Query 036746
Match_columns 281
No_of_seqs 241 out of 3759
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-39 1.3E-43 273.3 19.0 248 29-280 2-280 (313)
2 4eco_A Uncharacterized protein 100.0 7.4E-36 2.5E-40 275.7 14.0 246 30-281 27-390 (636)
3 4fcg_A Uncharacterized protein 100.0 9.3E-36 3.2E-40 254.1 13.2 250 25-280 19-289 (328)
4 3rgz_A Protein brassinosteroid 100.0 2.6E-34 9E-39 270.8 20.8 247 27-280 6-306 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 1.6E-33 5.4E-38 266.0 14.8 245 30-281 266-632 (876)
6 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-31 7.8E-36 225.5 12.7 202 75-279 76-302 (313)
7 3rgz_A Protein brassinosteroid 100.0 1.4E-30 4.8E-35 245.4 17.9 206 75-281 442-717 (768)
8 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-29 5.7E-34 211.2 22.2 206 75-281 32-238 (285)
9 2o6q_A Variable lymphocyte rec 100.0 2.2E-29 7.5E-34 208.9 21.9 217 60-281 2-218 (270)
10 3zyi_A Leucine-rich repeat-con 100.0 1.4E-28 4.6E-33 218.6 20.9 203 75-280 75-302 (452)
11 4fcg_A Uncharacterized protein 100.0 5.1E-29 1.7E-33 212.4 17.0 202 74-280 103-313 (328)
12 2z66_A Variable lymphocyte rec 100.0 9.9E-29 3.4E-33 208.5 16.7 205 75-280 28-260 (306)
13 2z62_A TOLL-like receptor 4, v 100.0 8.5E-28 2.9E-32 199.9 18.0 205 75-281 28-237 (276)
14 3zyj_A Leucine-rich repeat-con 100.0 2E-27 6.8E-32 210.4 20.8 202 76-280 65-291 (440)
15 2z66_A Variable lymphocyte rec 100.0 9E-28 3.1E-32 202.7 16.3 185 74-259 77-264 (306)
16 3v47_A TOLL-like receptor 5B a 100.0 3E-27 1E-31 209.9 19.1 113 167-280 295-407 (455)
17 3v47_A TOLL-like receptor 5B a 100.0 2.9E-27 1E-31 210.0 18.9 207 74-281 78-384 (455)
18 2ft3_A Biglycan; proteoglycan, 100.0 8E-27 2.7E-31 199.1 20.9 215 62-281 32-277 (332)
19 2z80_A TOLL-like receptor 2, v 100.0 5.7E-28 1.9E-32 208.0 13.7 204 76-281 53-314 (353)
20 3zyj_A Leucine-rich repeat-con 100.0 7E-27 2.4E-31 206.9 20.8 182 74-257 87-293 (440)
21 3zyi_A Leucine-rich repeat-con 100.0 8.5E-27 2.9E-31 207.1 20.5 183 73-257 97-304 (452)
22 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-26 9.8E-31 191.5 21.8 200 78-281 14-214 (285)
23 1xku_A Decorin; proteoglycan, 99.9 1.9E-26 6.6E-31 196.5 20.9 215 62-281 30-276 (330)
24 1p9a_G Platelet glycoprotein I 99.9 3.6E-26 1.2E-30 191.4 21.0 200 74-281 9-208 (290)
25 2id5_A Lingo-1, leucine rich r 99.9 2E-26 7E-31 205.9 20.5 206 74-280 55-284 (477)
26 2z80_A TOLL-like receptor 2, v 99.9 2.1E-27 7.1E-32 204.4 12.5 186 73-260 74-318 (353)
27 2id5_A Lingo-1, leucine rich r 99.9 1.7E-26 5.7E-31 206.4 18.7 207 75-281 32-261 (477)
28 3oja_B Anopheles plasmodium-re 99.9 1.9E-26 6.6E-31 211.5 19.2 203 75-280 75-336 (597)
29 3o6n_A APL1; leucine-rich repe 99.9 4.3E-26 1.5E-30 198.7 19.9 202 75-280 69-330 (390)
30 3o6n_A APL1; leucine-rich repe 99.9 4.3E-26 1.5E-30 198.7 18.4 135 75-209 45-179 (390)
31 1xku_A Decorin; proteoglycan, 99.9 6E-26 2E-30 193.5 18.8 203 73-281 74-306 (330)
32 3oja_B Anopheles plasmodium-re 99.9 6.6E-26 2.3E-30 208.0 19.9 205 75-281 51-314 (597)
33 1wwl_A Monocyte differentiatio 99.9 2.2E-27 7.4E-32 201.0 9.2 201 74-281 94-309 (312)
34 3t6q_A CD180 antigen; protein- 99.9 7.1E-26 2.4E-30 208.0 18.6 204 75-280 350-559 (606)
35 3m19_A Variable lymphocyte rec 99.9 1.8E-25 6.2E-30 183.3 19.0 192 61-258 3-194 (251)
36 3vq2_A TLR4, TOLL-like recepto 99.9 4.7E-26 1.6E-30 209.2 17.1 206 73-281 348-558 (606)
37 4eco_A Uncharacterized protein 99.9 4E-27 1.4E-31 217.4 10.0 204 73-281 247-470 (636)
38 3t6q_A CD180 antigen; protein- 99.9 2.3E-25 7.7E-30 204.7 20.9 205 75-280 301-512 (606)
39 3rfs_A Internalin B, repeat mo 99.9 2.5E-25 8.4E-30 184.7 17.7 194 75-280 41-234 (272)
40 2o6q_A Variable lymphocyte rec 99.9 1E-24 3.5E-29 180.8 21.2 184 75-258 37-220 (270)
41 2z81_A CD282 antigen, TOLL-lik 99.9 4.9E-26 1.7E-30 206.7 14.1 205 75-280 26-235 (549)
42 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-25 6.6E-30 205.1 17.7 203 75-281 328-534 (606)
43 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-24 3.7E-29 202.8 22.1 204 76-280 382-596 (680)
44 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-25 1.7E-29 198.8 18.1 89 192-280 321-411 (520)
45 3m19_A Variable lymphocyte rec 99.9 1.9E-24 6.4E-29 177.3 19.8 179 99-281 14-192 (251)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8E-25 2.7E-29 199.4 19.3 89 192-280 350-440 (562)
47 4glp_A Monocyte differentiatio 99.9 9E-26 3.1E-30 190.8 12.0 200 75-281 91-307 (310)
48 2z7x_B TOLL-like receptor 1, v 99.9 3.1E-25 1.1E-29 200.2 16.1 65 216-281 321-387 (520)
49 3j0a_A TOLL-like receptor 5; m 99.9 5.3E-25 1.8E-29 209.4 18.2 110 75-184 48-161 (844)
50 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-24 4.2E-29 185.5 18.5 204 73-281 76-307 (332)
51 2xwt_C Thyrotropin receptor; s 99.9 8E-25 2.7E-29 178.2 16.6 198 75-279 31-237 (239)
52 1wwl_A Monocyte differentiatio 99.9 2.5E-27 8.5E-32 200.6 1.5 200 77-281 65-287 (312)
53 3rfs_A Internalin B, repeat mo 99.9 2.5E-24 8.4E-29 178.7 18.6 195 80-281 24-218 (272)
54 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5.1E-29 180.3 17.2 197 80-281 12-213 (276)
55 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-24 1.4E-28 198.8 21.6 207 74-281 404-622 (680)
56 4ecn_A Leucine-rich repeat pro 99.9 3.7E-25 1.3E-29 209.1 13.8 203 73-281 489-710 (876)
57 3oja_A Leucine-rich immune mol 99.9 3.6E-25 1.2E-29 198.2 13.0 199 76-281 35-250 (487)
58 2z63_A TOLL-like receptor 4, v 99.9 9.3E-25 3.2E-29 199.0 15.3 203 75-281 325-531 (570)
59 3o53_A Protein LRIM1, AGAP0063 99.9 4E-25 1.4E-29 187.5 11.5 193 74-281 57-250 (317)
60 3j0a_A TOLL-like receptor 5; m 99.9 3.3E-24 1.1E-28 204.0 18.2 207 73-280 71-374 (844)
61 1h6u_A Internalin H; cell adhe 99.9 7.8E-24 2.7E-28 178.8 17.0 190 75-281 41-230 (308)
62 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-24 1.5E-28 193.8 16.1 205 62-281 3-209 (549)
63 1p9a_G Platelet glycoprotein I 99.9 2.6E-23 8.9E-28 174.0 19.3 179 75-257 31-209 (290)
64 2z63_A TOLL-like receptor 4, v 99.9 5.9E-24 2E-28 193.7 16.6 160 75-234 28-192 (570)
65 3cvr_A Invasion plasmid antige 99.9 1E-23 3.5E-28 191.0 16.7 195 56-281 36-243 (571)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8E-24 2.7E-28 192.8 15.4 158 120-281 350-510 (562)
67 2xwt_C Thyrotropin receptor; s 99.9 6.7E-24 2.3E-28 172.7 13.3 185 90-281 25-218 (239)
68 4fmz_A Internalin; leucine ric 99.9 3.6E-23 1.2E-27 177.4 17.0 174 95-281 173-346 (347)
69 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.3E-27 172.5 18.9 198 72-281 107-324 (347)
70 2o6s_A Variable lymphocyte rec 99.9 7.2E-23 2.5E-27 163.0 14.1 181 62-264 6-186 (208)
71 1o6v_A Internalin A; bacterial 99.9 1.6E-22 5.5E-27 180.2 17.1 190 75-281 199-388 (466)
72 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-23 7E-28 176.9 9.6 193 75-281 34-227 (317)
73 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-21 4E-26 174.0 20.7 183 75-281 64-246 (457)
74 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4.1E-29 189.3 1.1 209 73-281 58-316 (386)
75 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-21 8.3E-26 172.0 20.6 185 74-281 41-225 (457)
76 4glp_A Monocyte differentiatio 99.9 7.6E-23 2.6E-27 172.8 9.6 202 75-281 64-285 (310)
77 3oja_A Leucine-rich immune mol 99.9 9.8E-23 3.4E-27 182.4 10.8 181 95-281 30-227 (487)
78 2o6s_A Variable lymphocyte rec 99.9 1.3E-21 4.3E-26 155.8 15.9 175 75-260 28-202 (208)
79 2ast_B S-phase kinase-associat 99.9 6.7E-24 2.3E-28 181.1 2.9 202 75-278 70-282 (336)
80 1o6v_A Internalin A; bacterial 99.9 1.7E-21 6E-26 173.5 18.4 191 74-281 176-366 (466)
81 4g8a_A TOLL-like receptor 4; l 99.9 2.8E-22 9.7E-27 184.5 13.5 201 75-276 52-257 (635)
82 1h6u_A Internalin H; cell adhe 99.9 2E-21 7E-26 163.9 15.3 172 95-281 37-208 (308)
83 4g8a_A TOLL-like receptor 4; l 99.9 3.8E-21 1.3E-25 176.9 18.4 205 75-281 371-580 (635)
84 1h6t_A Internalin B; cell adhe 99.9 1.6E-21 5.6E-26 163.2 14.1 170 74-257 45-214 (291)
85 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.3E-28 182.9 0.9 207 75-281 32-287 (386)
86 2xot_A Amphoterin-induced prot 99.9 2.5E-21 8.5E-26 167.0 15.3 175 79-256 22-202 (361)
87 2v9t_B SLIT homolog 2 protein 99.9 5.2E-21 1.8E-25 153.7 15.4 153 102-257 14-166 (220)
88 2ast_B S-phase kinase-associat 99.9 9.8E-24 3.3E-28 180.0 -1.1 212 61-279 35-258 (336)
89 3e6j_A Variable lymphocyte rec 99.9 1.6E-20 5.6E-25 151.7 17.5 156 101-260 21-176 (229)
90 3goz_A Leucine-rich repeat-con 99.9 6.2E-23 2.1E-27 177.1 2.7 205 75-279 22-264 (362)
91 3e6j_A Variable lymphocyte rec 99.9 2.1E-20 7.3E-25 151.0 17.4 166 53-234 9-174 (229)
92 2v9t_B SLIT homolog 2 protein 99.9 2.6E-20 8.9E-25 149.6 16.6 151 79-232 15-165 (220)
93 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-20 1E-24 149.2 16.2 153 79-234 15-168 (220)
94 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-20 5E-25 151.0 14.4 156 102-260 14-170 (220)
95 4ay9_X Follicle-stimulating ho 99.8 1E-20 3.5E-25 162.5 14.2 209 63-277 9-232 (350)
96 1h6t_A Internalin B; cell adhe 99.8 2.3E-20 7.9E-25 156.2 15.8 171 95-280 42-212 (291)
97 3goz_A Leucine-rich repeat-con 99.8 4.1E-23 1.4E-27 178.2 -1.1 206 76-281 52-297 (362)
98 4ezg_A Putative uncharacterize 99.8 8.1E-21 2.8E-25 149.9 12.0 150 122-280 43-193 (197)
99 4ay9_X Follicle-stimulating ho 99.8 5.7E-21 1.9E-25 164.1 11.4 198 79-281 13-215 (350)
100 2xot_A Amphoterin-induced prot 99.8 1.7E-20 6E-25 161.7 14.4 174 102-280 21-201 (361)
101 3g06_A SSPH2 (leucine-rich rep 99.8 8.2E-20 2.8E-24 167.3 19.5 183 75-281 81-297 (622)
102 1m9s_A Internalin B; cell inva 99.8 2E-20 6.7E-25 171.1 14.9 170 74-257 42-211 (605)
103 4ezg_A Putative uncharacterize 99.8 7.6E-21 2.6E-25 150.1 9.9 153 96-256 41-194 (197)
104 3g06_A SSPH2 (leucine-rich rep 99.8 3.1E-20 1.1E-24 170.1 15.1 179 75-280 61-273 (622)
105 1m9s_A Internalin B; cell inva 99.8 4.5E-20 1.5E-24 168.7 14.5 170 96-280 40-209 (605)
106 4b8c_D Glucose-repressible alc 99.8 6.5E-22 2.2E-26 184.8 2.2 223 30-260 129-358 (727)
107 1jl5_A Outer protein YOPM; leu 99.8 5.6E-19 1.9E-23 156.6 20.2 160 99-281 131-290 (454)
108 1jl5_A Outer protein YOPM; leu 99.8 5.9E-19 2E-23 156.5 20.2 140 75-232 131-270 (454)
109 1z7x_W Ribonuclease inhibitor; 99.8 2.7E-22 9.3E-27 178.2 -3.0 181 100-281 200-411 (461)
110 3cvr_A Invasion plasmid antige 99.8 2.6E-19 8.8E-24 162.3 16.3 165 75-264 80-251 (571)
111 1xeu_A Internalin C; cellular 99.8 2.4E-20 8.1E-25 153.9 8.3 169 75-258 19-187 (263)
112 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-21 3.9E-26 174.1 -3.8 208 74-281 112-383 (461)
113 1xeu_A Internalin C; cellular 99.8 5.6E-19 1.9E-23 145.6 12.5 148 74-234 40-187 (263)
114 1dce_A Protein (RAB geranylger 99.8 1.3E-21 4.4E-26 177.8 -6.7 123 148-275 442-567 (567)
115 1w8a_A SLIT protein; signaling 99.8 8E-18 2.7E-22 132.1 14.3 132 102-236 11-143 (192)
116 2ell_A Acidic leucine-rich nuc 99.8 3.2E-18 1.1E-22 131.4 11.0 137 122-261 23-164 (168)
117 1w8a_A SLIT protein; signaling 99.8 2.9E-18 1E-22 134.6 10.9 132 78-212 11-143 (192)
118 4b8c_D Glucose-repressible alc 99.8 1.6E-19 5.6E-24 168.7 2.7 154 90-253 215-369 (727)
119 2ell_A Acidic leucine-rich nuc 99.7 5.1E-18 1.7E-22 130.3 10.4 134 145-281 22-160 (168)
120 2wfh_A SLIT homolog 2 protein 99.7 3.3E-17 1.1E-21 128.7 13.4 128 126-257 13-140 (193)
121 2je0_A Acidic leucine-rich nuc 99.7 8.4E-18 2.9E-22 126.5 8.8 129 147-277 17-149 (149)
122 1dce_A Protein (RAB geranylger 99.7 4E-21 1.4E-25 174.5 -11.4 178 96-281 346-546 (567)
123 2je0_A Acidic leucine-rich nuc 99.7 1E-17 3.6E-22 125.9 8.5 128 123-252 17-149 (149)
124 2o6r_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 123.6 14.6 134 124-260 8-141 (177)
125 2wfh_A SLIT homolog 2 protein 99.7 1.5E-16 5E-21 125.0 14.2 127 102-232 13-139 (193)
126 2o6r_A Variable lymphocyte rec 99.7 2.1E-16 7.1E-21 122.3 14.4 133 101-236 9-141 (177)
127 1a9n_A U2A', U2A'; complex (nu 99.7 1.1E-16 3.9E-21 123.7 8.6 133 118-256 14-153 (176)
128 3ogk_B Coronatine-insensitive 99.7 9E-19 3.1E-23 160.2 -5.6 206 76-281 294-526 (592)
129 3ogk_B Coronatine-insensitive 99.6 2.4E-17 8.3E-22 150.7 2.4 34 242-275 377-410 (592)
130 3sb4_A Hypothetical leucine ri 99.6 1.5E-15 5.2E-20 129.0 13.2 197 75-275 49-328 (329)
131 1a9n_A U2A', U2A'; complex (nu 99.6 2.7E-16 9.2E-21 121.6 7.7 133 95-232 15-153 (176)
132 1ds9_A Outer arm dynein; leuci 99.6 6.9E-19 2.3E-23 138.9 -8.0 135 95-234 14-155 (198)
133 1ds9_A Outer arm dynein; leuci 99.6 1.6E-18 5.6E-23 136.8 -8.5 155 119-280 14-184 (198)
134 3g39_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 111.9 11.5 108 148-258 10-117 (170)
135 3sb4_A Hypothetical leucine ri 99.6 8.5E-15 2.9E-19 124.4 11.2 202 75-281 25-310 (329)
136 2r9u_A Variable lymphocyte rec 99.6 2.4E-14 8.1E-19 110.4 11.7 106 149-257 14-119 (174)
137 2p1m_B Transport inhibitor res 99.6 2.4E-17 8.2E-22 150.7 -7.4 205 75-281 289-519 (594)
138 3g39_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 106.4 12.7 105 101-208 11-115 (170)
139 2r9u_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 106.2 12.9 106 125-233 14-119 (174)
140 2p1m_B Transport inhibitor res 99.5 5.2E-16 1.8E-20 141.9 -2.7 201 75-276 105-346 (594)
141 4fdw_A Leucine rich hypothetic 99.5 3.5E-12 1.2E-16 111.1 17.7 193 77-279 159-356 (401)
142 3un9_A NLR family member X1; l 99.4 1.2E-15 4E-20 131.7 -5.0 165 99-263 72-259 (372)
143 3un9_A NLR family member X1; l 99.4 1.5E-15 5.2E-20 131.1 -5.0 160 122-281 71-252 (372)
144 2ifg_A High affinity nerve gro 99.4 1E-12 3.5E-17 112.2 10.8 105 150-257 11-117 (347)
145 4fdw_A Leucine rich hypothetic 99.4 1.3E-11 4.5E-16 107.4 17.4 193 76-278 136-333 (401)
146 2ifg_A High affinity nerve gro 99.3 1.5E-12 5.3E-17 111.2 8.3 104 126-232 11-116 (347)
147 2ra8_A Uncharacterized protein 99.3 2.8E-12 9.5E-17 110.0 4.9 200 75-279 107-341 (362)
148 2ra8_A Uncharacterized protein 99.2 1.8E-11 6E-16 105.0 5.7 180 99-281 107-320 (362)
149 1io0_A Tropomodulin; LRR prote 98.8 1.1E-09 3.9E-14 84.9 0.8 115 142-256 31-164 (185)
150 4fs7_A Uncharacterized protein 98.7 5.1E-07 1.7E-11 78.2 14.9 194 75-278 162-376 (394)
151 3rw6_A Nuclear RNA export fact 98.7 3E-11 1E-15 98.7 -11.3 22 61-82 76-97 (267)
152 1io0_A Tropomodulin; LRR prote 98.6 2.6E-09 8.9E-14 82.8 -0.3 113 167-279 32-162 (185)
153 4gt6_A Cell surface protein; l 98.6 2.1E-06 7.1E-11 74.4 17.2 86 190-279 283-368 (394)
154 3rw6_A Nuclear RNA export fact 98.6 7.1E-08 2.4E-12 78.7 5.6 81 192-274 167-257 (267)
155 4fs7_A Uncharacterized protein 98.5 3.8E-06 1.3E-10 72.7 15.6 178 92-278 155-353 (394)
156 4gt6_A Cell surface protein; l 98.4 9.7E-06 3.3E-10 70.1 16.5 84 191-278 261-344 (394)
157 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.1E-12 70.8 3.9 109 163-271 53-170 (176)
158 4h09_A Hypothetical leucine ri 98.3 5.5E-05 1.9E-09 64.9 16.9 128 144-276 214-341 (379)
159 3e4g_A ATP synthase subunit S, 98.2 5.1E-07 1.7E-11 68.7 2.4 83 147-229 61-149 (176)
160 4h09_A Hypothetical leucine ri 98.2 4.9E-05 1.7E-09 65.2 15.2 146 118-269 212-357 (379)
161 3rfe_A Platelet glycoprotein I 97.6 9.6E-05 3.3E-09 53.4 5.5 56 199-256 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 2.2E-05 7.6E-10 60.7 1.4 112 144-255 38-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 2.4E-05 8.1E-10 60.6 -0.1 17 144-160 67-83 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0027 9.3E-08 45.6 6.2 55 79-135 12-67 (130)
165 2lz0_A Uncharacterized protein 61.0 17 0.00058 24.1 5.0 36 118-154 15-50 (100)
166 2lz0_A Uncharacterized protein 44.5 65 0.0022 21.2 6.5 48 86-134 7-54 (100)
167 3ox7_P MH027; urokinase-type p 20.4 35 0.0012 15.2 0.7 10 60-69 5-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-39 Score=273.30 Aligned_cols=248 Identities=30% Similarity=0.513 Sum_probs=197.4
Q ss_pred CCCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEEcCCCCcee--ecCccccCCCCCC
Q 036746 29 SGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQ--WYGVTCSPRY--QRVTILDLQNLKLVG--TLSPHIGNLSFLQ 102 (281)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L~ 102 (281)
.|.++|.++|++||+.+. ++. .+.+|..+.++|. |.|+.|.... ++++.|+++++.+.+ .+|..+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 477889999999999996 444 6889988888998 9999998654 799999999999998 8999999999999
Q ss_pred EEeCCC-CCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc
Q 036746 103 KLDLRN-NSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN 181 (281)
Q Consensus 103 ~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (281)
+|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 8898889999999999999999999999888998999999999999999998888888888899999999988
Q ss_pred ccccCCCcccCCCC-CCCEEEcccCcCcccCCccCCC-----------------------CCCCCEEEcccCccccccCh
Q 036746 182 NLIGNIPSSLGNLS-SLRGLSLSRNGFYGSIPDTFGG-----------------------LKNLVNLSLVVNNLSGTIPP 237 (281)
Q Consensus 182 ~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~-----------------------l~~L~~L~l~~n~l~~~~p~ 237 (281)
.+.+.+|..+..++ +|++|++++|.+++.+|..+.. +++|+.|++++|.+++.+|.
