Query 036748
Match_columns 169
No_of_seqs 108 out of 116
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 08:06:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d1g_A Acid phosphatase; ACPA, 97.8 1E-05 3.6E-10 74.0 3.7 48 10-59 427-476 (498)
2 4a3u_A NCR, NADH\:flavin oxido 63.8 2.1 7.3E-05 36.6 1.1 36 109-148 138-173 (358)
3 4gbu_A NADPH dehydrogenase 1; 63.4 4.8 0.00016 34.9 3.2 35 110-148 159-193 (400)
4 3l5l_A Xenobiotic reductase A; 49.7 11 0.00039 32.0 3.3 36 109-148 144-179 (363)
5 3hgj_A Chromate reductase; TIM 48.7 12 0.00042 31.6 3.2 36 109-148 138-173 (349)
6 3gr7_A NADPH dehydrogenase; fl 47.5 13 0.00045 31.5 3.3 36 109-148 130-165 (340)
7 4ab4_A Xenobiotic reductase B; 45.3 14 0.00049 31.9 3.2 36 109-148 139-174 (362)
8 3kru_A NADH:flavin oxidoreduct 43.9 16 0.00055 31.2 3.3 35 109-147 129-163 (343)
9 2dun_A POL MU, DNA polymerase 42.7 90 0.0031 24.0 7.0 64 89-152 29-112 (133)
10 1z41_A YQJM, probable NADH-dep 41.4 18 0.0006 30.4 3.1 36 109-148 130-165 (338)
11 3tjl_A NADPH dehydrogenase; OL 34.3 22 0.00075 31.5 2.7 38 109-150 153-191 (407)
12 1ps9_A 2,4-dienoyl-COA reducta 33.4 33 0.0011 30.9 3.7 35 109-147 127-161 (671)
13 1o94_A Tmadh, trimethylamine d 32.6 27 0.00092 32.1 3.1 36 109-148 135-170 (729)
14 3k30_A Histamine dehydrogenase 32.5 28 0.00096 31.5 3.1 35 109-147 142-176 (690)
15 2b3h_A Methionine aminopeptida 30.7 72 0.0025 26.9 5.2 70 56-126 39-119 (329)
16 3l5a_A NADH/flavin oxidoreduct 30.4 28 0.00095 30.6 2.7 36 109-148 156-191 (419)
17 2gou_A Oxidoreductase, FMN-bin 29.8 34 0.0012 29.2 3.1 35 109-147 147-181 (365)
18 3fau_A NEDD4-binding protein 2 28.6 70 0.0024 21.3 3.9 18 111-128 6-23 (82)
19 3mcm_A 2-amino-4-hydroxy-6-hyd 27.1 46 0.0016 30.0 3.5 61 88-148 305-365 (442)
20 2l10_A Talin-1; helical bundle 24.6 58 0.002 25.5 3.3 52 81-135 34-88 (158)
21 2zqe_A MUTS2 protein; alpha/be 24.6 63 0.0022 22.1 3.2 31 111-148 10-40 (83)
22 3kxr_A Magnesium transporter, 24.1 72 0.0025 24.3 3.7 43 82-124 36-82 (205)
23 3gka_A N-ethylmaleimide reduct 23.9 43 0.0015 28.8 2.7 36 109-148 147-182 (361)
24 2vef_A Dihydropteroate synthas 23.1 57 0.0019 27.7 3.2 64 88-152 119-203 (314)
25 3pka_A Methionine aminopeptida 22.9 1.4E+02 0.0049 24.0 5.5 70 56-126 13-85 (285)
26 3tr9_A Dihydropteroate synthas 22.5 94 0.0032 26.7 4.5 62 89-152 139-201 (314)
27 1vq8_R 50S ribosomal protein L 22.0 1.2E+02 0.0043 23.4 4.7 14 111-124 37-50 (155)
28 1g2y_A Hepatocyte nuclear fact 21.8 33 0.0011 20.8 1.1 12 81-92 3-14 (32)
29 1e5p_A Aphrodisin; lipocalin, 20.1 77 0.0026 22.4 3.0 25 124-151 121-145 (151)
No 1
>2d1g_A Acid phosphatase; ACPA, decavanadate vanadate, hydrolase; HET: DVT ETE PGE; 1.75A {Francisella tularensis subsp}
Probab=97.80 E-value=1e-05 Score=73.96 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=40.8
Q ss_pred CCCCCCccccccHHHHHHHHhCCCCCCCch--hhhhccchHHhhhcCCCCCC
Q 036748 10 GPTPHSEFEHSSIPATVKKLFNLKSNFLTK--RDAWAGTFEKFLQLRKTPRD 59 (169)
Q Consensus 10 Gp~~~s~YeHSSIlaTl~~Lf~L~~~~LT~--RdawA~tFe~llt~l~tPRt 59 (169)
|-..+..|+|+|||+||.++|||+ .|++ ||++|+++..+++-...||+
T Consensus 427 G~V~~~~~dH~Silrtie~~~gl~--~l~~~~~da~a~~l~~~F~F~~~p~~ 476 (498)
T 2d1g_A 427 NYVDHSLLNQASVLKFIEYNWGIG--SVSKYSNDKYSNNILNMFDFNKEQKT 476 (498)
T ss_dssp TEEECCCEETHHHHHHHHHHHTCC--CSCTTCGGGGCCCSGGGBCSSCSSCC
T ss_pred CceeCCccchhHHHHHHHHHhCCC--CCCcccccccccCHHHHhCCCCCCCC
Confidence 445677899999999999999999 7887 99999999999994344774
No 2
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=63.77 E-value=2.1 Score=36.59 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
