BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036748
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 55 KTPRDDCPVTLPEVTRSLR----PWGPREDKELSEFQVELIQLAAQLVGDY 101
K+ R+D T+ E++R PW PR +EL F +++ A+L D+
Sbjct: 96 KSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGAELDADH 146
>pdb|3LG5|A Chain A, F198a Epi-Isozizaene Synthase: Complex With Mg, Inorganic
Pyrophosphate And Benzyl Triethyl Ammonium Cation
Length = 381
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 81 KELSEFQVELIQLAAQLVGDYVLN------TYPNMGKNMTAGEANRYAEDAVKRFLEAGK 134
+E + + +L L ++ GD V N T+ ++ GE R E+ + FL +
Sbjct: 253 QEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVER 312
Query: 135 AAIRAGANESAIVTMR 150
A+R A+E A T+R
Sbjct: 313 DALRF-ADELADGTVR 327
>pdb|3KB9|A Chain A, Epi-Isozizaene Synthase: Complex With Mg, Inorganic
Pyrophosphate And Benzyl Triethyl Ammonium Cation
pdb|3KBK|A Chain A, Epi-Isozizaene Synthase Complexed With Hg
Length = 382
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 81 KELSEFQVELIQLAAQLVGDYVLN------TYPNMGKNMTAGEANRYAEDAVKRFLEAGK 134
+E + + +L L ++ GD V N T+ ++ GE R E+ + FL +
Sbjct: 254 QEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVER 313
Query: 135 AAIRAGANESAIVTMR 150
A+R A+E A T+R
Sbjct: 314 DALRF-ADELADGTVR 328
>pdb|3LGK|A Chain A, D99n Epi-Isozizaene Synthase
Length = 382
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 81 KELSEFQVELIQLAAQLVGDYVLN------TYPNMGKNMTAGEANRYAEDAVKRFLEAGK 134
+E + + +L L ++ GD V N T+ ++ GE R E+ + FL +
Sbjct: 254 QEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVER 313
Query: 135 AAIRAGANESAIVTMR 150
A+R A+E A T+R
Sbjct: 314 DALRF-ADELADGTVR 328
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 85 EFQVELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGAN 142
+F E+ + Q V + V TY M + A + E A KR++ GK RAG N
Sbjct: 638 QFNTEVTKQMIQDVSNDVRETYARMNAKVKALVSTVGIEIA-KRYIAGGKIFFRAGIN 694
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 85 EFQVELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGAN 142
+F E+ + Q V + V TY M + A + E A KR++ GK RAG N
Sbjct: 638 QFNTEVTKQMIQDVSNDVRETYARMNAKVKALVSTVGIEIA-KRYIAGGKIFFRAGIN 694
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 85 EFQVELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGAN 142
+F E+ + Q V + V TY M + A + E A KR++ GK RAG N
Sbjct: 644 QFNTEVTKQMIQDVSNDVRETYARMNAKVKALVSTVGIEIA-KRYIAGGKIFFRAGIN 700
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 75 WGPREDK--ELSEFQVELIQLAAQLV 98
W REDK E+S+ Q EL++ AA+LV
Sbjct: 354 WRLREDKINEMSQLQRELLESAARLV 379
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 15 SEFEHSSIPATVKKLFNLKSNFLTKRDAWAGTFEKFLQLRKTPRDDCPVTLPEVTRSLRP 74
EFE S +T+K L +++ + +R+ + P+ P ++ +R
Sbjct: 39 QEFEDVSYESTLKALADVEVTYTVQRN-----------ILDFPQHVSP------SKDIRT 81
Query: 75 WGPREDKELSEFQVELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAEDAVK 127
DK+LSEF VE+ + V ++ + K+ EA RY E +K
Sbjct: 82 ASTEADKKLSEFDVEMS--MREDVYQRIVWLQEKVQKDSLRPEAARYLERLIK 132
>pdb|1J8T|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(Ii)
pdb|1J8U|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(ii)
In Complex With Tetrahydrobiopterin
pdb|1LRM|A Chain A, Crystal Structure Of Binary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase With
Dihydrobiopterin (Bh2)
pdb|1KW0|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase
(Fe(Ii) ) In Complex With Tetrahydrobiopterin And
Thienylalanine
pdb|1MMK|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase ((Feii))
Complexed With Tetrahydrobiopterin And Thienylalanine
pdb|1MMT|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase (Fe(Ii))
Complexed With Tetrahydrobiopterin And Norleucine
Length = 325
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 64 TLPEVTRSLR----PWGPREDKELSEFQVELIQLAAQLVGDY 101
T+ E++R + PW PR +EL F +++ A+L D+
Sbjct: 3 TVHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADH 44
>pdb|4ANP|A Chain A, Crystal Structure Of Human Phenylalanine Hydroxylase In
Complex With A Pharmacological Chaperone
Length = 324
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 64 TLPEVTRSLR----PWGPREDKELSEFQVELIQLAAQLVGDY 101
T+ E++R + PW PR +EL F +++ A+L D+
Sbjct: 2 TVHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADH 43
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 15 SEFEHSSIPATVKKLFNLKSNFLTKRDAWAGTFEKFLQLRKTPRDDCPVTLPEVTRSLRP 74
EFE S +T+K L +++ + +R+ + P+ P ++ +R
Sbjct: 39 QEFEDVSYESTLKALADVEVTYTVQRN-----------ILDFPQHVSP------SKDIRT 81
Query: 75 WGPREDKELSEFQVELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAEDAVK 127
DK+LSEF VE+ + V ++ + K+ EA RY E +K
Sbjct: 82 ASTEADKKLSEFDVEMS--MREDVYQRIVWLQEKVQKDSLRPEAARYLERLIK 132
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 IRAGANESAIVTMRPSLTSRTAGGDYGSYAK 167
I +GA E + +T P+ S+ GDYG + K
Sbjct: 347 IESGAFEGSSITKYPTWLSKGNNGDYGIFTK 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,076,647
Number of Sequences: 62578
Number of extensions: 189291
Number of successful extensions: 482
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 22
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)