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 88878888887776 7788888777776555555544 44445555555544433332
Q ss_pred hccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 238 SIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 238 ~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+..+++|++|++++|.+++.+|..+. .+++|++|++++|++
T Consensus 240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 240 -VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNL 280 (313)
T ss_dssp -CCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEE
T ss_pred -ccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcc
Confidence 44556666666666666666666554 566777777777665
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.4e-36 Score=275.73 Aligned_cols=246 Identities=21% Similarity=0.334 Sum_probs=215.4
Q ss_pred CCHhHHHHHHHHHhhcccCCCCCCC-------CCCCCCCCCcc---cceEecCCCCcEEEEEcCCCCceeecCccccCCC
Q 036746 30 GNETDRAALLEFKSKITNDALGVLG-------SWNDSIHFCQW---YGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLS 99 (281)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~ 99 (281)
....|+.||.++++++.+..|.... +|..+.++|.| .||.|+.. ++|+.|+++++++.|.+|+.+++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 3347899999999999877666444 89988999999 99999866 8999999999999999999999999
Q ss_pred CCCEEeCCCCCC--------------------------------------------------------------------
Q 036746 100 FLQKLDLRNNSF-------------------------------------------------------------------- 111 (281)
Q Consensus 100 ~L~~L~l~~n~l-------------------------------------------------------------------- 111 (281)
+|++|++++|.+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 999999998843
Q ss_pred ----------ccCCchhccCCCCCCEEEccCccCccc-----------------CCCCCC--CCCCCcEEEccCCCCCCC
Q 036746 112 ----------TNAIPPQIGHLRRLQILYLQINSFDGE-----------------IPASTS--NCSNLLVVSLALNHLVGK 162 (281)
Q Consensus 112 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~ 162 (281)
++ +|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 33 778899999999999999999975 999999 999999999999999999
Q ss_pred CCcccCCCCCCcEEeccccc-ccc-CCCcccCCC------CCCCEEEcccCcCcccCCc--cCCCCCCCCEEEcccCccc
Q 036746 163 IPSEFGSLSKLQFLSTTANN-LIG-NIPSSLGNL------SSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 163 ~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~ 232 (281)
+|..++++++|++|++++|. +.+ .+|..++.+ ++|++|++++|.++ .+|. .++++++|+.|++++|.++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 99999999999999999998 887 778777665 88999999999998 8887 8888999999999999998
Q ss_pred cccChhccCCCCCcEEEcccCcccccCChhhhhCCCC-CCEEeccCccCC
Q 036746 233 GTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN-LRIFSITGNQFT 281 (281)
Q Consensus 233 ~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~-L~~L~l~~N~lt 281 (281)
|.+| .+..+++|+.|++++|.++ .+|..+. .+++ |+.|++++|+++
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS
T ss_pred cchh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc
Confidence 8888 7788888888888888888 7777765 6777 888888888764
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=9.3e-36 Score=254.05 Aligned_cols=250 Identities=18% Similarity=0.249 Sum_probs=196.4
Q ss_pred cccCCCCHhHHHHHHHHHhhcccCCCCCCCCC----CCCCCCCcccceEec--------CCCCcEEEEEcCCCCceeecC
Q 036746 25 AFSVSGNETDRAALLEFKSKITNDALGVLGSW----NDSIHFCQWYGVTCS--------PRYQRVTILDLQNLKLVGTLS 92 (281)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~~~--------~~~~~l~~L~l~~~~l~~~~~ 92 (281)
+++.....+++.+|++||..+..++......| ....+.|.|.|+.|. ....+++.|+++++.+. .+|
T Consensus 19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred eeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 34444566888999999998866776667788 456788999999884 23478889999998886 777
Q ss_pred ccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCC---
Q 036746 93 PHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGS--- 169 (281)
Q Consensus 93 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~--- 169 (281)
..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 77888888999999988888 78888888888888888888888 77888888888888888887777777776654
Q ss_pred ------CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCC
Q 036746 170 ------LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS 243 (281)
Q Consensus 170 ------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 243 (281)
+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 788888888888777 67777777788888888888877 4566677777888888888777777777777777
Q ss_pred CCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 244 SIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 244 ~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+|+.|++++|.+.+.+|..+. .+++|+.|++++|++
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTT
T ss_pred CCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCc
Confidence 888888888777777777665 677888888887765
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.6e-34 Score=270.78 Aligned_cols=247 Identities=26% Similarity=0.388 Sum_probs=165.8
Q ss_pred cCCCCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCceee---cC-----------
Q 036746 27 SVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGT---LS----------- 92 (281)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~---~~----------- 92 (281)
+++..++|++||++||+.+. ++. .+.+|..++++|.|.||.|+ .++|+.|+++++.+.|. +|
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 33456789999999999997 665 89999988899999999998 48999999999998876 44
Q ss_pred ------------ccccCCCCCCEEeCCCCCCccCCch--hccCCCCCCEEEccCccCcccCCCCC-CCCCCCcEEEccCC
Q 036746 93 ------------PHIGNLSFLQKLDLRNNSFTNAIPP--QIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALN 157 (281)
Q Consensus 93 ------------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n 157 (281)
..++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4667778888888888888877777 78888888888888888877766655 67777777777777
Q ss_pred CCCCCCCcc---cCCCCCCcEEecccccc----------------------ccCCCcccCCCCCCCEEEcccCcCcccCC
Q 036746 158 HLVGKIPSE---FGSLSKLQFLSTTANNL----------------------IGNIPSSLGNLSSLRGLSLSRNGFYGSIP 212 (281)
Q Consensus 158 ~~~~~~~~~---l~~l~~L~~L~l~~n~~----------------------~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 212 (281)
.+.+..|.. +..+++|++|++++|.+ .+..|. +..+++|++|++++|.+++.+|
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 776555444 44444444444444444 333333 4444455555555555544444
Q ss_pred ccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 213 DTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
..+.++++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+...+++|++|++++|++
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred HHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 44555555555555555554444332 4555555555555555566665553346677777766654
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-33 Score=265.97 Aligned_cols=245 Identities=20% Similarity=0.245 Sum_probs=206.5
Q ss_pred CCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCC--Ccc------------cceEecCCCCcEEEEEcCCCCceeecCccc
Q 036746 30 GNETDRAALLEFKSKITNDALGVLGSWNDSIHF--CQW------------YGVTCSPRYQRVTILDLQNLKLVGTLSPHI 95 (281)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~--c~~------------~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~ 95 (281)
...+|+.+|++||+++.+..|....+|.. .++ |.| .|+.|... ++|+.|+++++++.|.+|+.+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~-~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l 343 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGKNWRYYSGTIN-NTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAI 343 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCCSSCS-SCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGG
T ss_pred cchHHHHHHHHHHHHcCCCCCCcCCCccc-ccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHH
Confidence 44578999999999996432222222211 244 999 99999863 899999999999999999999
Q ss_pred cCCCCCCEEeC-CCCCCccC------------------------------------------------------------
Q 036746 96 GNLSFLQKLDL-RNNSFTNA------------------------------------------------------------ 114 (281)
Q Consensus 96 ~~l~~L~~L~l-~~n~l~~~------------------------------------------------------------ 114 (281)
+++++|++|+| ++|.+.|.
T Consensus 344 ~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l 423 (876)
T 4ecn_A 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423 (876)
T ss_dssp GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCC
T ss_pred hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccccc
Confidence 99999999999 76654332
Q ss_pred ----------------CchhccCCCCCCEEEccCccCcc-----------------cCCCCCC--CCCCCcEEEccCCCC
Q 036746 115 ----------------IPPQIGHLRRLQILYLQINSFDG-----------------EIPASTS--NCSNLLVVSLALNHL 159 (281)
Q Consensus 115 ----------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~ 159 (281)
+|..|.++++|++|++++|.+++ .+|..++ ++++|++|++++|.+
T Consensus 424 ~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l 503 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503 (876)
T ss_dssp CCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred chhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence 77889999999999999999997 3999988 999999999999999
Q ss_pred CCCCCcccCCCCCCcEEeccccc-ccc-CCCcccCC-------CCCCCEEEcccCcCcccCCc--cCCCCCCCCEEEccc
Q 036746 160 VGKIPSEFGSLSKLQFLSTTANN-LIG-NIPSSLGN-------LSSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVV 228 (281)
Q Consensus 160 ~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~-------l~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~ 228 (281)
.+.+|..++.+++|+.|++++|. +.+ .+|..+.. +++|++|++++|.++ .+|. .++++++|+.|++++
T Consensus 504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVH 582 (876)
T ss_dssp CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTT
T ss_pred CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCC
Confidence 99999999999999999999998 877 67765544 448999999999998 8888 888999999999999
Q ss_pred CccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCC-CCEEeccCccCC
Q 036746 229 NNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN-LRIFSITGNQFT 281 (281)
Q Consensus 229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~-L~~L~l~~N~lt 281 (281)
|.++ .+| .+..+++|+.|++++|.++ .+|..+. .+++ |+.|++++|+++
T Consensus 583 N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 583 NKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC
T ss_pred CCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC
Confidence 9998 777 7888899999999999988 7887776 6777 999999988874
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.3e-31 Score=225.53 Aligned_cols=202 Identities=25% Similarity=0.438 Sum_probs=142.6
Q ss_pred CcEEEEEcCC-CCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 75 QRVTILDLQN-LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
++++.|++++ +.+.+.+|..++++++|++|++++|.+.+.+|..|..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 4566666663 555555565566666666666666655555555555555566666655555555555555555555555
Q ss_pred ccCCCCCCCCCcccCCCC-CCc-----------------------EEeccccccccCCCcccCCCCCCCEEEcccCcCcc
Q 036746 154 LALNHLVGKIPSEFGSLS-KLQ-----------------------FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~-~L~-----------------------~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
+++|.+.+.+|..+..++ +|+ +|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 555555545555554444 444 44555555544555666777888888888888876
Q ss_pred cCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|.. ..+++|+.+++++|+
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 6654 788999999999999999999999999999999999999999999876 478999999999997
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.4e-30 Score=245.39 Aligned_cols=206 Identities=28% Similarity=0.445 Sum_probs=144.5
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 44555555555555555555556666666666666666556666666666666666666666666666666666666666
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCccc-------------------------------------------
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL------------------------------------------- 191 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l------------------------------------------- 191 (281)
++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 6666666666666666777777777666665555332
Q ss_pred ---------------------------CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCC
Q 036746 192 ---------------------------GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISS 244 (281)
Q Consensus 192 ---------------------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 244 (281)
..+++|++|++++|.++|.+|..+++++.|+.|++++|.+++.+|..++++++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 22356777788888887788888888888888888888888888888888888
Q ss_pred CcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 245 IQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 245 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
|+.||+++|+++|.+|..+. .+++|++|++++|+++
T Consensus 682 L~~LdLs~N~l~g~ip~~l~-~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMS-ALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCEEECCSSCCEECCCGGGG-GCCCCSEEECCSSEEE
T ss_pred CCEEECCCCcccCcCChHHh-CCCCCCEEECcCCccc
Confidence 88888888888888887776 6888888888888763
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.7e-29 Score=211.21 Aligned_cols=206 Identities=20% Similarity=0.202 Sum_probs=187.8
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCcc-CcccCCCCCCCCCCCcEEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS-FDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 153 (281)
++++.|+++++.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 689999999999998777889999999999999999998778899999999999999997 7755578899999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 99999998778889999999999999999986666778999999999999999996666779999999999999999998
Q ss_pred ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..|..+..+++|+.|++++|.++ .++...+..+++|+.|++++|+++
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCcc
Confidence 88999999999999999999999 466665568999999999999863
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.97 E-value=2.2e-29 Score=208.93 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=188.2
Q ss_pred CCCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccC
Q 036746 60 IHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI 139 (281)
Q Consensus 60 ~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 139 (281)
.+.|.|.|+.|... ...+.++++++++. .+|..+. +.+++|++++|.+.+..+..|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36899999988643 45678999999987 4666554 68999999999999766678999999999999999999444
Q ss_pred CCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCC
Q 036746 140 PASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK 219 (281)
Q Consensus 140 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 219 (281)
+..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 45568899999999999999976667789999999999999999877777889999999999999999966667789999
Q ss_pred CCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 220 NLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 220 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+|++|++++|.+++..+..+..+++|++|++++|+++ .+|...+..+++|+.|++++|+++
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 9999999999999766667889999999999999999 567666668999999999999874
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.4e-28 Score=218.64 Aligned_cols=203 Identities=22% Similarity=0.229 Sum_probs=140.1
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56778888888887777777888888888888888887666677777888888888888877444455777777888888
Q ss_pred cCCCCCCCCCcccCC-------------------------CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcc
Q 036746 155 ALNHLVGKIPSEFGS-------------------------LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~-------------------------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
++|.+....+..+.. +++|++|++++|.+.+ +| .+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 777776443334444 4455555555555442 22 25555666666666666666
Q ss_pred cCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
..|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|...+..+++|+.|++++|++
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCc
Confidence 66666777777777777777777666666777777777777777777 45555555677777777777765
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.1e-29 Score=212.39 Aligned_cols=202 Identities=21% Similarity=0.298 Sum_probs=189.3
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCC--------
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSN-------- 145 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------- 145 (281)
.++++.|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 478999999999998 88999999999999999999999 78999999999999999999988899988765
Q ss_pred -CCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEE
Q 036746 146 -CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL 224 (281)
Q Consensus 146 -l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 224 (281)
+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 999999999999999 88999999999999999999998 467789999999999999999999999999999999999
Q ss_pred EcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 225 SLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 225 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++++|.+.+.+|..+..+++|++|++++|++.+.+|..+. .+++|+.+++..|.+
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGS
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHH
Confidence 9999999999999999999999999999999999999987 799999999988764
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.9e-29 Score=208.54 Aligned_cols=205 Identities=22% Similarity=0.259 Sum_probs=134.7
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCcc-------------------------CCchhccCCCCCCEEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTN-------------------------AIPPQIGHLRRLQILY 129 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~ 129 (281)
++++.|++++|.+....+..+.++++|++|++++|.+.. .+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 356666666666553333334555666666665555541 2333455566666666
Q ss_pred ccCccCcccCC-CCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccccc-CCCcccCCCCCCCEEEcccCcC
Q 036746 130 LQINSFDGEIP-ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGF 207 (281)
Q Consensus 130 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~ 207 (281)
+++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 66666653222 356667777777777777766666667777777777777777765 4566677777777777777777
Q ss_pred cccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCC-CCCCEEeccCccC
Q 036746 208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTL-PNLRIFSITGNQF 280 (281)
Q Consensus 208 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~-~~L~~L~l~~N~l 280 (281)
++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+. .+ ++|++|++++|++
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC-CCCTTCCEEECTTCCE
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH-hhhccCCEEEccCCCe
Confidence 766677777777777777777777765555677777788888888877766665555 45 4788888887775
No 13
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=8.5e-28 Score=199.91 Aligned_cols=205 Identities=20% Similarity=0.182 Sum_probs=181.0
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56999999999998877778999999999999999999777778999999999999999999777788999999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccC-CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCC----EEEcccC
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV----NLSLVVN 229 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~----~L~l~~n 229 (281)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999977666899999999999999999763 688999999999999999999977777777666666 8999999
Q ss_pred ccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 230 NLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 230 ~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+++.. .......+|+.|++++|.++ .+|..++..+++|+.|++++|+++
T Consensus 188 ~l~~~~-~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQ-PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEEC-TTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccC-ccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccc
Confidence 998554 44445568999999999999 677777668999999999999975
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=210.41 Aligned_cols=202 Identities=23% Similarity=0.258 Sum_probs=127.1
Q ss_pred cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc
Q 036746 76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA 155 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 155 (281)
+++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44455555555544444445555555555555555544444444455555555555555542222334444455555554
Q ss_pred CCCCCCCCC-------------------------cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCccc
Q 036746 156 LNHLVGKIP-------------------------SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS 210 (281)
Q Consensus 156 ~n~~~~~~~-------------------------~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 210 (281)
+|.+....+ ..+..+++|++|++++|.+. .+| .+..+++|++|++++|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence 444442222 24556666666666666665 344 366677788888888888776
Q ss_pred CCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|...+..+++|+.|++++|++
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence 7778888888888888888888777777888888888888888888 56666656788888888888875
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=9e-28 Score=202.65 Aligned_cols=185 Identities=21% Similarity=0.256 Sum_probs=166.1
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCc-hhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-PQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV 152 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (281)
.++++.|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 467888999998886 466678899999999999999986544 578899999999999999998888889999999999
Q ss_pred EccCCCCCC-CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcc
Q 036746 153 SLALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231 (281)
Q Consensus 153 ~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 231 (281)
++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 999999986 5788899999999999999999987788899999999999999999977777889999999999999999
Q ss_pred ccccChhccCCC-CCcEEEcccCcccccC
Q 036746 232 SGTIPPSIFNIS-SIQTFDVGSTYIEGEM 259 (281)
Q Consensus 232 ~~~~p~~l~~l~-~L~~L~l~~n~i~~~~ 259 (281)
++..|..+..++ +|+.|++++|++++..
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred cccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 988888888884 9999999999998643
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3e-27 Score=209.90 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=57.6
Q ss_pred cCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCc
Q 036746 167 FGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ 246 (281)
Q Consensus 167 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 246 (281)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 33444444444444444444444444455555555555555444444555555555555555555544455555555555
Q ss_pred EEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 247 ~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+|++++|+++ .+|...+..+++|++|++++|++
T Consensus 375 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 375 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCccc-cCCHhHhccCCcccEEEccCCCc
Confidence 5555555555 34443433555555555555554
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.9e-27 Score=209.99 Aligned_cols=207 Identities=21% Similarity=0.274 Sum_probs=172.4
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchh--ccCCCCCCEEEccCccCcccCCCC-CCCCCCCc
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ--IGHLRRLQILYLQINSFDGEIPAS-TSNCSNLL 150 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 150 (281)
.++++.|++++|.+.+..|..++++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|.. +.++++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 478899999999988888888888999999999999887644444 778888999999988888666665 77888888
Q ss_pred EEEccCCCCCCCCCcccCCC------------------------------------------------------------
Q 036746 151 VVSLALNHLVGKIPSEFGSL------------------------------------------------------------ 170 (281)
Q Consensus 151 ~L~l~~n~~~~~~~~~l~~l------------------------------------------------------------ 170 (281)
+|++++|.+.+..+..+..+
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 88888888776554433221
Q ss_pred -------------------------------------CCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCc
Q 036746 171 -------------------------------------SKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213 (281)
Q Consensus 171 -------------------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 213 (281)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 3566666666666666788899999999999999999988899
Q ss_pred cCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 214 TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 214 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+.++++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|+++
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLK 384 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCS
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccc
Confidence 999999999999999999987788999999999999999999976676665 7999999999999985
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=8e-27 Score=199.13 Aligned_cols=215 Identities=23% Similarity=0.301 Sum_probs=170.5
Q ss_pred CCcccceEecCC---------CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC
Q 036746 62 FCQWYGVTCSPR---------YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132 (281)
Q Consensus 62 ~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 132 (281)
.|.|..+.|... .++++.|++++|.+.+..|..+.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 366777766521 25799999999999887788899999999999999999987888999999999999999
Q ss_pred ccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccccc--CCCcccCCC----------------
Q 036746 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG--NIPSSLGNL---------------- 194 (281)
Q Consensus 133 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l---------------- 194 (281)
|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 9998 7777665 789999999998886656668888888888888887742 334433332
Q ss_pred ----CCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCC
Q 036746 195 ----SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL 270 (281)
Q Consensus 195 ----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L 270 (281)
++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+. .+++|
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L 266 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLL 266 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTC
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccC
Confidence 35667777777777666677788888888888888888666667888888888888888888 7777765 68888
Q ss_pred CEEeccCccCC
Q 036746 271 RIFSITGNQFT 281 (281)
Q Consensus 271 ~~L~l~~N~lt 281 (281)
+.|++++|+++
T Consensus 267 ~~L~l~~N~l~ 277 (332)
T 2ft3_A 267 QVVYLHTNNIT 277 (332)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 88888888774
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.7e-28 Score=207.95 Aligned_cols=204 Identities=19% Similarity=0.199 Sum_probs=119.9
Q ss_pred cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC-CCCCCCCCcEEEc
Q 036746 76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA-STSNCSNLLVVSL 154 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l 154 (281)
+++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.++ .+|. .+.++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEEC
Confidence 4555555555555444445555555555555555555444455555555555555555555 2332 2455555555555
Q ss_pred cCCCCCCCCC-cccCCCCCCcEEeccccc-cccCCCcccCCCCCCCEEEcccCcCcccCCccCCC---------------
Q 036746 155 ALNHLVGKIP-SEFGSLSKLQFLSTTANN-LIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGG--------------- 217 (281)
Q Consensus 155 ~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~--------------- 217 (281)
++|.+....+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..|..+..
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 5555552222 245555555555555552 33333344555555555555555555444544444
Q ss_pred ---------CCCCCEEEcccCccccc-------------------------------cChhccCCCCCcEEEcccCcccc
Q 036746 218 ---------LKNLVNLSLVVNNLSGT-------------------------------IPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 218 ---------l~~L~~L~l~~n~l~~~-------------------------------~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
+++|+.|++++|.+++. +|..+..+++|+.|++++|+++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 45555555555555532 2345667888999999999988
Q ss_pred cCChhhhhCCCCCCEEeccCccCC
Q 036746 258 EMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 258 ~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+|..++..+++|++|++++|+++
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 788887668899999999999874
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=206.93 Aligned_cols=182 Identities=23% Similarity=0.256 Sum_probs=146.3
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-------------
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP------------- 140 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------- 140 (281)
.++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 3667777777777776666667777777777777777765444556667777777777666553222
Q ss_pred ------------CCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc
Q 036746 141 ------------ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 141 ------------~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (281)
..|.++++|++|++++|.+. .+| .+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 24666778888888888887 445 5788999999999999999888899999999999999999999
Q ss_pred ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc
Q 036746 209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
+..+..+.++++|+.|++++|++++..+..+..+++|+.|++++|++..
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 8889999999999999999999997777778899999999999999873
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.5e-27 Score=207.05 Aligned_cols=183 Identities=21% Similarity=0.232 Sum_probs=152.8
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC-----------
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA----------- 141 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 141 (281)
..++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+.