+++.||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 138 ~pr~mt~~e----I~~ii~~F~~AA~rA~~AGFDgVEIH~ 173 (358)
T 4a3u_A 138 VARALRLDE----IPRLLDDYEKAARHALKAGFDGVQIHA 173 (358)
T ss_dssp EEEECCGGG----HHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cCccCCHHH----HHHHHHHHHHHHHHHHHcCCCeEeecc
Confidence 356799888 777888999999999999999877754
No 3
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=63.37 E-value=4.8 Score=34.94 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 110 GKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 110 ~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
+..||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 159 pr~mt~~e----I~~ii~~F~~AA~rA~~AGFDgVEIH~ 193 (400)
T 4gbu_A 159 QHSLTKDE----IKQYIKEYVQAAKNSIAAGADGVEIHS 193 (400)
T ss_dssp CEECCHHH----HHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CccCCHHH----HHHHHHHHHHHHHHHHhcCcCeeeecc
Confidence 45688887 567778899999999999999877643
No 4
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=49.70 E-value=11 Score=32.02 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 144 ~p~~mt~~e----I~~ii~~f~~aA~~a~~aGfDgVEih~ 179 (363)
T 3l5l_A 144 VPREMTLDD----IARVKQDFVDAARRARDAGFEWIELHF 179 (363)
T ss_dssp CCEECCHHH----HHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 567899887 556778899999999999999866654
No 5
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=48.70 E-value=12 Score=31.62 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 138 ~p~~mt~~e----I~~ii~~f~~aA~~a~~aGfDgVEih~ 173 (349)
T 3hgj_A 138 VPEPLDEAG----MERILQAFVEGARRALRAGFQVIELHM 173 (349)
T ss_dssp CCEECCHHH----HHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 567899888 566778899999999999999766544
No 6
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=47.49 E-value=13 Score=31.49 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 130 ~p~~mt~~e----I~~ii~~f~~aA~~a~~aGfDgVEih~ 165 (340)
T 3gr7_A 130 TPKEMTKAD----IEETVQAFQNGARRAKEAGFDVIEIHA 165 (340)
T ss_dssp CCEECCHHH----HHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 578899888 567778899999999999999866654
No 7
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=45.32 E-value=14 Score=31.89 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 139 ~pr~mt~~e----I~~ii~~f~~AA~~a~~aGfDgVEih~ 174 (362)
T 4ab4_A 139 TPRALETEE----INDIVEAYRSGAENAKAAGFDGVEIHG 174 (362)
T ss_dssp CCEECCHHH----HHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 567899988 556778899999999999999876654
No 8
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=43.89 E-value=16 Score=31.22 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIV 147 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv 147 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-
T Consensus 129 ~p~~mt~~e----I~~ii~~f~~AA~~a~~aGfDgVEih 163 (343)
T 3kru_A 129 LPRELSVEE----IKSIVKAFGEAAKRANLAGYDVVEIH 163 (343)
T ss_dssp CCEECCHHH----HHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CchhcCHHH----HHHHHHHHHHHHhhccccCCceEEEe
Confidence 577899887 56677889999999999999987776
No 9
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=42.66 E-value=90 Score=23.96 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCcccccCCC-----CCCCCCHHHHHHHHHHHH--------------HHHHHHHHHHHH-hCCCCCCeee
Q 036748 89 ELIQLAAQLVGDYVLNTYPN-----MGKNMTAGEANRYAEDAV--------------KRFLEAGKAAIR-AGANESAIVT 148 (169)
Q Consensus 89 eLv~lAa~Lngdh~~~~~p~-----~~~~mtv~ea~~yv~~av--------------~~fl~~~~~a~~-~g~d~~~iv~ 148 (169)
++..-.+..+|.-+.+.|.. +.++|+..++..|+++.+ -.||.+|.++.+ ...++.++..
