Query 036753
Match_columns 725
No_of_seqs 477 out of 3695
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-69 8E-74 612.0 31.2 573 2-621 1-730 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.4E-43 1.2E-47 420.6 31.2 487 176-716 182-843 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.7E-21 3.6E-26 235.1 12.7 259 422-717 116-375 (968)
4 PF00931 NB-ARC: NB-ARC domain 99.8 1.4E-21 3.1E-26 201.7 9.1 139 183-325 1-286 (287)
5 PLN00113 leucine-rich repeat r 99.8 8E-21 1.7E-25 229.2 12.1 277 422-716 162-446 (968)
6 KOG0444 Cytoskeletal regulator 99.8 1.6E-22 3.6E-27 208.9 -7.3 296 397-717 55-357 (1255)
7 PLN03210 Resistant to P. syrin 99.8 1.9E-19 4E-24 217.5 15.7 285 397-715 589-910 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 1.5E-21 3.3E-26 201.9 -5.9 297 397-721 32-338 (1255)
9 KOG4194 Membrane glycoprotein 99.7 1.9E-18 4.1E-23 178.2 0.1 285 384-707 159-448 (873)
10 KOG4194 Membrane glycoprotein 99.7 3.7E-18 7.9E-23 176.1 0.2 300 397-721 125-438 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 4.3E-19 9.3E-24 175.3 -9.1 253 422-722 66-320 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 6.8E-18 1.5E-22 166.9 -9.5 252 422-720 43-296 (565)
13 KOG0617 Ras suppressor protein 99.5 3.3E-16 7.2E-21 137.4 -6.1 183 477-714 29-215 (264)
14 PRK15370 E3 ubiquitin-protein 99.4 2.2E-13 4.8E-18 154.4 10.5 242 399-709 180-426 (754)
15 KOG4658 Apoptotic ATPase [Sign 99.4 5.9E-14 1.3E-18 161.4 4.5 255 422-715 521-787 (889)
16 KOG0617 Ras suppressor protein 99.4 2.3E-15 5E-20 132.2 -5.5 151 422-589 31-182 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 4.4E-12 9.4E-17 143.0 14.5 234 397-709 222-456 (788)
18 KOG0618 Serine/threonine phosp 99.4 3.6E-14 7.8E-19 154.8 -2.4 263 397-710 219-488 (1081)
19 KOG0618 Serine/threonine phosp 99.4 2.2E-14 4.7E-19 156.5 -5.5 246 423-713 218-466 (1081)
20 PRK15370 E3 ubiquitin-protein 99.3 1.8E-12 3.9E-17 147.0 8.4 229 424-718 178-407 (754)
21 PRK15387 E3 ubiquitin-protein 99.3 1.2E-11 2.5E-16 139.6 13.0 240 401-721 205-444 (788)
22 cd00116 LRR_RI Leucine-rich re 99.3 7.8E-13 1.7E-17 138.8 -0.4 268 422-709 21-318 (319)
23 KOG4237 Extracellular matrix p 99.2 3.3E-13 7.2E-18 134.0 -5.0 259 424-721 67-344 (498)
24 cd00116 LRR_RI Leucine-rich re 99.2 1.2E-12 2.7E-17 137.3 -1.2 244 444-709 16-289 (319)
25 KOG4237 Extracellular matrix p 99.1 1.6E-12 3.5E-17 129.1 -3.8 129 397-540 67-199 (498)
26 KOG0532 Leucine-rich repeat (L 98.8 2.1E-10 4.6E-15 119.4 -3.4 192 426-686 77-271 (722)
27 COG4886 Leucine-rich repeat (L 98.8 3.8E-09 8.2E-14 114.3 4.2 198 428-693 97-295 (394)
28 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.2E-13 93.2 5.4 129 422-566 17-153 (175)
29 PF14580 LRR_9: Leucine-rich r 98.6 7.2E-09 1.6E-13 96.1 0.6 106 447-564 15-124 (175)
30 KOG0532 Leucine-rich repeat (L 98.6 3.5E-09 7.6E-14 110.6 -2.9 152 422-590 119-270 (722)
31 KOG3207 Beta-tubulin folding c 98.6 1.8E-08 3.8E-13 102.3 2.1 158 397-566 121-284 (505)
32 KOG1259 Nischarin, modulator o 98.5 2.7E-08 5.8E-13 95.9 1.9 237 443-715 174-415 (490)
33 KOG3207 Beta-tubulin folding c 98.5 1.1E-08 2.4E-13 103.8 -1.9 210 448-686 118-337 (505)
34 KOG1909 Ran GTPase-activating 98.5 2.4E-08 5.1E-13 98.7 0.4 248 421-687 27-310 (382)
35 COG4886 Leucine-rich repeat (L 98.5 6.2E-08 1.3E-12 104.8 3.1 177 422-663 114-291 (394)
36 PLN03150 hypothetical protein; 98.4 5.5E-07 1.2E-11 102.2 8.3 102 452-559 419-521 (623)
37 PLN03150 hypothetical protein; 98.4 4.8E-07 1E-11 102.7 6.2 105 426-539 420-525 (623)
38 KOG2120 SCF ubiquitin ligase, 98.3 1.6E-08 3.4E-13 97.5 -5.9 77 605-701 310-390 (419)
39 KOG2120 SCF ubiquitin ligase, 98.3 4E-08 8.7E-13 94.8 -4.3 185 482-709 186-374 (419)
40 KOG1909 Ran GTPase-activating 98.3 3.7E-07 8.1E-12 90.4 2.3 247 444-709 23-309 (382)
41 KOG1259 Nischarin, modulator o 98.2 2.3E-07 5E-12 89.6 -0.8 129 422-566 282-412 (490)
42 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.2E-11 66.8 2.8 58 649-709 1-60 (61)
43 KOG4341 F-box protein containi 98.1 7.7E-08 1.7E-12 97.3 -5.5 265 421-713 161-441 (483)
44 PF13855 LRR_8: Leucine rich r 98.1 3.1E-06 6.7E-11 64.2 4.0 56 482-539 2-59 (61)
45 PRK15386 type III secretion pr 98.1 6.1E-06 1.3E-10 86.0 7.4 62 449-522 50-111 (426)
46 PRK09376 rho transcription ter 98.1 3.7E-06 8E-11 86.6 4.6 53 204-257 168-222 (416)
47 KOG0531 Protein phosphatase 1, 98.0 6.1E-07 1.3E-11 97.3 -1.8 237 422-709 70-316 (414)
48 KOG0531 Protein phosphatase 1, 98.0 1.1E-06 2.4E-11 95.4 -0.1 222 421-689 92-319 (414)
49 cd01128 rho_factor Transcripti 98.0 6.5E-06 1.4E-10 81.4 5.2 54 204-258 15-70 (249)
50 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.5E-10 55.9 3.7 39 482-522 2-40 (44)
51 KOG3665 ZYG-1-like serine/thre 97.9 6.1E-06 1.3E-10 93.5 2.8 158 481-659 122-285 (699)
52 KOG2982 Uncharacterized conser 97.8 1.2E-05 2.7E-10 78.0 2.2 82 607-706 198-287 (418)
53 PF12799 LRR_4: Leucine Rich r 97.6 6.3E-05 1.4E-09 52.2 3.4 41 451-499 1-41 (44)
54 KOG4341 F-box protein containi 97.6 4.7E-06 1E-10 84.6 -3.2 257 426-712 140-415 (483)
55 PRK08118 topology modulation p 97.6 3.3E-05 7.1E-10 72.0 2.5 52 206-258 2-58 (167)
56 TIGR02928 orc1/cdc6 family rep 97.6 0.00016 3.4E-09 77.4 8.0 81 177-261 14-100 (365)
57 PRK00411 cdc6 cell division co 97.6 0.00019 4.2E-09 77.6 8.5 83 176-262 28-112 (394)
58 PF13191 AAA_16: AAA ATPase do 97.6 0.00014 3E-09 69.4 6.4 46 180-228 2-47 (185)
59 PRK15386 type III secretion pr 97.5 7.9E-05 1.7E-09 77.9 4.7 117 422-562 50-186 (426)
60 PTZ00202 tuzin; Provisional 97.5 0.00046 1E-08 71.9 9.7 80 173-263 257-336 (550)
61 PRK11331 5-methylcytosine-spec 97.5 0.00033 7.2E-09 74.1 7.9 69 178-254 175-243 (459)
62 TIGR00767 rho transcription te 97.4 0.00012 2.7E-09 76.0 4.6 57 204-261 167-225 (415)
63 KOG1859 Leucine-rich repeat pr 97.4 8.5E-06 1.8E-10 88.1 -4.5 125 483-620 166-291 (1096)
64 KOG1859 Leucine-rich repeat pr 97.3 9.7E-06 2.1E-10 87.7 -5.3 82 446-539 182-264 (1096)
65 KOG3665 ZYG-1-like serine/thre 97.3 0.0002 4.3E-09 81.4 4.8 131 397-541 122-262 (699)
66 KOG4579 Leucine-rich repeat (L 97.3 4E-05 8.7E-10 66.0 -0.9 84 447-539 49-133 (177)
67 KOG4579 Leucine-rich repeat (L 97.2 3.4E-05 7.3E-10 66.4 -2.4 100 451-560 27-130 (177)
68 COG5238 RNA1 Ran GTPase-activa 97.1 0.00024 5.3E-09 68.3 2.6 242 447-709 26-314 (388)
69 PF05496 RuvB_N: Holliday junc 97.1 0.00062 1.3E-08 64.9 4.6 56 177-235 23-78 (233)
70 KOG2982 Uncharacterized conser 97.0 0.00034 7.3E-09 68.3 1.9 186 479-713 69-264 (418)
71 PF01637 Arch_ATPase: Archaeal 96.9 0.00079 1.7E-08 66.8 4.1 59 180-246 1-59 (234)
72 cd00009 AAA The AAA+ (ATPases 96.9 0.0022 4.7E-08 58.2 6.7 58 181-246 1-58 (151)
73 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00099 2.1E-08 68.7 4.5 50 179-228 52-101 (361)
74 PF13401 AAA_22: AAA domain; P 96.7 0.0018 4E-08 57.6 4.6 58 204-263 3-65 (131)
75 KOG2004 Mitochondrial ATP-depe 96.7 0.0058 1.3E-07 66.9 8.7 103 130-235 355-466 (906)
76 COG5238 RNA1 Ran GTPase-activa 96.7 0.00052 1.1E-08 66.1 0.7 244 422-686 28-314 (388)
77 PRK07261 topology modulation p 96.6 0.0029 6.3E-08 59.3 5.3 54 207-260 2-56 (171)
78 PF13207 AAA_17: AAA domain; P 96.6 0.0016 3.6E-08 57.1 3.2 21 207-227 1-21 (121)
79 PRK00080 ruvB Holliday junctio 96.6 0.0024 5.3E-08 66.9 4.7 51 177-228 24-74 (328)
80 TIGR00635 ruvB Holliday juncti 96.5 0.0017 3.6E-08 67.5 3.4 49 178-227 4-52 (305)
81 PRK07667 uridine kinase; Provi 96.5 0.0094 2E-07 57.1 8.2 38 186-227 2-39 (193)
82 KOG1644 U2-associated snRNP A' 96.4 0.003 6.4E-08 58.6 3.8 66 642-709 57-124 (233)
83 TIGR02903 spore_lon_C ATP-depe 96.4 0.033 7.1E-07 63.2 13.0 61 178-244 154-217 (615)
84 COG0466 Lon ATP-dependent Lon 96.4 0.008 1.7E-07 66.2 7.2 56 178-235 323-378 (782)
85 PRK06696 uridine kinase; Valid 96.3 0.0047 1E-07 60.7 4.9 42 183-227 3-44 (223)
86 KOG1644 U2-associated snRNP A' 96.3 0.0038 8.2E-08 57.9 3.7 61 477-539 60-123 (233)
87 TIGR03015 pepcterm_ATPase puta 96.2 0.014 3E-07 59.4 7.8 57 204-263 42-98 (269)
88 PTZ00301 uridine kinase; Provi 96.2 0.0062 1.3E-07 58.8 4.7 24 204-227 2-25 (210)
89 KOG2028 ATPase related to the 96.2 0.0062 1.3E-07 61.3 4.6 75 174-261 140-214 (554)
90 KOG2739 Leucine-rich acidic nu 96.2 0.0024 5.2E-08 61.7 1.7 62 447-516 61-127 (260)
91 KOG2739 Leucine-rich acidic nu 96.1 0.0021 4.6E-08 62.1 1.0 85 478-565 62-155 (260)
92 PF05659 RPW8: Arabidopsis bro 96.0 0.09 1.9E-06 47.3 11.1 83 2-84 3-86 (147)
93 COG2256 MGS1 ATPase related to 96.0 0.012 2.6E-07 60.5 6.0 50 175-235 27-76 (436)
94 PTZ00112 origin recognition co 96.0 0.015 3.2E-07 66.1 7.2 86 177-263 754-844 (1164)
95 PRK13342 recombination factor 95.9 0.011 2.3E-07 64.1 5.7 45 178-228 12-59 (413)
96 COG1618 Predicted nucleotide k 95.9 0.0074 1.6E-07 53.9 3.5 36 205-242 5-41 (179)
97 PRK15455 PrkA family serine pr 95.8 0.0071 1.5E-07 65.8 3.4 49 179-227 77-125 (644)
98 TIGR00763 lon ATP-dependent pr 95.8 0.045 9.7E-07 64.3 10.3 50 178-227 320-369 (775)
99 TIGR01242 26Sp45 26S proteasom 95.8 0.0072 1.6E-07 64.3 3.4 55 174-228 118-179 (364)
100 COG2255 RuvB Holliday junction 95.7 0.01 2.2E-07 58.1 3.9 55 178-235 26-80 (332)
101 PF00485 PRK: Phosphoribulokin 95.7 0.0076 1.6E-07 57.9 3.0 21 207-227 1-21 (194)
102 KOG1947 Leucine rich repeat pr 95.7 0.0013 2.9E-08 73.1 -2.6 17 603-619 357-373 (482)
103 PRK05480 uridine/cytidine kina 95.7 0.0089 1.9E-07 58.2 3.5 24 204-227 5-28 (209)
104 KOG2123 Uncharacterized conser 95.6 0.00093 2E-08 64.7 -3.5 100 422-535 17-123 (388)
105 PF00560 LRR_1: Leucine Rich R 95.6 0.0056 1.2E-07 35.3 1.0 19 483-502 2-20 (22)
106 KOG2123 Uncharacterized conser 95.6 0.0012 2.7E-08 63.8 -2.9 80 478-560 38-124 (388)
107 PRK05541 adenylylsulfate kinas 95.6 0.014 3.1E-07 55.0 4.3 36 204-241 6-41 (176)
108 PF05729 NACHT: NACHT domain 95.5 0.015 3.2E-07 54.0 4.3 41 206-246 1-45 (166)
109 TIGR00235 udk uridine kinase. 95.5 0.01 2.2E-07 57.6 3.1 24 204-227 5-28 (207)
110 PRK08233 hypothetical protein; 95.5 0.012 2.6E-07 55.8 3.4 23 205-227 3-25 (182)
111 PRK03992 proteasome-activating 95.5 0.0091 2E-07 63.9 2.8 54 175-228 128-188 (389)
112 PF13238 AAA_18: AAA domain; P 95.5 0.011 2.4E-07 52.3 2.9 21 208-228 1-21 (129)
113 COG1474 CDC6 Cdc6-related prot 95.3 0.049 1.1E-06 57.4 7.7 81 179-263 18-100 (366)
114 PRK10787 DNA-binding ATP-depen 95.3 0.045 9.8E-07 63.7 8.0 50 178-227 322-371 (784)
115 PRK06547 hypothetical protein; 95.2 0.024 5.3E-07 52.9 4.6 26 203-228 13-38 (172)
116 PRK04195 replication factor C 95.2 0.017 3.7E-07 63.9 4.0 50 177-228 13-62 (482)
117 cd02019 NK Nucleoside/nucleoti 95.2 0.014 3E-07 45.2 2.4 21 207-227 1-21 (69)
118 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.033 7.1E-07 54.9 5.6 54 183-244 22-75 (226)
119 COG0572 Udk Uridine kinase [Nu 95.2 0.016 3.4E-07 55.4 3.0 25 203-227 6-30 (218)
120 KOG2543 Origin recognition com 95.1 0.063 1.4E-06 54.9 7.2 78 176-261 4-81 (438)
121 PRK06762 hypothetical protein; 95.0 0.018 3.9E-07 53.7 3.1 23 205-227 2-24 (166)
122 KOG1947 Leucine rich repeat pr 95.0 0.0042 9.2E-08 69.1 -1.6 113 447-565 184-307 (482)
123 TIGR02881 spore_V_K stage V sp 94.9 0.034 7.3E-07 56.2 4.9 49 179-227 7-64 (261)
124 PF13173 AAA_14: AAA domain 94.9 0.025 5.5E-07 50.1 3.5 39 205-246 2-40 (128)
125 PRK09270 nucleoside triphospha 94.9 0.028 6.2E-07 55.5 4.2 25 203-227 31-55 (229)
126 PF12061 DUF3542: Protein of u 94.9 0.079 1.7E-06 52.4 7.0 76 4-84 296-373 (402)
127 PRK05564 DNA polymerase III su 94.8 0.067 1.5E-06 55.6 7.0 78 178-261 4-86 (313)
128 PF03205 MobB: Molybdopterin g 94.8 0.037 7.9E-07 49.8 4.3 39 206-245 1-39 (140)
129 PHA02544 44 clamp loader, smal 94.8 0.037 8.1E-07 57.7 5.1 47 177-228 20-66 (316)
130 PRK14963 DNA polymerase III su 94.8 0.029 6.4E-07 61.8 4.5 46 178-228 14-59 (504)
131 PRK12402 replication factor C 94.8 0.03 6.4E-07 59.1 4.4 44 178-227 15-58 (337)
132 PRK13341 recombination factor 94.7 0.031 6.8E-07 64.2 4.6 50 178-235 28-80 (725)
133 PRK04040 adenylate kinase; Pro 94.7 0.025 5.4E-07 53.8 3.2 23 205-227 2-24 (188)
134 PF01583 APS_kinase: Adenylyls 94.7 0.045 9.7E-07 49.8 4.5 35 205-241 2-36 (156)
135 cd02023 UMPK Uridine monophosp 94.6 0.02 4.4E-07 55.1 2.4 21 207-227 1-21 (198)
136 PF13671 AAA_33: AAA domain; P 94.6 0.028 6.1E-07 50.8 3.2 21 207-227 1-21 (143)
137 cd02024 NRK1 Nicotinamide ribo 94.6 0.02 4.3E-07 54.1 2.2 21 207-227 1-21 (187)
138 PRK10751 molybdopterin-guanine 94.6 0.033 7.2E-07 51.6 3.5 24 204-227 5-28 (173)
139 TIGR01360 aden_kin_iso1 adenyl 94.6 0.027 5.8E-07 53.7 3.1 24 204-227 2-25 (188)
140 CHL00095 clpC Clp protease ATP 94.6 0.033 7.1E-07 65.8 4.4 44 178-227 179-222 (821)
141 cd02025 PanK Pantothenate kina 94.5 0.021 4.5E-07 55.9 2.1 21 207-227 1-21 (220)
142 cd02028 UMPK_like Uridine mono 94.4 0.038 8.1E-07 52.2 3.6 21 207-227 1-21 (179)
143 PRK03839 putative kinase; Prov 94.4 0.028 6E-07 53.2 2.7 22 207-228 2-23 (180)
144 TIGR00554 panK_bact pantothena 94.4 0.059 1.3E-06 54.7 5.2 25 203-227 60-84 (290)
145 PF00560 LRR_1: Leucine Rich R 94.4 0.019 4.1E-07 33.0 0.9 21 506-527 1-21 (22)
146 TIGR03345 VI_ClpV1 type VI sec 94.3 0.041 9E-07 64.8 4.5 44 178-227 187-230 (852)
147 PRK00889 adenylylsulfate kinas 94.3 0.038 8.3E-07 52.0 3.5 25 204-228 3-27 (175)
148 PRK00440 rfc replication facto 94.3 0.05 1.1E-06 56.9 4.6 46 177-228 16-61 (319)
149 TIGR02237 recomb_radB DNA repa 94.3 0.087 1.9E-06 51.2 6.0 48 204-254 11-58 (209)
150 COG1428 Deoxynucleoside kinase 94.2 0.029 6.3E-07 52.8 2.4 25 204-228 3-27 (216)
151 TIGR00176 mobB molybdopterin-g 94.2 0.044 9.6E-07 50.2 3.4 34 207-242 1-35 (155)
152 PRK14961 DNA polymerase III su 94.2 0.062 1.3E-06 57.1 5.0 45 178-227 16-60 (363)
153 PRK03846 adenylylsulfate kinas 94.2 0.044 9.6E-07 52.7 3.6 25 203-227 22-46 (198)
154 PRK10536 hypothetical protein; 94.2 0.22 4.8E-06 49.1 8.3 45 176-228 53-97 (262)
155 CHL00181 cbbX CbbX; Provisiona 94.1 0.091 2E-06 53.6 5.9 49 179-227 24-81 (287)
156 PLN03025 replication factor C 94.1 0.098 2.1E-06 54.6 6.2 44 178-227 13-56 (319)
157 PRK13531 regulatory ATPase Rav 94.1 0.059 1.3E-06 58.0 4.5 41 179-227 21-61 (498)
158 PRK10865 protein disaggregatio 94.0 0.053 1.2E-06 64.1 4.6 44 178-227 178-221 (857)
159 PF00004 AAA: ATPase family as 94.0 0.036 7.7E-07 49.2 2.5 21 208-228 1-21 (132)
160 TIGR00150 HI0065_YjeE ATPase, 94.0 0.079 1.7E-06 46.8 4.5 40 185-228 6-45 (133)
161 TIGR02639 ClpA ATP-dependent C 94.0 0.053 1.2E-06 63.2 4.5 45 178-228 182-226 (731)
162 PRK00625 shikimate kinase; Pro 94.0 0.038 8.2E-07 51.7 2.7 21 207-227 2-22 (173)
163 TIGR02322 phosphon_PhnN phosph 94.0 0.04 8.7E-07 52.1 2.9 22 206-227 2-23 (179)
164 PF08298 AAA_PrkA: PrkA AAA do 93.9 0.073 1.6E-06 54.6 4.8 51 177-227 60-110 (358)
165 PHA00729 NTP-binding motif con 93.9 0.072 1.6E-06 51.5 4.5 25 204-228 16-40 (226)
166 PRK06893 DNA replication initi 93.9 0.051 1.1E-06 53.6 3.6 38 205-244 39-76 (229)
167 PRK00131 aroK shikimate kinase 93.9 0.044 9.5E-07 51.5 3.0 24 204-227 3-26 (175)
168 PRK08084 DNA replication initi 93.9 0.12 2.6E-06 51.2 6.1 38 205-244 45-82 (235)
169 PRK06217 hypothetical protein; 93.9 0.04 8.7E-07 52.3 2.6 22 207-228 3-24 (183)
170 TIGR03263 guanyl_kin guanylate 93.8 0.046 9.9E-07 51.7 2.9 22 206-227 2-23 (180)
171 COG1223 Predicted ATPase (AAA+ 93.8 0.064 1.4E-06 51.8 3.8 56 173-228 116-174 (368)
172 smart00382 AAA ATPases associa 93.8 0.047 1E-06 48.8 2.8 23 206-228 3-25 (148)
173 PRK14962 DNA polymerase III su 93.7 0.076 1.7E-06 58.1 4.8 45 178-227 14-58 (472)
174 PRK08903 DnaA regulatory inact 93.7 0.092 2E-06 51.8 5.0 25 204-228 41-65 (227)
175 COG3899 Predicted ATPase [Gene 93.7 0.11 2.4E-06 61.2 6.4 79 179-262 1-85 (849)
176 cd02020 CMPK Cytidine monophos 93.7 0.042 9E-07 49.9 2.3 21 207-227 1-21 (147)
177 TIGR00390 hslU ATP-dependent p 93.7 0.17 3.8E-06 53.4 7.1 80 179-260 13-104 (441)
178 KOG1532 GTPase XAB1, interacts 93.7 0.046 1E-06 53.1 2.6 27 203-229 17-43 (366)
179 COG2019 AdkA Archaeal adenylat 93.7 0.062 1.3E-06 48.4 3.2 24 204-227 3-26 (189)
180 PTZ00361 26 proteosome regulat 93.6 0.058 1.2E-06 58.1 3.6 52 177-228 182-240 (438)
181 PRK08727 hypothetical protein; 93.6 0.11 2.5E-06 51.3 5.5 38 206-245 42-79 (233)
182 COG1124 DppF ABC-type dipeptid 93.6 0.052 1.1E-06 52.3 2.9 24 204-227 32-55 (252)
183 PF00910 RNA_helicase: RNA hel 93.6 0.042 9.2E-07 46.8 2.1 21 208-228 1-21 (107)
184 PLN02318 phosphoribulokinase/u 93.6 0.08 1.7E-06 58.2 4.6 24 204-227 64-87 (656)
185 PRK05439 pantothenate kinase; 93.6 0.095 2.1E-06 53.6 4.9 25 203-227 84-108 (311)
186 PTZ00454 26S protease regulato 93.6 0.077 1.7E-06 56.7 4.4 54 175-228 142-202 (398)
187 TIGR00073 hypB hydrogenase acc 93.5 0.058 1.3E-06 52.3 3.1 25 203-227 20-44 (207)
188 COG1763 MobB Molybdopterin-gua 93.5 0.058 1.3E-06 49.3 2.8 23 205-227 2-24 (161)
189 PRK05201 hslU ATP-dependent pr 93.5 0.2 4.4E-06 52.9 7.2 80 179-260 16-107 (443)
190 PF07726 AAA_3: ATPase family 93.5 0.04 8.7E-07 47.8 1.7 27 208-236 2-28 (131)
191 cd01878 HflX HflX subfamily. 93.5 0.15 3.2E-06 49.3 5.9 25 204-228 40-64 (204)
192 COG1936 Predicted nucleotide k 93.4 0.059 1.3E-06 49.0 2.7 20 207-226 2-21 (180)
193 PF03193 DUF258: Protein of un 93.4 0.12 2.6E-06 47.2 4.7 36 185-229 24-59 (161)
194 cd00820 PEPCK_HprK Phosphoenol 93.3 0.072 1.6E-06 44.9 3.0 22 205-226 15-36 (107)
195 TIGR03689 pup_AAA proteasome A 93.3 0.11 2.5E-06 56.9 5.3 54 175-228 179-239 (512)
196 PRK00300 gmk guanylate kinase; 93.3 0.057 1.2E-06 52.3 2.8 25 204-228 4-28 (205)
197 COG3640 CooC CO dehydrogenase 93.3 0.12 2.7E-06 49.4 4.7 45 332-376 88-132 (255)
198 KOG3864 Uncharacterized conser 93.3 0.017 3.8E-07 53.7 -0.8 77 637-714 113-192 (221)
199 cd02021 GntK Gluconate kinase 93.3 0.054 1.2E-06 49.5 2.4 21 207-227 1-21 (150)
200 PF00158 Sigma54_activat: Sigm 93.3 0.094 2E-06 48.8 4.0 45 180-228 1-45 (168)
201 PRK10078 ribose 1,5-bisphospho 93.3 0.063 1.4E-06 51.1 2.9 23 206-228 3-25 (186)
202 PF01078 Mg_chelatase: Magnesi 93.3 0.13 2.9E-06 48.8 5.0 43 177-227 2-44 (206)
203 PRK11889 flhF flagellar biosyn 93.3 0.1 2.2E-06 54.6 4.6 24 204-227 240-263 (436)
204 PRK14957 DNA polymerase III su 93.3 0.098 2.1E-06 58.0 4.7 45 178-227 16-60 (546)
205 COG0003 ArsA Predicted ATPase 93.3 0.13 2.8E-06 52.9 5.3 49 205-255 2-50 (322)
206 cd01123 Rad51_DMC1_radA Rad51_ 93.2 0.13 2.8E-06 51.0 5.1 52 204-255 18-73 (235)
207 cd00227 CPT Chloramphenicol (C 93.2 0.064 1.4E-06 50.4 2.8 22 206-227 3-24 (175)
208 PRK05896 DNA polymerase III su 93.2 0.11 2.3E-06 57.9 4.8 45 178-227 16-60 (605)
209 TIGR01359 UMP_CMP_kin_fam UMP- 93.2 0.055 1.2E-06 51.3 2.3 21 207-227 1-21 (183)
210 COG0237 CoaE Dephospho-CoA kin 93.2 0.071 1.5E-06 50.9 3.1 22 205-226 2-23 (201)
211 TIGR03346 chaperone_ClpB ATP-d 93.1 0.095 2.1E-06 62.2 4.7 44 178-227 173-216 (852)
212 cd00464 SK Shikimate kinase (S 93.1 0.065 1.4E-06 49.1 2.7 20 208-227 2-21 (154)
213 PRK13949 shikimate kinase; Pro 93.1 0.064 1.4E-06 50.1 2.5 21 207-227 3-23 (169)
214 PRK14493 putative bifunctional 93.1 0.071 1.5E-06 53.8 3.0 28 206-235 2-29 (274)
215 PF00448 SRP54: SRP54-type pro 93.1 0.25 5.3E-06 47.3 6.6 57 205-263 1-58 (196)
216 PRK13947 shikimate kinase; Pro 93.0 0.065 1.4E-06 50.2 2.6 21 207-227 3-23 (171)
217 PF07728 AAA_5: AAA domain (dy 93.0 0.18 3.8E-06 45.3 5.3 42 208-255 2-44 (139)
218 cd02027 APSK Adenosine 5'-phos 92.9 0.067 1.4E-06 48.8 2.4 21 207-227 1-21 (149)
219 PF00005 ABC_tran: ABC transpo 92.9 0.088 1.9E-06 47.1 3.2 23 206-228 12-34 (137)
220 cd00071 GMPK Guanosine monopho 92.9 0.07 1.5E-06 47.8 2.4 21 207-227 1-21 (137)
221 PRK14960 DNA polymerase III su 92.9 0.12 2.6E-06 57.7 4.7 45 178-227 15-59 (702)
222 PRK14956 DNA polymerase III su 92.9 0.12 2.7E-06 55.7 4.6 45 178-227 18-62 (484)
223 PRK05057 aroK shikimate kinase 92.8 0.086 1.9E-06 49.4 3.0 23 205-227 4-26 (172)
224 PLN02348 phosphoribulokinase 92.8 0.092 2E-06 55.0 3.5 25 203-227 47-71 (395)
225 PF08477 Miro: Miro-like prote 92.8 0.082 1.8E-06 45.9 2.7 22 208-229 2-23 (119)
226 PRK13975 thymidylate kinase; P 92.8 0.082 1.8E-06 50.8 2.9 22 206-227 3-24 (196)
227 PRK09361 radB DNA repair and r 92.8 0.19 4.2E-06 49.4 5.6 47 204-253 22-68 (225)
228 PF06309 Torsin: Torsin; Inte 92.7 0.19 4.1E-06 43.6 4.7 49 179-227 26-75 (127)
229 PF03029 ATP_bind_1: Conserved 92.7 0.087 1.9E-06 52.1 3.0 19 210-228 1-19 (238)
230 PRK13236 nitrogenase reductase 92.7 0.093 2E-06 54.0 3.4 26 202-227 3-28 (296)
231 PF05621 TniB: Bacterial TniB 92.7 0.4 8.6E-06 48.4 7.6 74 185-263 44-123 (302)
232 cd03116 MobB Molybdenum is an 92.7 0.1 2.2E-06 48.0 3.1 22 206-227 2-23 (159)
233 KOG0727 26S proteasome regulat 92.6 0.21 4.5E-06 48.1 5.2 55 174-228 151-212 (408)
234 COG0529 CysC Adenylylsulfate k 92.6 0.11 2.4E-06 47.3 3.3 25 203-227 21-45 (197)
235 PF01926 MMR_HSR1: 50S ribosom 92.6 0.1 2.3E-06 45.1 3.1 21 208-228 2-22 (116)
236 PRK13695 putative NTPase; Prov 92.6 0.1 2.3E-06 49.0 3.3 22 207-228 2-23 (174)
237 cd01133 F1-ATPase_beta F1 ATP 92.6 0.1 2.3E-06 52.1 3.4 52 205-258 69-122 (274)
238 PRK11034 clpA ATP-dependent Cl 92.6 0.12 2.6E-06 59.8 4.4 43 179-227 187-229 (758)
239 cd01120 RecA-like_NTPases RecA 92.6 0.12 2.6E-06 47.7 3.7 39 207-247 1-39 (165)
240 TIGR00602 rad24 checkpoint pro 92.6 0.12 2.7E-06 58.1 4.4 53 175-228 81-133 (637)
241 cd01394 radB RadB. The archaea 92.5 0.24 5.2E-06 48.5 5.9 44 203-248 17-60 (218)
242 PF03308 ArgK: ArgK protein; 92.5 0.23 5E-06 48.7 5.5 38 186-227 14-51 (266)
243 COG1222 RPT1 ATP-dependent 26S 92.5 0.18 3.8E-06 51.4 4.8 55 174-228 147-208 (406)
244 COG0194 Gmk Guanylate kinase [ 92.5 0.12 2.7E-06 47.7 3.4 24 205-228 4-27 (191)
245 PRK09825 idnK D-gluconate kina 92.5 0.094 2E-06 49.3 2.8 23 206-228 4-26 (176)
246 TIGR01313 therm_gnt_kin carboh 92.5 0.075 1.6E-06 49.3 2.1 20 208-227 1-20 (163)
247 PF13504 LRR_7: Leucine rich r 92.5 0.079 1.7E-06 28.2 1.3 15 482-497 2-16 (17)
248 PF00308 Bac_DnaA: Bacterial d 92.4 0.9 2E-05 44.4 9.7 47 179-228 10-57 (219)
249 TIGR01287 nifH nitrogenase iro 92.4 0.084 1.8E-06 53.8 2.6 22 206-227 1-22 (275)
250 COG1072 CoaA Panthothenate kin 92.4 0.72 1.6E-05 45.6 8.7 34 202-237 79-112 (283)
251 COG4608 AppF ABC-type oligopep 92.4 0.1 2.2E-06 51.4 2.9 24 204-227 38-61 (268)
252 COG1100 GTPase SAR1 and relate 92.4 0.095 2.1E-06 51.3 2.8 23 206-228 6-28 (219)
253 PRK12339 2-phosphoglycerate ki 92.3 0.12 2.6E-06 49.5 3.3 24 204-227 2-25 (197)
254 cd01672 TMPK Thymidine monopho 92.3 0.26 5.7E-06 47.2 5.9 22 207-228 2-23 (200)
255 PRK14530 adenylate kinase; Pro 92.3 0.096 2.1E-06 51.2 2.8 21 207-227 5-25 (215)
256 PLN02796 D-glycerate 3-kinase 92.3 0.11 2.5E-06 53.5 3.4 24 204-227 99-122 (347)
257 cd04139 RalA_RalB RalA/RalB su 92.3 0.095 2.1E-06 48.4 2.6 22 207-228 2-23 (164)
258 PRK10463 hydrogenase nickel in 92.3 0.24 5.1E-06 50.0 5.5 25 203-227 102-126 (290)
259 PRK13232 nifH nitrogenase redu 92.3 0.093 2E-06 53.4 2.8 22 206-227 2-23 (273)
260 PRK08691 DNA polymerase III su 92.3 0.16 3.4E-06 57.3 4.6 45 178-227 16-60 (709)
261 PRK05642 DNA replication initi 92.2 0.33 7E-06 48.1 6.4 37 205-243 45-81 (234)
262 PF10662 PduV-EutP: Ethanolami 92.2 0.11 2.5E-06 46.2 2.8 23 206-228 2-24 (143)
263 PRK14490 putative bifunctional 92.2 0.15 3.2E-06 54.3 4.3 32 204-237 4-35 (369)
264 TIGR00064 ftsY signal recognit 92.2 0.19 4.1E-06 50.8 4.8 25 203-227 70-94 (272)
265 PRK13946 shikimate kinase; Pro 92.2 0.1 2.2E-06 49.6 2.6 23 205-227 10-32 (184)
266 PRK13230 nitrogenase reductase 92.2 0.1 2.3E-06 53.2 2.9 22 206-227 2-23 (279)
267 PRK14955 DNA polymerase III su 92.1 0.17 3.8E-06 54.4 4.7 45 178-227 16-60 (397)
268 PRK13948 shikimate kinase; Pro 92.1 0.12 2.6E-06 48.7 3.0 24 204-227 9-32 (182)
269 TIGR01425 SRP54_euk signal rec 92.1 0.31 6.6E-06 52.2 6.3 24 204-227 99-122 (429)
270 cd01983 Fer4_NifH The Fer4_Nif 92.0 0.11 2.3E-06 43.1 2.3 21 207-227 1-21 (99)
271 cd02117 NifH_like This family 92.0 0.11 2.3E-06 50.7 2.7 22 206-227 1-22 (212)
272 PRK04182 cytidylate kinase; Pr 92.0 0.11 2.4E-06 49.0 2.8 21 207-227 2-22 (180)
273 COG0467 RAD55 RecA-superfamily 92.0 0.3 6.4E-06 49.3 6.0 52 203-258 21-72 (260)
274 TIGR00764 lon_rel lon-related 92.0 0.3 6.4E-06 55.4 6.5 75 178-263 18-93 (608)
275 TIGR02173 cyt_kin_arch cytidyl 92.0 0.12 2.6E-06 48.3 2.9 21 207-227 2-22 (171)
276 cd02022 DPCK Dephospho-coenzym 91.9 0.1 2.2E-06 49.3 2.3 21 207-227 1-21 (179)
277 cd01393 recA_like RecA is a b 91.9 0.3 6.5E-06 48.1 5.8 50 203-254 17-72 (226)
278 TIGR02880 cbbX_cfxQ probable R 91.9 0.28 6.1E-06 50.0 5.7 49 179-227 23-80 (284)
279 PRK09435 membrane ATPase/prote 91.9 0.23 5E-06 51.5 5.0 36 188-227 43-78 (332)
280 TIGR02397 dnaX_nterm DNA polym 91.9 0.22 4.8E-06 52.9 5.1 45 178-227 14-58 (355)
281 TIGR02030 BchI-ChlI magnesium 91.9 0.21 4.6E-06 52.0 4.8 45 177-227 3-47 (337)