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 347788888888888877777888888888888888888866666677888888888888877633222
Q ss_pred --------------CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcC
Q 036746 142 --------------STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGF 207 (281)
Q Consensus 142 --------------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 207 (281)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 35566777777777777773 33 578899999999999999988889999999999999999999
Q ss_pred cccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc
Q 036746 208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 208 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
.+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++..
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 98889999999999999999999997666778899999999999999874
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.9e-26 Score=191.54 Aligned_cols=200 Identities=22% Similarity=0.211 Sum_probs=177.8
Q ss_pred EEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC
Q 036746 78 TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN 157 (281)
Q Consensus 78 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 157 (281)
+.++.+++++. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67788888875 455544 479999999999999777778999999999999999999777889999999999999999
Q ss_pred C-CCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC
Q 036746 158 H-LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236 (281)
Q Consensus 158 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (281)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776668889999999999999999997778889999999999999999997667779999999999999999996666
Q ss_pred hhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 237 PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 237 ~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..+..+++|++|++++|.+++..|..+. .+++|+.|++++|+++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCS
T ss_pred HHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCC
Confidence 6789999999999999999977677665 7999999999999875
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.9e-26 Score=196.54 Aligned_cols=215 Identities=24% Similarity=0.323 Sum_probs=157.2
Q ss_pred CCcccceEecC---------CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC
Q 036746 62 FCQWYGVTCSP---------RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132 (281)
Q Consensus 62 ~c~~~~~~~~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 132 (281)
.|.+..+.|.. -.+.++.|++++|.+.+..+..+.++++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45666666642 125788999999999877777899999999999999999977788899999999999999
Q ss_pred ccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccccc--CCCcccCCC----------------
Q 036746 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG--NIPSSLGNL---------------- 194 (281)
Q Consensus 133 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l---------------- 194 (281)
|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 9988 6666543 566666666666664444445555555555555555431 233333333
Q ss_pred -----CCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746 195 -----SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN 269 (281)
Q Consensus 195 -----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~ 269 (281)
++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+. .+++
T Consensus 187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~ 264 (330)
T 1xku_A 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKY 264 (330)
T ss_dssp CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSS
T ss_pred CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCC
Confidence 45666666666666556677778888888888888887666667778888888888888887 7777665 6788
Q ss_pred CCEEeccCccCC
Q 036746 270 LRIFSITGNQFT 281 (281)
Q Consensus 270 L~~L~l~~N~lt 281 (281)
|++|++++|+++
T Consensus 265 L~~L~l~~N~i~ 276 (330)
T 1xku_A 265 IQVVYLHNNNIS 276 (330)
T ss_dssp CCEEECCSSCCC
T ss_pred cCEEECCCCcCC
Confidence 888888888774
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=3.6e-26 Score=191.45 Aligned_cols=200 Identities=20% Similarity=0.176 Sum_probs=173.6
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
.++++.++++++++. .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++ ++.. ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEE
Confidence 367889999999986 5666554 789999999999987778889999999999999999984 3433 7889999999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 9999998 778888999999999999999987666789999999999999999997667778899999999999999986
Q ss_pred ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..+..+..+++|+.|++++|+++ .+|..++ .+++|+.|++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCcc
Confidence 55556778999999999999999 8898888 6789999999999874
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=205.88 Aligned_cols=206 Identities=19% Similarity=0.164 Sum_probs=118.3
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
.++++.|++++|.+.+..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 35666666666666666566666666666666666666644444556666666666666666655566666666666666
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 66666665555566666666666666666654333445566666666666666654444455555555555555444333
Q ss_pred ccCh------------------------hccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 234 TIPP------------------------SIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 234 ~~p~------------------------~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+|. .+..+++|+.|++++|.+++ ++...+..+++|+.|++++|++
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCC
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCCcc
Confidence 3333 34444555555555555542 2222223455555555555544
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=204.43 Aligned_cols=186 Identities=19% Similarity=0.236 Sum_probs=151.7
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC--CCCCCCCCc
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA--STSNCSNLL 150 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~ 150 (281)
..++++.|++++|.+.+..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|.++ .+|. .+..+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence 4578999999999999888888999999999999999999655556899999999999999998 5665 788999999
Q ss_pred EEEccCC-CCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccC------------------------
Q 036746 151 VVSLALN-HLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRN------------------------ 205 (281)
Q Consensus 151 ~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n------------------------ 205 (281)
+|++++| .+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 9999998 466555678889999999999999888777777777665555555554
Q ss_pred cCccc-------------------------------CCccCCCCCCCCEEEcccCccccccChh-ccCCCCCcEEEcccC
Q 036746 206 GFYGS-------------------------------IPDTFGGLKNLVNLSLVVNNLSGTIPPS-IFNISSIQTFDVGST 253 (281)
Q Consensus 206 ~~~~~-------------------------------~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n 253 (281)
.+++. +|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 44331 2233567889999999999999 56665 589999999999999
Q ss_pred cccccCC
Q 036746 254 YIEGEMP 260 (281)
Q Consensus 254 ~i~~~~p 260 (281)
++.+..|
T Consensus 312 ~~~~~~~ 318 (353)
T 2z80_A 312 PWDCSCP 318 (353)
T ss_dssp CBCCCHH
T ss_pred CccCcCC
Confidence 9997654
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=206.42 Aligned_cols=207 Identities=19% Similarity=0.222 Sum_probs=177.7
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999888889999999999999999999888899999999999999999999544456899999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999988888999999999999999999888888899999999999999999966667789999999999999999977
Q ss_pred cChhccCCCCCcEEEcccCcccc-----------------------cCChhhhhCCCCCCEEeccCccCC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEG-----------------------EMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~-----------------------~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+..+..+++|+.|++++|...+ .+|...+..+++|+.|++++|+++
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 77677777766666666544333 444444456777777777777654
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-26 Score=211.50 Aligned_cols=203 Identities=20% Similarity=0.188 Sum_probs=123.3
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..|..++.+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 45667777777777666667777777777777777777666666677777777777777777333333577777777777
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCc---------------------------------------------
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS--------------------------------------------- 189 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--------------------------------------------- 189 (281)
++|.+.+..|..+..+++|++|++++|.+.+....
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 77777766666677777777777777766532111
Q ss_pred --------------ccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746 190 --------------SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI 255 (281)
Q Consensus 190 --------------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i 255 (281)
.+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+++ +|..+..+++|+.|++++|.+
T Consensus 235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence 12233444455555555554445555555555555555555542 344444455555555555555
Q ss_pred cccCChhhhhCCCCCCEEeccCccC
Q 036746 256 EGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 256 ~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+ .+|..+. .+++|+.|++++|++
T Consensus 314 ~-~i~~~~~-~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 314 L-HVERNQP-QFDRLENLYLDHNSI 336 (597)
T ss_dssp C-CCGGGHH-HHTTCSEEECCSSCC
T ss_pred C-ccCcccc-cCCCCCEEECCCCCC
Confidence 5 4554443 455555555555554
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4.3e-26 Score=198.74 Aligned_cols=202 Identities=20% Similarity=0.216 Sum_probs=126.9
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCC-CCCCCCCcEEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS-TSNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~ 153 (281)
++++.|+++++.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.++ .+|.. +.++++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 56777777777776666666777777777777777777666666777777777777777777 44443 46777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCC---------------------------------------------
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP--------------------------------------------- 188 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--------------------------------------------- 188 (281)
+++|.+.+..+..+..+++|++|++++|.+.+...
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 77777775556666777777777777666543211
Q ss_pred --------------cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746 189 --------------SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254 (281)
Q Consensus 189 --------------~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 254 (281)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+
T Consensus 228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSC
T ss_pred ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCc
Confidence 11233445555666666665555556666666666666666665 234444555666666666666
Q ss_pred ccccCChhhhhCCCCCCEEeccCccC
Q 036746 255 IEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 255 i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++ .+|..+. .+++|+.|++++|++
T Consensus 307 l~-~~~~~~~-~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 307 LL-HVERNQP-QFDRLENLYLDHNSI 330 (390)
T ss_dssp CC-CCGGGHH-HHTTCSEEECCSSCC
T ss_pred ce-ecCcccc-ccCcCCEEECCCCcc
Confidence 65 4555443 455666666666554
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4.3e-26 Score=198.73 Aligned_cols=135 Identities=21% Similarity=0.206 Sum_probs=119.0
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 67889999999987555555789999999999999999777778999999999999999999777778999999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 9999994444457899999999999999987777889999999999999998864
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=6e-26 Score=193.50 Aligned_cols=203 Identities=19% Similarity=0.196 Sum_probs=159.1
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCch----------------------hccCCCCCCEEEc
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPP----------------------QIGHLRRLQILYL 130 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l 130 (281)
..++++.|++++|.+.+..|..++.+++|++|++++|.+. .+|. .+.++++|++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 3477888899888888777888888888888888888766 3332 3455666666666
Q ss_pred cCccCcc--cCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc
Q 036746 131 QINSFDG--EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 131 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (281)
++|.+.. ..+..+.++++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 6666542 44555666777777777777776 3454443 77888888888888777888999999999999999999
Q ss_pred ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhh------CCCCCCEEeccCccCC
Q 036746 209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGT------TLPNLRIFSITGNQFT 281 (281)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~------~~~~L~~L~l~~N~lt 281 (281)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .++...+. ..+.++.|++++|+++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCccc
Confidence 877888999999999999999998 78889999999999999999999 45544432 2478999999999873
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.6e-26 Score=207.96 Aligned_cols=205 Identities=19% Similarity=0.217 Sum_probs=162.2
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 56778888888876555555778888999999988888777778888888999999988888766677888889999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccC-----------------------
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI----------------------- 211 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~----------------------- 211 (281)
++|.+....+..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+++..
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 988888554455688888999999888888777777888888888888888776321
Q ss_pred ------------------------------------CccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746 212 ------------------------------------PDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI 255 (281)
Q Consensus 212 ------------------------------------p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i 255 (281)
+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 11245567888888888888877788888888899999999888
Q ss_pred cccCChhhhhCCCCCCEEeccCccCC
Q 036746 256 EGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 256 ~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
++ +|..+. .+++|+.|++++|+++
T Consensus 291 ~~-l~~~~~-~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 291 VA-LNLYGQ-PIPTLKVLDLSHNHLL 314 (597)
T ss_dssp CE-EECSSS-CCTTCCEEECCSSCCC
T ss_pred CC-CCcccc-cCCCCcEEECCCCCCC
Confidence 84 555553 6888999999888874
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.2e-27 Score=200.96 Aligned_cols=201 Identities=21% Similarity=0.277 Sum_probs=172.1
Q ss_pred CCcEEEEEcCCCCceeecCccc--cCCCCCCEEeCCCCCCccCCchhccCC-----CCCCEEEccCccCcccCCCCCCCC
Q 036746 74 YQRVTILDLQNLKLVGTLSPHI--GNLSFLQKLDLRNNSFTNAIPPQIGHL-----RRLQILYLQINSFDGEIPASTSNC 146 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l 146 (281)
.++++.|++++|.+.+.+|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..|..+.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4789999999999998888876 8999999999999999976 7777766 899999999999997777899999
Q ss_pred CCCcEEEccCCCCCCC--CCccc--CCCCCCcEEecccccccc--CCC-cccCCCCCCCEEEcccCcCcccCC-ccCCCC
Q 036746 147 SNLLVVSLALNHLVGK--IPSEF--GSLSKLQFLSTTANNLIG--NIP-SSLGNLSSLRGLSLSRNGFYGSIP-DTFGGL 218 (281)
Q Consensus 147 ~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l 218 (281)
++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+++..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999998754 33444 889999999999999873 222 334577899999999999997765 456678
Q ss_pred CCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 219 KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 219 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
++|+.|++++|.++ .+|..+. ++|++|++++|++++ +|. + ..+++|++|++++|+++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~-~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-P-DELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-T-TTSCEEEEEECTTCTTT
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC-Chh-H-hhCCCCCEEeccCCCCC
Confidence 99999999999998 7787776 899999999999995 465 4 48999999999999985
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=7.1e-26 Score=207.99 Aligned_cols=204 Identities=23% Similarity=0.227 Sum_probs=121.3
Q ss_pred CcEEEEEcCCCCceeec--CccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCC-CCCCCCCcE
Q 036746 75 QRVTILDLQNLKLVGTL--SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS-TSNCSNLLV 151 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~ 151 (281)
++++.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 44555555555554433 444555555555555555555555555555566666666666555443332 555666666
Q ss_pred EEccCCCCCCCCCcccCCCCCCcEEeccccccccC---CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEccc
Q 036746 152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN---IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228 (281)
Q Consensus 152 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 228 (281)
|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 66666666655555566666666666666665541 223455666666666666666655666666666777777777
Q ss_pred CccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 229 NNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
|++++..|..+..+++| .|++++|++++..|..+ ..+++|+.|++++|++
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL-PILSQQRTINLRQNPL 559 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH-HHHHTSSEEECTTCCE
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhc-ccCCCCCEEeCCCCCc
Confidence 77666666666666666 67777777664333333 3566777777777765
No 35
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=1.8e-25 Score=183.33 Aligned_cols=192 Identities=22% Similarity=0.240 Sum_probs=167.5
Q ss_pred CCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC
Q 036746 61 HFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP 140 (281)
Q Consensus 61 ~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 140 (281)
.++.|.|..|. ...+.++++++++. .+|..+. +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 46678899996 34567899999886 5666555 689999999999998888889999999999999999997777
Q ss_pred CCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCC
Q 036746 141 ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN 220 (281)
Q Consensus 141 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 220 (281)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 78899999999999999999777778899999999999999998666666889999999999999999666678999999
Q ss_pred CCEEEcccCccccccChhccCCCCCcEEEcccCccccc
Q 036746 221 LVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGE 258 (281)
Q Consensus 221 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~ 258 (281)
|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999977677888999999999999999864
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4.7e-26 Score=209.22 Aligned_cols=206 Identities=22% Similarity=0.195 Sum_probs=174.8
Q ss_pred CCCcEEEEEcCCCCceee--cCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-CCCCCCCCC
Q 036746 73 RYQRVTILDLQNLKLVGT--LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP-ASTSNCSNL 149 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 149 (281)
..++++.|++++|.+.+. .|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 346788888888887765 36778888888999998888874 55778888999999999999886666 578889999
Q ss_pred cEEEccCCCCCCCCCcccCCCCCCcEEeccccccccC-CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEccc
Q 036746 150 LVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228 (281)
Q Consensus 150 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 228 (281)
++|++++|.+.+..|..+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 9999999999888888889999999999999988863 678888999999999999999888888899999999999999
Q ss_pred CccccccChhccCCCCCcEEEcccCcccccCChhhhhCCC-CCCEEeccCccCC
Q 036746 229 NNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLP-NLRIFSITGNQFT 281 (281)
Q Consensus 229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~-~L~~L~l~~N~lt 281 (281)
|++++..|..+..+++|+.|++++|+++ .+|..+. .++ +|++|++++|+++
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~-~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ-HFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG-GSCTTCCEEECCSCCCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh-hhcccCcEEEccCCCcc
Confidence 9998877888999999999999999988 7777755 566 5999999999874
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=4e-27 Score=217.40 Aligned_cols=204 Identities=21% Similarity=0.352 Sum_probs=174.6
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC-Ccc-CCchhccCC------CCCCEEEccCccCcccCCC--C
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS-FTN-AIPPQIGHL------RRLQILYLQINSFDGEIPA--S 142 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~ 142 (281)
..++++.|++++|.+.+.+|..++++++|++|++++|. +.+ .+|..++.+ ++|++|++++|.++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 45789999999999999999999999999999999998 887 788877776 89999999999998 8888 8
Q ss_pred CCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCC-CCEEEcccCcCcccCCccCCCCC--
Q 036746 143 TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS-LRGLSLSRNGFYGSIPDTFGGLK-- 219 (281)
Q Consensus 143 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~p~~~~~l~-- 219 (281)
+.++++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 9999999999999999988888 8888889999999998887 77877888888 999999998888 7787776654
Q ss_pred CCCEEEcccCccccccChhcc-------CCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 220 NLVNLSLVVNNLSGTIPPSIF-------NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 220 ~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+|+.|++++|.+++.+|..+. .+++|+.|++++|.++ .+|..++..+++|++|++++|+++
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence 788888888888877777777 6778888888888888 677777767888888888888764
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.3e-25 Score=204.67 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=114.1
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCch-hccCCCCCCEEEccCccCcccC--CCCCCCCCCCcE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPP-QIGHLRRLQILYLQINSFDGEI--PASTSNCSNLLV 151 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~ 151 (281)
++++.|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+..+++|++
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence 4455555555555544444455555555555555554433332 2455555555555555555332 445555666666
Q ss_pred EEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCc-ccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCc
Q 036746 152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 152 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 230 (281)
|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 66666665555555556666666666666665544332 25556666666666666665555566666666666666666
Q ss_pred cccc---cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 231 LSGT---IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 231 l~~~---~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+++. .+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|++
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-SLKMMNHVDLSHNRL 512 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCC
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChhhhc-cccCCCEEECCCCcc
Confidence 6541 123455566666666666666644444443 566666666666655
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.5e-25 Score=184.72 Aligned_cols=194 Identities=22% Similarity=0.221 Sum_probs=150.5
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.|++.++.+.. + +.+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 678888888887653 2 347788888888888888874 3 46778888888888888888655566788888888888
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 88888866666678888888888888888766666677888888888888888866666778888888888888888876
Q ss_pred cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+..+..+++|+.|++++|++.+. +++|+.|+++.|++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKH 234 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHT
T ss_pred CHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhC
Confidence 666678888888888888887743 45566666665554
No 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1e-24 Score=180.79 Aligned_cols=184 Identities=24% Similarity=0.242 Sum_probs=164.2
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
..++.|+++++.+.+..+..+..+++|++|++++|.+....+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 56899999999998777778999999999999999999666666789999999999999999655567889999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 99999977778899999999999999999866666689999999999999999977777899999999999999999966
Q ss_pred cChhccCCCCCcEEEcccCccccc
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGE 258 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~ 258 (281)
.+..+..+++|+.|++++|++...
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 666788899999999999998743
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=4.9e-26 Score=206.72 Aligned_cols=205 Identities=18% Similarity=0.169 Sum_probs=171.6
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..|..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57999999999999888889999999999999999999888888999999999999999999665566999999999999
Q ss_pred cCCCCCC-CCCcccCCCCCCcEEeccccccccCCC-cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746 155 ALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 155 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
++|.+.+ ..|..++.+++|++|++++|...+.+| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999986 356789999999999999998544554 67899999999999999999889999999999999999998886
Q ss_pred cccChh-ccCCCCCcEEEcccCcccccC--ChhhhhCCCCCCEEeccCccC
Q 036746 233 GTIPPS-IFNISSIQTFDVGSTYIEGEM--PLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 233 ~~~p~~-l~~l~~L~~L~l~~n~i~~~~--p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+|.. +..+++|+.|++++|.+++.. |..+...+++|+.|++++|++
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 44443 356888999999999888531 223333566777777776654
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.9e-25 Score=205.13 Aligned_cols=203 Identities=20% Similarity=0.130 Sum_probs=175.1
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccC--CchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNA--IPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (281)
++++.|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCee
Confidence 45555555555433322 456788888888888888754 3778889999999999999988 577889999999999
Q ss_pred EccCCCCCCCCC-cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCccc-CCccCCCCCCCCEEEcccCc
Q 036746 153 SLALNHLVGKIP-SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 153 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~ 230 (281)
++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 999999987766 6789999999999999999988899999999999999999999874 78899999999999999999
Q ss_pred cccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 231 l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+++..|..+..+++|++|++++|++++..|..+. .+++|+.|++++|+++
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT-TCTTCCEEECTTSCCC
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHcc-CCCcCCEEECCCCcCc
Confidence 9988888999999999999999999977677665 7999999999999985
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.1e-24 Score=202.76 Aligned_cols=204 Identities=22% Similarity=0.238 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCc-hhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-PQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.++.|++++|.+.+..|..+..+++|++|++++|.+.+.+| ..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56667777777777777777778888888888887765544 56777777777777777766555555555555555555
Q ss_pred cCCCCC--CCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC--------ccCCCCCCCCEE
Q 036746 155 ALNHLV--GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP--------DTFGGLKNLVNL 224 (281)
Q Consensus 155 ~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p--------~~~~~l~~L~~L 224 (281)
++|.+. +..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+.++++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 555554 3445555555556666665555554444445555555555555555543211 124455555555
Q ss_pred EcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 225 SLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 225 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++++|+++...+..+.++++|+.|++++|+++ .+|...+..+++|+.|++++|++
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcC
Confidence 55555555222223455555555555555555 34444433455555555555544
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=5.1e-25 Score=198.84 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=65.5
Q ss_pred CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc--ccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG--TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN 269 (281)
Q Consensus 192 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~ 269 (281)
..+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|...+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456677777888887777677777778888888888888775 455667777888888888888776577654456677
Q ss_pred CCEEeccCccC
Q 036746 270 LRIFSITGNQF 280 (281)
Q Consensus 270 L~~L~l~~N~l 280 (281)
|+.|++++|++
T Consensus 401 L~~L~Ls~N~l 411 (520)
T 2z7x_B 401 LLSLNMSSNIL 411 (520)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECcCCCC
Confidence 77777777765
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1.9e-24 Score=177.32 Aligned_cols=179 Identities=22% Similarity=0.268 Sum_probs=158.8
Q ss_pred CCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEec
Q 036746 99 SFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLST 178 (281)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (281)
...++++++++.+. .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45688999999998 6776654 68999999999999777778999999999999999999888888999999999999
Q ss_pred cccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccccc
Q 036746 179 TANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGE 258 (281)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~ 258 (281)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-S 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-C
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-c
Confidence 999999777778899999999999999999666777899999999999999999666668999999999999999999 5
Q ss_pred CChhhhhCCCCCCEEeccCccCC
Q 036746 259 MPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 259 ~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
++...+..+++|+.|++++|+++
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHHHHhCCCCCCEEEeeCCcee
Confidence 55555558999999999999974
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=8e-25 Score=199.41 Aligned_cols=89 Identities=22% Similarity=0.232 Sum_probs=62.8
Q ss_pred CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc--ccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG--TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN 269 (281)
Q Consensus 192 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~ 269 (281)
..+++|++|++++|.+++.+|..+.++++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+|...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 455677777777777776677777777777888887777774 234556777778888888887776566655556666
Q ss_pred CCEEeccCccC
Q 036746 270 LRIFSITGNQF 280 (281)
Q Consensus 270 L~~L~l~~N~l 280 (281)
|++|++++|++
T Consensus 430 L~~L~l~~n~l 440 (562)
T 3a79_B 430 ILVLNLSSNML 440 (562)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCCC
Confidence 77777776665
No 47
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=9e-26 Score=190.82 Aligned_cols=200 Identities=20% Similarity=0.236 Sum_probs=169.4
Q ss_pred CcEEEEEcCCCCceeecCccc--cCCCCCCEEeCCCCCCccCCc----hhccCCCCCCEEEccCccCcccCCCCCCCCCC
Q 036746 75 QRVTILDLQNLKLVGTLSPHI--GNLSFLQKLDLRNNSFTNAIP----PQIGHLRRLQILYLQINSFDGEIPASTSNCSN 148 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 148 (281)
.+++.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 459999999999999999888 899999999999999986544 34457999999999999999777789999999
Q ss_pred CcEEEccCCCCCCC--C--CcccCCCCCCcEEeccccccccCCCc----ccCCCCCCCEEEcccCcCcccCCccCCCC--
Q 036746 149 LLVVSLALNHLVGK--I--PSEFGSLSKLQFLSTTANNLIGNIPS----SLGNLSSLRGLSLSRNGFYGSIPDTFGGL-- 218 (281)
Q Consensus 149 L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~p~~~~~l-- 218 (281)
|++|++++|++.+. + +..+..+++|++|++++|.+. .++. .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999997642 2 233478899999999999986 3332 24678999999999999998778777776
Q ss_pred -CCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 219 -KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 219 -~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
++|++|++++|+++ .+|..+. ++|+.|++++|++++ +|. + ..+++|+.|++++|+|+
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~-~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-P-DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-T-TSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-h-hhCCCccEEECcCCCCC
Confidence 69999999999999 6787764 799999999999994 444 2 47899999999999985
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=200.22 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=51.4
Q ss_pred CCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc--cCChhhhhCCCCCCEEeccCccCC
Q 036746 216 GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG--EMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~--~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..+++|++|++++|.+++.+|..+..+++|+.|++++|++++ .+|..+. .+++|++|++++|+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVS 387 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCB
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCC
Confidence 567788888888888887778888888888888888888885 3444444 7888888888888764
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=209.39 Aligned_cols=110 Identities=21% Similarity=0.244 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCCceeec-CccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCC--CCCCCCCcE
Q 036746 75 QRVTILDLQNLKLVGTL-SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS--TSNCSNLLV 151 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~ 151 (281)
.+++.|++++|...+.+ |..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 44444444444333333 344555555555555555555444555555555555555555555433333 555555555
Q ss_pred EEccCCCCCCCCC-cccCCCCCCcEEeccccccc
Q 036746 152 VSLALNHLVGKIP-SEFGSLSKLQFLSTTANNLI 184 (281)
Q Consensus 152 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~ 184 (281)
|++++|.+.+..+ ..++++++|++|++++|.+.
