Query 036753
Match_columns 725
No_of_seqs 477 out of 3695
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8E-30 2.7E-34 285.1 14.2 188 181-379 131-473 (549)
2 1ogq_A PGIP-2, polygalacturona 99.9 2E-23 6.9E-28 216.8 10.0 258 424-716 50-309 (313)
3 4fcg_A Uncharacterized protein 99.9 2.7E-22 9.3E-27 209.5 13.4 222 450-708 80-311 (328)
4 2id5_A Lingo-1, leucine rich r 99.9 1.5E-21 5E-26 215.7 17.2 282 397-719 32-316 (477)
5 4ecn_A Leucine-rich repeat pro 99.9 1.3E-21 4.5E-26 227.2 14.9 297 397-719 491-826 (876)
6 1vt4_I APAF-1 related killer D 99.9 5.2E-22 1.8E-26 224.8 11.0 172 180-371 130-437 (1221)
7 4eco_A Uncharacterized protein 99.9 9.2E-22 3.1E-26 224.5 13.2 298 397-719 249-586 (636)
8 4eco_A Uncharacterized protein 99.9 3.4E-22 1.2E-26 228.1 8.9 255 443-719 198-508 (636)
9 3rgz_A Protein brassinosteroid 99.9 1E-21 3.6E-26 229.3 13.1 267 422-716 416-722 (768)
10 2id5_A Lingo-1, leucine rich r 99.9 6.9E-21 2.4E-25 210.3 17.6 258 424-720 32-293 (477)
11 3v47_A TOLL-like receptor 5B a 99.8 8E-22 2.7E-26 216.5 9.9 144 397-552 30-177 (455)
12 3sfz_A APAF-1, apoptotic pepti 99.8 2.6E-21 8.9E-26 239.3 15.7 184 176-377 122-452 (1249)
13 3rgz_A Protein brassinosteroid 99.8 1.5E-21 5.1E-26 228.0 12.2 283 397-715 418-744 (768)
14 4fcg_A Uncharacterized protein 99.8 1.5E-21 5.1E-26 203.9 10.2 224 422-685 79-311 (328)
15 3o6n_A APL1; leucine-rich repe 99.8 4.5E-21 1.5E-25 205.9 14.0 268 397-709 45-350 (390)
16 4fmz_A Internalin; leucine ric 99.8 1.3E-20 4.3E-25 199.1 15.6 242 422-716 86-328 (347)
17 4ecn_A Leucine-rich repeat pro 99.8 9.6E-21 3.3E-25 220.0 15.0 288 397-707 448-785 (876)
18 3o6n_A APL1; leucine-rich repe 99.8 6.9E-21 2.4E-25 204.5 12.9 253 422-715 43-334 (390)
19 3oja_B Anopheles plasmodium-re 99.8 6.5E-21 2.2E-25 216.2 13.0 269 397-709 51-356 (597)
20 4fmz_A Internalin; leucine ric 99.8 3.2E-20 1.1E-24 196.0 15.3 257 397-709 88-344 (347)
21 2ft3_A Biglycan; proteoglycan, 99.8 8.4E-20 2.9E-24 191.4 18.0 268 399-719 35-316 (332)
22 3v47_A TOLL-like receptor 5B a 99.8 7.8E-21 2.7E-25 208.6 10.5 273 397-709 54-406 (455)
23 3oja_B Anopheles plasmodium-re 99.8 1.6E-20 5.4E-25 213.0 13.0 254 422-715 49-340 (597)
24 1xku_A Decorin; proteoglycan, 99.8 4.6E-20 1.6E-24 193.2 15.0 271 398-720 32-316 (330)
25 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.6E-25 196.2 9.4 251 397-690 50-306 (313)
26 1xku_A Decorin; proteoglycan, 99.8 4.7E-20 1.6E-24 193.2 14.2 266 397-708 52-329 (330)
27 3t6q_A CD180 antigen; protein- 99.8 3.1E-20 1.1E-24 211.6 13.1 285 398-709 255-558 (606)
28 1ziw_A TOLL-like receptor 3; i 99.8 3.5E-20 1.2E-24 214.2 13.5 156 397-567 25-185 (680)
29 2z80_A TOLL-like receptor 2, v 99.8 1.5E-19 5E-24 191.3 16.0 251 424-709 52-312 (353)
30 3t6q_A CD180 antigen; protein- 99.8 3.5E-20 1.2E-24 211.2 11.8 254 397-688 278-560 (606)
31 3bz5_A Internalin-J, INLJ; leu 99.8 2.1E-19 7.2E-24 196.1 16.2 256 397-716 42-304 (457)
32 3vq2_A TLR4, TOLL-like recepto 99.8 3E-19 1E-23 203.5 18.1 286 397-711 32-341 (606)
33 3vq2_A TLR4, TOLL-like recepto 99.8 1.5E-19 5.2E-24 205.9 15.2 154 397-565 56-216 (606)
34 1o6v_A Internalin A; bacterial 99.8 2.4E-19 8.3E-24 197.1 15.8 272 397-714 68-346 (466)
35 2z81_A CD282 antigen, TOLL-lik 99.8 9.6E-20 3.3E-24 205.0 12.8 152 397-562 26-181 (549)
36 3j0a_A TOLL-like receptor 5; m 99.8 2.2E-19 7.5E-24 211.9 16.3 159 397-567 24-188 (844)
37 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-19 4E-24 202.8 13.3 126 397-541 21-150 (520)
38 1o6v_A Internalin A; bacterial 99.8 6.8E-19 2.3E-23 193.5 19.2 274 397-716 90-370 (466)
39 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-19 8E-24 188.0 14.6 266 397-709 54-331 (332)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8E-19 2.7E-23 197.8 18.9 126 397-541 52-181 (562)
41 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.9E-24 188.1 10.7 226 424-686 28-259 (306)
42 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-19 4.4E-24 202.4 11.9 144 400-565 3-150 (520)
43 3j0a_A TOLL-like receptor 5; m 99.8 7.7E-19 2.6E-23 207.3 16.9 280 397-714 48-377 (844)
44 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.8E-23 191.0 15.6 238 401-709 58-301 (452)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.2E-19 2.5E-23 198.2 13.7 293 399-719 33-424 (562)
46 3zyj_A Leucine-rich repeat-con 99.8 1.8E-18 6.2E-23 188.6 15.6 166 401-589 47-216 (440)
47 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.7E-23 191.1 12.7 200 397-619 75-277 (452)
48 1ziw_A TOLL-like receptor 3; i 99.8 2.8E-18 9.5E-23 198.2 16.3 250 424-708 25-306 (680)
49 3zyj_A Leucine-rich repeat-con 99.8 1.4E-18 4.7E-23 189.6 12.2 151 397-563 64-217 (440)
50 2z80_A TOLL-like receptor 2, v 99.8 8.5E-19 2.9E-23 185.4 10.2 259 397-689 52-315 (353)
51 3bz5_A Internalin-J, INLJ; leu 99.8 7.9E-18 2.7E-22 183.7 18.2 232 422-715 40-281 (457)
52 2z63_A TOLL-like receptor 4, v 99.8 3.2E-18 1.1E-22 193.5 15.5 145 397-555 28-175 (570)
53 3o53_A Protein LRIM1, AGAP0063 99.8 7.8E-20 2.7E-24 190.2 1.1 247 422-717 32-281 (317)
54 2z81_A CD282 antigen, TOLL-lik 99.8 1.7E-18 5.9E-23 194.7 11.9 132 424-567 26-162 (549)
55 1wwl_A Monocyte differentiatio 99.7 2E-19 6.7E-24 186.7 2.4 205 449-709 93-307 (312)
56 3oja_A Leucine-rich immune mol 99.7 2.8E-19 9.5E-24 197.0 3.3 246 412-706 22-270 (487)
57 2z66_A Variable lymphocyte rec 99.7 3.6E-18 1.2E-22 176.8 11.3 231 397-663 28-262 (306)
58 1z6t_A APAF-1, apoptotic prote 99.7 1E-17 3.5E-22 189.9 15.9 178 178-374 124-449 (591)
59 3qfl_A MLA10; coiled-coil, (CC 99.7 5.6E-18 1.9E-22 145.0 9.7 81 4-88 1-83 (115)
60 4g8a_A TOLL-like receptor 4; l 99.7 8E-18 2.7E-22 192.7 13.7 130 397-541 52-185 (635)
61 2z63_A TOLL-like receptor 4, v 99.7 3.9E-18 1.3E-22 192.7 10.6 249 420-711 278-531 (570)
62 1ozn_A Reticulon 4 receptor; N 99.7 9.4E-18 3.2E-22 171.7 11.0 220 427-686 14-236 (285)
63 1ozn_A Reticulon 4 receptor; N 99.7 8.1E-18 2.8E-22 172.2 9.2 264 401-708 15-284 (285)
64 1h6u_A Internalin H; cell adhe 99.7 1.6E-17 5.5E-22 171.7 11.4 190 422-686 39-228 (308)
65 3o53_A Protein LRIM1, AGAP0063 99.7 7.5E-18 2.6E-22 175.1 7.5 222 443-711 26-250 (317)
66 3oja_A Leucine-rich immune mol 99.7 1.7E-17 5.9E-22 182.7 10.0 222 443-711 22-250 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.7 2.3E-16 7.8E-21 177.4 18.4 235 397-710 61-296 (622)
68 4g8a_A TOLL-like receptor 4; l 99.7 4E-17 1.4E-21 186.8 11.9 129 424-564 52-184 (635)
69 1p9a_G Platelet glycoprotein I 99.7 2.6E-16 8.9E-21 161.0 14.6 197 422-686 8-206 (290)
70 3g06_A SSPH2 (leucine-rich rep 99.7 6.4E-16 2.2E-20 173.7 18.5 244 397-721 40-283 (622)
71 2o6q_A Variable lymphocyte rec 99.7 5.7E-16 2E-20 156.9 15.9 196 425-686 17-216 (270)
72 2ast_B S-phase kinase-associat 99.7 8.1E-18 2.8E-22 176.6 2.3 130 424-563 70-205 (336)
73 1wwl_A Monocyte differentiatio 99.7 3.3E-18 1.1E-22 177.4 -1.5 199 422-686 93-307 (312)
74 1jl5_A Outer protein YOPM; leu 99.7 1E-15 3.4E-20 166.9 16.8 65 648-718 336-418 (454)
75 4glp_A Monocyte differentiatio 99.6 9.1E-16 3.1E-20 158.8 14.2 232 422-709 62-305 (310)
76 3rfs_A Internalin B, repeat mo 99.6 7.9E-16 2.7E-20 156.1 13.1 66 645-718 177-242 (272)
77 1jl5_A Outer protein YOPM; leu 99.6 3.7E-16 1.3E-20 170.3 10.5 61 645-715 233-293 (454)
78 2xwt_C Thyrotropin receptor; s 99.6 4.3E-16 1.5E-20 154.8 9.8 200 452-710 32-238 (239)
79 2ca6_A RAN GTPase-activating p 99.6 1.9E-17 6.4E-22 177.4 -1.0 266 421-707 29-339 (386)
80 2z62_A TOLL-like receptor 4, v 99.6 9E-16 3.1E-20 156.1 11.2 205 424-688 28-237 (276)
81 2z62_A TOLL-like receptor 4, v 99.6 5.2E-16 1.8E-20 157.8 9.4 201 451-709 28-235 (276)
82 1h6u_A Internalin H; cell adhe 99.6 2.9E-15 9.8E-20 154.8 14.5 144 397-564 41-184 (308)
83 1p9a_G Platelet glycoprotein I 99.6 3.4E-15 1.2E-19 152.6 13.8 198 397-663 10-209 (290)
84 2ast_B S-phase kinase-associat 99.6 9.5E-17 3.2E-21 168.4 1.1 252 425-721 48-315 (336)
85 2o6q_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 147.3 16.2 143 400-561 19-165 (270)
86 2ca6_A RAN GTPase-activating p 99.6 6.7E-17 2.3E-21 173.1 -1.8 246 443-709 24-314 (386)
87 3rfs_A Internalin B, repeat mo 99.6 6E-15 2E-19 149.6 11.2 127 422-564 39-168 (272)
88 1z7x_W Ribonuclease inhibitor; 99.6 1.1E-16 3.8E-21 175.7 -2.5 302 397-709 56-409 (461)
89 1z7x_W Ribonuclease inhibitor; 99.5 9.5E-17 3.2E-21 176.3 -4.7 70 641-713 276-355 (461)
90 1h6t_A Internalin B; cell adhe 99.5 1.5E-14 5E-19 148.0 11.2 170 447-686 42-211 (291)
91 3goz_A Leucine-rich repeat-con 99.5 6.3E-16 2.1E-20 163.8 0.4 242 422-686 20-295 (362)
92 4ay9_X Follicle-stimulating ho 99.5 1.1E-14 3.7E-19 153.4 9.6 237 427-707 12-255 (350)
93 1m9s_A Internalin B; cell inva 99.5 2.7E-15 9.1E-20 168.5 4.7 171 447-687 39-209 (605)
94 3m19_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 137.3 15.7 174 452-687 15-191 (251)
95 3goz_A Leucine-rich repeat-con 99.5 6.1E-15 2.1E-19 156.2 4.8 88 443-539 14-119 (362)
96 2xwt_C Thyrotropin receptor; s 99.5 3.3E-14 1.1E-18 141.1 8.7 198 424-687 31-238 (239)
97 4glp_A Monocyte differentiatio 99.5 7.9E-15 2.7E-19 151.8 4.0 202 422-686 89-305 (310)
98 1m9s_A Internalin B; cell inva 99.5 3.5E-14 1.2E-18 159.4 9.2 171 422-663 41-211 (605)
99 4ay9_X Follicle-stimulating ho 99.5 5.4E-14 1.8E-18 148.1 10.0 220 424-684 30-255 (350)
100 3ogk_B Coronatine-insensitive 99.5 4.2E-15 1.5E-19 168.6 1.3 41 645-686 484-524 (592)
101 3ogk_B Coronatine-insensitive 99.5 3E-14 1E-18 161.6 6.2 256 422-709 190-474 (592)
102 3cvr_A Invasion plasmid antige 99.5 5E-14 1.7E-18 156.4 7.7 188 452-693 60-248 (571)
103 1xeu_A Internalin C; cellular 99.4 8.1E-14 2.8E-18 140.2 7.1 167 449-686 17-183 (263)
104 1h6t_A Internalin B; cell adhe 99.4 9E-13 3.1E-17 134.7 13.7 169 422-620 44-212 (291)
105 4ezg_A Putative uncharacterize 99.4 9.2E-13 3.1E-17 126.3 12.1 145 398-561 45-189 (197)
106 4ezg_A Putative uncharacterize 99.4 5E-13 1.7E-17 128.2 10.1 127 422-563 42-169 (197)
107 3m19_A Variable lymphocyte rec 99.4 2.2E-12 7.4E-17 128.9 12.3 144 401-563 18-165 (251)
108 2p1m_B Transport inhibitor res 99.4 9.1E-14 3.1E-18 157.7 2.2 109 422-538 128-244 (594)
109 2o6s_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 123.5 12.7 171 466-699 16-190 (208)
110 2p1m_B Transport inhibitor res 99.4 4.3E-14 1.5E-18 160.4 -1.4 60 648-710 455-518 (594)
111 2ell_A Acidic leucine-rich nuc 99.4 2.9E-12 1E-16 119.4 11.2 133 422-567 22-161 (168)
112 3cvr_A Invasion plasmid antige 99.3 9.6E-13 3.3E-17 146.1 8.7 194 398-675 60-254 (571)
113 3e6j_A Variable lymphocyte rec 99.3 4.7E-12 1.6E-16 124.5 11.1 128 424-564 40-170 (229)
114 1xeu_A Internalin C; cellular 99.3 8.8E-12 3E-16 125.2 13.0 146 397-567 41-186 (263)
115 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.9E-17 150.9 7.2 114 443-566 216-329 (727)
116 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 7.9E-17 117.4 7.6 127 422-561 15-148 (149)
117 2v70_A SLIT-2, SLIT homolog 2 99.3 1.2E-11 4E-16 120.7 11.8 148 401-564 15-164 (220)
118 2v9t_B SLIT homolog 2 protein 99.3 9.2E-12 3.1E-16 121.5 10.8 128 424-564 32-163 (220)
119 2o6s_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 119.7 11.5 127 424-563 28-158 (208)
120 1a9n_A U2A', U2A'; complex (nu 99.3 1E-11 3.5E-16 116.6 9.0 129 422-565 17-152 (176)
121 2ell_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 114.9 8.7 133 397-548 24-165 (168)
122 2v9t_B SLIT homolog 2 protein 99.2 6.8E-11 2.3E-15 115.3 11.2 124 427-565 14-140 (220)
123 3e6j_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 114.7 11.5 130 397-541 40-171 (229)
124 2xot_A Amphoterin-induced prot 99.2 5.4E-11 1.8E-15 125.6 10.0 127 425-563 40-173 (361)
125 1dce_A Protein (RAB geranylger 99.2 6.6E-11 2.3E-15 132.0 10.5 93 466-564 450-544 (567)
126 2je0_A Acidic leucine-rich nuc 99.1 3.4E-11 1.2E-15 109.6 6.2 123 397-537 17-148 (149)
127 4b8c_D Glucose-repressible alc 99.1 1.1E-11 3.9E-16 142.6 3.0 116 421-549 221-336 (727)
128 1dce_A Protein (RAB geranylger 99.1 5.3E-11 1.8E-15 132.7 8.3 101 482-589 442-542 (567)
129 2xot_A Amphoterin-induced prot 99.1 8.7E-11 3E-15 124.0 9.5 175 427-620 21-201 (361)
130 2v70_A SLIT-2, SLIT homolog 2 99.1 1.9E-10 6.6E-15 112.1 10.4 131 397-541 32-165 (220)
131 1a9n_A U2A', U2A'; complex (nu 99.1 2E-10 6.8E-15 107.7 8.5 125 397-540 19-151 (176)
132 1w8a_A SLIT protein; signaling 99.1 2.7E-10 9.3E-15 108.4 9.4 104 425-539 30-136 (192)
133 1w8a_A SLIT protein; signaling 99.0 4.8E-10 1.6E-14 106.7 10.0 125 427-566 11-139 (192)
134 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.5E-16 119.1 -2.5 103 422-539 46-150 (198)
135 1ds9_A Outer arm dynein; leuci 99.0 1.8E-12 6E-17 124.5 -7.9 110 443-564 40-151 (198)
136 2wfh_A SLIT homolog 2 protein 99.0 1.2E-09 4.2E-14 103.9 10.4 102 425-539 32-136 (193)
137 2wfh_A SLIT homolog 2 protein 99.0 2.1E-09 7.2E-14 102.3 11.8 122 427-564 13-137 (193)
138 2o6r_A Variable lymphocyte rec 99.0 2.1E-09 7.1E-14 100.8 11.1 105 424-540 28-135 (177)
139 2r9u_A Variable lymphocyte rec 98.9 3.7E-09 1.3E-13 98.6 8.1 98 427-539 15-115 (174)
140 2r9u_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 97.8 8.7 100 454-565 15-117 (174)
141 3sb4_A Hypothetical leucine ri 98.8 3.5E-08 1.2E-12 102.5 14.1 255 423-722 24-320 (329)
142 3g39_A Variable lymphocyte rec 98.8 8.1E-09 2.8E-13 96.0 8.0 99 426-539 11-112 (170)
143 2o6r_A Variable lymphocyte rec 98.8 1.7E-08 6E-13 94.4 10.3 123 426-564 9-135 (177)
144 3sb4_A Hypothetical leucine ri 98.8 7.3E-09 2.5E-13 107.7 7.2 236 423-705 48-328 (329)
145 3g39_A Variable lymphocyte rec 98.7 2.9E-08 9.8E-13 92.2 9.8 101 453-565 11-114 (170)
146 2ifg_A High affinity nerve gro 98.5 1.8E-07 6.3E-12 97.8 7.7 99 428-540 12-114 (347)
147 4fdw_A Leucine rich hypothetic 98.5 3.7E-06 1.3E-10 89.3 17.9 74 482-560 158-233 (401)
148 4fdw_A Leucine rich hypothetic 98.4 1.3E-06 4.5E-11 92.8 13.9 238 422-706 134-378 (401)
149 2ifg_A High affinity nerve gro 98.4 4.4E-07 1.5E-11 94.9 9.1 93 408-516 20-114 (347)
150 2ra8_A Uncharacterized protein 98.4 9E-08 3.1E-12 100.0 2.9 90 578-686 250-341 (362)
151 3un9_A NLR family member X1; l 98.3 8.6E-08 2.9E-12 100.9 0.7 109 423-540 71-194 (372)
152 2ra8_A Uncharacterized protein 98.2 2.2E-07 7.6E-12 97.0 0.7 82 422-513 137-227 (362)
153 3un9_A NLR family member X1; l 98.2 4E-08 1.4E-12 103.5 -5.1 105 450-563 71-193 (372)
154 1w5s_A Origin recognition comp 97.9 9.6E-06 3.3E-10 86.8 6.6 85 177-263 21-114 (412)
155 3e4g_A ATP synthase subunit S, 97.9 3.3E-06 1.1E-10 77.4 2.0 89 608-714 61-155 (176)
156 3rw6_A Nuclear RNA export fact 97.8 8.3E-06 2.8E-10 80.6 2.7 79 448-535 167-257 (267)
157 3e4g_A ATP synthase subunit S, 97.7 7.6E-06 2.6E-10 74.9 1.1 68 472-540 52-125 (176)
158 1io0_A Tropomodulin; LRR prote 97.6 3.2E-05 1.1E-09 72.5 4.4 110 421-539 33-161 (185)
159 2qby_B CDC6 homolog 3, cell di 97.6 6.6E-05 2.2E-09 79.4 6.6 81 178-262 20-109 (384)
160 2qby_A CDC6 homolog 1, cell di 97.5 5.1E-05 1.8E-09 80.2 4.9 80 177-260 19-101 (386)
161 1fnn_A CDC6P, cell division co 97.5 0.00016 5.3E-09 76.6 8.2 83 178-262 17-100 (389)
162 2v1u_A Cell division control p 97.5 0.00015 5.3E-09 76.5 7.7 82 178-263 19-106 (387)
163 2qen_A Walker-type ATPase; unk 97.5 0.00011 3.7E-09 76.5 6.1 70 176-260 10-85 (350)
164 1io0_A Tropomodulin; LRR prote 97.4 5.3E-05 1.8E-09 70.9 2.5 88 443-539 28-133 (185)
165 2fna_A Conserved hypothetical 97.3 0.00031 1.1E-08 73.1 8.0 70 176-260 11-85 (357)
166 3rw6_A Nuclear RNA export fact 97.3 0.00026 8.9E-09 69.8 6.5 82 422-512 168-258 (267)
167 4fs7_A Uncharacterized protein 97.3 0.0016 5.6E-08 68.8 12.7 57 645-706 316-374 (394)
168 4gt6_A Cell surface protein; l 97.2 0.0032 1.1E-07 66.5 13.5 60 644-708 306-367 (394)
169 1jbk_A CLPB protein; beta barr 97.1 0.00037 1.3E-08 65.2 5.3 45 178-228 22-66 (195)
170 4fs7_A Uncharacterized protein 97.0 0.0013 4.4E-08 69.6 8.7 69 645-720 293-363 (394)
171 2chg_A Replication factor C sm 97.0 0.0015 5.3E-08 62.5 8.4 46 177-228 16-61 (226)
172 2p65_A Hypothetical protein PF 97.0 0.00055 1.9E-08 63.7 4.7 45 178-228 22-66 (187)
173 1njg_A DNA polymerase III subu 96.9 0.00072 2.5E-08 65.9 5.0 46 178-228 23-68 (250)
174 3te6_A Regulatory protein SIR3 96.8 0.001 3.5E-08 67.3 5.7 81 179-263 21-108 (318)
175 4h09_A Hypothetical leucine ri 96.6 0.024 8.2E-07 59.3 14.7 73 644-722 281-355 (379)
176 3n70_A Transport activator; si 96.4 0.0021 7.3E-08 57.1 3.8 46 179-228 2-47 (145)
177 1sxj_B Activator 1 37 kDa subu 96.3 0.004 1.4E-07 63.7 5.9 45 178-228 21-65 (323)
178 3h4m_A Proteasome-activating n 96.1 0.004 1.4E-07 62.5 4.9 53 175-227 14-73 (285)
179 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0046 1.6E-07 61.1 5.0 52 176-227 4-61 (262)