282 TIGR00750 lao LAO/AO transport 91.9 0.19 4.2E-06 51.7 4.5 26 203-228 32-57 (300)
283 PRK12323 DNA polymerase III su 91.8 0.19 4.2E-06 56.0 4.6 45 178-227 16-60 (700)
284 KOG0991 Replication factor C, 91.8 0.24 5.1E-06 47.2 4.4 45 177-227 26-70 (333)
285 PRK06761 hypothetical protein; 91.8 0.2 4.3E-06 50.5 4.3 23 206-228 4-26 (282)
286 COG1102 Cmk Cytidylate kinase 91.8 0.11 2.4E-06 46.7 2.1 44 207-263 2-45 (179)
287 cd03225 ABC_cobalt_CbiO_domain 91.8 0.13 2.8E-06 50.1 3.0 25 204-228 26-50 (211)
288 PRK15453 phosphoribulokinase; 91.8 0.15 3.2E-06 51.0 3.2 24 204-227 4-27 (290)
289 PRK13768 GTPase; Provisional 91.8 0.13 2.9E-06 51.4 3.1 23 205-227 2-24 (253)
290 PRK12377 putative replication 91.8 0.22 4.7E-06 49.5 4.5 38 205-244 101-138 (248)
291 cd02040 NifH NifH gene encodes 91.7 0.13 2.8E-06 52.3 3.0 22 206-227 2-23 (270)
292 PRK14949 DNA polymerase III su 91.7 0.2 4.4E-06 57.9 4.8 46 178-228 16-61 (944)
293 cd03114 ArgK-like The function 91.7 0.11 2.5E-06 47.1 2.4 21 207-227 1-21 (148)
294 PF04665 Pox_A32: Poxvirus A32 91.7 0.17 3.8E-06 49.5 3.7 34 206-241 14-47 (241)
295 PF02562 PhoH: PhoH-like prote 91.7 0.17 3.7E-06 48.4 3.5 54 180-241 2-55 (205)
296 PRK03731 aroL shikimate kinase 91.6 0.13 2.8E-06 48.2 2.7 22 206-227 3-24 (171)
297 PF13504 LRR_7: Leucine rich r 91.6 0.11 2.5E-06 27.6 1.3 17 505-522 1-17 (17)
298 cd03297 ABC_ModC_molybdenum_tr 91.6 0.14 3.1E-06 49.9 3.1 24 204-228 23-46 (214)
299 COG0563 Adk Adenylate kinase a 91.6 0.13 2.8E-06 48.3 2.6 22 207-228 2-23 (178)
300 PF05673 DUF815: Protein of un 91.6 0.19 4.1E-06 49.0 3.8 53 174-228 23-75 (249)
301 TIGR03499 FlhF flagellar biosy 91.6 0.15 3.2E-06 52.0 3.3 25 204-228 193-217 (282)
302 PF03266 NTPase_1: NTPase; In 91.6 0.13 2.7E-06 47.9 2.5 33 208-242 2-35 (168)
303 PRK14738 gmk guanylate kinase; 91.6 0.19 4.1E-06 48.7 3.8 25 204-228 12-36 (206)
304 PRK13765 ATP-dependent proteas 91.6 0.28 6.1E-06 55.5 5.6 76 178-263 31-106 (637)
305 PRK08099 bifunctional DNA-bind 91.6 0.13 2.7E-06 55.1 2.8 25 203-227 217-241 (399)
306 PLN03046 D-glycerate 3-kinase; 91.6 0.17 3.8E-06 53.2 3.7 24 204-227 211-234 (460)
307 PRK06620 hypothetical protein; 91.5 0.14 3E-06 49.9 2.8 23 206-228 45-67 (214)
308 cd03229 ABC_Class3 This class 91.5 0.15 3.2E-06 48.2 3.0 24 204-227 25-48 (178)
309 PRK14958 DNA polymerase III su 91.5 0.22 4.7E-06 55.2 4.7 45 178-227 16-60 (509)
310 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.5 0.14 3.1E-06 50.0 3.0 24 205-228 30-53 (218)
311 PRK10416 signal recognition pa 91.5 0.17 3.7E-06 52.3 3.6 24 204-227 113-136 (318)
312 COG1120 FepC ABC-type cobalami 91.5 0.15 3.2E-06 50.5 2.9 24 204-227 27-50 (258)
313 PRK04841 transcriptional regul 91.5 0.38 8.2E-06 58.3 7.2 61 189-260 21-82 (903)
314 PRK09087 hypothetical protein; 91.5 0.13 2.9E-06 50.4 2.7 24 205-228 44-67 (226)
315 TIGR01166 cbiO cobalt transpor 91.5 0.14 3E-06 48.9 2.8 24 205-228 18-41 (190)
316 cd01862 Rab7 Rab7 subfamily. 91.4 0.15 3.2E-06 47.6 2.9 21 208-228 3-23 (172)
317 cd03222 ABC_RNaseL_inhibitor T 91.4 0.15 3.2E-06 47.9 2.8 24 204-227 24-47 (177)
318 PRK13233 nifH nitrogenase redu 91.4 0.14 3.1E-06 52.1 2.9 22 206-227 3-24 (275)
319 PF02374 ArsA_ATPase: Anion-tr 91.4 0.3 6.4E-06 50.4 5.2 22 206-227 2-23 (305)
320 PF06564 YhjQ: YhjQ protein; 91.4 0.15 3.3E-06 50.0 2.9 22 206-227 2-24 (243)
321 PRK14951 DNA polymerase III su 91.3 0.24 5.3E-06 55.7 4.9 44 178-226 16-59 (618)
322 PRK07994 DNA polymerase III su 91.3 0.25 5.3E-06 55.9 4.8 45 178-227 16-60 (647)
323 TIGR00960 3a0501s02 Type II (G 91.3 0.15 3.3E-06 49.7 2.9 24 205-228 29-52 (216)
324 cd03238 ABC_UvrA The excision 91.3 0.16 3.5E-06 47.6 2.9 24 204-227 20-43 (176)
325 COG1116 TauB ABC-type nitrate/ 91.3 0.16 3.5E-06 49.4 2.9 24 204-227 28-51 (248)
326 PRK01184 hypothetical protein; 91.3 0.16 3.5E-06 48.2 3.0 18 206-223 2-19 (184)
327 PF00625 Guanylate_kin: Guanyl 91.2 0.19 4.2E-06 47.6 3.5 35 205-241 2-36 (183)
328 PRK00771 signal recognition pa 91.2 0.62 1.3E-05 50.3 7.6 24 204-227 94-117 (437)
329 PF13521 AAA_28: AAA domain; P 91.2 0.15 3.2E-06 47.3 2.6 20 208-227 2-21 (163)
330 cd02026 PRK Phosphoribulokinas 91.2 0.13 2.8E-06 52.1 2.3 21 207-227 1-21 (273)
331 PF00142 Fer4_NifH: 4Fe-4S iro 91.2 0.34 7.4E-06 47.6 5.1 41 206-248 1-41 (273)
332 TIGR01243 CDC48 AAA family ATP 91.1 0.16 3.4E-06 59.5 3.3 55 174-228 174-235 (733)
333 PLN02200 adenylate kinase fami 91.1 0.18 4E-06 49.7 3.3 24 204-227 42-65 (234)
334 TIGR00455 apsK adenylylsulfate 91.1 0.2 4.4E-06 47.5 3.5 24 204-227 17-40 (184)
335 PRK13541 cytochrome c biogenes 91.1 0.16 3.5E-06 48.7 2.9 24 205-228 26-49 (195)
336 PRK07429 phosphoribulokinase; 91.1 0.21 4.6E-06 51.8 3.9 25 203-227 6-30 (327)
337 PRK14970 DNA polymerase III su 91.1 0.29 6.3E-06 52.2 5.0 45 178-227 17-61 (367)
338 PRK13235 nifH nitrogenase redu 91.1 0.15 3.3E-06 51.9 2.7 22 206-227 2-23 (274)
339 PRK14964 DNA polymerase III su 91.1 0.26 5.7E-06 53.8 4.7 45 178-227 13-57 (491)
340 PRK08356 hypothetical protein; 91.0 0.21 4.5E-06 47.9 3.5 21 205-225 5-25 (195)
341 PHA02575 1 deoxynucleoside mon 91.0 0.17 3.7E-06 48.6 2.8 20 207-226 2-21 (227)
342 PRK14969 DNA polymerase III su 91.0 0.27 6E-06 54.7 4.9 45 178-227 16-60 (527)
343 COG1703 ArgK Putative periplas 91.0 0.27 5.8E-06 49.0 4.2 37 187-227 37-73 (323)
344 COG2909 MalT ATP-dependent tra 91.0 2.8 6.1E-05 47.9 12.5 69 186-262 23-92 (894)
345 TIGR00041 DTMP_kinase thymidyl 91.0 0.48 1E-05 45.3 6.0 23 206-228 4-26 (195)
346 cd03259 ABC_Carb_Solutes_like 91.0 0.17 3.7E-06 49.3 2.9 24 204-227 25-48 (213)
347 cd01131 PilT Pilus retraction 90.9 0.25 5.4E-06 47.5 3.9 33 207-241 3-35 (198)
348 cd03261 ABC_Org_Solvent_Resist 90.9 0.17 3.7E-06 50.1 2.9 24 205-228 26-49 (235)
349 PRK05703 flhF flagellar biosyn 90.9 0.28 6E-06 53.0 4.7 23 205-227 221-243 (424)
350 PRK08116 hypothetical protein; 90.9 0.21 4.5E-06 50.5 3.5 47 206-260 115-161 (268)
351 cd03269 ABC_putative_ATPase Th 90.9 0.17 3.7E-06 49.2 2.8 35 204-241 25-59 (210)
352 TIGR00231 small_GTP small GTP- 90.9 0.18 3.9E-06 45.8 2.9 23 207-229 3-25 (161)
353 PRK14527 adenylate kinase; Pro 90.9 0.19 4.2E-06 48.0 3.1 24 204-227 5-28 (191)
354 cd04155 Arl3 Arl3 subfamily. 90.9 0.17 3.8E-06 47.2 2.8 25 204-228 13-37 (173)
355 cd03235 ABC_Metallic_Cations A 90.9 0.17 3.6E-06 49.3 2.8 25 204-228 24-48 (213)
356 PRK13231 nitrogenase reductase 90.9 0.18 3.9E-06 51.0 3.1 23 205-227 2-24 (264)
357 cd03293 ABC_NrtD_SsuB_transpor 90.9 0.18 3.8E-06 49.5 2.9 24 205-228 30-53 (220)
358 TIGR02673 FtsE cell division A 90.8 0.18 3.9E-06 49.2 2.9 34 205-241 28-61 (214)
359 CHL00081 chlI Mg-protoporyphyr 90.8 0.25 5.4E-06 51.5 4.1 46 176-227 15-60 (350)
360 PRK14737 gmk guanylate kinase; 90.8 0.22 4.7E-06 47.2 3.4 25 204-228 3-27 (186)
361 PRK08154 anaerobic benzoate ca 90.8 0.28 6.1E-06 50.7 4.5 24 204-227 132-155 (309)
362 TIGR02016 BchX chlorophyllide 90.8 0.17 3.6E-06 52.0 2.7 22 206-227 1-22 (296)
363 PRK07003 DNA polymerase III su 90.8 0.28 6E-06 55.7 4.5 45 178-227 16-60 (830)
364 PRK12724 flagellar biosynthesi 90.8 0.44 9.5E-06 50.6 5.8 24 204-227 222-245 (432)
365 cd04163 Era Era subfamily. Er 90.7 0.22 4.7E-06 45.9 3.3 24 205-228 3-26 (168)
366 cd01130 VirB11-like_ATPase Typ 90.7 0.36 7.9E-06 45.8 4.8 23 205-227 25-47 (186)
367 PF03215 Rad17: Rad17 cell cyc 90.7 0.3 6.5E-06 54.0 4.7 62 176-242 17-78 (519)
368 TIGR02640 gas_vesic_GvpN gas v 90.7 0.53 1.2E-05 47.4 6.3 41 208-253 24-64 (262)
369 PRK07952 DNA replication prote 90.7 0.36 7.8E-06 47.8 4.9 36 205-242 99-134 (244)
370 cd03260 ABC_PstB_phosphate_tra 90.7 0.19 4.1E-06 49.5 3.0 23 205-227 26-48 (227)
371 cd04119 RJL RJL (RabJ-Like) su 90.7 0.19 4.1E-06 46.5 2.8 21 208-228 3-23 (168)
372 PRK10584 putative ABC transpor 90.7 0.19 4.1E-06 49.6 3.0 23 205-227 36-58 (228)
373 PRK06645 DNA polymerase III su 90.7 0.28 6.1E-06 54.0 4.5 45 178-227 21-65 (507)
374 TIGR03574 selen_PSTK L-seryl-t 90.6 0.16 3.4E-06 50.9 2.4 20 208-227 2-21 (249)
375 PLN02165 adenylate isopentenyl 90.6 0.21 4.5E-06 51.4 3.2 24 204-227 42-65 (334)
376 cd01858 NGP_1 NGP-1. Autoanti 90.6 0.39 8.4E-06 44.2 4.8 25 205-229 102-126 (157)
377 cd02034 CooC The accessory pro 90.6 0.19 4.2E-06 43.4 2.5 20 208-227 2-21 (116)
378 cd03263 ABC_subfamily_A The AB 90.6 0.2 4.3E-06 49.1 2.9 24 205-228 28-51 (220)
379 smart00173 RAS Ras subfamily o 90.6 0.19 4.2E-06 46.4 2.8 21 208-228 3-23 (164)
380 KOG0733 Nuclear AAA ATPase (VC 90.5 0.34 7.4E-06 52.7 4.8 55 174-228 186-246 (802)
381 KOG3308 Uncharacterized protei 90.5 0.2 4.4E-06 46.6 2.7 32 204-241 3-34 (225)
382 KOG3347 Predicted nucleotide k 90.5 0.18 3.9E-06 44.5 2.2 23 205-227 7-29 (176)
383 COG4107 PhnK ABC-type phosphon 90.5 0.22 4.7E-06 45.2 2.8 23 205-227 32-54 (258)
384 cd03256 ABC_PhnC_transporter A 90.5 0.2 4.3E-06 49.9 2.9 24 205-228 27-50 (241)
385 cd03264 ABC_drug_resistance_li 90.5 0.18 4E-06 49.0 2.6 32 207-241 27-58 (211)
386 TIGR03864 PQQ_ABC_ATP ABC tran 90.5 0.2 4.3E-06 49.8 2.9 25 204-228 26-50 (236)
387 smart00175 RAB Rab subfamily o 90.5 0.21 4.5E-06 46.1 2.9 21 208-228 3-23 (164)
388 TIGR00362 DnaA chromosomal rep 90.5 0.84 1.8E-05 49.4 7.9 24 205-228 136-159 (405)
389 COG1126 GlnQ ABC-type polar am 90.5 0.21 4.7E-06 47.3 2.8 35 204-241 27-61 (240)
390 PRK12608 transcription termina 90.5 0.47 1E-05 49.6 5.6 70 186-262 119-191 (380)
391 PRK14954 DNA polymerase III su 90.5 0.32 7E-06 54.9 4.8 45 178-227 16-60 (620)
392 cd02029 PRK_like Phosphoribulo 90.4 0.17 3.7E-06 50.1 2.3 21 207-227 1-21 (277)
393 TIGR01281 DPOR_bchL light-inde 90.4 0.19 4.2E-06 50.9 2.8 21 207-227 2-22 (268)
394 PRK15177 Vi polysaccharide exp 90.4 0.2 4.4E-06 48.8 2.8 25 204-228 12-36 (213)
395 PRK05416 glmZ(sRNA)-inactivati 90.4 0.23 5E-06 50.5 3.3 23 204-226 5-27 (288)
396 TIGR02315 ABC_phnC phosphonate 90.4 0.2 4.4E-06 49.9 2.9 24 205-228 28-51 (243)
397 PRK14974 cell division protein 90.4 0.25 5.5E-06 51.3 3.6 24 204-227 139-162 (336)
398 cd03226 ABC_cobalt_CbiO_domain 90.4 0.21 4.6E-06 48.3 2.9 24 205-228 26-49 (205)
399 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.4 0.21 4.6E-06 45.2 2.7 24 205-228 26-49 (144)
400 PRK13538 cytochrome c biogenes 90.3 0.21 4.6E-06 48.3 2.9 25 204-228 26-50 (204)
401 cd03115 SRP The signal recogni 90.3 0.23 4.9E-06 46.6 3.0 21 207-227 2-22 (173)
402 cd04113 Rab4 Rab4 subfamily. 90.3 0.21 4.6E-06 45.9 2.8 21 208-228 3-23 (161)
403 cd03237 ABC_RNaseL_inhibitor_d 90.3 0.21 4.5E-06 49.8 2.9 24 205-228 25-48 (246)
404 COG1123 ATPase components of v 90.3 0.2 4.3E-06 54.6 2.9 23 205-227 317-339 (539)
405 PRK09112 DNA polymerase III su 90.3 0.51 1.1E-05 49.6 5.9 46 177-227 22-67 (351)
406 cd03265 ABC_DrrA DrrA is the A 90.3 0.22 4.7E-06 48.8 3.0 34 205-241 26-59 (220)
407 PRK14952 DNA polymerase III su 90.3 0.35 7.5E-06 54.3 4.8 45 178-227 13-57 (584)
408 cd03296 ABC_CysA_sulfate_impor 90.3 0.21 4.6E-06 49.6 2.9 24 205-228 28-51 (239)
409 cd01876 YihA_EngB The YihA (En 90.3 0.2 4.4E-06 46.2 2.6 20 208-227 2-21 (170)
410 cd00154 Rab Rab family. Rab G 90.3 0.22 4.7E-06 45.4 2.8 21 208-228 3-23 (159)
411 cd01864 Rab19 Rab19 subfamily. 90.2 0.22 4.8E-06 46.1 2.8 23 206-228 4-26 (165)
412 TIGR02211 LolD_lipo_ex lipopro 90.2 0.22 4.7E-06 48.9 2.9 25 204-228 30-54 (221)
413 PRK05537 bifunctional sulfate 90.2 0.41 8.9E-06 53.8 5.3 45 179-227 370-414 (568)
414 cd00878 Arf_Arl Arf (ADP-ribos 90.2 0.22 4.8E-06 45.7 2.8 22 208-229 2-23 (158)
415 COG1419 FlhF Flagellar GTP-bin 90.2 0.2 4.2E-06 52.4 2.6 24 204-227 202-226 (407)
416 PRK09111 DNA polymerase III su 90.2 0.34 7.3E-06 54.6 4.6 46 177-227 23-68 (598)
417 TIGR01184 ntrCD nitrate transp 90.2 0.22 4.9E-06 49.1 3.0 24 205-228 11-34 (230)
418 cd03292 ABC_FtsE_transporter F 90.1 0.23 4.9E-06 48.4 3.0 24 205-228 27-50 (214)
419 TIGR02902 spore_lonB ATP-depen 90.1 0.3 6.6E-06 54.6 4.2 44 178-227 65-108 (531)
420 PRK11629 lolD lipoprotein tran 90.1 0.23 5E-06 49.2 3.0 24 205-228 35-58 (233)
421 cd00879 Sar1 Sar1 subfamily. 90.1 0.23 5E-06 47.3 2.9 23 206-228 20-42 (190)
422 cd00876 Ras Ras family. The R 90.1 0.23 5E-06 45.5 2.8 21 208-228 2-22 (160)
423 cd04159 Arl10_like Arl10-like 90.1 0.23 5E-06 45.3 2.8 21 208-228 2-22 (159)
424 PRK11248 tauB taurine transpor 90.1 0.23 5E-06 49.9 3.0 24 205-228 27-50 (255)
425 cd03224 ABC_TM1139_LivF_branch 90.1 0.24 5.2E-06 48.6 3.0 24 204-227 25-48 (222)
426 TIGR02528 EutP ethanolamine ut 90.0 0.23 5.1E-06 44.6 2.8 21 208-228 3-23 (142)
427 COG0542 clpA ATP-binding subun 90.0 4 8.6E-05 46.9 12.8 49 179-227 492-543 (786)
428 cd03266 ABC_NatA_sodium_export 90.0 0.31 6.7E-06 47.7 3.8 34 205-241 31-64 (218)
429 TIGR01241 FtsH_fam ATP-depende 90.0 0.29 6.4E-06 54.4 4.0 56 173-228 50-111 (495)
430 cd03278 ABC_SMC_barmotin Barmo 90.0 0.23 4.9E-06 47.7 2.7 21 207-227 24-44 (197)
431 TIGR03608 L_ocin_972_ABC putat 90.0 0.24 5.1E-06 48.0 2.9 23 205-227 24-46 (206)
432 TIGR00450 mnmE_trmE_thdF tRNA 90.0 1.5 3.4E-05 47.7 9.4 22 207-228 205-226 (442)
433 cd03301 ABC_MalK_N The N-termi 90.0 0.24 5.2E-06 48.2 3.0 24 205-228 26-49 (213)
434 cd03257 ABC_NikE_OppD_transpor 90.0 0.23 5.1E-06 48.9 2.9 24 205-228 31-54 (228)
435 PRK10247 putative ABC transpor 89.9 0.24 5.2E-06 48.7 3.0 24 205-228 33-56 (225)
436 PRK12727 flagellar biosynthesi 89.9 0.46 9.9E-06 51.9 5.2 24 204-227 349-372 (559)
437 PRK04301 radA DNA repair and r 89.9 0.71 1.5E-05 48.0 6.6 56 204-260 101-160 (317)
438 cd03258 ABC_MetN_methionine_tr 89.9 0.24 5.1E-06 49.1 2.9 25 204-228 30-54 (233)
439 PF08303 tRNA_lig_kinase: tRNA 89.9 0.44 9.5E-06 43.3 4.2 43 210-261 4-51 (168)
440 TIGR02770 nickel_nikD nickel i 89.9 0.24 5.2E-06 48.9 2.9 25 204-228 11-35 (230)
441 COG0703 AroK Shikimate kinase 89.8 0.24 5.1E-06 45.6 2.5 20 208-227 5-24 (172)
442 PRK00698 tmk thymidylate kinas 89.8 0.25 5.4E-06 47.8 2.9 23 206-228 4-26 (205)
443 cd04138 H_N_K_Ras_like H-Ras/N 89.8 0.24 5.2E-06 45.5 2.7 21 208-228 4-24 (162)
444 cd03233 ABC_PDR_domain1 The pl 89.8 0.24 5.3E-06 47.8 2.8 25 204-228 32-56 (202)
445 PRK13539 cytochrome c biogenes 89.8 0.24 5.2E-06 48.0 2.8 25 204-228 27-51 (207)
446 COG1136 SalX ABC-type antimicr 89.8 0.26 5.7E-06 47.7 3.0 23 205-227 31-53 (226)
447 TIGR03815 CpaE_hom_Actino heli 89.8 0.45 9.8E-06 49.7 5.0 48 180-227 68-116 (322)
448 PRK14088 dnaA chromosomal repl 89.8 1 2.3E-05 49.0 7.9 49 205-261 130-180 (440)
449 PRK13407 bchI magnesium chelat 89.7 0.34 7.4E-06 50.3 4.0 46 176-227 6-51 (334)
450 PRK10867 signal recognition pa 89.7 0.92 2E-05 48.9 7.3 25 203-227 98-122 (433)
451 cd01898 Obg Obg subfamily. Th 89.7 0.25 5.4E-06 46.0 2.7 20 208-227 3-22 (170)
452 cd03219 ABC_Mj1267_LivG_branch 89.7 0.24 5.3E-06 49.1 2.8 23 205-227 26-48 (236)
453 cd04124 RabL2 RabL2 subfamily. 89.7 0.26 5.6E-06 45.5 2.8 21 208-228 3-23 (161)
454 cd01428 ADK Adenylate kinase ( 89.7 0.24 5.1E-06 47.4 2.6 20 208-227 2-21 (194)
455 PTZ00088 adenylate kinase 1; P 89.7 0.24 5.1E-06 48.6 2.6 20 208-227 9-28 (229)
456 cd02032 Bchl_like This family 89.7 0.25 5.3E-06 50.1 2.9 21 207-227 2-22 (267)
457 COG3638 ABC-type phosphate/pho 89.6 0.27 5.9E-06 47.2 2.8 24 204-227 29-52 (258)
458 PRK12422 chromosomal replicati 89.6 1.2 2.6E-05 48.5 8.3 24 205-228 141-164 (445)
459 TIGR00101 ureG urease accessor 89.6 0.29 6.2E-06 47.0 3.1 22 206-227 2-23 (199)
460 PRK14494 putative molybdopteri 89.6 0.29 6.2E-06 47.8 3.1 22 206-227 2-23 (229)
461 PRK06526 transposase; Provisio 89.6 0.19 4.2E-06 50.2 2.0 24 205-228 98-121 (254)
462 cd03247 ABCC_cytochrome_bd The 89.6 0.26 5.6E-06 46.5 2.8 24 205-228 28-51 (178)
463 PLN00020 ribulose bisphosphate 89.6 0.28 6E-06 50.8 3.1 26 203-228 146-171 (413)
464 cd03232 ABC_PDR_domain2 The pl 89.6 0.27 5.8E-06 47.0 2.9 23 205-227 33-55 (192)
465 TIGR00972 3a0107s01c2 phosphat 89.6 0.25 5.5E-06 49.4 2.9 24 204-227 26-49 (247)
466 COG0541 Ffh Signal recognition 89.6 21 0.00046 37.9 16.7 57 204-263 99-157 (451)
467 COG1121 ZnuC ABC-type Mn/Zn tr 89.6 0.26 5.6E-06 48.5 2.8 22 206-227 31-52 (254)
468 PRK11124 artP arginine transpo 89.6 0.26 5.7E-06 49.1 2.9 24 205-228 28-51 (242)
469 cd00983 recA RecA is a bacter 89.6 0.49 1.1E-05 48.8 4.9 45 203-249 53-97 (325)
470 PRK13540 cytochrome c biogenes 89.5 0.28 6E-06 47.3 3.0 35 204-241 26-60 (200)
471 cd01673 dNK Deoxyribonucleosid 89.5 0.22 4.8E-06 47.7 2.2 22 207-228 1-22 (193)
472 cd04171 SelB SelB subfamily. 89.5 0.28 6.2E-06 45.1 3.0 21 207-227 2-22 (164)
473 cd03223 ABCD_peroxisomal_ALDP 89.5 0.29 6.2E-06 45.5 2.9 25 204-228 26-50 (166)
474 PRK14722 flhF flagellar biosyn 89.5 0.35 7.5E-06 50.9 3.8 25 204-228 136-160 (374)
475 PF00071 Ras: Ras family; Int 89.5 0.28 6.1E-06 45.1 2.9 21 208-228 2-22 (162)
476 cd04177 RSR1 RSR1 subgroup. R 89.5 0.27 5.8E-06 45.8 2.7 21 208-228 4-24 (168)
477 PRK14245 phosphate ABC transpo 89.4 0.27 5.9E-06 49.3 3.0 24 204-227 28-51 (250)
478 TIGR02324 CP_lyasePhnL phospho 89.4 0.28 6E-06 48.3 2.9 34 205-241 34-67 (224)
479 TIGR01189 ccmA heme ABC export 89.4 0.28 6.1E-06 47.1 3.0 25 204-228 25-49 (198)
480 PRK10908 cell division protein 89.4 0.28 6E-06 48.2 3.0 25 204-228 27-51 (222)
481 cd03268 ABC_BcrA_bacitracin_re 89.4 0.28 6.1E-06 47.6 2.9 35 204-241 25-59 (208)
482 TIGR00017 cmk cytidylate kinas 89.4 0.29 6.3E-06 47.7 3.0 22 206-227 3-24 (217)
483 TIGR01978 sufC FeS assembly AT 89.4 0.27 5.8E-06 49.0 2.9 24 205-228 26-49 (243)
484 PRK12338 hypothetical protein; 89.4 0.32 7E-06 49.8 3.4 24 204-227 3-26 (319)
485 PRK11022 dppD dipeptide transp 89.4 0.26 5.7E-06 51.4 2.9 25 204-228 32-56 (326)
486 cd02042 ParA ParA and ParB of 89.3 0.27 5.8E-06 41.5 2.4 21 207-227 1-22 (104)
487 cd01860 Rab5_related Rab5-rela 89.3 0.28 6.2E-06 45.2 2.8 22 208-229 4-25 (163)
488 PRK09493 glnQ glutamine ABC tr 89.3 0.27 5.9E-06 48.9 2.8 34 205-241 27-60 (240)
489 PRK10619 histidine/lysine/argi 89.3 0.27 5.9E-06 49.5 2.9 25 204-228 30-54 (257)
490 PRK13185 chlL protochlorophyll 89.3 0.29 6.2E-06 49.7 3.0 22 206-227 3-24 (270)
491 cd03246 ABCC_Protease_Secretio 89.3 0.3 6.6E-06 45.7 3.0 23 205-227 28-50 (173)
492 cd03295 ABC_OpuCA_Osmoprotecti 89.3 0.29 6.2E-06 48.8 3.0 24 205-228 27-50 (242)
493 PRK11247 ssuB aliphatic sulfon 89.3 0.29 6.2E-06 49.2 3.0 23 205-227 38-60 (257)
494 cd03216 ABC_Carb_Monos_I This 89.3 0.31 6.7E-06 45.2 3.0 24 205-228 26-49 (163)
495 KOG0473 Leucine-rich repeat pr 89.2 0.018 3.9E-07 54.6 -5.2 83 422-516 40-122 (326)
496 cd04123 Rab21 Rab21 subfamily. 89.2 0.29 6.3E-06 44.9 2.8 21 208-228 3-23 (162)
497 cd03218 ABC_YhbG The ABC trans 89.2 0.29 6.2E-06 48.4 2.9 23 205-227 26-48 (232)
498 PRK09544 znuC high-affinity zi 89.2 0.29 6.3E-06 49.0 3.0 25 204-228 29-53 (251)
499 TIGR02012 tigrfam_recA protein 89.2 0.54 1.2E-05 48.4 4.9 45 203-249 53-97 (321)
500 PRK14247 phosphate ABC transpo 89.2 0.29 6.2E-06 49.1 2.9 24 205-228 29-52 (250)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-69 Score=612.05 Aligned_cols=573 Identities=25% Similarity=0.355 Sum_probs=438.3
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHhhhhhhhhh
Q 036753 2 VDAFISPLLQQLTSMAVEEAKEQVRLVTGVGKEVEKLTSNLRAIQAVLHDAEKRQVKDETVKLWLDQLRDACYDMEDVLG 81 (725)
Q Consensus 2 a~~~v~~~~~kl~~~l~~~~~~e~~~~~~v~~~~~~L~~~L~~i~~~L~~ae~~~~~~~~~~~wl~~lr~~aydaeD~lD 81 (725)
|++.++..++|+.+ .+.+++..+.+.++.+..|+++|..++.+++|+++++.....++.|.+.+++++|++||+++
T Consensus 1 ~~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CCeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888 89999999999999999999999999999999999988889999999999999999999999
Q ss_pred hhhhHHHHhhhcCCCCCCCchhhhhhccccccCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 036753 82 EWSTARLKLQIDGVDDDPENDVLVCLEKVCSFFPPASCFGCKQLVLRRDIALKIKEINETLDNIDKQKAMFRFAANVIKS 161 (725)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~ 161 (725)
.|..+....+..+.-.. .....+.. |+ ..++++.+..+..+.+++..+.+....++........
T Consensus 77 ~~~v~~~~~~~~~~l~~--------~~~~~~~~----c~----~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~ 140 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLST--------RSVERQRL----CL----CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVV 140 (889)
T ss_pred HHHHHHHHHHHhHHhhh--------hHHHHHHH----hh----hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecc
Confidence 99998876654322000 00011111 11 1455667777777777777777766666544322111
Q ss_pred c--cccCCCCCccccccCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchh-hhccccce
Q 036753 162 T--ERADQRGPSISSIDVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDD-VKKHFDER 238 (725)
Q Consensus 162 ~--~~~~~~~~~~~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~-~~~~F~~~ 238 (725)
. ..+...+++.+...+.. ||.+..++++++.|..+ +..+|||+||||+||||||+.|||+.. ++.+||..
T Consensus 141 ~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~ 213 (889)
T KOG4658|consen 141 GESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGV 213 (889)
T ss_pred cccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceE
Confidence 1 11112344445444555 99999999999999865 339999999999999999999999987 99999999
Q ss_pred eeeecCCCccHHHHHHHHHHHhcCCCCCC----------------------------h----------------------
Q 036753 239 IWVCVSEPFDEFRIARAVIEALKSGDASN----------------------------F---------------------- 268 (725)
Q Consensus 239 ~wv~vs~~~~~~~l~~~i~~~l~~~~~~~----------------------------W---------------------- 268 (725)
|||+||+.|+...++++|+..+...+... |
T Consensus 214 iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~Kvv 293 (889)
T KOG4658|consen 214 IWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVV 293 (889)
T ss_pred EEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEE
Confidence 99999999999999999999887731110 2
Q ss_pred --------------------------------------------------------------------------------
Q 036753 269 -------------------------------------------------------------------------------- 268 (725)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (725)
T Consensus 294 lTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~ 373 (889)
T KOG4658|consen 294 LTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQ 373 (889)
T ss_pred EEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHH
Confidence
Q ss_pred -----------------hhhhhhhhhhhhhcccCCchhhhhhhhhcccCCCCCccCHHHHHHHHHHcCCcccC-CCccHH
Q 036753 269 -----------------EAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEK-GAKEME 330 (725)
Q Consensus 269 -----------------~~~~~~i~~~L~lSy~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~Wia~g~i~~~-~~~~~e 330 (725)
....+.|+++|++|||+||.++|.||+|||+|||||+|+++.|+.+|+||||+.+. ++++++
T Consensus 374 eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~ 453 (889)
T KOG4658|consen 374 EWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAE 453 (889)
T ss_pred HHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchh
Confidence 12356789999999999999999999999999999999999999999999999884 468899
Q ss_pred HHHHHHHHHHHhCCCcccccCCCCCceeEeecchhHHHHHHHhhc-----ccceEEecc-CCccccccccccceeEEEee
Q 036753 331 DIGEEYFNILASRSFFQDFDKGDDGEIYKCKMHDIVHDFAQYLCR-----NECLAVEIH-SGEELAISSFEEKKILHLPL 404 (725)
Q Consensus 331 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~dla~~i~~-----~e~~~~~~~-~~~~~~~~~~~~~~~r~L~l 404 (725)
+.|+.|+.+|+.+||++..... ++..+|+|||++||+|.++++ +|+.++... +..+.+....+ ..+|++++
T Consensus 454 d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~s~ 530 (889)
T KOG4658|consen 454 DVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRMSL 530 (889)
T ss_pred cchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEEEE
Confidence 9999999999999999987754 667789999999999999999 666555543 33334433333 58999999
Q ss_pred eecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCcccc
Q 036753 405 TLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLK 484 (725)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr 484 (725)
..+.....+... .+++|++|.+.++.. +.....+.+|..++.||||||+ +|..+..+|.+|+.|.|||
T Consensus 531 ~~~~~~~~~~~~-----~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs------~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 531 MNNKIEHIAGSS-----ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLS------GNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred eccchhhccCCC-----CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECC------CCCccCcCChHHhhhhhhh
Confidence 998876544443 677899999999862 1222245668999999999999 7777899999999999999
Q ss_pred EEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEc
Q 036753 485 YLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVG 564 (725)
Q Consensus 485 ~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~ 564 (725)
||+++++. +..+|.++++|++|.+|++..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.+.