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 5555555543322 34555555555555555443
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.2e-24 Score=185.55 Aligned_cols=204 Identities=22% Similarity=0.189 Sum_probs=155.4
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV 152 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (281)
..++++.|++++|.+.+..|..++++++|++|++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 4578999999999998888888999999999999999887 4555443 678888888888774444457777777777
Q ss_pred EccCCCCCC--CCCcccCCC--------------------CCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCccc
Q 036746 153 SLALNHLVG--KIPSEFGSL--------------------SKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS 210 (281)
Q Consensus 153 ~l~~n~~~~--~~~~~l~~l--------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 210 (281)
++++|.+.. ..+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 777777642 333333322 4677777777777766667788888999999999998877
Q ss_pred CCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhC------CCCCCEEeccCccCC
Q 036746 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTT------LPNLRIFSITGNQFT 281 (281)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~------~~~L~~L~l~~N~lt 281 (281)
.+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .++...+.. .++|+.|++++|+++
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCccc
Confidence 7778888899999999999988 77888888899999999999888 444433322 466888888888763
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=8e-25 Score=178.16 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=170.4
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC-CccCCchhccCCCCCCEEEccC-ccCcccCCCCCCCCCCCcEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS-FTNAIPPQIGHLRRLQILYLQI-NSFDGEIPASTSNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 152 (281)
.+++.|++++|++.+..+..+.++++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 579999999999988777789999999999999997 8766666899999999999998 99996666788999999999
Q ss_pred EccCCCCCCCCCcccCCCCCCc---EEecccc-ccccCCCcccCCCCCCC-EEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746 153 SLALNHLVGKIPSEFGSLSKLQ---FLSTTAN-NLIGNIPSSLGNLSSLR-GLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 153 ~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 227 (281)
++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.++ .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999985 666 88888888 9999999 88766666789999999 9999999998 555444344899999999
Q ss_pred cCc-cccccChhccCC-CCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746 228 VNN-LSGTIPPSIFNI-SSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 228 ~n~-l~~~~p~~l~~l-~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
+|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence 995 986666778888 99999999999998 67764 57899999998864
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.5e-27 Score=200.59 Aligned_cols=200 Identities=24% Similarity=0.289 Sum_probs=151.9
Q ss_pred EEEEEcCCCCc-eeecCcccc-------CCCCCCEEeCCCCCCccCCchhc--cCCCCCCEEEccCccCcccCCCCCCCC
Q 036746 77 VTILDLQNLKL-VGTLSPHIG-------NLSFLQKLDLRNNSFTNAIPPQI--GHLRRLQILYLQINSFDGEIPASTSNC 146 (281)
Q Consensus 77 l~~L~l~~~~l-~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l 146 (281)
++.|+++++.+ .+.+|..+. ++++|++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 45556666666 334555444 68888999999988887777765 7888899999999888855 7666665
Q ss_pred -----CCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccC--CCccc--CCCCCCCEEEcccCcCcc--cCC-cc
Q 036746 147 -----SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN--IPSSL--GNLSSLRGLSLSRNGFYG--SIP-DT 214 (281)
Q Consensus 147 -----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~p-~~ 214 (281)
++|++|++++|.+.+..+..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++ .++ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 8889999999988877778888888999999988887654 23333 778889999999988873 222 33
Q ss_pred CCCCCCCCEEEcccCccccccC-hhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 215 FGGLKNLVNLSLVVNNLSGTIP-PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 215 ~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|+|+
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD 287 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCC
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCC
Confidence 4567889999999998886654 45556788999999999888 7777654 78899999998875
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.5e-24 Score=178.67 Aligned_cols=195 Identities=19% Similarity=0.240 Sum_probs=165.8
Q ss_pred EEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCC
Q 036746 80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHL 159 (281)
Q Consensus 80 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 159 (281)
+++..+.+.+.. ....+++|+.|++++|.+. .+ ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+
T Consensus 24 l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 24 ANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCC
T ss_pred HHhcCccccccc--ccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCcc
Confidence 344444443332 3457889999999999987 33 358899999999999999984 3 4788999999999999999
Q ss_pred CCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhc
Q 036746 160 VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSI 239 (281)
Q Consensus 160 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l 239 (281)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh
Confidence 97777778999999999999999997777778999999999999999997777778999999999999999997777778
Q ss_pred cCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 240 FNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 240 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..+++|++|++++|.+++ ++...+..+++|+.|++++|+++
T Consensus 178 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCcc
Confidence 899999999999999995 55555558999999999999874
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.5e-24 Score=180.26 Aligned_cols=197 Identities=19% Similarity=0.209 Sum_probs=168.2
Q ss_pred EEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCC
Q 036746 80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHL 159 (281)
Q Consensus 80 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 159 (281)
.+..+.++. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444454443 4565553 5799999999999977777899999999999999999976677899999999999999999
Q ss_pred CCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCccc-CCccCCCCCCCCEEEcccCccccccChh
Q 036746 160 VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLSGTIPPS 238 (281)
Q Consensus 160 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 238 (281)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 977778899999999999999999876666799999999999999999863 6899999999999999999999776677
Q ss_pred ccCCCCCc----EEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 239 IFNISSIQ----TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 239 l~~l~~L~----~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+..+++|+ +|++++|.++ .++...+ ...+|+.|++++|+++
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLK 213 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCS
T ss_pred hhhhhhccccceeeecCCCccc-ccCcccc-CCCcccEEECCCCcee
Confidence 77666666 8999999999 5666665 4569999999999875
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=4.2e-24 Score=198.80 Aligned_cols=207 Identities=22% Similarity=0.238 Sum_probs=181.3
Q ss_pred CCcEEEEEcCCCCceeecC-ccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCc--ccCCCCCCCCCCCc
Q 036746 74 YQRVTILDLQNLKLVGTLS-PHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD--GEIPASTSNCSNLL 150 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~ 150 (281)
.++++.|++++|.+.+.+| ..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+. +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 4789999999999988776 67899999999999999999888889999999999999999987 57888999999999
Q ss_pred EEEccCCCCCCCCCcccCCCCCCcEEeccccccccCC--------CcccCCCCCCCEEEcccCcCcccCCccCCCCCCCC
Q 036746 151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNI--------PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV 222 (281)
Q Consensus 151 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--------~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 222 (281)
+|++++|.+++..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++...+..+.++++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 9999999999777778999999999999999987532 12378889999999999999944446789999999
Q ss_pred EEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhh-CCCCCCEEeccCccCC
Q 036746 223 NLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGT-TLPNLRIFSITGNQFT 281 (281)
Q Consensus 223 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~-~~~~L~~L~l~~N~lt 281 (281)
.|++++|++++..+..+..+++|+.|++++|++++ ++...+. .+++|+.|++++|++.
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB-CCHHHHHHHHTTCSEEECTTCCCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc-cChhHhcccccccCEEEccCCCcc
Confidence 99999999996666667899999999999999995 5555443 5899999999999874
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=3.7e-25 Score=209.05 Aligned_cols=203 Identities=21% Similarity=0.300 Sum_probs=164.7
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC-Ccc-CCchhccCC-------CCCCEEEccCccCcccCCC--
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS-FTN-AIPPQIGHL-------RRLQILYLQINSFDGEIPA-- 141 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~-- 141 (281)
..++++.|++++|.+.+.+|..++++++|++|++++|. +.+ .+|..+..+ ++|++|++++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 35789999999999999999999999999999999998 887 677766554 49999999999999 8888
Q ss_pred CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCC-CCEEEcccCcCcccCCccCCCCCC
Q 036746 142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS-LRGLSLSRNGFYGSIPDTFGGLKN 220 (281)
Q Consensus 142 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~p~~~~~l~~ 220 (281)
.+.++++|++|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..++.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 8999999999999999998 778 8899999999999999988 78888888888 999999999988 77877766544
Q ss_pred --CCEEEcccCccccccChhc---c--CCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 221 --LVNLSLVVNNLSGTIPPSI---F--NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 221 --L~~L~l~~n~l~~~~p~~l---~--~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
|+.|++++|.+++.+|... . ..++|+.|++++|.++ .+|..++..+++|+.|++++|+|+
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 8888888888876554322 1 2346777777777777 667666656777777777777653
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.6e-25 Score=198.19 Aligned_cols=199 Identities=22% Similarity=0.216 Sum_probs=143.2
Q ss_pred cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC--------------
Q 036746 76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA-------------- 141 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------- 141 (281)
+++.|++++|.+.+..|..+..+++|++|++++|.+.+..| +..+++|++|++++|.+++..+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 56666666666665555556666666666666666654333 55566666666665555421110
Q ss_pred --CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccC-CCCCCCEEEcccCcCcccCCccCCCC
Q 036746 142 --STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG-NLSSLRGLSLSRNGFYGSIPDTFGGL 218 (281)
Q Consensus 142 --~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l 218 (281)
....+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++. | ....+
T Consensus 113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l 190 (487)
T 3oja_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVF 190 (487)
T ss_dssp CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCC
T ss_pred CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccC
Confidence 012356788888888888877777888888999999999988877776665 688899999999988855 3 23358
Q ss_pred CCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 219 KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 219 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
++|+.|++++|.+++ +|+.+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|+++
T Consensus 191 ~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCBC
T ss_pred CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhc-cCCCCCEEEcCCCCCc
Confidence 899999999999985 5556888899999999999998 4777665 7889999999999874
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=9.3e-25 Score=199.02 Aligned_cols=203 Identities=23% Similarity=0.237 Sum_probs=173.6
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCC--chhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI--PPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 152 (281)
++++.++++++.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+ ++..+..+++|++|
T Consensus 325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L 401 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401 (570)
T ss_dssp SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEE
Confidence 4566666666665544443 67889999999999888543 6778899999999999999984 45558899999999
Q ss_pred EccCCCCCCCCC-cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc-ccCCccCCCCCCCCEEEcccCc
Q 036746 153 SLALNHLVGKIP-SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 153 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~ 230 (281)
++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 999999986655 56889999999999999999888888999999999999999997 5789999999999999999999
Q ss_pred cccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 231 l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+++..|..+..+++|++|++++|++++. |...+..+++|+.|++++|+++
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCccc
Confidence 9988899999999999999999999954 4444458999999999999975
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=4e-25 Score=187.47 Aligned_cols=193 Identities=22% Similarity=0.227 Sum_probs=145.5
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
.++++.|++++|.+.+..+ +..+++|++|++++|.+.+ +...++|++|++++|.+++..+. .+++|++|+
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~ 126 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIY 126 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEE
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEE
Confidence 3556666666666654443 5566666666666666552 11235666666666666643332 357899999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCccc-CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.++
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC
Confidence 99999987667788889999999999999987666665 4688999999999999854 32 335899999999999998
Q ss_pred cccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 233 GTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 233 ~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+|..+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|+++
T Consensus 205 -~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -EECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCCB
T ss_pred -cchhhhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCCcc
Confidence 45666889999999999999999 6787765 7899999999999874
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=203.96 Aligned_cols=207 Identities=20% Similarity=0.224 Sum_probs=136.1
Q ss_pred CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchh--ccCCCCCCEEEccCccCcccCC-CCCCCCCCC
Q 036746 73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ--IGHLRRLQILYLQINSFDGEIP-ASTSNCSNL 149 (281)
Q Consensus 73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 149 (281)
..++++.|++++|.+.+..|..++++++|++|++++|.+.+..+.. |.++++|++|++++|.+++..+ ..+.++++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 3478899999999998888888999999999999999888755554 7888999999999998885544 467888888
Q ss_pred cEEEccCCCCCCCCCcccCC--------------------------CCC------CcEEeccccc---------------
Q 036746 150 LVVSLALNHLVGKIPSEFGS--------------------------LSK------LQFLSTTANN--------------- 182 (281)
Q Consensus 150 ~~L~l~~n~~~~~~~~~l~~--------------------------l~~------L~~L~l~~n~--------------- 182 (281)
++|++++|.+.+..+..+.. +++ |+.|++++|.
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 88888888776544433221 111 4455554443
Q ss_pred -----------------------------------------------cccCCCcccCCCCCCCEEEcccCcCcccCCccC
Q 036746 183 -----------------------------------------------LIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF 215 (281)
Q Consensus 183 -----------------------------------------------~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 215 (281)
+.+..+..+..+++|++|++++|.+.+..|..+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 333333444455555666666666655555556
Q ss_pred CCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 216 GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
..+++|+.|++++|.+++..|..+..+++|+.|++++|.+. .++...+..+++|+.|++++|++
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCS
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCC
Confidence 66666666666666665555556666666666666666665 33333333566666666666655
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=7.8e-24 Score=178.75 Aligned_cols=190 Identities=20% Similarity=0.329 Sum_probs=160.8
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ + ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence 678999999998864 44 58899999999999999984 444 8899999999999999984 4 36889999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC
Confidence 9999985 44 389999999999999998754 33 8889999999999999985 443 88999999999999999854
Q ss_pred cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+. +..+++|++|++++|++++ ++. + ..+++|+.|++++|+++
T Consensus 189 -~~-l~~l~~L~~L~L~~N~l~~-~~~-l-~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 189 -SP-LASLPNLIEVHLKNNQISD-VSP-L-ANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -GG-GGGCTTCCEEECTTSCCCB-CGG-G-TTCTTCCEEEEEEEEEE
T ss_pred -hh-hcCCCCCCEEEccCCccCc-ccc-c-cCCCCCCEEEccCCeee
Confidence 33 7889999999999999995 442 4 47999999999999874
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=4.4e-24 Score=193.79 Aligned_cols=205 Identities=21% Similarity=0.273 Sum_probs=179.5
Q ss_pred CCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC
Q 036746 62 FCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA 141 (281)
Q Consensus 62 ~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 141 (281)
.|.|.++ |+ .++++++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c~----------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD----------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE----------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE----------CCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4888776 64 3455554 5666554 7999999999999988888999999999999999999987788
Q ss_pred CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccccc-CCCcccCCCCCCCEEEcccCcCcccCC-ccCCCCC
Q 036746 142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLK 219 (281)
Q Consensus 142 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~ 219 (281)
.|.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+.+| ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999997777779999999999999999975 356789999999999999999555555 6899999
Q ss_pred CCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 220 NLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 220 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+...+++|++|++++|+++
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccc
Confidence 9999999999999889999999999999999999987 677777668999999999999874
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.6e-23 Score=174.05 Aligned_cols=179 Identities=25% Similarity=0.229 Sum_probs=162.3
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..+..+..+++|++|++++|.+.+. +. ...+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 6799999999999988888999999999999999999853 33 278999999999999998 88999999999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+.++++|+.|++++|.++ .
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 999999777788999999999999999998766677889999999999999999655667788999999999999998 7
Q ss_pred cChhccCCCCCcEEEcccCcccc
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
+|..+....+|+.+++++|++..
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCC
T ss_pred cChhhcccccCCeEEeCCCCccC
Confidence 88888889999999999998863
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=5.9e-24 Score=193.69 Aligned_cols=160 Identities=23% Similarity=0.169 Sum_probs=129.0
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 56888999999888777778888999999999999888777778888899999999999888666678888899999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEecccccccc-CCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCC----CEEEcccC
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL----VNLSLVVN 229 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L----~~L~l~~n 229 (281)
++|.+....+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..|..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9988885555568888899999999888875 468888888889999998888876666666666666 66676666
Q ss_pred ccccc
Q 036746 230 NLSGT 234 (281)
Q Consensus 230 ~l~~~ 234 (281)
.+++.
T Consensus 188 ~l~~~ 192 (570)
T 2z63_A 188 PMNFI 192 (570)
T ss_dssp CCCEE
T ss_pred Cceec
Confidence 65543
No 65
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.91 E-value=1e-23 Score=191.02 Aligned_cols=195 Identities=19% Similarity=0.290 Sum_probs=163.5
Q ss_pred CCCCCCCC-----cccce-EecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEE
Q 036746 56 WNDSIHFC-----QWYGV-TCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILY 129 (281)
Q Consensus 56 w~~~~~~c-----~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 129 (281)
|.....+| .|.++ .|.. .+++.|+++++++.+ +|..+. ++|++|++++|.+. .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 43344556 68887 6754 589999999999986 777663 89999999999998 676 4689999999
Q ss_pred ccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcc
Q 036746 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 130 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
+++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 99999995 777 665 99999999999996 666 68999999999999985 665 57899999999999985
Q ss_pred cCCccCCCCCCCCEEEcccCccccccChhccCCCCC-------cEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSI-------QTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.|+ .+|..++ .+++|+.|++++|+|+
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLS 243 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCC
T ss_pred -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCC
Confidence 777 65 89999999999998 6777 554 77 99999999999 7999898 4999999999999985
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=8e-24 Score=192.83 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=132.8
Q ss_pred cCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCC--CCcccCCCCCCcEEeccccccccCCCc-ccCCCCC
Q 036746 120 GHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGK--IPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSS 196 (281)
Q Consensus 120 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~ 196 (281)
..+++|++|++++|.+++..|..+.++++|++|++++|.+.+. +|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5678899999999999877888888899999999999988852 345688889999999999988875554 4778889
Q ss_pred CCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEecc
Q 036746 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT 276 (281)
Q Consensus 197 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~ 276 (281)
|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|...+..+++|+.|+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 99999999999877776654 78999999999998 77887779999999999999999 7887755589999999999
Q ss_pred CccCC
Q 036746 277 GNQFT 281 (281)
Q Consensus 277 ~N~lt 281 (281)
+|+++
T Consensus 506 ~N~~~ 510 (562)
T 3a79_B 506 DNPWD 510 (562)
T ss_dssp SCCBC
T ss_pred CCCcC
Confidence 99874
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=6.7e-24 Score=172.69 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=158.6
Q ss_pred ecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCcc-CcccCCCCCCCCCCCcEEEccC-CCCCCCCCccc
Q 036746 90 TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS-FDGEIPASTSNCSNLLVVSLAL-NHLVGKIPSEF 167 (281)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l 167 (281)
.+|. +. +++++|++++|.+.+..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+....+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 43 489999999999997777789999999999999997 8855556889999999999998 99996666788
Q ss_pred CCCCCCcEEeccccccccCCCcccCCCCCCC---EEEcccC-cCcccCCccCCCCCCCC-EEEcccCccccccChhccCC
Q 036746 168 GSLSKLQFLSTTANNLIGNIPSSLGNLSSLR---GLSLSRN-GFYGSIPDTFGGLKNLV-NLSLVVNNLSGTIPPSIFNI 242 (281)
Q Consensus 168 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l 242 (281)
..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+.++++|+ +|++++|.++ .+|......
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 999999999999999985 676 88888888 9999999 89866677899999999 9999999998 566554444
Q ss_pred CCCcEEEcccCc-ccccCChhhhhCC-CCCCEEeccCccCC
Q 036746 243 SSIQTFDVGSTY-IEGEMPLDLGTTL-PNLRIFSITGNQFT 281 (281)
Q Consensus 243 ~~L~~L~l~~n~-i~~~~p~~~~~~~-~~L~~L~l~~N~lt 281 (281)
++|+.|++++|+ ++ .+|...+..+ ++|+.|++++|+++
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccc
Confidence 899999999995 88 6666666688 99999999999885
No 68
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=3.6e-23 Score=177.37 Aligned_cols=174 Identities=22% Similarity=0.318 Sum_probs=115.0
Q ss_pred ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (281)
+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+... +. +..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~ 246 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLT 246 (347)
T ss_dssp GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCC
Confidence 3344444444444444442 221 44445555555555554422 11 55667777777777777643 33 77778888
Q ss_pred EEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746 175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254 (281)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 254 (281)
+|++++|.+.+ + ..+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+
T Consensus 247 ~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 247 WLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred EEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 88888887764 2 457777888888888888774 3 356778888888888888887777778888888888888888
Q ss_pred ccccCChhhhhCCCCCCEEeccCccCC
Q 036746 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 255 i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+++..| + ..+++|++|++++|+|+
T Consensus 323 l~~~~~--~-~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--L-ASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--G-GGCTTCSEESSSCC---
T ss_pred cccccC--h-hhhhccceeehhhhccc
Confidence 885444 3 36888888888888875
No 69
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.1e-22 Score=172.52 Aligned_cols=198 Identities=21% Similarity=0.308 Sum_probs=133.0
Q ss_pred CCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcE
Q 036746 72 PRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV 151 (281)
Q Consensus 72 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 151 (281)
...++++.|++++|.+.+.. . +..+++|++|++++|......+ .+..+++|++|++++|.+.+ ++. +..+++|++
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~ 181 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYS 181 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSE
T ss_pred cCCCcCCEEECcCCcccCch-h-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCE
Confidence 34467788888887776432 2 6667777777777765443332 35556666666666555542 221 444455555
Q ss_pred EEccCCCCCCCCC--------------------cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccC
Q 036746 152 VSLALNHLVGKIP--------------------SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI 211 (281)
Q Consensus 152 L~l~~n~~~~~~~--------------------~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 211 (281)
|++++|.+.+..+ ..+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ +
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~ 258 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I 258 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C
Confidence 5555554442111 1156677788888888777643 33 7778888888888888874 3
Q ss_pred CccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 212 PDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..+..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++..|..+. .+++|+.|++++|+++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHIT 324 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCC
T ss_pred -hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccc
Confidence 457788899999999998875 3 4578889999999999999865555554 7999999999999875
No 70
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=7.2e-23 Score=163.04 Aligned_cols=181 Identities=21% Similarity=0.202 Sum_probs=129.6
Q ss_pred CCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC
Q 036746 62 FCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA 141 (281)
Q Consensus 62 ~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 141 (281)
.|.|.++.|.. +++. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus 6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 46777776643 3332 233333 35778888888888765555677788888888888888744444
Q ss_pred CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCC
Q 036746 142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL 221 (281)
Q Consensus 142 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 221 (281)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 56778888888888888875555557778888888888888775555557778888888888888875555567778888
Q ss_pred CEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhh
Q 036746 222 VNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264 (281)
Q Consensus 222 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~ 264 (281)
+.|++++|.+.+ .+++|+.|++..|.++|.+|..+.
