BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036751
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 229/413 (55%), Gaps = 32/413 (7%)
Query: 63 LYYDQTLDHFNYNPESYLTFPQRYVLNFKHWXXXXXXXXXPILAYLGEESSLDDDLRGIG 122
LY+ Q +DHF +N + TF QRY++ K+W IL Y G E + G
Sbjct: 6 LYFQQKVDHFGFN--TVKTFNQRYLVADKYWKKNGGS----ILFYTGNEGDIIWFCNNTG 59
Query: 123 WLSDNAHRFKALQVYIEHRFYGKSVPFVSSEDALKNATLRGYFNSAQALADYAEILLHIK 182
++ D A KA+ V+ EHR+YG+S+PF +++ K++ + S QALAD+AE++ H+K
Sbjct: 60 FMWDVAEELKAMLVFAEHRYYGESLPF--GDNSFKDSRHLNFLTSEQALADFAELIKHLK 117
Query: 183 EKL-SAKTSPIIVVGGSYGGMLAAWFRLKYPHIALGAVASSAPVLYFDKITPSDAYYSRV 241
+ A+ P+I +GGSYGGMLAAWFR+KYPH+ +GA+A+SAP+ F+ + P + V
Sbjct: 118 RTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIV 177
Query: 242 TKDFREASESCYATIKRSWAAIDKAGAKRNGLAFLSKKFKTCKPLKS--VSELKDYLENM 299
T DFR++ C +I RSW AI++ +GL +L+ C PL S + LKD++
Sbjct: 178 TTDFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISET 237
Query: 300 YTVAAQYDRP---------PNYPVNQVCNGIDGASQGTDTVAR-IFSGIVA---SRGKKS 346
+ A D P P +P+ VC + + + + IF + G+
Sbjct: 238 WVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVK 297
Query: 347 CYNIGEFFSDE--TLNGWGWQTCSEIVMPIGIGKNKTMFPADPFNLKEYMDSCENSYGVV 404
C NI E + TL GW +Q C+E+VMP MF +NLKE D C +GV
Sbjct: 298 CLNISETATSSLGTL-GWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVR 356
Query: 405 PRPHWITTYYGGLDIRVVLKSFGSNIIFSNGLRDPYSTAGVLEDISDSIIALV 457
PRP WITT YGG +I S +NI+FSNG DP+S GV +DI+D+++A+
Sbjct: 357 PRPSWITTMYGGKNI-----SSHTNIVFSNGELDPWSGGGVTKDITDTLVAVT 404
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/456 (32%), Positives = 226/456 (49%), Gaps = 64/456 (14%)
Query: 64 YYDQTLDHFNYNPESYLTFPQRYVLNFKHWXXXXXXXXXPILAYLGEESSLDDDLRGIGW 123
++ Q LDHFN+ TFPQR++++ + W PI Y G E + +
Sbjct: 12 FFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEG----PIFFYTGNEGDVWAFANNSAF 67
Query: 124 LSDNAHRFKALQVYIEHRFYGKSVPFVSSEDALKNATLRGY---FNSAQALADYAEILLH 180
+++ A AL V+ EHR+YGKS+PF + +T RG+ QALAD+AE+L
Sbjct: 68 VAELAAERGALLVFAEHRYYGKSLPFGA------QSTQRGHTELLTVEQALADFAELLRA 121
Query: 181 IKEKLSAKTSPIIVVGGSYGGMLAAWFRLKYPHIALGAVASSAPVLYFDKITPSDAYYSR 240
++ L A+ +P I GGSYGGML+A+ R+KYPH+ GA+A+SAPVL + S+ ++
Sbjct: 122 LRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRD 181
Query: 241 VTKDFREASESCYATIKRSWAAIDKAGAKRNGLAFLSKKFKTCKPL---KSVSELKDYLE 297
VT DF S C ++ ++ I K + + +F TC+PL K +++L +
Sbjct: 182 VTADFEGQSPKCTQGVREAFRQI-KDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFAR 240
Query: 298 NMYTVAAQYDRP---------PNYPVNQVCNGIDGASQGTDTVARIFSGIV-ASRGKKSC 347
N +TV A D P P PV C+ + +Q T R +G+V + G + C
Sbjct: 241 NAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRI-TGLRALAGLVYNASGSEHC 299