T Consensus 599 yL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheee
Confidence 99999999 99999999999999999999998777777777779999999987653 11111234555666666665554
Q ss_pred CcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCC
Q 036753 565 GGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIR 621 (725)
Q Consensus 565 ~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~ 621 (725)
... ...+..+..+.+|+.+.+.-... ........+++..+.+|+.|.+..+.++
T Consensus 677 ~~s--~~~~e~l~~~~~L~~~~~~l~~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 677 ISS--VLLLEDLLGMTRLRSLLQSLSIE-GCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cch--hHhHhhhhhhHHHHHHhHhhhhc-ccccceeecccccccCcceEEEEcCCCc
Confidence 433 22234445555555322211100 0222444567788899999999988753
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.4e-43 Score=420.61 Aligned_cols=487 Identities=20% Similarity=0.265 Sum_probs=285.4
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeee---cCCC------
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVC---VSEP------ 246 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~------ 246 (725)
+.+++||++.+++++..+|..+. ++++|||||||||+||||||+++|+ ++..+|+..+|+. |+..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 34569999999999999986543 3799999999999999999999999 6888999988863 2211
Q ss_pred -----cc-HHHHHHHHHHHhcCCC---C----------------------CC----------------------------
Q 036753 247 -----FD-EFRIARAVIEALKSGD---A----------------------SN---------------------------- 267 (725)
Q Consensus 247 -----~~-~~~l~~~i~~~l~~~~---~----------------------~~---------------------------- 267 (725)
++ ...++++++.++.... . .+
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 11 1233444443332110 0 00
Q ss_pred -----------------------------------------------------------------------h--------
Q 036753 268 -----------------------------------------------------------------------F-------- 268 (725)
Q Consensus 268 -----------------------------------------------------------------------W-------- 268 (725)
|
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1
Q ss_pred hhhhhhhhhhhhhcccCCch-hhhhhhhhcccCCCCCccCHHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHHhCCCcc
Q 036753 269 EAIEKGLLAPLLLSYNELPS-KVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQ 347 (725)
Q Consensus 269 ~~~~~~i~~~L~lSy~~L~~-~lk~cfl~~~~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~ 347 (725)
...+.+|.++|++||++|++ ..|.||+|||+||.+..+ ..+..|.+.+.+... ..++.|+++||++
T Consensus 416 ~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~----------~~l~~L~~ksLi~ 482 (1153)
T PLN03210 416 NGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN----------IGLKNLVDKSLIH 482 (1153)
T ss_pred hCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch----------hChHHHHhcCCEE
Confidence 12334688999999999987 599999999999998754 346778887765432 2388999999998
Q ss_pred cccCCCCCceeEeecchhHHHHHHHhhcccc-------eEEeccCCccccccccccceeEEEeeeecCCCCcccccccCC
Q 036753 348 DFDKGDDGEIYKCKMHDIVHDFAQYLCRNEC-------LAVEIHSGEELAISSFEEKKILHLPLTLRRGASVPISIWGNV 420 (725)
Q Consensus 348 ~~~~~~~~~~~~~~mhdl~~dla~~i~~~e~-------~~~~~~~~~~~~~~~~~~~~~r~L~l~~~~~~~~~~~~~~~~ 420 (725)
.... .++|||++|+||+.+++++. +.+......++.........++.+++.......... ....+
T Consensus 483 ~~~~-------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i-~~~aF 554 (1153)
T PLN03210 483 VRED-------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI-HENAF 554 (1153)
T ss_pred EcCC-------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee-cHHHH
Confidence 7532 48999999999999987763 333322211111122222567777776554432111 11123
Q ss_pred CCcccccEEEeccCCcc---ccccchhHHhhcCC-cceEEEeccccCCCccccccccccccccCccccEEEeecCCCccc
Q 036753 421 TGLRGLRSLLVKSDEYS---WSSEGLPQLFEKLT-CLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIEN 496 (725)
Q Consensus 421 ~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~ 496 (725)
.++++|+.|.+..+... .....+|..|..++ .||.|++. ++. +..+|..+ .+.+|++|++++|. +..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~------~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~ 625 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD------KYP-LRCMPSNF-RPENLVKLQMQGSK-LEK 625 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec------CCC-CCCCCCcC-CccCCcEEECcCcc-ccc
Confidence 47788888877654211 01111333343332 35555555 444 44455444 24455555555554 445
Q ss_pred cchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCcccc
Q 036753 497 LPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSL 576 (725)
Q Consensus 497 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L 576 (725)
+|..+..+++|+.|++++|..+..+| .++.+++|+.|++.+|..+..+|..++++++|+.|++.+|......+..+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--- 701 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--- 701 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---
Confidence 55555555555555555544444444 24445555555555554445555555555555555544433222111111
Q ss_pred ccCCCCCceEEeCcCCCCChhh----------------hhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHH
Q 036753 577 KKLNFLQQCGIRGLGGVSDAGE----------------AARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDER 640 (725)
Q Consensus 577 ~~L~~L~~L~i~~~~~~~~~~~----------------~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 640 (725)
++++|+.|.+.++..+..... .++.. ..+++|+.|.+..+...... ......
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~l~----------~~~~~l 769 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEKLW----------ERVQPL 769 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc-ccccccccccccccchhhcc----------cccccc
Confidence 334444444444332211100 01111 12344444444432200000 000000
Q ss_pred HhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeecccccCceEeCc
Q 036753 641 LLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKRVGN 716 (725)
Q Consensus 641 ~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~i~~ 716 (725)
.......+++|+.|+|++|..... + |.+++++++|+.|+|++|..++.+|....+++|+.|++++|..+..+|.
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~-l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVE-L-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred chhhhhccccchheeCCCCCCccc-c-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 001122357899999999876553 5 8889999999999999999999999866899999999999988877764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=1.7e-21 Score=235.10 Aligned_cols=259 Identities=22% Similarity=0.245 Sum_probs=127.6
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+++|+.|++++|.+... +| ...+++|++|+|+ +|.+...+|..++++.+|++|++++|.....+|..+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~---~p--~~~l~~L~~L~Ls------~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGS---IP--RGSIPNLETLDLS------NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCCCCCEEECcCCccccc---cC--ccccCCCCEEECc------CCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 444555555554443211 22 1234455555555 444233455555555566666665555334555555
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
+++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++.++..... ....+.++++
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~ 261 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP---IPSSLGNLKN 261 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc---cChhHhCCCC
Confidence 5566666666655554445555555556666666655544445555555555666555554443321 1123344444
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRG 661 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 661 (725)
|+.|.+..... ....+..+.++++|+.|+|++|.+. ..++..+..+++|+.|++++|.+
T Consensus 262 L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~-----------------~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 262 LQYLFLYQNKL----SGPIPPSIFSLQKLISLDLSDNSLS-----------------GEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred CCEEECcCCee----eccCchhHhhccCcCEEECcCCeec-----------------cCCChhHcCCCCCcEEECCCCcc
Confidence 55554443211 1112233444555566666555421 12233444555566666655555
Q ss_pred CCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeecccccCceEeCcc
Q 036753 662 RRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQSVKRVGNE 717 (725)
Q Consensus 662 ~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~~~ 717 (725)
... + |.++..+++|+.|+|++|...+.+|. ++.+++|+.|++++|.--..+|..
T Consensus 321 ~~~-~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 321 TGK-I-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred CCc-C-ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 431 2 55555556666666665544444444 555555666666555433334433
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.85 E-value=1.4e-21 Score=201.66 Aligned_cols=139 Identities=35% Similarity=0.673 Sum_probs=116.9
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHHHHHHhcC
Q 036753 183 RPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARAVIEALKS 262 (725)
Q Consensus 183 ~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 262 (725)
||.++++|.+.|.... ++.++|+|+||||+||||||+.+|++..++.+|+.++||.++...+...+++.|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 6889999999998753 489999999999999999999999987799999999999999999999999999999987
Q ss_pred CCC-----CC-----------------------------h----------------------------------------
Q 036753 263 GDA-----SN-----------------------------F---------------------------------------- 268 (725)
Q Consensus 263 ~~~-----~~-----------------------------W---------------------------------------- 268 (725)
... .+ |
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 621 11 1
Q ss_pred -------------------------------------------------------------------------hhhhhhh
Q 036753 269 -------------------------------------------------------------------------EAIEKGL 275 (725)
Q Consensus 269 -------------------------------------------------------------------------~~~~~~i 275 (725)
......+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0113568
Q ss_pred hhhhhhcccCCchhhhhhhhhcccCCCCCccCHHHHHHHHHHcCCcccCC
Q 036753 276 LAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKG 325 (725)
Q Consensus 276 ~~~L~lSy~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~Wia~g~i~~~~ 325 (725)
..++.+||+.||+++|+||+|||+||+++.|+++.|+++|+++|||+..+
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 88999999999999999999999999999999999999999999998753
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=8e-21 Score=229.19 Aligned_cols=277 Identities=19% Similarity=0.154 Sum_probs=123.4
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
++++|+.|++.+|.+.. .+|..+.++++|++|+|+ +|.+...+|..++++.+|++|++++|.....+|..+
T Consensus 162 ~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVG---KIPNSLTNLTSLEFLTLA------SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred cCCCCCEEECccCcccc---cCChhhhhCcCCCeeecc------CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 44444444444443221 133344444444444444 444233344444444444444444444222444444
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
+++++|++|++++|.....+|..++++++|+.|++++|.....+|..++++++|++|++.++..... ....+.++++
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~ 309 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE---IPELVIQLQN 309 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC---CChhHcCCCC
Confidence 4444444444444443334444444444444444444433333444444444444444433332211 1111223333
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCccccc-------CCCCCchhHHHHhhhcCCCCCCCcE
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAG-------RRENEEDEDERLLEALGPPPNLKNL 654 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~L~~L 654 (725)
|+.|++...... ...+..+..+++|+.|+|++|.+.+..+..+. ...........++..+..+++|+.|
T Consensus 310 L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 310 LEILHLFSNNFT----GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CcEEECCCCccC----CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 333333322110 11112233344444444444443211110000 0000000111223445556677777
Q ss_pred EEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeecccccCceEeCc
Q 036753 655 GIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQSVKRVGN 716 (725)
Q Consensus 655 ~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~~ 716 (725)
++++|..... + |.++..+++|+.|+|.+|...+.+|. +..+++|+.|++++|.-...+|.
T Consensus 386 ~l~~n~l~~~-~-p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 386 ILFSNSLEGE-I-PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred ECcCCEeccc-C-CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence 7777765542 3 66677777777787777765555665 77778888888877763334443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.6e-22 Score=208.92 Aligned_cols=296 Identities=21% Similarity=0.227 Sum_probs=193.0
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.++.||++..+... .+.+.++.++.||++++..|.+... + +|..+..+..|.+|||+ +|. +.+.|..
T Consensus 55 qkLEHLs~~HN~L~----~vhGELs~Lp~LRsv~~R~N~LKns-G-iP~diF~l~dLt~lDLS------hNq-L~EvP~~ 121 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLI----SVHGELSDLPRLRSVIVRDNNLKNS-G-IPTDIFRLKDLTILDLS------HNQ-LREVPTN 121 (1255)
T ss_pred hhhhhhhhhhhhhH----hhhhhhccchhhHHHhhhccccccC-C-CCchhcccccceeeecc------hhh-hhhcchh
Confidence 67888888877765 3445556999999999999887433 3 67778899999999999 998 9999999
Q ss_pred cccCccccEEEeecCCCccccchhh-hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccC
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETL-CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 555 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L 555 (725)
+.+-+++-.|+|++|. |..+|.++ -+|..|-.|||++|+ +..+|+.+..|..|+.|.+++|.....--..+..+++|
T Consensus 122 LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL 199 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSL 199 (1255)
T ss_pred hhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhh
Confidence 9999999999999998 99999764 589999999999998 99999999999999999999985422212334457888
Q ss_pred cccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCc---ccc--cC
Q 036753 556 RRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDE---EQA--GR 630 (725)
Q Consensus 556 ~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~---~~~--~~ 630 (725)
++|.+.+.+..- ...-..+..|.+|+.++++... + ...+..+-++.+|+.|+|++|.|+.... ... ..
T Consensus 200 ~vLhms~TqRTl--~N~Ptsld~l~NL~dvDlS~N~-L----p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 200 SVLHMSNTQRTL--DNIPTSLDDLHNLRDVDLSENN-L----PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLET 272 (1255)
T ss_pred hhhhcccccchh--hcCCCchhhhhhhhhccccccC-C----CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhh
Confidence 888888776553 2222344555666665554311 1 2233456778899999999887532211 000 00
Q ss_pred CCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeeccccc
Q 036753 631 RENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 631 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~ 709 (725)
.+...+....++..++.+++|++|.+.+|...-+.+ |+.++.|.+|+.+...+| .++-+|. +..++.|+.|.|.++.
T Consensus 273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi-PSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI-PSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hccccchhccchHHHhhhHHHHHHHhccCcccccCC-ccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc
Confidence 000111122234444445555555555444333224 555555555555555544 4444444 5555555666655444
Q ss_pred CceEeCcc
Q 036753 710 SVKRVGNE 717 (725)
Q Consensus 710 ~l~~i~~~ 717 (725)
|-.+|..
T Consensus 351 -LiTLPea 357 (1255)
T KOG0444|consen 351 -LITLPEA 357 (1255)
T ss_pred -eeechhh
Confidence 4444443
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=1.9e-19 Score=217.53 Aligned_cols=285 Identities=19% Similarity=0.212 Sum_probs=180.6
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.++|.|.+..+....+|..+ ...+|+.|.+.++.+.. ++..+..+++|+.|+|+ ++..+..+|.
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-----~~~~L~~L~L~~s~l~~----L~~~~~~l~~Lk~L~Ls------~~~~l~~ip~- 652 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-----RPENLVKLQMQGSKLEK----LWDGVHSLTGLRNIDLR------GSKNLKEIPD- 652 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-----CccCCcEEECcCccccc----cccccccCCCCCEEECC------CCCCcCcCCc-
Confidence 45777777766665555544 46778888887776432 44456777888888887 6655666764
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
++.+++|++|+|++|..+..+|.+++++++|+.|++++|..++.+|..+ ++++|++|++++|..+..+|... ++|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~---~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS---TNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc---CCcC
Confidence 7778888888888877777888888888888888888887788888766 67788888888876665555322 2344
Q ss_pred ccCeEEEcCcCCCccCcccccc----------------------------CCCCCceEEeCcCCCCChhhhhhhcccccc
Q 036753 557 RVREFVVGGGYDRACSLGSLKK----------------------------LNFLQQCGIRGLGGVSDAGEAARAELEKKK 608 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~----------------------------L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 608 (725)
+|++..+.... .+..+ .+.+ .++|+.|.+.++... ..++..+.+++
T Consensus 729 ~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l----~~lP~si~~L~ 802 (1153)
T PLN03210 729 WLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL----VELPSSIQNLH 802 (1153)
T ss_pred eeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc----cccChhhhCCC
Confidence 44433332211 01000 0011 123444444433221 11234456667
Q ss_pred ccCcEEEEecC-CCCCCc----ccc---cCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCcccccee
Q 036753 609 YLLKLGLHFDR-IRDGDE----EQA---GRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDL 680 (725)
Q Consensus 609 ~L~~L~L~~~~-l~~~~~----~~~---~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L 680 (725)
+|+.|+|++|. +..... ..+ ...... ....++ ..+++|+.|+|+++.+.. + |.|+..+++|+.|
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~--~L~~~p---~~~~nL~~L~Ls~n~i~~--i-P~si~~l~~L~~L 874 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGINLESLESLDLSGCS--RLRTFP---DISTNISDLNLSRTGIEE--V-PWWIEKFSNLSFL 874 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCCCccccCEEECCCCC--cccccc---ccccccCEeECCCCCCcc--C-hHHHhcCCCCCEE
Confidence 77777776653 111000 000 000000 001111 123678899998888877 8 8899999999999
Q ss_pred EEcCCCCCCcCCC-CCCccccceeecccccCceEeC
Q 036753 681 SLFWWSNCEHLPP-LGKLKSLESLLIYGMQSVKRVG 715 (725)
Q Consensus 681 ~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~ 715 (725)
+|.+|..+..+|. +..+++|+.|++.+|++|..++
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 9999999999987 8889999999999999988664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.5e-21 Score=201.89 Aligned_cols=297 Identities=21% Similarity=0.218 Sum_probs=219.6
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccc--cc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKE--IP 474 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~--lp 474 (725)
..+++|.+.......+|.++. .+.+|..|.+.+|.+... ...++.++.||.+.+. .|+ ++. +|
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~----~lqkLEHLs~~HN~L~~v----hGELs~Lp~LRsv~~R------~N~-LKnsGiP 96 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELS----RLQKLEHLSMAHNQLISV----HGELSDLPRLRSVIVR------DNN-LKNSGIP 96 (1255)
T ss_pred hheeEEEechhhhhhChHHHH----HHhhhhhhhhhhhhhHhh----hhhhccchhhHHHhhh------ccc-cccCCCC
Confidence 467778777777766677665 889999999999886543 3347888999999998 777 543 89
Q ss_pred cccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcccCCCc
Q 036753 475 TNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELI 553 (725)
Q Consensus 475 ~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~l~ 553 (725)
..|-+|..|..|||++|+ +++.|..+..-+++-+|+|++|. +..+|.. +.+|+.|-.|++++| .+..+|+.+..|.
T Consensus 97 ~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLS 173 (1255)
T ss_pred chhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHh
Confidence 999999999999999999 99999999999999999999998 8999987 578999999999998 7899999999999
Q ss_pred cCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcc-----cc
Q 036753 554 RLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEE-----QA 628 (725)
Q Consensus 554 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~-----~~ 628 (725)
.|++|.+.++... -.-+..|+.|+.|..|++++... ....++.++..+.+|..++|+.|+++-.... .+
T Consensus 174 ~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~L 247 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNL 247 (1255)
T ss_pred hhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccc---hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhh
Confidence 9999999877654 34567777888888888876433 2345567888999999999999985321110 00
Q ss_pred cCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC-CCCcCCC-CCCccccceeecc
Q 036753 629 GRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS-NCEHLPP-LGKLKSLESLLIY 706 (725)
Q Consensus 629 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~-~~~~lp~-l~~lp~L~~L~L~ 706 (725)
...+...+...++--......+|++|+++.|..+. + |..+..|++|+.|.+.+|+ ..+.+|. +|+|.+|+.+...
T Consensus 248 rrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~--L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 248 RRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV--L-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred heeccCcCceeeeeccHHHHhhhhhhccccchhcc--c-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 00000000001111111122355555555555555 6 7777778888888888886 5667887 8888888888887
Q ss_pred cccCceEeCccccCC
Q 036753 707 GMQSVKRVGNELSEV 721 (725)
Q Consensus 707 ~~~~l~~i~~~~~~~ 721 (725)
++. |+-+|..++..
T Consensus 325 nN~-LElVPEglcRC 338 (1255)
T KOG0444|consen 325 NNK-LELVPEGLCRC 338 (1255)
T ss_pred ccc-cccCchhhhhh
Confidence 665 88888777654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=1.9e-18 Score=178.25 Aligned_cols=285 Identities=20% Similarity=0.197 Sum_probs=198.9
Q ss_pred cCCcccccccccc-ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEecccc
Q 036753 384 HSGEELAISSFEE-KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRE 462 (725)
Q Consensus 384 ~~~~~~~~~~~~~-~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 462 (725)
+...+++...++. .++.+|.+..+.+..+...- +.++.+|.+|.++.|.++.. .+..|++++.|+.|+|.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~---F~~lnsL~tlkLsrNrittL---p~r~Fk~L~~L~~LdLn--- 229 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGH---FDSLNSLLTLKLSRNRITTL---PQRSFKRLPKLESLDLN--- 229 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecccccccccccc---ccccchheeeecccCccccc---CHHHhhhcchhhhhhcc---
Confidence 3344455444444 57888888888776543332 34677888888988887654 45667889999999998
Q ss_pred CCCcccccccc-ccccccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCC
Q 036753 463 SWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDT 539 (725)
Q Consensus 463 ~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 539 (725)
.|. +... ...+..|..|+.|.+..|. +..|-+ .|..|.++++|+|..|+ +..+.+ ++.+|++|++|+++.|
T Consensus 230 ---rN~-irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 230 ---RNR-IRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred ---ccc-eeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchh
Confidence 777 5544 3457788889999998888 777764 46788899999999888 665554 4788899999999988
Q ss_pred cccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecC
Q 036753 540 GCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDR 619 (725)
Q Consensus 540 ~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 619 (725)
..-..-+++..-..+|++|++..+......+..+..|.. |+.|.+... .........+..+++|+.|+|+.|.
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~---Le~LnLs~N----si~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ---LEELNLSHN----SIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHH---hhhhccccc----chHHHHhhHHHHhhhhhhhcCcCCe
Confidence 655555667777888999998888776544555554444 444444331 1112222446678888999988887
Q ss_pred CCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCcc
Q 036753 620 IRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLK 698 (725)
Q Consensus 620 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp 698 (725)
++.+. ++.-..+..+++|++|.+.||.+.. ++...|..|++|++|+|.+|.....-|. +..+
T Consensus 377 ls~~I--------------EDaa~~f~gl~~LrkL~l~gNqlk~--I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m- 439 (873)
T KOG4194|consen 377 LSWCI--------------EDAAVAFNGLPSLRKLRLTGNQLKS--IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM- 439 (873)
T ss_pred EEEEE--------------ecchhhhccchhhhheeecCceeee--cchhhhccCcccceecCCCCcceeecccccccc-
Confidence 65443 2233456668899999999998877 7567788899999999998853333333 6666
Q ss_pred ccceeeccc
Q 036753 699 SLESLLIYG 707 (725)
Q Consensus 699 ~L~~L~L~~ 707 (725)
.|+.|.+..
T Consensus 440 ~Lk~Lv~nS 448 (873)
T KOG4194|consen 440 ELKELVMNS 448 (873)
T ss_pred hhhhhhhcc
Confidence 788877753
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=3.7e-18 Score=176.12 Aligned_cols=300 Identities=20% Similarity=0.165 Sum_probs=157.4
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~ 475 (725)
.++.+|.+..+.+..+..+- ++.++.||+|+++.|.++.+. ...|+.-.+++.|+|+ +|. +..+ -.
T Consensus 125 ghl~~L~L~~N~I~sv~se~---L~~l~alrslDLSrN~is~i~---~~sfp~~~ni~~L~La------~N~-It~l~~~ 191 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEE---LSALPALRSLDLSRNLISEIP---KPSFPAKVNIKKLNLA------SNR-ITTLETG 191 (873)
T ss_pred cceeEEeeeccccccccHHH---HHhHhhhhhhhhhhchhhccc---CCCCCCCCCceEEeec------ccc-ccccccc
Confidence 56777777766655433322 235666777777777654432 1225555667777776 666 4444 23
Q ss_pred ccccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccccc-cccccCCCcCcEEecCCCcccccCCcc-cCCC
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGCLRYLPAG-IGEL 552 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~l 552 (725)
.+..+.+|-.|.|+.|+ ++.+|. .|.+|++|+.|+|..|. ++.+ --.+..|++|+.|.+..| .+..+-++ |..|
T Consensus 192 ~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGL 268 (873)
T ss_pred cccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhc-CcccccCcceeee
Confidence 46666666777777766 666664 34447777777776665 3332 112444555555555444 22333322 3344
Q ss_pred ccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCccccc---
Q 036753 553 IRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAG--- 629 (725)
Q Consensus 553 ~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~--- 629 (725)
.++++|++..+..... .-+.|-+|+.|+.|+++.. .....-.......++|+.|+|+.|.++.-++..+.
T Consensus 269 ~kme~l~L~~N~l~~v---n~g~lfgLt~L~~L~lS~N----aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAV---NEGWLFGLTSLEQLDLSYN----AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred cccceeecccchhhhh---hcccccccchhhhhccchh----hhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 4444444443332210 1112333333444333331 11111112233344555555555544332222110
Q ss_pred ---CCCCCchhHHHH-hhhcCCCCCCCcEEEeeecCCCCCc-ccccccCccccceeEEcCCCCCCcCCC--CCCccccce
Q 036753 630 ---RRENEEDEDERL-LEALGPPPNLKNLGIDEYRGRRNVV-PKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLES 702 (725)
Q Consensus 630 ---~~~~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~-~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~ 702 (725)
...-..+....+ -..+..+.+|++|+|+.|.+.-.+- ....+..|+.|+.|.|.+| .++.+|. +.+|++|+.
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccce
Confidence 000000001111 1244556788899888876543100 0223447899999999998 7888887 888999999
Q ss_pred eecccccCceEeCccccCC
Q 036753 703 LLIYGMQSVKRVGNELSEV 721 (725)
Q Consensus 703 L~L~~~~~l~~i~~~~~~~ 721 (725)
|+|.+++ +.+|-++.|..
T Consensus 421 LdL~~Na-iaSIq~nAFe~ 438 (873)
T KOG4194|consen 421 LDLGDNA-IASIQPNAFEP 438 (873)
T ss_pred ecCCCCc-ceeeccccccc
Confidence 9999888 88887776653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=4.3e-19 Score=175.31 Aligned_cols=253 Identities=25% Similarity=0.284 Sum_probs=177.1
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
++..|.+|.+.+|.... +|..+..+..+..|+.+ +++ +..+|..++.+..|+.|+.+.|. +.++|++|
T Consensus 66 nL~~l~vl~~~~n~l~~----lp~aig~l~~l~~l~vs------~n~-ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i 133 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQ----LPAAIGELEALKSLNVS------HNK-LSELPEQIGSLISLVKLDCSSNE-LKELPDSI 133 (565)
T ss_pred cccceeEEEeccchhhh----CCHHHHHHHHHHHhhcc------cch-HhhccHHHhhhhhhhhhhccccc-eeecCchH
Confidence 66666777777766432 45556777777777777 666 77777777777777777777777 77777777
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
+.+..|+.|+..+|. +..+|++++.+.+|..|++.+| .+..+|+..-+++.|++|+...+.... .-.+++.|.+
T Consensus 134 ~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~t----lP~~lg~l~~ 207 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLET----LPPELGGLES 207 (565)
T ss_pred HHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhc----CChhhcchhh
Confidence 777777777777766 7777777777777777777777 455566555557777777655444332 2234455555
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhh-hcCCCCCCCcEEEeeec
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLE-ALGPPPNLKNLGIDEYR 660 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~ 660 (725)
|..|++....- .+.+.+.++..|..|+++.|.+ +.++. ....+++|..|+++.|.
T Consensus 208 L~~LyL~~Nki------~~lPef~gcs~L~Elh~g~N~i------------------~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 208 LELLYLRRNKI------RFLPEFPGCSLLKELHVGENQI------------------EMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred hHHHHhhhccc------ccCCCCCccHHHHHHHhcccHH------------------HhhHHHHhcccccceeeeccccc
Confidence 55444432111 1123456677777777776652 33333 34578999999999999
Q ss_pred CCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeecccccCceEeCccccCCC
Q 036753 661 GRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQSVKRVGNELSEVR 722 (725)
Q Consensus 661 ~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~~~~~~~~ 722 (725)
..+ . |..+.-+.+|++|++++| .+..+|. +|.| .|+.|.+.|+| ++.|-.++...+
T Consensus 264 lke--~-Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~g 320 (565)
T KOG0472|consen 264 LKE--V-PDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKG 320 (565)
T ss_pred ccc--C-chHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc-hHHHHHHHHccc
Confidence 988 8 988889999999999999 7788887 9999 99999999999 888777665443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=6.8e-18 Score=166.90 Aligned_cols=252 Identities=24% Similarity=0.294 Sum_probs=207.2
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.-..+..+++.+|.+.. +.+.+.++..|.||++. ++. +..+|.+|+.+..++.|+.++|+ +.++|+.+
T Consensus 43 ~qv~l~~lils~N~l~~----l~~dl~nL~~l~vl~~~------~n~-l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i 110 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEV----LREDLKNLACLTVLNVH------DNK-LSQLPAAIGELEALKSLNVSHNK-LSELPEQI 110 (565)
T ss_pred hhcchhhhhhccCchhh----ccHhhhcccceeEEEec------cch-hhhCCHHHHHHHHHHHhhcccch-HhhccHHH
Confidence 44557778888887543 33348899999999999 888 89999999999999999999999 99999999
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
+.+.+|..|+.++|. +.++|++++.+..|..|+..+| .+.++|.+++++.+|..|.+.++......+..+ .++.
T Consensus 111 ~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i----~m~~ 184 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHI----AMKR 184 (565)
T ss_pred hhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHH----HHHH
Confidence 999999999999998 8999999999999999998877 678899999999999999888776654223322 2555
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRG 661 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 661 (725)
|+.+++.. +.-+.++..++.+.+|.-|+|..|.+ .++..+..|..|+.|++..|.+
T Consensus 185 L~~ld~~~-----N~L~tlP~~lg~l~~L~~LyL~~Nki-------------------~~lPef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 185 LKHLDCNS-----NLLETLPPELGGLESLELLYLRRNKI-------------------RFLPEFPGCSLLKELHVGENQI 240 (565)
T ss_pred HHhcccch-----hhhhcCChhhcchhhhHHHHhhhccc-------------------ccCCCCCccHHHHHHHhcccHH
Confidence 55555432 22345567788999999999999873 2334778889999999999988
Q ss_pred CCCCccccccc-CccccceeEEcCCCCCCcCCC-CCCccccceeecccccCceEeCccccC
Q 036753 662 RRNVVPKNWFM-SLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQSVKRVGNELSE 720 (725)
Q Consensus 662 ~~~~~~p~~l~-~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~~~~~~ 720 (725)
.. + |.... ++++|..|+|++| .++.+|. +..|.+|.+|+++++. +..+|.++..
T Consensus 241 ~~--l-pae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgn 296 (565)
T KOG0472|consen 241 EM--L-PAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGN 296 (565)
T ss_pred Hh--h-HHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCccccc
Confidence 77 7 66665 8999999999999 6888888 7788999999999887 8888887754
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=3.3e-16 Score=137.42 Aligned_cols=183 Identities=25% Similarity=0.270 Sum_probs=131.5
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
+-++.+...|-|++|+ ++.+|+.|..|.+|+.|++.+|+ ++++|..|+.|++|++|+++-| .+..+|.+||.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 4557778888899998 88999999999999999999888 8999999999999999999876 6678899999999999
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCch
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEED 636 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 636 (725)
.|++.++.... ... +..+..+..|+.|+|+.|.+
T Consensus 106 vldltynnl~e--~~l----------------------------pgnff~m~tlralyl~dndf---------------- 139 (264)
T KOG0617|consen 106 VLDLTYNNLNE--NSL----------------------------PGNFFYMTTLRALYLGDNDF---------------- 139 (264)
T ss_pred hhhcccccccc--ccC----------------------------CcchhHHHHHHHHHhcCCCc----------------
Confidence 99887765443 111 12233445566666666642
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCcc---ccceeecccccCce
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLK---SLESLLIYGMQSVK 712 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp---~L~~L~L~~~~~l~ 712 (725)
+-++..++.+.+|+.|.+..|...+ + |..++.+..|+.|++.+| .+..+|+ ++.+. +=+.+.+.++|-+.
T Consensus 140 --e~lp~dvg~lt~lqil~lrdndll~--l-pkeig~lt~lrelhiqgn-rl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 140 --EILPPDVGKLTNLQILSLRDNDLLS--L-PKEIGDLTRLRELHIQGN-RLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred --ccCChhhhhhcceeEEeeccCchhh--C-cHHHHHHHHHHHHhcccc-eeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 3345566667777888887777777 7 777778888888888877 5666665 54433 22344555555444
Q ss_pred Ee
Q 036753 713 RV 714 (725)
Q Consensus 713 ~i 714 (725)
.|
T Consensus 214 pI 215 (264)
T KOG0617|consen 214 PI 215 (264)
T ss_pred hH
Confidence 33
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.2e-13 Score=154.36 Aligned_cols=242 Identities=20% Similarity=0.227 Sum_probs=151.1
Q ss_pred eEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccc
Q 036753 399 ILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIE 478 (725)
Q Consensus 399 ~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~ 478 (725)
...+.+.......+|..++ ++|+.|.+.+|.+.. +|..+. .+|+.|+++ +|. +..+|..+.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip------~~L~~L~Ls~N~Lts----LP~~l~--~nL~~L~Ls------~N~-LtsLP~~l~ 240 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP------EQITTLILDNNELKS----LPENLQ--GNIKTLYAN------SNQ-LTSIPATLP 240 (754)
T ss_pred ceEEEeCCCCcCcCCcccc------cCCcEEEecCCCCCc----CChhhc--cCCCEEECC------CCc-cccCChhhh
Confidence 3445555555554444332 467788888877543 444332 478888887 777 677776553
Q ss_pred cCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCccc
Q 036753 479 KLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRV 558 (725)
Q Consensus 479 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 558 (725)
.+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. ++|++|++++| .+..+|..+. .+|+.|
T Consensus 241 --~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L 309 (754)
T PRK15370 241 --DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHL 309 (754)
T ss_pred --ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHH
Confidence 368888888887 778887664 478888888776 677777654 47888888887 5566776543 367777
Q ss_pred CeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhH
Q 036753 559 REFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDED 638 (725)
Q Consensus 559 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 638 (725)
++.++..... +..+ .++|+.|.+..+.. .. ++..+ .++|+.|+|+.|.++.
T Consensus 310 ~Ls~N~Lt~L-P~~l-----~~sL~~L~Ls~N~L-t~----LP~~l--~~sL~~L~Ls~N~L~~---------------- 360 (754)
T PRK15370 310 NVQSNSLTAL-PETL-----PPGLKTLEAGENAL-TS----LPASL--PPELQVLDVSKNQITV---------------- 360 (754)
T ss_pred HhcCCccccC-Cccc-----cccceeccccCCcc-cc----CChhh--cCcccEEECCCCCCCc----------------
Confidence 7766554431 1111 13455555544321 11 11122 2578888888887421
Q ss_pred HHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-----CCCccccceeeccccc
Q 036753 639 ERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-----LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 639 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-----l~~lp~L~~L~L~~~~ 709 (725)
++..+ +++|+.|+|++|.+.. + |..+. .+|+.|++++| .+..+|. .+.+|++..|++.+++
T Consensus 361 --LP~~l--p~~L~~LdLs~N~Lt~--L-P~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 361 --LPETL--PPTITTLDVSRNALTN--L-PENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --CChhh--cCCcCEEECCCCcCCC--C-CHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 11222 3578888888888776 7 55442 46888888887 4556654 3445778888888776
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=5.9e-14 Score=161.40 Aligned_cols=255 Identities=26% Similarity=0.301 Sum_probs=171.6
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccc-cccccc-ccccCccccEEEeecCCCccccch
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSL-IKEIPT-NIEKLLHLKYLNLKGQKKIENLPE 499 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~-~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~ 499 (725)
+....|.+.+.++.+... +. -...+.|+.|-+. ++.. +..++. .+..+++|++|||++|..+.+||.
T Consensus 521 ~~~~~rr~s~~~~~~~~~----~~-~~~~~~L~tLll~------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI----AG-SSENPKLRTLLLQ------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred chhheeEEEEeccchhhc----cC-CCCCCccceEEEe------ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 445667777766664322 21 2344578888887 6642 444443 477899999999999998999999
Q ss_pred hhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccC
Q 036753 500 TLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKL 579 (725)
Q Consensus 500 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L 579 (725)
+|++|-+|++|+++++. +..+|.++++|++|.+|++..+..+..+|..+..|++|++|.++..... .....+.++.+|
T Consensus 590 ~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~L 667 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENL 667 (889)
T ss_pred HHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcc
Confidence 99999999999999998 8999999999999999999999877777666777999999999877622 135677888888
Q ss_pred CCCCceEEeCcCCCCChhhhhhhccccccccCc----EEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEE
Q 036753 580 NFLQQCGIRGLGGVSDAGEAARAELEKKKYLLK----LGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLG 655 (725)
Q Consensus 580 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~----L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 655 (725)
.+|+.+.+..... .....+..+..|.+ +.+.++. .......+..+++|+.|.
T Consensus 668 e~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~------------------~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 668 EHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCS------------------KRTLISSLGSLGNLEELS 723 (889)
T ss_pred cchhhheeecchh------HhHhhhhhhHHHHHHhHhhhhcccc------------------cceeecccccccCcceEE
Confidence 8888888755322 01111223333332 2222211 122344556678888888
Q ss_pred EeeecCCCCCccccccc-----C-ccccceeEEcCCCCCCcCCCCCCccccceeecccccCceEeC
Q 036753 656 IDEYRGRRNVVPKNWFM-----S-LTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKRVG 715 (725)
Q Consensus 656 L~~~~~~~~~~~p~~l~-----~-l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~i~ 715 (725)
+.+|.+.+ ....|.. . +++|..+.+.+|.....+.+..-.|+|+.|.+..|+.++.+.