T Consensus 151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 888888887653 345778888888888888876654
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.6e-22 Score=180.20 Aligned_cols=190 Identities=24% Similarity=0.325 Sum_probs=131.0
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..| ++.+++|++|++++|.+.+ + +.+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 556666666666554433 4556666666666666653 2 345667777777777777764322 667777777777
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..| +..+++|++|++++|.+++.
T Consensus 273 ~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 273 GANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 77777743 33 6777778888887777764322 6677788888888888775554 56778888888888888753
Q ss_pred cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..+..+++|+.|++++|++++..| + ..+++|+.|++++|+++
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP--L-ANLTRITQLGLNDQAWT 388 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG--G-TTCTTCCEEECCCEEEE
T ss_pred --hhhccCCCCCEEeCCCCccCccch--h-hcCCCCCEEeccCCccc
Confidence 467788888888888888886655 3 37888888888888753
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=2.1e-23 Score=176.89 Aligned_cols=193 Identities=17% Similarity=0.133 Sum_probs=165.7
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence 689999999999998878889999999999999999986544 8899999999999999984 33 3389999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccC-CCCCCCCEEEcccCcccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF-GGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~ 233 (281)
++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99999854433 36889999999999987777788889999999999999997777666 478999999999999985
Q ss_pred ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
. +. ...+++|++|++++|.++ .+|..+. .+++|+.|++++|+++
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 184 V-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV 227 (317)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC
T ss_pred c-cc-ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc
Confidence 4 33 335899999999999999 5666665 7999999999999985
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.2e-21 Score=174.02 Aligned_cols=183 Identities=20% Similarity=0.191 Sum_probs=115.5
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+. | ++.+++|++|++++|.+.+. + +.++++|++|++++|.+++ +| +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 5666777777766553 2 66666777777777766642 2 5666777777777777663 33 666677777777
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++.
T Consensus 135 ~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 135 ARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 77766642 2556666666666666444343 25566677777777777664 34 56666677777777766643
Q ss_pred cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+..+++|+.|++++|++++ +| + ..+++|+.|++++|+++
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~-~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-ID--V-TPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCS
T ss_pred ---ccccCCCCCEEECcCCcccc-cC--c-cccCCCCEEEeeCCcCC
Confidence 25666677777777777764 55 3 25667777777776653
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.2e-24 Score=189.35 Aligned_cols=209 Identities=19% Similarity=0.251 Sum_probs=167.5
Q ss_pred CCCcEEEEEcCCCC---ceeecCccc-------cCCCCCCEEeCCCCCCcc----CCchhccCCCCCCEEEccCccCccc
Q 036746 73 RYQRVTILDLQNLK---LVGTLSPHI-------GNLSFLQKLDLRNNSFTN----AIPPQIGHLRRLQILYLQINSFDGE 138 (281)
Q Consensus 73 ~~~~l~~L~l~~~~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~ 138 (281)
..++++.|++++|. +.+.+|..+ ..+++|++|++++|.+.+ .++..+..+++|++|++++|.+...
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 45789999998864 445555544 688999999999999986 3666788899999999999998743
Q ss_pred CCC----CCCCC---------CCCcEEEccCCCCC-CCCC---cccCCCCCCcEEecccccccc-----CCCcccCCCCC
Q 036746 139 IPA----STSNC---------SNLLVVSLALNHLV-GKIP---SEFGSLSKLQFLSTTANNLIG-----NIPSSLGNLSS 196 (281)
Q Consensus 139 ~~~----~~~~l---------~~L~~L~l~~n~~~-~~~~---~~l~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~ 196 (281)
.+. .+..+ ++|++|++++|.+. ..++ ..+..+++|++|++++|.+.. ..+..+..+++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 333 33334 89999999999987 3344 456778999999999998862 23336788999
Q ss_pred CCEEEcccCcCc----ccCCccCCCCCCCCEEEcccCccccc----cChhccC--CCCCcEEEcccCcccc----cCChh
Q 036746 197 LRGLSLSRNGFY----GSIPDTFGGLKNLVNLSLVVNNLSGT----IPPSIFN--ISSIQTFDVGSTYIEG----EMPLD 262 (281)
Q Consensus 197 L~~L~l~~n~~~----~~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~--l~~L~~L~l~~n~i~~----~~p~~ 262 (281)
|++|++++|.++ ..+|..+..+++|+.|++++|.+++. ++..+.. +++|++|++++|.+++ .+|..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 999999999996 56788888999999999999999865 4566643 8999999999999997 48887
Q ss_pred hhhCCCCCCEEeccCccCC
Q 036746 263 LGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 263 ~~~~~~~L~~L~l~~N~lt 281 (281)
+...+++|+.|++++|+++
T Consensus 298 l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHCTTCCEEECTTSBSC
T ss_pred HHhcCCCceEEEccCCcCC
Confidence 7657899999999999985
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.4e-21 Score=171.97 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=162.3
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
.++++.|+++++.+.+. | .++.+++|++|++++|.+.+ +| +..+++|++|++++|.+++ ++ +.++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 37899999999999864 5 68999999999999999986 44 8899999999999999995 44 88999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+.+ ++ ++.+++|++|++++|.+.+. + +..+++|++|++++|...+.+ .+..+++|+.|++++|.+++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 99999986 44 88999999999999999863 3 888999999999999766566 47889999999999999985
Q ss_pred ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+| +..+++|+.|++++|.+++ ++ + ..+++|+.|++++|+++
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~-~~--l-~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITK-LD--L-NQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCS
T ss_pred -ec--cccCCCCCEEECcCCcCCe-ec--c-ccCCCCCEEECcCCccc
Confidence 55 7889999999999999995 43 4 37899999999999985
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.6e-23 Score=172.83 Aligned_cols=202 Identities=20% Similarity=0.237 Sum_probs=165.0
Q ss_pred CcEEEEEcCCCCceeecCc---cccCCCCCCEEeCCCCCCccCCchhc--cCCCCCCEEEccCccCcccCC----CCCCC
Q 036746 75 QRVTILDLQNLKLVGTLSP---HIGNLSFLQKLDLRNNSFTNAIPPQI--GHLRRLQILYLQINSFDGEIP----ASTSN 145 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~ 145 (281)
.+++.+.+.++.+....-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4577888888776532111 12245679999999999998888887 899999999999999986544 34557
Q ss_pred CCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccC--C--CcccCCCCCCCEEEcccCcCcccCCc----cCCC
Q 036746 146 CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN--I--PSSLGNLSSLRGLSLSRNGFYGSIPD----TFGG 217 (281)
Q Consensus 146 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~p~----~~~~ 217 (281)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 89999999999999988888999999999999999987542 2 233468899999999999997 3332 2467
Q ss_pred CCCCCEEEcccCccccccChhccCC---CCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 218 LKNLVNLSLVVNNLSGTIPPSIFNI---SSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 218 l~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLN 285 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCC
Confidence 8999999999999998778777776 69999999999999 7887663 79999999999985
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=9.8e-23 Score=182.38 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=143.6
Q ss_pred ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCc---------
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPS--------- 165 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------- 165 (281)
...+++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+..+.
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence 3345589999999999998888899999999999999999986555 88888898888888876532110
Q ss_pred -------ccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCC-CCCCCCEEEcccCccccccCh
Q 036746 166 -------EFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFG-GLKNLVNLSLVVNNLSGTIPP 237 (281)
Q Consensus 166 -------~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~ 237 (281)
....+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |.
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~ 186 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG 186 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc
Confidence 012356788888888888777677788888889999999988877777765 688899999999988854 32
Q ss_pred hccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 238 SIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 238 ~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
...+++|+.|++++|.+++ +|..+. .+++|+.|++++|+|+
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLV 227 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCC
T ss_pred -cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCc
Confidence 3358899999999999984 555655 7899999999999875
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.3e-21 Score=155.82 Aligned_cols=175 Identities=22% Similarity=0.183 Sum_probs=146.7
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 68999999999998776777889999999999999999666667889999999999999999555556789999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .++.|+.|+++.|.++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 9999997666678999999999999999986666668889999999999998763 456889999999999999
Q ss_pred cChhccCCCCCcEEEcccCcccccCC
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGEMP 260 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~~p 260 (281)
+|..++.++. ++..|...+..+
T Consensus 181 ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTCCBG
T ss_pred eeccCccccC----CccccccCCCcc
Confidence 9988876655 444554443333
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.7e-24 Score=181.06 Aligned_cols=202 Identities=20% Similarity=0.247 Sum_probs=152.1
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccC-CchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNA-IPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
.+++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5678888888887766554 55788888888888887754 667778888888888888888777777778888888888
Q ss_pred ccCC-CCCC-CCCcccCCCCCCcEEecccc-ccccC-CCcccCCCC-CCCEEEcccC--cCc-ccCCccCCCCCCCCEEE
Q 036746 154 LALN-HLVG-KIPSEFGSLSKLQFLSTTAN-NLIGN-IPSSLGNLS-SLRGLSLSRN--GFY-GSIPDTFGGLKNLVNLS 225 (281)
Q Consensus 154 l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~~~-~~~p~~~~~l~~L~~L~ 225 (281)
+++| .+++ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 8888 5664 25556777888888888888 76643 455567777 8888888888 454 34666677788888888
Q ss_pred cccCc-cccccChhccCCCCCcEEEcccCc-ccccCChhhhhCCCCCCEEeccCc
Q 036746 226 LVVNN-LSGTIPPSIFNISSIQTFDVGSTY-IEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 226 l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
+++|. +++..+..+..+++|++|++++|. +.......+. .+++|+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc
Confidence 88888 666677778888888888888884 3322222343 6888888888887
No 80
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.7e-21 Score=173.50 Aligned_cols=191 Identities=27% Similarity=0.376 Sum_probs=148.7
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
.++++.|++++|.+.+. +.+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++ + ..+..+++|++|+
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLD 249 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEE
Confidence 46778888888877543 347778888888888888875433 6678888888888888873 3 3567788899999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+.+..+ +..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 250 LANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred CCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 99888875433 78888899999998888754 33 7788899999999998885443 6788899999999999886
Q ss_pred ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
..| +..+++|+.|++++|++++ + ..+. .+++|+.|++++|+++
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSD-V-SSLA-NLTNINWLSAGHNQIS 366 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCC-C-GGGT-TCTTCCEEECCSSCCC
T ss_pred chh--hccCccCCEeECCCCccCC-c-hhhc-cCCCCCEEeCCCCccC
Confidence 544 6788999999999999885 3 3444 7899999999999874
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=2.8e-22 Score=184.47 Aligned_cols=201 Identities=20% Similarity=0.160 Sum_probs=143.8
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
..++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46788888888887766777888888888888888887666667888888888888888887544456788888888888
Q ss_pred cCCCCCCCCCcccCCCCCCcEEecccccccc-CCCcccCCCCCCCEEEcccCcCcccCCccCCCCCC----CCEEEcccC
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN----LVNLSLVVN 229 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~----L~~L~l~~n 229 (281)
++|.+++..+..|+.+++|++|++++|.+.. ..|..+..+++|++|++++|.+++..|..+..+.+ ...++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 8888886555667888888888888887764 35667777888888888888887666666654433 346777778
Q ss_pred ccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEecc
Q 036746 230 NLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT 276 (281)
Q Consensus 230 ~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~ 276 (281)
.++.. +........++.+++.+|.....++...+..++.++...+.
T Consensus 212 ~l~~i-~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 212 PMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp CCCEE-CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred ccccc-CcccccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 77743 33333445567777777765544544444466666655543
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2e-21 Score=163.93 Aligned_cols=172 Identities=26% Similarity=0.351 Sum_probs=148.2
Q ss_pred ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (281)
...+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ + +.+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 346789999999999988 455 5889999999999999998 4555 8999999999999999985 3 4689999999
Q ss_pred EEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746 175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254 (281)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 254 (281)
+|++++|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 99999999875 44 38999999999999999985433 8889999999999999985 444 8899999999999999
Q ss_pred ccccCChhhhhCCCCCCEEeccCccCC
Q 036746 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 255 i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+++ ++. + ..+++|+.|++++|+++
T Consensus 185 l~~-~~~-l-~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 185 ISD-ISP-L-ASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCC-CGG-G-GGCTTCCEEECTTSCCC
T ss_pred cCc-Chh-h-cCCCCCCEEEccCCccC
Confidence 984 443 4 47999999999999975
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=3.8e-21 Score=176.95 Aligned_cols=205 Identities=22% Similarity=0.242 Sum_probs=163.8
Q ss_pred CcEEEEEcCCCCce--eecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-CCCCCCCCCcE
Q 036746 75 QRVTILDLQNLKLV--GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP-ASTSNCSNLLV 151 (281)
Q Consensus 75 ~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 151 (281)
+.++.+++++|.+. +..+..+..+.+|+++++..+.... .+..+..+++|+.+++..+......+ ..+..+++++.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccc
Confidence 45556666665553 2334444555666666666665552 34456677888888888777664433 45778899999
Q ss_pred EEccCCCCCCCCCcccCCCCCCcEEeccccccc-cCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCc
Q 036746 152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLI-GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 152 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 230 (281)
++++.|.+.+..+..+..++.+++|++++|... +..|..+..+++|++|++++|++++..|..|.++++|++|++++|+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 999999999888888899999999999999754 3467889999999999999999998889999999999999999999
Q ss_pred cccccChhccCCCCCcEEEcccCcccccCChhhhhCC-CCCCEEeccCccCC
Q 036746 231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTL-PNLRIFSITGNQFT 281 (281)
Q Consensus 231 l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~-~~L~~L~l~~N~lt 281 (281)
+++..|..+..+++|+.||+++|++++..|..+. .+ ++|+.|++++|+++
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT-CCCTTCCEEECTTCCBC
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH-hhhCcCCEEEeeCCCCc
Confidence 9987788899999999999999999976666665 56 68999999999985
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=1.6e-21 Score=163.22 Aligned_cols=170 Identities=24% Similarity=0.330 Sum_probs=141.6
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
..+++.|+++++.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 36789999999988643 3 48889999999999999985 444 8899999999999999874 33 488899999999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+.+. +.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..| +..+++|+.|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999998853 5688899999999999988754 568888999999999999985544 8889999999999999984
Q ss_pred ccChhccCCCCCcEEEcccCcccc
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
++ .+..+++|+.|++++|++.+
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 44 47889999999999999874
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=182.94 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=166.8
Q ss_pred CcEEEEEcCCCCceeec----CccccCCCCCCEEeCCCCCC---ccCCchhc-------cCCCCCCEEEccCccCcc---
Q 036746 75 QRVTILDLQNLKLVGTL----SPHIGNLSFLQKLDLRNNSF---TNAIPPQI-------GHLRRLQILYLQINSFDG--- 137 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~l~~n~l~~--- 137 (281)
++++.|++++|.+.+.. +..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 67999999999987653 34577899999999999644 44455544 689999999999999986
Q ss_pred -cCCCCCCCCCCCcEEEccCCCCCCCCCcc----cCCC---------CCCcEEeccccccc-cCCC---cccCCCCCCCE
Q 036746 138 -EIPASTSNCSNLLVVSLALNHLVGKIPSE----FGSL---------SKLQFLSTTANNLI-GNIP---SSLGNLSSLRG 199 (281)
Q Consensus 138 -~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~~~-~~~~---~~l~~l~~L~~ 199 (281)
.+|..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+. +..+ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 46777888999999999999986433333 3333 89999999999986 3334 45667889999
Q ss_pred EEcccCcCcc-----cCCccCCCCCCCCEEEcccCccc----cccChhccCCCCCcEEEcccCccccc----CChhhh-h
Q 036746 200 LSLSRNGFYG-----SIPDTFGGLKNLVNLSLVVNNLS----GTIPPSIFNISSIQTFDVGSTYIEGE----MPLDLG-T 265 (281)
Q Consensus 200 L~l~~n~~~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~~l~~l~~L~~L~l~~n~i~~~----~p~~~~-~ 265 (281)
|++++|.+.. ..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999973 24447889999999999999996 56788899999999999999999865 344442 1
Q ss_pred CCCCCCEEeccCccCC
Q 036746 266 TLPNLRIFSITGNQFT 281 (281)
Q Consensus 266 ~~~~L~~L~l~~N~lt 281 (281)
.+++|+.|++++|+++
T Consensus 272 ~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIE 287 (386)
T ss_dssp SSCCCCEEECCSSCCB
T ss_pred cCCCeEEEECcCCcCC
Confidence 3899999999999875
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=2.5e-21 Score=166.97 Aligned_cols=175 Identities=21% Similarity=0.206 Sum_probs=126.8
Q ss_pred EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhcc-CCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC
Q 036746 79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG-HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN 157 (281)
Q Consensus 79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 157 (281)
.++++++++. .+|..+. +.++.|+|++|.+.+..+..+. ++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5777777775 4565443 4578888888888866666676 7888888888888888666667888888888888888
Q ss_pred CCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccC---CCCCCCCEEEcccCccccc
Q 036746 158 HLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF---GGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 158 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---~~l~~L~~L~l~~n~l~~~ 234 (281)
.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|++++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8876556667788888888888888776667777778888888888888774333334 4577777888888777744
Q ss_pred cChhccCCCC--CcEEEcccCccc
Q 036746 235 IPPSIFNISS--IQTFDVGSTYIE 256 (281)
Q Consensus 235 ~p~~l~~l~~--L~~L~l~~n~i~ 256 (281)
.+..+..++. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 4445666655 367777777766
No 87
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=5.2e-21 Score=153.67 Aligned_cols=153 Identities=25% Similarity=0.250 Sum_probs=131.3
Q ss_pred CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc
Q 036746 102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN 181 (281)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (281)
+.++++++.+. .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67888888887 5666553 68999999999999666668899999999999999999777888999999999999999
Q ss_pred ccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc
Q 036746 182 NLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9885555567889999999999999997778889999999999999999987766778889999999999998874
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=9.8e-24 Score=180.04 Aligned_cols=212 Identities=17% Similarity=0.186 Sum_probs=177.0
Q ss_pred CCCcccceEecCCCCcEEEEEcCCCCceeecCccccCC--CCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCccc
Q 036746 61 HFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNL--SFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGE 138 (281)
Q Consensus 61 ~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 138 (281)
.+..|+++.+++ ..++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 344688877653 45788999998875 4455666 8999999999999876555 56899999999999998865
Q ss_pred -CCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc-ccccC-CCcccCCCCCCCEEEcccC-cCccc-CCc
Q 036746 139 -IPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN-NLIGN-IPSSLGNLSSLRGLSLSRN-GFYGS-IPD 213 (281)
Q Consensus 139 -~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~p~ 213 (281)
++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+.+. ++..+..+++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 7778889999999999999998777888999999999999999 56542 5566778999999999999 88854 677
Q ss_pred cCCCCC-CCCEEEcccC--ccc-cccChhccCCCCCcEEEcccCc-ccccCChhhhhCCCCCCEEeccCcc
Q 036746 214 TFGGLK-NLVNLSLVVN--NLS-GTIPPSIFNISSIQTFDVGSTY-IEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 214 ~~~~l~-~L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
.+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+. .+++|+.|++++|.
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCT
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCC
Confidence 788899 9999999999 555 4567788899999999999999 7777777776 78999999999984
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1.6e-20 Score=151.68 Aligned_cols=156 Identities=24% Similarity=0.231 Sum_probs=133.1
Q ss_pred CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (281)
-+.++.+++.+. .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 367888888887 566654 37899999999999977788899999999999999999865556678999999999999
Q ss_pred cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCC
Q 036746 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP 260 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p 260 (281)
|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9998666667888999999999999998 788888899999999999999986656678889999999999999885443
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.2e-23 Score=177.10 Aligned_cols=205 Identities=18% Similarity=0.188 Sum_probs=158.9
Q ss_pred CcEEEEEcCCCCceeecC----ccccCCC-CCCEEeCCCCCCccCCchhccCC-----CCCCEEEccCccCcccCCCC--
Q 036746 75 QRVTILDLQNLKLVGTLS----PHIGNLS-FLQKLDLRNNSFTNAIPPQIGHL-----RRLQILYLQINSFDGEIPAS-- 142 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~-- 142 (281)
.+++.|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 569999999999987665 6677888 89999999999987767666654 89999999999998655443
Q ss_pred --CCCC-CCCcEEEccCCCCCCCCCcc----cCC-CCCCcEEeccccccccCCC----cccCCCC-CCCEEEcccCcCcc
Q 036746 143 --TSNC-SNLLVVSLALNHLVGKIPSE----FGS-LSKLQFLSTTANNLIGNIP----SSLGNLS-SLRGLSLSRNGFYG 209 (281)
Q Consensus 143 --~~~l-~~L~~L~l~~n~~~~~~~~~----l~~-l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~ 209 (281)
+..+ ++|++|++++|.++...+.. +.. .++|++|++++|.+.+..+ ..+...+ +|++|++++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3444 89999999999998655544 344 3589999999999875433 3344554 89999999999986
Q ss_pred cCCccC----CCC-CCCCEEEcccCccccc----cChhccC-CCCCcEEEcccCcccccCChh---hhhCCCCCCEEecc
Q 036746 210 SIPDTF----GGL-KNLVNLSLVVNNLSGT----IPPSIFN-ISSIQTFDVGSTYIEGEMPLD---LGTTLPNLRIFSIT 276 (281)
Q Consensus 210 ~~p~~~----~~l-~~L~~L~l~~n~l~~~----~p~~l~~-l~~L~~L~l~~n~i~~~~p~~---~~~~~~~L~~L~l~ 276 (281)
..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+.. +...+++|+.|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 665433 344 5999999999999853 4555655 459999999999998654422 33577899999999
Q ss_pred Ccc
Q 036746 277 GNQ 279 (281)
Q Consensus 277 ~N~ 279 (281)
+|+
T Consensus 262 ~n~ 264 (362)
T 3goz_A 262 YDI 264 (362)
T ss_dssp HHH
T ss_pred cCC
Confidence 997
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=2.1e-20 Score=151.02 Aligned_cols=166 Identities=23% Similarity=0.252 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC
Q 036746 53 LGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132 (281)
Q Consensus 53 ~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 132 (281)
...|..+...|.|.++.|. ++++ ..+|..+. ++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~------------~~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCR------------SKRH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp --CCCCTTCEEETTEEECT------------TSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhccCCCCCEEeCCEeEcc------------CCCc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC
Confidence 4456667788999887775 3333 24555443 7899999999999987788899999999999999
Q ss_pred ccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC
Q 036746 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP 212 (281)
Q Consensus 133 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 212 (281)
|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 9998444456789999999999999999666667889999999999999988 778888999999999999999996666
Q ss_pred ccCCCCCCCCEEEcccCccccc
Q 036746 213 DTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
..+..+++|+.|++++|.+...
