Query 036748
Match_columns 169
No_of_seqs 108 out of 116
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 05:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03396 PC_PLC phospholipase 98.1 2.4E-06 5.2E-11 82.5 4.6 58 10-68 404-462 (690)
2 TIGR03397 acid_phos_Burk acid 93.5 0.052 1.1E-06 51.2 2.6 33 10-42 430-463 (483)
3 PRK10605 N-ethylmaleimide redu 71.2 6.9 0.00015 35.1 4.6 36 109-148 145-180 (362)
4 COG1902 NemA NADH:flavin oxido 67.5 7.1 0.00015 35.5 3.9 37 109-149 135-171 (363)
5 PF11248 DUF3046: Protein of u 62.8 9.1 0.0002 27.2 2.9 36 81-120 1-41 (63)
6 cd02929 TMADH_HD_FMN Trimethyl 56.0 15 0.00033 32.9 3.8 37 109-149 136-172 (370)
7 cd02803 OYE_like_FMN_family Ol 54.2 18 0.00038 30.9 3.8 36 109-148 127-162 (327)
8 cd02931 ER_like_FMN Enoate red 50.8 20 0.00044 32.2 3.8 36 109-148 136-171 (382)
9 PLN02411 12-oxophytodienoate r 50.3 21 0.00045 32.4 3.8 35 109-147 151-185 (391)
10 cd04735 OYE_like_4_FMN Old yel 47.6 25 0.00054 31.1 3.8 36 109-148 130-165 (353)
11 KOG0532 Leucine-rich repeat (L 46.8 28 0.00061 34.8 4.3 37 109-148 624-660 (722)
12 cd04733 OYE_like_2_FMN Old yel 46.4 29 0.00062 30.4 3.9 35 109-147 135-169 (338)
13 cd02933 OYE_like_FMN Old yello 46.3 28 0.00061 30.9 3.9 37 109-149 138-174 (338)
14 cd04734 OYE_like_3_FMN Old yel 44.8 30 0.00066 30.6 3.9 36 109-148 127-162 (343)
15 cd02930 DCR_FMN 2,4-dienoyl-Co 43.6 33 0.00071 30.3 3.9 36 109-149 123-158 (353)
16 PF14246 TetR_C_7: AefR-like t 42.9 15 0.00033 23.4 1.3 24 109-132 31-54 (55)
17 cd04747 OYE_like_5_FMN Old yel 41.7 34 0.00073 31.0 3.7 38 109-150 130-167 (361)
18 PRK13523 NADPH dehydrogenase N 40.9 38 0.00081 30.2 3.9 37 109-149 128-164 (337)
19 cd02932 OYE_YqiM_FMN Old yello 40.3 40 0.00086 29.4 3.9 35 109-147 140-174 (336)
20 PF00724 Oxidored_FMN: NADH:fl 38.3 27 0.00057 30.8 2.5 35 111-149 137-171 (341)
21 COG0548 ArgB Acetylglutamate k 37.4 69 0.0015 28.3 4.9 70 82-152 161-246 (265)
22 COG0407 HemE Uroporphyrinogen- 32.4 45 0.00098 30.5 3.1 82 80-167 140-226 (352)
23 PF11344 DUF3146: Protein of u 30.2 23 0.00051 26.4 0.7 32 116-147 46-77 (80)
24 PRK08255 salicylyl-CoA 5-hydro 29.3 66 0.0014 31.5 3.8 37 109-149 537-573 (765)
25 PF01713 Smr: Smr domain; Int 28.8 62 0.0014 22.4 2.7 21 112-132 5-25 (83)
26 PRK00115 hemE uroporphyrinogen 25.4 61 0.0013 28.3 2.6 27 114-143 176-202 (346)
27 cd00717 URO-D Uroporphyrinogen 24.9 67 0.0014 27.7 2.7 29 112-143 165-193 (335)
28 PLN02433 uroporphyrinogen deca 24.0 69 0.0015 28.1 2.7 50 112-167 167-216 (345)
29 PF00195 Chal_sti_synt_N: Chal 22.4 1.1E+02 0.0024 26.2 3.6 39 113-151 87-127 (226)
30 smart00463 SMR Small MutS-rela 22.4 1.2E+02 0.0027 20.7 3.2 21 111-131 7-27 (80)