180 2w58_A DNAI, primosome compone 96.1 0.0042 1.4E-07 58.7 4.3 61 179-243 26-90 (202)
181 1iqp_A RFCS; clamp loader, ext 96.0 0.0059 2E-07 62.5 5.4 45 178-228 25-69 (327)
182 3co5_A Putative two-component 95.9 0.0025 8.5E-08 56.5 1.9 46 179-228 5-50 (143)
183 4h09_A Hypothetical leucine ri 95.9 0.23 7.7E-06 51.7 17.2 72 644-721 258-331 (379)
184 1rz3_A Hypothetical protein rb 95.8 0.0099 3.4E-07 56.1 5.6 42 183-227 3-44 (201)
185 3cf0_A Transitional endoplasmi 95.8 0.0089 3E-07 60.5 5.5 54 175-228 12-72 (301)
186 3pfi_A Holliday junction ATP-d 95.7 0.0049 1.7E-07 63.6 3.6 50 177-227 28-77 (338)
187 3syl_A Protein CBBX; photosynt 95.6 0.011 3.7E-07 60.0 5.6 50 179-228 32-90 (309)
188 3bos_A Putative DNA replicatio 95.6 0.018 6.2E-07 55.7 6.9 59 178-244 28-89 (242)
189 3eie_A Vacuolar protein sortin 95.6 0.013 4.6E-07 59.8 6.1 53 175-227 15-73 (322)
190 4gt6_A Cell surface protein; l 95.6 0.15 5E-06 53.6 14.3 107 420-538 83-191 (394)
191 3pxg_A Negative regulator of g 95.5 0.0092 3.1E-07 64.4 4.9 44 178-227 180-223 (468)
192 1hqc_A RUVB; extended AAA-ATPa 95.5 0.0041 1.4E-07 63.7 1.9 50 177-227 11-60 (324)
193 3b9p_A CG5977-PA, isoform A; A 95.5 0.012 4.2E-07 59.2 5.4 52 176-227 19-76 (297)
194 1jr3_A DNA polymerase III subu 95.5 0.01 3.6E-07 61.9 5.0 45 178-227 16-60 (373)
195 3ec2_A DNA replication protein 95.4 0.0092 3.1E-07 55.1 3.9 24 205-228 38-61 (180)
196 3c8u_A Fructokinase; YP_612366 95.4 0.012 4.2E-07 55.8 4.8 24 204-227 21-44 (208)
197 1sxj_D Activator 1 41 kDa subu 95.4 0.0094 3.2E-07 61.7 4.2 46 177-228 36-81 (353)
198 3d8b_A Fidgetin-like protein 1 95.4 0.011 3.7E-07 61.4 4.6 52 176-227 82-139 (357)
199 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.02 6.9E-07 58.4 6.1 54 175-228 9-68 (322)
200 1lv7_A FTSH; alpha/beta domain 95.3 0.012 4.2E-07 57.9 4.4 52 176-227 10-67 (257)
201 2chq_A Replication factor C sm 95.3 0.011 3.8E-07 60.1 4.2 46 177-228 16-61 (319)
202 3uk6_A RUVB-like 2; hexameric 95.1 0.018 6.2E-07 60.0 5.5 48 177-228 43-93 (368)
203 1sxj_A Activator 1 95 kDa subu 95.1 0.018 6.1E-07 63.0 5.6 52 177-228 38-100 (516)
204 3lw7_A Adenylate kinase relate 95.1 0.01 3.5E-07 54.3 3.0 20 206-225 2-21 (179)
205 2ga8_A Hypothetical 39.9 kDa p 95.0 0.019 6.4E-07 58.5 5.0 45 181-227 2-46 (359)
206 1zp6_A Hypothetical protein AT 95.0 0.013 4.5E-07 54.6 3.4 24 204-227 8-31 (191)
207 1odf_A YGR205W, hypothetical 3 94.9 0.019 6.4E-07 57.5 4.6 25 203-227 29-53 (290)
208 2bjv_A PSP operon transcriptio 94.9 0.014 4.9E-07 57.7 3.7 47 178-228 6-52 (265)
209 1in4_A RUVB, holliday junction 94.9 0.0098 3.3E-07 61.1 2.5 49 178-227 25-73 (334)
210 3pvs_A Replication-associated 94.8 0.017 5.9E-07 61.7 4.3 44 178-227 26-72 (447)
211 1sxj_E Activator 1 40 kDa subu 94.7 0.015 5.1E-07 60.3 3.4 44 178-227 14-58 (354)
212 2r62_A Cell division protease 94.7 0.015 5.1E-07 57.6 3.1 51 177-227 10-66 (268)
213 3vaa_A Shikimate kinase, SK; s 94.7 0.016 5.5E-07 54.5 3.2 24 204-227 24-47 (199)
214 3kb2_A SPBC2 prophage-derived 94.6 0.015 5.2E-07 53.0 2.9 22 206-227 2-23 (173)
215 2qp9_X Vacuolar protein sortin 94.5 0.032 1.1E-06 57.7 5.4 54 175-228 48-107 (355)
216 4gp7_A Metallophosphoesterase; 94.5 0.019 6.7E-07 52.4 3.3 24 204-227 8-31 (171)
217 1qhx_A CPT, protein (chloramph 94.5 0.017 5.9E-07 53.0 2.9 22 206-227 4-25 (178)
218 1kag_A SKI, shikimate kinase I 94.5 0.014 4.9E-07 53.3 2.3 22 206-227 5-26 (173)
219 1ojl_A Transcriptional regulat 94.5 0.023 7.7E-07 57.5 3.9 46 178-227 2-47 (304)
220 3uie_A Adenylyl-sulfate kinase 94.4 0.023 7.9E-07 53.4 3.7 24 204-227 24-47 (200)
221 1ofh_A ATP-dependent HSL prote 94.4 0.021 7E-07 57.9 3.6 50 178-227 15-72 (310)
222 1kgd_A CASK, peripheral plasma 94.4 0.018 6.2E-07 53.1 2.9 23 205-227 5-27 (180)
223 4fcw_A Chaperone protein CLPB; 94.4 0.039 1.3E-06 55.8 5.7 49 179-227 18-69 (311)
224 3fwy_A Light-independent proto 94.4 0.021 7.2E-07 57.8 3.5 25 203-227 46-70 (314)
225 4b4t_K 26S protease regulatory 94.4 0.04 1.4E-06 58.0 5.7 55 173-227 167-228 (428)
226 3vfd_A Spastin; ATPase, microt 94.3 0.035 1.2E-06 58.3 5.2 53 175-227 112-170 (389)
227 3pxi_A Negative regulator of g 94.3 0.029 9.8E-07 64.7 4.9 44 178-227 180-223 (758)
228 1qvr_A CLPB protein; coiled co 94.3 0.024 8.3E-07 66.2 4.3 45 178-228 170-214 (854)
229 1d2n_A N-ethylmaleimide-sensit 94.3 0.026 8.8E-07 56.0 3.9 47 179-228 34-87 (272)
230 1ly1_A Polynucleotide kinase; 94.3 0.023 7.7E-07 52.3 3.2 22 206-227 3-24 (181)
231 1uf9_A TT1252 protein; P-loop, 94.3 0.027 9.2E-07 52.9 3.8 25 203-227 6-30 (203)
232 2p5t_B PEZT; postsegregational 94.3 0.038 1.3E-06 54.1 5.0 42 185-227 13-54 (253)
233 2qt1_A Nicotinamide riboside k 94.3 0.029 9.9E-07 53.0 4.0 24 204-227 20-43 (207)
234 2bdt_A BH3686; alpha-beta prot 94.3 0.023 7.9E-07 52.8 3.2 22 206-227 3-24 (189)
235 1knq_A Gluconate kinase; ALFA/ 94.2 0.029 1E-06 51.3 3.9 24 204-227 7-30 (175)
236 3tqc_A Pantothenate kinase; bi 94.2 0.042 1.4E-06 55.6 5.2 44 182-227 71-114 (321)
237 3u61_B DNA polymerase accessor 94.2 0.036 1.2E-06 56.6 4.8 46 177-227 25-70 (324)
238 4b4t_L 26S protease subunit RP 94.2 0.048 1.6E-06 57.5 5.8 56 173-228 176-238 (437)
239 2zan_A Vacuolar protein sortin 94.2 0.038 1.3E-06 59.1 5.2 53 175-227 131-189 (444)
240 3asz_A Uridine kinase; cytidin 94.2 0.028 9.5E-07 53.3 3.7 24 204-227 5-28 (211)
241 2x8a_A Nuclear valosin-contain 94.1 0.039 1.3E-06 54.7 4.8 52 175-227 7-66 (274)
242 1gvn_B Zeta; postsegregational 94.1 0.051 1.8E-06 54.3 5.5 41 186-227 15-55 (287)
243 3trf_A Shikimate kinase, SK; a 94.1 0.024 8.1E-07 52.5 2.9 23 205-227 5-27 (185)
244 4b4t_J 26S protease regulatory 94.1 0.04 1.4E-06 57.2 4.7 55 173-227 143-204 (405)
245 2r44_A Uncharacterized protein 94.1 0.034 1.2E-06 56.9 4.3 42 178-227 27-68 (331)
246 4eun_A Thermoresistant glucoki 94.0 0.026 9E-07 53.0 3.2 24 204-227 28-51 (200)
247 1ixz_A ATP-dependent metallopr 94.0 0.032 1.1E-06 54.7 3.9 53 176-228 14-72 (254)
248 2if2_A Dephospho-COA kinase; a 94.0 0.027 9.1E-07 53.1 3.2 22 206-227 2-23 (204)
249 3tr0_A Guanylate kinase, GMP k 94.0 0.025 8.6E-07 53.3 2.9 23 205-227 7-29 (205)
250 1sxj_C Activator 1 40 kDa subu 94.0 0.04 1.4E-06 56.7 4.6 44 178-227 25-68 (340)
251 1r6b_X CLPA protein; AAA+, N-t 93.9 0.042 1.4E-06 63.3 5.3 44 178-227 186-229 (758)
252 1xjc_A MOBB protein homolog; s 93.9 0.028 9.7E-07 50.9 3.0 24 204-227 3-26 (169)
253 1uj2_A Uridine-cytidine kinase 93.9 0.03 1E-06 54.8 3.5 25 203-227 20-44 (252)
254 4b4t_H 26S protease regulatory 93.9 0.047 1.6E-06 57.6 5.0 53 175-227 206-265 (467)
255 1zuh_A Shikimate kinase; alpha 93.9 0.027 9.3E-07 51.2 2.8 24 204-227 6-29 (168)
256 3t61_A Gluconokinase; PSI-biol 93.9 0.022 7.7E-07 53.6 2.3 23 205-227 18-40 (202)
257 1jjv_A Dephospho-COA kinase; P 93.9 0.03 1E-06 52.8 3.2 22 206-227 3-24 (206)
258 2rhm_A Putative kinase; P-loop 93.9 0.039 1.3E-06 51.3 4.0 24 204-227 4-27 (193)
259 4b4t_M 26S protease regulatory 93.8 0.036 1.2E-06 58.4 3.9 55 173-227 176-237 (434)
260 2kjq_A DNAA-related protein; s 93.8 0.019 6.4E-07 51.1 1.5 24 205-228 36-59 (149)
261 3a00_A Guanylate kinase, GMP k 93.8 0.024 8.2E-07 52.6 2.3 22 206-227 2-23 (186)
262 1nks_A Adenylate kinase; therm 93.8 0.033 1.1E-06 51.8 3.3 22 206-227 2-23 (194)
263 3hws_A ATP-dependent CLP prote 93.7 0.047 1.6E-06 56.7 4.7 49 179-227 16-73 (363)
264 1ye8_A Protein THEP1, hypothet 93.7 0.033 1.1E-06 51.2 3.1 22 207-228 2-23 (178)
265 2j41_A Guanylate kinase; GMP, 93.7 0.034 1.2E-06 52.4 3.3 23 205-227 6-28 (207)
266 1cke_A CK, MSSA, protein (cyti 93.7 0.031 1.1E-06 53.6 3.0 22 206-227 6-27 (227)
267 3nbx_X ATPase RAVA; AAA+ ATPas 93.6 0.044 1.5E-06 59.1 4.4 42 179-228 23-64 (500)
268 2wsm_A Hydrogenase expression/ 93.6 0.046 1.6E-06 52.1 4.1 43 180-228 11-53 (221)
269 2c9o_A RUVB-like 1; hexameric 93.6 0.044 1.5E-06 58.9 4.4 51 177-228 36-86 (456)
270 3iij_A Coilin-interacting nucl 93.6 0.031 1.1E-06 51.4 2.7 24 204-227 10-33 (180)
271 1l8q_A Chromosomal replication 93.6 0.067 2.3E-06 54.5 5.5 25 204-228 36-60 (324)
272 1y63_A LMAJ004144AAA protein; 93.6 0.038 1.3E-06 51.1 3.3 24 204-227 9-32 (184)
273 2jaq_A Deoxyguanosine kinase; 93.6 0.032 1.1E-06 52.4 2.9 21 207-227 2-22 (205)
274 3hu3_A Transitional endoplasmi 93.5 0.045 1.6E-06 59.0 4.3 51 177-227 203-260 (489)
275 2grj_A Dephospho-COA kinase; T 93.5 0.039 1.3E-06 51.4 3.2 25 203-227 10-34 (192)
276 2yvu_A Probable adenylyl-sulfa 93.5 0.045 1.6E-06 50.6 3.7 24 204-227 12-35 (186)
277 1ukz_A Uridylate kinase; trans 93.5 0.043 1.5E-06 51.6 3.6 24 204-227 14-37 (203)
278 1ypw_A Transitional endoplasmi 93.5 0.049 1.7E-06 62.8 4.7 53 175-227 201-260 (806)
279 3aez_A Pantothenate kinase; tr 93.5 0.043 1.5E-06 55.4 3.8 25 203-227 88-112 (312)
280 1kht_A Adenylate kinase; phosp 93.4 0.035 1.2E-06 51.5 2.9 22 206-227 4-25 (192)
281 2ce7_A Cell division protein F 93.4 0.078 2.7E-06 56.8 5.8 54 175-228 13-72 (476)
282 1via_A Shikimate kinase; struc 93.4 0.031 1E-06 51.2 2.3 22 206-227 5-26 (175)
283 2qor_A Guanylate kinase; phosp 93.4 0.03 1E-06 52.8 2.3 24 204-227 11-34 (204)
284 4b4t_I 26S protease regulatory 93.4 0.1 3.4E-06 54.5 6.4 56 173-228 177-239 (437)
285 1lvg_A Guanylate kinase, GMP k 93.4 0.031 1.1E-06 52.5 2.3 22 206-227 5-26 (198)
286 1iy2_A ATP-dependent metallopr 93.3 0.046 1.6E-06 54.4 3.7 54 175-228 37-96 (278)
287 2ze6_A Isopentenyl transferase 93.3 0.042 1.4E-06 53.8 3.2 22 206-227 2-23 (253)
288 2bbw_A Adenylate kinase 4, AK4 93.3 0.04 1.4E-06 53.7 3.1 23 205-227 27-49 (246)
289 2c95_A Adenylate kinase 1; tra 93.3 0.046 1.6E-06 51.0 3.4 24 204-227 8-31 (196)
290 1znw_A Guanylate kinase, GMP k 93.3 0.038 1.3E-06 52.2 2.9 24 204-227 19-42 (207)
291 2f1r_A Molybdopterin-guanine d 93.3 0.029 9.8E-07 51.2 1.9 22 206-227 3-24 (171)
292 3tau_A Guanylate kinase, GMP k 93.3 0.045 1.5E-06 51.8 3.3 24 204-227 7-30 (208)
293 1htw_A HI0065; nucleotide-bind 93.3 0.048 1.7E-06 48.9 3.3 24 204-227 32-55 (158)
294 2iyv_A Shikimate kinase, SK; t 93.2 0.031 1E-06 51.7 2.1 21 207-227 4-24 (184)
295 2hf9_A Probable hydrogenase ni 93.2 0.081 2.8E-06 50.6 5.2 25 204-228 37-61 (226)
296 2f6r_A COA synthase, bifunctio 93.2 0.054 1.9E-06 53.9 3.9 23 204-226 74-96 (281)
297 4e22_A Cytidylate kinase; P-lo 93.2 0.042 1.4E-06 53.8 3.0 24 204-227 26-49 (252)
298 1tev_A UMP-CMP kinase; ploop, 93.2 0.046 1.6E-06 50.9 3.2 23 205-227 3-25 (196)
299 2jeo_A Uridine-cytidine kinase 93.2 0.052 1.8E-06 52.8 3.7 24 204-227 24-47 (245)
300 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.049 1.7E-06 53.6 3.5 24 204-227 3-26 (260)
301 3cm0_A Adenylate kinase; ATP-b 93.1 0.048 1.6E-06 50.4 3.2 22 206-227 5-26 (186)
302 3rfe_A Platelet glycoprotein I 93.1 0.11 3.8E-06 44.8 5.2 34 482-516 32-66 (130)
303 2bwj_A Adenylate kinase 5; pho 93.0 0.047 1.6E-06 51.0 3.0 23 205-227 12-34 (199)
304 1e6c_A Shikimate kinase; phosp 93.0 0.038 1.3E-06 50.4 2.2 22 206-227 3-24 (173)
305 1rj9_A FTSY, signal recognitio 93.0 0.053 1.8E-06 54.5 3.5 24 204-227 101-124 (304)
306 3b9q_A Chloroplast SRP recepto 93.0 0.099 3.4E-06 52.5 5.5 24 204-227 99-122 (302)
307 1qf9_A UMP/CMP kinase, protein 93.0 0.069 2.4E-06 49.5 4.1 24 204-227 5-28 (194)
308 3cf2_A TER ATPase, transitiona 92.9 0.14 4.7E-06 58.4 7.2 56 173-228 199-261 (806)
309 2pt5_A Shikimate kinase, SK; a 92.9 0.051 1.7E-06 49.2 3.0 21 207-227 2-22 (168)
310 1zu4_A FTSY; GTPase, signal re 92.9 0.11 3.9E-06 52.5 5.8 25 203-227 103-127 (320)
311 2pez_A Bifunctional 3'-phospho 92.9 0.061 2.1E-06 49.4 3.5 24 204-227 4-27 (179)
312 1z6g_A Guanylate kinase; struc 92.8 0.04 1.4E-06 52.5 2.3 23 205-227 23-45 (218)
313 1gtv_A TMK, thymidylate kinase 92.8 0.035 1.2E-06 52.6 1.9 21 207-227 2-22 (214)
314 3p32_A Probable GTPase RV1496/ 92.8 0.1 3.5E-06 53.9 5.6 37 187-227 65-101 (355)
315 2cvh_A DNA repair and recombin 92.8 0.1 3.5E-06 49.5 5.1 45 204-253 19-63 (220)
316 2plr_A DTMP kinase, probable t 92.7 0.059 2E-06 50.9 3.2 23 205-227 4-26 (213)
317 2z4s_A Chromosomal replication 92.7 0.057 1.9E-06 57.6 3.4 30 205-236 130-159 (440)
318 3t15_A Ribulose bisphosphate c 92.7 0.07 2.4E-06 53.5 3.9 25 204-228 35-59 (293)
319 2i3b_A HCR-ntpase, human cance 92.6 0.049 1.7E-06 50.5 2.5 22 207-228 3-24 (189)
320 2cdn_A Adenylate kinase; phosp 92.6 0.067 2.3E-06 50.2 3.5 24 204-227 19-42 (201)
321 1vma_A Cell division protein F 92.6 0.11 3.8E-06 52.2 5.3 25 203-227 102-126 (306)
322 2pbr_A DTMP kinase, thymidylat 92.6 0.055 1.9E-06 50.3 2.9 21 207-227 2-22 (195)
323 2yhs_A FTSY, cell division pro 92.6 0.12 4.1E-06 55.1 5.7 25 203-227 291-315 (503)
324 2og2_A Putative signal recogni 92.6 0.12 4.2E-06 53.0 5.6 24 204-227 156-179 (359)
325 1vht_A Dephospho-COA kinase; s 92.5 0.075 2.6E-06 50.6 3.7 23 205-227 4-26 (218)
326 2vli_A Antibiotic resistance p 92.5 0.042 1.4E-06 50.6 1.8 23 205-227 5-27 (183)
327 1sq5_A Pantothenate kinase; P- 92.5 0.075 2.6E-06 53.7 3.8 24 204-227 79-102 (308)
328 3nwj_A ATSK2; P loop, shikimat 92.5 0.049 1.7E-06 53.0 2.3 22 206-227 49-70 (250)
329 2onk_A Molybdate/tungstate ABC 92.4 0.063 2.2E-06 51.9 3.1 23 204-227 24-46 (240)
330 2px0_A Flagellar biosynthesis 92.4 0.07 2.4E-06 53.5 3.5 24 204-227 104-127 (296)
331 1ex7_A Guanylate kinase; subst 92.4 0.051 1.7E-06 50.2 2.2 22 206-227 2-23 (186)
332 2xxa_A Signal recognition part 92.4 0.13 4.3E-06 54.5 5.6 42 186-227 78-122 (433)
333 3ney_A 55 kDa erythrocyte memb 92.4 0.066 2.2E-06 49.9 3.0 24 204-227 18-41 (197)
334 2dhr_A FTSH; AAA+ protein, hex 92.3 0.086 2.9E-06 56.8 4.3 54 175-228 28-87 (499)
335 3rfe_A Platelet glycoprotein I 92.3 0.17 5.9E-06 43.6 5.4 52 485-540 12-66 (130)
336 2z0h_A DTMP kinase, thymidylat 92.3 0.19 6.5E-06 46.7 6.2 21 207-227 2-22 (197)
337 1np6_A Molybdopterin-guanine d 92.3 0.067 2.3E-06 48.8 2.9 24 204-227 5-28 (174)
338 2pcj_A ABC transporter, lipopr 92.3 0.07 2.4E-06 51.1 3.2 23 205-227 30-52 (224)
339 1nn5_A Similar to deoxythymidy 92.3 0.077 2.6E-06 50.2 3.5 23 205-227 9-31 (215)
340 1g41_A Heat shock protein HSLU 92.3 0.2 7E-06 52.8 6.9 50 178-227 15-72 (444)
341 3m6a_A ATP-dependent protease 92.2 0.071 2.4E-06 58.5 3.6 50 178-227 81-130 (543)
342 3tlx_A Adenylate kinase 2; str 92.2 0.11 3.9E-06 50.3 4.7 24 204-227 28-51 (243)
343 2wwf_A Thymidilate kinase, put 92.2 0.07 2.4E-06 50.4 3.0 24 204-227 9-32 (212)
344 1um8_A ATP-dependent CLP prote 92.2 0.11 3.7E-06 54.2 4.8 49 179-227 22-94 (376)
345 1yrb_A ATP(GTP)binding protein 92.2 0.093 3.2E-06 51.5 4.0 26 202-227 11-36 (262)
346 3tif_A Uncharacterized ABC tra 92.1 0.07 2.4E-06 51.5 3.0 23 205-227 31-53 (235)
347 1m7g_A Adenylylsulfate kinase; 92.1 0.083 2.8E-06 50.0 3.4 24 204-227 24-47 (211)
348 1n0w_A DNA repair protein RAD5 92.1 0.16 5.3E-06 49.1 5.5 56 204-260 23-82 (243)
349 2ged_A SR-beta, signal recogni 92.1 0.12 4.1E-06 47.8 4.5 25 204-228 47-71 (193)
350 1s96_A Guanylate kinase, GMP k 92.1 0.073 2.5E-06 50.7 3.0 24 204-227 15-38 (219)
351 2vhj_A Ntpase P4, P4; non- hyd 92.0 0.14 4.7E-06 51.3 5.0 52 205-261 123-181 (331)
352 1zd8_A GTP:AMP phosphotransfer 92.0 0.078 2.7E-06 50.8 3.2 24 204-227 6-29 (227)
353 4a74_A DNA repair and recombin 92.0 0.084 2.9E-06 50.5 3.4 24 204-227 24-47 (231)
354 3lnc_A Guanylate kinase, GMP k 91.9 0.051 1.7E-06 52.4 1.6 23 205-227 27-50 (231)
355 3dm5_A SRP54, signal recogniti 91.9 0.17 5.7E-06 53.4 5.6 24 204-227 99-122 (443)
356 3ake_A Cytidylate kinase; CMP 91.8 0.08 2.7E-06 49.8 3.0 21 207-227 4-24 (208)
357 2cbz_A Multidrug resistance-as 91.8 0.077 2.6E-06 51.3 2.9 23 205-227 31-53 (237)
358 2v3c_C SRP54, signal recogniti 91.8 0.099 3.4E-06 55.3 3.9 43 186-228 77-122 (432)
359 3e70_C DPA, signal recognition 91.8 0.1 3.5E-06 53.0 3.9 24 204-227 128-151 (328)
360 3end_A Light-independent proto 91.8 0.09 3.1E-06 53.1 3.5 26 202-227 38-63 (307)
361 1g8p_A Magnesium-chelatase 38 91.8 0.078 2.7E-06 54.6 3.1 45 177-227 23-67 (350)
362 2ehv_A Hypothetical protein PH 91.8 0.077 2.6E-06 51.6 2.9 24 204-227 29-52 (251)
363 3b85_A Phosphate starvation-in 91.8 0.067 2.3E-06 50.5 2.3 23 206-228 23-45 (208)
364 3gfo_A Cobalt import ATP-bindi 91.7 0.084 2.9E-06 52.2 3.0 23 205-227 34-56 (275)
365 2v9p_A Replication protein E1; 91.7 0.12 4.1E-06 51.8 4.1 37 204-246 125-161 (305)
366 2v54_A DTMP kinase, thymidylat 91.7 0.083 2.8E-06 49.6 2.9 23 205-227 4-26 (204)
367 1b0u_A Histidine permease; ABC 91.6 0.085 2.9E-06 51.8 3.0 24 204-227 31-54 (262)
368 1ji0_A ABC transporter; ATP bi 91.6 0.089 3E-06 50.9 3.0 23 205-227 32-54 (240)
369 2pze_A Cystic fibrosis transme 91.5 0.087 3E-06 50.6 2.9 23 205-227 34-56 (229)
370 1aky_A Adenylate kinase; ATP:A 91.5 0.094 3.2E-06 50.0 3.1 23 205-227 4-26 (220)