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCTT
T ss_pred HHHhCCCCCCEEEeeCCCccCC
Confidence 7788999999999999998754
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=2.6e-20 Score=149.56 Aligned_cols=151 Identities=21% Similarity=0.236 Sum_probs=134.8
Q ss_pred EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCC
Q 036746 79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNH 158 (281)
Q Consensus 79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 158 (281)
.++++++++. .+|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 5667777765 5666554 789999999999997777789999999999999999998889999999999999999999
Q ss_pred CCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746 159 LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 159 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
+....+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99655566889999999999999999888889999999999999999999777778999999999999999886
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=3e-20 Score=149.24 Aligned_cols=153 Identities=26% Similarity=0.275 Sum_probs=130.8
Q ss_pred EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCc-hhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC
Q 036746 79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-PQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN 157 (281)
Q Consensus 79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 157 (281)
.++++++.+. .+|..+. ..+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 6888888876 4666554 467899999999986644 45789999999999999999776778999999999999999
Q ss_pred CCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 158 HLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 158 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99977777789999999999999999887788899999999999999999977788899999999999999988743
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=151.03 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=137.5
Q ss_pred CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-CCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746 102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP-ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (281)
+.+++++|.+. .+|..+ .+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 68999999988 567655 3467899999999996644 4578999999999999999977777899999999999999
Q ss_pred cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCC
Q 036746 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP 260 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p 260 (281)
|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99987777779999999999999999998888999999999999999999998778899999999999999999986544
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1e-20 Score=162.45 Aligned_cols=209 Identities=20% Similarity=0.148 Sum_probs=151.1
Q ss_pred CcccceEecCC---------CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCc-hhccCCCCCCE-EEcc
Q 036746 63 CQWYGVTCSPR---------YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-PQIGHLRRLQI-LYLQ 131 (281)
Q Consensus 63 c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~ 131 (281)
|.+..+.|... ..+++.|++++|++....+..|.++++|++|+|++|.+.+.+| ..|.++++++. +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56666777521 1568889999999875555678889999999999998865544 46778888765 5666
Q ss_pred CccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc-ccccCCCcccCCC-CCCCEEEcccCcCcc
Q 036746 132 INSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN-NLIGNIPSSLGNL-SSLRGLSLSRNGFYG 209 (281)
Q Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l-~~L~~L~l~~n~~~~ 209 (281)
.|+++...|..|..+++|++|++++|.+....+..+....++..+++.++ .+....+..+..+ ..+++|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 78888666778888999999999999888655556666777888888664 4443333445555 36888999999988
Q ss_pred cCCccCCCCCCCCEEEccc-CccccccC-hhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccC
Q 036746 210 SIPDTFGGLKNLVNLSLVV-NNLSGTIP-PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITG 277 (281)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~-n~l~~~~p-~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~ 277 (281)
.+|.......+|+++++.+ |.++ .+| ..+..+++|+.||+++|+|+ .+|... +.+|+.|.+.+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~ 232 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARS 232 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTT
T ss_pred CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhcc
Confidence 5555555667888898875 5565 555 46788899999999999988 677644 44566665544
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=2.3e-20 Score=156.19 Aligned_cols=171 Identities=24% Similarity=0.328 Sum_probs=133.4
Q ss_pred ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (281)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ + +.+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 3467788888888888873 33 47788888889998888884 444 7888888899988888874 3 3488888888
Q ss_pred EEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746 175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254 (281)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 254 (281)
+|++++|.+.+ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 99888888864 3 4577888888899988888743 567788888889998888885433 7788888889998888
Q ss_pred ccccCChhhhhCCCCCCEEeccCccC
Q 036746 255 IEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 255 i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++ .++. + ..+++|+.|++++|++
T Consensus 190 i~-~l~~-l-~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 IS-DLRA-L-AGLKNLDVLELFSQEC 212 (291)
T ss_dssp CC-BCGG-G-TTCTTCSEEEEEEEEE
T ss_pred CC-CChh-h-ccCCCCCEEECcCCcc
Confidence 88 4543 4 3788888888888875
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=4.1e-23 Score=178.18 Aligned_cols=206 Identities=19% Similarity=0.201 Sum_probs=156.2
Q ss_pred cEEEEEcCCCCceeecCccccCC-----CCCCEEeCCCCCCccCCchh----ccCC-CCCCEEEccCccCcccCCCC---
Q 036746 76 RVTILDLQNLKLVGTLSPHIGNL-----SFLQKLDLRNNSFTNAIPPQ----IGHL-RRLQILYLQINSFDGEIPAS--- 142 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~--- 142 (281)
+++.|++++|.+.+..+..+..+ ++|++|++++|.+.+..+.. +..+ ++|++|++++|.+++..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 89999999999987767666664 99999999999998766654 4445 89999999999998544433
Q ss_pred -CCC-CCCCcEEEccCCCCCCCCC----cccCCCC-CCcEEeccccccccCCCcc----cCCC-CCCCEEEcccCcCccc
Q 036746 143 -TSN-CSNLLVVSLALNHLVGKIP----SEFGSLS-KLQFLSTTANNLIGNIPSS----LGNL-SSLRGLSLSRNGFYGS 210 (281)
Q Consensus 143 -~~~-l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~ 210 (281)
+.. .++|++|++++|.+....+ ..+..++ +|++|++++|.+.+..+.. +... ++|++|++++|.+.+.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 334 3699999999999985433 3345555 8999999999998665543 3444 5999999999999853
Q ss_pred ----CCccCCC-CCCCCEEEcccCccccccC----hhccCCCCCcEEEcccCcccccCChh------hhhCCCCCCEEec
Q 036746 211 ----IPDTFGG-LKNLVNLSLVVNNLSGTIP----PSIFNISSIQTFDVGSTYIEGEMPLD------LGTTLPNLRIFSI 275 (281)
Q Consensus 211 ----~p~~~~~-l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~i~~~~p~~------~~~~~~~L~~L~l 275 (281)
++..+.. .++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+.. .+..+++|+.||+
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 4555555 4699999999999986443 34567799999999999955322221 1236778999999
Q ss_pred cCccCC
Q 036746 276 TGNQFT 281 (281)
Q Consensus 276 ~~N~lt 281 (281)
++|++.
T Consensus 292 ~~N~l~ 297 (362)
T 3goz_A 292 NGKEIH 297 (362)
T ss_dssp TSCBCC
T ss_pred CCCcCC
Confidence 999874
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.85 E-value=8.1e-21 Score=149.91 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=84.9
Q ss_pred CCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEE
Q 036746 122 LRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLS 201 (281)
Q Consensus 122 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 201 (281)
+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++.+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344455555555444 333 3444555555555555332 123455556666666666665554555566666666666
Q ss_pred cccCcCcccCCccCCCCCCCCEEEcccCc-cccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNN-LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 202 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+. .+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~-~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIE-DFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGG-GCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhc-cCCCCCEEEeeCccc
Confidence 66666665555566666666666666665 43 343 45666677777777776663 33 333 566777777777665
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.7e-21 Score=164.05 Aligned_cols=198 Identities=18% Similarity=0.141 Sum_probs=146.0
Q ss_pred EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC-CCCCCCCCcE-EEccC
Q 036746 79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA-STSNCSNLLV-VSLAL 156 (281)
Q Consensus 79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~-L~l~~ 156 (281)
.++.++++++ .+|..+. +++++|+|++|.++...+..|.++++|++|++++|.+.+.+|. .|.+++++++ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4667777776 5666552 6788899999888855556788888999999998887655554 5678888775 45667
Q ss_pred CCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEccc-CcCcccCCccCCCC-CCCCEEEcccCccccc
Q 036746 157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSR-NGFYGSIPDTFGGL-KNLVNLSLVVNNLSGT 234 (281)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l-~~L~~L~l~~n~l~~~ 234 (281)
|++....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence 888866677888888999999988888755555555666777888866 45553444556555 45788889888887 5
Q ss_pred cChhccCCCCCcEEEccc-CcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 235 IPPSIFNISSIQTFDVGS-TYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~-n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+|.......+++.+++.+ |.++ .+|.+.+..+++|++||+++|+|+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 566555667888888875 4555 788877778888999999988875
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.7e-20 Score=161.67 Aligned_cols=174 Identities=21% Similarity=0.252 Sum_probs=110.3
Q ss_pred CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCC-CCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746 102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTS-NCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (281)
+.++++++.+. .+|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46666666666 355443 23566777777777654445555 667777777777777655555667777777777777
Q ss_pred cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChh-c---cCCCCCcEEEcccCccc
Q 036746 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPS-I---FNISSIQTFDVGSTYIE 256 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l---~~l~~L~~L~l~~n~i~ 256 (281)
|.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|.. + ..+++|+.|++++|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77665555556667777777777777765566667777777777777777763 3333 3 35667777777777776
Q ss_pred ccCChhhhhCCCC--CCEEeccCccC
Q 036746 257 GEMPLDLGTTLPN--LRIFSITGNQF 280 (281)
Q Consensus 257 ~~~p~~~~~~~~~--L~~L~l~~N~l 280 (281)
.+|...+..++. ++.|++++|++
T Consensus 177 -~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 -KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -ccCHHHhhhccHhhcceEEecCCCc
Confidence 455444435555 36677777765
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=8.2e-20 Score=167.28 Aligned_cols=183 Identities=24% Similarity=0.289 Sum_probs=111.2
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+. .+|. .+++|++|++++|.+.+ +|. .+++|++|++++|.++ .+|.. +++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEEC
Confidence 45666666666654 2333 44555666666555552 222 3344555555555444 23332 245555555
Q ss_pred cCCCCCCCCCcc---cC--------------CCCCCcEEeccccccccCCCcccC-----------------CCCCCCEE
Q 036746 155 ALNHLVGKIPSE---FG--------------SLSKLQFLSTTANNLIGNIPSSLG-----------------NLSSLRGL 200 (281)
Q Consensus 155 ~~n~~~~~~~~~---l~--------------~l~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L 200 (281)
++|.+.+ +|.. +. .+++|+.|++++|.+.+ +|..+. .+++|++|
T Consensus 149 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L 226 (622)
T 3g06_A 149 SDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKEL 226 (622)
T ss_dssp CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence 5555542 2221 11 12556666666666553 222111 12567777
Q ss_pred EcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 201 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++++|.++ .+| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+|+ .+|..+. .+++|+.|++++|++
T Consensus 227 ~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~-~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 227 IVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPL 296 (622)
T ss_dssp ECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG-GSCTTCEEECCSCCC
T ss_pred EccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh-hccccCEEEecCCCC
Confidence 77777776 355 44578888888888887 5565 5678999999999999 8888776 799999999999987
Q ss_pred C
Q 036746 281 T 281 (281)
Q Consensus 281 t 281 (281)
+
T Consensus 297 ~ 297 (622)
T 3g06_A 297 S 297 (622)
T ss_dssp C
T ss_pred C
Confidence 5
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=2e-20 Score=171.08 Aligned_cols=170 Identities=24% Similarity=0.340 Sum_probs=145.2
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
+.+++.|+++++.+.. ++ .+..+++|+.|+|++|.+.+. +. +..+++|+.|++++|.+. .+| .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEE
Confidence 4678899999999864 33 588999999999999999854 33 889999999999999998 344 788999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+.. + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.+++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 99999985 3 5688899999999999998754 568899999999999999986655 8889999999999999985
Q ss_pred ccChhccCCCCCcEEEcccCcccc
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
+ +.+..+++|+.|+|++|++.+
T Consensus 190 -l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 -L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -C-GGGTTCTTCSEEECCSEEEEC
T ss_pred -C-hHHccCCCCCEEEccCCcCcC
Confidence 4 468899999999999999884
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=7.6e-21 Score=150.07 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=95.9
Q ss_pred cCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcE
Q 036746 96 GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQF 175 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 175 (281)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455666666666555 334 4556666666666666443 2235556666666666666666555566666666777
Q ss_pred EeccccccccCCCcccCCCCCCCEEEcccCc-CcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746 176 LSTTANNLIGNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254 (281)
Q Consensus 176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 254 (281)
|++++|.+.+..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 7777766665555666677777777777776 43 444 56677777777777777764 33 56677778888888877
Q ss_pred cc
Q 036746 255 IE 256 (281)
Q Consensus 255 i~ 256 (281)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 104
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=3.1e-20 Score=170.07 Aligned_cols=179 Identities=26% Similarity=0.309 Sum_probs=103.0
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+. .+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEEC
Confidence 46667777777665 3444 4567777777777766 3444 5667777777777776 4444 4567777777
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCccc---CCC--------------CCCCEEEcccCcCcccCCccCCC
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL---GNL--------------SSLRGLSLSRNGFYGSIPDTFGG 217 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l--------------~~L~~L~l~~n~~~~~~p~~~~~ 217 (281)
++|.++ .+|.. +++|++|++++|.+.+ +|..+ ..+ ++|++|++++|.+++ +|..+.+
T Consensus 129 ~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~ 202 (622)
T 3g06_A 129 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSE 202 (622)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTT
T ss_pred CCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccch
Confidence 777776 34443 3778888888887764 33222 222 566777777776663 3322211
Q ss_pred -----------------CCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746 218 -----------------LKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 218 -----------------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+++|+.|++++|.+++ +| ..+++|+.|++++|.|+ .+|. .+++|+.|++++|+|
T Consensus 203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQL 273 (622)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCC
T ss_pred hhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCC
Confidence 1344445555554442 33 23345555555555555 3443 345566666666655
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=4.5e-20 Score=168.72 Aligned_cols=170 Identities=24% Similarity=0.334 Sum_probs=101.4
Q ss_pred cCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcE
Q 036746 96 GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQF 175 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 175 (281)
..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+ ++. +..+++|+.|++++|.+.+ + +.+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 45566666666666665 233 35666666666666666663 222 5666666666666666653 2 25666666666
Q ss_pred EeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746 176 LSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI 255 (281)
Q Consensus 176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i 255 (281)
|++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.|
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 6666666653 2 3455666666666666666533 355566666666666666664333 56666666666666666
Q ss_pred cccCChhhhhCCCCCCEEeccCccC
Q 036746 256 EGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 256 ~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++ +| .+. .+++|+.|++++|++
T Consensus 188 ~~-l~-~l~-~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 188 SD-LR-ALA-GLKNLDVLELFSQEC 209 (605)
T ss_dssp CB-CG-GGT-TCTTCSEEECCSEEE
T ss_pred CC-Ch-HHc-cCCCCCEEEccCCcC
Confidence 63 32 232 566666666666654
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.83 E-value=6.5e-22 Score=184.80 Aligned_cols=223 Identities=19% Similarity=0.131 Sum_probs=119.0
Q ss_pred CCHhHHHHHHHHHhhcccCCCCCCCCCCC-CCCCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeC--
Q 036746 30 GNETDRAALLEFKSKITNDALGVLGSWND-SIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDL-- 106 (281)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l-- 106 (281)
..+.++++++++.....+..+.....|.. ......|.+..+.. ++++.+++.++.+.. .+..+.....|..+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccC
Confidence 34566788999988876666666666743 33456687766654 678888888777654 3333322222333222
Q ss_pred ---CCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccc
Q 036746 107 ---RNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL 183 (281)
Q Consensus 107 ---~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 183 (281)
..|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 223333 34666778888888888888887 77777778888888888888888 7788888888888888888888
Q ss_pred ccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCC-CcEEEcccCcccccCC
Q 036746 184 IGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISS-IQTFDVGSTYIEGEMP 260 (281)
Q Consensus 184 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~l~~n~i~~~~p 260 (281)
. .+|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++.+|..+..... ...+++++|.+++.+|
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 7 67888888888888888888886 77777888888888888888888777666543211 1224455555554444
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=5.6e-19 Score=156.64 Aligned_cols=160 Identities=23% Similarity=0.371 Sum_probs=100.6
Q ss_pred CCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEec
Q 036746 99 SFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLST 178 (281)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 178 (281)
++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+ ++|++|++++|.+.+ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 456666666666663 44 3666666666666666666 344432 366666666666664 44 4666777777777
Q ss_pred cccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccccc
Q 036746 179 TANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGE 258 (281)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~ 258 (281)
++|.+.+ +|... ++|++|++++|.+. .+| .++.+++|++|++++|++++ +|.. +++|+.|++++|.+++
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD- 271 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-
Confidence 7776653 33322 36777777777776 556 36777777777777777763 4432 3577777777777773
Q ss_pred CChhhhhCCCCCCEEeccCccCC
Q 036746 259 MPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 259 ~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+|. .+++|+.|++++|+++
T Consensus 272 l~~----~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 272 LPE----LPQSLTFLDVSENIFS 290 (454)
T ss_dssp CCC----CCTTCCEEECCSSCCS
T ss_pred cCc----ccCcCCEEECcCCccC
Confidence 553 2466777777777653
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=5.9e-19 Score=156.51 Aligned_cols=140 Identities=26% Similarity=0.316 Sum_probs=98.9
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+.+ +| .++.+++|++|++++|.+.+ +|.. ..+|++|++++|.+++ +| .+.++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 578899999998875 66 59999999999999999884 5543 3589999999998884 56 5888888888888
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
++|.+.+ +|... ++|++|++++|.+. .+|. +..+++|++|++++|.+++ +|.. .++|+.|++++|.++
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 8888774 34322 46777777777666 4553 6666777777777776663 3332 234444444444444
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=2.7e-22 Score=178.18 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=105.2
Q ss_pred CCCEEeCCCCCCccC----CchhccCCCCCCEEEccCccCcccC-----CCCCCCCCCCcEEEccCCCCCCC----CCcc
Q 036746 100 FLQKLDLRNNSFTNA----IPPQIGHLRRLQILYLQINSFDGEI-----PASTSNCSNLLVVSLALNHLVGK----IPSE 166 (281)
Q Consensus 100 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~ 166 (281)
+|++|++++|.+.+. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 444444444444321 2333444555555555555554211 11122455666666666665532 3444
Q ss_pred cCCCCCCcEEeccccccccCCCcccC-----CCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccccCh
Q 036746 167 FGSLSKLQFLSTTANNLIGNIPSSLG-----NLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPP 237 (281)
Q Consensus 167 l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (281)
+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 55566666777666665432222221 224677777777776644 345556667888888888887755444
Q ss_pred hccC-----CCCCcEEEcccCcccc----cCChhhhhCCCCCCEEeccCccCC
Q 036746 238 SIFN-----ISSIQTFDVGSTYIEG----EMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 238 ~l~~-----l~~L~~L~l~~n~i~~----~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+.. .++|++|++++|.+++ .+|..+. .+++|++|++++|+++
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH-hCCCccEEECCCCCCC
Confidence 4432 5688888888888875 5565555 5788888888888774
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2.6e-19 Score=162.25 Aligned_cols=165 Identities=22% Similarity=0.303 Sum_probs=142.6
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
++++.|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|++|++++|.+++ +|. .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 67999999999997 666 457999999999999996 666 655 99999999999995 777 6899999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCC-------CEEEcc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL-------VNLSLV 227 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L-------~~L~l~ 227 (281)
++|.+++ +|. .+++|++|++++|.+.+ +|. +. ++|++|++++|.++ .+|. +.. +| +.|+++
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 9999995 665 57899999999999985 776 65 89999999999998 7776 554 77 999999
Q ss_pred cCccccccChhccCCCCCcEEEcccCcccccCChhhh
Q 036746 228 VNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264 (281)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~ 264 (281)
+|.++ .+|..+..+++|+.|++++|++++.+|..+.
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 99998 6898888899999999999999998887765
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=2.4e-20 Score=153.86 Aligned_cols=169 Identities=21% Similarity=0.211 Sum_probs=137.1
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.+++.+++.++.+.+.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 45566778888876443 5778899999999999887 455 68889999999999999984 444 889999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
++|.+.+ +|.. .. ++|+.|++++|.+.+ + ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 9999984 4433 33 889999999998875 3 358889999999999999984 44 678899999999999999855
Q ss_pred cChhccCCCCCcEEEcccCccccc
Q 036746 235 IPPSIFNISSIQTFDVGSTYIEGE 258 (281)
Q Consensus 235 ~p~~l~~l~~L~~L~l~~n~i~~~ 258 (281)
..+..+++|+.|++++|++.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6788899999999999998843
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.2e-21 Score=174.15 Aligned_cols=208 Identities=14% Similarity=0.084 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCCceeecCccc-----cCCCCCCEEeCCCCCCccC----CchhccCCCCCCEEEccCccCcccCCCCCC
Q 036746 74 YQRVTILDLQNLKLVGTLSPHI-----GNLSFLQKLDLRNNSFTNA----IPPQIGHLRRLQILYLQINSFDGEIPASTS 144 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 144 (281)
.++++.|++++|.+.+..+..+ ...++|++|++++|.+.+. ++..+..+++|++|++++|.+....+..+.
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 191 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence 3566667776666553322222 1234566666666665542 233344455666666666655432221111
Q ss_pred -----CCCCCcEEEccCCCCCCC----CCcccCCCC-----------------------------CCcEEeccccccccC
Q 036746 145 -----NCSNLLVVSLALNHLVGK----IPSEFGSLS-----------------------------KLQFLSTTANNLIGN 186 (281)
Q Consensus 145 -----~l~~L~~L~l~~n~~~~~----~~~~l~~l~-----------------------------~L~~L~l~~n~~~~~ 186 (281)
..++|++|++++|.++.. ++..+..++ +|++|++++|.+...