31 COG0685 MetF 5,10-methylenetet 21.8 3.2E+02 0.007 23.9 6.3 124 8-144 54-205 (291)
32 TIGR01464 hemE uroporphyrinoge 21.8 72 0.0016 27.6 2.3 27 114-143 170-196 (338)
33 cd03307 Mta_CmuA_like MtaA_Cmu 21.6 91 0.002 26.8 2.9 47 114-166 161-209 (326)
34 PF04967 HTH_10: HTH DNA bindi 21.4 2.7E+02 0.0059 18.8 4.9 43 83-132 1-43 (53)
35 PF06395 CDC24: CDC24 Calponin 21.0 1.5E+02 0.0032 22.4 3.5 33 117-151 37-69 (89)
36 PF10367 Vps39_2: Vacuolar sor 20.9 2.4E+02 0.0052 19.7 4.5 24 109-132 20-43 (109)
37 PLN02192 3-ketoacyl-CoA syntha 20.2 2E+02 0.0043 27.7 5.1 56 84-146 138-198 (511)
No 1
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=98.13 E-value=2.4e-06 Score=82.49 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=49.1
Q ss_pred CCCCCCccccccHHHHHHHHhCCCCCCCch-hhhhccchHHhhhcCCCCCCCCCCCCccc
Q 036748 10 GPTPHSEFEHSSIPATVKKLFNLKSNFLTK-RDAWAGTFEKFLQLRKTPRDDCPVTLPEV 68 (169)
Q Consensus 10 Gp~~~s~YeHSSIlaTl~~Lf~L~~~~LT~-RdawA~tFe~llt~l~tPRtDcP~~Lp~p 68 (169)
|-..+..|||||||++|.++|||....+|+ |++++++|.++|. ...|.+..+..||.+
T Consensus 404 G~V~s~~~DHtSvLrflE~~fgl~~~nis~wRra~~gDLtsafd-f~~p~~~~~p~lp~~ 462 (690)
T TIGR03396 404 GWVNSQVFDHTSVLRFLEKRFGVREPNISPWRRAVCGDLTSAFD-FSRPDTTPFPALPDT 462 (690)
T ss_pred CcccCccccHHHHHHHHHHHhCCCCcccChhhhcccccHHHhcC-CCCCCcccCCCCCCc
Confidence 455778999999999999999999767898 9999999999999 777766654566655
No 2
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=93.50 E-value=0.052 Score=51.18 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=25.7
Q ss_pred CCCCCCccccccHHHHHHHHhCCCC-CCCchhhh
Q 036748 10 GPTPHSEFEHSSIPATVKKLFNLKS-NFLTKRDA 42 (169)
Q Consensus 10 Gp~~~s~YeHSSIlaTl~~Lf~L~~-~~LT~Rda 42 (169)
|-..+..|+|+||++||.++|||++ ..+|+|++
T Consensus 430 G~v~~~~~dh~SiL~Tie~~~GL~~L~~is~~~~ 463 (483)
T TIGR03397 430 GYVDHTPYDTTSILRFITRRFGLPPLPGVKARDR 463 (483)
T ss_pred CcEeCceeeeehHHHHHHHHhCCCCcCCCchhhh
Confidence 4456789999999999999999994 23466654
No 3
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=71.22 E-value=6.9 Score=35.06 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.++.||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 145 ~p~~mt~~e----I~~ii~~f~~AA~rA~~AGfDGVEIh~ 180 (362)
T PRK10605 145 TPRALELEE----IPGIVNDFRQAIANAREAGFDLVELHS 180 (362)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 567899888 556677899999999999999988753
No 4
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=67.50 E-value=7.1 Score=35.48 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTM 149 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~ 149 (169)
.++.||..| |++.++.|.+++++|+++|.|.=+|--.