371 1mv5_A LMRA, multidrug resista 91.5 0.096 3.3E-06 50.8 3.2 24 204-227 27-50 (243)
372 1g6h_A High-affinity branched- 91.5 0.091 3.1E-06 51.5 3.0 23 205-227 33-55 (257)
373 4g1u_C Hemin import ATP-bindin 91.5 0.091 3.1E-06 51.7 3.0 23 205-227 37-59 (266)
374 2olj_A Amino acid ABC transpor 91.5 0.091 3.1E-06 51.6 3.0 24 204-227 49-72 (263)
375 1sgw_A Putative ABC transporte 91.5 0.078 2.7E-06 50.3 2.4 22 206-227 36-57 (214)
376 2d2e_A SUFC protein; ABC-ATPas 91.4 0.096 3.3E-06 51.1 3.1 23 205-227 29-51 (250)
377 3fb4_A Adenylate kinase; psych 91.4 0.094 3.2E-06 49.7 3.0 21 207-227 2-22 (216)
378 2j37_W Signal recognition part 91.4 0.18 6.2E-06 54.3 5.5 41 187-227 80-123 (504)
379 3d3q_A TRNA delta(2)-isopenten 91.4 0.097 3.3E-06 53.1 3.1 22 206-227 8-29 (340)
380 3r20_A Cytidylate kinase; stru 91.3 0.1 3.4E-06 50.1 3.0 23 205-227 9-31 (233)
381 2zu0_C Probable ATP-dependent 91.3 0.1 3.4E-06 51.5 3.1 23 205-227 46-68 (267)
382 1vpl_A ABC transporter, ATP-bi 91.3 0.099 3.4E-06 51.1 3.0 23 205-227 41-63 (256)
383 2ff7_A Alpha-hemolysin translo 91.3 0.1 3.4E-06 50.8 3.0 23 205-227 35-57 (247)
384 3be4_A Adenylate kinase; malar 91.3 0.092 3.1E-06 50.0 2.7 23 205-227 5-27 (217)
385 1zak_A Adenylate kinase; ATP:A 91.3 0.093 3.2E-06 50.1 2.8 24 204-227 4-27 (222)
386 2vp4_A Deoxynucleoside kinase; 91.2 0.11 3.8E-06 49.9 3.3 25 203-227 18-42 (230)
387 3dl0_A Adenylate kinase; phosp 91.2 0.1 3.6E-06 49.4 3.0 21 207-227 2-22 (216)
388 2qgz_A Helicase loader, putati 91.2 0.2 6.8E-06 50.5 5.2 40 186-228 136-175 (308)
389 2ixe_A Antigen peptide transpo 91.1 0.11 3.6E-06 51.4 3.0 24 204-227 44-67 (271)
390 2ghi_A Transport protein; mult 91.1 0.11 3.6E-06 51.1 3.0 23 205-227 46-68 (260)
391 2qi9_C Vitamin B12 import ATP- 91.1 0.11 3.7E-06 50.6 3.0 22 206-227 27-48 (249)
392 2yz2_A Putative ABC transporte 91.0 0.11 3.7E-06 51.2 3.0 23 205-227 33-55 (266)
393 3kl4_A SRP54, signal recogniti 90.9 0.21 7.2E-06 52.6 5.3 24 204-227 96-119 (433)
394 2nq2_C Hypothetical ABC transp 90.9 0.11 3.9E-06 50.6 3.0 23 205-227 31-53 (253)
395 2ihy_A ABC transporter, ATP-bi 90.9 0.11 3.9E-06 51.4 3.0 23 205-227 47-69 (279)
396 2eyu_A Twitching motility prot 90.8 0.16 5.6E-06 49.7 4.0 24 204-227 24-47 (261)
397 1cr0_A DNA primase/helicase; R 90.7 0.38 1.3E-05 48.1 6.8 54 204-261 34-88 (296)
398 1oix_A RAS-related protein RAB 90.7 0.13 4.3E-06 47.8 3.0 24 205-228 29-52 (191)
399 1q3t_A Cytidylate kinase; nucl 90.6 0.14 4.6E-06 49.5 3.3 25 203-227 14-38 (236)
400 1nij_A Hypothetical protein YJ 90.6 0.12 4.1E-06 52.4 3.0 25 204-228 3-27 (318)
401 2afh_E Nitrogenase iron protei 90.5 0.15 5.3E-06 50.8 3.7 23 205-227 2-24 (289)
402 2wji_A Ferrous iron transport 90.4 0.16 5.5E-06 45.6 3.4 23 206-228 4-26 (165)
403 1e4v_A Adenylate kinase; trans 90.4 0.14 4.9E-06 48.4 3.2 21 207-227 2-22 (214)
404 1ls1_A Signal recognition part 90.4 0.16 5.4E-06 50.9 3.6 24 204-227 97-120 (295)
405 3k1j_A LON protease, ATP-depen 90.3 0.18 6.2E-06 56.2 4.4 42 178-227 41-82 (604)
406 3umf_A Adenylate kinase; rossm 90.3 0.16 5.5E-06 48.1 3.4 25 203-227 27-51 (217)
407 1cp2_A CP2, nitrogenase iron p 90.3 0.16 5.4E-06 50.1 3.5 22 206-227 2-23 (269)
408 2dyk_A GTP-binding protein; GT 90.2 0.16 5.6E-06 45.1 3.3 23 206-228 2-24 (161)
409 2xb4_A Adenylate kinase; ATP-b 90.2 0.14 4.9E-06 48.8 3.0 21 207-227 2-22 (223)
410 1a7j_A Phosphoribulokinase; tr 90.2 0.081 2.8E-06 52.9 1.3 24 204-227 4-27 (290)
411 3nh6_A ATP-binding cassette SU 90.2 0.11 3.8E-06 52.1 2.3 24 204-227 79-102 (306)
412 2zej_A Dardarin, leucine-rich 90.2 0.14 4.7E-06 47.1 2.8 22 207-228 4-25 (184)
413 3sop_A Neuronal-specific septi 90.2 0.16 5.4E-06 50.1 3.3 21 207-227 4-24 (270)
414 1svm_A Large T antigen; AAA+ f 90.2 0.24 8.3E-06 51.2 4.9 24 204-227 168-191 (377)
415 4eaq_A DTMP kinase, thymidylat 90.1 0.33 1.1E-05 46.5 5.5 25 204-228 25-49 (229)
416 2ce2_X GTPase HRAS; signaling 90.0 0.15 5.2E-06 45.4 2.9 22 207-228 5-26 (166)
417 2pjz_A Hypothetical protein ST 90.0 0.15 5.2E-06 50.0 3.0 22 206-227 31-52 (263)
418 1ak2_A Adenylate kinase isoenz 89.9 0.17 5.9E-06 48.6 3.3 24 204-227 15-38 (233)
419 3crm_A TRNA delta(2)-isopenten 89.8 0.16 5.5E-06 51.1 3.1 22 206-227 6-27 (323)
420 1ltq_A Polynucleotide kinase; 89.8 0.16 5.6E-06 50.9 3.2 22 206-227 3-24 (301)
421 2bbs_A Cystic fibrosis transme 89.8 0.16 5.5E-06 50.6 3.0 24 204-227 63-86 (290)
422 2p67_A LAO/AO transport system 89.8 0.34 1.2E-05 49.6 5.7 24 204-227 55-78 (341)
423 1j8m_F SRP54, signal recogniti 89.8 0.24 8.1E-06 49.6 4.3 23 205-227 98-120 (297)
424 2w0m_A SSO2452; RECA, SSPF, un 89.7 0.15 5.3E-06 48.7 2.9 24 205-228 23-46 (235)
425 3pxi_A Negative regulator of g 89.7 0.34 1.2E-05 55.6 6.2 50 178-227 491-543 (758)
426 2f9l_A RAB11B, member RAS onco 89.6 0.16 5.3E-06 47.4 2.7 24 205-228 5-28 (199)
427 3con_A GTPase NRAS; structural 89.5 0.16 5.6E-06 46.7 2.7 23 206-228 22-44 (190)
428 3zvl_A Bifunctional polynucleo 89.5 0.18 6.1E-06 53.3 3.4 25 203-227 256-280 (416)
429 1pzn_A RAD51, DNA repair and r 89.5 0.35 1.2E-05 49.7 5.4 48 204-251 130-181 (349)
430 1svi_A GTP-binding protein YSX 89.5 0.25 8.6E-06 45.6 4.0 25 204-228 22-46 (195)
431 2wjg_A FEOB, ferrous iron tran 89.4 0.21 7.2E-06 45.8 3.4 24 205-228 7-30 (188)
432 1z2a_A RAS-related protein RAB 89.3 0.17 6E-06 45.2 2.7 24 205-228 5-28 (168)
433 3kta_A Chromosome segregation 89.3 0.21 7.2E-06 45.7 3.3 21 207-227 28-48 (182)
434 1tq4_A IIGP1, interferon-induc 89.2 0.22 7.6E-06 52.1 3.8 24 204-227 68-91 (413)
435 3ch4_B Pmkase, phosphomevalona 89.2 0.28 9.6E-06 45.5 4.0 24 204-227 10-33 (202)
436 2nzj_A GTP-binding protein REM 89.2 0.2 6.9E-06 45.2 3.1 24 205-228 4-27 (175)
437 2gj8_A MNME, tRNA modification 89.2 0.21 7.3E-06 45.2 3.2 23 206-228 5-27 (172)
438 3a8t_A Adenylate isopentenyltr 89.2 0.21 7.3E-06 50.4 3.4 24 204-227 39-62 (339)
439 1nlf_A Regulatory protein REPA 89.2 0.18 6.2E-06 50.0 2.9 23 205-227 30-52 (279)
440 2qtf_A Protein HFLX, GTP-bindi 89.1 0.47 1.6E-05 49.0 6.1 25 204-228 178-202 (364)
441 2z43_A DNA repair and recombin 89.1 0.44 1.5E-05 48.3 5.9 58 204-262 106-167 (324)
442 2qm8_A GTPase/ATPase; G protei 89.1 0.37 1.3E-05 49.2 5.2 24 204-227 54-77 (337)
443 2i1q_A DNA repair and recombin 89.1 0.45 1.5E-05 48.3 5.9 58 204-262 97-168 (322)
444 3tui_C Methionine import ATP-b 89.1 0.19 6.5E-06 51.6 3.0 24 204-227 53-76 (366)
445 3hr8_A Protein RECA; alpha and 89.0 0.5 1.7E-05 48.4 6.1 45 204-250 60-104 (356)
446 2ocp_A DGK, deoxyguanosine kin 89.0 0.23 7.9E-06 48.0 3.5 23 205-227 2-24 (241)
447 3q72_A GTP-binding protein RAD 88.8 0.21 7.3E-06 44.6 3.0 22 207-228 4-25 (166)
448 2lkc_A Translation initiation 88.8 0.27 9.3E-06 44.5 3.7 25 204-228 7-31 (178)
449 2zr9_A Protein RECA, recombina 88.8 0.45 1.5E-05 48.7 5.7 44 204-249 60-103 (349)
450 3fvq_A Fe(3+) IONS import ATP- 88.8 0.22 7.6E-06 51.0 3.3 23 205-227 30-52 (359)
451 1u8z_A RAS-related protein RAL 88.7 0.21 7E-06 44.7 2.7 23 206-228 5-27 (168)
452 1v5w_A DMC1, meiotic recombina 88.7 0.51 1.8E-05 48.3 6.0 57 204-261 121-181 (343)
453 3exa_A TRNA delta(2)-isopenten 88.7 0.22 7.7E-06 49.6 3.1 23 205-227 3-25 (322)
454 2www_A Methylmalonic aciduria 88.6 0.25 8.5E-06 50.8 3.6 24 204-227 73-96 (349)
455 2erx_A GTP-binding protein DI- 88.6 0.22 7.6E-06 44.7 3.0 22 207-228 5-26 (172)
456 2yv5_A YJEQ protein; hydrolase 88.6 0.31 1.1E-05 48.9 4.2 32 186-226 155-186 (302)
457 1c1y_A RAS-related protein RAP 88.5 0.21 7.3E-06 44.6 2.7 22 207-228 5-26 (167)
458 1f6b_A SAR1; gtpases, N-termin 88.5 0.22 7.6E-06 46.4 2.9 23 206-228 26-48 (198)
459 3pqc_A Probable GTP-binding pr 88.5 0.32 1.1E-05 44.8 4.0 25 204-228 22-46 (195)
460 2r6a_A DNAB helicase, replicat 88.5 6.2 0.00021 41.9 14.6 54 204-260 202-255 (454)
461 2aka_B Dynamin-1; fusion prote 88.5 0.54 1.8E-05 46.9 6.0 42 187-228 8-49 (299)
462 3lda_A DNA repair protein RAD5 88.4 0.55 1.9E-05 49.0 6.1 58 204-262 177-238 (400)
463 1m7b_A RND3/RHOE small GTP-bin 88.4 0.23 7.9E-06 45.5 2.9 24 205-228 7-30 (184)
464 3q85_A GTP-binding protein REM 88.4 0.24 8.2E-06 44.4 3.0 22 206-227 3-24 (169)
465 1z08_A RAS-related protein RAB 88.3 0.23 7.8E-06 44.6 2.7 24 205-228 6-29 (170)
466 1pgv_A TMD-1, tropomodulin TMD 88.3 0.32 1.1E-05 45.0 3.7 86 422-515 39-136 (197)
467 3t1o_A Gliding protein MGLA; G 88.3 0.21 7.3E-06 46.1 2.6 23 205-227 14-36 (198)
468 2qnr_A Septin-2, protein NEDD5 88.3 0.23 7.8E-06 49.9 2.9 22 205-227 19-40 (301)
469 1tue_A Replication protein E1; 88.2 0.37 1.3E-05 44.8 4.0 36 187-227 45-80 (212)
470 2fn4_A P23, RAS-related protei 88.1 0.25 8.4E-06 44.9 2.9 25 204-228 8-32 (181)
471 2cxx_A Probable GTP-binding pr 88.1 0.28 9.5E-06 45.0 3.3 22 207-228 3-24 (190)
472 3llu_A RAS-related GTP-binding 88.1 0.27 9.4E-06 45.6 3.2 23 205-227 20-42 (196)
473 3tw8_B RAS-related protein RAB 88.1 0.24 8.2E-06 44.9 2.8 25 204-228 8-32 (181)
474 1u94_A RECA protein, recombina 88.1 0.51 1.7E-05 48.4 5.5 45 204-250 62-106 (356)
475 1z47_A CYSA, putative ABC-tran 88.1 0.25 8.5E-06 50.6 3.1 23 205-227 41-63 (355)
476 1z0j_A RAB-22, RAS-related pro 88.0 0.24 8.3E-06 44.3 2.7 23 206-228 7-29 (170)
477 1lw7_A Transcriptional regulat 88.0 0.25 8.6E-06 51.2 3.1 23 205-227 170-192 (365)
478 1ek0_A Protein (GTP-binding pr 88.0 0.25 8.4E-06 44.3 2.7 22 207-228 5-26 (170)
479 1fzq_A ADP-ribosylation factor 87.9 0.36 1.2E-05 44.1 3.9 25 204-228 15-39 (181)
480 1nrj_B SR-beta, signal recogni 87.9 0.29 9.8E-06 46.3 3.3 25 204-228 11-35 (218)
481 4edh_A DTMP kinase, thymidylat 87.8 0.88 3E-05 42.9 6.6 23 205-227 6-28 (213)
482 3bh0_A DNAB-like replicative h 87.8 0.66 2.3E-05 46.8 6.1 55 204-262 67-121 (315)
483 3ihw_A Centg3; RAS, centaurin, 87.8 0.25 8.7E-06 45.3 2.8 24 205-228 20-43 (184)
484 1kao_A RAP2A; GTP-binding prot 87.7 0.26 8.8E-06 43.9 2.7 22 207-228 5-26 (167)
485 2hxs_A RAB-26, RAS-related pro 87.7 0.29 9.9E-06 44.3 3.1 24 205-228 6-29 (178)
486 1ky3_A GTP-binding protein YPT 87.7 0.26 8.9E-06 44.8 2.7 25 204-228 7-31 (182)
487 3cr8_A Sulfate adenylyltranfer 87.6 0.24 8.2E-06 54.1 2.8 24 204-227 368-391 (552)
488 3ld9_A DTMP kinase, thymidylat 87.6 0.94 3.2E-05 42.9 6.6 25 204-228 20-44 (223)
489 3c5c_A RAS-like protein 12; GD 87.6 0.26 8.9E-06 45.3 2.7 24 205-228 21-44 (187)
490 1pui_A ENGB, probable GTP-bind 87.6 0.21 7.2E-06 46.9 2.1 25 204-228 25-49 (210)
491 1pgv_A TMD-1, tropomodulin TMD 87.6 0.66 2.3E-05 42.9 5.4 88 443-539 33-136 (197)
492 2h92_A Cytidylate kinase; ross 87.6 0.23 7.9E-06 47.1 2.4 22 206-227 4-25 (219)
493 2dr3_A UPF0273 protein PH0284; 87.6 0.47 1.6E-05 45.7 4.7 48 204-255 22-69 (247)
494 2e87_A Hypothetical protein PH 87.6 3.8 0.00013 41.9 11.9 25 204-228 166-190 (357)
495 3rlf_A Maltose/maltodextrin im 87.5 0.27 9.3E-06 50.8 3.0 23 205-227 29-51 (381)
496 4dzz_A Plasmid partitioning pr 87.5 0.59 2E-05 43.6 5.2 22 206-227 2-24 (206)
497 1r6b_X CLPA protein; AAA+, N-t 87.5 0.33 1.1E-05 55.8 4.1 50 178-227 458-510 (758)
498 1g16_A RAS-related protein SEC 87.5 0.29 9.8E-06 43.9 2.9 23 206-228 4-26 (170)
499 2yyz_A Sugar ABC transporter, 87.5 0.28 9.7E-06 50.3 3.1 23 205-227 29-51 (359)
500 2qu8_A Putative nucleolar GTP- 87.5 0.39 1.3E-05 45.8 3.9 25 204-228 28-52 (228)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=8e-30 Score=285.11 Aligned_cols=188 Identities=19% Similarity=0.322 Sum_probs=156.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc--chhhhccccceeeeecCCCc--cHHHHHHHH
Q 036753 181 FGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN--NDDVKKHFDERIWVCVSEPF--DEFRIARAV 256 (725)
Q Consensus 181 vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i 256 (725)
|||+.++++|+++|.... ++.++||+||||||+||||||+.||+ +.+++.+|++++||+|++.+ ++..+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997642 34689999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHhcCCCC---------C-----------------C---------------h---------------------------
Q 036753 257 IEALKSGDA---------S-----------------N---------------F--------------------------- 268 (725)
Q Consensus 257 ~~~l~~~~~---------~-----------------~---------------W--------------------------- 268 (725)
+.++..... . . |
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~ 287 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEF 287 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeE
Confidence 998875410 0 0 1
Q ss_pred ---------------------------------------------------------------------hhhhhhhhhhh
Q 036753 269 ---------------------------------------------------------------------EAIEKGLLAPL 279 (725)
Q Consensus 269 ---------------------------------------------------------------------~~~~~~i~~~L 279 (725)
......+.++|
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l 367 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECIT 367 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCS
T ss_pred EECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHH
Confidence 00224577889
Q ss_pred hhcccCCchhhhhhhh-----------hcccCCCCCccCHHHHHHHHHHc--CCcccCC-CccHHHHHHHHHHHHHhCCC
Q 036753 280 LLSYNELPSKVKRCFS-----------YCAVFPKDYGIRKHKLIELWMAQ--GYLSEKG-AKEMEDIGEEYFNILASRSF 345 (725)
Q Consensus 280 ~lSy~~L~~~lk~cfl-----------~~~~Fp~~~~i~~~~Li~~Wia~--g~i~~~~-~~~~e~~~~~~~~~L~~~~l 345 (725)
++||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +.+++++++ ||++|+++||
T Consensus 368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsL 442 (549)
T 2a5y_B 368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGA 442 (549)
T ss_dssp SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSS
T ss_pred hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCC
Confidence 9999999999999999 999999999999 8999999 9998776 677899998 9999999999
Q ss_pred cccccCCCCCceeEeecchhHHHHHHHhhcccce
Q 036753 346 FQDFDKGDDGEIYKCKMHDIVHDFAQYLCRNECL 379 (725)
Q Consensus 346 l~~~~~~~~~~~~~~~mhdl~~dla~~i~~~e~~ 379 (725)
++....+ ...+|+|||++|++|++++.++++
T Consensus 443 l~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 443 LLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 9987653 345799999999999999988764
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2e-23 Score=216.80 Aligned_cols=258 Identities=18% Similarity=0.180 Sum_probs=168.0
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCc-cccccccccccccCccccEEEeecCCCccccchhhh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPR-NSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLC 502 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~ 502 (725)
.+++.|.+.++.+.... .+|..+.++++|++|+|+ + +.+...+|..++++++|++|++++|.....+|..++
T Consensus 50 ~~l~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~L~------~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIG------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEEE------EETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCc-ccChhHhCCCCCCeeeCC------CCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 35566666666543210 145556666666666666 4 443345666666666666666666662225666666
Q ss_pred cCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCc-cCcccCeEEEcCcCCCccCccccccCCC
Q 036753 503 ELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI-RLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 503 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|++|++..+......+ ..+..++
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~---~~~~~l~- 198 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP---PTFANLN- 198 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC---GGGGGCC-
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC---hHHhCCc-
Confidence 666666666666663335666666666666666666644345666666665 66666665544332112 2233343
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRG 661 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 661 (725)
|+.|++..... .......+..+++|+.|+|++|.++.. +..+..+++|++|+|++|.+
T Consensus 199 L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 199 LAFVDLSRNML----EGDASVLFGSDKNTQKIHLAKNSLAFD------------------LGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CSEEECCSSEE----EECCGGGCCTTSCCSEEECCSSEECCB------------------GGGCCCCTTCCEEECCSSCC
T ss_pred ccEEECcCCcc----cCcCCHHHhcCCCCCEEECCCCceeee------------------cCcccccCCCCEEECcCCcc
Confidence 66666654221 112335567888999999999874221 22366789999999999998
Q ss_pred CCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeecccccCceEeCc
Q 036753 662 RRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKRVGN 716 (725)
Q Consensus 662 ~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~i~~ 716 (725)
... + |.++..+++|++|+|++|...+.+|..+.+++|+.|++.+|+.+...|.