T Consensus 29 ~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdisWltecm~~g~pV~~e~~~~l~ 108 (133)
T 2dun_A 29 AFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDISWLTESLGAGQPVPVECRHRLE 108 (133)
T ss_dssp HHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEHHHHHHHHHHTSCCCCCTTTSCC
T ss_pred HHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEeccHHHHHHHhcCCcCCcccceEee
Confidence 33333344478888888864 679999999999997666 379999999888 5666777776
Q ss_pred ecCC
Q 036748 149 MRPS 152 (169)
Q Consensus 149 ~~~~ 152 (169)
+.++
T Consensus 109 ~~~~ 112 (133)
T 2dun_A 109 VAGP 112 (133)
T ss_dssp CCSC
T ss_pred cccc
Confidence 6553
No 10
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=41.40 E-value=18 Score=30.37 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 130 ~p~~mt~~e----I~~~i~~~~~aA~~a~~aGfDgVeih~ 165 (338)
T 1z41_A 130 TPVEMSAEK----VKETVQEFKQAAARAKEAGFDVIEIHA 165 (338)
T ss_dssp CCEECCHHH----HHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEecc
Confidence 577899988 667788999999999999999877643
No 11
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=34.35 E-value=22 Score=31.49 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCeeeec
Q 036748 109 MGKNMTAGEANRYAEDAVKR-FLEAGKAAIRAGANESAIVTMR 150 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~-fl~~~~~a~~~g~d~~~iv~~~ 150 (169)
.+..||..| |++.++. |.+++++|+++|.|.=+|-.-.
T Consensus 153 ~pr~lt~~e----I~~ii~~~~~~aa~~a~~aGfdgveih~~~ 191 (407)
T 3tjl_A 153 PVRALTTQE----VKDLVYEAYTNAAQKAMDAGFDYIELHAAH 191 (407)
T ss_dssp CCEECCHHH----HHHHHHTHHHHHHHHHHHTTCSEEEEECCT
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHHhCCCeEEECCcc
Confidence 467888887 4566778 9999999999999987776543
No 12
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=33.36 E-value=33 Score=30.89 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIV 147 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv 147 (169)
.+..||..| |++-++.|.+++++|+++|.|.=+|-
T Consensus 127 ~p~~~t~~e----i~~~i~~~~~aA~~a~~aGfd~veih 161 (671)
T 1ps9_A 127 VPHELSHEE----ILQLIDNFARCAQLAREAGYDGVEVM 161 (671)
T ss_dssp CCEECCHHH----HHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 577899998 66677889999999999999987753
No 13
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=32.63 E-value=27 Score=32.08 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++-++.|.+++++|+++|.|.=+|-.