Query: 348 YNIGEFF---SDETLNG-------WGWQTCSEIVMPIGIGKNKTMFPADPFNLKEYMDSC 397
Y+I + +D T G W +Q C+EI + MFP PF + C
Sbjct: 300 YDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYC 359
Query: 398 ENSYGVVPRPHWITTYYGGLDIRVVLKSFGSNIIFSNGLRDPYSTAGVLEDISDSIIAL- 456
+++GV PRP W+ T + G D+R SNIIFSNG DP++ G+ ++S S+IA+
Sbjct: 360 LDTWGVWPRPDWLLTSFWGGDLRAA-----SNIIFSNGNLDPWAGGGIRRNLSASVIAVT 414
Query: 457 --------------------VQKMRQIEVNIVHAWI 472
V + R++E I+ W+
Sbjct: 415 IQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWV 450
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 214 bits (545), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 225/464 (48%), Gaps = 64/464 (13%)
Query: 56 PKSDLKTLYYDQTLDHFNYNPESYLTFPQRYVLNFKHWXXXXXXXXXPILAYLGEESSLD 115
P + ++ Q LDHFN+ TFPQR++++ + W PI Y G E +
Sbjct: 1 PDPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEG----PIFFYTGNEGDVW 56
Query: 116 DDLRGIGWLSDNAHRFKALQVYIEHRFYGKSVPFVSSEDALKNATLRGY---FNSAQALA 172
++++ A AL V+ EHR+YGKS+PF + +T RG+ QALA
Sbjct: 57 AFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGA------QSTQRGHTELLTVEQALA 110
Query: 173 DYAEILLHIKEKLSAKTSPIIVVGGSYGGMLAAWFRLKYPHIALGAVASSAPVLYFDKIT 232
D+AE+L ++ L A+ +P I GGSYGG L+A+ R KYPH+ GA+A+SAPVL +
Sbjct: 111 DFAELLRALRRDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLG 170
Query: 233 PSDAYYSRVTKDFREASESCYATIKRSWAAIDKAGAKRNGLAFLSKKFKTCKPL---KSV 289
S+ ++ VT DF S C ++ ++ I K + + +F TC+PL K +
Sbjct: 171 DSNQFFRDVTADFEGQSPKCTQGVREAFRQI-KDLFLQGAYDTVRWEFGTCQPLSDEKDL 229
Query: 290 SELKDYLENMYTVAAQYDRP---------PNYPVNQVCNGIDGASQGTDTVARIFSGIV- 339
++L + N +TV A D P P PV C+ + +Q T R +G+V
Sbjct: 230 TQLFXFARNAFTVLAXXDYPYPTDFLGPLPANPVKVGCDRLLSEAQRI-TGLRALAGLVY 288
Query: 340 ASRGKKSCYNIGEFF---SDETLNG-------WGWQTCSEIVMPIGIGKNKTMFPADPFN 389
+ G + CY+I + +D T G W +Q C+EI + FP PF
Sbjct: 289 NASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDXFPDLPFT 348
Query: 390 LKEYMDSCENSYGVVPRPHWITTYYGGLDIRVVLKSFGSNIIFSNGLRDPYSTAGVLEDI 449
+ C +++GV PRP W+ T + G D+R SNIIFSNG DP++ G+ ++
Sbjct: 349 DELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAA-----SNIIFSNGNLDPWAGGGIRRNL 403
Query: 450 SDSIIAL---------------------VQKMRQIEVNIVHAWI 472
S S+IA+ V + R++E I+ W+
Sbjct: 404 SASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWV 447
>pdb|3BDV|A Chain A, Crystal Structure Of A Putative Yden-Like Hydrolase
(Eca3091) From Pectobacterium Atrosepticum Scri1043 At
1.66 A Resolution
pdb|3BDV|B Chain B, Crystal Structure Of A Putative Yden-Like Hydrolase
(Eca3091) From Pectobacterium Atrosepticum Scri1043 At
1.66 A Resolution
Length = 191
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 172 ADYAEILLHIKEKLSAKTSPIIVVGGSYGGMLA 204
AD +L I+ +LS T P+I++G S+G + A
Sbjct: 56 ADLDRWVLAIRRELSVCTQPVILIGHSFGALAA 88