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence 133455555555544432 233333444 455555554444322
Q ss_pred ----CCcccCCCCCCCEEEcccCcCcccCCccCC-----CCCCCCEEEcccCccccc----cChhccCCCCCcEEEcccC
Q 036746 187 ----IPSSLGNLSSLRGLSLSRNGFYGSIPDTFG-----GLKNLVNLSLVVNNLSGT----IPPSIFNISSIQTFDVGST 253 (281)
Q Consensus 187 ----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n 253 (281)
++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 233344445555555555555432222111 124566666666666543 3445556677777777777
Q ss_pred cccccCChhhhh----CCCCCCEEeccCccCC
Q 036746 254 YIEGEMPLDLGT----TLPNLRIFSITGNQFT 281 (281)
Q Consensus 254 ~i~~~~p~~~~~----~~~~L~~L~l~~N~lt 281 (281)
.+++..+..+.. ..++|++|++++|+++
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 776544443332 2567777777777764
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=5.6e-19 Score=145.64 Aligned_cols=148 Identities=22% Similarity=0.269 Sum_probs=126.6
Q ss_pred CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746 74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 153 (281)
..+++.|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++ .+|... . ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEE
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEE
Confidence 378999999999986 445 68899999999999999985 444 889999999999999998 455433 3 9999999
Q ss_pred ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
+++|.+++ + +.+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 113 L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 113 LDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 99999985 3 4689999999999999999854 3 688899999999999999865 678899999999999999985
Q ss_pred c
Q 036746 234 T 234 (281)
Q Consensus 234 ~ 234 (281)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.3e-21 Score=177.78 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=107.6
Q ss_pred CCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746 148 NLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 227 (281)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.+. .+|..++.+++|++|++++|.+++ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999985 676 899999999999999998 789999999999999999999995 77 88999999999999
Q ss_pred cCcccccc-ChhccCCCCCcEEEcccCcccccCCh--hhhhCCCCCCEEec
Q 036746 228 VNNLSGTI-PPSIFNISSIQTFDVGSTYIEGEMPL--DLGTTLPNLRIFSI 275 (281)
Q Consensus 228 ~n~l~~~~-p~~l~~l~~L~~L~l~~n~i~~~~p~--~~~~~~~~L~~L~l 275 (281)
+|.+++.. |..+..+++|+.|++++|++++..|. .+...+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999765 89999999999999999999965442 23446899999975
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=8e-18 Score=132.13 Aligned_cols=132 Identities=23% Similarity=0.267 Sum_probs=114.3
Q ss_pred CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC-CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746 102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA-STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (281)
++++++++.+. .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999986 6776554 3899999999999855443 388999999999999999988888999999999999999
Q ss_pred cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC
Q 036746 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (281)
|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.++...+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99988777788899999999999999998889999999999999999999886543
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=3.2e-18 Score=131.44 Aligned_cols=137 Identities=22% Similarity=0.201 Sum_probs=88.7
Q ss_pred CCCCCEEEccCccCc-ccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEE
Q 036746 122 LRRLQILYLQINSFD-GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGL 200 (281)
Q Consensus 122 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 200 (281)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356666666666665 45666666666667777766666643 556666777777777777665556555556777777
Q ss_pred EcccCcCcccC-CccCCCCCCCCEEEcccCccccccC---hhccCCCCCcEEEcccCcccccCCh
Q 036746 201 SLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLSGTIP---PSIFNISSIQTFDVGSTYIEGEMPL 261 (281)
Q Consensus 201 ~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~i~~~~p~ 261 (281)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+. ++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 77777776321 2566677777777777777764333 36667777777777777766 4443
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=2.9e-18 Score=134.63 Aligned_cols=132 Identities=24% Similarity=0.271 Sum_probs=116.4
Q ss_pred EEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCch-hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746 78 TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPP-QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL 156 (281)
Q Consensus 78 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 156 (281)
+.++++++++. .+|..+. .++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46788888884 6776664 3899999999999865554 488999999999999999988889999999999999999
Q ss_pred CCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC
Q 036746 157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP 212 (281)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 212 (281)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998878889999999999999999998889999999999999999999986543
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.6e-19 Score=168.65 Aligned_cols=154 Identities=25% Similarity=0.291 Sum_probs=119.9
Q ss_pred ecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCC
Q 036746 90 TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGS 169 (281)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 169 (281)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 45677889999999999999998 67777779999999999999999 89999999999999999999999 78999999
Q ss_pred CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCC-CCEEEcccCccccccChhccCCCCCcEE
Q 036746 170 LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN-LVNLSLVVNNLSGTIPPSIFNISSIQTF 248 (281)
Q Consensus 170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~l~~l~~L~~L 248 (281)
+++|++|++++|.+. .+|..+..+++|++|+|++|.+++.+|..+..... ...+++++|.+++.+|.. |+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 999999999999887 78888999999999999999999888877654321 223678888888777653 4455
Q ss_pred EcccC
Q 036746 249 DVGST 253 (281)
Q Consensus 249 ~l~~n 253 (281)
+++.|
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 55555
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=5.1e-18 Score=130.29 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=117.2
Q ss_pred CCCCCcEEEccCCCCC-CCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCE
Q 036746 145 NCSNLLVVSLALNHLV-GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223 (281)
Q Consensus 145 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 223 (281)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3488999999999998 77888889999999999999998754 77889999999999999999778888888999999
Q ss_pred EEcccCcccccc-ChhccCCCCCcEEEcccCcccccCCh---hhhhCCCCCCEEeccCccCC
Q 036746 224 LSLVVNNLSGTI-PPSIFNISSIQTFDVGSTYIEGEMPL---DLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 224 L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~i~~~~p~---~~~~~~~~L~~L~l~~N~lt 281 (281)
|++++|.+++.. +..+..+++|+.|++++|.+++ +|. ..+..+++|++|++++|.++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999998532 2788899999999999999994 554 45558999999999999863
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.3e-17 Score=128.70 Aligned_cols=128 Identities=22% Similarity=0.301 Sum_probs=107.7
Q ss_pred CEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccC
Q 036746 126 QILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRN 205 (281)
Q Consensus 126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 205 (281)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57889998888 7777654 68999999999988 67788888999999999999988777777888899999999999
Q ss_pred cCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc
Q 036746 206 GFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 206 ~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
.+++..|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9987777788888999999999999885555567888899999999988764
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=8.4e-18 Score=126.46 Aligned_cols=129 Identities=21% Similarity=0.232 Sum_probs=75.9
Q ss_pred CCCcEEEccCCCCC-CCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEE
Q 036746 147 SNLLVVSLALNHLV-GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLS 225 (281)
Q Consensus 147 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 225 (281)
+++++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 33444444444444 34444444455555555555554432 3455566666666666666654565555667777777
Q ss_pred cccCccccc-cChhccCCCCCcEEEcccCcccccCC--hhhhhCCCCCCEEeccC
Q 036746 226 LVVNNLSGT-IPPSIFNISSIQTFDVGSTYIEGEMP--LDLGTTLPNLRIFSITG 277 (281)
Q Consensus 226 l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~i~~~~p--~~~~~~~~~L~~L~l~~ 277 (281)
+++|.+++. .+..+..+++|++|++++|.+++..+ ...+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777642 23667777778888888887774333 13444678888887763
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=4e-21 Score=174.55 Aligned_cols=178 Identities=18% Similarity=0.181 Sum_probs=146.5
Q ss_pred cCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCcc-------------CcccCCCCCCCCCCCcEEE-ccCCCCCC
Q 036746 96 GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS-------------FDGEIPASTSNCSNLLVVS-LALNHLVG 161 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~ 161 (281)
...++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56789999999999997 789999999999999998775 4455666777778888887 4544322
Q ss_pred CCCc------ccCC--CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 162 KIPS------EFGS--LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 162 ~~~~------~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
.++. .+.. ...|+.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1110 0111 1359999999999985 676 999999999999999999 889999999999999999999995
Q ss_pred ccChhccCCCCCcEEEcccCcccccC-ChhhhhCCCCCCEEeccCccCC
Q 036746 234 TIPPSIFNISSIQTFDVGSTYIEGEM-PLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~p~~l~~l~~L~~L~l~~n~i~~~~-p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+| .+..+++|+.|++++|.+++.. |..+. .+++|+.|++++|+|+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLC 546 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGG
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCC
Confidence 67 8999999999999999999665 77776 7999999999999874
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1e-17 Score=125.93 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=92.0
Q ss_pred CCCCEEEccCccCc-ccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEE
Q 036746 123 RRLQILYLQINSFD-GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLS 201 (281)
Q Consensus 123 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 201 (281)
++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55667777777666 56666666777777777777776644 5667777777777777777755666666677888888
Q ss_pred cccCcCccc-CCccCCCCCCCCEEEcccCccccccC---hhccCCCCCcEEEccc
Q 036746 202 LSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLSGTIP---PSIFNISSIQTFDVGS 252 (281)
Q Consensus 202 l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~ 252 (281)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888887753 34677788888888888888875544 4677888888888753
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.2e-16 Score=123.62 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=110.4
Q ss_pred CCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcc
Q 036746 124 RLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLS 203 (281)
Q Consensus 124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (281)
+.+.++++++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3578889998888 6676543 789999999999986666677889999999999999886656667889999999999
Q ss_pred cCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCC
Q 036746 204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP 260 (281)
Q Consensus 204 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p 260 (281)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999986666778889999999999999985555556788999999999999886554
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=124.99 Aligned_cols=127 Identities=28% Similarity=0.348 Sum_probs=114.8
Q ss_pred CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc
Q 036746 102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN 181 (281)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 181 (281)
+.++++++.+. .+|..+ .+++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 68999999988 567655 368999999999998 88899999999999999999999877788999999999999999
Q ss_pred ccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746 182 NLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
.+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999877788999999999999999999666667899999999999999885
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=2.1e-16 Score=122.30 Aligned_cols=133 Identities=21% Similarity=0.240 Sum_probs=113.5
Q ss_pred CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (281)
.+.++++++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 478999999888 456544 47999999999999965556678999999999999999966666789999999999999
Q ss_pred cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC
Q 036746 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (281)
|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99987666678899999999999999996556667889999999999999986544
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.1e-16 Score=123.72 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=92.9
Q ss_pred hccCCCCCCEEEccCccCcccCCCCCCCC-CCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCC
Q 036746 118 QIGHLRRLQILYLQINSFDGEIPASTSNC-SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196 (281)
Q Consensus 118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 196 (281)
.+..+++|+.|++++|.++ .+|. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3556778888888888887 4444 4444 3888888888887743 56777777888888887776443343467777
Q ss_pred CCEEEcccCcCcccCCc--cCCCCCCCCEEEcccCccccccChh----ccCCCCCcEEEcccCccc
Q 036746 197 LRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGTIPPS----IFNISSIQTFDVGSTYIE 256 (281)
Q Consensus 197 L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~i~ 256 (281)
|++|++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777887777775 4554 6667777777777777776 44553 667777777777777665
No 128
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=9e-19 Score=160.20 Aligned_cols=206 Identities=16% Similarity=0.116 Sum_probs=118.5
Q ss_pred cEEEEEcCCCCceeecC-ccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC-----------ccCccc-CCCC
Q 036746 76 RVTILDLQNLKLVGTLS-PHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI-----------NSFDGE-IPAS 142 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~ 142 (281)
+++.|++++|.+.+... ..+..+++|++|+++++...+.++..+..+++|++|++++ +.+++. ++..
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 45555555554432221 2234445555555552211111222223455566666652 333321 1111
Q ss_pred CCCCCCCcEEEccCCCCCCCCCcccCC-CCCCcEEecc----ccccccC-----CCcccCCCCCCCEEEcccCc--Cccc
Q 036746 143 TSNCSNLLVVSLALNHLVGKIPSEFGS-LSKLQFLSTT----ANNLIGN-----IPSSLGNLSSLRGLSLSRNG--FYGS 210 (281)
Q Consensus 143 ~~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--~~~~ 210 (281)
...+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 233566777777666665444444443 6777777775 3444432 11224457788888886433 5544
Q ss_pred CCccCC-CCCCCCEEEcccCcccc-ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 211 IPDTFG-GLKNLVNLSLVVNNLSG-TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 211 ~p~~~~-~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+..+. .+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++.....+...+++|++|++++|++|
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 333333 37889999999998876 345556788999999999999876655555557899999999999875
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=2.4e-17 Score=150.72 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=14.8
Q ss_pred CCCCcEEEcccCcccccCChhhhhCCCCCCEEec
Q 036746 242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSI 275 (281)
Q Consensus 242 l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l 275 (281)
+++|++|++..|.+++..+..+...+++|+.|++
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence 4444444444444444333333333444444444
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.5e-15 Score=129.05 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=136.7
Q ss_pred CcEEEEEcCCCCce--------------------eecCccccC--------CCCCCEEeCCCCCCccCCchhccCCCCCC
Q 036746 75 QRVTILDLQNLKLV--------------------GTLSPHIGN--------LSFLQKLDLRNNSFTNAIPPQIGHLRRLQ 126 (281)
Q Consensus 75 ~~l~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 126 (281)
++++.||+++|.+. ...+..|.+ +++|+.+++.. .+....+.+|.+|++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 67888888887765 112234556 78888888887 67655666788888888
Q ss_pred EEEccCccCcccCCCCCCCCCCCcEEEccCCCC----CCCCCccc-----------------------------------
Q 036746 127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHL----VGKIPSEF----------------------------------- 167 (281)
Q Consensus 127 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~l----------------------------------- 167 (281)
.+++++|.+....+..|..+.++..+....+.. .......|
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 888888887755556677766666665444110 00000000
Q ss_pred ---------------CCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCC-EEEcccCcc
Q 036746 168 ---------------GSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV-NLSLVVNNL 231 (281)
Q Consensus 168 ---------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~-~L~l~~n~l 231 (281)
..+++|+.+++.+|.+....+..|..+++|+.+++.+| +....+.+|.++++|+ .+++.. .+
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 02678888888888777555567888888888888887 6645567788888888 888877 66
Q ss_pred ccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEec
Q 036746 232 SGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSI 275 (281)
Q Consensus 232 ~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l 275 (281)
+...+.+|.++++|+.++++.|.++ .++...|.++++|+.+..
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred eEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 6555678888888888888888887 677766778888888753
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=2.7e-16 Score=121.60 Aligned_cols=133 Identities=19% Similarity=0.115 Sum_probs=68.4
Q ss_pred ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 174 (281)
+....+|++|++++|.+. .++......++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 334455556666665555 2333222223566666666655532 4455555666666666655533222235555566
Q ss_pred EEeccccccccCCCc--ccCCCCCCCEEEcccCcCcccCCcc----CCCCCCCCEEEcccCccc
Q 036746 175 FLSTTANNLIGNIPS--SLGNLSSLRGLSLSRNGFYGSIPDT----FGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 175 ~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l~ 232 (281)
+|++++|.+. .+|. .+..+++|++|++++|.+. .+|.. +..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666655553 3333 4555555666666666555 33432 455555666665555543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.64 E-value=6.9e-19 Score=138.91 Aligned_cols=135 Identities=24% Similarity=0.275 Sum_probs=77.0
Q ss_pred ccCCCCCCEEeCCCCCCccCCch------hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccC
Q 036746 95 IGNLSFLQKLDLRNNSFTNAIPP------QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFG 168 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 168 (281)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34445566666666666555444 66677777777777777763 55 5666666666666666666 4555555
Q ss_pred CCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC-ccCCCCCCCCEEEcccCccccc
Q 036746 169 SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 169 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~ 234 (281)
.+++|++|++++|.+.+ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 55566666666665553 22 34455555555555555552211 2444555555555555555433
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=1.6e-18 Score=136.75 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=106.0
Q ss_pred ccCCCCCCEEEccCccCcccCCC------CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccC
Q 036746 119 IGHLRRLQILYLQINSFDGEIPA------STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG 192 (281)
Q Consensus 119 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 192 (281)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666667777776666655 67777788888888887774 55 6777778888888887776 5666566
Q ss_pred CCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC-hhccCCCCCcEEEcccCcccccCCh---------h
Q 036746 193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP-PSIFNISSIQTFDVGSTYIEGEMPL---------D 262 (281)
Q Consensus 193 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~i~~~~p~---------~ 262 (281)
.+++|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+.+|. .
