BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036748
         (169 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y7Z9|COQ6_SCHPO Probable ubiquinone biosynthesis monooxygenase coq6
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=coq6 PE=3 SV=2
          Length = 479

 Score = 31.6 bits (70), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 51  LQLRKTPRDDCPVTLPEVTRSLRPWGPREDKELSEFQVELIQLAAQLVGDYVLNTYPNMG 110
           LQ+++      P  + E+    R   P     + E+  E I L     GD   NT+P  G
Sbjct: 330 LQVKRNSNMQVPPVITEIVSGSRAAFPLRLAHVDEYVKEGIALC----GDAAHNTHPLAG 385

Query: 111 KNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTMRPSLTSR 156
           + +  G  +      V+  + A   AI+ G +  ++ +++P    R
Sbjct: 386 QGLNTGIQD------VESLISALSFAIKHGQDIGSVFSLQPYFRDR 425


>sp|C5C5I0|GCSH_BEUC1 Glycine cleavage system H protein OS=Beutenbergia cavernae (strain
           ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=gcvH PE=3 SV=1
          Length = 124

 Score = 30.8 bits (68), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 88  VELIQLAAQLVGDYVLNTYPNMGKNMTAGEA 118
           V + + AA+ +GD V    P++G  +TAGEA
Sbjct: 25  VGITEFAAEALGDVVFVQLPDVGAQLTAGEA 55


>sp|P04176|PH4H_RAT Phenylalanine-4-hydroxylase OS=Rattus norvegicus GN=Pah PE=1 SV=3
          Length = 453

 Score = 30.4 bits (67), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 55  KTPRDDCPVTLPEVTRSLR----PWGPREDKELSEFQVELIQLAAQLVGDY 101
           K+ R+D   T+ E++R       PW PR  +EL  F  +++   A+L  D+
Sbjct: 96  KSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGAELDADH 146


>sp|P16331|PH4H_MOUSE Phenylalanine-4-hydroxylase OS=Mus musculus GN=Pah PE=1 SV=4
          Length = 453

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 55  KTPRDDCPVTLPEVTRSLR----PWGPREDKELSEFQVELIQLAAQLVGDY 101
           K+ R+D   T+ E++R       PW PR  +EL  F  +++   A+L  D+
Sbjct: 96  KSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGAELDADH 146


>sp|Q27Z07|BIPS_SORAU Biphenyl synthase OS=Sorbus aucuparia GN=BIS PE=1 SV=1
          Length = 390

 Score = 29.6 bits (65), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 101 YVLNTYPNMGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTMRPSLTSRTA 158
           +VL+ Y NMG    A   +   +D  K+ +E GK+    G     ++ + P LT  TA
Sbjct: 328 HVLSEYGNMG----APSVHFILDDMRKKSIEEGKSTTGEGLEWGVVIGIGPGLTVETA 381


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,897,249
Number of Sequences: 539616
Number of extensions: 2382682
Number of successful extensions: 6448
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6446
Number of HSP's gapped (non-prelim): 9
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)