T Consensus 135 ~pr~mt~~e----I~~ii~~f~~AA~rA~~AGFDgVEIH~A 171 (363)
T COG1902 135 TPRELTEEE----IEEVIEDFARAARRAKEAGFDGVEIHGA 171 (363)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEeec
Confidence 688899988 6778889999999999999999877543
No 5
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=62.82 E-value=9.1 Score=27.23 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCccHHHHHHHH-----HHHhhcCCcccccCCCCCCCCCHHHHHH
Q 036748 81 KELSEFQVELIQ-----LAAQLVGDYVLNTYPNMGKNMTAGEANR 120 (169)
Q Consensus 81 a~LseFQ~eLv~-----lAa~Lngdh~~~~~p~~~~~mtv~ea~~ 120 (169)
+.||||.+-|-. -+..|..||+++.+ .+.|+.||.+
T Consensus 1 MRlteFw~~~~~~FG~~~~~~la~dhvL~~L----GgrT~~eAL~ 41 (63)
T PF11248_consen 1 MRLTEFWQLMEEEFGPAYGRSLARDHVLSEL----GGRTAAEALE 41 (63)
T ss_pred CcHHHHHHHHHHHhCchhHHHHHHhcchhhc----CCcCHHHHHH
Confidence 368999988775 47778889999873 5688888764
No 6
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=55.98 E-value=15 Score=32.87 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTM 149 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~ 149 (169)
.++.||..| |++.++.|.+++++|+++|.|.=+|-.-
T Consensus 136 ~p~~mt~~e----I~~ii~~f~~AA~ra~~aGfDgVEih~a 172 (370)
T cd02929 136 QAREMDKDD----IKRVRRWYVDAALRARDAGFDIVYVYAA 172 (370)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 468899877 5566778889999999999999877543
No 7
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.24 E-value=18 Score=30.93 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=29.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.++.||..|- ++.++.|.+++++|.++|.|+=+|-.
T Consensus 127 ~~~~mt~~ei----~~~i~~~~~aA~~a~~aGfDgveih~ 162 (327)
T cd02803 127 PPREMTKEEI----EQIIEDFAAAARRAKEAGFDGVEIHG 162 (327)
T ss_pred CCCcCCHHHH----HHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 6788999985 45667789999999999999877754
No 8
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=50.80 E-value=20 Score=32.23 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 136 ~p~~mt~~e----I~~ii~~f~~AA~ra~~AGfDgVEih~ 171 (382)
T cd02931 136 TCRELTTEE----VETFVGKFGESAVIAKEAGFDGVEIHA 171 (382)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 457788888 456778899999999999999977654
No 9
>PLN02411 12-oxophytodienoate reductase
Probab=50.33 E-value=21 Score=32.43 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIV 147 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv 147 (169)
.+..||..| |+..++.|.+++++|+++|.|.=+|-
T Consensus 151 ~pr~mt~~e----I~~ii~~f~~AA~rA~~AGFDGVEIH 185 (391)
T PLN02411 151 KPRALETSE----IPEVVEHYRQAALNAIRAGFDGIEIH 185 (391)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 467788877 55667789999999999999987764
No 10
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.57 E-value=25 Score=31.13 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.++.||..|- ++-++.|.+++++|+++|.|.=+|-.
