BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036753
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 4 AFISPLLQQLTSMAVEEAKEQVRLVTGVGKEVEKLTSNLRAIQAVLHDAEK--RQVKDET 61
A IS L+ +L + EE K L GV K +E L L + A L + R+ D
Sbjct: 1 AAISNLIPKLGELLTEEFK----LHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 62 VKLWLDQLRDACYDMEDVLGEWSTARLKLQIDGVDDDPENDVLVCLEKVCS 112
KLW D++R+ Y +EDV+ ++ +Q+DG+ D N+ L K +
Sbjct: 57 DKLWADEVRELSYVIEDVVDKFL-----VQVDGIKSDDNNNKFKGLXKRTT 102
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 418 GNVTGLRGLRSLLVKSDEYSWSS-EGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476
G GL L+SL ++ W+ LP L L++L++ RNS + +
Sbjct: 177 GEHQGLVNLQSLRLE-----WTGIRSLPASIANLQNLKSLKI-------RNSPLSALGPA 224
Query: 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHN 536
I L L+ L+L+G + N P L+ L + DC NL LP I +L +L L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 537 EDTGCLRYLPAGIGEL 552
L LP+ I +L
Sbjct: 285 RGCVNLSRLPSLIAQL 300
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 445 QLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPETLCE 503
Q FE L+ ++RE W RN+ I+ IP+ ++ L+ L+L K++E + E E
Sbjct: 101 QAFEYLS-------KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 504 -LYNLECLNVDDCQNLRELPRGIGKLR 529
L NL LN+ C NL+++P +R
Sbjct: 154 GLVNLRYLNLGMC-NLKDIPNLTALVR 179
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 459 QVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPETLCE-LYNLECLNVDDCQ 516
++RE W RN+ I+ IP+ ++ L L+L KK+E + E E L+NL+ LN+ C
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC- 206
Query: 517 NLRELP 522
N++++P
Sbjct: 207 NIKDMP 212
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 445 QLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPETLCE 503
Q FE L+ ++RE W RN+ I+ IP+ ++ L+ L+L K++E + E E
Sbjct: 101 QAFEYLS-------KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 504 -LYNLECLNVDDCQNLRELPRGIGKLR 529
L NL LN+ C NL+++P +R
Sbjct: 154 GLVNLRYLNLGMC-NLKDIPNLTALVR 179
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 435 EYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKI 494
+++ S +P L+ LR L+L + N L EIP + + L+ L L
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWL------NMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 495 ENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGE 551
+P L NL +++ + + E+P+ IG+L L L + +PA +G+
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 435 EYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKI 494
+++ S +P L+ LR L+L W N L EIP + + L+ L L
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKL-----W-LNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 495 ENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGE 551
+P L NL +++ + + E+P+ IG+L L L + +PA +G+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 389 LAISSFEEKKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFE 448
+ ++SF+ + L + L L R I I G GL L +L + + + G
Sbjct: 79 IKVNSFKHLRHLEI-LQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136
Query: 449 KLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPETLCE-LYN 506
KL +E W RN+ I+ IP+ ++ L+ L+L K++ + E E L N
Sbjct: 137 KL----------KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 507 LECLNVDDCQNLRELP 522
L LN+ C NLRE+P
Sbjct: 187 LRYLNLAMC-NLREIP 201
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 11/52 (21%)
Query: 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLA-QFAY 226
++S +FG KE K + D++ P +I LVG+ G GKTT A + AY
Sbjct: 79 ELSNLFGGDKEPKVIPDKI----------PYVIMLVGVQGTGKTTTAGKLAY 120
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 483 LKYLNLKGQKKIEN-LPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGC 541
L+ L + G EN LP+ EL NL L++ CQ + P L L L N +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL-NMASNQ 505
Query: 542 LRYLPAGIGE-LIRLRRV 558
L+ +P GI + L L+++
Sbjct: 506 LKSVPDGIFDRLTSLQKI 523
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 24/162 (14%)
Query: 346 FQDFDKGDDGEIYKCKMHD-------IVHDFAQYLCRNECLAVEIHSGEELAISS---FE 395
F DF + D G+ + C M D I H R I+ + SS F
Sbjct: 491 FVDFSQVD-GQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFA 549
Query: 396 EKKILHLPLT---LRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTC 452
+ + PLT LRR P+ N+ L L ++ D Y W S +F +
Sbjct: 550 RQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASL 609
Query: 453 LRALELQVRESWPRNSLIKEIPTNIEKLLHL----KYLNLKG 490
+R L+ ++ + +I++ NI KL+ + K LNL+G
Sbjct: 610 IRDLQKEL------DGIIQDGVHNITKLIKMSETHKLLNLEG 645
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGK-TTLAQFAY 226
++S +FG KE K + D++ P +I LVG+ G GK TT + AY
Sbjct: 79 ELSNLFGGDKEPKVIPDKI----------PYVIMLVGVQGTGKATTAGKLAY 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,806,670
Number of Sequences: 62578
Number of extensions: 877586
Number of successful extensions: 2413
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2401
Number of HSP's gapped (non-prelim): 32
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)