T Consensus 257 ~~~-~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 257 YGT-L-PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp EEC-C-CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred cCc-C-ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCC
Confidence 742 5 8999999999999999997767899999999999999999997765543
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.7e-22 Score=209.54 Aligned_cols=222 Identities=23% Similarity=0.237 Sum_probs=143.4
Q ss_pred CCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCC
Q 036753 450 LTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLR 529 (725)
Q Consensus 450 l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 529 (725)
...++.|+|+ ++. +..+|..++++++|++|+|++|. +..+|..++++++|++|++++|. +..+|..+++++
T Consensus 80 ~~~l~~L~L~------~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELR------SVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEE------SSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred ccceeEEEcc------CCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 3556666666 555 55666666666666666666665 55666666666666666666665 446666666666
Q ss_pred cCcEEecCCCcccccCCcccCC---------CccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhh
Q 036753 530 KLMYLHNEDTGCLRYLPAGIGE---------LIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAA 600 (725)
Q Consensus 530 ~L~~L~l~~~~~~~~lp~~i~~---------l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~ 600 (725)
+|++|++++|.....+|..++. +++|++|++.++.... ....+.++++|+.|++.+.... ..
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----lp~~l~~l~~L~~L~L~~N~l~-----~l 221 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS----LPASIANLQNLKSLKIRNSPLS-----AL 221 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC----CCGGGGGCTTCCEEEEESSCCC-----CC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc----chHhhcCCCCCCEEEccCCCCC-----cC
Confidence 6666666665555555555443 6666666666554432 1123455556666666553321 12
Q ss_pred hhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCcccccee
Q 036753 601 RAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDL 680 (725)
Q Consensus 601 ~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L 680 (725)
...+..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|..... + |.++..+++|++|
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~-----------------~~p~~~~~l~~L~~L~L~~n~~~~~-~-p~~~~~l~~L~~L 282 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALR-----------------NYPPIFGGRAPLKRLILKDCSNLLT-L-PLDIHRLTQLEKL 282 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCC-----------------BCCCCTTCCCCCCEEECTTCTTCCB-C-CTTGGGCTTCCEE
T ss_pred chhhccCCCCCEEECcCCcchh-----------------hhHHHhcCCCCCCEEECCCCCchhh-c-chhhhcCCCCCEE
Confidence 2346677788888888876322 2334567788899999988876663 4 7788888999999
Q ss_pred EEcCCCCCCcCCC-CCCccccceeecccc
Q 036753 681 SLFWWSNCEHLPP-LGKLKSLESLLIYGM 708 (725)
Q Consensus 681 ~L~~c~~~~~lp~-l~~lp~L~~L~L~~~ 708 (725)
+|++|...+.+|. ++.|++|+.+.+...
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999888888887 888888888888754
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=215.74 Aligned_cols=282 Identities=21% Similarity=0.168 Sum_probs=187.5
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+..++.. .+.++++|+.|.+++|.+... .|..|.++++|++|+|+ +|. +..+|..
T Consensus 32 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~ 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD---EFASFPHLEELELNENIVSAV---EPGAFNNLFNLRTLGLR------SNR-LKLIPLG 98 (477)
T ss_dssp TTCSEEECCSSCCCEECTT---TTTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECC------SSC-CCSCCTT
T ss_pred CCCcEEECCCCccceECHh---HccCCCCCCEEECCCCccCEe---ChhhhhCCccCCEEECC------CCc-CCccCcc
Confidence 5788888888877654332 234889999999999876543 46678899999999998 887 7777654
Q ss_pred -cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCc-ccCCCcc
Q 036753 477 -IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIR 554 (725)
Q Consensus 477 -i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~ 554 (725)
++++++|++|+|++|......|..+.++++|++|++++|......|..+..+++|++|++++| .+..+|. .+..+++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCC
Confidence 688999999999999833344668899999999999998844445667889999999999988 4455554 4788899
Q ss_pred CcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCC
Q 036753 555 LRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENE 634 (725)
Q Consensus 555 L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 634 (725)
|+.|++..+......+ ..+..+++|+.|++..+...... ........+|+.|+|++|.++...
T Consensus 178 L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~---------- 240 (477)
T 2id5_A 178 LIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTAVP---------- 240 (477)
T ss_dssp CCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCSCC----------
T ss_pred CcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCcccccC----------
Confidence 9999887766543222 34566777888888765433221 122223347777777777643221
Q ss_pred chhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeecccccCceE
Q 036753 635 EDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQSVKR 713 (725)
Q Consensus 635 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~ 713 (725)
...+..+++|+.|+|++|.+.. +++.++..+++|+.|+|++|......|. +..+++|+.|+|++|. +..
T Consensus 241 -------~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 310 (477)
T 2id5_A 241 -------YLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTT 310 (477)
T ss_dssp -------HHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSC
T ss_pred -------HHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-Cce
Confidence 1234455666666666665554 4344555566666666666532222222 5556666666666553 555
Q ss_pred eCcccc
Q 036753 714 VGNELS 719 (725)
Q Consensus 714 i~~~~~ 719 (725)
++...|
T Consensus 311 ~~~~~~ 316 (477)
T 2id5_A 311 LEESVF 316 (477)
T ss_dssp CCGGGB
T ss_pred eCHhHc
Confidence 555443
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.3e-21 Score=227.24 Aligned_cols=297 Identities=16% Similarity=0.142 Sum_probs=192.1
Q ss_pred ceeEEEeeeecCCC-CcccccccCCCCcccccEEEeccCC-ccccccchhHHhhcCC-------cceEEEeccccCCCcc
Q 036753 397 KKILHLPLTLRRGA-SVPISIWGNVTGLRGLRSLLVKSDE-YSWSSEGLPQLFEKLT-------CLRALELQVRESWPRN 467 (725)
Q Consensus 397 ~~~r~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~-------~Lr~L~L~~~~~~~~~ 467 (725)
.+++.|.+..+... .+|..+ .++++|+.|.+++|. ++. ..+|..+.+++ +|++|+|+ +|
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l----~~L~~L~~L~Ls~N~~lsg--~~iP~~i~~L~~~~~~l~~L~~L~Ls------~N 558 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFL----YDLPELQSLNIACNRGISA--AQLKADWTRLADDEDTGPKIQIFYMG------YN 558 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGG----GGCSSCCEEECTTCTTSCH--HHHHHHHHHHHHCTTTTTTCCEEECC------SS
T ss_pred CCCCEEECcCCCCCccChHHH----hCCCCCCEEECcCCCCccc--ccchHHHHhhhhcccccCCccEEEee------CC
Confidence 57888888777643 244333 388889999998886 542 02565555554 88888888 78
Q ss_pred cccccccc--ccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCc-CcEEecCCCccccc
Q 036753 468 SLIKEIPT--NIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRK-LMYLHNEDTGCLRY 544 (725)
Q Consensus 468 ~~~~~lp~--~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~ 544 (725)
. +..+|. .++++++|++|+|++|. +..+| .++++++|++|++++|. +..+|..+.++++ |++|++++|. +..
T Consensus 559 ~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~ 633 (876)
T 4ecn_A 559 N-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKY 633 (876)
T ss_dssp C-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCS
T ss_pred c-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCc
Confidence 7 668888 88888889999988888 67888 78888888888888888 5688888888888 8888888884 557
Q ss_pred CCcccCCCcc--CcccCeEEEcCcCCCccCccccc--cCCCCCceEEeCcCCCCChhhhhhhc-cccccccCcEEEEecC
Q 036753 545 LPAGIGELIR--LRRVREFVVGGGYDRACSLGSLK--KLNFLQQCGIRGLGGVSDAGEAARAE-LEKKKYLLKLGLHFDR 619 (725)
Q Consensus 545 lp~~i~~l~~--L~~L~~~~~~~~~~~~~~~~~L~--~L~~L~~L~i~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~ 619 (725)
+|..++.+.. |+.|++..+......+.....+. .+.+|+.|++...... . ++.. +..+++|+.|+|+.|.
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~----lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-K----FPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-S----CCHHHHHTTCCCSEEECCSCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-c----cCHHHHccCCCCCEEECCCCc
Confidence 7877766544 77777766654431111111111 1224444444442211 0 1111 1234455555555554
Q ss_pred CCCCCccc-------------ccCCCCCchhHHHHhhhcC--CCCCCCcEEEeeecCCCCCcccccccCccccceeEEcC
Q 036753 620 IRDGDEEQ-------------AGRRENEEDEDERLLEALG--PPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFW 684 (725)
Q Consensus 620 l~~~~~~~-------------~~~~~~~~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~ 684 (725)
++...... +............++..+. .+++|+.|+|++|.+.. + |.++..+++|+.|+|++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~--l-p~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS--F-PTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS--C-CCGGGGCTTCCEEECCC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc--c-chhhhcCCCCCEEECCC
Confidence 43211100 0000000000113445554 78889999999988887 7 77888889999998876
Q ss_pred ------CCCCCcCCC-CCCccccceeecccccCceEeCcccc
Q 036753 685 ------WSNCEHLPP-LGKLKSLESLLIYGMQSVKRVGNELS 719 (725)
Q Consensus 685 ------c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~~~~~ 719 (725)
|...+.+|. ++.+++|+.|+|++|. +..||..++
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~ 826 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT 826 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc
Confidence 444556775 8888899999998887 588888765
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.86 E-value=5.2e-22 Score=224.79 Aligned_cols=172 Identities=18% Similarity=0.099 Sum_probs=139.4
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccc-eeeeecCCCccHHHHHHHHHH
Q 036753 180 IFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDE-RIWVCVSEPFDEFRIARAVIE 258 (725)
Q Consensus 180 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~i~~ 258 (725)
.|||+.++++|.++|.... ..+||+|+||||+||||||+++|++.+++.+|+. ++||+|++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997532 4789999999999999999999998889999997 899999999988777666655
Q ss_pred HhcCC--------C------------------------CCC--------h------------------------------
Q 036753 259 ALKSG--------D------------------------ASN--------F------------------------------ 268 (725)
Q Consensus 259 ~l~~~--------~------------------------~~~--------W------------------------------ 268 (725)
.+... + ... |
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~ 284 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHH
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCC
Confidence 32100 0 000 1
Q ss_pred -----------------------------------------------------hh-----------hhhhhhhhhhhccc
Q 036753 269 -----------------------------------------------------EA-----------IEKGLLAPLLLSYN 284 (725)
Q Consensus 269 -----------------------------------------------------~~-----------~~~~i~~~L~lSy~ 284 (725)
.. ....+..+|++||+
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd 364 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHH
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHH
Confidence 00 01346788999999
Q ss_pred CCchhh-hhhhhhcccCCCCCccCHHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHHhCCCcccccCCCCCceeEeecc
Q 036753 285 ELPSKV-KRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDFDKGDDGEIYKCKMH 363 (725)
Q Consensus 285 ~L~~~l-k~cfl~~~~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mh 363 (725)
.||+++ |.||+|||+||+++.|.++.++.+|+++| ++.++.++++|+++||++... ....|+||
T Consensus 365 ~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMH 429 (1221)
T 1vt4_I 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQP-----KESTISIP 429 (1221)
T ss_dssp HSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCC
T ss_pred hCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEeh
Confidence 999999 99999999999999999999999999987 135889999999999999842 12368999
Q ss_pred hhHHHHHH
Q 036753 364 DIVHDFAQ 371 (725)
Q Consensus 364 dl~~dla~ 371 (725)
|++++++.
T Consensus 430 DLllELr~ 437 (1221)
T 1vt4_I 430 SIYLELKV 437 (1221)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999763
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=9.2e-22 Score=224.50 Aligned_cols=298 Identities=14% Similarity=0.147 Sum_probs=197.2
Q ss_pred ceeEEEeeeecCCCC-cccccccCCCCcccccEEEeccCC-ccccccchhHHhhcC------CcceEEEeccccCCCccc
Q 036753 397 KKILHLPLTLRRGAS-VPISIWGNVTGLRGLRSLLVKSDE-YSWSSEGLPQLFEKL------TCLRALELQVRESWPRNS 468 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l------~~Lr~L~L~~~~~~~~~~ 468 (725)
.++++|.+..+.... +|. .+.++++|+.|.+++|. ++.. .+|..+..+ ++|++|+++ +|.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~l~~~--~lp~~~~~L~~~~~l~~L~~L~L~------~n~ 316 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPT----FLKALPEMQLINVACNRGISGE--QLKDDWQALADAPVGEKIQIIYIG------YNN 316 (636)
T ss_dssp TTCCEEEEECCTTCSSCCT----TTTTCSSCCEEECTTCTTSCHH--HHHHHHHHHHHSGGGGTCCEEECC------SSC
T ss_pred CCCCEEEecCCcCCccChH----HHhcCCCCCEEECcCCCCCccc--cchHHHHhhhccccCCCCCEEECC------CCc
Confidence 578888888776432 333 34488899999999887 5420 266666665 888888888 777
Q ss_pred ccccccc--ccccCccccEEEeecCCCcc-ccchhhhcCCCCcEeecCCCcccccccccccCCCc-CcEEecCCCccccc
Q 036753 469 LIKEIPT--NIEKLLHLKYLNLKGQKKIE-NLPETLCELYNLECLNVDDCQNLRELPRGIGKLRK-LMYLHNEDTGCLRY 544 (725)
Q Consensus 469 ~~~~lp~--~i~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~ 544 (725)
+..+|. .++++++|++|++++|. +. .+| .++++++|++|++++|. +..+|..+..+++ |++|++++|. +..
T Consensus 317 -l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~ 391 (636)
T 4eco_A 317 -LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKY 391 (636)
T ss_dssp -CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSS
T ss_pred -CCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-Ccc
Confidence 668888 78888888888888888 65 888 78888888888888887 6688888888888 8888888884 457
Q ss_pred CCcccCCCc--cCcccCeEEEcCcCCCccCcccc----ccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEec
Q 036753 545 LPAGIGELI--RLRRVREFVVGGGYDRACSLGSL----KKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFD 618 (725)
Q Consensus 545 lp~~i~~l~--~L~~L~~~~~~~~~~~~~~~~~L----~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 618 (725)
+|..++.+. +|++|++..+......+..+... -.+.+|+.|++....-. ... ...+..+++|+.|+|++|
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp---~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFP---KELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCC---THHHHTTCCCSEEECCSS
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCC---HHHHccCCCCCEEECCCC
Confidence 787766654 77777776665543222222200 03445555555543221 100 011223455566666555
Q ss_pred CCCCCCcc-------------cccCCCCCchhHHHHhhhcC--CCCCCCcEEEeeecCCCCCcccccccCccccceeEEc
Q 036753 619 RIRDGDEE-------------QAGRRENEEDEDERLLEALG--PPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLF 683 (725)
Q Consensus 619 ~l~~~~~~-------------~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~ 683 (725)
.++..... .+............++..+. .+++|+.|+|++|.+.. + |.++..+++|+.|+|+
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~--i-p~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--F-PTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS--C-CCGGGGCSSCCEEECC
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC--c-ChhhhcCCCCCEEECC
Confidence 54422111 00000000000113445555 78899999999998887 7 8888889999999995
Q ss_pred C------CCCCCcCCC-CCCccccceeecccccCceEeCcccc
Q 036753 684 W------WSNCEHLPP-LGKLKSLESLLIYGMQSVKRVGNELS 719 (725)
Q Consensus 684 ~------c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~~~~~ 719 (725)
+ |...+.+|. ++.+++|+.|+|++|. +..||..++
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~ 586 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT 586 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh
Confidence 4 444567776 8889999999999888 588888765
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=3.4e-22 Score=228.09 Aligned_cols=255 Identities=12% Similarity=0.104 Sum_probs=177.1
Q ss_pred hhHHhhcCCcceEEEeccccCCCccccccc------------------cccccc--cCccccEEEeecCCCccccchhhh
Q 036753 443 LPQLFEKLTCLRALELQVRESWPRNSLIKE------------------IPTNIE--KLLHLKYLNLKGQKKIENLPETLC 502 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~------------------lp~~i~--~l~~Lr~L~L~~~~~i~~lp~~i~ 502 (725)
+|..+.++++|++|+|+ +|. +.. +|..++ ++++|++|++++|.....+|..++
T Consensus 198 ip~~l~~l~~L~~L~Ls------~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMG------NSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEE------SCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCHHHhcccCCCEEECc------CCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 67778889999999998 887 555 888888 999999999999987778898899
Q ss_pred cCCCCcEeecCCCc-ccc-cccccccCC------CcCcEEecCCCcccccCCc--ccCCCccCcccCeEEEcCcCCCccC
Q 036753 503 ELYNLECLNVDDCQ-NLR-ELPRGIGKL------RKLMYLHNEDTGCLRYLPA--GIGELIRLRRVREFVVGGGYDRACS 572 (725)
Q Consensus 503 ~L~~L~~L~l~~~~-~l~-~lp~~i~~L------~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~ 572 (725)
++++|++|++++|. ... .+|..++++ ++|++|++++|. +..+|. .++++++|++|++.++......+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence 99999999999987 444 688888876 899999998884 458888 88889999998887766552122
Q ss_pred ccccccCCCCCceEEeCcCCCCChhhhhhhccccccc-cCcEEEEecCCCCCCcccccC---------CCCCchhHHHHh
Q 036753 573 LGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKY-LLKLGLHFDRIRDGDEEQAGR---------RENEEDEDERLL 642 (725)
Q Consensus 573 ~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~l~~~~~~~~~~---------~~~~~~~~~~~~ 642 (725)
.+..+++|+.|++..... ..++..+..+++ |+.|++++|.++.... .+.. ...........+
T Consensus 348 --~~~~l~~L~~L~L~~N~l-----~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 348 --AFGSEIKLASLNLAYNQI-----TEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp --CCEEEEEESEEECCSSEE-----EECCTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred --hhCCCCCCCEEECCCCcc-----ccccHhhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcch
Confidence 455566666666655321 123344666777 7777777776542211 1000 000001111222
Q ss_pred hhcC-------CCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CC-------Cccccceeecc
Q 036753 643 EALG-------PPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LG-------KLKSLESLLIY 706 (725)
Q Consensus 643 ~~l~-------~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~-------~lp~L~~L~L~ 706 (725)
..+. .+++|+.|+|++|.+.. +++..+..+++|++|+|++|. +..+|. +. .+++|+.|+|+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred hhhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECc
Confidence 3344 55688888888888876 734444568888888888884 447765 22 23388899998
Q ss_pred cccCceEeCcccc
Q 036753 707 GMQSVKRVGNELS 719 (725)
Q Consensus 707 ~~~~l~~i~~~~~ 719 (725)
+|. +..+|..++
T Consensus 497 ~N~-l~~lp~~~~ 508 (636)
T 4eco_A 497 FNK-LTKLSDDFR 508 (636)
T ss_dssp SSC-CCBCCGGGS
T ss_pred CCc-CCccChhhh
Confidence 886 778888776
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1e-21 Score=229.30 Aligned_cols=267 Identities=18% Similarity=0.178 Sum_probs=159.2
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
++++|+.|.+.+|.+.. ..|..+..+++|++|+++ +|.+...+|..++.+++|++|++++|.....+|..+
T Consensus 416 ~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~L~------~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSG---TIPSSLGSLSKLRDLKLW------LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp GCTTCCEEECCSSEEES---CCCGGGGGCTTCCEEECC------SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCCCCCEEECcCCcccC---cccHHHhcCCCCCEEECC------CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 55556666665554322 244455556666666665 555333455556666666666666665333555556
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
+++++|++|++++|.....+|..++.+++|++|++++|.....+|..++.+++|+.|++.++......+..+.....+..