T Consensus 130 ~p~~mt~~eI----~~ii~~f~~aA~~a~~aGfDgVeih~ 165 (353)
T cd04735 130 TPRELTHEEI----EDIIDAFGEATRRAIEAGFDGVEIHG 165 (353)
T ss_pred CCccCCHHHH----HHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4678998885 45677899999999999999987754
No 11
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=46.77 E-value=28 Score=34.76 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=29.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
++.-.-++=++.=|+.-|..|||+ ||+.|++|..|--
T Consensus 624 VPSPaV~klsmarcrrNVdnFLea---CRkiGVpEa~lCS 660 (722)
T KOG0532|consen 624 VPSPAVPKLSMARCRRNVDNFLEA---CRKIGVPEADLCS 660 (722)
T ss_pred cCCCccchhHHHHHHHhHHHHHHH---HHHcCCChHhhcC
Confidence 666667777888899999999998 5679999877643
No 12
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=46.38 E-value=29 Score=30.41 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIV 147 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv 147 (169)
.+..||..| |++-++.|.+++++|+++|.|.=+|-
T Consensus 135 ~p~~mt~~e----I~~~i~~~~~aA~ra~~aGfDgVeih 169 (338)
T cd04733 135 KPRAMTEEE----IEDVIDRFAHAARLAQEAGFDGVQIH 169 (338)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 467888877 55666778999999999999987764
No 13
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=46.25 E-value=28 Score=30.87 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTM 149 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~ 149 (169)
.++.||..| |++-+..|.+++++|+++|.|.=+|-..
T Consensus 138 ~p~~mt~~e----I~~ii~~f~~aA~~a~~aGfDgVeih~a 174 (338)
T cd02933 138 TPRALTTEE----IPGIVADFRQAARNAIEAGFDGVEIHGA 174 (338)
T ss_pred CCCCCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 567899877 5566778999999999999999877543
No 14
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=44.75 E-value=30 Score=30.61 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..|-. ..++.|.+++++|+++|.|.=+|-.
T Consensus 127 ~~~~mt~~eI~----~ii~~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 127 VPKAMEEEDIE----EIIAAFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred CCCcCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 35679998855 5567788999999999999987765
No 15
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=43.56 E-value=33 Score=30.30 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTM 149 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~ 149 (169)
.+..||..|- ++.++.|.+++++|+++|.|.=+| +.
T Consensus 123 ~p~~mt~~eI----~~i~~~f~~aA~~a~~aGfDgVei-h~ 158 (353)
T cd02930 123 TPRELSEEEI----EQTIEDFARCAALAREAGYDGVEI-MG 158 (353)
T ss_pred CCCCCCHHHH----HHHHHHHHHHHHHHHHcCCCEEEE-ec
Confidence 5678999885 455677889999999999999888 44
No 16
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=42.92 E-value=15 Score=23.35 Aligned_cols=24 Identities=38% Similarity=0.456 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEA 132 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~ 132 (169)
+....+..|-..+|+.+|.-||.+
T Consensus 31 ~~~~~s~~e~~~~v~~aV~~FL~a 54 (55)
T PF14246_consen 31 LAPPPSAEEIERIVESAVDMFLRA 54 (55)
T ss_dssp TS----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHhh
Confidence 456678999999999999999975
No 17
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.67 E-value=34 Score=30.96 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeeec
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTMR 150 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~~ 150 (169)
.+..||..|-. +-++.|.+++++|+++|.|.=+|-...
T Consensus 130 ~p~~mt~~eI~----~ii~~f~~AA~~a~~aGfDgVeih~ah 167 (361)
T cd04747 130 VGREMTEADID----DVIAAFARAAADARRLGFDGIELHGAH 167 (361)
T ss_pred CCccCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 35779998854 556789999999999999987776544
No 18
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=40.91 E-value=38 Score=30.18 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTM 149 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~ 149 (169)
.+..||..|-. +-++.|.+++++|+++|.|.=+|-.-
T Consensus 128 ~p~~mt~eeI~----~ii~~f~~aA~~a~~aGfDgVeih~a 164 (337)
T PRK13523 128 TPVEMTKEQIK----ETVLAFKQAAVRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCcCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 56789988754 55577889999999999998777543
No 19
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=40.32 E-value=40 Score=29.43 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIV 147 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv 147 (169)
.++.||..|- ++.+..|.+++++|+++|.|.=+|-
T Consensus 140 ~p~~mt~~eI----~~ii~~~~~aA~~a~~aGfDgVei~ 174 (336)
T cd02932 140 TPRELTREEI----AEVVDAFVAAARRAVEAGFDVIEIH 174 (336)
T ss_pred CCCcCCHHHH----HHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5688998875 5566778899999999999987764
No 20
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=38.28 E-value=27 Score=30.77 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Q 036748 111 KNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTM 149 (169)
Q Consensus 111 ~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~ 149 (169)
..||..| |++-++.|.+++++|+++|.|.=+|-..