T Consensus 724 i~~~~~~e--~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 724 ILDCGISE--IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred EEcCCCch--hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 88887764 2123322 2 445666666666555555544455666666666666555443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=2.3e-15 Score=132.16 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=116.7
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
+++++.-|.+++|.++. .|..+..+++|++|++. +|. ++++|.+|++|+.||.|++.-|+ +..+|..+
T Consensus 31 ~~s~ITrLtLSHNKl~~----vppnia~l~nlevln~~------nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV----VPPNIAELKNLEVLNLS------NNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCceee----cCCcHHHhhhhhhhhcc------cch-hhhcChhhhhchhhhheecchhh-hhcCcccc
Confidence 67777778888887643 34457888888888887 777 88888888888888888888887 88888888
Q ss_pred hcCCCCcEeecCCCccc-ccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCC
Q 036753 502 CELYNLECLNVDDCQNL-RELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLN 580 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 580 (725)
+.++-|+.||+++|..- ..+|..+..+..|+.|+++.| ....+|..++++++||.|.+..+.... .-++++.|+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~----lpkeig~lt 173 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS----LPKEIGDLT 173 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh----CcHHHHHHH
Confidence 88888888888877622 358888888888888888888 457788888888888888777665433 345667777
Q ss_pred CCCceEEeC
Q 036753 581 FLQQCGIRG 589 (725)
Q Consensus 581 ~L~~L~i~~ 589 (725)
+|+.|+|.+
T Consensus 174 ~lrelhiqg 182 (264)
T KOG0617|consen 174 RLRELHIQG 182 (264)
T ss_pred HHHHHhccc
Confidence 777777765
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=4.4e-12 Score=142.99 Aligned_cols=234 Identities=22% Similarity=0.137 Sum_probs=146.3
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+..+|. ..++|++|.+.+|.+.. +|. ..++|+.|+++ +|. +..+|..
T Consensus 222 ~~L~~L~L~~N~Lt~LP~-------lp~~Lk~LdLs~N~Lts----LP~---lp~sL~~L~Ls------~N~-L~~Lp~l 280 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA-------LPPELRTLEVSGNQLTS----LPV---LPPGLLELSIF------SNP-LTHLPAL 280 (788)
T ss_pred cCCCEEEccCCcCCCCCC-------CCCCCcEEEecCCccCc----ccC---cccccceeecc------CCc-hhhhhhc
Confidence 467777777776664442 35678888888887653 332 13577888887 776 6666653
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
...|+.|++++|. ++.+|.. +++|+.|++++|. +..+|... .+|+.|++++| .+..+|.. ..+|+
T Consensus 281 ---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l---p~~Lq 345 (788)
T PRK15387 281 ---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNN-QLTSLPTL---PSGLQ 345 (788)
T ss_pred ---hhhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccC-cccccccc---ccccc
Confidence 2457788888887 7777763 4678888888886 66676532 35667777776 45556642 24677
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCch
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEED 636 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 636 (725)
.|++.++.... .+... .+|+.|.+.+..- .. ++. ...+|+.|+|+.|.++..
T Consensus 346 ~LdLS~N~Ls~-LP~lp------~~L~~L~Ls~N~L-~~----LP~---l~~~L~~LdLs~N~Lt~L------------- 397 (788)
T PRK15387 346 ELSVSDNQLAS-LPTLP------SELYKLWAYNNRL-TS----LPA---LPSGLKELIVSGNRLTSL------------- 397 (788)
T ss_pred eEecCCCccCC-CCCCC------cccceehhhcccc-cc----Ccc---cccccceEEecCCcccCC-------------
Confidence 77777665443 11111 2233333332110 10 111 124678888887764211
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeeccccc
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~ 709 (725)
+. .+++|+.|++++|.+.. + |.. +.+|+.|++++| .+..+|. ++.+++|+.|+|++|+
T Consensus 398 -----P~---l~s~L~~LdLS~N~Lss--I-P~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 398 -----PV---LPSELKELMVSGNRLTS--L-PML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -----CC---cccCCCEEEccCCcCCC--C-Ccc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 11 13578888888888776 6 643 356778888887 4667776 7788888888888887
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.37 E-value=3.6e-14 Score=154.84 Aligned_cols=263 Identities=19% Similarity=0.157 Sum_probs=177.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
...++|....+........ + .-.+|.+++++.+.++. +|+.+..+.+|+.|+.. .|. +..+|..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~-p----~p~nl~~~dis~n~l~~----lp~wi~~~~nle~l~~n------~N~-l~~lp~r 282 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH-P----VPLNLQYLDISHNNLSN----LPEWIGACANLEALNAN------HNR-LVALPLR 282 (1081)
T ss_pred cchheeeeccCcceeeccc-c----ccccceeeecchhhhhc----chHHHHhcccceEeccc------chh-HHhhHHH
Confidence 3555555555544311111 1 34567777777776543 56667778888888887 777 6777877
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccccccc-CCC-cCcEEecCCCcccccCCcc-cCCCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIG-KLR-KLMYLHNEDTGCLRYLPAG-IGELI 553 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~-~L~-~L~~L~l~~~~~~~~lp~~-i~~l~ 553 (725)
+.....|++|++..|. +..+|+...++++|++|||..|. +..+|..+- .+. +|+.|+.+.+ .+...|.. =...+
T Consensus 283 i~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHA 359 (1081)
T ss_pred HhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhH
Confidence 8888888888888887 78888877778888888888776 777776432 222 3566666555 34445521 22456
Q ss_pred cCcccCeEEEcCcCCCccCccccccCCCCCceEEeCc--CCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCC
Q 036753 554 RLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGL--GGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRR 631 (725)
Q Consensus 554 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~--~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~ 631 (725)
.|+.|++.++... ...+.-|.+..+|+.|+++.. ..++ .+.+.++..|+.|+|++|.+
T Consensus 360 ~Lq~LylanN~Lt---d~c~p~l~~~~hLKVLhLsyNrL~~fp------as~~~kle~LeeL~LSGNkL----------- 419 (1081)
T KOG0618|consen 360 ALQELYLANNHLT---DSCFPVLVNFKHLKVLHLSYNRLNSFP------ASKLRKLEELEELNLSGNKL----------- 419 (1081)
T ss_pred HHHHHHHhcCccc---ccchhhhccccceeeeeecccccccCC------HHHHhchHHhHHHhcccchh-----------
Confidence 7788888777665 344566778888888888763 2222 14567788899999999873
Q ss_pred CCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCC--cCCCCCCccccceeeccccc
Q 036753 632 ENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCE--HLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 632 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~--~lp~l~~lp~L~~L~L~~~~ 709 (725)
..+++.+..++.|++|...+|.+.. + | .+..++.|+.++|+.|. +. .+|....-|+|++|++++++
T Consensus 420 -------~~Lp~tva~~~~L~tL~ahsN~l~~--f-P-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 420 -------TTLPDTVANLGRLHTLRAHSNQLLS--F-P-ELAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -------hhhhHHHHhhhhhHHHhhcCCceee--c-h-hhhhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCc
Confidence 4556677778888888888888877 7 7 56688888899988774 33 23332112788999988887
Q ss_pred C
Q 036753 710 S 710 (725)
Q Consensus 710 ~ 710 (725)
.
T Consensus 488 ~ 488 (1081)
T KOG0618|consen 488 R 488 (1081)
T ss_pred c
Confidence 4
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=2.2e-14 Score=156.53 Aligned_cols=246 Identities=17% Similarity=0.162 Sum_probs=166.5
Q ss_pred cccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhh
Q 036753 423 LRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLC 502 (725)
Q Consensus 423 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~ 502 (725)
-++|+.|....|.+... .+ -+.-.+|++++++ .+. +..+|+.++.+.+|..|+..+|. +..+|..+.
T Consensus 218 g~~l~~L~a~~n~l~~~---~~--~p~p~nl~~~dis------~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~ 284 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTL---DV--HPVPLNLQYLDIS------HNN-LSNLPEWIGACANLEALNANHNR-LVALPLRIS 284 (1081)
T ss_pred CcchheeeeccCcceee---cc--ccccccceeeecc------hhh-hhcchHHHHhcccceEecccchh-HHhhHHHHh
Confidence 45566666666665321 11 1223567788887 777 77778778888888888888877 778888888
Q ss_pred cCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCC-c-cCcccCeEEEcCcCCCccCccccccCC
Q 036753 503 ELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGEL-I-RLRRVREFVVGGGYDRACSLGSLKKLN 580 (725)
Q Consensus 503 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l-~-~L~~L~~~~~~~~~~~~~~~~~L~~L~ 580 (725)
..++|+.|.+..|. ++.+|+....++.|++|++..| .+..+|+.+-.. . +|..|....+..... + ..++ ..+.
T Consensus 285 ~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l-p-~~~e-~~~~ 359 (1081)
T KOG0618|consen 285 RITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTL-P-SYEE-NNHA 359 (1081)
T ss_pred hhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcccccc-c-cccc-hhhH
Confidence 88888888888777 7778877777888888888777 566666632211 1 233443332222210 0 0000 1122
Q ss_pred CCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHh-hhcCCCCCCCcEEEeee
Q 036753 581 FLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLL-EALGPPPNLKNLGIDEY 659 (725)
Q Consensus 581 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~L~~~ 659 (725)
.|+.|.+.+ ....+..++.+.+.++|+.|+|++|++. .++ ..+.+++.|+.|+|+||
T Consensus 360 ~Lq~Lylan----N~Ltd~c~p~l~~~~hLKVLhLsyNrL~------------------~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 360 ALQELYLAN----NHLTDSCFPVLVNFKHLKVLHLSYNRLN------------------SFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHHHHHHhc----Ccccccchhhhccccceeeeeecccccc------------------cCCHHHHhchHHhHHHhcccc
Confidence 233344433 2233555677888999999999999742 122 24567888999999999
Q ss_pred cCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeecccccCceE
Q 036753 660 RGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKR 713 (725)
Q Consensus 660 ~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~ 713 (725)
...+ + |..+..++.|+.|...+| .+...|.+.++|.|+.++++.+. |..
T Consensus 418 kL~~--L-p~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~-L~~ 466 (1081)
T KOG0618|consen 418 KLTT--L-PDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNN-LSE 466 (1081)
T ss_pred hhhh--h-hHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccch-hhh
Confidence 9998 8 888889999999999888 78888999999999999998653 543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=1.8e-12 Score=147.00 Aligned_cols=229 Identities=17% Similarity=0.210 Sum_probs=162.8
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhc
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCE 503 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~ 503 (725)
.+...|.+.++.++. +|..+. +.|+.|+|+ +|. +..+|..+. .+|++|++++|. ++.+|..+.
T Consensus 178 ~~~~~L~L~~~~Lts----LP~~Ip--~~L~~L~Ls------~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~- 240 (754)
T PRK15370 178 NNKTELRLKILGLTT----IPACIP--EQITTLILD------NNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP- 240 (754)
T ss_pred cCceEEEeCCCCcCc----CCcccc--cCCcEEEec------CCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh-
Confidence 345678888776543 444332 479999999 888 888988764 589999999998 889998765
Q ss_pred CCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCC
Q 036753 504 LYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQ 583 (725)
Q Consensus 504 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~ 583 (725)
.+|+.|++++|. +..+|..+. .+|+.|++++| .+..+|..+. .+|+.|++.++..... +.. +. ..|+
T Consensus 241 -~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~---lp--~sL~ 307 (754)
T PRK15370 241 -DTIQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTL-PAH---LP--SGIT 307 (754)
T ss_pred -ccccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccC-ccc---ch--hhHH
Confidence 489999999998 778998764 58999999977 6678887765 4899998877655431 111 11 2355
Q ss_pred ceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCC
Q 036753 584 QCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRR 663 (725)
Q Consensus 584 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 663 (725)
.|++..... .. ++..+ .++|+.|+++.|.++. ++..+ +++|+.|+|++|.+..
T Consensus 308 ~L~Ls~N~L-t~----LP~~l--~~sL~~L~Ls~N~Lt~------------------LP~~l--~~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 308 HLNVQSNSL-TA----LPETL--PPGLKTLEAGENALTS------------------LPASL--PPELQVLDVSKNQITV 360 (754)
T ss_pred HHHhcCCcc-cc----CCccc--cccceeccccCCcccc------------------CChhh--cCcccEEECCCCCCCc
Confidence 555544221 11 11111 2579999999887422 12222 3789999999999877
Q ss_pred CCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeecccccCceEeCccc
Q 036753 664 NVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQSVKRVGNEL 718 (725)
Q Consensus 664 ~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~~~~ 718 (725)
+ |..+ .++|+.|+|++| .+..+|. +. ++|+.|++++|. +..+|..+
T Consensus 361 --L-P~~l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl 407 (754)
T PRK15370 361 --L-PETL--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN-LVRLPESL 407 (754)
T ss_pred --C-Chhh--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC-cccCchhH
Confidence 7 6655 378999999999 5667776 32 479999999876 77887654
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=1.2e-11 Score=139.60 Aligned_cols=240 Identities=23% Similarity=0.187 Sum_probs=167.0
Q ss_pred EEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccC
Q 036753 401 HLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKL 480 (725)
Q Consensus 401 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l 480 (725)
.|.+..+....+|..++ ++|+.|.+.+|.+.. +|. .+++|++|+|+ +|. +..+|.. .
T Consensus 205 ~LdLs~~~LtsLP~~l~------~~L~~L~L~~N~Lt~----LP~---lp~~Lk~LdLs------~N~-LtsLP~l---p 261 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP------AHITTLVIPDNNLTS----LPA---LPPELRTLEVS------GNQ-LTSLPVL---P 261 (788)
T ss_pred EEEcCCCCCCcCCcchh------cCCCEEEccCCcCCC----CCC---CCCCCcEEEec------CCc-cCcccCc---c
Confidence 34555555555555443 378999999988653 343 25789999999 887 8888863 4
Q ss_pred ccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCe
Q 036753 481 LHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 560 (725)
Q Consensus 481 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~ 560 (725)
.+|+.|++++|. +..+|... .+|+.|++++|. +..+|.. +++|+.|++++| .+..+|... .+|+.|.+
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKLWA 329 (788)
T ss_pred cccceeeccCCc-hhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCc---cccccccc
Confidence 689999999998 88888743 578899999998 8888863 578999999998 566777533 35667776
Q ss_pred EEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHH
Q 036753 561 FVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDER 640 (725)
Q Consensus 561 ~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 640 (725)
.++.... +..+ ..+|+.|++++..- .. ++. ...+|+.|+++.|.+..
T Consensus 330 s~N~L~~-----LP~l--p~~Lq~LdLS~N~L-s~----LP~---lp~~L~~L~Ls~N~L~~------------------ 376 (788)
T PRK15387 330 YNNQLTS-----LPTL--PSGLQELSVSDNQL-AS----LPT---LPSELYKLWAYNNRLTS------------------ 376 (788)
T ss_pred ccCcccc-----cccc--ccccceEecCCCcc-CC----CCC---CCcccceehhhcccccc------------------
Confidence 6654432 1111 13577777765321 11 111 12467888888877421
Q ss_pred HhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeecccccCceEeCccccC
Q 036753 641 LLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKRVGNELSE 720 (725)
Q Consensus 641 ~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~i~~~~~~ 720 (725)
++. .+.+|+.|+|++|.+.. + |.. .++|+.|++++| .+..+|.+ +.+|+.|++++|. ++.+|..++.
T Consensus 377 LP~---l~~~L~~LdLs~N~Lt~--L-P~l---~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~sl~~ 443 (788)
T PRK15387 377 LPA---LPSGLKELIVSGNRLTS--L-PVL---PSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQ-LTRLPESLIH 443 (788)
T ss_pred Ccc---cccccceEEecCCcccC--C-CCc---ccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccCc-ccccChHHhh
Confidence 111 13579999999999887 7 643 468999999999 56778863 3578999999877 8899987654
Q ss_pred C
Q 036753 721 V 721 (725)
Q Consensus 721 ~ 721 (725)
.
T Consensus 444 L 444 (788)
T PRK15387 444 L 444 (788)
T ss_pred c
Confidence 3
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=7.8e-13 Score=138.85 Aligned_cols=268 Identities=19% Similarity=0.114 Sum_probs=159.0
Q ss_pred CcccccEEEeccCCccccc-cchhHHhhcCCcceEEEeccccCCCccccc------cccccccccCccccEEEeecCCCc
Q 036753 422 GLRGLRSLLVKSDEYSWSS-EGLPQLFEKLTCLRALELQVRESWPRNSLI------KEIPTNIEKLLHLKYLNLKGQKKI 494 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~------~~lp~~i~~l~~Lr~L~L~~~~~i 494 (725)
.+.+|+.|.+.++.+.... ..++..+...+.|+.|+++ ++... ..++..+..+++|++|++++|...
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~------~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS------LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc------ccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 5667888999888763211 1245556777888899888 54411 224456677888999999988843
Q ss_pred cccchhhhcCCC---CcEeecCCCcccc----cccccccCC-CcCcEEecCCCcccc----cCCcccCCCccCcccCeEE
Q 036753 495 ENLPETLCELYN---LECLNVDDCQNLR----ELPRGIGKL-RKLMYLHNEDTGCLR----YLPAGIGELIRLRRVREFV 562 (725)
Q Consensus 495 ~~lp~~i~~L~~---L~~L~l~~~~~l~----~lp~~i~~L-~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~~~~ 562 (725)
...+..+..+.+ |++|++++|.... .++..+..+ ++|+.|++++|.... .++..+..+++|++|++..
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 356666666665 9999998887321 233445666 788999998885331 2334455667788887766
Q ss_pred EcCcCC-CccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHH
Q 036753 563 VGGGYD-RACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERL 641 (725)
Q Consensus 563 ~~~~~~-~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 641 (725)
+..... .......+..+++|+.|++.++.........+...+..+++|+.|++++|.+++. ....+
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-------------~~~~l 241 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA-------------GAAAL 241 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH-------------HHHHH
Confidence 554320 0111223455567777777765432222233445566677888888887764221 11122
Q ss_pred hhhc-CCCCCCCcEEEeeecCCCCC---cccccccCccccceeEEcCCCCCCc----CCC-CCCc-cccceeeccccc
Q 036753 642 LEAL-GPPPNLKNLGIDEYRGRRNV---VPKNWFMSLTNLRDLSLFWWSNCEH----LPP-LGKL-KSLESLLIYGMQ 709 (725)
Q Consensus 642 ~~~l-~~~~~L~~L~L~~~~~~~~~---~~p~~l~~l~~L~~L~L~~c~~~~~----lp~-l~~l-p~L~~L~L~~~~ 709 (725)
...+ .+.+.|++|++.+|.+.... + ...+..+++|++|++++|..... +.. +... +.|++|++.+++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDL-AEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHH-HHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2222 13567888888888764200 1 22233557788888888753221 221 3334 577777776654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=3.3e-13 Score=133.95 Aligned_cols=259 Identities=22% Similarity=0.214 Sum_probs=171.6
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccch-hh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPE-TL 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~-~i 501 (725)
+....+.+..|.++.+ .+..|+.+++||.|||+ .|. ++.+ |..+..|..|-.|-+.++..|+.+|. .|
T Consensus 67 ~~tveirLdqN~I~~i---P~~aF~~l~~LRrLdLS------~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSI---PPGAFKTLHRLRRLDLS------KNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcceEEEeccCCcccC---Chhhccchhhhceeccc------ccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 3456778888886544 67789999999999999 888 6654 88899999988887777444999996 67
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCc-ccCCCccCcccCeEEEcCcCCCccCccccccCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREFVVGGGYDRACSLGSLKKLN 580 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 580 (725)
++|..|+.|.+.-|+..-.....+..|++|..|.+..| ....++. .+..+.+++++.+..+.... ..+|+
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic--------dCnL~ 207 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC--------DCNLP 207 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc--------ccccc
Confidence 89999999999888733344445888999999999888 5566776 57888888888765443211 11122
Q ss_pred CCCc----eEE--eCcCCCCChh--hhhhhcccccc---ccCcE--EE-EecCCCCCCcccccCCCCCchhHHHHhhhcC
Q 036753 581 FLQQ----CGI--RGLGGVSDAG--EAARAELEKKK---YLLKL--GL-HFDRIRDGDEEQAGRRENEEDEDERLLEALG 646 (725)
Q Consensus 581 ~L~~----L~i--~~~~~~~~~~--~~~~~~l~~~~---~L~~L--~L-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 646 (725)
.|.. +.+ .+...+.... -.....+...+ .++.+ .+ +.+.. + ...--..+.
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~-d---------------~~cP~~cf~ 271 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP-D---------------SICPAKCFK 271 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc-C---------------CcChHHHHh
Confidence 1111 111 0000000000 00000000000 11111 11 11110 0 011112477
Q ss_pred CCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeecccccCceEeCccccCC
Q 036753 647 PPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQSVKRVGNELSEV 721 (725)
Q Consensus 647 ~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~~l~~i~~~~~~~ 721 (725)
.+++|++|+|++|.+.. +.+.||..+..|+.|.|..| .++.+.. +.++..|+.|+|+++. |+.+.+.+|..
T Consensus 272 ~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~ 344 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITR--IEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQT 344 (498)
T ss_pred hcccceEeccCCCccch--hhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe-eEEEecccccc
Confidence 88999999999999988 77999999999999999999 5665554 7889999999999998 88887777654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=1.2e-12 Score=137.35 Aligned_cols=244 Identities=21% Similarity=0.160 Sum_probs=113.8
Q ss_pred hHHhhcCCcceEEEeccccCCCcccc----ccccccccccCccccEEEeecCCCcc-------ccchhhhcCCCCcEeec
Q 036753 444 PQLFEKLTCLRALELQVRESWPRNSL----IKEIPTNIEKLLHLKYLNLKGQKKIE-------NLPETLCELYNLECLNV 512 (725)
Q Consensus 444 ~~~~~~l~~Lr~L~L~~~~~~~~~~~----~~~lp~~i~~l~~Lr~L~L~~~~~i~-------~lp~~i~~L~~L~~L~l 512 (725)
...+..+..|++|+++ ++.. ...++..+...+.|++|+++++. +. .++..+.++++|+.|++
T Consensus 16 ~~~~~~l~~L~~l~l~------~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 16 TELLPKLLCLQVLRLE------GNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred HHHHHHHhhccEEeec------CCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEc
Confidence 3345555556666666 4441 12244445555556666666654 32 13344555666666666
Q ss_pred CCCcccccccccccCCCc---CcEEecCCCcccc----cCCcccCCC-ccCcccCeEEEcCcCCC-ccCccccccCCCCC
Q 036753 513 DDCQNLRELPRGIGKLRK---LMYLHNEDTGCLR----YLPAGIGEL-IRLRRVREFVVGGGYDR-ACSLGSLKKLNFLQ 583 (725)
Q Consensus 513 ~~~~~l~~lp~~i~~L~~---L~~L~l~~~~~~~----~lp~~i~~l-~~L~~L~~~~~~~~~~~-~~~~~~L~~L~~L~ 583 (725)
++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++.++...... ......+..+++|+
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~ 168 (319)
T cd00116 89 SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168 (319)
T ss_pred cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence 666533333434433333 6666666653221 112233444 56666666555443200 11122344455566
Q ss_pred ceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCC
Q 036753 584 QCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRR 663 (725)
Q Consensus 584 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 663 (725)
.|++..+.-.......+...+...++|+.|++++|.+.+. ....+...+..+++|++|++++|....
T Consensus 169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-------------~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE-------------GASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH-------------HHHHHHHHhcccCCCCEEecCCCcCch
Confidence 6655543221111122223344445666666666653211 112334445555666666666665432
Q ss_pred CCccccccc-----CccccceeEEcCCCCC----CcCCC-CCCccccceeeccccc
Q 036753 664 NVVPKNWFM-----SLTNLRDLSLFWWSNC----EHLPP-LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 664 ~~~~p~~l~-----~l~~L~~L~L~~c~~~----~~lp~-l~~lp~L~~L~L~~~~ 709 (725)
..+..+. ..+.|++|++.+|... ..+.. +..+++|++|++++|.
T Consensus 236 --~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 236 --AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred --HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 1011111 1256666666666321 01111 3344566666666554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=1.6e-12 Score=129.14 Aligned_cols=129 Identities=23% Similarity=0.351 Sum_probs=108.3
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCc-ccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPR-NSLIKEIPT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-~~~~~~lp~ 475 (725)
.+...+.+..+.+..+|...+ +.+++||.|++++|.++.+ -|+.|.+++.|-.|-+. + |+ +..+|+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF---~~l~~LRrLdLS~N~Is~I---~p~AF~GL~~l~~Lvly------g~Nk-I~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAF---KTLHRLRRLDLSKNNISFI---APDAFKGLASLLSLVLY------GNNK-ITDLPK 133 (498)
T ss_pred CcceEEEeccCCcccCChhhc---cchhhhceecccccchhhc---ChHhhhhhHhhhHHHhh------cCCc-hhhhhh
Confidence 577788888888887776655 4899999999999998655 58889999999888887 6 55 999987
Q ss_pred c-cccCccccEEEeecCCCccccc-hhhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCc
Q 036753 476 N-IEKLLHLKYLNLKGQKKIENLP-ETLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTG 540 (725)
Q Consensus 476 ~-i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 540 (725)
. ++.|..|+-|.+.-|+ +..++ ..+..|++|..|.+.+|. ++.++. .+..+..++++++..|.
T Consensus 134 ~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 5 7899999999999888 66554 678999999999999988 788887 57888999999988775
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=2.1e-10 Score=119.41 Aligned_cols=192 Identities=24% Similarity=0.294 Sum_probs=121.2
Q ss_pred ccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCC
Q 036753 426 LRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELY 505 (725)
Q Consensus 426 L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~ 505 (725)
....+++.|.+.. +|..+..|..|..|.|. .|. +..+|..+++|..|.||+|+.|. +..+|..++.|+
T Consensus 77 t~~aDlsrNR~~e----lp~~~~~f~~Le~liLy------~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp 144 (722)
T KOG0532|consen 77 TVFADLSRNRFSE----LPEEACAFVSLESLILY------HNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP 144 (722)
T ss_pred hhhhhcccccccc----CchHHHHHHHHHHHHHH------hcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc
Confidence 3344455554322 45556666667777776 555 66677777777777777777777 777777777665
Q ss_pred CCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCce
Q 036753 506 NLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQC 585 (725)
Q Consensus 506 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L 585 (725)
|+.|-+++|+ ++.+|..|+.+..|.+|+.+.| .+..+|..++.+.+|+.|.+..+.... .
T Consensus 145 -Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~----l------------- 204 (722)
T KOG0532|consen 145 -LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLED----L------------- 204 (722)
T ss_pred -ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhh----C-------------
Confidence 6777777766 7777777777777777777766 456667667766666666554433221 1
Q ss_pred EEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCC
Q 036753 586 GIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNV 665 (725)
Q Consensus 586 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 665 (725)
+..+.. -.|.+|++++|++ ..++-.+..+..|++|.|.+|+...
T Consensus 205 ---------------p~El~~-LpLi~lDfScNki------------------s~iPv~fr~m~~Lq~l~LenNPLqS-- 248 (722)
T KOG0532|consen 205 ---------------PEELCS-LPLIRLDFSCNKI------------------SYLPVDFRKMRHLQVLQLENNPLQS-- 248 (722)
T ss_pred ---------------CHHHhC-CceeeeecccCce------------------eecchhhhhhhhheeeeeccCCCCC--
Confidence 111221 2466677777763 2345567778888888888888766
Q ss_pred ccccccc---CccccceeEEcCCC
Q 036753 666 VPKNWFM---SLTNLRDLSLFWWS 686 (725)
Q Consensus 666 ~~p~~l~---~l~~L~~L~L~~c~ 686 (725)
- |.-+. ...-.++|+...|.
T Consensus 249 P-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 249 P-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-hHHHHhccceeeeeeecchhcc
Confidence 3 54443 34556777877774
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=3.8e-09 Score=114.26 Aligned_cols=198 Identities=31% Similarity=0.336 Sum_probs=144.8
Q ss_pred EEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCc-cccEEEeecCCCccccchhhhcCCC
Q 036753 428 SLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLL-HLKYLNLKGQKKIENLPETLCELYN 506 (725)
Q Consensus 428 ~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~-~Lr~L~L~~~~~i~~lp~~i~~L~~ 506 (725)
.+....+.... ....+..++.+..|++. ++. +..+|..++.+. +|++|++++|. +..+|..++.+++
T Consensus 97 ~l~~~~~~~~~----~~~~~~~~~~l~~L~l~------~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLRS----NISELLELTNLTSLDLD------NNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPN 164 (394)
T ss_pred eeecccccccc----CchhhhcccceeEEecC------Ccc-cccCccccccchhhcccccccccc-hhhhhhhhhcccc
Confidence 45555555311 12235666889999998 777 888988888885 99999999999 9999888999999
Q ss_pred CcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceE
Q 036753 507 LECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCG 586 (725)
Q Consensus 507 L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 586 (725)
|+.|++++|. +..+|...+.+++|+.|++++| .+..+|..++.+..|++|.+..+.... .+
T Consensus 165 L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~----~~------------- 225 (394)
T COG4886 165 LKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIE----LL------------- 225 (394)
T ss_pred ccccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCccee----cc-------------
Confidence 9999999998 8899987778999999999998 678888877666678877765543110 11
Q ss_pred EeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCc
Q 036753 587 IRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVV 666 (725)
Q Consensus 587 i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 666 (725)
..+.++.++..|.+..+.+ ..++..+..+++|+.|++++|.+.. +
T Consensus 226 ---------------~~~~~~~~l~~l~l~~n~~------------------~~~~~~~~~l~~l~~L~~s~n~i~~--i 270 (394)
T COG4886 226 ---------------SSLSNLKNLSGLELSNNKL------------------EDLPESIGNLSNLETLDLSNNQISS--I 270 (394)
T ss_pred ---------------hhhhhcccccccccCCcee------------------eeccchhccccccceeccccccccc--c
Confidence 1123344444455444441 1124566778889999999999888 6
Q ss_pred ccccccCccccceeEEcCCCCCCcCCC
Q 036753 667 PKNWFMSLTNLRDLSLFWWSNCEHLPP 693 (725)
Q Consensus 667 ~p~~l~~l~~L~~L~L~~c~~~~~lp~ 693 (725)
+. ++.+.+|+.|+++++.....+|.
T Consensus 271 -~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 271 -SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -cc-ccccCccCEEeccCccccccchh
Confidence 44 88899999999999866655554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=2e-08 Score=93.16 Aligned_cols=129 Identities=25% Similarity=0.273 Sum_probs=51.4
Q ss_pred CcccccEEEeccCCccccccchhHHhh-cCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFE-KLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPET 500 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~ 500 (725)
+..+++.|.+.++.++.+.. +. .+.+|++|+|+ +|. +..++ .+..+++|+.|++++|. ++.+++.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls------~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLS------NNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------S-------TT-TT--EEE-T------TS---S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECC------CCC-Ccccc-CccChhhhhhcccCCCC-CCccccc
Confidence 56678899999988754422 43 57889999999 888 77774 57789999999999998 8888765
Q ss_pred h-hcCCCCcEeecCCCcccccccc--cccCCCcCcEEecCCCcccccCCc----ccCCCccCcccCeEEEcCc
Q 036753 501 L-CELYNLECLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYLPA----GIGELIRLRRVREFVVGGG 566 (725)
Q Consensus 501 i-~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~~~~~~~~ 566 (725)
+ ..+++|++|++++|. +..+-. .+..+++|+.|++.+|+.. ..+. -+..+++|+.|+...+...
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEccHH
Confidence 6 468999999999987 554432 4677889999999988543 2232 2566777877776655443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.63 E-value=7.2e-09 Score=96.05 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=34.7
Q ss_pred hhcCCcceEEEeccccCCCccccccccccccc-cCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccc
Q 036753 447 FEKLTCLRALELQVRESWPRNSLIKEIPTNIE-KLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGI 525 (725)
Q Consensus 447 ~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~-~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i 525 (725)
+.+...++.|+|. ++. +..+ +.++ .+.+|+.|++++|. ++.++. +..+++|++|++++|. +..++..+
T Consensus 15 ~~n~~~~~~L~L~------~n~-I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLR------GNQ-ISTI-ENLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHH
T ss_pred ccccccccccccc------ccc-cccc-cchhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccch
Confidence 4555678999998 777 6665 3466 57889999999998 888864 8889999999999988 77776655
Q ss_pred -cCCCcCcEEecCCCcccccCC--cccCCCccCcccCeEEEc
Q 036753 526 -GKLRKLMYLHNEDTGCLRYLP--AGIGELIRLRRVREFVVG 564 (725)
Q Consensus 526 -~~L~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~~~~~~ 564 (725)
..+++|++|++++| .+..+. ..+..+++|+.|++.++.
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 36889999999888 333332 123445555555554443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=3.5e-09 Score=110.55 Aligned_cols=152 Identities=24% Similarity=0.310 Sum_probs=118.3
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
++..|..|+++.|.++. +|..+..|+ |++|-++ +|+ +..+|..|+.+.+|..|+.+.|. +..+|..+
T Consensus 119 ~L~~lt~l~ls~NqlS~----lp~~lC~lp-Lkvli~s------NNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql 185 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSH----LPDGLCDLP-LKVLIVS------NNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQL 185 (722)
T ss_pred hhhHHHHhhhccchhhc----CChhhhcCc-ceeEEEe------cCc-cccCCcccccchhHHHhhhhhhh-hhhchHHh
Confidence 77888888888887643 455555554 8888888 777 88899999988889999999888 88899999
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
++|.+|+.|.++.|. +..+|+.+..| .|..|+++.| ++..+|-.|.+|+.||+|.+-++.... ++..+..-++..-
T Consensus 186 ~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHI 261 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHI 261 (722)
T ss_pred hhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceee
Confidence 999999999999887 88888888754 5888898866 778899999999999999887776554 4445555555555
Q ss_pred CCceEEeCc
Q 036753 582 LQQCGIRGL 590 (725)
Q Consensus 582 L~~L~i~~~ 590 (725)
.+.|++..+
T Consensus 262 FKyL~~qA~ 270 (722)
T KOG0532|consen 262 FKYLSTQAC 270 (722)
T ss_pred eeeecchhc
Confidence 555666555
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-08 Score=102.30 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=106.7
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
+++|.+++........+.. +....|++++.|+++.|-+..+.. +-.....+++|+.|+|+ .|. +....++
T Consensus 121 kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls------~Nr-l~~~~~s 190 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLS------SNR-LSNFISS 190 (505)
T ss_pred HhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccc------ccc-ccCCccc
Confidence 5777788877776643322 233489999999999987654433 45557889999999999 777 4332222
Q ss_pred --cccCccccEEEeecCCCcc--ccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCC--cccC
Q 036753 477 --IEKLLHLKYLNLKGQKKIE--NLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP--AGIG 550 (725)
Q Consensus 477 --i~~l~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~ 550 (725)
-..+.||+.|.|+.|. +. .+..-.-.+++|+.|+|.+|..+..--..-..+..|+.|+|++|.. ...+ ..++
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccc
Confidence 2467899999999998 55 2333455788999999998853332222234466789999998844 4445 3467
Q ss_pred CCccCcccCeEEEcCc
Q 036753 551 ELIRLRRVREFVVGGG 566 (725)
Q Consensus 551 ~l~~L~~L~~~~~~~~ 566 (725)
.++.|..|.+..++..
T Consensus 269 ~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIA 284 (505)
T ss_pred cccchhhhhccccCcc
Confidence 7777777776655443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=2.7e-08 Score=95.89 Aligned_cols=237 Identities=16% Similarity=0.073 Sum_probs=133.2
Q ss_pred hhHHhhcCCcceEEEeccccCCC-cccccc-ccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccc
Q 036753 443 LPQLFEKLTCLRALELQVRESWP-RNSLIK-EIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRE 520 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~-~~~~~~-~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~ 520 (725)
+...+..+..|.+|..++.+.=. ..+++. .+|-.+.-+.+|+.+.++.|. ...+-.-...-+-|+++.+++.. +..
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~ 251 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQD 251 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-ccc
Confidence 33444555566666665322100 111111 234445556677777777775 33333222233567777776654 333
Q ss_pred ccccccCCCcCcEEecCCCcc-cccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhh
Q 036753 521 LPRGIGKLRKLMYLHNEDTGC-LRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEA 599 (725)
Q Consensus 521 lp~~i~~L~~L~~L~l~~~~~-~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~ 599 (725)
.|. +--..++..+.-+.-.. -+.+-..+.....|.+|+++.+.... .-..++-++.++.|.++..+..
T Consensus 252 ~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~----iDESvKL~Pkir~L~lS~N~i~------ 320 (490)
T KOG1259|consen 252 VPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ----IDESVKLAPKLRRLILSQNRIR------ 320 (490)
T ss_pred ccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh----hhhhhhhccceeEEecccccee------
Confidence 331 11122222221111100 01111223334567777777665443 2223444566777766653221
Q ss_pred hhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccce
Q 036753 600 ARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRD 679 (725)
Q Consensus 600 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~ 679 (725)
...++..+.+|+.|+|++|.++.+ -..-..+-|+++|.|++|.+.. .+.++.|-+|..