>pdb|1VJU|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|1VJU|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|3DWS|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWS|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 297 ENMYTVAAQYDRPPNYPVNQVCNGIDGASQGTDTVARIFSGIVASRGKKSC--------- 347
E ++ +D P Y V + C +Q + + F V +R K C
Sbjct: 129 EPVWWFGGGFDLTPYYAVEEDCRDFHQVAQ---DLCKPFGADVYARFKGWCDEYFFIPYR 185
Query: 348 ---YNIGEFFSDETLNGWGWQTCSEIVMPIGIGKNKTMFP 384
IG F D+ LN W ++ C E V +G G P
Sbjct: 186 NEARGIGGLFFDD-LNEWPFEKCFEFVQAVGKGYXDAYIP 224
>pdb|3E59|A Chain A, Crystal Structure Of The Pvca (Pa2254) Protein From
Pseudomonas Aeruginosa
pdb|3E59|B Chain B, Crystal Structure Of The Pvca (Pa2254) Protein From
Pseudomonas Aeruginosa
pdb|3E59|C Chain C, Crystal Structure Of The Pvca (Pa2254) Protein From
Pseudomonas Aeruginosa
pdb|3E59|D Chain D, Crystal Structure Of The Pvca (Pa2254) Protein From
Pseudomonas Aeruginosa
Length = 330
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 226 LYFDKITPSDAYYSRVTKDFREASESCYATIKRSWA 261
LY D +TP Y T R+A E Y I+RSWA
Sbjct: 206 LYEDGLTPD--YQGSKTALQRDAKERAYGVIQRSWA 239
>pdb|3DWR|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWR|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 297 ENMYTVAAQYDRPPNYPVNQVCNGIDGASQGTDTVARIFSGIVASRGKKSC--------- 347
E ++ +D P Y V + C +Q + + F V +R K C
Sbjct: 129 EPVWWFGGGFDLTPYYAVEEDCRDFHQVAQ---DLCKPFGADVYARFKGWCDEYFFIPYR 185
Query: 348 ---YNIGEFFSDETLNGWGWQTCSEIVMPIGIGKNKTMFP 384
IG F D+ LN W ++ C E V +G G P
Sbjct: 186 NEARGIGGLFFDD-LNEWPFEKCFEFVQAVGKGYMDAYIP 224
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 276 LSKKFKTCKPLKSVSE-------LKDYLENMYTVAAQYDRPPNYP--VNQVCNGIDGASQ 326
L+ KF++C + ++ LKD ++T ++ + PPN+P + +C+ +D Q
Sbjct: 138 LANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQ 197
Query: 327 GTDT 330
GT++
Sbjct: 198 GTNS 201
>pdb|3PPB|A Chain A, Crystal Structure Of A Putative Tetr Family Transcription
Regulator (Shew_3104) From Shewanella Sp. Pv-4 At 2.10 A
Resolution
pdb|3PPB|B Chain B, Crystal Structure Of A Putative Tetr Family Transcription
Regulator (Shew_3104) From Shewanella Sp. Pv-4 At 2.10 A
Resolution
Length = 195
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 133 ALQVYIEHRFYGKSVPFVSSEDALKNATLRGYFNSAQALADYAEILLHIKEKLS 186
ALQ+++ F+G S ++ E + TL +F S + L + ++ L +K++ +
Sbjct: 18 ALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLE--QLFLGVKQEFA 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,854,371
Number of Sequences: 62578
Number of extensions: 619185
Number of successful extensions: 1596
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 9
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)