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 66666666666666544455656666666666666666544455555666666666655544433212221111111110
Q ss_pred CCc------eEEeCcC---------------CC------------------CChhhhhhhccccccccCcEEEEecCCCC
Q 036753 582 LQQ------CGIRGLG---------------GV------------------SDAGEAARAELEKKKYLLKLGLHFDRIRD 622 (725)
Q Consensus 582 L~~------L~i~~~~---------------~~------------------~~~~~~~~~~l~~~~~L~~L~L~~~~l~~ 622 (725)
+.. ..+.... .. .......+..+..+++|+.|+|++|.+++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 000 0000000 00 00001112345567889999999998543
Q ss_pred CCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccc
Q 036753 623 GDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLE 701 (725)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~ 701 (725)
. ++..+..+++|+.|+|++|.+... + |..++.+++|+.|+|++|...+.+|. ++.+++|+
T Consensus 647 ~-----------------ip~~l~~l~~L~~L~Ls~N~l~g~-i-p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 647 Y-----------------IPKEIGSMPYLFILNLGHNDISGS-I-PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp C-----------------CCGGGGGCTTCCEEECCSSCCCSC-C-CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred c-----------------CCHHHhccccCCEEeCcCCccCCC-C-ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 3 345677889999999999998753 5 88999999999999999977778887 89999999
Q ss_pred eeecccccCceEeCc
Q 036753 702 SLLIYGMQSVKRVGN 716 (725)
Q Consensus 702 ~L~L~~~~~l~~i~~ 716 (725)
+|++++|+--..||.
T Consensus 708 ~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPE 722 (768)
T ss_dssp EEECCSSEEEEECCS
T ss_pred EEECcCCcccccCCC
Confidence 999999985566764
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=6.9e-21 Score=210.29 Aligned_cols=258 Identities=19% Similarity=0.145 Sum_probs=203.5
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchh-h
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPET-L 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i 501 (725)
++++.|++++|.+... .+..|.++++|++|+|+ +|. +..+ |..++++++|++|+|++|. +..+|.. +
T Consensus 32 ~~l~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~------~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL---NQDEFASFPHLEELELN------ENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF 100 (477)
T ss_dssp TTCSEEECCSSCCCEE---CTTTTTTCTTCCEEECT------TSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred CCCcEEECCCCccceE---CHhHccCCCCCCEEECC------CCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence 5899999999987543 45679999999999999 888 5554 7889999999999999999 8888864 7
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
.++++|++|++++|......|..+.++++|++|++++|......|..+..+++|++|++..+.... .....+..+++
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~ 177 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---IPTEALSHLHG 177 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---CCHHHHTTCTT
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---cChhHhcccCC
Confidence 899999999999999555567789999999999999996555556679999999999998776543 12234678888
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRG 661 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 661 (725)
|+.|++...... ......+..+++|+.|+++.+.+.+ .++.......+|++|+|++|.+
T Consensus 178 L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 178 LIVLRLRHLNIN----AIRDYSFKRLYRLKVLEISHWPYLD-----------------TMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp CCEEEEESCCCC----EECTTCSCSCTTCCEEEEECCTTCC-----------------EECTTTTTTCCCSEEEEESSCC
T ss_pred CcEEeCCCCcCc----EeChhhcccCcccceeeCCCCcccc-----------------ccCcccccCccccEEECcCCcc
Confidence 999988874321 1223457788999999999886311 1222333455999999999998
Q ss_pred CCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeecccccCceEeCccccC
Q 036753 662 RRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQSVKRVGNELSE 720 (725)
Q Consensus 662 ~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~~l~~i~~~~~~ 720 (725)
.. +++..+..+++|+.|+|++|. +..++. +..+++|+.|+|.+|. +..+++..|+
T Consensus 237 ~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 293 (477)
T 2id5_A 237 TA--VPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFR 293 (477)
T ss_dssp CS--CCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBT
T ss_pred cc--cCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCc-cceECHHHhc
Confidence 87 744678899999999999995 555554 8899999999999987 7777655543
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=8e-22 Score=216.51 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=106.4
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.++++|.+..+.+...+. ..+.++++|++|.+.+|.+... ..+..|.++++|++|+|+ +|.+....|..
T Consensus 30 ~~l~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~~~~~--i~~~~~~~l~~L~~L~Ls------~n~l~~~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE---TSFSRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKLD------YNQFLQLETGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEECT---TTTSSCTTCCEEECCCCSTTCE--ECTTTTTTCTTCCEEECT------TCTTCEECTTT
T ss_pred CccCEEEecCCccCcCCh---hHhccCccccEEECcCCcccce--ECcccccccccCCEEeCC------CCccCccChhh
Confidence 688999998887764422 2334899999999999875321 125568889999999999 88833344778
Q ss_pred cccCccccEEEeecCCCccc-cchh--hhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcccCCC
Q 036753 477 IEKLLHLKYLNLKGQKKIEN-LPET--LCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGEL 552 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~l 552 (725)
++++++|++|++++|. +.. .|.. ++++++|++|++++|......|.. +.++++|++|++++|......|..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 99 FNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred ccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 9999999999999998 553 5554 889999999999999843444655 7889999999999885544444444433
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.85 E-value=2.6e-21 Score=239.28 Aligned_cols=184 Identities=18% Similarity=0.258 Sum_probs=144.9
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhh-hcccc-ceeeeecCCCcc--HHH
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDV-KKHFD-ERIWVCVSEPFD--EFR 251 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~vs~~~~--~~~ 251 (725)
....+|||+.++++|.++|.... ++.++|+|+||||+||||||+++|++.++ ..+|. .+.||++++.++ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34569999999999999997643 37899999999999999999999998654 45564 566999998543 344
Q ss_pred HHHHHHHHhcCCCCC------------------------C--------h-------------------------------
Q 036753 252 IARAVIEALKSGDAS------------------------N--------F------------------------------- 268 (725)
Q Consensus 252 l~~~i~~~l~~~~~~------------------------~--------W------------------------------- 268 (725)
.+..++..+...... . |
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCB
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCc
Confidence 455555555432100 0 1
Q ss_pred --------------------------------------------------------------------------------
Q 036753 269 -------------------------------------------------------------------------------- 268 (725)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (725)
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 357 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSS 357 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTT
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhccccc
Confidence
Q ss_pred hhhhhhhhhhhhhcccCCchhhhhhhhhcccCCCCCccCHHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHHhCCCccc
Q 036753 269 EAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQD 348 (725)
Q Consensus 269 ~~~~~~i~~~L~lSy~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~ 348 (725)
......+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++.
T Consensus 358 ~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 358 SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp CTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEE
T ss_pred ccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEE
Confidence 00113478899999999999999999999999999999999999999664 4678899999999999997
Q ss_pred ccCCCCCceeEeecchhHHHHHHHhhccc
Q 036753 349 FDKGDDGEIYKCKMHDIVHDFAQYLCRNE 377 (725)
Q Consensus 349 ~~~~~~~~~~~~~mhdl~~dla~~i~~~e 377 (725)
... ++..+|+|||++|++++..+.++
T Consensus 427 ~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred ecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 543 44567999999999999987765
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.5e-21 Score=228.03 Aligned_cols=283 Identities=17% Similarity=0.204 Sum_probs=219.9
Q ss_pred ceeEEEeeeecCCCC-cccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc
Q 036753 397 KKILHLPLTLRRGAS-VPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~ 475 (725)
..++.|.+..+.... .|.. +.++++|+.|.+.+|.+.. .+|..+..+++|++|+++ +|.+...+|.
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~------~N~l~~~~p~ 484 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEG---EIPQELMYVKTLETLILD------FNDLTGEIPS 484 (768)
T ss_dssp TTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECC------SSCCCSCCCG
T ss_pred CCCCEEECcCCcccCcccHH----HhcCCCCCEEECCCCcccC---cCCHHHcCCCCceEEEec------CCcccCcCCH
Confidence 355666666554431 2333 3489999999999998653 377889999999999999 8885557899
Q ss_pred ccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccC
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 555 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L 555 (725)
.++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|+.|++++|.....+|..+..+..+
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 99999999999999999555899999999999999999999667999999999999999999998777899888776655
Q ss_pred cccCeEE------EcC----------------cC---------------------CCccCccccccCCCCCceEEeCcCC
Q 036753 556 RRVREFV------VGG----------------GY---------------------DRACSLGSLKKLNFLQQCGIRGLGG 592 (725)
Q Consensus 556 ~~L~~~~------~~~----------------~~---------------------~~~~~~~~L~~L~~L~~L~i~~~~~ 592 (725)
..+.... ... .. ..+.....+..+++|+.|+++...-
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 5433211 000 00 0011112345677788888876432
Q ss_pred CCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCccccccc
Q 036753 593 VSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFM 672 (725)
Q Consensus 593 ~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~ 672 (725)
....+..+..+++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+... + |..+.
T Consensus 645 ----~g~ip~~l~~l~~L~~L~Ls~N~l~g~-----------------ip~~l~~L~~L~~LdLs~N~l~g~-i-p~~l~ 701 (768)
T 3rgz_A 645 ----SGYIPKEIGSMPYLFILNLGHNDISGS-----------------IPDEVGDLRGLNILDLSSNKLDGR-I-PQAMS 701 (768)
T ss_dssp ----BSCCCGGGGGCTTCCEEECCSSCCCSC-----------------CCGGGGGCTTCCEEECCSSCCEEC-C-CGGGG
T ss_pred ----cccCCHHHhccccCCEEeCcCCccCCC-----------------CChHHhCCCCCCEEECCCCcccCc-C-ChHHh
Confidence 223446688899999999999986443 346778899999999999998863 4 99999
Q ss_pred CccccceeEEcCCCCCCcCCCCCCccccceeecccccCceEeC
Q 036753 673 SLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKRVG 715 (725)
Q Consensus 673 ~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~i~ 715 (725)
.+++|++|+|++|...+.+|..+++.++..+.+.+|+.+...|
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 9999999999999888899998889999989999998776544
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.5e-21 Score=203.91 Aligned_cols=224 Identities=20% Similarity=0.212 Sum_probs=170.9
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
..++++.|.+.++.+.. +|..+.++++|++|+|+ +|. +..+|..++++++|++|+|++|. +..+|..+
T Consensus 79 ~~~~l~~L~L~~n~l~~----lp~~l~~l~~L~~L~L~------~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ----FPDQAFRLSHLQHMTID------AAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSCCSS----CCSCGGGGTTCSEEEEE------SSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG
T ss_pred cccceeEEEccCCCchh----cChhhhhCCCCCEEECC------CCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH
Confidence 34677888888877642 45557778888888888 777 66788888888888888888887 77888888
Q ss_pred hcCCCCcEeecCCCcccccccccccC---------CCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGK---------LRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACS 572 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~ 572 (725)
+++++|++|++++|..+..+|..+.. +++|++|++++| .+..+|..++.+++|++|++.++.... .
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~----l 221 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA----L 221 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC----C
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc----C
Confidence 88888888888887777788877654 888888888887 455788888888888888887766553 2
Q ss_pred ccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCC
Q 036753 573 LGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLK 652 (725)
Q Consensus 573 ~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 652 (725)
...+..+++|+.|++.++.... ..+..+..+++|+.|+|++|.+.+ .++..+..+++|+
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLL-----------------TLPLDIHRLTQLE 280 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCC-----------------BCCTTGGGCTTCC
T ss_pred chhhccCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchh-----------------hcchhhhcCCCCC
Confidence 2346777788888887644322 233457788999999999887322 2344567789999
Q ss_pred cEEEeeecCCCCCcccccccCccccceeEEcCC
Q 036753 653 NLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWW 685 (725)
Q Consensus 653 ~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c 685 (725)
+|+|++|..... + |.++..+++|+.+.+..+
T Consensus 281 ~L~L~~n~~~~~-i-P~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 281 KLDLRGCVNLSR-L-PSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCC-C-CGGGGGSCTTCEEECCGG
T ss_pred EEeCCCCCchhh-c-cHHHhhccCceEEeCCHH
Confidence 999999988774 5 999999999999999866
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=4.5e-21 Score=205.94 Aligned_cols=268 Identities=15% Similarity=0.094 Sum_probs=156.3
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~ 475 (725)
.+++.+.+..+....+|...+ ..+++|++|.+.++.+... .+..|..+++|++|+|+ +|. +..+ |.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~---~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~ 111 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQIEEI---DTYAFAYAHTIQKLYMG------FNA-IRYLPPH 111 (390)
T ss_dssp CCCSEEEEESCEESEECTHHH---HHCCCCSEEECTTSCCCEE---CTTTTTTCTTCCEEECC------SSC-CCCCCTT
T ss_pred CCceEEEecCCchhhCChhHh---cccccCcEEECCCCccccc---ChhhccCCCCcCEEECC------CCC-CCcCCHH
Confidence 567777777776665555443 2678888888888775432 34457788888888888 777 5554 45
Q ss_pred ccccCccccEEEeecCCCccccchhh-hcCCCCcEeecCCCcccccc-cccccCCCcCcEEecCCCcccccCCcccCCCc
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLPETL-CELYNLECLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 553 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~ 553 (725)
.++++++|++|++++|. +..+|..+ +++++|++|++++|. +..+ |..+..+++|++|++++|. +..++ ++.++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~ 186 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIP 186 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCccc--ccccc
Confidence 57888888888888887 77777664 778888888888887 4444 4457788888888888773 33332 33344
Q ss_pred cCcccCeEEEcCcC-------------------CC----------------ccCccccccCCCCCceEEeCcCCCCChhh
Q 036753 554 RLRRVREFVVGGGY-------------------DR----------------ACSLGSLKKLNFLQQCGIRGLGGVSDAGE 598 (725)
Q Consensus 554 ~L~~L~~~~~~~~~-------------------~~----------------~~~~~~L~~L~~L~~L~i~~~~~~~~~~~ 598 (725)
+|+.|++..+.... .. -.....+..+++|+.|++.+... ..
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l----~~ 262 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL----EK 262 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC----CE
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcC----CC
Confidence 44443332221110 00 00112233344444444433211 01
Q ss_pred hhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccc
Q 036753 599 AARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLR 678 (725)
Q Consensus 599 ~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~ 678 (725)
.....+..+++|+.|+|++|.+++ ++.....+++|+.|+|++|.+.. + |.++..+++|+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~~l~~L~ 321 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA------------------LNLYGQPIPTLKVLDLSHNHLLH--V-ERNQPQFDRLE 321 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE------------------EECSSSCCTTCCEEECCSSCCCC--C-GGGHHHHTTCS
T ss_pred cChhHccccccCCEEECCCCcCcc------------------cCcccCCCCCCCEEECCCCccee--c-CccccccCcCC
Confidence 112233444455555555444211 12223456667777777776665 5 55566667777
Q ss_pred eeEEcCCCCCCcCCCCCCccccceeeccccc
Q 036753 679 DLSLFWWSNCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 679 ~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
.|+|++| .+..+| +..+++|+.|++++|+
T Consensus 322 ~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 322 NLYLDHN-SIVTLK-LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred EEECCCC-ccceeC-chhhccCCEEEcCCCC
Confidence 7777776 344444 5666777777777665
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.3e-20 Score=199.07 Aligned_cols=242 Identities=19% Similarity=0.252 Sum_probs=127.0
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+++|++|.+.+|.+.. ++ .+.++++|++|+++ +|. +..+|. +..+++|++|++++|..+..++. +
T Consensus 86 ~l~~L~~L~L~~n~i~~----~~-~~~~l~~L~~L~l~------~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~ 151 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITD----IS-ALQNLTNLRELYLN------EDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-L 151 (347)
T ss_dssp TCTTCCEEECCSSCCCC----CG-GGTTCTTCSEEECT------TSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-G
T ss_pred cCCcCCEEEccCCcccC----ch-HHcCCCcCCEEECc------CCc-ccCchh-hccCCceeEEECCCCCCcccccc-h
Confidence 44444444444444322 12 14444444444444 444 333333 44444455555544432332222 4
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
.++++|++|++++|. +..++. +..+++|++|++++| .+..++. +..+++|+.|.+..+.... +..+..+++
T Consensus 152 ~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~ 222 (347)
T 4fmz_A 152 SNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQITD-----ITPVANMTR 222 (347)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCC-----CGGGGGCTT
T ss_pred hhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCCCCC-----CchhhcCCc
Confidence 444555555555444 333332 444555555555544 2233332 4444444444443332221 112445555
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRG 661 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 661 (725)
|+.|++.++..... ..+..+++|+.|++++|.+++ ...+..+++|+.|++++|.+
T Consensus 223 L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~-------------------~~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 223 LNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD-------------------INAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp CCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC-------------------CGGGTTCTTCCEEECCSSCC
T ss_pred CCEEEccCCccCCC------cchhcCCCCCEEECCCCccCC-------------------ChhHhcCCCcCEEEccCCcc
Confidence 55555554332110 114556666666666665311 13566788899999988887
Q ss_pred CCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeecccccCceEeCc
Q 036753 662 RRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQSVKRVGN 716 (725)
Q Consensus 662 ~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l~~i~~ 716 (725)
.. + + ++..+++|+.|++++|......|. ++.+|+|+.|++++|+ +..+++
T Consensus 278 ~~--~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 278 SD--I-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp CC--C-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred CC--C-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 76 4 3 567888999999998853333333 7788999999999887 666655
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=9.6e-21 Score=220.02 Aligned_cols=288 Identities=13% Similarity=0.113 Sum_probs=194.2
Q ss_pred ceeEEEeeeecCCCCc-------cc-------ccccCCC--CcccccEEEeccCCccccccchhHHhhcCCcceEEEecc
Q 036753 397 KKILHLPLTLRRGASV-------PI-------SIWGNVT--GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQV 460 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~-------~~-------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~ 460 (725)
.+++.|.+..+.+... +. .++..+. ++++|+.|.+++|.+.. .+|..|.++++|++|+|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~---~iP~~l~~L~~L~~L~Ls- 523 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT---QLPDFLYDLPELQSLNIA- 523 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC---SCCGGGGGCSSCCEEECT-
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc---cChHHHhCCCCCCEEECc-
Confidence 5788999998887640 00 1344444 89999999999997543 378889999999999999
Q ss_pred ccCCCccc-ccc-ccccccccCc-------cccEEEeecCCCccccch--hhhcCCCCcEeecCCCcccccccccccCCC
Q 036753 461 RESWPRNS-LIK-EIPTNIEKLL-------HLKYLNLKGQKKIENLPE--TLCELYNLECLNVDDCQNLRELPRGIGKLR 529 (725)
Q Consensus 461 ~~~~~~~~-~~~-~lp~~i~~l~-------~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 529 (725)
+|. +.. .+|..++++. +|++|+|++|. +..+|. .++++++|++|++++|. +..+| .+++++
T Consensus 524 -----~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~ 595 (876)
T 4ecn_A 524 -----CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNV 595 (876)
T ss_dssp -----TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTS
T ss_pred -----CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCC
Confidence 886 344 5888887776 99999999999 779999 99999999999999998 66999 899999
Q ss_pred cCcEEecCCCcccccCCcccCCCcc-CcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccc--c
Q 036753 530 KLMYLHNEDTGCLRYLPAGIGELIR-LRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELE--K 606 (725)
Q Consensus 530 ~L~~L~l~~~~~~~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~--~ 606 (725)
+|++|++++|. +..+|..+..+++ |++|++.++.... .+..+.. ....+|+.|++......... ..+...+. .
T Consensus 596 ~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~-~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~ 671 (876)
T 4ecn_A 596 KLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNA-KSVYVMGSVDFSYNKIGSEG-RNISCSMDDYK 671 (876)
T ss_dssp EESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCT-TCSSCEEEEECCSSCTTTTS-SSCSSCTTTCC
T ss_pred cceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCc-Cchhhhc-cccCCCCEEECcCCcCCCcc-ccchhhhcccc
Confidence 99999999995 5589999999999 9999998776553 2322211 12234777777764332111 11112222 3
Q ss_pred ccccCcEEEEecCCCCCCcccc---------cCCCCCchhHHHHhhhcCC--------CCCCCcEEEeeecCCCCCcccc
Q 036753 607 KKYLLKLGLHFDRIRDGDEEQA---------GRRENEEDEDERLLEALGP--------PPNLKNLGIDEYRGRRNVVPKN 669 (725)
Q Consensus 607 ~~~L~~L~L~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~l~~--------~~~L~~L~L~~~~~~~~~~~p~ 669 (725)
..+|+.|+|++|.++......+ .+... ....++..+.. +++|+.|+|++|.+.. + |.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N---~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~--l-p~ 745 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNN---LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--L-SD 745 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC---CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC--C-CG
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC---cCCccChHHhccccccccccCCccEEECCCCCCcc--c-hH
Confidence 4589999999998753322110 00000 00011221111 1256666666666654 5 55
Q ss_pred ccc--CccccceeEEcCCCCCCcCCC-CCCccccceeeccc
Q 036753 670 WFM--SLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYG 707 (725)
Q Consensus 670 ~l~--~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~ 707 (725)
.+. .+++|+.|+|++|. +..+|. ++.+++|+.|+|++
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCC
T ss_pred HhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCC
Confidence 554 66666666666663 333554 56666666666655
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=6.9e-21 Score=204.47 Aligned_cols=253 Identities=17% Similarity=0.131 Sum_probs=169.8
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-cccccCccccEEEeecCCCccccc-h
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-TNIEKLLHLKYLNLKGQKKIENLP-E 499 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp-~ 499 (725)
.+++++.|.+.++.+... .+..|..+++|++|+|+ ++. +..+| ..++.+++|++|++++|. +..+| .
T Consensus 43 ~l~~l~~l~l~~~~l~~l---~~~~~~~l~~L~~L~L~------~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLN------DLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEE---CTHHHHHCCCCSEEECT------TSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCchhhC---ChhHhcccccCcEEECC------CCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 678999999999876443 34557999999999999 888 66665 479999999999999999 77665 5
Q ss_pred hhhcCCCCcEeecCCCcccccccccc-cCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCcccccc
Q 036753 500 TLCELYNLECLNVDDCQNLRELPRGI-GKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKK 578 (725)
Q Consensus 500 ~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 578 (725)
.++++++|++|++++|. +..+|..+ .++++|++|++++|......|..++.+++|++|++.++..... . +..
