~-~~~~p~~~-~~l~~L~~L~l~~n~l~--~~~p~~l~~l 242 (281)
.+..|+.++.+++...+..+ ..+ .+..+|+.+.+.+++- +..-...+ .++..|+.+++..+... +.+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45667777776654322211 112 2446788888877753 21111222 24677777777766542 1122233356
Q ss_pred CCCcEEEcccCc-ccccCC---hhhhhCCCCCCEEeccCccC
Q 036746 243 SSIQTFDVGSTY-IEGEMP---LDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 243 ~~L~~L~l~~n~-i~~~~p---~~~~~~~~~L~~L~l~~N~l 280 (281)
+.|+.+.++.+. |++..- .....++..|+.+.+++++.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 778888887764 332211 11112455677777776654
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.02 E-value=0.47 Score=37.35 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=57.0
Q ss_pred CCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc-cChhcc-CCCCCcEEEcccC-cccccCChhhhhCCCCCCE
Q 036746 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT-IPPSIF-NISSIQTFDVGST-YIEGEMPLDLGTTLPNLRI 272 (281)
Q Consensus 196 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~l~-~l~~L~~L~l~~n-~i~~~~p~~~~~~~~~L~~ 272 (281)
.++.++.++..+...--+.+.+++.++.|.+..+.--+. --..++ -.++|+.|++++| .|++..-..+. .+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence 478899899888766666777888888888877753221 111111 3478999999999 57754444554 7899999
Q ss_pred EeccC
Q 036746 273 FSITG 277 (281)
Q Consensus 273 L~l~~ 277 (281)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 88765
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.81 E-value=1.8 Score=21.80 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=8.9
Q ss_pred CCCEEEccCccCcccCC
Q 036746 124 RLQILYLQINSFDGEIP 140 (281)
Q Consensus 124 ~L~~L~l~~n~l~~~~~ 140 (281)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4556666666655 444
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.77 E-value=2.2 Score=38.70 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=5.6
Q ss_pred CCCCEEEcccC
Q 036746 195 SSLRGLSLSRN 205 (281)
Q Consensus 195 ~~L~~L~l~~n 205 (281)
+.|..|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44555555555
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.32 E-value=2.7 Score=38.20 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCCCCCEEEcccCcCccc--CCccCCCCCCCCEEEcccC--ccccccChhccC--CCCCcEEEcccCcccccCCh-----
Q 036746 193 NLSSLRGLSLSRNGFYGS--IPDTFGGLKNLVNLSLVVN--NLSGTIPPSIFN--ISSIQTFDVGSTYIEGEMPL----- 261 (281)
Q Consensus 193 ~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n--~l~~~~p~~l~~--l~~L~~L~l~~n~i~~~~p~----- 261 (281)
+.+.+..+.+++|++... +-..-...++|..|+|++| .+.. ...+.+ ...|++|-+.+|++....-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 445677788888887522 1122234678888888888 3321 222332 34577888888887743211
Q ss_pred -hhhhCCCCCCEEe
Q 036746 262 -DLGTTLPNLRIFS 274 (281)
Q Consensus 262 -~~~~~~~~L~~L~ 274 (281)
.+.+.+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2334678887775
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.08 E-value=5.3 Score=19.81 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=9.3
Q ss_pred CCCCCEEeccCcc
Q 036746 267 LPNLRIFSITGNQ 279 (281)
Q Consensus 267 ~~~L~~L~l~~N~ 279 (281)
+++|+.|++++++
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4677888887764
No 90
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.54 E-value=13 Score=25.49 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 036746 1 MSWLIFSFQALAFCFSVPEF 20 (281)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (281)
|.=++|++..++++.++...
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 66566666655544443333
No 91
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=29.11 E-value=78 Score=19.48 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=16.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhhcccccCCCCHh
Q 036746 1 MSWLIFSFQALAFCFSVPEFLGASAFSVSGNET 33 (281)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (281)
|+-++| +.+++..++++ .+.++|+-+.+.+.
T Consensus 1 MA~Kl~-vialLC~aLva-~vQ~APQYa~GeeP 31 (65)
T PF10731_consen 1 MASKLI-VIALLCVALVA-IVQSAPQYAPGEEP 31 (65)
T ss_pred Ccchhh-HHHHHHHHHHH-HHhcCcccCCCCCC
Confidence 444443 33444444444 55667777776653
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.12 E-value=57 Score=36.20 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=24.7
Q ss_pred EcCCCCceeecCccccCCCCCCEEeCCCCCCc
Q 036746 81 DLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFT 112 (281)
Q Consensus 81 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 112 (281)
||++|+|....+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46778887666667778888888888888776
Done!