T Consensus 321 ~v~nLa~L~~L~~LDLS~N~Ls~~------------------~Gwh~KLGNIKtL~La~N~iE~----LSGL~KLYSLvn 378 (490)
T KOG1259|consen 321 TVQNLAELPQLQLLDLSGNLLAEC------------------VGWHLKLGNIKTLKLAQNKIET----LSGLRKLYSLVN 378 (490)
T ss_pred eehhhhhcccceEeecccchhHhh------------------hhhHhhhcCEeeeehhhhhHhh----hhhhHhhhhhee
Confidence 123467788999999999874221 1122346789999999998766 456778889999
Q ss_pred eEEcCCC--CCCcCCCCCCccccceeecccccCceEeC
Q 036753 680 LSLFWWS--NCEHLPPLGKLKSLESLLIYGMQSVKRVG 715 (725)
Q Consensus 680 L~L~~c~--~~~~lp~l~~lp~L~~L~L~~~~~l~~i~ 715 (725)
|++++|. .+..+..+|.||+|+.|.|.++| +..++
T Consensus 379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred ccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 9999995 34455569999999999999998 65554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.1e-08 Score=103.78 Aligned_cols=210 Identities=20% Similarity=0.115 Sum_probs=122.1
Q ss_pred hcCCcceEEEeccccCCCcccccccccc--ccccCccccEEEeecCCCccc---cchhhhcCCCCcEeecCCCccccccc
Q 036753 448 EKLTCLRALELQVRESWPRNSLIKEIPT--NIEKLLHLKYLNLKGQKKIEN---LPETLCELYNLECLNVDDCQNLRELP 522 (725)
Q Consensus 448 ~~l~~Lr~L~L~~~~~~~~~~~~~~lp~--~i~~l~~Lr~L~L~~~~~i~~---lp~~i~~L~~L~~L~l~~~~~l~~lp 522 (725)
++++.||...|. .+. +...+. ....+++++.|||++|- +.. +-.-...|++|+.|+|+.|. +...-
T Consensus 118 sn~kkL~~IsLd------n~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLD------NYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNR-LSNFI 188 (505)
T ss_pred hhHHhhhheeec------Ccc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccccccc-ccCCc
Confidence 677888888887 665 655552 56778899999999886 332 22345678899999999887 33222
Q ss_pred cc--ccCCCcCcEEecCCCcccc-cCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhh
Q 036753 523 RG--IGKLRKLMYLHNEDTGCLR-YLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEA 599 (725)
Q Consensus 523 ~~--i~~L~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~ 599 (725)
.+ -..++.|+.|.++.|.... .+-.....+++|+.|++..+.... .....-.-+..|+.|++....... .+
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~~~~~i~~~L~~LdLs~N~li~---~~ 262 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---IKATSTKILQTLQELDLSNNNLID---FD 262 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---eecchhhhhhHHhhccccCCcccc---cc
Confidence 11 2356778888888884321 122224456788888887764221 112222334455556665432221 22
Q ss_pred hhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccc--cccCcccc
Q 036753 600 ARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKN--WFMSLTNL 677 (725)
Q Consensus 600 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~--~l~~l~~L 677 (725)
.......++.|+.|.++.+++.+... .+.+..+....+++|++|++..|++.. . ++ -+..+++|
T Consensus 263 ~~~~~~~l~~L~~Lnls~tgi~si~~-----------~d~~s~~kt~~f~kL~~L~i~~N~I~~--w-~sl~~l~~l~nl 328 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTGIASIAE-----------PDVESLDKTHTFPKLEYLNISENNIRD--W-RSLNHLRTLENL 328 (505)
T ss_pred cccccccccchhhhhccccCcchhcC-----------CCccchhhhcccccceeeecccCcccc--c-cccchhhccchh
Confidence 22445567777777777776533322 112223334556778888887777644 3 21 12245666
Q ss_pred ceeEEcCCC
Q 036753 678 RDLSLFWWS 686 (725)
Q Consensus 678 ~~L~L~~c~ 686 (725)
+.|.+..+.
T Consensus 329 k~l~~~~n~ 337 (505)
T KOG3207|consen 329 KHLRITLNY 337 (505)
T ss_pred hhhhccccc
Confidence 666655443
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=2.4e-08 Score=98.73 Aligned_cols=248 Identities=17% Similarity=0.143 Sum_probs=140.6
Q ss_pred CCcccccEEEeccCCcccc-ccchhHHhhcCCcceEEEeccccCCCccccccccccc-------cccCccccEEEeecCC
Q 036753 421 TGLRGLRSLLVKSDEYSWS-SEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN-------IEKLLHLKYLNLKGQK 492 (725)
Q Consensus 421 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~-------i~~l~~Lr~L~L~~~~ 492 (725)
..+..+..+.+++|.+..- ...+...+.+.+.||..+++. ++.+-. ...+|+. +-..++|++|+||+|-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd--~ftGR~-~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD--MFTGRL-KDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh--hhcCCc-HHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3677888899999886321 123555677888899888871 111111 3334443 3345689999999887
Q ss_pred Cccc----cchhhhcCCCCcEeecCCCcccccc--------------cccccCCCcCcEEecCCCcccccCC-----ccc
Q 036753 493 KIEN----LPETLCELYNLECLNVDDCQNLREL--------------PRGIGKLRKLMYLHNEDTGCLRYLP-----AGI 549 (725)
Q Consensus 493 ~i~~----lp~~i~~L~~L~~L~l~~~~~l~~l--------------p~~i~~L~~L~~L~l~~~~~~~~lp-----~~i 549 (725)
.-.. +-.-+..++.|++|.|.+|. +... -..+..-++||.+...+|. +..-+ ..+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~ 181 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAF 181 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHH
Confidence 3222 23446678889999998887 4321 1123445677888777662 23222 224
Q ss_pred CCCccCcccCeEEEcCcCCCc-cCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccc
Q 036753 550 GELIRLRRVREFVVGGGYDRA-CSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQA 628 (725)
Q Consensus 550 ~~l~~L~~L~~~~~~~~~~~~-~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~ 628 (725)
...+.|+++.+..+....... .....+..+++|+.|++...........++...++.+++|+.|+++.|.+++.+.
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga--- 258 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA--- 258 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH---
Confidence 444556655555444332001 1223456677777777765333222334445556667777777777776544432
Q ss_pred cCCCCCchhHHHHhhhcC-CCCCCCcEEEeeecCCCCC---cccccccCccccceeEEcCCCC
Q 036753 629 GRRENEEDEDERLLEALG-PPPNLKNLGIDEYRGRRNV---VPKNWFMSLTNLRDLSLFWWSN 687 (725)
Q Consensus 629 ~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~~---~~p~~l~~l~~L~~L~L~~c~~ 687 (725)
..+.+.+. ..|+|+.|.+.+|.+..+. + -..+...|.|..|.|++|..
T Consensus 259 ----------~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l-a~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 ----------IAFVDALKESAPSLEVLELAGNEITRDAALAL-AACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ----------HHHHHHHhccCCCCceeccCcchhHHHHHHHH-HHHHhcchhhHHhcCCcccc
Confidence 33344432 3577777777777655411 1 11223567777777777743
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=6.2e-08 Score=104.84 Aligned_cols=177 Identities=25% Similarity=0.327 Sum_probs=138.0
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCC-cceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLT-CLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPET 500 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~ 500 (725)
..+.+..|.+.++.+.. ++.....+. +|+.|+++ ++. +..+|..++.+++|+.|++++|. +..+|..
T Consensus 114 ~~~~l~~L~l~~n~i~~----i~~~~~~~~~nL~~L~l~------~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 114 ELTNLTSLDLDNNNITD----IPPLIGLLKSNLKELDLS------DNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred cccceeEEecCCccccc----Cccccccchhhccccccc------ccc-hhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 56788999999988654 444455554 89999999 888 88898889999999999999999 9999998
Q ss_pred hhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCC
Q 036753 501 LCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLN 580 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 580 (725)
.+.+.+|+.|++++|. +..+|..+..+..|..|.+++|. ....+..+.++.++..|.+..+.... +
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~--------~---- 247 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED--------L---- 247 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee--------c----
Confidence 8899999999999998 99999888778889999999884 34556667777776666533222111 0
Q ss_pred CCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeec
Q 036753 581 FLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYR 660 (725)
Q Consensus 581 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 660 (725)
...+..+.+|+.|+++.|.++.. ..+.+..+|+.|+++++.
T Consensus 248 --------------------~~~~~~l~~l~~L~~s~n~i~~i-------------------~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 248 --------------------PESIGNLSNLETLDLSNNQISSI-------------------SSLGSLTNLRELDLSGNS 288 (394)
T ss_pred --------------------cchhccccccceecccccccccc-------------------ccccccCccCEEeccCcc
Confidence 13355677899999999874221 226778999999999998
Q ss_pred CCC
Q 036753 661 GRR 663 (725)
Q Consensus 661 ~~~ 663 (725)
...
T Consensus 289 ~~~ 291 (394)
T COG4886 289 LSN 291 (394)
T ss_pred ccc
Confidence 876
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=5.5e-07 Score=102.21 Aligned_cols=102 Identities=26% Similarity=0.403 Sum_probs=73.2
Q ss_pred cceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcC
Q 036753 452 CLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKL 531 (725)
Q Consensus 452 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 531 (725)
.++.|+|+ ++.+...+|..++++.+|++|+|++|.....+|..++++++|++|+|++|.....+|..+++|++|
T Consensus 419 ~v~~L~L~------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLD------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECC------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 36677777 676445677778888888888888887444777778888888888888887556778778888888
Q ss_pred cEEecCCCcccccCCcccCCC-ccCcccC
Q 036753 532 MYLHNEDTGCLRYLPAGIGEL-IRLRRVR 559 (725)
Q Consensus 532 ~~L~l~~~~~~~~lp~~i~~l-~~L~~L~ 559 (725)
++|++++|.....+|..++.+ .++..+.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEE
Confidence 888888876666777766543 2344443
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=4.8e-07 Score=102.73 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=56.7
Q ss_pred ccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCC
Q 036753 426 LRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELY 505 (725)
Q Consensus 426 L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~ 505 (725)
++.|.+.++.+.. .+|..+..+++|+.|+|+ +|.+...+|..++.+.+|++|+|++|.....+|..+++|+
T Consensus 420 v~~L~L~~n~L~g---~ip~~i~~L~~L~~L~Ls------~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRG---FIPNDISKLRHLQSINLS------GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCCccc---cCCHHHhCCCCCCEEECC------CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 4455555554322 245555566666666665 5553345555566666666666666653335555566666
Q ss_pred CCcEeecCCCcccccccccccCC-CcCcEEecCCC
Q 036753 506 NLECLNVDDCQNLRELPRGIGKL-RKLMYLHNEDT 539 (725)
Q Consensus 506 ~L~~L~l~~~~~l~~lp~~i~~L-~~L~~L~l~~~ 539 (725)
+|++|+|++|.....+|..++.+ .++..+++.+|
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 66666666655444555555432 24445555555
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.6e-08 Score=97.53 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=50.4
Q ss_pred ccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCccccccc---CccccceeE
Q 036753 605 EKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFM---SLTNLRDLS 681 (725)
Q Consensus 605 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~---~l~~L~~L~ 681 (725)
.++++|..|+|+.+.. ...+....+..++.|++|.++.|.... |..+- +.|.|.+|+
T Consensus 310 ~rcp~l~~LDLSD~v~----------------l~~~~~~~~~kf~~L~~lSlsRCY~i~----p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVM----------------LKNDCFQEFFKFNYLQHLSLSRCYDII----PETLLELNSKPSLVYLD 369 (419)
T ss_pred HhCCceeeeccccccc----------------cCchHHHHHHhcchheeeehhhhcCCC----hHHeeeeccCcceEEEE
Confidence 4678888888887651 122455666778888899888887644 55443 678888888
Q ss_pred EcCCCCCCcCCC-CCCccccc
Q 036753 682 LFWWSNCEHLPP-LGKLKSLE 701 (725)
Q Consensus 682 L~~c~~~~~lp~-l~~lp~L~ 701 (725)
+.+|-..+.+.. ...+|+|+
T Consensus 370 v~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 370 VFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred eccccCchHHHHHHHhCcccc
Confidence 888854433332 23345444
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4e-08 Score=94.77 Aligned_cols=185 Identities=21% Similarity=0.139 Sum_probs=115.2
Q ss_pred cccEEEeecCCCcc--ccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccC
Q 036753 482 HLKYLNLKGQKKIE--NLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVR 559 (725)
Q Consensus 482 ~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 559 (725)
.|++|||+... ++ .+-.-+..+.+|+.|.+.|+..-..+-..|.+-.+|+.|+++.|+.+......
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~----------- 253 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ----------- 253 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH-----------
Confidence 48899998876 44 34445677888888888887733445556777788888888888544332111
Q ss_pred eEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHH
Q 036753 560 EFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDE 639 (725)
Q Consensus 560 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 639 (725)
--+.+++.|..|++++|......-.+..+.++ ++|+.|+|+++.- .- ...
T Consensus 254 --------------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rr------------nl--~~s 303 (419)
T KOG2120|consen 254 --------------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRR------------NL--QKS 303 (419)
T ss_pred --------------HHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHh------------hh--hhh
Confidence 01233444444445554433322222333333 4788889988750 00 011
Q ss_pred HHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCC--cCCCCCCccccceeeccccc
Q 036753 640 RLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCE--HLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 640 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~--~lp~l~~lp~L~~L~L~~~~ 709 (725)
.+-.-...+|+|..|+|+.|....+.. -..+..|+.|++|.++.|..+. .+-.+...|+|.+|++.+|-
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 122233568999999999998766211 2223378999999999996442 22237889999999999874
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.26 E-value=3.7e-07 Score=90.41 Aligned_cols=247 Identities=19% Similarity=0.110 Sum_probs=152.2
Q ss_pred hHHhhcCCcceEEEeccccCCCcccccc----ccccccccCccccEEEeecCC---Cccccchh-------hhcCCCCcE
Q 036753 444 PQLFEKLTCLRALELQVRESWPRNSLIK----EIPTNIEKLLHLKYLNLKGQK---KIENLPET-------LCELYNLEC 509 (725)
Q Consensus 444 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~~----~lp~~i~~l~~Lr~L~L~~~~---~i~~lp~~-------i~~L~~L~~ 509 (725)
-+....+..+..++|+ +|.+-. .+-..+.+.+.|+.-++++-. ...++|+. +-+.++|++
T Consensus 23 ~~~~~~~~s~~~l~ls------gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLS------GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred HHHhcccCceEEEecc------CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 3346778899999999 777321 244556777889999988642 12345543 456779999
Q ss_pred eecCCCccccccccc----ccCCCcCcEEecCCCccccc-------------CCcccCCCccCcccCeEEEcCcCCCcc-
Q 036753 510 LNVDDCQNLRELPRG----IGKLRKLMYLHNEDTGCLRY-------------LPAGIGELIRLRRVREFVVGGGYDRAC- 571 (725)
Q Consensus 510 L~l~~~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~-------------lp~~i~~l~~L~~L~~~~~~~~~~~~~- 571 (725)
||||+|-.-...++. |.+...|+||.|.+|..-.. ....+++-+.|+++....+........
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH
Confidence 999999743343433 56788999999998843110 111233334555555444433321111
Q ss_pred CccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCC
Q 036753 572 SLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNL 651 (725)
Q Consensus 572 ~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 651 (725)
....++..+.|..+.+...+..+....++...+..+++|+.|+|..|.++-.. ...+-..+..+++|
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-------------s~~LakaL~s~~~L 243 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-------------SVALAKALSSWPHL 243 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-------------HHHHHHHhcccchh
Confidence 12334556667777776655544444566677888888888888888743221 12234556667888
Q ss_pred CcEEEeeecCCCCCcc--cccc-cCccccceeEEcCCCCCCc----CC-CCCCccccceeeccccc
Q 036753 652 KNLGIDEYRGRRNVVP--KNWF-MSLTNLRDLSLFWWSNCEH----LP-PLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 652 ~~L~L~~~~~~~~~~~--p~~l-~~l~~L~~L~L~~c~~~~~----lp-~l~~lp~L~~L~L~~~~ 709 (725)
+.|.++.|......-. -..+ ...|+|+.|.+.+|..-.. +. .+...|.|..|+|.+|.
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8888888876551100 0111 1578888888888852211 11 15568899999998887
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=2.3e-07 Score=89.57 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=80.9
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
....|..+++++|.++. +.+++.-.+.+|+|+++ .|. +..+ .++..|++|..|||++|. +.++-..-
T Consensus 282 TWq~LtelDLS~N~I~~----iDESvKL~Pkir~L~lS------~N~-i~~v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ----IDESVKLAPKLRRLILS------QNR-IRTV-QNLAELPQLQLLDLSGNL-LAECVGWH 348 (490)
T ss_pred hHhhhhhccccccchhh----hhhhhhhccceeEEecc------ccc-eeee-hhhhhcccceEeecccch-hHhhhhhH
Confidence 45567777777776543 33445666777777777 666 4443 336666777777777776 66555544
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCC--cccCCCccCcccCeEEEcCc
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP--AGIGELIRLRRVREFVVGGG 566 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~~~~~~~~ 566 (725)
.+|-|.++|.|.+|. ++.+. ++++|-+|..|++.+|+ +..+- .+||+|+.|+++.+.++...
T Consensus 349 ~KLGNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 566677777777765 55553 56677777777777763 33332 45777777777776655443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1e-06 Score=66.83 Aligned_cols=58 Identities=29% Similarity=0.455 Sum_probs=51.9
Q ss_pred CCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeeccccc
Q 036753 649 PNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 649 ~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~ 709 (725)
|+|++|++++|.+.. +++.++..+++|++|+|++| .+..+|+ +..+|+|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 589999999999888 86789999999999999988 5677776 8999999999999986
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.14 E-value=7.7e-08 Score=97.25 Aligned_cols=265 Identities=20% Similarity=0.116 Sum_probs=146.8
Q ss_pred CCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cc-ccccCccccEEEeecCCCccc--
Q 036753 421 TGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PT-NIEKLLHLKYLNLKGQKKIEN-- 496 (725)
Q Consensus 421 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~-~i~~l~~Lr~L~L~~~~~i~~-- 496 (725)
.+++++..|.+.++..... ..+-..-..+++|++|+|. .|..+... .+ -...+++|+||++++|..+..
T Consensus 161 ~~CpnIehL~l~gc~~iTd-~s~~sla~~C~~l~~l~L~------~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITD-SSLLSLARYCRKLRHLNLH------SCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhCCchhhhhhhcceeccH-HHHHHHHHhcchhhhhhhc------ccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 3677888887777763221 1133334678888898888 43323321 11 234578889999988875554
Q ss_pred cchhhhcCCCCcEeecCCCccccc--ccccccCCCcCcEEecCCCcccccCC--cccCCCccCcccCeEEEcCcCCCccC
Q 036753 497 LPETLCELYNLECLNVDDCQNLRE--LPRGIGKLRKLMYLHNEDTGCLRYLP--AGIGELIRLRRVREFVVGGGYDRACS 572 (725)
Q Consensus 497 lp~~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~~~~~~~~~~~~~~ 572 (725)
+-.-..++.+|+.+.++||..+.. +-..-....-+..+++..|..++... ..-..+..||.|...++.... ...
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~--d~~ 311 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT--DEV 311 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc--hHH
Confidence 223345666777787777753221 11111223334555555664443321 011235677777777666543 334
Q ss_pred ccccc-cCCCCCceEEeCcCCCCChhhhhhhcc-ccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCC
Q 036753 573 LGSLK-KLNFLQQCGIRGLGGVSDAGEAARAEL-EKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPN 650 (725)
Q Consensus 573 ~~~L~-~L~~L~~L~i~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 650 (725)
+..|+ +..+|+.+.+..+..+.+.. ...+ .++++|+.+++..+.. . .+..+...-..++.
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~---ft~l~rn~~~Le~l~~e~~~~----~-----------~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRG---FTMLGRNCPHLERLDLEECGL----I-----------TDGTLASLSRNCPR 373 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhh---hhhhhcCChhhhhhcccccce----e-----------hhhhHhhhccCCch
Confidence 44443 34667777777666543321 1222 3567777777776651 0 11223333445777
Q ss_pred CCcEEEeeecCCCCC----cccccccCccccceeEEcCCCCCCc--CCCCCCccccceeecccccCceE
Q 036753 651 LKNLGIDEYRGRRNV----VPKNWFMSLTNLRDLSLFWWSNCEH--LPPLGKLKSLESLLIYGMQSVKR 713 (725)
Q Consensus 651 L~~L~L~~~~~~~~~----~~p~~l~~l~~L~~L~L~~c~~~~~--lp~l~~lp~L~~L~L~~~~~l~~ 713 (725)
|++|.|+.|...++. + ...-.++..|+.|.|.+|+.+.+ +..+...++|+.+++.+|..+.+
T Consensus 374 lr~lslshce~itD~gi~~l-~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHL-SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hccCChhhhhhhhhhhhhhh-hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 888888777654411 0 11112566778888888875542 33466777788877777766544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=3.1e-06 Score=64.19 Aligned_cols=56 Identities=29% Similarity=0.554 Sum_probs=28.6
Q ss_pred cccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCC
Q 036753 482 HLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDT 539 (725)
Q Consensus 482 ~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 539 (725)
+|++|++++|. +..+|. .+.++++|++|++++|. +..+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555554 555542 44555555555555554 344433 3455555555555554
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=6.1e-06 Score=86.01 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=28.0
Q ss_pred cCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccc
Q 036753 449 KLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELP 522 (725)
Q Consensus 449 ~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 522 (725)
.+++++.|+++ +|. +..+|. -..+|+.|.+++|..++.+|..+. .+|+.|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is------~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIK------DCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeC------CCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 34555555555 443 444441 112355555555444444444332 344555555543344444
No 46
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=3.7e-06 Score=86.62 Aligned_cols=53 Identities=21% Similarity=0.086 Sum_probs=45.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCc--cHHHHHHHHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPF--DEFRIARAVI 257 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~ 257 (725)
.=.-.+|+|.+|+||||||++||++.... +|+.++||.+++.+ ++.++++.|.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 34567899999999999999999964443 99999999999998 8888888876
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=6.1e-07 Score=97.28 Aligned_cols=237 Identities=25% Similarity=0.205 Sum_probs=150.4
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+..+..+.+..+.+.. .-..+..++.|..|++. ++. +..+...+..+.+|++|++++|. |+.+.. +
T Consensus 70 ~l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~------~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLY------DNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLEG-L 136 (414)
T ss_pred HhHhHHhhccchhhhhh----hhcccccccceeeeecc------ccc-hhhcccchhhhhcchheeccccc-cccccc-h
Confidence 45556666666665432 12226778899999998 787 77775557889999999999998 888865 8
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcc-cCCCccCcccCeEEEcCcCCCccCccccccCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLRRVREFVVGGGYDRACSLGSLKKLN 580 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 580 (725)
..+..|+.|++.+|. +..++ ++..+++|+.+++++|.. ..+... ...+.+|+.+.+..+.... ...+..+..+.
T Consensus 137 ~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~ 211 (414)
T KOG0531|consen 137 STLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLV 211 (414)
T ss_pred hhccchhhheeccCc-chhcc-CCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHH
Confidence 888889999999998 66665 566688999999998843 334332 4677788888776665443 22222222222
Q ss_pred CC--CceEEeCcCCCCChhhhhhhcccccc--ccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEE
Q 036753 581 FL--QQCGIRGLGGVSDAGEAARAELEKKK--YLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGI 656 (725)
Q Consensus 581 ~L--~~L~i~~~~~~~~~~~~~~~~l~~~~--~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 656 (725)
.+ ..-.+..+. .+.... +|+.++++.+++ ....+.+..+.++..|++
T Consensus 212 ~~~l~~n~i~~~~-----------~l~~~~~~~L~~l~l~~n~i------------------~~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 212 LLSLLDNKISKLE-----------GLNELVMLHLRELYLSGNRI------------------SRSPEGLENLKNLPVLDL 262 (414)
T ss_pred Hhhcccccceecc-----------CcccchhHHHHHHhcccCcc------------------ccccccccccccccccch
Confidence 22 111111111 111222 378888888872 111145667788888888
Q ss_pred eeecCCCCCcccccccCccccceeEEcCCCCCC---cC--CCCCCccccceeeccccc
Q 036753 657 DEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCE---HL--PPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 657 ~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~---~l--p~l~~lp~L~~L~L~~~~ 709 (725)
..+.+.. + .-+..++.+..+....+.... .. +..+..+.+..+.+..++
T Consensus 263 ~~n~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 263 SSNRISN--L--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred hhccccc--c--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 8887665 2 234456666666666665221 11 225667788888887766
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=1.1e-06 Score=95.35 Aligned_cols=222 Identities=23% Similarity=0.243 Sum_probs=131.6
Q ss_pred CCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchh
Q 036753 421 TGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPET 500 (725)
Q Consensus 421 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~ 500 (725)
..+++|..|.+.+|.+..+ ...+..+.+|++|+++ +|. +..+ ..+..+..|+.|++++|. +..++.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i----~~~l~~~~~L~~L~ls------~N~-I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~- 157 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKI----ENLLSSLVNLQVLDLS------FNK-ITKL-EGLSTLTLLKELNLSGNL-ISDISG- 157 (414)
T ss_pred ccccceeeeeccccchhhc----ccchhhhhcchheecc------ccc-cccc-cchhhccchhhheeccCc-chhccC-
Confidence 3788899999999886433 2226778999999998 888 7777 447788889999999998 777765
Q ss_pred hhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccC
Q 036753 501 LCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKL 579 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L 579 (725)
+..+.+|+.+++++|. +..++.. +..+.+|+.+.+.+|.. .. ..++..+..+..+.+..+... .+..+..+
T Consensus 158 ~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i-~~-i~~~~~~~~l~~~~l~~n~i~-----~~~~l~~~ 229 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSI-RE-IEGLDLLKKLVLLSLLDNKIS-----KLEGLNEL 229 (414)
T ss_pred CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCch-hc-ccchHHHHHHHHhhcccccce-----eccCcccc
Confidence 6668999999999998 6555543 57888899999988832 21 122333333333332222211 12222222
Q ss_pred CC--CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEe
Q 036753 580 NF--LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGID 657 (725)
Q Consensus 580 ~~--L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 657 (725)
.. |+.+.+....... ....+..+.++..|++..+.+... ..+...+.+..+...
T Consensus 230 ~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n~~~~~-------------------~~~~~~~~~~~~~~~ 285 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSNRISNL-------------------EGLERLPKLSELWLN 285 (414)
T ss_pred hhHHHHHHhcccCcccc-----ccccccccccccccchhhcccccc-------------------ccccccchHHHhccC
Confidence 22 5555554422111 013455677888888877763211 122223444444444
Q ss_pred eecCCCC--Ccccc-cccCccccceeEEcCCCCCC
Q 036753 658 EYRGRRN--VVPKN-WFMSLTNLRDLSLFWWSNCE 689 (725)
Q Consensus 658 ~~~~~~~--~~~p~-~l~~l~~L~~L~L~~c~~~~ 689 (725)
.+..... .. .. -....++++.+.+..++.-.
T Consensus 286 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 286 DNKLALSEAIS-QEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cchhcchhhhh-ccccccccccccccccccCcccc
Confidence 4443310 01 11 13356788888888775333
No 49
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.01 E-value=6.5e-06 Score=81.44 Aligned_cols=54 Identities=22% Similarity=0.060 Sum_probs=46.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCC--ccHHHHHHHHHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEP--FDEFRIARAVIE 258 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i~~ 258 (725)
.-..++|+|.+|+|||||++.+|++.... +|+..+|+++++. +++.++++.|..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~ 70 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKG 70 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhcc
Confidence 45688999999999999999999975443 8999999998877 899999999833
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.2e-05 Score=55.91 Aligned_cols=39 Identities=33% Similarity=0.593 Sum_probs=25.0
Q ss_pred cccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccc
Q 036753 482 HLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELP 522 (725)
Q Consensus 482 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 522 (725)
+|++|++++|. ++.+|+.+++|++|++|++++|. +..+|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 56777777776 66777667777777777777775 44443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=6.1e-06 Score=93.46 Aligned_cols=158 Identities=21% Similarity=0.143 Sum_probs=106.0
Q ss_pred ccccEEEeecCCCcc-ccchhhh-cCCCCcEeecCCCccc-ccccccccCCCcCcEEecCCCcccccCCcccCCCccCcc
Q 036753 481 LHLKYLNLKGQKKIE-NLPETLC-ELYNLECLNVDDCQNL-RELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 557 (725)
Q Consensus 481 ~~Lr~L~L~~~~~i~-~lp~~i~-~L~~L~~L~l~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 557 (725)
.+|++|+++|...+. .-|..++ .|++|+.|.+++-... ..+-.-..++++|+.||++++ .+..+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 468888888865433 2344444 4888999988874421 122233467889999999988 44444 78999999999
Q ss_pred cCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCCh--hhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCc
Q 036753 558 VREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDA--GEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEE 635 (725)
Q Consensus 558 L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 635 (725)
|.+.+..... ...+.+|-+|++|+.|+|+.-...... .......-..+++|+.|+.+++.+
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi--------------- 262 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI--------------- 262 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch---------------
Confidence 9988877665 567788889999999999875543332 122233344588999999998762
Q ss_pred hhHHHHhh-hcCCCCCCCcEEEeee
Q 036753 636 DEDERLLE-ALGPPPNLKNLGIDEY 659 (725)
Q Consensus 636 ~~~~~~~~-~l~~~~~L~~L~L~~~ 659 (725)
.+.+++ .+..+|+|+...+-++
T Consensus 263 --~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 263 --NEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred --hHHHHHHHHHhCccHhhhhhhhh
Confidence 233333 3345677777765543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=1.2e-05 Score=77.97 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=44.6
Q ss_pred ccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCc-ccccccCccccceeEEcCC
Q 036753 607 KKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVV-PKNWFMSLTNLRDLSLFWW 685 (725)
Q Consensus 607 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~-~p~~l~~l~~L~~L~L~~c 685 (725)
++++..+.++.|.+.+. .--....++|.+--|+|+.+.+.. . ....+..|+.|..|.+.++
T Consensus 198 Fpnv~sv~v~e~PlK~~----------------s~ek~se~~p~~~~LnL~~~~ids--wasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTE----------------SSEKGSEPFPSLSCLNLGANNIDS--WASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred cccchheeeecCcccch----------------hhcccCCCCCcchhhhhccccccc--HHHHHHHcCCchhheeeccCC
Confidence 45666677766653221 122344556666666666555422 1 0112236777777777777
Q ss_pred CCCCcCCC-------CCCccccceeecc
Q 036753 686 SNCEHLPP-------LGKLKSLESLLIY 706 (725)
Q Consensus 686 ~~~~~lp~-------l~~lp~L~~L~L~ 706 (725)
+.+..+.. ++.||+++.|+=+
T Consensus 260 Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 260 PLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccccccCCcceEEEEeeccceEEecCc
Confidence 65554431 5667777776544
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=6.3e-05 Score=52.23 Aligned_cols=41 Identities=29% Similarity=0.550 Sum_probs=33.3
Q ss_pred CcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccch
Q 036753 451 TCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPE 499 (725)
Q Consensus 451 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~ 499 (725)
++|++|+++ +|. +..+|..+++|++|++|++++|. ++.+|.
T Consensus 1 ~~L~~L~l~------~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS------NNQ-ITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEET------SSS--SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEcc------CCC-CcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 478999998 888 88888889999999999999998 777664
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.61 E-value=4.7e-06 Score=84.60 Aligned_cols=257 Identities=16% Similarity=0.057 Sum_probs=149.1
Q ss_pred ccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccc-ccccc-ccCccccEEEeecCCCcccc--chhh
Q 036753 426 LRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKE-IPTNI-EKLLHLKYLNLKGQKKIENL--PETL 501 (725)
Q Consensus 426 L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~-lp~~i-~~l~~Lr~L~L~~~~~i~~l--p~~i 501 (725)
|+.|.+.++.-... ..+.....+++++..|++. +|..+.. .-.++ ..+++|++|++..|..++.. -.-.
T Consensus 140 lk~LSlrG~r~v~~-sslrt~~~~CpnIehL~l~------gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 140 LKELSLRGCRAVGD-SSLRTFASNCPNIEHLALY------GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccCCc-chhhHHhhhCCchhhhhhh------cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 44555555442222 1245556889999999998 6654433 11222 45788999999998766643 2345
Q ss_pred hcCCCCcEeecCCCccccc--ccccccCCCcCcEEecCCCcccccCCcc-c----CCCccCcccCeEEEcCcCCCccCcc
Q 036753 502 CELYNLECLNVDDCQNLRE--LPRGIGKLRKLMYLHNEDTGCLRYLPAG-I----GELIRLRRVREFVVGGGYDRACSLG 574 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i----~~l~~L~~L~~~~~~~~~~~~~~~~ 574 (725)
..+++|++|+++.|..+.. +-.-....++|+.+.+.+|.. .+.. + +....+-++++..|.... ....+.
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lT-D~~~~~ 288 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLT-DEDLWL 288 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhcccc-chHHHH
Confidence 6789999999999985554 111234455677777777733 2211 1 122233344443443322 111222
Q ss_pred ccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhc-CCCCCCCc
Q 036753 575 SLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEAL-GPPPNLKN 653 (725)
Q Consensus 575 ~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~ 653 (725)
.-..+..|+.+...++.++.+ ..+.+--.+..+|+.|.+..+. . ....-+..+ .+++.|+.
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~----~------------fsd~~ft~l~rn~~~Le~ 350 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQ----Q------------FSDRGFTMLGRNCPHLER 350 (483)
T ss_pred HhhhhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccc----h------------hhhhhhhhhhcCChhhhh
Confidence 233456777777777665443 2223333466889999998876 1 111222233 46788999
Q ss_pred EEEeeecCCCCC-cccccccCccccceeEEcCCCCCCcC-----CC-CCCccccceeecccccCce
Q 036753 654 LGIDEYRGRRNV-VPKNWFMSLTNLRDLSLFWWSNCEHL-----PP-LGKLKSLESLLIYGMQSVK 712 (725)
Q Consensus 654 L~L~~~~~~~~~-~~p~~l~~l~~L~~L~L~~c~~~~~l-----p~-l~~lp~L~~L~L~~~~~l~ 712 (725)
|++.++....+. + -.--.+.+.|+.|.|+.|..+++. .. -..+..|..|.|.+||.+.
T Consensus 351 l~~e~~~~~~d~tL-~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 351 LDLEECGLITDGTL-ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hcccccceehhhhH-hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 999888654411 1 111126789999999999766554 11 2346678888888877543
No 55
>PRK08118 topology modulation protein; Reviewed
Probab=97.60 E-value=3.3e-05 Score=72.01 Aligned_cols=52 Identities=27% Similarity=0.505 Sum_probs=36.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhh-cccccee----eeecCCCccHHHHHHHHHH
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNNDDVK-KHFDERI----WVCVSEPFDEFRIARAVIE 258 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~----wv~vs~~~~~~~l~~~i~~ 258 (725)
+.|.|+|.+|+||||||+.+++...+. -+||... |+.+++. +...++++++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~~ 58 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELVK 58 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHhc
Confidence 358899999999999999999864444 5677777 5555543 44444554443
No 56
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.59 E-value=0.00016 Score=77.39 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=59.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcccc------ceeeeecCCCccHH
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFD------ERIWVCVSEPFDEF 250 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~------~~~wv~vs~~~~~~ 250 (725)
++.++||++++++|...|..... +.....+-|+|.+|+||||+++.++++ +....+ ..+|+......+..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHH
Confidence 34799999999999999875221 123456889999999999999999984 322211 23556555555677
Q ss_pred HHHHHHHHHhc
Q 036753 251 RIARAVIEALK 261 (725)
Q Consensus 251 ~l~~~i~~~l~ 261 (725)
.++..|++++.
T Consensus 90 ~~~~~i~~~l~ 100 (365)
T TIGR02928 90 QVLVELANQLR 100 (365)
T ss_pred HHHHHHHHHHh
Confidence 88999998885
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.57 E-value=0.00019 Score=77.56 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=60.1
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcccc--ceeeeecCCCccHHHHH
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFD--ERIWVCVSEPFDEFRIA 253 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~l~ 253 (725)
.++.++||+++.++|...|...-. +.....+-|+|..|+||||+++.|+++ .+.... ..+++......+...++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHH
Confidence 456799999999999999854321 123445679999999999999999985 333322 23445445555778889
Q ss_pred HHHHHHhcC
Q 036753 254 RAVIEALKS 262 (725)
Q Consensus 254 ~~i~~~l~~ 262 (725)
.+|+.++.+
T Consensus 104 ~~i~~~l~~ 112 (394)
T PRK00411 104 SEIARQLFG 112 (394)
T ss_pred HHHHHHhcC
Confidence 999998876
No 58
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.56 E-value=0.00014 Score=69.36 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=32.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 180 IFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 180 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+|||+++.+++...|... .....+.+-|+|.+|+|||||.+.++..