T Consensus 137 ~~mt~~e----I~~ii~~f~~AA~~A~~AGfDGVEIH~a 171 (341)
T PF00724_consen 137 REMTEEE----IEEIIEDFAQAARRAKEAGFDGVEIHAA 171 (341)
T ss_dssp EE--HHH----HHHHHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred eeCCHHH----HHHHHHHHHHHHHHHHHhccCeEeeccc
Confidence 4688777 5667789999999999999999877654
No 21
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=37.44 E-value=69 Score=28.34 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=51.0
Q ss_pred CccHHHHHHHHHHHhhcCC---------cccccCCC--CCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHhCCCCCC
Q 036748 82 ELSEFQVELIQLAAQLVGD---------YVLNTYPN--MGKNMTAGEANRYAEDA-----VKRFLEAGKAAIRAGANESA 145 (169)
Q Consensus 82 ~LseFQ~eLv~lAa~Lngd---------h~~~~~p~--~~~~mtv~ea~~yv~~a-----v~~fl~~~~~a~~~g~d~~~ 145 (169)
-+|-=|.+ -++|+.|.-+ -+++.+++ +-..+++.|+.+++++. ...++++|..|.+.|+...+
T Consensus 161 NvnaD~~A-~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ 239 (265)
T COG0548 161 NVNADTAA-GALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVH 239 (265)
T ss_pred eeCHHHHH-HHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEE
Confidence 45544443 5677777744 23333444 66788999999999963 56899999999999999999
Q ss_pred eeeecCC
Q 036748 146 IVTMRPS 152 (169)
Q Consensus 146 iv~~~~~ 152 (169)
|+.-+-+
T Consensus 240 ii~g~~~ 246 (265)
T COG0548 240 IISGRVP 246 (265)
T ss_pred EecCCCc
Confidence 9876654
No 22
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=32.37 E-value=45 Score=30.47 Aligned_cols=82 Identities=22% Similarity=0.185 Sum_probs=58.1
Q ss_pred CCCccHHHHHHHHHHHhhcCCcccccCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeeecCCCC
Q 036748 80 DKELSEFQVELIQLAAQLVGDYVLNTYPN-----MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTMRPSLT 154 (169)
Q Consensus 80 ~a~LseFQ~eLv~lAa~Lngdh~~~~~p~-----~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~~~~~~ 154 (169)
+.+|--|-..=..||+.|.|++....|.. ..+--.+.+..+-+.+++..|+++ +.++|+ ++|++-.+-.
T Consensus 140 ~~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~---qi~aGA---davqifDsW~ 213 (352)
T COG0407 140 EVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKA---QIEAGA---DAVQIFDSWA 213 (352)
T ss_pred CCCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH---HHHhCC---CEEEeecccc
Confidence 56788888888899999998877665543 345556778888888988888876 889999 4566655533
Q ss_pred CCCCCCCcccccc
Q 036748 155 SRTAGGDYGSYAK 167 (169)
Q Consensus 155 ~~~~~~~~~~~~~ 167 (169)
..-.-.||..|+.