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 66778888888887774 44 46667778888888887764221 3567777888888888877655443 1
Q ss_pred hhhCCCCCCEEeccCccC
Q 036746 263 LGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 263 ~~~~~~~L~~L~l~~N~l 280 (281)
++..+++|+.|| +|++
T Consensus 169 ~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHHHCSSCSEEC--CGGG
T ss_pred HHHhCCCcEEEC--Cccc
Confidence 234677888776 5544
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=1.1e-14 Score=111.87 Aligned_cols=108 Identities=20% Similarity=0.179 Sum_probs=91.2
Q ss_pred CCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746 148 NLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 227 (281)
..+.+++++|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+.++++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999988 5676553 789999999999987778888999999999999999986666778899999999999
Q ss_pred cCccccccChhccCCCCCcEEEcccCccccc
Q 036746 228 VNNLSGTIPPSIFNISSIQTFDVGSTYIEGE 258 (281)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~ 258 (281)
+|++++..+..+..+++|+.|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999866566788899999999999988743
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=8.5e-15 Score=124.43 Aligned_cols=202 Identities=17% Similarity=0.182 Sum_probs=150.2
Q ss_pred CcEEEEEcCCCCceeecCccccC-CCCCCEEeCCCCCCc--------------------cCCchhccC--------CCCC
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGN-LSFLQKLDLRNNSFT--------------------NAIPPQIGH--------LRRL 125 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~-l~~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L 125 (281)
.+++.|.++++ +...-...+.. +++|+.|+|++|.+. ...+..|.+ +++|
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 45677776643 11111112333 788999999999887 123346677 9999
Q ss_pred CEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccc----ccCCCccc----------
Q 036746 126 QILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL----IGNIPSSL---------- 191 (281)
Q Consensus 126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l---------- 191 (281)
+.+++.+ .++..-+..|.++++|+.+++.+|.+....+..|..+.++..+....+.. .......+
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 9999999 88755566899999999999999998866677888888777777654211 00000000
Q ss_pred ----------------------------------------CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcc
Q 036746 192 ----------------------------------------GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231 (281)
Q Consensus 192 ----------------------------------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 231 (281)
..+++|+.+++.+|.++...+..|.++++|+++++.+| +
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence 02679999999999998666678999999999999998 7
Q ss_pred ccccChhccCCCCCc-EEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 232 SGTIPPSIFNISSIQ-TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 232 ~~~~p~~l~~l~~L~-~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
+...+.+|.++++|+ .+++.+ .++ .++...|.+|++|+.+++++|+++
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCC
T ss_pred ceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccC
Confidence 656677899999999 999998 677 677777779999999999988764
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=2.4e-14 Score=110.41 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=89.5
Q ss_pred CcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEccc
Q 036746 149 LLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228 (281)
Q Consensus 149 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 228 (281)
-+.+++++|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+.++++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368899999987 6777664 7899999999999877788899999999999999999865556678899999999999
Q ss_pred CccccccChhccCCCCCcEEEcccCcccc
Q 036746 229 NNLSGTIPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
|++++..+..+..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99985555568889999999999999883
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=2.4e-17 Score=150.74 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=135.9
Q ss_pred CcEEEEEcCCCCceeec-CccccCCCCCCEEeCCCCCCccC-CchhccCCCCCCEEEccC---------ccCcccCCCCC
Q 036746 75 QRVTILDLQNLKLVGTL-SPHIGNLSFLQKLDLRNNSFTNA-IPPQIGHLRRLQILYLQI---------NSFDGEIPAST 143 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~ 143 (281)
++++.|++++|.+.+.. +..+..+++|++|++++| +... ++.....+++|++|++++ +.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 67888888888765432 223457788888888877 3321 222233578888888833 33332211112
Q ss_pred -CCCCCCcEEEccCCCCCCCCCcccC-CCCCCcEEecc--c----cccccC-----CCcccCCCCCCCEEEcccCcCccc
Q 036746 144 -SNCSNLLVVSLALNHLVGKIPSEFG-SLSKLQFLSTT--A----NNLIGN-----IPSSLGNLSSLRGLSLSRNGFYGS 210 (281)
Q Consensus 144 -~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~ 210 (281)
..+++|++|.+..+.++......+. .+++|+.|+++ + +.++.. ++..+..+++|+.|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2368888888887877654444443 47889999998 3 333311 111245677899999977 56555
Q ss_pred CCccCCC-CCCCCEEEcccCccccccChhc-cCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746 211 IPDTFGG-LKNLVNLSLVVNNLSGTIPPSI-FNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 211 ~p~~~~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt 281 (281)
.+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.....+...+++|+.|++++|+++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4444444 7889999999999876555554 668999999999999876555555556899999999999863
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=1e-13 Score=106.44 Aligned_cols=105 Identities=26% Similarity=0.268 Sum_probs=62.9
Q ss_pred CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 180 (281)
.+.+++++|.+. .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356667766666 345443 25666666666666655555666666666666666666644444455666666666666
Q ss_pred cccccCCCcccCCCCCCCEEEcccCcCc
Q 036746 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (281)
|.+.+..+..+..+++|++|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665444444556666666666666554
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=1.3e-13 Score=106.24 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=94.6
Q ss_pred CCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEccc
Q 036746 125 LQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSR 204 (281)
Q Consensus 125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 204 (281)
-+.+++++|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 8888775 8999999999999988888999999999999999999865556678999999999999
Q ss_pred CcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746 205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 205 n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (281)
|.+.+..+..+..+++|+.|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99996656669999999999999999873
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=5.2e-16 Score=141.88 Aligned_cols=201 Identities=14% Similarity=0.143 Sum_probs=132.0
Q ss_pred CcEEEEEcCCCCceeecCcccc-CCCCCCEEeCCCC-CCccC-CchhccCCCCCCEEEccCccCcccCC----CCCCCCC
Q 036746 75 QRVTILDLQNLKLVGTLSPHIG-NLSFLQKLDLRNN-SFTNA-IPPQIGHLRRLQILYLQINSFDGEIP----ASTSNCS 147 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~ 147 (281)
++++.|+++++.+.+..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+ .....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 6788999998888776666564 6889999999988 44422 34444578899999999988764333 2334677
Q ss_pred CCcEEEccCCC--CCC-CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCc------------------
Q 036746 148 NLLVVSLALNH--LVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG------------------ 206 (281)
Q Consensus 148 ~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~------------------ 206 (281)
+|++|++++|. +.. .++.....+++|+.|++++|...+.++..+..+++|++|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 89999998886 211 111223446889999998873322355556666777777755442
Q ss_pred --------Cc----ccCCccCCCCCCCCEEEcccCcccccc-ChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEE
Q 036746 207 --------FY----GSIPDTFGGLKNLVNLSLVVNNLSGTI-PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIF 273 (281)
Q Consensus 207 --------~~----~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L 273 (281)
+. +.++..+..+++|++|++++|.+++.. +..+..+++|++|++++| +.+.....+...+++|++|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 11 122333335678888888888876432 233557788888888887 5544334454468888888
Q ss_pred ecc
Q 036746 274 SIT 276 (281)
Q Consensus 274 ~l~ 276 (281)
+++
T Consensus 344 ~L~ 346 (594)
T 2p1m_B 344 RVF 346 (594)
T ss_dssp EEE
T ss_pred EEe
Confidence 883
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=3.5e-12 Score=111.08 Aligned_cols=193 Identities=10% Similarity=0.073 Sum_probs=88.5
Q ss_pred EEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746 77 VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL 156 (281)
Q Consensus 77 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 156 (281)
++.+.+.. .+...-+..|.++.+|+.+++..|.+.......|. +.+|+.+.+..+ ++..-...|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44555543 33333344556666666666666555533333333 355555555532 3323334455555555555544
Q ss_pred CCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc-----ccCCccCCCCCCCCEEEcccCcc
Q 036746 157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY-----GSIPDTFGGLKNLVNLSLVVNNL 231 (281)
Q Consensus 157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~p~~~~~l~~L~~L~l~~n~l 231 (281)
+ +...-...|.. .+|+.+.+.. .+.......|..+++|+.+.+.+|.+. ...+..|.++++|+.+.+. +.+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred C-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 3 22122223333 3444444422 222222344555555555555554432 1223445555555555554 224
Q ss_pred ccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746 232 SGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 232 ~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
+..-..+|.++++|+.+++..+ ++ .+....|.++ +|+.+++++|.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred EEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 3333344555555555555333 33 3444444444 55555555543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=1.2e-15 Score=131.74 Aligned_cols=165 Identities=18% Similarity=0.152 Sum_probs=87.1
Q ss_pred CCCCEEeCCCCCCccCCchhc----c-CCCCCCEEEccCccCcccCCCCC-CCCCCCcEEEccCCCCCCCCCccc-----
Q 036746 99 SFLQKLDLRNNSFTNAIPPQI----G-HLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEF----- 167 (281)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l----- 167 (281)
++|++|++++|.+.......+ . ..++|+.|++++|.+.......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 455566666665543222221 1 12456666666666543211111 123456666666666553222222
Q ss_pred CCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc----c
Q 036746 168 GSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----I 235 (281)
Q Consensus 168 ~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~ 235 (281)
...++|++|++++|.+... ++..+...++|++|++++|.+.+. ++..+...++|++|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345666777766665431 233345566677777777776532 234455566777777777777642 2
Q ss_pred ChhccCCCCCcEEEcccCcccccCChhh
Q 036746 236 PPSIFNISSIQTFDVGSTYIEGEMPLDL 263 (281)
Q Consensus 236 p~~l~~l~~L~~L~l~~n~i~~~~p~~~ 263 (281)
+..+...++|++|++++|.|++.....+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3334455677777777777765433333
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=1.5e-15 Score=131.05 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=119.3
Q ss_pred CCCCCEEEccCccCcccCCCC----CC-CCCCCcEEEccCCCCCCCCCccc-CCCCCCcEEeccccccccCCCccc----
Q 036746 122 LRRLQILYLQINSFDGEIPAS----TS-NCSNLLVVSLALNHLVGKIPSEF-GSLSKLQFLSTTANNLIGNIPSSL---- 191 (281)
Q Consensus 122 l~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l---- 191 (281)
+++|+.|++++|.++...... +. ..++|++|++++|.+.......+ ..+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 568999999999987432222 22 33799999999999874322222 235689999999998864433333
Q ss_pred -CCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc----cChhccCCCCCcEEEcccCcccccCChh
Q 036746 192 -GNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----IPPSIFNISSIQTFDVGSTYIEGEMPLD 262 (281)
Q Consensus 192 -~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~i~~~~p~~ 262 (281)
...++|++|++++|.+++. ++..+...++|++|++++|.+++. ++..+...++|++|++++|.|++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3467899999999999743 445557789999999999999753 3556777889999999999998643333
Q ss_pred hh---hCCCCCCEEeccCccCC
Q 036746 263 LG---TTLPNLRIFSITGNQFT 281 (281)
Q Consensus 263 ~~---~~~~~L~~L~l~~N~lt 281 (281)
+. ..+++|++|++++|+|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 32 25789999999999985
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=1e-12 Score=112.24 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=82.2
Q ss_pred cEEEccCC-CCCCCCCcccCCCCCCcEEeccc-cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746 150 LVVSLALN-HLVGKIPSEFGSLSKLQFLSTTA-NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 150 ~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 227 (281)
..++++++ .++ .+|. +..+++|+.|++++ |.+.+..+..|..+++|++|+|++|.+++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 777 5777 88888888888885 88876666778888888888888888887777888888888888888
Q ss_pred cCccccccChhccCCCCCcEEEcccCcccc
Q 036746 228 VNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257 (281)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~ 257 (281)
+|++++..+..+..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888854444454444 8888888888873
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=1.3e-11 Score=107.40 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=135.4
Q ss_pred cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc
Q 036746 76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA 155 (281)
Q Consensus 76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 155 (281)
+++.+.+..+ +...-...|.+ ..|+.+.+.. .+......+|.+|++|+.+++.+|.++ .++.......+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeC
Confidence 3455555443 33333344555 3577777775 455445567888888888888888887 444433336788888887
Q ss_pred CCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc---
Q 036746 156 LNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS--- 232 (281)
Q Consensus 156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~--- 232 (281)
.+ +...-...|..+++|+.+.+..+ +.......|.. .+|+.+.+ .+.+......+|.++++|+.+.+.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 44 55455667888888998888764 33233445655 68888888 44566455678899999999999887764
Q ss_pred --cccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCc
Q 036746 233 --GTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 233 --~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
...+.+|.++++|+.+++.. .++ .++...|.+|++|+.+++..|
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc
Confidence 34567888999999999984 466 677777778999999999654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.5e-12 Score=111.16 Aligned_cols=104 Identities=23% Similarity=0.189 Sum_probs=91.7
Q ss_pred CEEEccCc-cCcccCCCCCCCCCCCcEEEccC-CCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcc
Q 036746 126 QILYLQIN-SFDGEIPASTSNCSNLLVVSLAL-NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLS 203 (281)
Q Consensus 126 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (281)
..++.+++ .++ .+|. +..+++|++|++++ |.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788887 888 7888 99999999999996 99997777889999999999999999998888889999999999999
Q ss_pred cCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746 204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 204 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (281)
+|.+++..+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999965555666565 999999999987
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.26 E-value=2.8e-12 Score=109.95 Aligned_cols=200 Identities=13% Similarity=0.167 Sum_probs=126.1
Q ss_pred CcEEEEEcCCCCcee-e-------cCccccCCCCCCEEeCCCCCCc---------cCCchhccCCCCCCEEEccCccCcc
Q 036746 75 QRVTILDLQNLKLVG-T-------LSPHIGNLSFLQKLDLRNNSFT---------NAIPPQIGHLRRLQILYLQINSFDG 137 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~ 137 (281)
.+++.|.+....+.+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 567788877665442 1 2334556789999998765331 124455677899999999887322
Q ss_pred cCCCCCCCCCCCcEEEccCCCCCCCCCccc--CCCCCCcEEeccc--cccccC-----CCccc--CCCCCCCEEEcccCc
Q 036746 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEF--GSLSKLQFLSTTA--NNLIGN-----IPSSL--GNLSSLRGLSLSRNG 206 (281)
Q Consensus 138 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~--n~~~~~-----~~~~l--~~l~~L~~L~l~~n~ 206 (281)
.++. + .+++|++|++..+.+.......+ ..+|+|+.|+++. +...+. +...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 3444 3 37899999998887753322233 3688999998853 221111 11122 246789999998888
Q ss_pred CcccCCccC---CCCCCCCEEEcccCcccccc----ChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746 207 FYGSIPDTF---GGLKNLVNLSLVVNNLSGTI----PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 207 ~~~~~p~~~---~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
+.+..+..+ ..+++|+.|+++.|.+++.. +..+..+++|+.|++++|.|++..-..+...+ ...+++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 864333222 24678999999888887642 23334568899999998888754444443212 3557777654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.18 E-value=1.8e-11 Score=104.97 Aligned_cols=180 Identities=13% Similarity=0.162 Sum_probs=120.2
Q ss_pred CCCCEEeCCCCCCcc-CC-------chhccCCCCCCEEEccCccCc---------ccCCCCCCCCCCCcEEEccCCCCCC
Q 036746 99 SFLQKLDLRNNSFTN-AI-------PPQIGHLRRLQILYLQINSFD---------GEIPASTSNCSNLLVVSLALNHLVG 161 (281)
Q Consensus 99 ~~L~~L~l~~n~l~~-~~-------~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (281)
..++.|.+......+ .. ..++..+++|+.|.+...... +.+...+..+++|+.|.+++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457788888655442 11 223456789999999764331 112233456799999999887321
Q ss_pred CCCcccCCCCCCcEEeccccccccCCCccc--CCCCCCCEEEccc--CcCccc-----CCccC--CCCCCCCEEEcccCc
Q 036746 162 KIPSEFGSLSKLQFLSTTANNLIGNIPSSL--GNLSSLRGLSLSR--NGFYGS-----IPDTF--GGLKNLVNLSLVVNN 230 (281)
Q Consensus 162 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~--n~~~~~-----~p~~~--~~l~~L~~L~l~~n~ 230 (281)
.++. + .+++|+.|++..+.+.......+ ..+++|++|+|+. |...+. +...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 3333 3 37899999999887654322333 3688999999863 221111 11222 357999999999999
Q ss_pred cccccChhcc---CCCCCcEEEcccCcccccCChhhh---hCCCCCCEEeccCccCC
Q 036746 231 LSGTIPPSIF---NISSIQTFDVGSTYIEGEMPLDLG---TTLPNLRIFSITGNQFT 281 (281)
Q Consensus 231 l~~~~p~~l~---~l~~L~~L~l~~n~i~~~~p~~~~---~~~~~L~~L~l~~N~lt 281 (281)
+.+..+..+. .+++|++|+|+.|.+.+..+..+. ..+++|+.|++++|.++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 8765444443 468999999999999875444443 24799999999999885
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=1.1e-09 Score=84.89 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=57.4
Q ss_pred CCCCCCCCcEEEccCC-CCCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc--
Q 036746 142 STSNCSNLLVVSLALN-HLVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS-- 210 (281)
Q Consensus 142 ~~~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~-- 210 (281)
.+...++|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566777777766 65521 223344455666666666655422 122233334566666666655432
Q ss_pred --CCccCCCCCCCCEEEc--ccCccccc----cChhccCCCCCcEEEcccCccc
Q 036746 211 --IPDTFGGLKNLVNLSL--VVNNLSGT----IPPSIFNISSIQTFDVGSTYIE 256 (281)
Q Consensus 211 --~p~~~~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~i~ 256 (281)
+...+...++|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334444455555555 55555432 1223333455555555555544
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.67 E-value=5.1e-07 Score=78.25 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=114.2
Q ss_pred CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCc------------------
Q 036746 75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD------------------ 136 (281)
Q Consensus 75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------ 136 (281)
.+++.+.+.++. ...-...|.++.+|+.+.+..+ +.......|.++..|+.+.+..+...
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECC
Confidence 567788886543 2233456778888888888765 33334456666777776665543321
Q ss_pred ---ccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCc
Q 036746 137 ---GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213 (281)
Q Consensus 137 ---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 213 (281)
..-...+..+..++.+.+..+... .....+..+..++.+....+.+. ...+..+.+|+.+.+..+ +......
T Consensus 240 ~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~ 314 (394)
T 4fs7_A 240 SFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEE 314 (394)
T ss_dssp TCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTT
T ss_pred CceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechh
Confidence 011123344445555555443222 22334444555555544433211 134556677777777654 4434456
Q ss_pred cCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCc
Q 036746 214 TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 214 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
+|.++++|+.+++..+ ++..-..+|.++.+|+.+++..+ ++ .+....|.+|++|+.+++..+
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 6777888888888643 55444567778888888888766 55 566666668888888887654
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=3e-11 Score=98.72 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=15.1
Q ss_pred CCCcccceEecCCCCcEEEEEc
Q 036746 61 HFCQWYGVTCSPRYQRVTILDL 82 (281)
Q Consensus 61 ~~c~~~~~~~~~~~~~l~~L~l 82 (281)
..|.|.|+.|.+...++..+..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEE
T ss_pred HHHhcCcEEECCCCCEEEEEEe
Confidence 4578889988866556655544
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=2.6e-09 Score=82.82 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=48.8
Q ss_pred cCCCCCCcEEecccc-ccccC----CCcccCCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc---
Q 036746 167 FGSLSKLQFLSTTAN-NLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT--- 234 (281)
Q Consensus 167 l~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~--- 234 (281)
+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344455555555554 44321 222333444555555555555422 122233334455555555555432
Q ss_pred -cChhccCCCCCcEEEc--ccCcccccCChhh---hhCCCCCCEEeccCcc
Q 036746 235 -IPPSIFNISSIQTFDV--GSTYIEGEMPLDL---GTTLPNLRIFSITGNQ 279 (281)
Q Consensus 235 -~p~~l~~l~~L~~L~l--~~n~i~~~~p~~~---~~~~~~L~~L~l~~N~ 279 (281)
+...+...++|++|++ ++|.|.......+ ....++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2233344445555555 4455543221111 1133455555555554
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.62 E-value=2.1e-06 Score=74.36 Aligned_cols=86 Identities=12% Similarity=0.232 Sum_probs=57.2
Q ss_pred ccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746 190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN 269 (281)
Q Consensus 190 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~ 269 (281)
.+..++.|+.+.+. +.+.......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++ .+....|.+|++
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTT
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCC
Confidence 34445555555554 2333233456777888888888654 54344567888888888888654 55 677777778888
Q ss_pred CCEEeccCcc
Q 036746 270 LRIFSITGNQ 279 (281)
Q Consensus 270 L~~L~l~~N~ 279 (281)
|+.+++.++.
T Consensus 359 L~~i~~~~~~ 368 (394)
T 4gt6_A 359 LNNIEYSGSR 368 (394)
T ss_dssp CCEEEESSCH
T ss_pred CCEEEECCce
Confidence 8888887764
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=7.1e-08 Score=78.74 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=57.5
Q ss_pred CCCCCCCEEEcccCcCcc--cCCccCCCCCCCCEEEcccCccccccChhccCCC--CCcEEEcccCcccccCCh------
Q 036746 192 GNLSSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS--SIQTFDVGSTYIEGEMPL------ 261 (281)
Q Consensus 192 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~l~~n~i~~~~p~------ 261 (281)
..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 346678888888888875 3455566788888888888888753 2233333 888888888888876652
Q ss_pred hhhhCCCCCCEEe
Q 036746 262 DLGTTLPNLRIFS 274 (281)
Q Consensus 262 ~~~~~~~~L~~L~ 274 (281)
.+...+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2445788888886
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=3.8e-06 Score=72.67 Aligned_cols=178 Identities=15% Similarity=0.050 Sum_probs=114.1
Q ss_pred CccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCC-----------
Q 036746 92 SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV----------- 160 (281)
Q Consensus 92 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~----------- 160 (281)
...|.++.+|+.+.+..+. .......|.++.+|+.+++..+ ++..-...+.++..|+.+.+..+...
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 3568889999999998654 3245567889999999999776 44344556777777776665543221
Q ss_pred ----------CCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCc
Q 036746 161 ----------GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 161 ----------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 230 (281)
......+..+..++.+.+..+... .....+..+..++.+....+.+ ....+..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-
Confidence 011122334444555544433221 2223344555555555444321 2345677888999988654
Q ss_pred cccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCc
Q 036746 231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 231 l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
++..-..++.++.+|+.+++..+ ++ .+....|.+|.+|+.+++..|
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 55455677889999999999754 55 677777778999999999765
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=9.7e-06 Score=70.11 Aligned_cols=84 Identities=11% Similarity=0.112 Sum_probs=51.7
Q ss_pred cCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCC
Q 036746 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL 270 (281)
Q Consensus 191 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L 270 (281)
|..+..|+.+.+..+... .....+.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++ .+....|.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCC
Confidence 334445555555443222 333455666677777764 3444344566778888888888764 45 5666666688888
Q ss_pred CEEeccCc
Q 036746 271 RIFSITGN 278 (281)
Q Consensus 271 ~~L~l~~N 278 (281)
+.+.+..+
T Consensus 337 ~~i~ip~s 344 (394)
T 4gt6_A 337 ERIAIPSS 344 (394)
T ss_dssp CEEEECTT
T ss_pred CEEEECcc
Confidence 88888644
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=2.1e-07 Score=70.83 Aligned_cols=109 Identities=11% Similarity=0.189 Sum_probs=69.9
Q ss_pred CCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCc-CcccCCccCCCC----CCCCEEEcccCc-cccccC
Q 036746 163 IPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGL----KNLVNLSLVVNN-LSGTIP 236 (281)
Q Consensus 163 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p 236 (281)
+|.....-.+|+.|+++++.++..--..+..+++|++|++++|. +++.--..+..+ ++|++|++++|. +++..-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433334578888888887765544556778888888888885 554433344443 368888888874 776555
Q ss_pred hhccCCCCCcEEEcccCc-cccc--CChhhhhCCCCCC
Q 036746 237 PSIFNISSIQTFDVGSTY-IEGE--MPLDLGTTLPNLR 271 (281)
Q Consensus 237 ~~l~~l~~L~~L~l~~n~-i~~~--~p~~~~~~~~~L~ 271 (281)
..+..+++|++|+++++. +++. ....+...+|+++
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 667778888888888874 5532 1122334566654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.26 E-value=5.5e-05 Score=64.91 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCE
Q 036746 144 SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223 (281)
Q Consensus 144 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 223 (281)
....+|+.+.+..+ +.......+..+..|+.+.+..+ +.......+..+.+|+.+.+..+ +.......|.++++|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34444555544332 22122334445555555555433 22122233444555555555432 22222334555555555
Q ss_pred EEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEecc
Q 036746 224 LSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT 276 (281)
Q Consensus 224 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~ 276 (281)
+.+..+.++..-..+|.++.+|+.+++..+ ++ .+....|.+|.+|+.+.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 555555554333445555555555555433 33 3444444455555555543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=5.1e-07 Score=68.69 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=37.6
Q ss_pred CCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccc-cccCCCcccCCC----CCCCEEEcccCc-CcccCCccCCCCCC
Q 036746 147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN-LIGNIPSSLGNL----SSLRGLSLSRNG-FYGSIPDTFGGLKN 220 (281)
Q Consensus 147 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~p~~~~~l~~ 220 (281)
.+|++|+++++.++..--..+..+++|+.|++++|. ++...-..+..+ ++|++|++++|. +++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345555555555443333334555555555555553 221111222222 245555555553 44332233444555
Q ss_pred CCEEEcccC
Q 036746 221 LVNLSLVVN 229 (281)
Q Consensus 221 L~~L~l~~n 229 (281)
|+.|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.19 E-value=4.9e-05 Score=65.19 Aligned_cols=146 Identities=11% Similarity=-0.007 Sum_probs=104.2
Q ss_pred hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCC
Q 036746 118 QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197 (281)
Q Consensus 118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 197 (281)
.+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ +...-...+..+.+|+.+.+..+ +.......|..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 4455667777777554 33244556788899999998765 44344567888899999988654 332334568888999
Q ss_pred CEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN 269 (281)
Q Consensus 198 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~ 269 (281)
+.+.+.++.+.......|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++ .+....|.++..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c~~ 357 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAFEGSSI 357 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTSSC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhCCCC
Confidence 99999988887556678899999999999654 55455567889999999988655 55 555555555543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.59 E-value=9.6e-05 Score=53.36 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=27.2
Q ss_pred EEEcccCcCc-ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccc
Q 036746 199 GLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256 (281)
Q Consensus 199 ~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~ 256 (281)
.++-++++++ ..+|..+. ++++.|+|++|+++...+..+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555543 23343221 24555555555555333344455555555555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.52 E-value=2.2e-05 Score=60.74 Aligned_cols=112 Identities=11% Similarity=0.044 Sum_probs=57.5
Q ss_pred CCCCCCcEEEccCC-CCCC----CCCcccCCCCCCcEEeccccccccCC----CcccCCCCCCCEEEcccCcCccc----
Q 036746 144 SNCSNLLVVSLALN-HLVG----KIPSEFGSLSKLQFLSTTANNLIGNI----PSSLGNLSSLRGLSLSRNGFYGS---- 210 (281)
Q Consensus 144 ~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~---- 210 (281)
.+-+.|++|++++| .+.. .+...+..-..|+.|++++|.+.... .+.+..-+.|++|+|++|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34566777777764 5542 12233444556666666666664322 22233335666666666666532
Q ss_pred CCccCCCCCCCCEEEcccC---cccc----ccChhccCCCCCcEEEcccCcc
Q 036746 211 IPDTFGGLKNLVNLSLVVN---NLSG----TIPPSIFNISSIQTFDVGSTYI 255 (281)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n---~l~~----~~p~~l~~l~~L~~L~l~~n~i 255 (281)
+-+.+..-+.|++|++++| .+.. .+...+..-++|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2334444555666666543 2221 1223344445666666665543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=2.4e-05 Score=60.58 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=8.0
Q ss_pred CCCCCCcEEEccCCCCC
Q 036746 144 SNCSNLLVVSLALNHLV 160 (281)
Q Consensus 144 ~~l~~L~~L~l~~n~~~ 160 (281)
..-+.|+.|++++|.+.
T Consensus 67 ~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSCCCEEECTTSCCB
T ss_pred hhCCCcCEEEccCCCCC
Confidence 33444555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0027 Score=45.59 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=29.7
Q ss_pred EEEcCCCCce-eecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccC
Q 036746 79 ILDLQNLKLV-GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF 135 (281)
Q Consensus 79 ~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 135 (281)
.++.++++++ ..+|..+. ++|++|+|++|.+....+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555565553 23443322 3466666666666644444555566666666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.98 E-value=17 Score=24.09 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=14.9
Q ss_pred hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746 118 QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154 (281)
Q Consensus 118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 154 (281)
.|.+|.+|+.+.+..+ ++..-...|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 4444555555444432 11122233444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.53 E-value=65 Score=21.16 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=34.7
Q ss_pred CceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCcc
Q 036746 86 KLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134 (281)
Q Consensus 86 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 134 (281)
+++..-...|.++..|+.+.|-.+ ++..-..+|.+|.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 333333456888899999999865 443455688899999999997644
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.43 E-value=35 Score=15.21 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=6.7
Q ss_pred CCCCcccceE
Q 036746 60 IHFCQWYGVT 69 (281)
Q Consensus 60 ~~~c~~~~~~ 69 (281)
+.-|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 4568888753
Done!