T Consensus 135 ~p~~~t~~e----I~~~i~~f~~aA~~a~~aGfDgVEih~ 170 (729)
T 1o94_A 135 YCKEMDLSD----IAQVQQFYVDAAKRSRDAGFDIVYVYG 170 (729)
T ss_dssp BCEECCHHH----HHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 478899988 677788999999999999999877654
No 14
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=32.53 E-value=28 Score=31.54 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIV 147 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv 147 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-
T Consensus 142 ~p~~~t~~e----i~~~i~~f~~aA~~a~~aGfDgVeih 176 (690)
T 3k30_A 142 QARAMTKQD----IDDLRRWHRNAVRRSIEAGYDIVYVY 176 (690)
T ss_dssp BCEECCHHH----HHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 578899988 66777889999999999999987773
No 15
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Probab=30.67 E-value=72 Score=26.87 Aligned_cols=70 Identities=16% Similarity=0.080 Sum_probs=45.7
Q ss_pred CCCCCCCCCCccccccCCC--CCC---------CCCCCccHHHHHHHHHHHhhcCCcccccCCCCCCCCCHHHHHHHHHH
Q 036748 56 TPRDDCPVTLPEVTRSLRP--WGP---------REDKELSEFQVELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAED 124 (169)
Q Consensus 56 tPRtDcP~~Lp~p~~s~r~--~~~---------~~~a~LseFQ~eLv~lAa~Lngdh~~~~~p~~~~~mtv~ea~~yv~~ 124 (169)
+|+..+|...+.|.. ... ..+ ....-.|+-+.++++-|+.+...-+......+..+||..|....+++
T Consensus 39 ~~~~~~p~~i~~p~y-~~~~~~~~~~~~~~~~~~~~~iKs~~EI~~mR~A~~ia~~al~~~~~~i~pGvte~el~~~~~~ 117 (329)
T 2b3h_A 39 MPTRPVPSYIQRPDY-ADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHL 117 (329)
T ss_dssp CCCCCCCTTSCCCGG-GGSTTCCCHHHHHTTTCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTCBHHHHHHHHHH
T ss_pred CCccCCCcccCChhh-cccccCCCchhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 667789988888865 322 121 12336788899999999888744333333337889998887665555
Q ss_pred HH
Q 036748 125 AV 126 (169)
Q Consensus 125 av 126 (169)
.+
T Consensus 118 ~~ 119 (329)
T 2b3h_A 118 AC 119 (329)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 16
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=30.43 E-value=28 Score=30.62 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++.++.|-+++++|+++|.|.=+|-.
T Consensus 156 ~pr~mt~~e----I~~ii~~F~~AA~rA~~AGfDgVEIH~ 191 (419)
T 3l5a_A 156 VVIAMSHEK----INSIIQQYRDATLRAIKAGFDGVEISI 191 (419)
T ss_dssp EEEECCHHH----HHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 467899888 556678899999999999999877654
No 17
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=29.77 E-value=34 Score=29.18 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIV 147 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv 147 (169)
.++.||..|- ++.+..|.+++++|+++|.|.=+|-
T Consensus 147 ~p~~mt~~eI----~~~i~~f~~aA~~a~~aGfDgVeih 181 (365)
T 2gou_A 147 VPRAMTKADI----AQVIADYRQAALNAMEAGFDGIELH 181 (365)
T ss_dssp CCEECCHHHH----HHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcCCHHHH----HHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5778999875 4567789999999999999987763
No 18
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=28.59 E-value=70 Score=21.33 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 036748 111 KNMTAGEANRYAEDAVKR 128 (169)
Q Consensus 111 ~~mtv~ea~~yv~~av~~ 128 (169)
-+|||.||..++++.+.+
T Consensus 6 HGl~v~eA~~~l~~~l~~ 23 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEK 23 (82)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 379999999777654443
No 19
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=27.07 E-value=46 Score=30.00 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 88 VELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 88 ~eLv~lAa~Lngdh~~~~~p~~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.++..+++..+...+.--....++.|....+.+-+.+..+-|.+.-++|+++|++.+.|+-
T Consensus 305 ~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~Iil 365 (442)
T 3mcm_A 305 EQKAQLIAKYNKKYVIIHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNIYF 365 (442)
T ss_dssp HHHHHHHHHHTCEEEEECC----------------CTHHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred hHHHHHHHHhCCeEEEECCCCCCccccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 5788888887655543211115566653334455666666667777889999999988763
No 20
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=24.62 E-value=58 Score=25.49 Aligned_cols=52 Identities=27% Similarity=0.252 Sum_probs=38.9
Q ss_pred CCccHHHHHHHHHHHhhc---CCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036748 81 KELSEFQVELIQLAAQLV---GDYVLNTYPNMGKNMTAGEANRYAEDAVKRFLEAGKA 135 (169)
Q Consensus 81 a~LseFQ~eLv~lAa~Ln---gdh~~~~~p~~~~~mtv~ea~~yv~~av~~fl~~~~~ 135 (169)
..+.+.|.||-+.|+.|| ++=+... .+.-+-.+++.+=...++..|++.+..