T Consensus 214 g~l~~~~~~~f~~ 226 (352)
T COG0407 214 GVLSMIDYDEFVL 226 (352)
T ss_pred ccCCcccHHHHhh
Confidence 3333555766654
No 23
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=30.16 E-value=23 Score=26.43 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCee
Q 036748 116 GEANRYAEDAVKRFLEAGKAAIRAGANESAIV 147 (169)
Q Consensus 116 ~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv 147 (169)
.-+..-|.|++.|||+.+...++.|.|-+=.|
T Consensus 46 slGRALI~d~L~RFL~k~DY~LEpGgdY~Fti 77 (80)
T PF11344_consen 46 SLGRALIQDPLGRFLEKSDYQLEPGGDYSFTI 77 (80)
T ss_pred ccchHHHHhHHHHHHhhcceeccCCCceEEEE
Confidence 44567899999999999999999998865443
No 24
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=29.28 E-value=66 Score=31.51 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTM 149 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~ 149 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-.-
T Consensus 537 ~p~~mt~~e----I~~~i~~f~~aA~~a~~aGfDgveih~a 573 (765)
T PRK08255 537 VPREMTRAD----MDRVRDDFVAAARRAAEAGFDWLELHCA 573 (765)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 567899777 4556677889999999999998776543
No 25
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=28.77 E-value=62 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 036748 112 NMTAGEANRYAEDAVKRFLEA 132 (169)
Q Consensus 112 ~mtv~ea~~yv~~av~~fl~~ 132 (169)
+|++.||..++++.+..+.+.
T Consensus 5 G~~~~eA~~~l~~~l~~~~~~ 25 (83)
T PF01713_consen 5 GLTVEEALRALEEFLDEARQR 25 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHc
Confidence 689999999888766655444
No 26
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=25.41 E-value=61 Score=28.32 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 036748 114 TAGEANRYAEDAVKRFLEAGKAAIRAGANE 143 (169)
Q Consensus 114 tv~ea~~yv~~av~~fl~~~~~a~~~g~d~ 143 (169)
.+.++.++|.+.+..|+++ ++++|+|.
T Consensus 176 ~v~~ll~~~t~~~~~~~~~---~~eaGad~ 202 (346)
T PRK00115 176 LLHALLDKLADATIAYLNA---QIEAGAQA 202 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHcCCCE
Confidence 4677788888888888776 56788863
No 27
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=24.85 E-value=67 Score=27.72 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 036748 112 NMTAGEANRYAEDAVKRFLEAGKAAIRAGANE 143 (169)
Q Consensus 112 ~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~ 143 (169)
---|.++.++|.+.+..|.++ +.++|+|.
T Consensus 165 Pe~v~~~l~~it~~~~~~~~~---~ieaGad~ 193 (335)
T cd00717 165 PEAFHALLDKLTDATIEYLKA---QIEAGAQA 193 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhCCCE
Confidence 345677777888877777766 45679883
No 28
>PLN02433 uroporphyrinogen decarboxylase
Probab=24.01 E-value=69 Score=28.12 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeeecCCCCCCCCCCCcccccc
Q 036748 112 NMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTMRPSLTSRTAGGDYGSYAK 167 (169)
Q Consensus 112 ~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~~~~~~~~~~~~~~~~~~~ 167 (169)
--.|.++.++|.+.+..|+.+ +.++|++ ++.+..+..+.-+...|.+|+.
T Consensus 167 Pe~v~~ll~~it~~~~~~~~~---~ieaGa~---~i~i~d~~~~~lsp~~f~ef~~ 216 (345)
T PLN02433 167 PEVLHALLDKLTDAVIEYVDY---QIDAGAQ---VVQIFDSWAGHLSPVDFEEFSK 216 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHcCCC---EEEEecCccccCCHHHHHHHHH
Confidence 345777888888888888776 4678984 4444443333332455665543
No 29
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=22.45 E-value=1.1e+02 Score=26.24 Aligned_cols=39 Identities=33% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCHHHHH-HHHHHHHHHHHHHHHHHHH-hCCCCCCeeeecC
Q 036748 113 MTAGEAN-RYAEDAVKRFLEAGKAAIR-AGANESAIVTMRP 151 (169)
Q Consensus 113 mtv~ea~-~yv~~av~~fl~~~~~a~~-~g~d~~~iv~~~~ 151 (169)
-+..+-+ -|.+.++.-..+++++|++ .|.+.++|-++.-
T Consensus 87 ps~~~R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~ 127 (226)
T PF00195_consen 87 PSLAERNALYAEEAPPLAEEAARKALAEAGLDPSDITHLVT 127 (226)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-GGGECEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccceEEE
Confidence 3566664 4888888888999999997 7999998877653
No 30
>smart00463 SMR Small MutS-related domain.