T Consensus 2 fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999622 2346699999999999999999999884
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=7.9e-05 Score=77.85 Aligned_cols=117 Identities=20% Similarity=0.331 Sum_probs=77.7
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+++++.|.+.+|.+.. +|. + -.+|+.|.++ +|..+..+|..+ ..+|++|++++|..+..+|.+
T Consensus 50 ~~~~l~~L~Is~c~L~s----LP~-L--P~sLtsL~Ls------nc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s- 113 (426)
T PRK15386 50 EARASGRLYIKDCDIES----LPV-L--PNELTEITIE------NCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES- 113 (426)
T ss_pred HhcCCCEEEeCCCCCcc----cCC-C--CCCCcEEEcc------CCCCcccCCchh--hhhhhheEccCcccccccccc-
Confidence 67899999999986543 342 2 1369999998 766677788755 358999999999658888874
Q ss_pred hcCCCCcEeecCCC--cccccccccccCC------------------CcCcEEecCCCcccccCCcccCCCccCcccCeE
Q 036753 502 CELYNLECLNVDDC--QNLRELPRGIGKL------------------RKLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 561 (725)
Q Consensus 502 ~~L~~L~~L~l~~~--~~l~~lp~~i~~L------------------~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~ 561 (725)
|++|++.++ ..+..+|.++..| ++|++|++++|..+ .+|..+. .+|+.|.+.
T Consensus 114 -----Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 114 -----VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred -----cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 555666543 3366788765444 25677777766432 3444333 356666554
Q ss_pred E
Q 036753 562 V 562 (725)
Q Consensus 562 ~ 562 (725)
.
T Consensus 186 ~ 186 (426)
T PRK15386 186 I 186 (426)
T ss_pred c
Confidence 3
No 60
>PTZ00202 tuzin; Provisional
Probab=97.52 E-value=0.00046 Score=71.86 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=60.0
Q ss_pred ccccCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHH
Q 036753 173 SSIDVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRI 252 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 252 (725)
...+...+|||+.+...+...|..... ...+++.|.|++|+|||||++.+... .. ..+++.-+. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~--l~----~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRK--EG----MPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhc--CC----ceEEEECCC--CHHHH
Confidence 334566899999999999999965322 23469999999999999999998863 21 223333333 67999
Q ss_pred HHHHHHHhcCC
Q 036753 253 ARAVIEALKSG 263 (725)
Q Consensus 253 ~~~i~~~l~~~ 263 (725)
++.|+.+++..
T Consensus 326 Lr~LL~ALGV~ 336 (550)
T PTZ00202 326 LRSVVKALGVP 336 (550)
T ss_pred HHHHHHHcCCC
Confidence 99999999875
No 61
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.45 E-value=0.00033 Score=74.14 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=55.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHH
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIAR 254 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 254 (725)
+++++.+...+.++..|... +.|-++|++|+||||+|+.+.+.......|+.+.||++++.++..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 46889999999999999743 3577899999999999999988533345788888999999988666654
No 62
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.45 E-value=0.00012 Score=76.01 Aligned_cols=57 Identities=18% Similarity=0.060 Sum_probs=46.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCC--ccHHHHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEP--FDEFRIARAVIEALK 261 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i~~~l~ 261 (725)
.=..++|+|.+|.|||||++.+++.-. .++|+..+||.+++. .++.++++.++..+-
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vv 225 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVV 225 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEE
Confidence 345789999999999999999999533 347999999999866 789999999865433
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=8.5e-06 Score=88.10 Aligned_cols=125 Identities=21% Similarity=0.164 Sum_probs=70.9
Q ss_pred ccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcc-cCCCccCcccCeE
Q 036753 483 LKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLRRVREF 561 (725)
Q Consensus 483 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~ 561 (725)
|...+.+.|. +..+-.++.-++.|+.|||++|+ +..+- .+..|++|+||+++.| .+..+|.- ...+ .|+.|.+.
T Consensus 166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeec
Confidence 5566666666 66666667777777777777776 44443 5666777777777776 45555532 2222 36666666
Q ss_pred EEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCC
Q 036753 562 VVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRI 620 (725)
Q Consensus 562 ~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l 620 (725)
++... .+..+.+|.+|+.|+++..-. ....+ ...|..+..|+.|+|.+|.+
T Consensus 241 nN~l~-----tL~gie~LksL~~LDlsyNll-~~hse--L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALT-----TLRGIENLKSLYGLDLSYNLL-SEHSE--LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHH-----hhhhHHhhhhhhccchhHhhh-hcchh--hhHHHHHHHHHHHhhcCCcc
Confidence 55433 344555556666665543110 01111 12244456677777777663
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.33 E-value=9.7e-06 Score=87.66 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=45.1
Q ss_pred HhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCccccccccc
Q 036753 446 LFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPRG 524 (725)
Q Consensus 446 ~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~ 524 (725)
.+.-++.|+.|+|+ +|+ +... ..+..|++|+.|||++|. +..+|. +...+. |+.|.+++|. ++.+- +
T Consensus 182 SLqll~ale~LnLs------hNk-~~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~-g 249 (1096)
T KOG1859|consen 182 SLQLLPALESLNLS------HNK-FTKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTLR-G 249 (1096)
T ss_pred HHHHHHHhhhhccc------hhh-hhhh-HHHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhhh-h
Confidence 34445556666666 555 3333 245556666666666665 555553 222232 6666666655 55543 5
Q ss_pred ccCCCcCcEEecCCC
Q 036753 525 IGKLRKLMYLHNEDT 539 (725)
Q Consensus 525 i~~L~~L~~L~l~~~ 539 (725)
|.+|++|++|++++|
T Consensus 250 ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYN 264 (1096)
T ss_pred HHhhhhhhccchhHh
Confidence 566666666666655
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=0.0002 Score=81.39 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=89.7
Q ss_pred ceeEEEeeeecCCCCcccccccCC-CCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNV-TGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~ 475 (725)
.++++|.+.+...- ...++..+ .-+|.|++|.+.+..+.. ..+.....++++|+.||++ +++ +..+ .
T Consensus 122 ~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS------~Tn-I~nl-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDIS------GTN-ISNL-S 189 (699)
T ss_pred HhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecC------CCC-ccCc-H
Confidence 56677776553321 22221111 258999999999876532 2255567899999999999 777 7777 7
Q ss_pred ccccCccccEEEeecCCCccccc--hhhhcCCCCcEeecCCCcccccccc-------cccCCCcCcEEecCCCcc
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLP--ETLCELYNLECLNVDDCQNLRELPR-------GIGKLRKLMYLHNEDTGC 541 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-------~i~~L~~L~~L~l~~~~~ 541 (725)
+|++|++|+.|.+++-. +..-+ ..+.+|++|++||+|..+... .|. .-..||+||.|+.+++..
T Consensus 190 GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 79999999999998766 44322 357889999999999866332 221 113488999999987743
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=4e-05 Score=65.96 Aligned_cols=84 Identities=29% Similarity=0.370 Sum_probs=52.2
Q ss_pred hhcCCcceEEEeccccCCCcccccccccccccc-CccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccc
Q 036753 447 FEKLTCLRALELQVRESWPRNSLIKEIPTNIEK-LLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGI 525 (725)
Q Consensus 447 ~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~-l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i 525 (725)
+.....|...+|+ +|. +..+|+.+.. .+.+..|++.+|. +..+|..+..++.|+.|+++.|+ +...|..+
T Consensus 49 l~~~~el~~i~ls------~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 49 LSKGYELTKISLS------DNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HhCCceEEEEecc------cch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 4455556666666 666 6666655433 3356666666666 66666666666666666666666 55666666
Q ss_pred cCCCcCcEEecCCC
Q 036753 526 GKLRKLMYLHNEDT 539 (725)
Q Consensus 526 ~~L~~L~~L~l~~~ 539 (725)
..|.+|-.|+..++
T Consensus 120 ~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 120 APLIKLDMLDSPEN 133 (177)
T ss_pred HHHHhHHHhcCCCC
Confidence 66666666666555
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=3.4e-05 Score=66.40 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=78.4
Q ss_pred CcceEEEeccccCCCcccccccccc---ccccCccccEEEeecCCCccccchhhhcC-CCCcEeecCCCccccccccccc
Q 036753 451 TCLRALELQVRESWPRNSLIKEIPT---NIEKLLHLKYLNLKGQKKIENLPETLCEL-YNLECLNVDDCQNLRELPRGIG 526 (725)
Q Consensus 451 ~~Lr~L~L~~~~~~~~~~~~~~lp~---~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~i~ 526 (725)
+.+..++|+ .|. +..+++ .+....+|...+|++|. ++.+|+.+... +-+++|++.+|. +..+|..+.
T Consensus 27 kE~h~ldLs------sc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~A 97 (177)
T KOG4579|consen 27 KELHFLDLS------SCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELA 97 (177)
T ss_pred HHhhhcccc------cch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHh
Confidence 456677888 777 555544 35566788889999999 99999888654 489999999998 999999999
Q ss_pred CCCcCcEEecCCCcccccCCcccCCCccCcccCe
Q 036753 527 KLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVRE 560 (725)
Q Consensus 527 ~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~ 560 (725)
.++.|+.|+++.| .+...|.-|..|.+|-.|+.
T Consensus 98 am~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 98 AMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred hhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 9999999999988 45667777766666666654
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.15 E-value=0.00024 Score=68.31 Aligned_cols=242 Identities=19% Similarity=0.145 Sum_probs=128.8
Q ss_pred hhcCCcceEEEeccccCCCcccccc----ccccccccCccccEEEeecCCC---ccccch-------hhhcCCCCcEeec
Q 036753 447 FEKLTCLRALELQVRESWPRNSLIK----EIPTNIEKLLHLKYLNLKGQKK---IENLPE-------TLCELYNLECLNV 512 (725)
Q Consensus 447 ~~~l~~Lr~L~L~~~~~~~~~~~~~----~lp~~i~~l~~Lr~L~L~~~~~---i~~lp~-------~i~~L~~L~~L~l 512 (725)
+.-+..+..++|+ +|.+-. .+...|.+-.+|+..+++.-.. ..++|+ .+-++++|++.+|
T Consensus 26 l~~~d~~~evdLS------GNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 26 LEMMDELVEVDLS------GNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHhhcceeEEecc------CCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 5568899999999 777322 2555677778899998876430 113443 4568999999999
Q ss_pred CCCccccccccc----ccCCCcCcEEecCCCcccccCCc-ccCC----------CccCcccCeEEEcCcCCCc----cCc
Q 036753 513 DDCQNLRELPRG----IGKLRKLMYLHNEDTGCLRYLPA-GIGE----------LIRLRRVREFVVGGGYDRA----CSL 573 (725)
Q Consensus 513 ~~~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~lp~-~i~~----------l~~L~~L~~~~~~~~~~~~----~~~ 573 (725)
++|-+-.+.|+. |++-+.|.||.+++|. ++.+.. .|++ ..+=..|..+.|..+.... ...
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 999866666664 5677899999999883 222211 1221 1111123333333322101 011
Q ss_pred cccccCCCCCceEEeCcCCCCChh-hhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCC
Q 036753 574 GSLKKLNFLQQCGIRGLGGVSDAG-EAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLK 652 (725)
Q Consensus 574 ~~L~~L~~L~~L~i~~~~~~~~~~-~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 652 (725)
..+..-..|+.+.+...+.-+... ......+..+++|+.|+|..|.++-.. ..-+-..+...+.|+
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g-------------S~~La~al~~W~~lr 245 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG-------------SRYLADALCEWNLLR 245 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh-------------HHHHHHHhcccchhh
Confidence 223333455555555433322211 112223445566777777666532111 112233445556677
Q ss_pred cEEEeeecCCCCCccccccc-----CccccceeEEcCCCCCCc------CCC--CCCccccceeeccccc
Q 036753 653 NLGIDEYRGRRNVVPKNWFM-----SLTNLRDLSLFWWSNCEH------LPP--LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 653 ~L~L~~~~~~~~~~~p~~l~-----~l~~L~~L~L~~c~~~~~------lp~--l~~lp~L~~L~L~~~~ 709 (725)
.|.+..|....... .+.+. ..|+|..|....|..-.. +|. -+.+|-|..|.+.+++
T Consensus 246 EL~lnDClls~~G~-~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 246 ELRLNDCLLSNEGV-KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hccccchhhccccH-HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 77776665543111 11111 356677776666642221 222 2456666666666554
No 69
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.08 E-value=0.00062 Score=64.92 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=34.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF 235 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 235 (725)
-+++||-+.-++++.-++..... .++.+.-+-.||.+|+||||||+.+.+ .....|
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 35789988877776555432111 223677788999999999999999988 455555
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00034 Score=68.27 Aligned_cols=186 Identities=18% Similarity=0.077 Sum_probs=102.6
Q ss_pred cCccccEEEeecCCCccccc---hhhhcCCCCcEeecCCCcccc----cccccccCCCcCcEEecCCCccc-ccCCcccC
Q 036753 479 KLLHLKYLNLKGQKKIENLP---ETLCELYNLECLNVDDCQNLR----ELPRGIGKLRKLMYLHNEDTGCL-RYLPAGIG 550 (725)
Q Consensus 479 ~l~~Lr~L~L~~~~~i~~lp---~~i~~L~~L~~L~l~~~~~l~----~lp~~i~~L~~L~~L~l~~~~~~-~~lp~~i~ 550 (725)
...+++.|||.+|. +.... .-+.+|+.|++|+++.|+ +. .+| ..+++|+.|-+.+...- ...-..+.
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCc-CCCccccCc---ccccceEEEEEcCCCCChhhhhhhhh
Confidence 35679999999988 65433 334578888999988876 32 233 23457777777665211 11112233
Q ss_pred CCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccC
Q 036753 551 ELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGR 630 (725)
Q Consensus 551 ~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~ 630 (725)
.++.+++|++..+ ++|.+.+..-. ..++ -+.+++|++..|.
T Consensus 144 ~lP~vtelHmS~N-----------------~~rq~n~Dd~c----~e~~-------s~~v~tlh~~~c~----------- 184 (418)
T KOG2982|consen 144 DLPKVTELHMSDN-----------------SLRQLNLDDNC----IEDW-------STEVLTLHQLPCL----------- 184 (418)
T ss_pred cchhhhhhhhccc-----------------hhhhhcccccc----cccc-------chhhhhhhcCCcH-----------
Confidence 3344444433222 22222221100 0000 0234444444443
Q ss_pred CCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC--CCCcCCCCCCccccceeecccc
Q 036753 631 RENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS--NCEHLPPLGKLKSLESLLIYGM 708 (725)
Q Consensus 631 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~--~~~~lp~l~~lp~L~~L~L~~~ 708 (725)
...-........-+||+..+.+..|++.+..- ......+|.+..|.|..+. .+..+..+.++|+|..|.+.++
T Consensus 185 ----~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~-ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 185 ----EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS-EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred ----HHHHHHHHhHHhhcccchheeeecCcccchhh-cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 01111222233457999999999997765111 2333467888888888874 2334555889999999999999
Q ss_pred cCceE
Q 036753 709 QSVKR 713 (725)
Q Consensus 709 ~~l~~ 713 (725)
|-...
T Consensus 260 Pl~d~ 264 (418)
T KOG2982|consen 260 PLSDP 264 (418)
T ss_pred ccccc
Confidence 85443
No 71
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.92 E-value=0.00079 Score=66.78 Aligned_cols=59 Identities=31% Similarity=0.331 Sum_probs=40.7
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCC
Q 036753 180 IFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEP 246 (725)
Q Consensus 180 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 246 (725)
++||+.+.++|.+++..+ ....+.|+|..|+|||+|++.+.+. .+..-...+|+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEE 59 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTB
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccc
Confidence 589999999999998653 4578889999999999999999883 3221114455544444
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.92 E-value=0.0022 Score=58.18 Aligned_cols=58 Identities=26% Similarity=0.269 Sum_probs=40.6
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCC
Q 036753 181 FGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEP 246 (725)
Q Consensus 181 vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 246 (725)
+|++..++.+...+... .-..+-|+|..|+||||+|+.+++. ....-...+++..++.
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhh
Confidence 47788888888888543 3467889999999999999999984 3222223445544443
No 73
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.89 E-value=0.00099 Score=68.69 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=42.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+++|.++.++++++++..........-+++.++|..|.||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997754322345689999999999999999999873
No 74
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.74 E-value=0.0018 Score=57.63 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=42.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhcc-----ccceeeeecCCCccHHHHHHHHHHHhcCC
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKH-----FDERIWVCVSEPFDEFRIARAVIEALKSG 263 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 263 (725)
+-+++.|+|..|+||||+++.+.++ .... -...+|+......+...+.+.|+.++...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 65 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP 65 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc
Confidence 4567889999999999999999884 2221 34456888887778999999999999886
No 75
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0058 Score=66.93 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCC---------ccccccCCccccchhhHHHHHHHHhcCCCC
Q 036753 130 DIALKIKEINETLDNIDKQKAMFRFAANVIKSTERADQRGP---------SISSIDVSEIFGRPKEKKELVDRLLCEGSK 200 (725)
Q Consensus 130 ~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~vG~~~~~~~l~~~L~~~~~~ 200 (725)
.+.+.+.+-..||+.+-.....|++..+..+-- ...+|.. .+.-+-+++=+|+++-+++|++.+....-.
T Consensus 355 ~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwl-t~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr 433 (906)
T KOG2004|consen 355 HVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWL-TSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR 433 (906)
T ss_pred HHHHHHHHHHHHHhccCccccchhHHHHHHHHH-HhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc
Confidence 444555555556666666666666544321100 0001111 111122445799999999999999765433
Q ss_pred CCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc
Q 036753 201 EQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF 235 (725)
Q Consensus 201 ~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 235 (725)
+.-+-++++.+|.+|+|||.+|+.|.. .....|
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 445678999999999999999999987 443333
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.69 E-value=0.00052 Score=66.10 Aligned_cols=244 Identities=15% Similarity=0.094 Sum_probs=156.5
Q ss_pred CcccccEEEeccCCcccc-ccchhHHhhcCCcceEEEeccccCCCccccccccc-------cccccCccccEEEeecCCC
Q 036753 422 GLRGLRSLLVKSDEYSWS-SEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-------TNIEKLLHLKYLNLKGQKK 493 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-------~~i~~l~~Lr~L~L~~~~~ 493 (725)
.+..+..+++++|.+... ..++...+.+-++|++.+++.- +.+-. ...+| +.+-++++|+..+|+.|-.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~-kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRD-KDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhccc-HHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 678899999999987432 2235666788899999998721 00111 12233 3456789999999999984
Q ss_pred ccccch----hhhcCCCCcEeecCCCccccccccc--------------ccCCCcCcEEecCCCcccccCCcc-----cC
Q 036753 494 IENLPE----TLCELYNLECLNVDDCQNLRELPRG--------------IGKLRKLMYLHNEDTGCLRYLPAG-----IG 550 (725)
Q Consensus 494 i~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~~--------------i~~L~~L~~L~l~~~~~~~~lp~~-----i~ 550 (725)
-...|+ -|++-+.|.+|.+++|. ++.+..+ +..-+.|+......|. +...|.. +.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~ 182 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLE 182 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHH
Confidence 445554 56788999999999997 5433221 2344678998888773 3333322 22
Q ss_pred CCccCcccCeEEEcCcCCCccCc-----cccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCc
Q 036753 551 ELIRLRRVREFVVGGGYDRACSL-----GSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDE 625 (725)
Q Consensus 551 ~l~~L~~L~~~~~~~~~~~~~~~-----~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~ 625 (725)
.-.+|+++.+..+... +..+ -.+..+++|..|++............+...++.++.|+.|.+..|-++..+.
T Consensus 183 sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 183 SHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred hhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 2247777777766554 3322 3456778888888876443333345555667888899999999887654432
Q ss_pred ccccCCCCCchhHHHHhhhcC--CCCCCCcEEEeeecCCCCCcc----ccccc-CccccceeEEcCCC
Q 036753 626 EQAGRRENEEDEDERLLEALG--PPPNLKNLGIDEYRGRRNVVP----KNWFM-SLTNLRDLSLFWWS 686 (725)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~~~----p~~l~-~l~~L~~L~L~~c~ 686 (725)
..++..+. ..|+|..|....|.....++- |.... .+|-|..|.+.+|.
T Consensus 260 -------------~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 260 -------------KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred -------------HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 33444443 358899998877754332220 22222 68899999999884
No 77
>PRK07261 topology modulation protein; Provisional
Probab=96.63 E-value=0.0029 Score=59.25 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=32.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhh-hccccceeeeecCCCccHHHHHHHHHHHh
Q 036753 207 IISLVGMGGIGKTTLAQFAYNNDDV-KKHFDERIWVCVSEPFDEFRIARAVIEAL 260 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 260 (725)
.|.|+|++|+||||||+.+.....+ .-+.|...|-......+..++...+..-+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 4889999999999999998753222 12456555643333334444544444433
No 78
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.60 E-value=0.0016 Score=57.07 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||.|.|..|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 79
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.56 E-value=0.0024 Score=66.88 Aligned_cols=51 Identities=29% Similarity=0.333 Sum_probs=39.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-++++|++..++.+..++..... .......+-|+|..|+||||||+.+.+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 35799999999998888864211 1234567789999999999999999883
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.55 E-value=0.0017 Score=67.50 Aligned_cols=49 Identities=33% Similarity=0.354 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++||++..++.+..++..... .......+-++|..|+||||||+.+.+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988864321 122455677999999999999999987
No 81
>PRK07667 uridine kinase; Provisional
Probab=96.53 E-value=0.0094 Score=57.12 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 186 EKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.++|.+.+.... +...+|||-|.+|.||||+|+.+..
T Consensus 2 ~~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 2 STNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CHHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567777775543 3568999999999999999999987
No 82
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.44 E-value=0.003 Score=58.55 Aligned_cols=66 Identities=30% Similarity=0.325 Sum_probs=48.8
Q ss_pred hhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC--CCCcCCCCCCccccceeeccccc
Q 036753 642 LEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS--NCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 642 ~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~--~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
.+.+..++.|..|.+.+|.+.. +.|.--..+++|..|.|.+|+ .++++.++..+|.|++|.+-+++
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 3456667888888888888877 655544467888888888875 45567777888888888887776
No 83
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.43 E-value=0.033 Score=63.25 Aligned_cols=61 Identities=34% Similarity=0.431 Sum_probs=44.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcccc---ceeeeecC
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFD---ERIWVCVS 244 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs 244 (725)
++++|.+..+..+...+... ....+.|+|..|+||||||+.+++.......+. ..-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 46899999999988877432 345799999999999999999998543333332 34566654
No 84
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.008 Score=66.22 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=44.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF 235 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 235 (725)
.+=+|.+.-+++|++.|....-...-.-.+++.||.+|+|||.|++.|.+ ...+.|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 35699999999999999765432333457999999999999999999987 455555
No 85
>PRK06696 uridine kinase; Validated
Probab=96.33 E-value=0.0047 Score=60.74 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 183 RPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 183 ~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
|++-+++|.+.+.... .+...+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5566777777776532 24788999999999999999999986
No 86
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.30 E-value=0.0038 Score=57.86 Aligned_cols=61 Identities=26% Similarity=0.318 Sum_probs=28.8
Q ss_pred cccCccccEEEeecCCCccccchhhhc-CCCCcEeecCCCcccccccc--cccCCCcCcEEecCCC
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCE-LYNLECLNVDDCQNLRELPR--GIGKLRKLMYLHNEDT 539 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~ 539 (725)
+..++.|.+|.+.+|. |+.+-+.+.. +++|++|.+.+|+ +.++-+ .+..+++|++|.+-+|
T Consensus 60 lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCC
Confidence 4445555555555555 4444333332 3445555555554 333221 1334445555554444
No 87
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.21 E-value=0.014 Score=59.41 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=38.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHHHHHHhcCC
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARAVIEALKSG 263 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 263 (725)
...++.|+|..|+|||||++.+++.... ..+ ..+|+. ....+..++++.|...++..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~ 98 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLE 98 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCC
Confidence 3457899999999999999999985321 111 123333 33457778888888877554
No 88
>PTZ00301 uridine kinase; Provisional
Probab=96.17 E-value=0.0062 Score=58.82 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|||.|.+|.||||||+.+.+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 357999999999999999998876
No 89
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.16 E-value=0.0062 Score=61.32 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=44.4
Q ss_pred cccCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHH
Q 036753 174 SIDVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIA 253 (725)
Q Consensus 174 ~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 253 (725)
++..+.+||-+.-...+++ .+.+.-+-.||.+|+||||||+.+.+..+-.. .-||..|-.-.-.+=.
T Consensus 140 yvGQ~hlv~q~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDV 206 (554)
T ss_pred hcchhhhcCcchHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHH
Confidence 3445556665444333332 23566677999999999999999988533322 3356666544333334
Q ss_pred HHHHHHhc
Q 036753 254 RAVIEALK 261 (725)
Q Consensus 254 ~~i~~~l~ 261 (725)
++|+++..
T Consensus 207 R~ife~aq 214 (554)
T KOG2028|consen 207 RDIFEQAQ 214 (554)
T ss_pred HHHHHHHH
Confidence 44544443
No 90
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.0024 Score=61.74 Aligned_cols=62 Identities=42% Similarity=0.563 Sum_probs=27.3
Q ss_pred hhcCCcceEEEeccccCCCcc--ccccccccccccCccccEEEeecCCCccc---cchhhhcCCCCcEeecCCCc
Q 036753 447 FEKLTCLRALELQVRESWPRN--SLIKEIPTNIEKLLHLKYLNLKGQKKIEN---LPETLCELYNLECLNVDDCQ 516 (725)
Q Consensus 447 ~~~l~~Lr~L~L~~~~~~~~~--~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~---lp~~i~~L~~L~~L~l~~~~ 516 (725)
|+.+++|+.|.++ .| .....++....++++|++|++++|+ +.. +++ +.++.+|..||+.+|.
T Consensus 61 ~P~Lp~LkkL~ls------dn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELS------DNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhccc------CCcccccccceehhhhCCceeEEeecCCc-cccccccch-hhhhcchhhhhcccCC
Confidence 3344555555555 44 2122233333344555555555555 332 111 3344445555555544
No 91
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.09 E-value=0.0021 Score=62.05 Aligned_cols=85 Identities=22% Similarity=0.195 Sum_probs=47.9
Q ss_pred ccCccccEEEeecC--CCccccchhhhcCCCCcEeecCCCccccccccc---ccCCCcCcEEecCCCcccccCCc----c
Q 036753 478 EKLLHLKYLNLKGQ--KKIENLPETLCELYNLECLNVDDCQNLRELPRG---IGKLRKLMYLHNEDTGCLRYLPA----G 548 (725)
Q Consensus 478 ~~l~~Lr~L~L~~~--~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~---i~~L~~L~~L~l~~~~~~~~lp~----~ 548 (725)
-.|++|++|.++.| +....++....++++|++|++++|+ +.. ++. +..+.+|..|++.+|.... +-. .
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~v 138 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELENLKSLDLFNCSVTN-LDDYREKV 138 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcchhhhhcccCCccc-cccHHHHH
Confidence 34677777777777 4344566666666777777777776 332 222 3455566666666663322 111 1
Q ss_pred cCCCccCcccCeEEEcC
Q 036753 549 IGELIRLRRVREFVVGG 565 (725)
Q Consensus 549 i~~l~~L~~L~~~~~~~ 565 (725)
+.-+++|..|+.+.+..
T Consensus 139 f~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHHhhhhccccccccCC
Confidence 33445555555555443
No 92
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.04 E-value=0.09 Score=47.31 Aligned_cols=83 Identities=12% Similarity=0.174 Sum_probs=65.8
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc-CcHHHHHHHHHHHHHhhhhhhhh
Q 036753 2 VDAFISPLLQQLTSMAVEEAKEQVRLVTGVGKEVEKLTSNLRAIQAVLHDAEKRQV-KDETVKLWLDQLRDACYDMEDVL 80 (725)
Q Consensus 2 a~~~v~~~~~kl~~~l~~~~~~e~~~~~~v~~~~~~L~~~L~~i~~~L~~ae~~~~-~~~~~~~wl~~lr~~aydaeD~l 80 (725)
|+.+.+++++.+.+.|...+.+.......++.-+++|..++.+|.-++++.+.... -+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 55666666666666666688888888999999999999999999999999987532 23333677888999999999998
Q ss_pred hhhh
Q 036753 81 GEWS 84 (725)
Q Consensus 81 D~~~ 84 (725)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8764
No 93
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.012 Score=60.51 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=33.0
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF 235 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 235 (725)
+....++|.+....++++ . +.+.-+=.||.+|+||||||+.+-. .....|
T Consensus 27 vGQ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f 76 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF 76 (436)
T ss_pred cChHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHH--hhCCce
Confidence 444556666555554443 1 2455555999999999999999877 344454
No 94
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.02 E-value=0.015 Score=66.07 Aligned_cols=86 Identities=17% Similarity=0.046 Sum_probs=58.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhh---hccccce--eeeecCCCccHHH
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDV---KKHFDER--IWVCVSEPFDEFR 251 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~---~~~F~~~--~wv~vs~~~~~~~ 251 (725)
++.++||++++++|...|...-. +...-.++-|+|..|.|||+.++.|.+.-+- +...... ++|....-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 46799999999999998865321 1223467889999999999999999874211 1122222 3443344456778
Q ss_pred HHHHHHHHhcCC
Q 036753 252 IARAVIEALKSG 263 (725)
Q Consensus 252 l~~~i~~~l~~~ 263 (725)
+...|..++.+.
T Consensus 833 IYqvI~qqL~g~ 844 (1164)
T PTZ00112 833 AYQVLYKQLFNK 844 (1164)
T ss_pred HHHHHHHHHcCC
Confidence 888888888554
No 95
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.92 E-value=0.011 Score=64.09 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=33.3
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKE---LVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+++||.+..+.. +..++... ....+-++|.+|+||||||+.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 357777766544 66666432 4556778999999999999999873
No 96
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0074 Score=53.90 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=27.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhcc-ccceeeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKH-FDERIWVC 242 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~ 242 (725)
.--|.|.||+|+||||+++.+.+ .++.. |...-|++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 34588999999999999999998 45443 66555543
No 97
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.78 E-value=0.0071 Score=65.79 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=40.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++|.++.+++|++.|......-...-+++.++|..|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6899999999999999432211223567999999999999999999987
No 98
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.77 E-value=0.045 Score=64.25 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+++|.+..+++|.+++..........-.++.++|..|+||||+|+.+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999877533211122345899999999999999999987
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.75 E-value=0.0072 Score=64.34 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=40.9
Q ss_pred cccCCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 174 SIDVSEIFGRPKEKKELVDRLLCEGSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 174 ~~~~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+..+++.|++..+++|.+.+...-.+ +-...+-|-++|.+|+||||+|+++.+.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 344567999999999999887532110 1123456889999999999999999883
No 100
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.01 Score=58.12 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=41.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF 235 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 235 (725)
.++||-++-++++-=.+..... .++.+--|-++|.+|.||||||+-+.+ ++...+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 4689988877777665544332 455788899999999999999999988 444443
No 101
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.71 E-value=0.0076 Score=57.86 Aligned_cols=21 Identities=48% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||||.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999977
No 102
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.68 E-value=0.0013 Score=73.09 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=10.6
Q ss_pred ccccccccCcEEEEecC
Q 036753 603 ELEKKKYLLKLGLHFDR 619 (725)
Q Consensus 603 ~l~~~~~L~~L~L~~~~ 619 (725)
.+..+++|+.+.|..+.
T Consensus 357 ~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHhcCCCcchhhhhhhh
Confidence 34556677777776654
No 103
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.68 E-value=0.0089 Score=58.19 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=22.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+..+|+|.|..|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999887
No 104
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.00093 Score=64.67 Aligned_cols=100 Identities=26% Similarity=0.271 Sum_probs=58.3
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccch--
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPE-- 499 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~-- 499 (725)
.+.+.+.|++.++.++.+ ....+|+.|+||.|+ -|. +..+ ..+..+.+|+.|.|+.|. |..+-+
T Consensus 17 dl~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLS------vNk-IssL-~pl~rCtrLkElYLRkN~-I~sldEL~ 82 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLS------VNK-ISSL-APLQRCTRLKELYLRKNC-IESLDELE 82 (388)
T ss_pred HHHHhhhhcccCCCccHH-----HHHHhcccceeEEee------ccc-cccc-hhHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 345566666666665332 124667777777777 665 5555 336667777777777776 555442
Q ss_pred hhhcCCCCcEeecCCCccccccccc-----ccCCCcCcEEe
Q 036753 500 TLCELYNLECLNVDDCQNLRELPRG-----IGKLRKLMYLH 535 (725)
Q Consensus 500 ~i~~L~~L~~L~l~~~~~l~~lp~~-----i~~L~~L~~L~ 535 (725)
-+.+|++|++|-|..|.....-+.. +.-|++|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 3456666666666666544443332 34455555554
No 105
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0056 Score=35.26 Aligned_cols=19 Identities=32% Similarity=0.863 Sum_probs=10.1
Q ss_pred ccEEEeecCCCccccchhhh
Q 036753 483 LKYLNLKGQKKIENLPETLC 502 (725)
Q Consensus 483 Lr~L~L~~~~~i~~lp~~i~ 502 (725)
|++|+|++|. ++.+|++++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 5555555554 555555443
No 106
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.0012 Score=63.83 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=37.9
Q ss_pred ccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccc--cccCCCcCcEEecCCCcccccCCcc-----cC
Q 036753 478 EKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYLPAG-----IG 550 (725)
Q Consensus 478 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~-----i~ 550 (725)
.+|+.|+.|.|+-|+ |+.|-+ +..+++|+.|.|+.|. +..+-+ -+.+|++|+.|-|..|.....-+.. +.
T Consensus 38 ~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 345555555555555 544433 5555555555555544 333322 1345555555555555443332221 33
Q ss_pred CCccCcccCe
Q 036753 551 ELIRLRRVRE 560 (725)
Q Consensus 551 ~l~~L~~L~~ 560 (725)
-|++|+.|+-
T Consensus 115 ~LPnLkKLDn 124 (388)
T KOG2123|consen 115 VLPNLKKLDN 124 (388)
T ss_pred HcccchhccC
Confidence 4455555543
No 107
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.57 E-value=0.014 Score=55.00 Aligned_cols=36 Identities=31% Similarity=0.592 Sum_probs=29.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
...+|.++|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 556999999999999999999998 455556555555
No 108
>PF05729 NACHT: NACHT domain
Probab=95.53 E-value=0.015 Score=54.01 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=28.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhcc----ccceeeeecCCC
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNNDDVKKH----FDERIWVCVSEP 246 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~ 246 (725)
+++-|+|.+|+||||+++.+..+-.-... |....|......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDI 45 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhh
Confidence 57899999999999999999885322222 344556655443
No 109
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.50 E-value=0.01 Score=57.60 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|..|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999986
No 110
>PRK08233 hypothetical protein; Provisional
Probab=95.47 E-value=0.012 Score=55.80 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999999876
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.46 E-value=0.0091 Score=63.93 Aligned_cols=54 Identities=22% Similarity=0.211 Sum_probs=40.3
Q ss_pred ccCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~-------~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+..+++.|+++.++++.+.+...-. -+-...+-|-++|.+|+|||++|+++.+.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 4455799999999999887743111 01234566889999999999999999873
No 112
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.45 E-value=0.011 Score=52.30 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|+|.|..|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 113
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.049 Score=57.42 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=60.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccc--eeeeecCCCccHHHHHHHH
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDE--RIWVCVSEPFDEFRIARAV 256 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~l~~~i 256 (725)
.+.+|+++.+++...|...-. ++...-+-|+|..|.|||+.++.|.+ +++..... .++|..-......++..+|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 499999999999998875332 11222388999999999999999998 44443222 5666666677889999999
Q ss_pred HHHhcCC
Q 036753 257 IEALKSG 263 (725)
Q Consensus 257 ~~~l~~~ 263 (725)
+.++...