T Consensus 34 ~~~~~~Q~eL~~aA~~Ln~A~~~vv~aa---rgsp~~La~as~~f~~~~~~l~~ag~~ 88 (158)
T 2l10_A 34 GTFQEAQSRLNEAAAGLNQAATELVQAS---RGTPQDLARASGRFGQDFSTFLEAGVE 88 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999 3333332 344456678888888899999998663
No 21
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=24.59 E-value=63 Score=22.11 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 111 KNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 111 ~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
-+||+.||. +++.+|++. |...|...=.||+
T Consensus 10 hG~~~~eA~----~~l~~fl~~---a~~~g~~~v~IIH 40 (83)
T 2zqe_A 10 RGLTVAEAL----LEVDQALEE---ARALGLSTLRLLH 40 (83)
T ss_dssp TTCCHHHHH----HHHHHHHHH---HHHTTCSEEEEEC
T ss_pred CCCCHHHHH----HHHHHHHHH---HHHCCCCEEEEEE
Confidence 579999997 466677776 5566665544443
No 22
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=24.05 E-value=72 Score=24.30 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=30.6
Q ss_pred CccHHHHHHHHHHHhhc----CCcccccCCCCCCCCCHHHHHHHHHH
Q 036748 82 ELSEFQVELIQLAAQLV----GDYVLNTYPNMGKNMTAGEANRYAED 124 (169)
Q Consensus 82 ~LseFQ~eLv~lAa~Ln----gdh~~~~~p~~~~~mtv~ea~~yv~~ 124 (169)
.|+.-+.++|+-+-... |+.|...+.-+...+|+.||.+++++
T Consensus 36 ~l~~~e~~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~ 82 (205)
T 3kxr_A 36 QMGERQRQRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRR 82 (205)
T ss_dssp HSCHHHHHHHHHHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHh
Confidence 35666777776655554 66665555558899999999998876
No 23
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=23.92 E-value=43 Score=28.83 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeee
Q 036748 109 MGKNMTAGEANRYAEDAVKRFLEAGKAAIRAGANESAIVT 148 (169)
Q Consensus 109 ~~~~mtv~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~ 148 (169)
.+..||..| |++.++.|.+++++|+++|.|.=+|-.
T Consensus 147 ~pr~mt~~e----I~~ii~~f~~AA~~A~~aGfDgVEih~ 182 (361)
T 3gka_A 147 TPRALELDE----IPGVVAAFRRGAENARAAGFDGVEVHG 182 (361)
T ss_dssp CCEECCGGG----HHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 467788887 556677899999999999999877654
No 24
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=23.15 E-value=57 Score=27.72 Aligned_cols=64 Identities=23% Similarity=0.422 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCccccc--------------CCC--CCCCCCHHHHHHH----HHHHHHHHHH-HHHHHHHhCCCCCCe
Q 036748 88 VELIQLAAQLVGDYVLNT--------------YPN--MGKNMTAGEANRY----AEDAVKRFLE-AGKAAIRAGANESAI 146 (169)
Q Consensus 88 ~eLv~lAa~Lngdh~~~~--------------~p~--~~~~mtv~ea~~y----v~~av~~fl~-~~~~a~~~g~d~~~i 146 (169)
.+|..+++..+-..+.-- +|+ -+..||.++...| +.+.+..|++ ..++|.++|++.+.|
T Consensus 119 ~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~~a~~~GI~~~~I 198 (314)
T 2vef_A 119 EKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALARAAEAGIAPENI 198 (314)
T ss_dssp TTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred hHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence 478888887763332211 111 1233444554556 6665556654 467888999999888
Q ss_pred eeecCC
Q 036748 147 VTMRPS 152 (169)
Q Consensus 147 v~~~~~ 152 (169)
+ +.|.