Probab=22.42 E-value=1.2e+02 Score=20.70 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 036748 111 KNMTAGEANRYAEDAVKRFLE 131 (169)
Q Consensus 111 ~~mtv~ea~~yv~~av~~fl~ 131 (169)
-+|++.||...+.+.+..+..
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~ 27 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARL 27 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 479999999887665544433
No 31
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=21.81 E-value=3.2e+02 Score=23.89 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCCCCCCccccccHHHHHHHHhCC-CCCCCchhhhhccchHHhhhcCC--------CCCCCCCCCCccccccCCCCCCC
Q 036748 8 PNGPTPHSEFEHSSIPATVKKLFNL-KSNFLTKRDAWAGTFEKFLQLRK--------TPRDDCPVTLPEVTRSLRPWGPR 78 (169)
Q Consensus 8 p~Gp~~~s~YeHSSIlaTl~~Lf~L-~~~~LT~RdawA~tFe~llt~l~--------tPRtDcP~~Lp~p~~s~r~~~~~ 78 (169)
+.|+-.+...++..+.+.++..-+. .=..||.||..--.+...|.... --|-|-| ...-|..
T Consensus 54 ~d~~~~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~~~-------- 124 (291)
T COG0685 54 PDGSRGTPRRTSVAAAALLKRTGGIEPIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPP-AGDKPGG-------- 124 (291)
T ss_pred cCCCCCCCcccHHHHHHHHHhcCCCccceeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCC-CCCCCCc--------
Confidence 5554444556665555555555455 22269999986666665554111 1244444 1111111
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccc---ccCCC-CCCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHh
Q 036748 79 EDKELSEFQVELIQLAAQLVGDYVL---NTYPN-MGKNMTAGEANRYAEDAV---------------KRFLEAGKAAIRA 139 (169)
Q Consensus 79 ~~a~LseFQ~eLv~lAa~Lngdh~~---~~~p~-~~~~mtv~ea~~yv~~av---------------~~fl~~~~~a~~~ 139 (169)
+ -..=.+||+++...++|+.. ..||+ -++.-++.+...|++..+ ..|..-.++++.+
T Consensus 125 ---~-~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~lkrKv~aGAd~~iTQ~~fd~e~~~~~~~~~~~~ 200 (291)
T COG0685 125 ---K-DLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRLKRKVDAGADFFITQFFFDVEAFERFAERVRAA 200 (291)
T ss_pred ---c-ccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHhcchHHHHHHHccCHHHHHHHHHHHHhc
Confidence 0 12236899999999998643 44998 566677777777777554 4555666678888
Q ss_pred CCCCC
Q 036748 140 GANES 144 (169)
Q Consensus 140 g~d~~ 144 (169)
|+|--
T Consensus 201 g~~~p 205 (291)
T COG0685 201 GIDIP 205 (291)
T ss_pred CCCCC
Confidence 88543
No 32
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=21.77 E-value=72 Score=27.63 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 036748 114 TAGEANRYAEDAVKRFLEAGKAAIRAGANE 143 (169)
Q Consensus 114 tv~ea~~yv~~av~~fl~~~~~a~~~g~d~ 143 (169)
-|.++.++|.+.+.+|.++ +.++|+|.