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~---~~~ 184 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D---LSL 184 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---C---GGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---c---ccc
Confidence 68999999999999998 88888874 8999999999999955444455689999999999887665431 1 223
Q ss_pred CCCCCceEEe-------------------CcCCCCChhh----------------hhhhccccccccCcEEEEecCCCCC
Q 036753 579 LNFLQQCGIR-------------------GLGGVSDAGE----------------AARAELEKKKYLLKLGLHFDRIRDG 623 (725)
Q Consensus 579 L~~L~~L~i~-------------------~~~~~~~~~~----------------~~~~~l~~~~~L~~L~L~~~~l~~~ 623 (725)
+++|+.+++. ..... .... .....+..+++|+.|+|++|.+.+
T Consensus 185 l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~- 262 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK- 262 (390)
T ss_dssp CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC-EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-
T ss_pred ccccceeecccccccccCCCCcceEEECCCCeee-eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC-
Confidence 3333333322 21100 0000 000223344445555555444211
Q ss_pred CcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccce
Q 036753 624 DEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLES 702 (725)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~ 702 (725)
..+..+..+++|+.|+|++|.+.. + |..+..+++|+.|+|++| .+..+|. ++.+++|+.
T Consensus 263 ----------------~~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 263 ----------------IMYHPFVKMQRLERLYISNNRLVA--L-NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLEN 322 (390)
T ss_dssp ----------------EESGGGTTCSSCCEEECCSSCCCE--E-ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSE
T ss_pred ----------------cChhHccccccCCEEECCCCcCcc--c-CcccCCCCCCCEEECCCC-cceecCccccccCcCCE
Confidence 123445566677777777776665 5 555556677777777777 4445554 566677777
Q ss_pred eecccccCceEeC
Q 036753 703 LLIYGMQSVKRVG 715 (725)
Q Consensus 703 L~L~~~~~l~~i~ 715 (725)
|++++|+ +..++
T Consensus 323 L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 323 LYLDHNS-IVTLK 334 (390)
T ss_dssp EECCSSC-CCCCC
T ss_pred EECCCCc-cceeC
Confidence 7777665 55554
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=6.5e-21 Score=216.16 Aligned_cols=269 Identities=16% Similarity=0.076 Sum_probs=157.7
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-c
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-T 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~ 475 (725)
..++.+.+..+....+|...+ .++++|++|.+++|.+... .|..|..+++|++|+|+ +|. +..+| .
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~---~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQIEEI---DTYAFAYAHTIQKLYMG------FNA-IRYLPPH 117 (597)
T ss_dssp CCCSEEEESSCEESEECTHHH---HHCCCCSEEECTTSCCCEE---CTTTTTTCTTCCEEECC------SSC-CCCCCTT
T ss_pred CCceEEEeeCCCCCCcCHHHH---ccCCCCcEEECCCCCCCCC---ChHHhcCCCCCCEEECC------CCc-CCCCCHH
Confidence 355666666555554554433 2567777777777765432 34457777777777777 666 44443 3
Q ss_pred ccccCccccEEEeecCCCccccchh-hhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCcc
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLPET-LCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIR 554 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~ 554 (725)
.++++++|++|+|++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++++|. +..++ ++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhh
Confidence 46777777777777777 6677665 3777777777777776333334457777777777777773 33332 233334
Q ss_pred CcccCeEEEcCcC-------------------CC----------------ccCccccccCCCCCceEEeCcCCCCChhhh
Q 036753 555 LRRVREFVVGGGY-------------------DR----------------ACSLGSLKKLNFLQQCGIRGLGGVSDAGEA 599 (725)
Q Consensus 555 L~~L~~~~~~~~~-------------------~~----------------~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~ 599 (725)
|+.|++.++.... .. -.....+..+++|+.|++.+... ...
T Consensus 194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l----~~~ 269 (597)
T 3oja_B 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL----EKI 269 (597)
T ss_dssp CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC----CEE
T ss_pred hhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc----CCC
Confidence 4333322211110 00 00112334444455555444221 111
Q ss_pred hhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccce
Q 036753 600 ARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRD 679 (725)
Q Consensus 600 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~ 679 (725)
.+..+..+++|+.|+|++|.+++ ++..+.++++|+.|+|++|.+.. + |.++..+++|+.
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~------------------l~~~~~~l~~L~~L~Ls~N~l~~--i-~~~~~~l~~L~~ 328 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA------------------LNLYGQPIPTLKVLDLSHNHLLH--V-ERNQPQFDRLEN 328 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE------------------EECSSSCCTTCCEEECCSSCCCC--C-GGGHHHHTTCSE
T ss_pred CHHHhcCccCCCEEECCCCCCCC------------------CCcccccCCCCcEEECCCCCCCc--c-CcccccCCCCCE
Confidence 22334455555555555554311 22334557788888888888776 7 777777888888
Q ss_pred eEEcCCCCCCcCCCCCCccccceeeccccc
Q 036753 680 LSLFWWSNCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 680 L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
|+|++|. +..+| ++.+++|+.|+|++|+
T Consensus 329 L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 329 LYLDHNS-IVTLK-LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EECCSSC-CCCCC-CCTTCCCSEEECCSSC
T ss_pred EECCCCC-CCCcC-hhhcCCCCEEEeeCCC
Confidence 8888884 45554 6778888888888776
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=3.2e-20 Score=195.98 Aligned_cols=257 Identities=19% Similarity=0.227 Sum_probs=166.9
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.+++.|.+..+....++ .+..+++|++|.+.+|.+.. ++. +..+++|++|+++ +|.....++ .
T Consensus 88 ~~L~~L~L~~n~i~~~~-----~~~~l~~L~~L~l~~n~i~~----~~~-~~~l~~L~~L~l~------~n~~~~~~~-~ 150 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDIS-----ALQNLTNLRELYLNEDNISD----ISP-LANLTKMYSLNLG------ANHNLSDLS-P 150 (347)
T ss_dssp TTCCEEECCSSCCCCCG-----GGTTCTTCSEEECTTSCCCC----CGG-GTTCTTCCEEECT------TCTTCCCCG-G
T ss_pred CcCCEEEccCCcccCch-----HHcCCCcCCEEECcCCcccC----chh-hccCCceeEEECC------CCCCccccc-c
Confidence 46666776666555332 23377778888877776543 233 6777778888877 665344443 3
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
+..+++|++|++++|. +..++. +.++++|++|++++|. +..+|. +..+++|+.|++++|. +..++. +..+++|+
T Consensus 151 ~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~ 224 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLN 224 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCC
T ss_pred hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCC
Confidence 7777778888887777 666665 7777788888887776 566654 6777777888777773 344433 66777777
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCch
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEED 636 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 636 (725)
+|++.++.... +..+..+++|+.|++...... . ...+..+++|+.|++++|.+++.
T Consensus 225 ~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~-~-----~~~~~~l~~L~~L~l~~n~l~~~------------- 280 (347)
T 4fmz_A 225 SLKIGNNKITD-----LSPLANLSQLTWLEIGTNQIS-D-----INAVKDLTKLKMLNVGSNQISDI------------- 280 (347)
T ss_dssp EEECCSSCCCC-----CGGGTTCTTCCEEECCSSCCC-C-----CGGGTTCTTCCEEECCSSCCCCC-------------
T ss_pred EEEccCCccCC-----CcchhcCCCCCEEECCCCccC-C-----ChhHhcCCCcCEEEccCCccCCC-------------
Confidence 77776655443 222666777777777664321 1 13356677777777777763211
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeeccccc
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
..+..+++|+.|++++|.+.. .+|.++..+++|+.|+|++|. +..++++..+++|+.|++++|+
T Consensus 281 ------~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 281 ------SVLNNLSQLNSLFLNNNQLGN--EDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp ------GGGGGCTTCSEEECCSSCCCG--GGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred ------hhhcCCCCCCEEECcCCcCCC--cChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 234556777888887777665 436667777778888887774 5555557777778888777775
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=8.4e-20 Score=191.41 Aligned_cols=268 Identities=20% Similarity=0.183 Sum_probs=169.6
Q ss_pred eEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cccc
Q 036753 399 ILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNI 477 (725)
Q Consensus 399 ~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i 477 (725)
++.+.+.......+|..+ .++|+.|.+.+|.+... .+..|.++++|++|+|+ +|. +..+ |..+
T Consensus 35 l~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~~~ 98 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI------SPDTTLLDLQNNDISEL---RKDDFKGLQHLYALVLV------NNK-ISKIHEKAF 98 (332)
T ss_dssp TTEEECCSSCCSSCCSCC------CTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECC------SSC-CCEECGGGS
T ss_pred CCEEECCCCCccccCCCC------CCCCeEEECCCCcCCcc---CHhHhhCCCCCcEEECC------CCc-cCccCHhHh
Confidence 444555554444444333 25778888888775432 34457778888888887 777 5444 6677
Q ss_pred ccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCccc--ccCCcccCCCcc
Q 036753 478 EKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCL--RYLPAGIGELIR 554 (725)
Q Consensus 478 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~--~~lp~~i~~l~~ 554 (725)
+++++|++|++++|. +..+|..+. ++|++|++++|. +..+|.. +.++++|++|++++|... ...|..+..+ +
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred hCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 888888888888887 777777665 788888888877 5566554 677888888888877432 2345556666 7
Q ss_pred CcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCC
Q 036753 555 LRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENE 634 (725)
Q Consensus 555 L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 634 (725)
|++|++..+..... +..+ .++|+.|++...... ......+..+++|+.|+|++|.+.+..
T Consensus 174 L~~L~l~~n~l~~l-~~~~-----~~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~L~~N~l~~~~---------- 233 (332)
T 2ft3_A 174 LNYLRISEAKLTGI-PKDL-----PETLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIE---------- 233 (332)
T ss_dssp CSCCBCCSSBCSSC-CSSS-----CSSCSCCBCCSSCCC----CCCTTSSTTCTTCSCCBCCSSCCCCCC----------
T ss_pred cCEEECcCCCCCcc-Cccc-----cCCCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCCcCC----------
Confidence 77777766654431 1111 145666666543211 111234666778888888877753322
Q ss_pred chhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCC------ccccceeecc
Q 036753 635 EDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGK------LKSLESLLIY 706 (725)
Q Consensus 635 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~------lp~L~~L~L~ 706 (725)
...+..+++|+.|++++|.+.. + |.++..+++|+.|+|++| .++.+|. +.. +++|+.|++.
T Consensus 234 -------~~~~~~l~~L~~L~L~~N~l~~--l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 234 -------NGSLSFLPTLRELHLDNNKLSR--V-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp -------TTGGGGCTTCCEEECCSSCCCB--C-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred -------hhHhhCCCCCCEEECCCCcCee--c-ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee
Confidence 1244566788888888887776 7 777777888888888877 4555543 222 4677888888
Q ss_pred cccCce--EeCcccc
Q 036753 707 GMQSVK--RVGNELS 719 (725)
Q Consensus 707 ~~~~l~--~i~~~~~ 719 (725)
+++ +. .+++..|
T Consensus 303 ~N~-~~~~~~~~~~~ 316 (332)
T 2ft3_A 303 NNP-VPYWEVQPATF 316 (332)
T ss_dssp SSS-SCGGGSCGGGG
T ss_pred cCc-ccccccCcccc
Confidence 777 33 3444443
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=7.8e-21 Score=208.59 Aligned_cols=273 Identities=15% Similarity=0.133 Sum_probs=174.0
Q ss_pred ceeEEEeeeecCCC-CcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc
Q 036753 397 KKILHLPLTLRRGA-SVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~ 475 (725)
.+++.|.+..+... .++. ..+.++++|++|++++|.+... .|..|.++++|++|+|+ +|.+....|.
T Consensus 54 ~~L~~L~L~~n~~~~~i~~---~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~------~n~l~~~~~~ 121 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYNQFLQL---ETGAFNGLANLEVLTLT------QCNLDGAVLS 121 (455)
T ss_dssp TTCCEEECCCCSTTCEECT---TTTTTCTTCCEEECTTCTTCEE---CTTTTTTCTTCCEEECT------TSCCBTHHHH
T ss_pred ccccEEECcCCcccceECc---ccccccccCCEEeCCCCccCcc---ChhhccCcccCCEEeCC------CCCCCccccC
Confidence 57888888877654 1222 2234889999999999986533 46678999999999999 8883333454
Q ss_pred c--cccCccccEEEeecCCCcccc-chh-hhcCCCCcEeecCCCcccccccccccCC-----------------------
Q 036753 476 N--IEKLLHLKYLNLKGQKKIENL-PET-LCELYNLECLNVDDCQNLRELPRGIGKL----------------------- 528 (725)
Q Consensus 476 ~--i~~l~~Lr~L~L~~~~~i~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L----------------------- 528 (725)
. ++++++|++|++++|. +..+ |.. +.++++|++|++++|......|..+..+
T Consensus 122 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp SSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT
T ss_pred cccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc
Confidence 4 8889999999999998 6655 655 8899999999999998444445555544
Q ss_pred -----------CcCcEEecCCCcccccCCcccCC---------------------------------------CccCccc
Q 036753 529 -----------RKLMYLHNEDTGCLRYLPAGIGE---------------------------------------LIRLRRV 558 (725)
Q Consensus 529 -----------~~L~~L~l~~~~~~~~lp~~i~~---------------------------------------l~~L~~L 558 (725)
++|++|++++|......|..+.. .++|++|
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEE
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEE
Confidence 45666666655332222221111 1233333
Q ss_pred CeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhH
Q 036753 559 REFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDED 638 (725)
Q Consensus 559 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 638 (725)
++.++.... .....+..+++|+.|++..... .......+.++++|+.|+|++|.++..
T Consensus 281 ~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------- 338 (455)
T 3v47_A 281 DLSKSKIFA---LLKSVFSHFTDLEQLTLAQNEI----NKIDDNAFWGLTHLLKLNLSQNFLGSI--------------- 338 (455)
T ss_dssp ECCSSCCCE---ECTTTTTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCEE---------------
T ss_pred EecCccccc---cchhhcccCCCCCEEECCCCcc----cccChhHhcCcccCCEEECCCCccCCc---------------
Confidence 333322221 1112244555566665554321 111223455666777777776663211
Q ss_pred HHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeeccccc
Q 036753 639 ERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 639 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~ 709 (725)
.+..+..+++|++|+|++|.+.. +.|.++..+++|++|+|++| .++.+|. +..+++|+.|+|++|+
T Consensus 339 --~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 339 --DSRMFENLDKLEVLDLSYNHIRA--LGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp --CGGGGTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --ChhHhcCcccCCEEECCCCcccc--cChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 13456677888888888887766 54777778888888888887 4555665 6778888888888777
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.6e-20 Score=213.03 Aligned_cols=254 Identities=16% Similarity=0.118 Sum_probs=168.4
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-cccccCccccEEEeecCCCccccch-
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-TNIEKLLHLKYLNLKGQKKIENLPE- 499 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp~- 499 (725)
.+++++.+.+.++.+..+ .+..|.++++|++|+|+ +|. +..+| ..++.+++|++|+|++|. +..+|+
T Consensus 49 ~l~~l~~l~l~~~~l~~l---p~~~~~~l~~L~~L~L~------~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLN------DLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCEESEE---CTHHHHHCCCCSEEECT------TSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCCCCCCc---CHHHHccCCCCcEEECC------CCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 578999999999876543 45668999999999999 888 66654 589999999999999999 777665
Q ss_pred hhhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCcccccc
Q 036753 500 TLCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKK 578 (725)
Q Consensus 500 ~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 578 (725)
.++++++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++.++..... . +..
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~---~~~ 190 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D---LSL 190 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C---GGG
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C---hhh
Confidence 57999999999999998 7788887 48999999999999965554556799999999999877665431 1 223
Q ss_pred CCCCCceEEeCcCCC------------------CChhh----------------hhhhccccccccCcEEEEecCCCCCC
Q 036753 579 LNFLQQCGIRGLGGV------------------SDAGE----------------AARAELEKKKYLLKLGLHFDRIRDGD 624 (725)
Q Consensus 579 L~~L~~L~i~~~~~~------------------~~~~~----------------~~~~~l~~~~~L~~L~L~~~~l~~~~ 624 (725)
+++|+.|++...... ..... .....+..+++|+.|+|++|.+++
T Consensus 191 l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~-- 268 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-- 268 (597)
T ss_dssp CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE--
T ss_pred hhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC--
Confidence 333333333221100 00000 001223344445555555444211
Q ss_pred cccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCcccccee
Q 036753 625 EEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESL 703 (725)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L 703 (725)
..+..+..+++|+.|+|++|.+.. + |.++..+++|+.|+|++| .+..+|. ++.+++|+.|
T Consensus 269 ---------------~~~~~~~~l~~L~~L~Ls~N~l~~--l-~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 269 ---------------IMYHPFVKMQRLERLYISNNRLVA--L-NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENL 329 (597)
T ss_dssp ---------------EESGGGTTCSSCCEEECTTSCCCE--E-ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEE
T ss_pred ---------------CCHHHhcCccCCCEEECCCCCCCC--C-CcccccCCCCcEEECCCC-CCCccCcccccCCCCCEE
Confidence 123345556666666666666655 5 555556666666666666 3445554 5566667777
Q ss_pred ecccccCceEeC
Q 036753 704 LIYGMQSVKRVG 715 (725)
Q Consensus 704 ~L~~~~~l~~i~ 715 (725)
+|++|+ +..+|
T Consensus 330 ~L~~N~-l~~~~ 340 (597)
T 3oja_B 330 YLDHNS-IVTLK 340 (597)
T ss_dssp ECCSSC-CCCCC
T ss_pred ECCCCC-CCCcC
Confidence 776665 44444
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=4.6e-20 Score=193.23 Aligned_cols=271 Identities=18% Similarity=0.184 Sum_probs=194.9
Q ss_pred eeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccc
Q 036753 398 KILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTN 476 (725)
Q Consensus 398 ~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~ 476 (725)
.++.+.+.......+|..+ .++++.|.+++|.+... .+..|.++++|++|+|+ +|. +..+ |..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~------~~~l~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL------PPDTALLDLQNNKITEI---KDGDFKNLKNLHTLILI------NNK-ISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC------CTTCCEEECCSSCCCCB---CTTTTTTCTTCCEEECC------SSC-CCCBCTTT
T ss_pred CCeEEEecCCCccccCccC------CCCCeEEECCCCcCCEe---ChhhhccCCCCCEEECC------CCc-CCeeCHHH
Confidence 4455555555555444433 36789999999886543 34468899999999998 888 5555 788
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCccc--ccCCcccCCCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCL--RYLPAGIGELI 553 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~--~~lp~~i~~l~ 553 (725)
++.+++|++|++++|. ++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...+..+..++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 9999999999999998 888888765 799999999998 555554 5788999999999988542 24566788888
Q ss_pred cCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCC
Q 036753 554 RLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRREN 633 (725)
Q Consensus 554 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 633 (725)
+|++|++..+..... +..+ .++|+.|++..... .......+..+++|+.|+|++|.+++..
T Consensus 172 ~L~~L~l~~n~l~~l-~~~~-----~~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------- 232 (330)
T 1xku_A 172 KLSYIRIADTNITTI-PQGL-----PPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVD--------- 232 (330)
T ss_dssp TCCEEECCSSCCCSC-CSSC-----CTTCSEEECTTSCC----CEECTGGGTTCTTCCEEECCSSCCCEEC---------
T ss_pred CcCEEECCCCccccC-Cccc-----cccCCEEECCCCcC----CccCHHHhcCCCCCCEEECCCCcCceeC---------
Confidence 999888876655431 1111 15677777765432 1222345778889999999998753221
Q ss_pred CchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CC------Cccccceeec
Q 036753 634 EEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LG------KLKSLESLLI 705 (725)
Q Consensus 634 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~------~lp~L~~L~L 705 (725)
...+..+++|+.|+|++|.+.. + |.++..+++|++|+|++| .++.+|. +. .+++|+.|++
T Consensus 233 --------~~~~~~l~~L~~L~L~~N~l~~--l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 233 --------NGSLANTPHLRELHLNNNKLVK--V-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp --------TTTGGGSTTCCEEECCSSCCSS--C-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred --------hhhccCCCCCCEEECCCCcCcc--C-ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 1345667899999999998887 8 888889999999999998 4666654 32 3578899999
Q ss_pred ccccCce--EeCccccC
Q 036753 706 YGMQSVK--RVGNELSE 720 (725)
Q Consensus 706 ~~~~~l~--~i~~~~~~ 720 (725)
.+++ +. .+++..|.
T Consensus 301 ~~N~-~~~~~i~~~~f~ 316 (330)
T 1xku_A 301 FSNP-VQYWEIQPSTFR 316 (330)
T ss_dssp CSSS-SCGGGSCGGGGT
T ss_pred ecCc-ccccccCccccc
Confidence 9988 43 25544443
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.1e-20 Score=196.23 Aligned_cols=251 Identities=16% Similarity=0.090 Sum_probs=200.2
Q ss_pred ceeEEEeeeecCCCC---cccccccCCCCcccccEEEecc-CCccccccchhHHhhcCCcceEEEeccccCCCccccccc
Q 036753 397 KKILHLPLTLRRGAS---VPISIWGNVTGLRGLRSLLVKS-DEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKE 472 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~ 472 (725)
.++++|.+..+.... ++..+ .++++|++|.+.+ +.+.. .+|..|.++++|++|+|+ +|.+...
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l----~~l~~L~~L~L~~~n~l~~---~~p~~l~~l~~L~~L~Ls------~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL----ANLPYLNFLYIGGINNLVG---PIPPAIAKLTQLHYLYIT------HTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG----GGCTTCSEEEEEEETTEES---CCCGGGGGCTTCSEEEEE------EECCEEE
T ss_pred ceEEEEECCCCCccCCcccChhH----hCCCCCCeeeCCCCCcccc---cCChhHhcCCCCCEEECc------CCeeCCc
Confidence 578999998887763 34444 4899999999995 76542 367789999999999999 8884447
Q ss_pred cccccccCccccEEEeecCCCcc-ccchhhhcCCCCcEeecCCCcccccccccccCCC-cCcEEecCCCcccccCCcccC
Q 036753 473 IPTNIEKLLHLKYLNLKGQKKIE-NLPETLCELYNLECLNVDDCQNLRELPRGIGKLR-KLMYLHNEDTGCLRYLPAGIG 550 (725)
Q Consensus 473 lp~~i~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~~~~lp~~i~ 550 (725)
+|..++++++|++|++++|. +. .+|..+.++++|++|++++|.....+|..+..++ +|++|++++|.....+|..++
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 89999999999999999999 55 8999999999999999999995558999999998 999999999976668888898
Q ss_pred CCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccC
Q 036753 551 ELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGR 630 (725)
Q Consensus 551 ~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~ 630 (725)
.++ |++|++.++.... .....+..+++|+.|++....... ....+..+++|+.|+|+.|.+++
T Consensus 196 ~l~-L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~-------- 258 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEG---DASVLFGSDKNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYG-------- 258 (313)
T ss_dssp GCC-CSEEECCSSEEEE---CCGGGCCTTSCCSEEECCSSEECC-----BGGGCCCCTTCCEEECCSSCCEE--------
T ss_pred CCc-ccEEECcCCcccC---cCCHHHhcCCCCCEEECCCCceee-----ecCcccccCCCCEEECcCCcccC--------
Confidence 887 9999887765543 223456678888888887643211 12336778999999999998532
Q ss_pred CCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCc
Q 036753 631 RENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEH 690 (725)
Q Consensus 631 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~ 690 (725)
.++..+..+++|+.|+|++|.+... + |.. ..+++|+.|++.+|+.+..