T Consensus 94 ~~~~~~~ 100 (366)
T COG1474 94 LNKLGKV 100 (366)
T ss_pred HHHcCCC
Confidence 9998743
No 114
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.31 E-value=0.045 Score=63.69 Aligned_cols=50 Identities=26% Similarity=0.411 Sum_probs=39.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+.+|.+.-+++|+++|..........-.++.++|..|+||||+|+.+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998753211122456899999999999999999886
No 115
>PRK06547 hypothetical protein; Provisional
Probab=95.25 E-value=0.024 Score=52.90 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....+|+|.|..|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999998763
No 116
>PRK04195 replication factor C large subunit; Provisional
Probab=95.20 E-value=0.017 Score=63.90 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=40.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-++++|.+..++++.+++..... +...+.+-|+|..|+||||+|+.+.++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35699999999999999965321 123678899999999999999999874
No 117
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.18 E-value=0.014 Score=45.21 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|.|..|+||||+|+.+-+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 118
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.17 E-value=0.033 Score=54.94 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=36.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecC
Q 036753 183 RPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVS 244 (725)
Q Consensus 183 ~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (725)
.+..++.+..++.. .....|-|+|..|+||||||+.+++. ........+++.++
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 34566666666532 24567889999999999999999984 33333344555543
No 119
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.016 Score=55.36 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+.+|||.|-+|.||||+|+.+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3678999999999999999999887
No 120
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.07 E-value=0.063 Score=54.91 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=63.8
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHH
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARA 255 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 255 (725)
-++.+.+|+.+++.+..++...+. --...|-|+|-.|.|||.+.+.+++.. . -..+|+++-..|..+.++.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHH
Confidence 356789999999999998865431 234556899999999999999999853 1 23589999999999999999
Q ss_pred HHHHhc
Q 036753 256 VIEALK 261 (725)
Q Consensus 256 i~~~l~ 261 (725)
|+.+..
T Consensus 76 IL~~~~ 81 (438)
T KOG2543|consen 76 ILNKSQ 81 (438)
T ss_pred HHHHhc
Confidence 999985
No 121
>PRK06762 hypothetical protein; Provisional
Probab=95.02 E-value=0.018 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.7
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|+|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 122
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.97 E-value=0.0042 Score=69.08 Aligned_cols=113 Identities=20% Similarity=0.185 Sum_probs=55.9
Q ss_pred hhcCCcceEEEeccccCCCccccccc--cccccccCccccEEEeecC-CCccccc----hhhhcCCCCcEeecCCCcccc
Q 036753 447 FEKLTCLRALELQVRESWPRNSLIKE--IPTNIEKLLHLKYLNLKGQ-KKIENLP----ETLCELYNLECLNVDDCQNLR 519 (725)
Q Consensus 447 ~~~l~~Lr~L~L~~~~~~~~~~~~~~--lp~~i~~l~~Lr~L~L~~~-~~i~~lp----~~i~~L~~L~~L~l~~~~~l~ 519 (725)
...+++|+.|.+. ++..+.. +-......++|+.|+++++ ..+...+ .....+++|+.|++++|..+.
T Consensus 184 ~~~~~~L~~l~l~------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 184 LSSCPLLKRLSLS------GCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HhhCchhhHhhhc------ccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 3446777777777 4433333 2233456677777777762 2122211 233456777777777766322
Q ss_pred cc-cccc-cCCCcCcEEecCCCccccc--CCcccCCCccCcccCeEEEcC
Q 036753 520 EL-PRGI-GKLRKLMYLHNEDTGCLRY--LPAGIGELIRLRRVREFVVGG 565 (725)
Q Consensus 520 ~l-p~~i-~~L~~L~~L~l~~~~~~~~--lp~~i~~l~~L~~L~~~~~~~ 565 (725)
.. -..+ ..+++|++|.+.+|..+.. +-.....+++|++|++..+..
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 11 0111 2255677776666643211 111123445566666555443
No 123
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.91 E-value=0.034 Score=56.18 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=32.7
Q ss_pred ccccchhhHHHHHHHHh---c------CCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLL---C------EGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~---~------~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|.+..++.|.+... . ..-...+...-+-++|.+|+||||+|+.+.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 48898877766643321 1 1001123455677999999999999999976
No 124
>PF13173 AAA_14: AAA domain
Probab=94.90 E-value=0.025 Score=50.08 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=28.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCC
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEP 246 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 246 (725)
-+++.|.|..|+|||||++.++.+.. .....+++...+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCH
Confidence 36889999999999999999987422 2345566655543
No 125
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.89 E-value=0.028 Score=55.46 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=23.1
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+...+|||.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999998886
No 126
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.88 E-value=0.079 Score=52.40 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=60.1
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-hcc-ccCcHHHHHHHHHHHHHhhhhhhhhh
Q 036753 4 AFISPLLQQLTSMAVEEAKEQVRLVTGVGKEVEKLTSNLRAIQAVLHDA-EKR-QVKDETVKLWLDQLRDACYDMEDVLG 81 (725)
Q Consensus 4 ~~v~~~~~kl~~~l~~~~~~e~~~~~~v~~~~~~L~~~L~~i~~~L~~a-e~~-~~~~~~~~~wl~~lr~~aydaeD~lD 81 (725)
+.|..++++|-. +......++.-++.+++.++.+++.+|.||+.. ++. ...+ ..+.+..++-+.||++|.++|
T Consensus 296 GyVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~-~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 296 GYVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHD-TNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred cHHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhh-hhhhHHHHHHHHHhheeeeee
Confidence 345666777766 555555666778899999999999999999987 442 3344 489999999999999999998
Q ss_pred hhh
Q 036753 82 EWS 84 (725)
Q Consensus 82 ~~~ 84 (725)
-+.
T Consensus 371 aCi 373 (402)
T PF12061_consen 371 ACI 373 (402)
T ss_pred hhh
Confidence 764
No 127
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.83 E-value=0.067 Score=55.64 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=54.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc----hhhhccccceeeee-cCCCccHHHH
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN----DDVKKHFDERIWVC-VSEPFDEFRI 252 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~-vs~~~~~~~l 252 (725)
++++|-+..++++...+..+. -....-++|..|+||||+|+.+++. .....|.|...|.. -+....+.+|
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH
Confidence 468999999999999986432 3467789999999999999988862 11235677767765 3444555553
Q ss_pred HHHHHHHhc
Q 036753 253 ARAVIEALK 261 (725)
Q Consensus 253 ~~~i~~~l~ 261 (725)
+++.+.+.
T Consensus 79 -r~~~~~~~ 86 (313)
T PRK05564 79 -RNIIEEVN 86 (313)
T ss_pred -HHHHHHHh
Confidence 34555443
No 128
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.82 E-value=0.037 Score=49.75 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=27.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCC
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSE 245 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (725)
++|.|+|..|+|||||++.+.+. -.++.+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 48999999999999999999984 2235555555665554
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.82 E-value=0.037 Score=57.74 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=39.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-++++|.+..++.+..++..+ .-..++-++|..|+||||+|+.+++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 457999999999999998643 23567778999999999999999873
No 130
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.029 Score=61.80 Aligned_cols=46 Identities=26% Similarity=0.259 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++++|-+..++.|..++.... -...+-++|..|+||||+|+.+.+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999988888888886532 3466789999999999999998774
No 131
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.81 E-value=0.03 Score=59.11 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|++..++.+..++... ....+-++|..|+||||+|+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999998888543 344577999999999999999876
No 132
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.73 E-value=0.031 Score=64.15 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=35.2
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc
Q 036753 178 SEIFGRPKEKK---ELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF 235 (725)
Q Consensus 178 ~~~vG~~~~~~---~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 235 (725)
++++|.+..+. .+..++.. +.+..+-++|.+|+||||||+.+.+. ....|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcc
Confidence 46888877664 34455532 24556679999999999999999973 44444
No 133
>PRK04040 adenylate kinase; Provisional
Probab=94.73 E-value=0.025 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|+|+.|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 134
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.66 E-value=0.045 Score=49.76 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=25.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
-.||-|.|..|.||||||+.+.. +....-....++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 35889999999999999999988 444433333333
No 135
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.62 E-value=0.02 Score=55.14 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||||.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 136
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.62 E-value=0.028 Score=50.81 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||-++|+.|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 137
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.61 E-value=0.02 Score=54.09 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||+|.|..|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998877
No 138
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.58 E-value=0.033 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 567999999999999999999886
No 139
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.57 E-value=0.027 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.|+|..|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998875
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.57 E-value=0.033 Score=65.81 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.++||+.+++++++.|.... .-. +-+||.+|+|||++|+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-----~~n-~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-----KNN-PILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-----cCC-eEEECCCCCCHHHHHHHHHH
Confidence 358999999999999997542 122 34999999999999998876
No 141
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.50 E-value=0.021 Score=55.86 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|||.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 142
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.42 E-value=0.038 Score=52.17 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 143
>PRK03839 putative kinase; Provisional
Probab=94.42 E-value=0.028 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.|.|+|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 144
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.41 E-value=0.059 Score=54.69 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=21.8
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....+|||.|..|+||||+|+.+-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987754
No 145
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.35 E-value=0.019 Score=33.03 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=13.1
Q ss_pred CCcEeecCCCcccccccccccC
Q 036753 506 NLECLNVDDCQNLRELPRGIGK 527 (725)
Q Consensus 506 ~L~~L~l~~~~~l~~lp~~i~~ 527 (725)
+|++||+++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46677777774 5566665543
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.34 E-value=0.041 Score=64.78 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.++||+.++.++++.|.... ..-+-+||.+|+||||+|+.+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHH
Confidence 368999999999999997542 22334899999999999999887
No 147
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.32 E-value=0.038 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.+|.|+|..|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999873
No 148
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.27 E-value=0.05 Score=56.87 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-++++|+++.++.+..++... ....+-++|..|+||||+|+.+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999988543 3445789999999999999999873
No 149
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.26 E-value=0.087 Score=51.19 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=36.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIAR 254 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 254 (725)
.-+++-|+|.+|+||||+|.++... ....-..++|++... +....+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 5689999999999999999988763 334456788998865 66655544
No 150
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.029 Score=52.84 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...+|+|=||=|+||||||+++-++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHH
Confidence 3578999999999999999988774
No 151
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.18 E-value=0.044 Score=50.23 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=25.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhc-cccceeeee
Q 036753 207 IISLVGMGGIGKTTLAQFAYNNDDVKK-HFDERIWVC 242 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~ 242 (725)
||+|+|..|+|||||++.+.. ..+. .+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEec
Confidence 689999999999999999988 3333 344444443
No 152
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.17 E-value=0.062 Score=57.11 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|-+..++.+...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHH
Confidence 468999999999998886432 346778999999999999999876
No 153
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.15 E-value=0.044 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+...+|.|+|+.|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3677999999999999999999876
No 154
>PRK10536 hypothetical protein; Provisional
Probab=94.15 E-value=0.22 Score=49.11 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=36.8
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+...+.++.......+.+|.. ..+|.+.|..|.|||+||.++..+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344578889999999998853 238899999999999999988764
No 155
>CHL00181 cbbX CbbX; Provisional
Probab=94.11 E-value=0.091 Score=53.61 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=31.6
Q ss_pred ccccchhhHHHHHHHHh---cC-----CC-CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLL---CE-----GS-KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~---~~-----~~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++|.+.-+++|.++.. .. .. .....-..|-++|.+|+||||+|+.+.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 57888777775554431 11 00 0111233477899999999999999976
No 156
>PLN03025 replication factor C subunit; Provisional
Probab=94.08 E-value=0.098 Score=54.58 Aligned_cols=44 Identities=23% Similarity=0.103 Sum_probs=34.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|-++.++.+..++... ...-+-++|..|+||||+|+.+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 46899888888887776532 344466999999999999999876
No 157
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.05 E-value=0.059 Score=58.05 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=35.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|+++.++.+...+..+.+ |-|+|.+|+||||||+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~h--------VLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGES--------VFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCCC--------EEEECCCChhHHHHHHHHHH
Confidence 489999999999988876543 66899999999999999986
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.05 E-value=0.053 Score=64.07 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.++||+.+++++++.|.... -.-+-+||.+|+||||+|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHH
Confidence 359999999999999997642 22344899999999999998877
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.03 E-value=0.036 Score=49.19 Aligned_cols=21 Identities=48% Similarity=0.458 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|-|+|..|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999984
No 160
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.01 E-value=0.079 Score=46.79 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 185 KEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++.+++-+.|...- ..-.+|.+.|.-|.||||+++.+...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555554321 13458999999999999999998873
No 161
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.00 E-value=0.053 Score=63.25 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.++||+.+++++++.|.... .-. +-+||.+|+||||+|+.+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-----~~n-~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-----KNN-PLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-----CCc-eEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999996542 122 358999999999999999873
No 162
>PRK00625 shikimate kinase; Provisional
Probab=94.00 E-value=0.038 Score=51.65 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.|-++||.|+||||+|+.+-+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999998865
No 163
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.98 E-value=0.04 Score=52.06 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++.|+|+.|+||||||+.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999866
No 164
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.95 E-value=0.073 Score=54.62 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=44.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.+++|+++..+++++.+.......+..-+|+-++|.-|.||+|||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999876654566789999999999999999998876
No 165
>PHA00729 NTP-binding motif containing protein
Probab=93.94 E-value=0.072 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4557889999999999999999873
No 166
>PRK06893 DNA replication initiation factor; Validated
Probab=93.92 E-value=0.051 Score=53.61 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=28.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecC
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVS 244 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (725)
-..+-+||..|+|||+||+++.+. .........|++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 356889999999999999999984 33334455677664
No 167
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.90 E-value=0.044 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....|.++|++|+||||+|+.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999877
No 168
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.89 E-value=0.12 Score=51.25 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecC
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVS 244 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (725)
...+-|+|..|+|||+||+.+.+. ....-..+.++++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 357889999999999999999884 33322334455554
No 169
>PRK06217 hypothetical protein; Validated
Probab=93.85 E-value=0.04 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.|.|.|..|.||||+|+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 170
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.82 E-value=0.046 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|.|+|..|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 171
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.80 E-value=0.064 Score=51.81 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=42.3
Q ss_pred ccccCCccccchhhHHH---HHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 173 SSIDVSEIFGRPKEKKE---LVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.+.-+++||-++.+.+ |++.|.....=++...+-|-.+|..|.|||.+|+++.|.
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 44555689999887664 566665433224567888999999999999999999985
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.76 E-value=0.047 Score=48.78 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..+.|+|..|+||||+|+.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 47889999999999999999873
No 173
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.076 Score=58.06 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||.+..++.+...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 469999888787777775431 235678999999999999999866
No 174
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.71 E-value=0.092 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....+-|+|..|+|||+||+.+++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999984
No 175
>COG3899 Predicted ATPase [General function prediction only]
Probab=93.70 E-value=0.11 Score=61.21 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=53.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcccccee---eeec---CCCccHHHH
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERI---WVCV---SEPFDEFRI 252 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~v---s~~~~~~~l 252 (725)
.++||+.+.+.+...+..-. .+.-.|+.+.|..|||||+|++.|.. .+.+.+...+ +-.. +.-....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 37999999999999987643 23556999999999999999999988 4444322111 1111 111235567
Q ss_pred HHHHHHHhcC
Q 036753 253 ARAVIEALKS 262 (725)
Q Consensus 253 ~~~i~~~l~~ 262 (725)
.++++.++..
T Consensus 76 ~r~l~~~ll~ 85 (849)
T COG3899 76 FRDLMGQLLS 85 (849)
T ss_pred HHHHHHHHhh
Confidence 7777777743
No 176
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.70 E-value=0.042 Score=49.89 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||.|+|..|+||||+|+.+-.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 177
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.68 E-value=0.17 Score=53.38 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=48.9
Q ss_pred ccccchhhHHHHHHHHhcC-------CC-CCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc---cceeeeecCCC-
Q 036753 179 EIFGRPKEKKELVDRLLCE-------GS-KEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF---DERIWVCVSEP- 246 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~-------~~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~- 246 (725)
.++|.++.++.+.-.+... .. ......+-|-++|..|+||||+|+.+... +...| +..-|..++..
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCccc
Confidence 4889888888887666532 00 01112367889999999999999999873 33333 32223322221
Q ss_pred ccHHHHHHHHHHHh
Q 036753 247 FDEFRIARAVIEAL 260 (725)
Q Consensus 247 ~~~~~l~~~i~~~l 260 (725)
.+...+.+.+.+..
T Consensus 91 ~dvE~i~r~l~e~A 104 (441)
T TIGR00390 91 RDVESMVRDLTDAA 104 (441)
T ss_pred CCHHHHHHHHHHHH
Confidence 25667777766554
No 178
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.68 E-value=0.046 Score=53.12 Aligned_cols=27 Identities=44% Similarity=0.575 Sum_probs=23.3
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcch
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNND 229 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~~ 229 (725)
+....|-++||+|.||||..|.++.+-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 456788899999999999999999853
No 179
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.67 E-value=0.062 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=20.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|+.|+|.+|+||||+.+.+-.
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999887655
No 180
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.63 E-value=0.058 Score=58.14 Aligned_cols=52 Identities=27% Similarity=0.245 Sum_probs=38.2
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~-------~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.+|.|.+..+++|.+.+...-. -+-...+-|-++|..|.|||++|++|.+.
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999988887742110 01123456779999999999999999983
No 181
>PRK08727 hypothetical protein; Validated
Probab=93.62 E-value=0.11 Score=51.27 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=28.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCC
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSE 245 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (725)
..+.|+|..|+|||+||+++.+. ..+......|+++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH
Confidence 45999999999999999999884 434444556666443
No 182
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.62 E-value=0.052 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.++||+|-.|+||||||+.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 345899999999999999999865
No 183
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.61 E-value=0.042 Score=46.85 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=18.3
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998773
No 184
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.60 E-value=0.08 Score=58.16 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++.+|+|.|..|.||||||+.+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999999999976
No 185
>PRK05439 pantothenate kinase; Provisional
Probab=93.58 E-value=0.095 Score=53.62 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.6
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....||||.|..|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998865
No 186
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.57 E-value=0.077 Score=56.70 Aligned_cols=54 Identities=26% Similarity=0.245 Sum_probs=39.5
Q ss_pred ccCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~-------~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.-.++.|.+..+++|.+.+...-. .+-...+-|-++|..|.|||+||+++.+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4455799999999888877642100 01234567889999999999999999873
No 187
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.52 E-value=0.058 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++++|+++|..|+|||||.+.+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999999876
No 188
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.49 E-value=0.058 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|++|+|+.|.|||||...+-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999998876
No 189
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.48 E-value=0.2 Score=52.93 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=48.8
Q ss_pred ccccchhhHHHHHHHHhcC--------CCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc---cceeeeecCC-C
Q 036753 179 EIFGRPKEKKELVDRLLCE--------GSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF---DERIWVCVSE-P 246 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~-~ 246 (725)
.++|.+..++.+...+... .........-|-++|..|+||||||+.+-.. ....| |..-|...+. .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCccc
Confidence 4899999999988887531 0000112367889999999999999988763 32222 3332332211 1
Q ss_pred ccHHHHHHHHHHHh
Q 036753 247 FDEFRIARAVIEAL 260 (725)
Q Consensus 247 ~~~~~l~~~i~~~l 260 (725)
.+...+.+++.+..
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 25566666665554
No 190
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.47 E-value=0.04 Score=47.78 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=18.0
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNNDDVKKHFD 236 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~ 236 (725)
|-|+|..|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999987 4555663
No 191
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.46 E-value=0.15 Score=49.34 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....|+|+|.+|+|||||.+.+.+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 5678999999999999999998875
No 192
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.059 Score=49.03 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 036753 207 IISLVGMGGIGKTTLAQFAY 226 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~ 226 (725)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999875
No 193
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.38 E-value=0.12 Score=47.17 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=30.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcch
Q 036753 185 KEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNND 229 (725)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 229 (725)
+..+++.+.|. + +++.++|..|+||+||.+.+..+.
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 56788888883 3 789999999999999999998863
No 194
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.35 E-value=0.072 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHh
Q 036753 205 PCIISLVGMGGIGKTTLAQFAY 226 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~ 226 (725)
-.+++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999875
No 195
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.34 E-value=0.11 Score=56.85 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=39.3
Q ss_pred ccCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~-------~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.-++|.|.+..+++|.+.+...-. .+-...+-|-++|.+|.|||++|+++++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 3445789999999998887642110 01123455789999999999999999984
No 196
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.33 E-value=0.057 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.+|+|+|..|+||||||+.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4468999999999999999999873
No 197
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.32 E-value=0.12 Score=49.41 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCcccccCCCCCceeEeecchhHHHHHHHhhcc
Q 036753 332 IGEEYFNILASRSFFQDFDKGDDGEIYKCKMHDIVHDFAQYLCRN 376 (725)
Q Consensus 332 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~dla~~i~~~ 376 (725)
+-.+|..+--+-.++........|+=.+|-|.-++|++.+++..+
T Consensus 88 i~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~ 132 (255)
T COG3640 88 LPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILN 132 (255)
T ss_pred hhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcc
Confidence 333444333333344444444445556799999999999998776
No 198
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.017 Score=53.65 Aligned_cols=77 Identities=23% Similarity=0.186 Sum_probs=55.0
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCccccccc-CccccceeEEcCCCCCCc--CCCCCCccccceeecccccCceE
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFM-SLTNLRDLSLFWWSNCEH--LPPLGKLKSLESLLIYGMQSVKR 713 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~-~l~~L~~L~L~~c~~~~~--lp~l~~lp~L~~L~L~~~~~l~~ 713 (725)
...+-++.+..++.++.|.+.+|.-..+.. .+-++ -.++|+.|+|++|+.+++ +-.+..|++|+.|.|++.+.+..
T Consensus 113 I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 113 IMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 445567777888888888888886544211 22233 468999999999987764 44488899999999998876654
Q ss_pred e
Q 036753 714 V 714 (725)
Q Consensus 714 i 714 (725)
.
T Consensus 192 ~ 192 (221)
T KOG3864|consen 192 L 192 (221)
T ss_pred h
Confidence 3
No 199
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.31 E-value=0.054 Score=49.46 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|.|+|..|+||||+|+.+.+
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 467899999999999998876
No 200
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.30 E-value=0.094 Score=48.77 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=33.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 180 IFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 180 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+||....+.++++.+..-.. .+..|+ |+|-.|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~~pVl-I~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SDLPVL-ITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---STS-EE-EECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CCCCEE-EEcCCCCcHHHHHHHHHHh
Confidence 57888899999888876432 234554 9999999999999999984
No 201
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.30 E-value=0.063 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+|.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37889999999999999999763
No 202
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.30 E-value=0.13 Score=48.80 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=32.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-++|+|-+..+..+.-.... ..=|-++|..|+|||+||+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 35789998888887766653 24577999999999999998864
No 203
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.28 E-value=0.1 Score=54.60 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999998875
No 204
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.28 E-value=0.098 Score=57.96 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|-+..++.+...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999886432 345677899999999999998876
No 205
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.26 E-value=0.13 Score=52.88 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=33.7
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHH
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARA 255 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 255 (725)
.+++-+.|.||+||||+|-+.-- ........++-|++....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47889999999999999988433 33444455666766666555555443
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.21 E-value=0.13 Score=51.04 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=37.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhcc----ccceeeeecCCCccHHHHHHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKH----FDERIWVCVSEPFDEFRIARA 255 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~~ 255 (725)
.-.++.|+|.+|+||||||.++.-....... -..++|++-...|+..++.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~ 73 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQI 73 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHH
Confidence 5579999999999999999998643222221 357889988887776555443
No 207
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.19 E-value=0.064 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|-+.|+.|+||||+|+.+.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998866
No 208
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.18 E-value=0.11 Score=57.93 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.+..++.+...+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999886432 345678999999999999998865
No 209
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.18 E-value=0.055 Score=51.32 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 210
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.18 E-value=0.071 Score=50.92 Aligned_cols=22 Identities=41% Similarity=0.440 Sum_probs=19.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHh
Q 036753 205 PCIISLVGMGGIGKTTLAQFAY 226 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~ 226 (725)
..+|||+|+.|+||||.|+..-
T Consensus 2 ~~iIglTG~igsGKStva~~~~ 23 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILA 23 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHH
Confidence 4689999999999999998654
No 211
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.13 E-value=0.095 Score=62.19 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.++||+.++++++..|.... -.-+-+||.+|+|||++|+.+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH
Confidence 359999999999999996542 22234799999999999998876
No 212
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.13 E-value=0.065 Score=49.12 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=18.4
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|.++|+.|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999876
No 213
>PRK13949 shikimate kinase; Provisional
Probab=93.08 E-value=0.064 Score=50.06 Aligned_cols=21 Identities=48% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-|.|+|+.|.||||+|+.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998876
No 214
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.08 E-value=0.071 Score=53.76 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=23.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNNDDVKKHF 235 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 235 (725)
++|+|+|.+|+|||||+..+.. ..++..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC
Confidence 5899999999999999999987 455544
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.07 E-value=0.25 Score=47.31 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=35.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecC-CCccHHHHHHHHHHHhcCC
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVS-EPFDEFRIARAVIEALKSG 263 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~l~~~i~~~l~~~ 263 (725)
.+||.+||..|+||||.+-++... .+..=..++.++.. ......+=++...+.++-+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 479999999999999888777763 33333345566542 2234444556666665543
No 216
>PRK13947 shikimate kinase; Provisional
Probab=93.05 E-value=0.065 Score=50.17 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-|.|+|+.|+||||+|+.+-+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999998876
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.04 E-value=0.18 Score=45.33 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=28.7
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhcccccee-eeecCCCccHHHHHHH
Q 036753 208 ISLVGMGGIGKTTLAQFAYNNDDVKKHFDERI-WVCVSEPFDEFRIARA 255 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~l~~~ 255 (725)
|-++|..|+|||+||+.+.. .. +... -+.+++..+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceee
Confidence 56899999999999998887 22 3222 3566776666665543
No 218
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.93 E-value=0.067 Score=48.79 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||.|+|..|.||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 219
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.92 E-value=0.088 Score=47.12 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999999874
No 220
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.90 E-value=0.07 Score=47.82 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|.|+|..|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999886
No 221
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=0.12 Score=57.68 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||.+..++.|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999996432 346788999999999999998755
No 222
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.85 E-value=0.12 Score=55.74 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||-+..+..|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 469999999998888886432 234678999999999999999876
No 223
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.84 E-value=0.086 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+.|.|+|+.|.||||+|+.+-+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34689999999999999999876
No 224
>PLN02348 phosphoribulokinase
Probab=92.84 E-value=0.092 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+...+|||.|-.|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999999998887
No 225
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.79 E-value=0.082 Score=45.91 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHhcch
Q 036753 208 ISLVGMGGIGKTTLAQFAYNND 229 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~~ 229 (725)
|.|+|..|+|||||.+.+.+.+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998753
No 226
>PRK13975 thymidylate kinase; Provisional
Probab=92.77 E-value=0.082 Score=50.77 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999887
No 227
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.77 E-value=0.19 Score=49.43 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=35.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIA 253 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 253 (725)
.-.++-|+|.+|.||||+|.++... ....-..++|++.. .++...+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH
Confidence 5679999999999999999998763 33344667898876 56655543
No 228
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.74 E-value=0.19 Score=43.56 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhcCCC-CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLCEGS-KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|-.-.++.|++.+...-. ......-|++.+|..|+|||.+|+.+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 478877777777777754211 1345778999999999999998777755
No 229
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.72 E-value=0.087 Score=52.10 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.8
Q ss_pred EEecCCCcHHHHHHHHhcc
Q 036753 210 LVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 210 i~G~gGiGKTtLa~~v~~~ 228 (725)
|+|++|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999999884
No 230
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.71 E-value=0.093 Score=54.00 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 202 QKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 202 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++.+||.+.|-||+||||.|-.+--
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHH
Confidence 45789999999999999998766544
No 231
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.71 E-value=0.4 Score=48.36 Aligned_cols=74 Identities=22% Similarity=0.170 Sum_probs=53.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcccc------ceeeeecCCCccHHHHHHHHHH
Q 036753 185 KEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFD------ERIWVCVSEPFDEFRIARAVIE 258 (725)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~------~~~wv~vs~~~~~~~l~~~i~~ 258 (725)
+..+++.++|.... .....-+.|||-.|.||||+++......-. .++ .++.|.....++...+...|+.
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~--~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPP--QSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCC--CCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 34556666665543 345666889999999999999988764221 121 3445666778999999999999
Q ss_pred HhcCC
Q 036753 259 ALKSG 263 (725)
Q Consensus 259 ~l~~~ 263 (725)
+++.+
T Consensus 119 ~lgaP 123 (302)
T PF05621_consen 119 ALGAP 123 (302)
T ss_pred HhCcc
Confidence 99987
No 232
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.67 E-value=0.1 Score=48.03 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|+|..|+|||||++.+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 233
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.21 Score=48.05 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=39.8
Q ss_pred cccCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 174 SIDVSEIFGRPKEKKELVDRLLCEGS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 174 ~~~~~~~vG~~~~~~~l~~~L~~~~~-------~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+...++=|.|-.+.+|.+.....-- -+-+..+=|-.+|.+|.|||.||++|.|+
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 34455788888888888776643211 12335566778999999999999999996
No 234
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.64 E-value=0.11 Score=47.33 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++..||-..|..|.||||+|++++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 235
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.62 E-value=0.1 Score=45.11 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 236
>PRK13695 putative NTPase; Provisional
Probab=92.62 E-value=0.1 Score=48.96 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 237
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=92.62 E-value=0.1 Score=52.10 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=37.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccc-eeeeecCCCcc-HHHHHHHHHH
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDE-RIWVCVSEPFD-EFRIARAVIE 258 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~l~~~i~~ 258 (725)
=.-++|+|-.|.||||||+.+++ .++.+|+. ++++-+.+... +.++.+++.+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 35689999999999999999999 46556644 55667777653 4555555543
No 238
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.61 E-value=0.12 Score=59.80 Aligned_cols=43 Identities=30% Similarity=0.328 Sum_probs=35.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++||+.+++++++.|.... ... +-++|..|+|||++|+.+..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~-----~~n-~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR-----KNN-PLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC-----CCC-eEEECCCCCCHHHHHHHHHH
Confidence 59999999999999997642 122 24799999999999999986
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.60 E-value=0.12 Score=47.67 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=28.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPF 247 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 247 (725)
++.|+|.+|.||||+|+.+... ....-..++|+.....+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 4679999999999999999773 33333456677665543
No 240
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.58 E-value=0.12 Score=58.13 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=41.8
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...++++|-+..++++..++..... ....-+++.|+|..|+||||+++.+...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456799999999999999875432 1223468999999999999999999873
No 241
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.54 E-value=0.24 Score=48.45 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=32.1
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCcc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFD 248 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (725)
..-.++-|.|.+|+||||+|.++... ....=..++|++....++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35689999999999999999998763 323334567887655554
No 242
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.53 E-value=0.23 Score=48.72 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 186 EKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...++++.+.... ++..+|||.|.+|+||+||...+-.
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHH
Confidence 5566777776543 3678999999999999999988876
No 243
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.18 Score=51.39 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=40.3
Q ss_pred cccCCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 174 SIDVSEIFGRPKEKKELVDRLLCEGSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 174 ~~~~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.++.+++=|.++.+++|.+.....--+ +-+..+=|-.||.+|.|||-||++|.|.
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 344556788898888887776432110 2345677789999999999999999985
No 244
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.47 E-value=0.12 Score=47.70 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.++.|.|..|+||+||+++++++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999985
No 245
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.46 E-value=0.094 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.++.|+|..|.|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 246
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.46 E-value=0.075 Score=49.31 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.7
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|.|+|..|+||||+|+.+-+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998876
No 247
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.45 E-value=0.079 Score=28.24 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=5.3
Q ss_pred cccEEEeecCCCcccc
Q 036753 482 HLKYLNLKGQKKIENL 497 (725)
Q Consensus 482 ~Lr~L~L~~~~~i~~l 497 (725)
+|+.|+|++|+ ++.+
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 34444444444 4433
No 248
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.44 E-value=0.9 Score=44.37 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=30.2
Q ss_pred ccccc-hhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 179 EIFGR-PKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 179 ~~vG~-~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-++|- ....-.....+.... +.....+-|+|..|+|||.|.+++++.
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 35675 333334444454442 224456789999999999999999994
No 249
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.40 E-value=0.084 Score=53.82 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=18.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.|+|+|-||+||||+|..+-.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998877765
No 250
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=92.40 E-value=0.72 Score=45.57 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=28.0
Q ss_pred CCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccc
Q 036753 202 QKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDE 237 (725)
Q Consensus 202 ~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~ 237 (725)
....-||||-|-.|+||+|+|+.+-. ..+..|+.
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~--ll~~~~~~ 112 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQA--LLSRWPES 112 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHH--HHhhCCCC
Confidence 45788999999999999999998876 45566655
No 251
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.36 E-value=0.1 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.++|+||-.|+||||||+.+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc
Confidence 456899999999999999999986
No 252
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.36 E-value=0.095 Score=51.27 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-|.|+|.+|+|||||+.....+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 45789999999999999998875
No 253
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.35 E-value=0.12 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|.+|+||||+|+.+..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 254
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.34 E-value=0.26 Score=47.24 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+|.|.|.-|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 255
>PRK14530 adenylate kinase; Provisional
Probab=92.33 E-value=0.096 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.|.|+|+.|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998865
No 256
>PLN02796 D-glycerate 3-kinase
Probab=92.33 E-value=0.11 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..-+|||.|..|+||||||+.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999999886
No 257
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.32 E-value=0.095 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.++|.+|+|||||++.+..+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999865
No 258
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.30 E-value=0.24 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=23.2
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+..+|.|+|..|.|||||+..+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999998887
No 259
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.30 E-value=0.093 Score=53.40 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|+|-||+||||+|-.+-.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999998877654
No 260
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.26 E-value=0.16 Score=57.31 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||.+..++.|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHH
Confidence 479999999999999987532 245788999999999999998765
No 261
>PRK05642 DNA replication initiation factor; Validated
Probab=92.24 E-value=0.33 Score=48.06 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=26.7
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeec
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCV 243 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (725)
...+-|||-.|+|||.||+++.+. ....-..++|++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeH
Confidence 367889999999999999999873 3322234556654
No 262
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.24 E-value=0.11 Score=46.20 Aligned_cols=23 Identities=48% Similarity=0.497 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+-|-++|..|+|||||+|.+-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 45778999999999999999775
No 263
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.23 E-value=0.15 Score=54.31 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=25.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDE 237 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~ 237 (725)
..-||+|+|..|.|||||+..+.. +.+..+..
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~--~l~~~~~V 35 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR--RLSERFSV 35 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH--HHhhCceE
Confidence 456999999999999999999988 45544433
No 264
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.20 E-value=0.19 Score=50.82 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=21.9
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...++|.++|.+|+||||++..+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999998888875
No 265
>PRK13946 shikimate kinase; Provisional
Probab=92.18 E-value=0.1 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+.|.++|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 266
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.17 E-value=0.1 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|+|-||+||||+|-.+-.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999998877654
No 267
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.13 E-value=0.17 Score=54.40 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|-+..++.+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHH
Confidence 468998888888888885431 235577999999999999988765
No 268
>PRK13948 shikimate kinase; Provisional
Probab=92.11 E-value=0.12 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....|.++||.|+||||+++.+-+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457888999999999999998876
No 269
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.08 E-value=0.31 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...||.++|..|+||||+|..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 270
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.03 E-value=0.11 Score=43.09 Aligned_cols=21 Identities=48% Similarity=0.692 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998876
No 271
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.03 E-value=0.11 Score=50.72 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=18.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|.|-||+||||++..+-.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998876654
No 272
>PRK04182 cytidylate kinase; Provisional
Probab=92.03 E-value=0.11 Score=48.97 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999976
No 273
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.02 E-value=0.3 Score=49.30 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=40.8
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHHHHH
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARAVIE 258 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 258 (725)
+.-+++.|+|-+|+|||++|.+.-. ...+....++||+..+. ...+.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 4678999999999999999988876 35566889999988875 5555555544
No 274
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.98 E-value=0.3 Score=55.41 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=48.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhc-cccceeeeecCCCccHHHHHHHH
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKK-HFDERIWVCVSEPFDEFRIARAV 256 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~l~~~i 256 (725)
++++|.++.++.+...+... .. +-++|..|+||||+|+.+.+ .+.. .|...+++.-+. .+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~-------~~-~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~-~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK-------RN-VLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPE-DPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC-------CC-EEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCC-CCchHHHHHH
Confidence 46899998888777777532 23 44899999999999999987 3432 333344333222 2455667777
Q ss_pred HHHhcCC
Q 036753 257 IEALKSG 263 (725)
Q Consensus 257 ~~~l~~~ 263 (725)
+.+++..
T Consensus 87 ~~~~g~~ 93 (608)
T TIGR00764 87 PAGEGRE 93 (608)
T ss_pred HHhhchH
Confidence 7666554
No 275
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.97 E-value=0.12 Score=48.30 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|.|.|..|+||||+|+.+-+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 276
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.94 E-value=0.1 Score=49.30 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|.|+.|+||||+|+.+-+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988754
No 277
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.92 E-value=0.3 Score=48.06 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=36.3
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcchhhhccc------cceeeeecCCCccHHHHHH
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF------DERIWVCVSEPFDEFRIAR 254 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~l~~ 254 (725)
..-.++.|+|.+|+||||||..+... ....- ..++|+.....++...+.+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 35679999999999999999988653 22223 4568888877777655543
No 278
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.91 E-value=0.28 Score=50.03 Aligned_cols=49 Identities=24% Similarity=0.227 Sum_probs=29.8
Q ss_pred ccccchhhHHHHHHHHh---cCC------CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLL---CEG------SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~---~~~------~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|.++-+++|.++.. ... -.......-|-++|.+|.||||+|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47887776666544322 110 00001122467999999999999987765
No 279
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.90 E-value=0.23 Score=51.46 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 188 KELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 188 ~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++++.+... .+...+|+|.|.+|+|||||+..+..