T Consensus 170 ~v~~ll~~~t~~~~~~~~~---~~eaGad~ 196 (338)
T TIGR01464 170 VLHALLNKLTDATIEYLVE---QVKAGAQA 196 (338)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHcCCCE
Confidence 3777888888888888776 45789875
No 33
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=21.55 E-value=91 Score=26.84 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeeecCCCCCCC--CCCCccccc
Q 036748 114 TAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTMRPSLTSRT--AGGDYGSYA 166 (169)
Q Consensus 114 tv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~~~~~~~~~--~~~~~~~~~ 166 (169)
.+.++.++|.+.+.+|+++ +.++|+|. +.+..+..+.. +...|.+|+
T Consensus 161 ~~~~ll~~it~~~~~~~~~---~~eaGad~---i~i~d~~a~~~~isp~~f~e~~ 209 (326)
T cd03307 161 KVREFLEFLTEACIEYAKA---QLEAGADI---ITIADPTASPELISPEFYEEFA 209 (326)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHcCCCE---EEecCCCccccccCHHHHHHHH
Confidence 3566666677766666654 56788874 55544433332 234555554
No 34
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=21.35 E-value=2.7e+02 Score=18.78 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHhhcCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 036748 83 LSEFQVELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAEDAVKRFLEA 132 (169)
Q Consensus 83 LseFQ~eLv~lAa~Lngdh~~~~~p~~~~~mtv~ea~~yv~~av~~fl~~ 132 (169)
||+-|.+.+..|-.+ | |-+.|...|..|-++-+.=.-..+.+.
T Consensus 1 LT~~Q~e~L~~A~~~--G-----Yfd~PR~~tl~elA~~lgis~st~~~~ 43 (53)
T PF04967_consen 1 LTDRQREILKAAYEL--G-----YFDVPRRITLEELAEELGISKSTVSEH 43 (53)
T ss_pred CCHHHHHHHHHHHHc--C-----CCCCCCcCCHHHHHHHhCCCHHHHHHH
Confidence 788999999877553 3 334677777777665554333333333
No 35
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=21.00 E-value=1.5e+02 Score=22.36 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeeecC
Q 036748 117 EANRYAEDAVKRFLEAGKAAIRAGANESAIVTMRP 151 (169)
Q Consensus 117 ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~~~ 151 (169)
.-.+=++.++-.|+.+|+. +.|.++++..++..
T Consensus 37 ~~~k~~K~ai~~Fi~ack~--~L~~~~~e~FtIsd 69 (89)
T PF06395_consen 37 DDLKVCKKAIYKFIQACKQ--ELGFPDEELFTISD 69 (89)
T ss_pred chHHHHHHHHHHHHHHHHH--hcCCCccceeeeec
Confidence 3447799999999999988 46888888877654
No 36
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=20.94 E-value=2.4e+02 Score=19.67 Aligned_cols=24 Identities=0% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEA 132 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~ 132 (169)
||+.|++.+-.+|+..++....+.
T Consensus 20 LP~~~~l~~l~~fl~~~l~~~~~~ 43 (109)
T PF10367_consen 20 LPDDWPLSDLSDFLCKSLRKYSNR 43 (109)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887654
No 37
>PLN02192 3-ketoacyl-CoA synthase
Probab=20.18 E-value=2e+02 Score=27.68 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHhhcCCcccccCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCe
Q 036748 84 SEFQVELIQLAAQLVGDYVLNTYPN----MGKNMTAGEANRYAEDAVKRFLEAGKAAIR-AGANESAI 146 (169)
Q Consensus 84 seFQ~eLv~lAa~Lngdh~~~~~p~----~~~~mtv~ea~~yv~~av~~fl~~~~~a~~-~g~d~~~i 146 (169)
=+||.-+++- +.| || .+-+|. ++...|.++|.+-+ ..-+.+++++|++ .|+++++|
T Consensus 138 ~~f~~~~~~~-sgl-g~--~t~~p~~~~~~~~~~~~~~~~~Ea---~~~~~~Aa~~aL~kaGi~p~DI 198 (511)
T PLN02192 138 LEFQRKILER-SGL-GE--STYLPEAVLNVPPNPCMAEARKEA---ETVMFGAIDQLLAKTSVKPKDI 198 (511)
T ss_pred HHHHHHHHHh-cCC-CC--cccCChhhccCCCCccHHHHHHHH---HHHHHHHHHHHHHHcCCCHHHC
Confidence 3677777662 122 33 233453 67788988887654 4456778888875 89998876
Done!