T Consensus 259 ---------~~p~~l~~l~~L~~L~Ls~N~l~~~-i-p~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 259 ---------TLPQGLTQLKFLHSLNVSFNNLCGE-I-PQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ---------CCCGGGGGCTTCCEEECCSSEEEEE-C-CCS-TTGGGSCGGGTCSSSEEES
T ss_pred ---------cCChHHhcCcCCCEEECcCCccccc-C-CCC-ccccccChHHhcCCCCccC
Confidence 2345677889999999999998752 4 665 7899999999999974443
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=4.7e-20 Score=193.16 Aligned_cols=266 Identities=17% Similarity=0.177 Sum_probs=179.4
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+..++... +.++++|++|.+.+|.+... .|..|.++++|++|+++ +|. +..+|..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls------~n~-l~~l~~~ 118 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGD---FKNLKNLHTLILINNKISKI---SPGAFAPLVKLERLYLS------KNQ-LKELPEK 118 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTT---TTTCTTCCEEECCSSCCCCB---CTTTTTTCTTCCEEECC------SSC-CSBCCSS
T ss_pred CCCeEEECCCCcCCEeChhh---hccCCCCCEEECCCCcCCee---CHHHhcCCCCCCEEECC------CCc-CCccChh
Confidence 56777888777766544322 34788888888888876432 46668888888888888 777 7777776
Q ss_pred cccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCccc--ccccccccCCCcCcEEecCCCcccccCCcccCCCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNL--RELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 553 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~ 553 (725)
+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...|..+..+++|++|++++| .+..+|..+. +
T Consensus 119 ~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~ 192 (330)
T 1xku_A 119 MP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--P 192 (330)
T ss_dssp CC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--T
T ss_pred hc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--c
Confidence 54 678888888887 666554 5788888888888888732 145666788888888888887 4566776654 6
Q ss_pred cCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCC
Q 036753 554 RLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRREN 633 (725)
Q Consensus 554 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 633 (725)
+|++|++.++.... .....+..+++|+.|++....-. ......+..+++|+.|+|++|.+.
T Consensus 193 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~------------ 253 (330)
T 1xku_A 193 SLTELHLDGNKITK---VDAASLKGLNNLAKLGLSFNSIS----AVDNGSLANTPHLRELHLNNNKLV------------ 253 (330)
T ss_dssp TCSEEECTTSCCCE---ECTGGGTTCTTCCEEECCSSCCC----EECTTTGGGSTTCCEEECCSSCCS------------
T ss_pred cCCEEECCCCcCCc---cCHHHhcCCCCCCEEECCCCcCc----eeChhhccCCCCCCEEECCCCcCc------------
Confidence 77777776554432 12345667777888777664321 111234667788888888888742
Q ss_pred CchhHHHHhhhcCCCCCCCcEEEeeecCCCCCccccccc------CccccceeEEcCCCCCC-cCCC--CCCccccceee
Q 036753 634 EEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFM------SLTNLRDLSLFWWSNCE-HLPP--LGKLKSLESLL 704 (725)
Q Consensus 634 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~------~l~~L~~L~L~~c~~~~-~lp~--l~~lp~L~~L~ 704 (725)
.++..+..+++|++|++++|.+.. +++..+. .++.|+.|++.+|+... .+++ +..+++|+.++
T Consensus 254 ------~lp~~l~~l~~L~~L~l~~N~i~~--~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 254 ------KVPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp ------SCCTTTTTCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred ------cCChhhccCCCcCEEECCCCcCCc--cChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence 233456677888888888888776 5444443 24678888888886321 2332 66778888888
Q ss_pred cccc
Q 036753 705 IYGM 708 (725)
Q Consensus 705 L~~~ 708 (725)
|++|
T Consensus 326 L~~N 329 (330)
T 1xku_A 326 LGNY 329 (330)
T ss_dssp C---
T ss_pred eccc
Confidence 8766
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=3.1e-20 Score=211.63 Aligned_cols=285 Identities=15% Similarity=0.101 Sum_probs=130.3
Q ss_pred eeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccc
Q 036753 398 KILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTN 476 (725)
Q Consensus 398 ~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~ 476 (725)
.++.+.+..+....++... +..+++|+.|.+.+|.+.. +|..+..+++|++|+++ +|. +..+ |..
T Consensus 255 ~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~----lp~~l~~l~~L~~L~l~------~n~-l~~~~~~~ 320 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNT---FHCFSGLQELDLTATHLSE----LPSGLVGLSTLKKLVLS------ANK-FENLCQIS 320 (606)
T ss_dssp EEEEEECTTCCCSSCCTTT---TTTCTTCSEEECTTSCCSC----CCSSCCSCTTCCEEECT------TCC-CSBGGGGC
T ss_pred ceeEEEeecCccCccCHHH---hccccCCCEEeccCCccCC----CChhhcccccCCEEECc------cCC-cCcCchhh
Confidence 4555555555544333321 2255666666666655431 34445555666666665 555 3332 445
Q ss_pred cccCccccEEEeecCCCccccchh-hhcCCCCcEeecCCCcccccc---cccccCCCcCcEEecCCCcccccCCcccCCC
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPET-LCELYNLECLNVDDCQNLREL---PRGIGKLRKLMYLHNEDTGCLRYLPAGIGEL 552 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l 552 (725)
++.+++|++|++++|.....+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++|......|..++.+
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 555566666666655522244432 5555566666665555 3222 4445555555555555554333334445555
Q ss_pred ccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcc---cc-
Q 036753 553 IRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEE---QA- 628 (725)
Q Consensus 553 ~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~---~~- 628 (725)
++|++|++.++.... ......+..+++|+.|++.+.... ......+..+++|+.|+|++|.+.+.... .+
T Consensus 400 ~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 400 PQLELLDLAFTRLKV--KDAQSPFQNLHLLKVLNLSHSLLD----ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473 (606)
T ss_dssp TTCSEEECTTCCEEC--CTTCCTTTTCTTCCEEECTTCCCB----TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred ccCCeEECCCCcCCC--cccchhhhCcccCCEEECCCCccC----CcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence 555555554433222 001112334444555544432210 11112233444555555554443210000 00
Q ss_pred --------cCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCcc
Q 036753 629 --------GRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLK 698 (725)
Q Consensus 629 --------~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp 698 (725)
..... ......+..+..+++|+.|+|++|.+.. ..|.++..+++| .|+|++|. +..+|+ ++.++
T Consensus 474 ~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 474 TLGRLEILVLSFC--DLSSIDQHAFTSLKMMNHVDLSHNRLTS--SSIEALSHLKGI-YLNLASNH-ISIILPSLLPILS 547 (606)
T ss_dssp GCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCG--GGGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHH
T ss_pred cCCCccEEECCCC--ccCccChhhhccccCCCEEECCCCccCc--CChhHhCccccc-EEECcCCc-ccccCHhhcccCC
Confidence 00000 0000112334455556666666655544 335555555555 56666553 223332 45556
Q ss_pred ccceeeccccc
Q 036753 699 SLESLLIYGMQ 709 (725)
Q Consensus 699 ~L~~L~L~~~~ 709 (725)
+|+.|++++|+
T Consensus 548 ~L~~L~l~~N~ 558 (606)
T 3t6q_A 548 QQRTINLRQNP 558 (606)
T ss_dssp TSSEEECTTCC
T ss_pred CCCEEeCCCCC
Confidence 66666666555
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=3.5e-20 Score=214.18 Aligned_cols=156 Identities=21% Similarity=0.154 Sum_probs=124.8
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT- 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~- 475 (725)
.++++|.+..+.+..++... +.++++|++|++++|.+... .|..|.++++|++|+|+ +|. +..+|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~------~n~-l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAAN---FTRYSQLTSLDVGFNTISKL---EPELCQKLPMLKVLNLQ------HNE-LSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGG---GGGGTTCSEEECCSSCCCCC---CTTHHHHCTTCCEEECC------SSC-CCCCCTT
T ss_pred CCCcEEECCCCCCCCcCHHH---HhCCCcCcEEECCCCccCcc---CHHHHhcccCcCEEECC------CCc-cCccChh
Confidence 68999999988877655443 23899999999999986543 57779999999999999 888 778876
Q ss_pred ccccCccccEEEeecCCCccccc-hhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCc-cc--CC
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLP-ETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA-GI--GE 551 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i--~~ 551 (725)
.++++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|.. ..++. .+ ..
T Consensus 92 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~ 169 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFA 169 (680)
T ss_dssp TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGT
T ss_pred hhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccc
Confidence 59999999999999998 77776 6799999999999999985555666789999999999999844 44443 33 35
Q ss_pred CccCcccCeEEEcCcC
Q 036753 552 LIRLRRVREFVVGGGY 567 (725)
Q Consensus 552 l~~L~~L~~~~~~~~~ 567 (725)
+++|++|++..+....
T Consensus 170 ~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKE 185 (680)
T ss_dssp TCEESEEECTTCCCCC
T ss_pred cccccEEECCCCcccc
Confidence 5788888887665443
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=191.31 Aligned_cols=251 Identities=16% Similarity=0.122 Sum_probs=182.4
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchh-h
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPET-L 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i 501 (725)
++|+.|.+++|.+... .+..|.++++|++|+++ +|. +..+ |..++++++|++|++++|. ++.+|.. +
T Consensus 52 ~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLT------SNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF 120 (353)
T ss_dssp TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECT------TSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH
T ss_pred ccCcEEECCCCcCccc---CHHHhccCCCCCEEECC------CCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh
Confidence 5899999999986543 34468899999999999 887 6555 5678999999999999998 8888876 8
Q ss_pred hcCCCCcEeecCCCcccccccc--cccCCCcCcEEecCCCcccccC-CcccCCCccCcccCeEEEcCcCCCccCcccccc
Q 036753 502 CELYNLECLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYL-PAGIGELIRLRRVREFVVGGGYDRACSLGSLKK 578 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 578 (725)
+++++|++|++++|. +..+|. .+.++++|++|++++|..+..+ |..++.+++|++|++.++..... ....+..
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 196 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY---EPKSLKS 196 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE---CTTTTTT
T ss_pred CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc---CHHHHhc
Confidence 899999999999997 778887 6888999999999998655555 45688999999999888765532 2334566
Q ss_pred CCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEee
Q 036753 579 LNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDE 658 (725)
Q Consensus 579 L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 658 (725)
+++|+.|++..... ..... ..+..+++|+.|++++|.+++.... ........+.++.+++++
T Consensus 197 l~~L~~L~l~~n~l-~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~--------------~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 197 IQNVSHLILHMKQH-ILLLE---IFVDVTSSVECLELRDTDLDTFHFS--------------ELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp CSEEEEEEEECSCS-TTHHH---HHHHHTTTEEEEEEESCBCTTCCCC--------------------CCCCCCEEEEES
T ss_pred cccCCeecCCCCcc-ccchh---hhhhhcccccEEECCCCcccccccc--------------ccccccccchhhcccccc
Confidence 77788888876542 22211 2234578899999999986543321 011223456677777776
Q ss_pred ecCCCC---CcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeeccccc
Q 036753 659 YRGRRN---VVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 659 ~~~~~~---~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~ 709 (725)
+.+... .+ |.++..+++|+.|+|++| .++.+|. ++.+++|++|+|++|+
T Consensus 259 ~~l~~~~l~~l-~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 259 VKITDESLFQV-MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CBCCHHHHHHH-HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCcchhhh-HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 654321 14 666778888888888888 4557776 5788888888888876
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=3.5e-20 Score=211.17 Aligned_cols=254 Identities=18% Similarity=0.133 Sum_probs=141.5
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.+++.|.+..+....+|..+. ++++|+.|.+.+|.+... .|..+..+++|++|+++ +|.....+|..
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~----~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~------~n~~~~~~~~~ 344 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLV----GLSTLKKLVLSANKFENL---CQISASNFPSLTHLSIK------GNTKRLELGTG 344 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCC----SCTTCCEEECTTCCCSBG---GGGCGGGCTTCSEEECC------SCSSCCBCCSS
T ss_pred cCCCEEeccCCccCCCChhhc----ccccCCEEECccCCcCcC---chhhhhccCcCCEEECC------CCCcccccchh
Confidence 466677776666654444433 667777777777765322 34445666666666666 55533244332
Q ss_pred -cccCccccEEEeecCCCcccc---chhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcc-cCC
Q 036753 477 -IEKLLHLKYLNLKGQKKIENL---PETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAG-IGE 551 (725)
Q Consensus 477 -i~~l~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~ 551 (725)
++.+++|++|++++|. +..+ |..++++++|++|++++|......|..+..+++|++|++++|......|.. +..
T Consensus 345 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 345 CLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 5556666666666655 4333 444555566666666655533333444555555555555555332222222 445
Q ss_pred CccCcccCeEEEcCcCCCcc------------------------CccccccCCCCCceEEeCcCCCCChhhhhhhccccc
Q 036753 552 LIRLRRVREFVVGGGYDRAC------------------------SLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKK 607 (725)
Q Consensus 552 l~~L~~L~~~~~~~~~~~~~------------------------~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 607 (725)
+++|++|++.++......+. ....+..+++|+.|++.++... ......+..+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l 499 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS----SIDQHAFTSL 499 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC----EECTTTTTTC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC----ccChhhhccc
Confidence 55555555444333221111 1122344444444444432211 1112334455
Q ss_pred cccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCC
Q 036753 608 KYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSN 687 (725)
Q Consensus 608 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~ 687 (725)
++|+.|+|++|.+ ....+..+..+++| .|++++|.+.. ++|..+..+++|+.|+|++|+.
T Consensus 500 ~~L~~L~Ls~N~l-----------------~~~~~~~l~~l~~L-~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 500 KMMNHVDLSHNRL-----------------TSSSIEALSHLKGI-YLNLASNHISI--ILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTCCEEECCSSCC-----------------CGGGGGGGTTCCSC-EEECCSSCCCC--CCGGGHHHHHTSSEEECTTCCE
T ss_pred cCCCEEECCCCcc-----------------CcCChhHhCccccc-EEECcCCcccc--cCHhhcccCCCCCEEeCCCCCc
Confidence 5566666655552 22345678889999 99999999987 6588888999999999999974
Q ss_pred C
Q 036753 688 C 688 (725)
Q Consensus 688 ~ 688 (725)
.
T Consensus 560 ~ 560 (606)
T 3t6q_A 560 D 560 (606)
T ss_dssp E
T ss_pred c
Confidence 3
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=2.1e-19 Score=196.14 Aligned_cols=256 Identities=15% Similarity=0.141 Sum_probs=174.7
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+...+ . +..+++|+.|.+++|.+.. +| +..+++|++|+++ +|. +..+|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~----l~~l~~L~~L~Ls~n~l~~----~~--~~~l~~L~~L~Ls------~N~-l~~~~-- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-G----IEKLTGLTKLICTSNNITT----LD--LSQNTNLTYLACD------SNK-LTNLD-- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT-T----GGGCTTCSEEECCSSCCSC----CC--CTTCTTCSEEECC------SSC-CSCCC--
T ss_pred CCCCEEEccCCCcccCh-h----hcccCCCCEEEccCCcCCe----Ec--cccCCCCCEEECc------CCC-Cceee--
Confidence 56778888777766543 2 3378888888888887654 23 7788888888888 777 66664
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
++++++|++|++++|. ++.+| ++++++|++|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 7888888888888887 77776 7888888888888887 66664 778888888888888665555 467788888
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCch
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEED 636 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 636 (725)
+|++..+.... +. +..+++|+.|.+....-.. ..+..+++|+.|++++|.+++
T Consensus 174 ~L~ls~n~l~~-----l~-l~~l~~L~~L~l~~N~l~~-------~~l~~l~~L~~L~Ls~N~l~~-------------- 226 (457)
T 3bz5_A 174 TLDCSFNKITE-----LD-VSQNKLLNRLNCDTNNITK-------LDLNQNIQLTFLDCSSNKLTE-------------- 226 (457)
T ss_dssp EEECCSSCCCC-----CC-CTTCTTCCEEECCSSCCSC-------CCCTTCTTCSEEECCSSCCSC--------------
T ss_pred EEECCCCccce-----ec-cccCCCCCEEECcCCcCCe-------eccccCCCCCEEECcCCcccc--------------
Confidence 88877665443 11 5666777777776543211 136667888888888877422
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCcc-------ccceeEEcCCCCCCcCCCCCCccccceeeccccc
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLT-------NLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~-------~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
++ +..+++|+.|++++|.+.. +++..+..+. +|+.|++++|...+.+| .+.+++|+.|++++|+
T Consensus 227 ----ip--~~~l~~L~~L~l~~N~l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 227 ----ID--VTPLTQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNT 297 (457)
T ss_dssp ----CC--CTTCTTCSEEECCSSCCSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCT
T ss_pred ----cC--ccccCCCCEEEeeCCcCCC--cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCc
Confidence 11 4566778888888777766 5333333332 44555555555444444 4556677777777776
Q ss_pred CceEeCc
Q 036753 710 SVKRVGN 716 (725)
Q Consensus 710 ~l~~i~~ 716 (725)
.+..+|.
T Consensus 298 ~l~~l~~ 304 (457)
T 3bz5_A 298 QLYLLDC 304 (457)
T ss_dssp TCCEEEC
T ss_pred ccceecc
Confidence 6666654
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=3e-19 Score=203.47 Aligned_cols=286 Identities=15% Similarity=0.096 Sum_probs=178.0
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~ 475 (725)
..+++|.+..+....++.. .+.++++|++|++++|.+... .|..|.++++|++|+|+ +|. +..+ |.
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~i---~~~~~~~l~~L~~L~Ls------~n~-l~~~~p~ 98 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY---SFSNFSELQWLDLSRCEIETI---EDKAWHGLHHLSNLILT------GNP-IQSFSPG 98 (606)
T ss_dssp TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT------TCC-CCCCCTT
T ss_pred CCcCEEECCCCCcCEeChh---hccCCccCcEEeCCCCccccc---CHHHhhchhhcCEeECC------CCc-ccccChh
Confidence 6788888888777654432 234888899999988876533 46668888899999998 887 5554 77
Q ss_pred ccccCccccEEEeecCCCccccc-hhhhcCCCCcEeecCCCcccc-cccccccCCCcCcEEecCCCcccccCCcccCCCc
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLP-ETLCELYNLECLNVDDCQNLR-ELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 553 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~ 553 (725)
.++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 88889999999999888 66665 678889999999998887333 5788888899999999988855444455677777
Q ss_pred cCc----ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCccc-c
Q 036753 554 RLR----RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQ-A 628 (725)
Q Consensus 554 ~L~----~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~-~ 628 (725)
+|+ +|++..+......+.. + ...+|+.|++.+.... .......+.++++|+.+.+..+.+....... +
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~---~-~~~~L~~L~L~~n~~~---~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQA---F-QGIKLHELTLRGNFNS---SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTT---T-TTCEEEEEEEESCCSC---HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccccceeeccCCCcceeCccc---c-cCceeeeeeccCCccc---hhHHHHHhccccccccccccccccccCCccccc
Confidence 665 4554444333211111 1 2225777777764321 1333445666777777777654432210000 0
Q ss_pred ----------------cCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCC
Q 036753 629 ----------------GRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLP 692 (725)
Q Consensus 629 ----------------~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp 692 (725)
... .........+. +..+++|+.|+++++.... + | ++..+++|+.|++++|.. +.+|
T Consensus 251 ~~~~~~~l~~l~l~~l~l~-~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--l-~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLT-YTNDFSDDIVK-FHCLANVSAMSLAGVSIKY--L-E-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp CGGGGTTGGGSEEEEEEEC-CCTTCCGGGGS-CGGGTTCSEEEEESCCCCC--C-C-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred ChHHhhhhhhccHhheecc-ccccccccccc-cccCCCCCEEEecCccchh--h-h-hccccccCCEEEcccccC-cccc
Confidence 000 00000111111 4455677777777776655 5 4 566666777777776643 6666
Q ss_pred CCCCccccceeecccccCc
Q 036753 693 PLGKLKSLESLLIYGMQSV 711 (725)
Q Consensus 693 ~l~~lp~L~~L~L~~~~~l 711 (725)
.+ .+++|+.|++.+|..+
T Consensus 324 ~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp CC-CCSSCCEEEEESCSSC
T ss_pred cC-CCCccceeeccCCcCc
Confidence 55 5666666666555433
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=1.5e-19 Score=205.90 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=123.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-c
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-T 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~ 475 (725)
..+++|.+..+.+..++.. .+.++++|++|++++|.+... .|..|.++++|++|+|+ +|. +..+| .
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~---~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~L~------~n~-l~~~~~~ 122 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDK---AWHGLHHLSNLILTGNPIQSF---SPGSFSGLTSLENLVAV------ETK-LASLESF 122 (606)
T ss_dssp TTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCCC---CTTSSTTCTTCCEEECT------TSC-CCCSSSS
T ss_pred ccCcEEeCCCCcccccCHH---HhhchhhcCEeECCCCccccc---ChhhcCCcccCCEEEcc------CCc-ccccccc
Confidence 5789999988877654332 234899999999999986543 57779999999999999 888 66665 7
Q ss_pred ccccCccccEEEeecCCCcc--ccchhhhcCCCCcEeecCCCcccccccccccCCCcCc----EEecCCCcccccCCccc
Q 036753 476 NIEKLLHLKYLNLKGQKKIE--NLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLM----YLHNEDTGCLRYLPAGI 549 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~----~L~l~~~~~~~~lp~~i 549 (725)
.++++++|++|++++|. +. .+|..++++++|++|++++|......|..++.+++|+ .|++++| .+..+|...
T Consensus 123 ~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~ 200 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQA 200 (606)
T ss_dssp CCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTT
T ss_pred ccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC-CcceeCccc
Confidence 79999999999999999 65 5899999999999999999984444455677777665 8999999 456777766
Q ss_pred CCCccCcccCeEEEcC
Q 036753 550 GELIRLRRVREFVVGG 565 (725)
Q Consensus 550 ~~l~~L~~L~~~~~~~ 565 (725)
....+|++|++.++..
T Consensus 201 ~~~~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 201 FQGIKLHELTLRGNFN 216 (606)
T ss_dssp TTTCEEEEEEEESCCS
T ss_pred ccCceeeeeeccCCcc
Confidence 6666899988876643
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=2.4e-19 Score=197.10 Aligned_cols=272 Identities=20% Similarity=0.277 Sum_probs=123.8
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.....+. +.++++|+.|.+.+|.+.. ++. +.++++|++|+++ +|. +..+|.
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~----~~~-~~~l~~L~~L~L~------~n~-l~~~~~- 129 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD----ITP-LANLTNLTGLTLF------NNQ-ITDIDP- 129 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECC------SSC-CCCCGG-
T ss_pred cCCCEEECCCCccCCchh-----hhccccCCEEECCCCcccc----Chh-hcCCCCCCEEECC------CCC-CCCChH-
Confidence 345555555554443322 2255555555555555432 222 5555666666665 554 444443
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
++++++|++|++++|. +..+|. ++++++|++|++.++ +..++ .+.++++|++|++++|. +..++ .+..+++|+
T Consensus 130 ~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~ 202 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNK-VSDIS-VLAKLTNLE 202 (466)
T ss_dssp GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCS
T ss_pred HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCCc-CCCCh-hhccCCCCC
Confidence 5556666666666555 444442 333333333333211 11122 13444445555554442 22222 234444444
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcc-------ccc
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEE-------QAG 629 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~-------~~~ 629 (725)
+|++.++.... +..+..+++|+.|++....... ...+..+++|+.|++++|.+.+...- .+.