T Consensus 43 ~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 43 QELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4555555432 23678999999999999999998766
No 280
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.88 E-value=0.22 Score=52.90 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999886432 345778999999999999988865
No 281
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.87 E-value=0.21 Score=52.01 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=35.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-..+||-+..+..++-.+... ...-|.|.|..|.|||||++.+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346899999988877666543 233466999999999999999865
No 282
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.86 E-value=0.19 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....+|+|+|.+|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999988763
No 283
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.83 E-value=0.19 Score=56.03 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||-+.-++.|.+.+..+. -...+-++|..|+||||+|+.+-+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999996542 345678999999999999988865
No 284
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.80 E-value=0.24 Score=47.24 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=34.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.++||-++.++.+.-.-. +++..-+-|-||+|+||||-+..+..
T Consensus 26 l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 3479999998888765553 23677788999999999997665544
No 285
>PRK06761 hypothetical protein; Provisional
Probab=91.79 E-value=0.2 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++|.|.|..|+||||+|+.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999984
No 286
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.77 E-value=0.11 Score=46.68 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=31.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHHHHHHhcCC
Q 036753 207 IISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARAVIEALKSG 263 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 263 (725)
+|.|-|.+|.||||+|+.+-++--.+ | .+.-.+.++|+.+.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999887742221 1 13446677777766654
No 287
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.76 E-value=0.13 Score=50.06 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999873
No 288
>PRK15453 phosphoribulokinase; Provisional
Probab=91.76 E-value=0.15 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|.|-.|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998864
No 289
>PRK13768 GTPase; Provisional
Probab=91.76 E-value=0.13 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=19.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++.|+|.||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 35889999999999999987765
No 290
>PRK12377 putative replication protein; Provisional
Probab=91.75 E-value=0.22 Score=49.46 Aligned_cols=38 Identities=26% Similarity=0.161 Sum_probs=28.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecC
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVS 244 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (725)
...+.++|..|+|||+||.++.+. +......++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH
Confidence 457889999999999999999994 44444445666553
No 291
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.74 E-value=0.13 Score=52.31 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|.|-||+||||+|-.+-.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5788999999999999877765
No 292
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.73 E-value=0.2 Score=57.87 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++|||-+.-++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999998886432 2455679999999999999998863
No 293
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.73 E-value=0.11 Score=47.11 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|++.|.+|+||||++..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998875
No 294
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=91.68 E-value=0.17 Score=49.50 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=27.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
-.+.|+|..|.|||||...+.. ...+.|++..++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEE
Confidence 3567999999999999999987 367788665554
No 295
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=91.67 E-value=0.17 Score=48.38 Aligned_cols=54 Identities=30% Similarity=0.269 Sum_probs=34.8
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 180 IFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 180 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
+..+..+....++.|. ...++.+.|.+|.|||.||-+.--+.-..+.|+..+++
T Consensus 2 I~p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp ----SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred ccCCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3445667777788886 24588999999999999998777654345777777665
No 296
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.65 E-value=0.13 Score=48.18 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.|.|+|+.|+||||+|+.+-+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999998876
No 297
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.64 E-value=0.11 Score=27.64 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=8.8
Q ss_pred CCCcEeecCCCccccccc
Q 036753 505 YNLECLNVDDCQNLRELP 522 (725)
Q Consensus 505 ~~L~~L~l~~~~~l~~lp 522 (725)
++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 357777777776 66555
No 298
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.64 E-value=0.14 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
. .+++|+|..|.|||||++.+..-
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCC
Confidence 6 89999999999999999999873
No 299
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.63 E-value=0.13 Score=48.32 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.|-|.|.+|.||||+|+.+-+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999874
No 300
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.60 E-value=0.19 Score=48.97 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=38.0
Q ss_pred cccCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 174 SIDVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 174 ~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+..++++|.+.+++.|++=-..-- .+....-+-+||..|.|||+|++++.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 3445689999999988875432211 1124455668999999999999999873
No 301
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.60 E-value=0.15 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...+|+|+|.+|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988763
No 302
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.59 E-value=0.13 Score=47.88 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=23.1
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhc-cccceeeee
Q 036753 208 ISLVGMGGIGKTTLAQFAYNNDDVKK-HFDERIWVC 242 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~ 242 (725)
|-|.|..|+|||||++.+.+ ..++ .+...-|.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~--~l~~~~~~v~Gf~t 35 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE--ELKKKGLPVGGFYT 35 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH--HHHHTCGGEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHH--HhhccCCccceEEe
Confidence 57899999999999999997 3432 344444443
No 303
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.58 E-value=0.19 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..++|.|+|..|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 6788999999999999999999763
No 304
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.57 E-value=0.28 Score=55.53 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=53.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHHHH
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARAVI 257 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 257 (725)
++++|.++.++.+...+... +-+-++|..|+||||+|+.+.+. --..+|+..+|..-+. -+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np~-~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNPE-DPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCCC-cchHHHHHHHH
Confidence 46899988888887766532 25788999999999999998863 1234467778876543 35667777776
Q ss_pred HHhcCC
Q 036753 258 EALKSG 263 (725)
Q Consensus 258 ~~l~~~ 263 (725)
.+.+..
T Consensus 101 ~~~G~~ 106 (637)
T PRK13765 101 AGKGKQ 106 (637)
T ss_pred HhcCHH
Confidence 655443
No 305
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.56 E-value=0.13 Score=55.09 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.4
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-++.|+|+|..|.||||||+++.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999998875
No 306
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.55 E-value=0.17 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..-||||.|..|.|||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998854
No 307
>PRK06620 hypothetical protein; Validated
Probab=91.54 E-value=0.14 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..+-|||..|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 56889999999999999988764
No 308
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.54 E-value=0.15 Score=48.15 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999986
No 309
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.52 E-value=0.22 Score=55.19 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||-+.-++.+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999996532 245678999999999999988765
No 310
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.50 E-value=0.14 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 311
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.49 E-value=0.17 Score=52.33 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...||+++|..|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999998876
No 312
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.48 E-value=0.15 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|+|||||.+.+..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456999999999999999999987
No 313
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.47 E-value=0.38 Score=58.29 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCC-CccHHHHHHHHHHHh
Q 036753 189 ELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSE-PFDEFRIARAVIEAL 260 (725)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l 260 (725)
+|.+.|... ...+++-|.|.+|.||||++..... .++.++|+++.. +-+...+...++..+
T Consensus 21 rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 21 RLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred HHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 566666432 2678999999999999999988764 234688998863 334455555555544
No 314
>PRK09087 hypothetical protein; Validated
Probab=91.47 E-value=0.13 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-+.+.|||..|+|||+|++...+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999988764
No 315
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.46 E-value=0.14 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 316
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.42 E-value=0.15 Score=47.55 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.|+|.+|+|||||++.+.++
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988774
No 317
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.42 E-value=0.15 Score=47.87 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||++.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 345899999999999999999876
No 318
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.40 E-value=0.14 Score=52.14 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|+|-||+||||+|..+-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999876654
No 319
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.39 E-value=0.3 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=18.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|-+.|-||+||||+|-+.--
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 5788999999999999966644
No 320
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.37 E-value=0.15 Score=49.95 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEEec-CCCcHHHHHHHHhc
Q 036753 206 CIISLVGM-GGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~-gGiGKTtLa~~v~~ 227 (725)
++|+|+|. ||+||||++-.+-.
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~ 24 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAW 24 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHH
Confidence 68999997 89999999988765
No 321
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.34 E-value=0.24 Score=55.72 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHh
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAY 226 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~ 226 (725)
+++||-+.-++.|.+++..+. -...+-++|..|+||||+|+.+-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHH
Confidence 468998888888888886542 34677899999999999999883
No 322
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.29 E-value=0.25 Score=55.87 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||-+..++.+...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999998886432 235567999999999999998866
No 323
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.28 E-value=0.15 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 324
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.28 E-value=0.16 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999863
No 325
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.26 E-value=0.16 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=..|+|+|..|+|||||-+.|.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999875
No 326
>PRK01184 hypothetical protein; Provisional
Probab=91.25 E-value=0.16 Score=48.16 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=16.7
Q ss_pred EEEEEEecCCCcHHHHHH
Q 036753 206 CIISLVGMGGIGKTTLAQ 223 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~ 223 (725)
.+|+|+|..|+||||+|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 489999999999999987
No 327
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.25 E-value=0.19 Score=47.56 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=26.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
.++|-|+|..|+|||||++.+.. .....|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceee
Confidence 46888999999999999999987 344566433333
No 328
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.21 E-value=0.62 Score=50.31 Aligned_cols=24 Identities=46% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.++|..|+||||.|..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999998876
No 329
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.20 E-value=0.15 Score=47.29 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=16.6
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|+|.|-.|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998876
No 330
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.18 E-value=0.13 Score=52.05 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|||.|-.|+|||||++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 331
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=91.18 E-value=0.34 Score=47.65 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=27.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFD 248 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (725)
+.|+|+|-|||||+|.+..+-. .....-..++-|-...+.|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEecccCCCc
Confidence 4699999999999999988765 3334434455554444444
No 332
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.14 E-value=0.16 Score=59.51 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=39.7
Q ss_pred cccCCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 174 SIDVSEIFGRPKEKKELVDRLLCEGSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 174 ~~~~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+.-+++.|.+..+++|.+++...-.+ +-...+-|-++|..|+||||||+++.+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 344557899999999988877432100 1123456789999999999999999873
No 333
>PLN02200 adenylate kinase family protein
Probab=91.14 E-value=0.18 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999997754
No 334
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.12 E-value=0.2 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|.|.|..|.||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 335
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.12 E-value=0.16 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999874
No 336
>PRK07429 phosphoribulokinase; Provisional
Probab=91.10 E-value=0.21 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...-+|||.|..|+||||+|+.+..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999998876
No 337
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.09 E-value=0.29 Score=52.22 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.+..++.+...+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999996432 346888999999999999998865
No 338
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.07 E-value=0.15 Score=51.91 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|+|-||+||||+|-.+-.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998866544
No 339
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.06 E-value=0.26 Score=53.81 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||-+.-++.+...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHH
Confidence 579999888888887775431 235788999999999999988754
No 340
>PRK08356 hypothetical protein; Provisional
Probab=91.04 E-value=0.21 Score=47.91 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.2
Q ss_pred CEEEEEEecCCCcHHHHHHHH
Q 036753 205 PCIISLVGMGGIGKTTLAQFA 225 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v 225 (725)
..+|+|.|+.|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999988
No 341
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=91.04 E-value=0.17 Score=48.60 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.4
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 036753 207 IISLVGMGGIGKTTLAQFAY 226 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~ 226 (725)
+|+|+||.|+||+|.|+.+-
T Consensus 2 iI~i~G~~gsGKstva~~~~ 21 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFII 21 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 79999999999999998774
No 342
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.02 E-value=0.27 Score=54.74 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||-+.-++.+..++..+. -...+-++|..|+||||+|+.+-+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999886532 235667999999999999998854
No 343
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.01 E-value=0.27 Score=49.02 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 187 KKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.+++..+.... ++..||||.|.+|+||+||.-.+-.
T Consensus 37 a~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 37 ARELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred HHHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHH
Confidence 345666665543 4789999999999999999977765
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.00 E-value=2.8 Score=47.92 Aligned_cols=69 Identities=26% Similarity=0.312 Sum_probs=48.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCC-ccHHHHHHHHHHHhcC
Q 036753 186 EKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEP-FDEFRIARAVIEALKS 262 (725)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~ 262 (725)
...++++.|... .+.+++-|...+|.|||||+-.... ....=..++|.+.+.. -|+..+.+.++..++.
T Consensus 23 ~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 23 VRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred ccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 345677777643 3789999999999999999977753 1122345789987653 4677777777776663
No 345
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.99 E-value=0.48 Score=45.34 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..|.|.|..|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999863
No 346
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.97 E-value=0.17 Score=49.30 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999986
No 347
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.95 E-value=0.25 Score=47.50 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=24.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 207 IISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
+|.|+|..|.||||+++.+.. .+......++++
T Consensus 3 lilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t 35 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT 35 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE
Confidence 688999999999999998776 333344444443
No 348
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.94 E-value=0.17 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 349
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.94 E-value=0.28 Score=53.04 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=19.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-+++.++|.+|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999998887755
No 350
>PRK08116 hypothetical protein; Validated
Probab=90.93 E-value=0.21 Score=50.51 Aligned_cols=47 Identities=23% Similarity=0.144 Sum_probs=31.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHHHHHHh
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARAVIEAL 260 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 260 (725)
.-+-++|-.|+|||.||.++++. +...-..+++++ ..+++..|....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHH
Confidence 35789999999999999999994 443333345554 444555554443
No 351
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.93 E-value=0.17 Score=49.19 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
.=.+++|+|..|.|||||++.+.... ......+++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 59 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLF 59 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 34689999999999999999998732 223455554
No 352
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=90.91 E-value=0.18 Score=45.83 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcch
Q 036753 207 IISLVGMGGIGKTTLAQFAYNND 229 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~~ 229 (725)
-|+++|..|+|||||++.+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988753
No 353
>PRK14527 adenylate kinase; Provisional
Probab=90.90 E-value=0.19 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|+|.+|.||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 354
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=90.88 E-value=0.17 Score=47.23 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+..-|+|+|..|+|||||.+.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3455899999999999999999874
No 355
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=90.88 E-value=0.17 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3458999999999999999999873
No 356
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=90.87 E-value=0.18 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|+|.|-||+||||+|..+-.
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~ 24 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAA 24 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999988766
No 357
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.85 E-value=0.18 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 358
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.84 E-value=0.18 Score=49.21 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=25.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
=.+++|+|..|.|||||++.+..- .......+++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl---~~~~~G~i~~ 61 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA---LTPSRGQVRI 61 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 358999999999999999999873 2234555554
No 359
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=90.83 E-value=0.25 Score=51.50 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=36.6
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+-+.+||-++.+..++..+... .+.-|-|.|-.|.||||+|+.+++
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4567999998888877776543 444455999999999999999987
No 360
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.82 E-value=0.22 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..++|-|+|..|+|||||++.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999873
No 361
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=90.81 E-value=0.28 Score=50.74 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-..|.++|+.|+||||+++.+..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 362
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=90.77 E-value=0.17 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|+|-||+||||+|-.+-.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~ 22 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSH 22 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999987765
No 363
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.76 E-value=0.28 Score=55.68 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||.+.-++.|..++..+. -...+-++|..|+||||+|+.+-+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999986432 345667999999999999986655
No 364
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.75 E-value=0.44 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.++|.+|+||||+|..+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998875
No 365
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.74 E-value=0.22 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..+|+++|..|+|||||++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998763
No 366
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.73 E-value=0.36 Score=45.83 Aligned_cols=23 Identities=35% Similarity=0.270 Sum_probs=20.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.++.|+|..|.|||||++.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 367
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=90.73 E-value=0.3 Score=53.99 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=46.4
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeee
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVC 242 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 242 (725)
..++++--..-+++|..||...-. +....+++-+.|.+|+||||.++.+.+. -.|+.+-|..
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 345677777888999999976432 2234579999999999999999998873 2577777863
No 368
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.72 E-value=0.53 Score=47.45 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=26.7
Q ss_pred EEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHH
Q 036753 208 ISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIA 253 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 253 (725)
|-++|..|+|||+||+.+.+ .... ...+++.+...+..+++
T Consensus 24 vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 45899999999999999975 2221 23345555555554444
No 369
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.70 E-value=0.36 Score=47.79 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=26.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVC 242 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 242 (725)
...+-++|-+|+|||+||.++.+. ....-..+++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 457789999999999999999984 333323445553
No 370
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=90.69 E-value=0.19 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 371
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.69 E-value=0.19 Score=46.53 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.++|.+|+|||||++.+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998774
No 372
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=90.67 E-value=0.19 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.+++|+|..|.|||||++.+..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999999987
No 373
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.67 E-value=0.28 Score=53.98 Aligned_cols=45 Identities=29% Similarity=0.284 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++||-+.-+..+...+..+. -..-+-++|..|+||||+|+.+.+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHH
Confidence 468999998888888775432 345778999999999999999976
No 374
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.64 E-value=0.16 Score=50.91 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.3
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|-++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999998876
No 375
>PLN02165 adenylate isopentenyltransferase
Probab=90.63 E-value=0.21 Score=51.38 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|.|+|+.|+||||||..+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 445899999999999999998765
No 376
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=90.61 E-value=0.39 Score=44.17 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcch
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNND 229 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~ 229 (725)
-..|+++|+.|+||+||.+.+..+.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4568899999999999999998753
No 377
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=90.60 E-value=0.19 Score=43.42 Aligned_cols=20 Identities=45% Similarity=0.801 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|.+.|.||+||||++..+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999877
No 378
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.57 E-value=0.2 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 379
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.57 E-value=0.19 Score=46.39 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.|+|-+|+|||||++.+.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988764
No 380
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.34 Score=52.71 Aligned_cols=55 Identities=27% Similarity=0.293 Sum_probs=42.1
Q ss_pred cccCCccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 174 SIDVSEIFGRPKEKKELVDRLLCEGSK------EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 174 ~~~~~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+.-.++=|.+....++.+++.+-... +-...+=|-++|.+|+|||.||+++.++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence 444567889999999999988763210 2234566779999999999999999884
No 381
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=90.53 E-value=0.2 Score=46.62 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=24.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
+.-||||-|+.-.||||||+... ..|....-|
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~------~~f~~~~lI 34 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLH------RFFPGCSLI 34 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHH------HHccCCeee
Confidence 45689999999999999998664 466655544
No 382
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=90.52 E-value=0.18 Score=44.54 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=19.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..=|-|.|-+|+||||||..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 34467999999999999998864
No 383
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.52 E-value=0.22 Score=45.17 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.|++|||-.|.|||||.+.+-.
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~ 54 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISG 54 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhc
Confidence 35999999999999999988865
No 384
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.50 E-value=0.2 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=21.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 385
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.50 E-value=0.18 Score=48.98 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=24.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 207 IISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
+++|+|..|.|||||++.+..- -......+++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 58 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL---TPPSSGTIRI 58 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC---CCCCccEEEE
Confidence 8999999999999999999873 1233455554
No 386
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.48 E-value=0.2 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 387
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.48 E-value=0.21 Score=46.10 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.++|.+|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 388
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.48 E-value=0.84 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...+-|+|..|+|||+||+++++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456789999999999999999984
No 389
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.48 E-value=0.21 Score=47.26 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
.-.|+.|+|..|.|||||.+.+-.= ...=+..+|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i 61 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITV 61 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEE
Confidence 3468999999999999999988653 2233455665
No 390
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.47 E-value=0.47 Score=49.60 Aligned_cols=70 Identities=19% Similarity=0.061 Sum_probs=47.3
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcc-ccc-eeeeecCCCc-cHHHHHHHHHHHhcC
Q 036753 186 EKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKH-FDE-RIWVCVSEPF-DEFRIARAVIEALKS 262 (725)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~vs~~~-~~~~l~~~i~~~l~~ 262 (725)
-..++++.+..-. .-.-+.|+|-.|+|||||++.+.+. +... =+. ++|+.+.+.. .+.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3445777776421 2345689999999999999998873 4332 244 4677777654 577788877665544
No 391
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.46 E-value=0.32 Score=54.89 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||-+..++.+...+..+. -...+-++|..|+||||+|+.+-+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHH
Confidence 468998888888888885431 345688999999999999977654
No 392
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.45 E-value=0.17 Score=50.15 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||+|.|-.|+||||+|+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998765
No 393
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.44 E-value=0.19 Score=50.94 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=17.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|.|-||+||||+|-.+-.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 588889999999998876654
No 394
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.42 E-value=0.2 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.+++|+|..|.|||||.+.+..-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999873
No 395
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=90.41 E-value=0.23 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHh
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAY 226 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~ 226 (725)
...+|.|.|+.|+||||+|+.+-
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 45799999999999999999883
No 396
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.40 E-value=0.2 Score=49.90 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 397
>PRK14974 cell division protein FtsY; Provisional
Probab=90.39 E-value=0.25 Score=51.31 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.++|+.|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998877765
No 398
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.37 E-value=0.21 Score=48.30 Aligned_cols=24 Identities=46% Similarity=0.523 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 399
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.36 E-value=0.21 Score=45.18 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 400
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.34 E-value=0.21 Score=48.27 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.+++|+|..|.|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.32 E-value=0.23 Score=46.61 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++.++|++|.||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999998876
No 402
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=90.30 E-value=0.21 Score=45.95 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998764
No 403
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.30 E-value=0.21 Score=49.85 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 404
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=90.29 E-value=0.2 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.++||||-.|+||||||+.+-.
T Consensus 317 GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 405
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.29 E-value=0.51 Score=49.58 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=37.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...++|-+...+.+...+..+. -...+-|+|..|+||||+|..+.+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHH
Confidence 3469999999999999996542 345688999999999999987765
No 406
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.28 E-value=0.22 Score=48.83 Aligned_cols=34 Identities=32% Similarity=0.281 Sum_probs=25.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
-.+++|+|..|.|||||.+.+..- -......+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 59 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL---LKPTSGRATV 59 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 468999999999999999999873 2234455554
No 407
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=0.35 Score=54.25 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||-+.-++.|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999986431 345678999999999999998875
No 408
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.27 E-value=0.21 Score=49.62 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 409
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=90.25 E-value=0.2 Score=46.24 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999984
No 410
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=90.25 E-value=0.22 Score=45.40 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.++|..|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999875
No 411
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.23 E-value=0.22 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-|.|+|.+|+|||||++.+..+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45789999999999999988653
No 412
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=90.21 E-value=0.22 Score=48.87 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.+++|+|..|.|||||.+.+..-
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999873
No 413
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.20 E-value=0.41 Score=53.77 Aligned_cols=45 Identities=27% Similarity=0.326 Sum_probs=30.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+.|.+-.+.|.+..... ...-.+|-|+|+.|+||||+|+.+..
T Consensus 370 ~~f~rpeV~~iL~~~~~~r----~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPR----HKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred hhhcHHHHHHHHHHHhccc----cCCCeEEEEECCCCChHHHHHHHHHH
Confidence 4455555555444443322 23455889999999999999999987
No 414
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=90.19 E-value=0.22 Score=45.67 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHhcch
Q 036753 208 ISLVGMGGIGKTTLAQFAYNND 229 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~~ 229 (725)
|.|+|..|+|||||.+.+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.18 E-value=0.2 Score=52.45 Aligned_cols=24 Identities=50% Similarity=0.692 Sum_probs=19.2
Q ss_pred CCEEEEEEecCCCcHH-HHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKT-TLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKT-tLa~~v~~ 227 (725)
+-+||.+||..|+||| |||+....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999995 57765544
No 416
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.17 E-value=0.34 Score=54.64 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=37.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-++++|.+..++.+.+.+..+. -..-+-++|..|+||||+|+.+.+
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999886432 345678999999999999998865
No 417
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=90.16 E-value=0.22 Score=49.13 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.+++|+|..|.|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 418
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.14 E-value=0.23 Score=48.45 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 419
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=90.09 E-value=0.3 Score=54.56 Aligned_cols=44 Identities=30% Similarity=0.432 Sum_probs=35.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.+..++.+...+... ...-|-|+|..|+||||+|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999988876432 223456899999999999999986
No 420
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=90.09 E-value=0.23 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 421
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=90.09 E-value=0.23 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..|.|+|.+|+|||||++.+.++
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 44599999999999999998764
No 422
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=90.08 E-value=0.23 Score=45.49 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
No 423
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=90.07 E-value=0.23 Score=45.26 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998775
No 424
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.06 E-value=0.23 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 425
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=90.06 E-value=0.24 Score=48.62 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999999986
No 426
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=90.04 E-value=0.23 Score=44.59 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.|+|.+|+|||||.+.+.+.
T Consensus 3 v~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 689999999999999988764
No 427
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=4 Score=46.95 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=37.5
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLCEGS---KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|-+..++.|.+.+..... +.+..+.+.-.+|..|+|||-||+++..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 589999999998888864321 1334566778899999999999988755
No 428
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=90.02 E-value=0.31 Score=47.66 Aligned_cols=34 Identities=24% Similarity=0.122 Sum_probs=26.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
=.+++|+|..|.|||||++.+..- .......+++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 64 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL---LEPDAGFATV 64 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---cCCCCceEEE
Confidence 358999999999999999999863 2334555555
No 429
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.00 E-value=0.29 Score=54.41 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=37.1
Q ss_pred ccccCCccccchhhHHHHHHHHhc---CC---CCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 173 SSIDVSEIFGRPKEKKELVDRLLC---EG---SKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~l~~~L~~---~~---~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.+.-++++|.+..++++.+++.. .. ..+....+=+-++|.+|.|||+||+.+.+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 344456799998877766655431 10 001122344779999999999999999873
No 430
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=89.99 E-value=0.23 Score=47.70 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++|+|..|.|||||+++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999974
No 431
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=89.99 E-value=0.24 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 432
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=89.97 E-value=1.5 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|+|+|.+|+|||||.+.+.+.
T Consensus 205 kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999999874
No 433
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=89.95 E-value=0.24 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 434
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=89.95 E-value=0.23 Score=48.90 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||.+.+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 435
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=89.93 E-value=0.24 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999873
No 436
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.93 E-value=0.46 Score=51.92 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 437
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.91 E-value=0.71 Score=48.05 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccc----cceeeeecCCCccHHHHHHHHHHHh
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF----DERIWVCVSEPFDEFRIARAVIEAL 260 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~l~~~i~~~l 260 (725)
.-.++-|+|.+|+|||++|.++.-.......+ ...+||+....|+..++.+. ++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHc
Confidence 56789999999999999999886532221111 36889999898888777544 3443
No 438
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.91 E-value=0.24 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999873
No 439
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=89.90 E-value=0.44 Score=43.27 Aligned_cols=43 Identities=35% Similarity=0.441 Sum_probs=32.3
Q ss_pred EEecCCCcHHHHHHHHhcchhhhccccceeeeec-----CCCccHHHHHHHHHHHhc
Q 036753 210 LVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCV-----SEPFDEFRIARAVIEALK 261 (725)
Q Consensus 210 i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-----s~~~~~~~l~~~i~~~l~ 261 (725)
=++.-|+||||+|.++.+ .|.. |-+| +.+ ....+.+.+++.+.
T Consensus 4 PIAtiGCGKTTva~aL~~------LFg~--wgHvQnDnI~~k-~~~~f~~~~l~~L~ 51 (168)
T PF08303_consen 4 PIATIGCGKTTVALALSN------LFGE--WGHVQNDNITGK-RKPKFIKAVLELLA 51 (168)
T ss_pred eecCCCcCHHHHHHHHHH------HcCC--CCccccCCCCCC-CHHHHHHHHHHHHh
Confidence 357889999999987754 6765 7654 344 67788888898883
No 440
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=89.85 E-value=0.24 Score=48.91 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.+++|+|..|.|||||++.+..-
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999873
No 441
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=89.84 E-value=0.24 Score=45.59 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=18.1
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|-++||-|+||||+.+.+.+
T Consensus 5 IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHH
Confidence 56889999999999999976
No 442
>PRK00698 tmk thymidylate kinase; Validated
Probab=89.83 E-value=0.25 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+|.|.|.-|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 443
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=89.82 E-value=0.24 Score=45.46 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.|+|.+|+|||||++.+.++
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999888764
No 444
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.82 E-value=0.24 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3469999999999999999999873
No 445
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.81 E-value=0.24 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.80 E-value=0.26 Score=47.65 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+|+|+|..|+|||||...+..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999876
No 447
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.80 E-value=0.45 Score=49.68 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=30.7
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEe-cCCCcHHHHHHHHhc
Q 036753 180 IFGRPKEKKELVDRLLCEGSKEQKGPCIISLVG-MGGIGKTTLAQFAYN 227 (725)
Q Consensus 180 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G-~gGiGKTtLa~~v~~ 227 (725)
++......+++.+.|..-.......-++|+|+| -||+||||+|-.+-.
T Consensus 68 ~l~~P~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~ 116 (322)
T TIGR03815 68 VAVLPEAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALAL 116 (322)
T ss_pred eeeCCCCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHH
Confidence 333334455555555433211234578999996 799999999987765
No 448
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.77 E-value=1 Score=49.04 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=32.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccc-cc-eeeeecCCCccHHHHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHF-DE-RIWVCVSEPFDEFRIARAVIEALK 261 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~vs~~~~~~~l~~~i~~~l~ 261 (725)
..-+-|+|..|+|||+||+++.+. +.+.. .. ++|++ ..++..++...+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~------~~~f~~~~~~~~~ 180 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT------SEKFLNDLVDSMK 180 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHh
Confidence 345889999999999999999984 44433 32 34553 3445555555554
No 449
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=89.72 E-value=0.34 Score=50.34 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=34.2
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+-+.++|.+..++.+.-.+... +..-+-+.|..|.||||+|+.+-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~------~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDP------GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhcc------CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999888777544322 223377899999999999998854
No 450
>PRK10867 signal recognition particle protein; Provisional
Probab=89.71 E-value=0.92 Score=48.92 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=21.3
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....||.++|.+|+||||.|..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999998877765
No 451
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=89.70 E-value=0.25 Score=45.96 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|+|+|..|+|||||.+.+.+
T Consensus 3 v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999875
No 452
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=89.70 E-value=0.24 Score=49.08 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 45899999999999999999986
No 453
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=89.70 E-value=0.26 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.0
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.++|.+|+|||||++.+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999877653
No 454
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=89.68 E-value=0.24 Score=47.42 Aligned_cols=20 Identities=40% Similarity=0.385 Sum_probs=18.1
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|.|.|+.|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998865
No 455
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.68 E-value=0.24 Score=48.64 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=18.2
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 036753 208 ISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~ 227 (725)
|.|.|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998855
No 456
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=89.66 E-value=0.25 Score=50.13 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
||+|.|-||+||||+|-.+-.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~ 22 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSV 22 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 688999999999998877654
No 457
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.65 E-value=0.27 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|..|.|||||.+.+-.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 446899999999999999998865
No 458
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=89.64 E-value=1.2 Score=48.49 Aligned_cols=24 Identities=42% Similarity=0.336 Sum_probs=21.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..-+-|+|..|+|||+||+++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~ 164 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA 164 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 456789999999999999999984
No 459
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=89.64 E-value=0.29 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..|+|.|..|.|||||.+.+.+
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 460
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=89.63 E-value=0.29 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|+|..|+|||||+..+..
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~ 23 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILK 23 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 6899999999999999988876
No 461
>PRK06526 transposase; Provisional
Probab=89.63 E-value=0.19 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=20.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.-+-++|.+|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345789999999999999999873
No 462
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.63 E-value=0.26 Score=46.47 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999873
No 463
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.62 E-value=0.28 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.7
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.....++|||..|.|||.+|++|++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 464
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.62 E-value=0.27 Score=47.02 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999986
No 465
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=89.61 E-value=0.25 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||++.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999976
No 466
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.61 E-value=21 Score=37.95 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=40.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCc--cHHHHHHHHHHHhcCC
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPF--DEFRIARAVIEALKSG 263 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~l~~~ 263 (725)
...||-.||.-|.||||-|-.+.+ ..++ ....+-+.-...| ...+=++.+.+++..+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 578999999999999999988877 3444 4444444333433 4455577788887776
No 467
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=89.61 E-value=0.26 Score=48.52 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+++|+|..|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999987
No 468
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=89.60 E-value=0.26 Score=49.10 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 469
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.58 E-value=0.49 Score=48.77 Aligned_cols=45 Identities=27% Similarity=0.252 Sum_probs=34.8
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccH
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDE 249 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (725)
+.-+++=|+|.+|+||||||.++.-. ....-..++|+..-..++.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 35678889999999999999987653 3344456789987777775
No 470
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.53 E-value=0.28 Score=47.28 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
.-.+++|+|..|.|||||++.+.... ..-...+++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~ 60 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL---NPEKGEILF 60 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeeEEE
Confidence 34689999999999999999998732 233445554
No 471
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=89.52 E-value=0.22 Score=47.65 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+|.|-|+-|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998863
No 472
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=89.51 E-value=0.28 Score=45.12 Aligned_cols=21 Identities=38% Similarity=0.325 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|+|..|+|||||.+.+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 789999999999999999875
No 473
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=89.49 E-value=0.29 Score=45.55 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999874
No 474
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.48 E-value=0.35 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.++.++|..|+||||++.++...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 475
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=89.48 E-value=0.28 Score=45.15 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.++|.+|+|||||++.+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999988775
No 476
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=89.48 E-value=0.27 Score=45.78 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.++|.+|+|||||++...++
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987654
No 477
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.45 E-value=0.27 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|.|||||++.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 345899999999999999999964
No 478
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=89.45 E-value=0.28 Score=48.27 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=26.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
=.+++|+|..|.|||||++.+..-. ......+++
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~ 67 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY---LPDSGRILV 67 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEE
Confidence 3589999999999999999998732 234455554
No 479
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=89.45 E-value=0.28 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 480
>PRK10908 cell division protein FtsE; Provisional
Probab=89.43 E-value=0.28 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 481
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=89.40 E-value=0.28 Score=47.57 Aligned_cols=35 Identities=26% Similarity=0.179 Sum_probs=26.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
.-.+++|+|..|.|||||++.+..-. ..-...+++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~ 59 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI---KPDSGEITF 59 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEE
Confidence 34689999999999999999998631 223455554
No 482
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=89.39 E-value=0.29 Score=47.67 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|+|.|..|.||||+|+.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 483
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=89.38 E-value=0.27 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 484
>PRK12338 hypothetical protein; Provisional
Probab=89.36 E-value=0.32 Score=49.76 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|.+|+||||+|+.+-.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~ 26 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELAR 26 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998865
No 485
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=89.35 E-value=0.26 Score=51.40 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3468999999999999999999873
No 486
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=89.34 E-value=0.27 Score=41.53 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=17.2
Q ss_pred EEEEEe-cCCCcHHHHHHHHhc
Q 036753 207 IISLVG-MGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G-~gGiGKTtLa~~v~~ 227 (725)
+|+++| -||+||||+|..+..
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~ 22 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAA 22 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHH
Confidence 467777 789999999988765
No 487
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=89.33 E-value=0.28 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHhcch
Q 036753 208 ISLVGMGGIGKTTLAQFAYNND 229 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~~ 229 (725)
|.|+|.+|+|||||++.+.++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6799999999999999988753
No 488
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=89.33 E-value=0.27 Score=48.92 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=25.7
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeee
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWV 241 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (725)
=.+++|+|..|.|||||++.+.... ......+++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 60 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLE---EITSGDLIV 60 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 4689999999999999999998732 233455544
No 489
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=89.32 E-value=0.27 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 490
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=89.31 E-value=0.29 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+||+|.|-||+||||+|-.+-.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~ 24 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSA 24 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6889999999999998877655
No 491
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=89.29 E-value=0.3 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 492
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.29 E-value=0.29 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 493
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=89.26 E-value=0.29 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||++.+..
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 494
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=89.26 E-value=0.31 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
=.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 495
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.25 E-value=0.018 Score=54.56 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=39.1
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.++..+.|+++.+.... +..-|+-+..|..|+++ .+. +..+|...+.+..++.+++..|. .+.+|.+.
T Consensus 40 ~~kr~tvld~~s~r~vn----~~~n~s~~t~~~rl~~s------knq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN----LGKNFSILTRLVRLDLS------KNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred ccceeeeehhhhhHHHh----hccchHHHHHHHHHhcc------Hhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 34444445554444221 12224444444455554 444 44455555555555555554444 45555555
Q ss_pred hcCCCCcEeecCCCc
Q 036753 502 CELYNLECLNVDDCQ 516 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~ 516 (725)
+++++++++++.++.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 555555555555444
No 496
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=89.25 E-value=0.29 Score=44.93 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 036753 208 ISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 208 i~i~G~gGiGKTtLa~~v~~~ 228 (725)
|.|+|.+|+|||||.+.+.+.
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999888765
No 497
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=89.24 E-value=0.29 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 498
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=89.22 E-value=0.29 Score=49.01 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.=.+++|+|..|.|||||++.+..-
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999873
No 499
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.22 E-value=0.54 Score=48.40 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=33.7
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccH
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDE 249 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (725)
+.-+++-|+|..|+||||||.++... ....=..++|+..-+.++.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH
Confidence 35679999999999999999887663 3333455678877766665
No 500
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.21 E-value=0.29 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.+++|+|..|.|||||++.+...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999863
Done!