T Consensus 199 i-lDPG 203 (314)
T 2vef_A 199 L-LDPG 203 (314)
T ss_dssp E-EECC
T ss_pred E-EeCC
Confidence 8 5554
No 25
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A
Probab=22.89 E-value=1.4e+02 Score=24.02 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=44.4
Q ss_pred CCCCCCCCCCccccccCCCC-CCC--CCCCccHHHHHHHHHHHhhcCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 036748 56 TPRDDCPVTLPEVTRSLRPW-GPR--EDKELSEFQVELIQLAAQLVGDYVLNTYPNMGKNMTAGEANRYAEDAV 126 (169)
Q Consensus 56 tPRtDcP~~Lp~p~~s~r~~-~~~--~~a~LseFQ~eLv~lAa~Lngdh~~~~~p~~~~~mtv~ea~~yv~~av 126 (169)
+|+..-|.-.+.|.. .... ... .-+--|+...++++-|+.+...-+......+..+||..|....++..+
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~R~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~el~~~~~~~~ 85 (285)
T 3pka_A 13 SPTRPVPNWIARPEY-VGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYL 85 (285)
T ss_dssp CCCCCCCTTSCCCTT-TTSSSCSCSCSCSBCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTCBHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCCcc-cccCCCCcccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 466677777777764 2221 111 123568888899999988874444433334788999988777665443
No 26
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=22.46 E-value=94 Score=26.69 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=39.1
Q ss_pred HHHHHHHhhcCCcccccCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeeecCC
Q 036748 89 ELIQLAAQLVGDYVLNTYPNMGKNMT-AGEANRYAEDAVKRFLEAGKAAIRAGANESAIVTMRPS 152 (169)
Q Consensus 89 eLv~lAa~Lngdh~~~~~p~~~~~mt-v~ea~~yv~~av~~fl~~~~~a~~~g~d~~~iv~~~~~ 152 (169)
++..+++..+...+.--....++.|. -..+ +-+.+.+.-|.+.-++|+++|++.+.|+ +.|.
T Consensus 139 ~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~y-dvv~ev~~~l~~~i~~a~~~GI~~~~Ii-lDPG 201 (314)
T 3tr9_A 139 DALTTVSALKTPVCLMHFPSETRKPGSTTHF-YFLQSVKKELQESIQRCKKAGISEDRII-IDPG 201 (314)
T ss_dssp THHHHHHHHTCCEEEECCCCTTCCTTSSCHH-HHHHHHHHHHHHHHHHHHHTTCCGGGEE-EECC
T ss_pred HHHHHHHHhCCeEEEECCCCCCccccccccc-chHHHHHHHHHHHHHHHHHcCCCHhHEE-EeCC
Confidence 67888887765544321111344442 1123 5677777777777889999999998887 4443
No 27
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=21.97 E-value=1.2e+02 Score=23.43 Aligned_cols=14 Identities=57% Similarity=0.646 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHHH
Q 036748 111 KNMTAGEANRYAED 124 (169)
Q Consensus 111 ~~mtv~ea~~yv~~ 124 (169)
++|++.||..|+++
T Consensus 37 rG~~v~~A~~~L~~ 50 (155)
T 1vq8_R 37 KGKTAGEAVDYLEA 50 (155)
T ss_dssp TTSBHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHH
Confidence 56777777777777
No 28
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=21.81 E-value=33 Score=20.75 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=10.3
Q ss_pred CCccHHHHHHHH
Q 036748 81 KELSEFQVELIQ 92 (169)
Q Consensus 81 a~LseFQ~eLv~ 92 (169)
.+||..|+||++
T Consensus 3 skLs~LQ~eLL~ 14 (32)
T 1g2y_A 3 SKLSQLQTEMLA 14 (32)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 369999999986
No 29
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=20.08 E-value=77 Score=22.45 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCeeeecC
Q 036748 124 DAVKRFLEAGKAAIRAGANESAIVTMRP 151 (169)
Q Consensus 124 ~av~~fl~~~~~a~~~g~d~~~iv~~~~ 151 (169)
++.++|++. |++.|.+.+.|+.+..
T Consensus 121 e~~~~f~~~---~~~~G~~~~~ii~~~~ 145 (151)
T 1e5p_A 121 EENEILVQF---AHEKKIPVENILNILA 145 (151)
T ss_dssp HHHHHHHHH---HHHTTCCGGGEEECGG
T ss_pred HHHHHHHHH---HHHcCCCHHHEEECCc
Confidence 456677665 6689999999998754
Done!