T Consensus 203 ~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 271 (466)
T 1o6v_A 203 SLIATNNQISD-----ITPLGILTNLDELSLNGNQLKD------IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271 (466)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred EEEecCCcccc-----cccccccCCCCEEECCCCCccc------chhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence 44443332221 1113333444444443322110 01233344444444444443221100 000
Q ss_pred CCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeeccccc
Q 036753 630 RRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 630 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
..... . ..+ ..+..+++|+.|++++|.+.. + +. +..+++|+.|+|++| .+..+++++.+++|+.|++++|+
T Consensus 272 l~~n~--l-~~~-~~~~~l~~L~~L~L~~n~l~~--~-~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 272 LGANQ--I-SNI-SPLAGLTALTNLELNENQLED--I-SP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CCSSC--C-CCC-GGGTTCTTCSEEECCSSCCSC--C-GG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCc--c-Ccc-ccccCCCccCeEEcCCCcccC--c-hh-hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCc
Confidence 00000 0 000 114556777777777776665 4 32 567777777777777 34445556777777777777774
Q ss_pred CceEe
Q 036753 710 SVKRV 714 (725)
Q Consensus 710 ~l~~i 714 (725)
+..+
T Consensus 343 -l~~~ 346 (466)
T 1o6v_A 343 -VSDV 346 (466)
T ss_dssp -CCCC
T ss_pred -cCCc
Confidence 5544
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=9.6e-20 Score=204.97 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=109.4
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT- 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~- 475 (725)
..+++|.+..+.+...+. ..+.++++|++|.+++|.+... .|..|.++++|++|+|+ +|. +..+|.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls------~n~-l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSRINTI---EGDAFYSLGSLEHLDLS------DNH-LSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECT------TSC-CCSCCHH
T ss_pred CCccEEECcCCccCccCh---hhhhcCCcccEEECCCCCcCcc---ChhhccccccCCEEECC------CCc-cCccCHH
Confidence 578888888777654332 2234788888888888876543 45667888888888888 777 555544
Q ss_pred ccccCccccEEEeecCCCcc--ccchhhhcCCCCcEeecCCCccccccc-ccccCCCcCcEEecCCCcccccCCcccCCC
Q 036753 476 NIEKLLHLKYLNLKGQKKIE--NLPETLCELYNLECLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPAGIGEL 552 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l 552 (725)
.++++++|++|++++|. +. ..|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 48888888888888887 65 346678888888888888887666666 467888888888888886555566667666
Q ss_pred ccCcccCeEE
Q 036753 553 IRLRRVREFV 562 (725)
Q Consensus 553 ~~L~~L~~~~ 562 (725)
++|++|++..
T Consensus 172 ~~L~~L~l~~ 181 (549)
T 2z81_A 172 RDIHHLTLHL 181 (549)
T ss_dssp SEEEEEEEEC
T ss_pred ccCceEeccc
Confidence 6555555443
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=211.88 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=119.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..+++|.+..+.+..... ..+.++++|++|++++|.... ...|..|.++++|++|+|+ +|.+....|..
T Consensus 24 ~~l~~LdLs~N~i~~i~~---~~~~~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls------~N~l~~~~p~~ 92 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLG------SSKIYFLHPDA 92 (844)
T ss_dssp TTCCEEEEESCCCCEECS---SSCSSCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECT------TCCCCEECTTS
T ss_pred CCcCEEECCCCcCCccCh---hHCcccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECC------CCcCcccCHhH
Confidence 688999998887764322 233489999999999885422 1126678999999999999 88833345888
Q ss_pred cccCccccEEEeecCCCccccchh--hhcCCCCcEeecCCCcccccc--cccccCCCcCcEEecCCCcccccCCcccCCC
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPET--LCELYNLECLNVDDCQNLREL--PRGIGKLRKLMYLHNEDTGCLRYLPAGIGEL 552 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~--i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l 552 (725)
++++++|++|+|++|.....+|.. ++++++|++|++++|. +..+ |..++++++|++|++++|......|..++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 999999999999999833346665 8899999999999998 4443 3468999999999999886555566667666
Q ss_pred --ccCcccCeEEEcCcC
Q 036753 553 --IRLRRVREFVVGGGY 567 (725)
Q Consensus 553 --~~L~~L~~~~~~~~~ 567 (725)
++|+.|.+..+....
T Consensus 172 ~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYS 188 (844)
T ss_dssp HHCSSCCCEECCSBSCC
T ss_pred cCCccceEECCCCcccc
Confidence 788888877665543
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=202.76 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=99.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.++++|.+..+.+...+... +.++++|++|++++|.+... .|..|.++++|++|+|+ +|. +..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls------~N~-l~~lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD---ILSLSKLRILIISHNRIQYL---DISVFKFNQELEYLDLS------HNK-LVKISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH---HTTCTTCCEEECCSSCCCEE---EGGGGTTCTTCCEEECC------SSC-CCEEECC
T ss_pred ccccEEECCCCcccccChhh---ccccccccEEecCCCccCCc---ChHHhhcccCCCEEecC------CCc-eeecCcc
Confidence 68889999888876554322 23889999999999986543 57778999999999999 888 7788876
Q ss_pred cccCccccEEEeecCCCccc--cchhhhcCCCCcEeecCCCcccccccccccCCCcC--cEEecCCCcc
Q 036753 477 IEKLLHLKYLNLKGQKKIEN--LPETLCELYNLECLNVDDCQNLRELPRGIGKLRKL--MYLHNEDTGC 541 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~ 541 (725)
.+++|++|++++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 88 --~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp --CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred --ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 78999999999998 654 67889999999999999987 443 346667777 8888877754
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=6.8e-19 Score=193.49 Aligned_cols=274 Identities=20% Similarity=0.231 Sum_probs=171.5
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.+++.|.+..+.....+. +.++++|++|.+++|.+.. ++. +.++++|++|+++ +|. +..+|.
T Consensus 90 ~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~----~~~-~~~l~~L~~L~l~------~n~-l~~~~~- 151 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP-----LANLTNLTGLTLFNNQITD----IDP-LKNLTNLNRLELS------SNT-ISDISA- 151 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC----CGG-GTTCTTCSEEEEE------EEE-ECCCGG-
T ss_pred ccCCEEECCCCccccChh-----hcCCCCCCEEECCCCCCCC----ChH-HcCCCCCCEEECC------CCc-cCCChh-
Confidence 578999998887765543 3489999999999998654 343 8999999999999 777 666653
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
++.+++|++|++++ . +..++. +.++++|++|++++|. +..++ .+.++++|++|++++|. +..+++ ++.+++|+
T Consensus 152 ~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 224 (466)
T 1o6v_A 152 LSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTNLD 224 (466)
T ss_dssp GTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCC
T ss_pred hccCCcccEeecCC-c-ccCchh-hccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-cccccc-ccccCCCC
Confidence 66677777777653 2 444443 6666677777776665 44444 35666666666666663 233322 45555666
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcc----cc---c
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEE----QA---G 629 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~----~~---~ 629 (725)
+|++.++.... +..+..+++|+.|++..+..... ..+..+++|+.|++++|.+++...- .+ .
T Consensus 225 ~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (466)
T 1o6v_A 225 ELSLNGNQLKD-----IGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISNISPLAGLTALTNLE 293 (466)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred EEECCCCCccc-----chhhhcCCCCCEEECCCCccccc------hhhhcCCCCCEEECCCCccCccccccCCCccCeEE
Confidence 66555443322 23444555555555544322110 0133444444444444443322110 00 0
Q ss_pred CCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeeccccc
Q 036753 630 RRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 630 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
..... . .. ...+..+++|+.|++++|.+.. .+| +..+++|+.|++++| .+..++.+..+++|+.|++++|+
T Consensus 294 L~~n~--l-~~-~~~~~~l~~L~~L~L~~n~l~~--~~~--~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 294 LNENQ--L-ED-ISPISNLKNLTYLTLYFNNISD--ISP--VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCSSC--C-SC-CGGGGGCTTCSEEECCSSCCSC--CGG--GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred cCCCc--c-cC-chhhcCCCCCCEEECcCCcCCC--chh--hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 00000 0 00 1125678999999999999877 523 678999999999999 56677889999999999999997
Q ss_pred CceEeCc
Q 036753 710 SVKRVGN 716 (725)
Q Consensus 710 ~l~~i~~ 716 (725)
+..+++
T Consensus 365 -l~~~~~ 370 (466)
T 1o6v_A 365 -ISDLTP 370 (466)
T ss_dssp -CCBCGG
T ss_pred -cCccch
Confidence 555544
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=2.3e-19 Score=187.98 Aligned_cols=266 Identities=19% Similarity=0.179 Sum_probs=201.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+..++.. .+.++++|+.|.+.+|.+... .|..|.++++|++|+|+ +|. +..+|..
T Consensus 54 ~~l~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~------~n~-l~~l~~~ 120 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKD---DFKGLQHLYALVLVNNKISKI---HEKAFSPLRKLQKLYIS------KNH-LVEIPPN 120 (332)
T ss_dssp TTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEE---CGGGSTTCTTCCEEECC------SSC-CCSCCSS
T ss_pred CCCeEEECCCCcCCccCHh---HhhCCCCCcEEECCCCccCcc---CHhHhhCcCCCCEEECC------CCc-CCccCcc
Confidence 5788999988877654332 234899999999999986543 47779999999999999 888 7888887
Q ss_pred cccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCccc--ccccccccCCCcCcEEecCCCcccccCCcccCCCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNL--RELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 553 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~ 553 (725)
+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...|..+..+ +|++|++++| .+..+|..+. +
T Consensus 121 ~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~ 193 (332)
T 2ft3_A 121 LP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--E 193 (332)
T ss_dssp CC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--S
T ss_pred cc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--C
Confidence 76 799999999999 787775 5899999999999999832 2456667777 9999999999 5677887765 6
Q ss_pred cCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCC
Q 036753 554 RLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRREN 633 (725)
Q Consensus 554 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 633 (725)
+|++|++.++..... ....+..+++|+.|++.+..-. ......+..+++|+.|+|++|.++
T Consensus 194 ~L~~L~l~~n~i~~~---~~~~l~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~------------ 254 (332)
T 2ft3_A 194 TLNELHLDHNKIQAI---ELEDLLRYSKLYRLGLGHNQIR----MIENGSLSFLPTLRELHLDNNKLS------------ 254 (332)
T ss_dssp SCSCCBCCSSCCCCC---CTTSSTTCTTCSCCBCCSSCCC----CCCTTGGGGCTTCCEEECCSSCCC------------
T ss_pred CCCEEECCCCcCCcc---CHHHhcCCCCCCEEECCCCcCC----cCChhHhhCCCCCCEEECCCCcCe------------
Confidence 899999887765542 2234667778888888764321 111235678899999999999853
Q ss_pred CchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccC------ccccceeEEcCCCCC-CcCCC--CCCccccceee
Q 036753 634 EEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMS------LTNLRDLSLFWWSNC-EHLPP--LGKLKSLESLL 704 (725)
Q Consensus 634 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~------l~~L~~L~L~~c~~~-~~lp~--l~~lp~L~~L~ 704 (725)
.++..+..+++|+.|++++|.+.. +++..+.. +++|+.|++.+|+.. ..+++ +..+++|+.|+
T Consensus 255 ------~lp~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 255 ------RVPAGLPDLKLLQVVYLHTNNITK--VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp ------BCCTTGGGCTTCCEEECCSSCCCB--CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred ------ecChhhhcCccCCEEECCCCCCCc--cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 233456778999999999999887 64555542 578999999999743 13333 78899999999
Q ss_pred ccccc
Q 036753 705 IYGMQ 709 (725)
Q Consensus 705 L~~~~ 709 (725)
+.+|.
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 99875
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=8e-19 Score=197.79 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=92.7
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+...+.. .+.++++|++|.+++|.+... .|..|.++++|++|+|+ +|. +..+|..
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls------~N~-l~~lp~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP---DISFLSELRVLRLSHNRIRSL---DFHVFLFNQDLEYLDVS------HNR-LQNISCC 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG---GTTTCTTCCEEECCSCCCCEE---CTTTTTTCTTCCEEECT------TSC-CCEECSC
T ss_pred CCcCEEECCCCCccccChh---hhccCCCccEEECCCCCCCcC---CHHHhCCCCCCCEEECC------CCc-CCccCcc
Confidence 5788888888877655432 234888899999998876543 46668888999999998 887 7788876
Q ss_pred cccCccccEEEeecCCCcccc--chhhhcCCCCcEeecCCCcccccccccccCCCcC--cEEecCCCcc
Q 036753 477 IEKLLHLKYLNLKGQKKIENL--PETLCELYNLECLNVDDCQNLRELPRGIGKLRKL--MYLHNEDTGC 541 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~ 541 (725)
.+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 119 --~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 --PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp --CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred --ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence 78889999999888 6665 4788889999999998887 332 234444444 7777766643
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-19 Score=188.05 Aligned_cols=226 Identities=17% Similarity=0.096 Sum_probs=112.6
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc---ccccccCccccEEEeecCCCccccchh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI---PTNIEKLLHLKYLNLKGQKKIENLPET 500 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l---p~~i~~l~~Lr~L~L~~~~~i~~lp~~ 500 (725)
++|+.|.+.++.+... .+..|.++++|++|+|+ +|. +..+ |..+..+++|++|++++|. +..+|..
T Consensus 28 ~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSL---PHGVFDKLTQLTKLSLS------SNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECC------SSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE
T ss_pred CCCCEEECCCCccCcc---CHhHhhccccCCEEECC------CCc-cCcccCcccccccccccCEEECCCCc-cccChhh
Confidence 4566666666654321 22235566666666666 554 3322 3445556666666666665 5556665
Q ss_pred hhcCCCCcEeecCCCcccccccc--cccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCcccccc
Q 036753 501 LCELYNLECLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKK 578 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 578 (725)
+.++++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++.++.... ......+..
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~ 173 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTE 173 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--GEECSCCTT
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--ccchhHHhh
Confidence 6666666666666665 444442 45566666666666664333334445555555555544332221 001112233
Q ss_pred CCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEee
Q 036753 579 LNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDE 658 (725)
Q Consensus 579 L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 658 (725)
+++|+.|++....- .......+..+++|+.|+|++|.+++... ..+..+++|+.|+|++
T Consensus 174 l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------------~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 174 LRNLTFLDLSQCQL----EQLSPTAFNSLSSLQVLNMSHNNFFSLDT-----------------FPYKCLNSLQVLDYSL 232 (306)
T ss_dssp CTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCSBCCS-----------------GGGTTCTTCCEEECTT
T ss_pred CcCCCEEECCCCCc----CCcCHHHhcCCCCCCEEECCCCccCccCh-----------------hhccCcccCCEeECCC
Confidence 33444444433211 01111234455566666666665322211 1234456666666666
Q ss_pred ecCCCCCcccccccCcc-ccceeEEcCCC
Q 036753 659 YRGRRNVVPKNWFMSLT-NLRDLSLFWWS 686 (725)
Q Consensus 659 ~~~~~~~~~p~~l~~l~-~L~~L~L~~c~ 686 (725)
|.+.. ..|..+..++ +|++|+|++|+
T Consensus 233 N~l~~--~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 233 NHIMT--SKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCCB--CSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCcc--cCHHHHHhhhccCCEEEccCCC
Confidence 66554 3355555553 66666666664
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=202.42 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=116.0
Q ss_pred EEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccc
Q 036753 400 LHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIE 478 (725)
Q Consensus 400 r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~ 478 (725)
+.+.+..+....+|..++ ++|+.|++++|.+... .|..|.++++|++|+|+ +|. +..+ |..++
T Consensus 3 ~~l~ls~n~l~~ip~~~~------~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls------~n~-l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS------QKTTILNISQNYISEL---WTSDILSLSKLRILIIS------HNR-IQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCSCC------TTCSEEECCSSCCCCC---CHHHHTTCTTCCEEECC------SSC-CCEEEGGGGT
T ss_pred ceEecCCCCccccccccc------ccccEEECCCCccccc---ChhhccccccccEEecC------CCc-cCCcChHHhh
Confidence 345666666665554432 7999999999986543 56779999999999999 888 5555 78899
Q ss_pred cCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccc-cccccccCCCcCcEEecCCCcccccCCcccCCCccC--
Q 036753 479 KLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLR-ELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL-- 555 (725)
Q Consensus 479 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L-- 555 (725)
++++|++|++++|. ++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.. .. ..++.+++|
T Consensus 67 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L 140 (520)
T 2z7x_B 67 FNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK--SSVLPIAHLNI 140 (520)
T ss_dssp TCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG--GGGGGGTTSCE
T ss_pred cccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch--hhcccccccee
Confidence 99999999999999 8899987 89999999999998433 4688999999999999999843 32 456677777
Q ss_pred cccCeEEEcC
Q 036753 556 RRVREFVVGG 565 (725)
Q Consensus 556 ~~L~~~~~~~ 565 (725)
++|++..+..
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 8888887765
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=207.25 Aligned_cols=280 Identities=16% Similarity=0.133 Sum_probs=191.5
Q ss_pred ceeEEEeeeecCCC-CcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc
Q 036753 397 KKILHLPLTLRRGA-SVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~ 475 (725)
..++.|.+..+... .++ ...+.++++|++|.+++|.+... .|..|.++++|++|+|+ +|.+...+|.
T Consensus 48 ~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls------~n~l~~~~~~ 115 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTID---KEAFRNLPNLRILDLGSSKIYFL---HPDAFQGLFHLFELRLY------FCGLSDAVLK 115 (844)
T ss_dssp CSCSEEEECTTCCCCEEC---TTTTSSCTTCCEEECTTCCCCEE---CTTSSCSCSSCCCEECT------TCCCSSCCST
T ss_pred ccCeEEeCCCCCCccccC---HHHhcCCCCCCEEECCCCcCccc---CHhHccCCcccCEeeCc------CCCCCccccc
Confidence 57788888776432 121 22345899999999999986543 57779999999999999 8884444565
Q ss_pred c--cccCccccEEEeecCCCcccc--chhhhcCCCCcEeecCCCcccccccccccCC--CcCcEEecCCCcccccCCccc
Q 036753 476 N--IEKLLHLKYLNLKGQKKIENL--PETLCELYNLECLNVDDCQNLRELPRGIGKL--RKLMYLHNEDTGCLRYLPAGI 549 (725)
Q Consensus 476 ~--i~~l~~Lr~L~L~~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L--~~L~~L~l~~~~~~~~lp~~i 549 (725)
. ++++++|++|+|++|. +..+ +..++++++|++|++++|......|..+..+ ++|+.|++++|......|..+
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp TCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred CccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch
Confidence 5 8999999999999998 6654 3579999999999999998555667777777 889999999987666667666
Q ss_pred CCCcc------CcccCeEEEcCcCCCccCcccc---------------------------------cc--CCCCCceEEe
Q 036753 550 GELIR------LRRVREFVVGGGYDRACSLGSL---------------------------------KK--LNFLQQCGIR 588 (725)
Q Consensus 550 ~~l~~------L~~L~~~~~~~~~~~~~~~~~L---------------------------------~~--L~~L~~L~i~ 588 (725)
+.+.+ |++|++..+......+..+... .. .++|+.|++.
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence 66655 8888877664322111111110 11 1345555554
Q ss_pred CcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCccc
Q 036753 589 GLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPK 668 (725)
Q Consensus 589 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p 668 (725)
.... .......+..+++|+.|+|+.|.++.. .+..+..+++|++|+|++|.+.. +.|
T Consensus 275 ~n~l----~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~~~l~~L~~L~Ls~N~l~~--~~~ 331 (844)
T 3j0a_A 275 HGFV----FSLNSRVFETLKDLKVLNLAYNKINKI-----------------ADEAFYGLDNLQVLNLSYNLLGE--LYS 331 (844)
T ss_dssp TCCC----CEECSCCSSSCCCCCEEEEESCCCCEE-----------------CTTTTTTCSSCCEEEEESCCCSC--CCS
T ss_pred CCcc----cccChhhhhcCCCCCEEECCCCcCCCC-----------------ChHHhcCCCCCCEEECCCCCCCc--cCH
Confidence 4221 111234456677888888888774221 12355667788888888887765 447
Q ss_pred ccccCccccceeEEcCCCCCCcCCC--CCCccccceeecccccCceEe
Q 036753 669 NWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQSVKRV 714 (725)
Q Consensus 669 ~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~~l~~i 714 (725)
.++..+++|+.|+|++| .+..+++ +..+++|+.|+|++|. +..+
T Consensus 332 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i 377 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTI 377 (844)
T ss_dssp CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCC
T ss_pred HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcc
Confidence 77778888888888887 4555554 6777888888887765 4433
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.1e-18 Score=190.99 Aligned_cols=238 Identities=22% Similarity=0.227 Sum_probs=146.1
Q ss_pred EEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cccccc
Q 036753 401 HLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEK 479 (725)
Q Consensus 401 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 479 (725)
.+.........+|..+ .++++.|.+++|.+... .+..|.++++|++|+|+ +|. +..+ |..+.+
T Consensus 58 ~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls------~n~-i~~~~~~~~~~ 121 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI------PSNTRYLNLMENNIQMI---QADTFRHLHHLEVLQLG------RNS-IRQIEVGAFNG 121 (452)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSCCCEE---CTTTTTTCTTCCEEECC------SSC-CCEECTTTTTT
T ss_pred EEEECCCCcCccCCCC------CCCccEEECcCCcCceE---CHHHcCCCCCCCEEECC------CCc-cCCcChhhccC
Confidence 3444444444444433 25788888888876543 45567888888888888 777 5554 466788
Q ss_pred CccccEEEeecCCCccccchh-hhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcccccCCcc-cCCCccCc
Q 036753 480 LLHLKYLNLKGQKKIENLPET-LCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLR 556 (725)
Q Consensus 480 l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~L~ 556 (725)
+++|++|+|++|. +..+|.. +.++++|++|++++|. +..+|. .+.++++|++|++++|..+..+|.. +..+++|+
T Consensus 122 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 122 LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp CTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred cccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 8888888888888 7777654 7778888888888887 666655 5778888888888887677776653 66777777
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCch
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEED 636 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 636 (725)
.|++.++.... +..+.. +++|+.|+|++|.+++.
T Consensus 200 ~L~L~~n~l~~-----~~~~~~----------------------------l~~L~~L~Ls~N~l~~~------------- 233 (452)
T 3zyi_A 200 YLNLGMCNIKD-----MPNLTP----------------------------LVGLEELEMSGNHFPEI------------- 233 (452)
T ss_dssp EEECTTSCCSS-----CCCCTT----------------------------CTTCCEEECTTSCCSEE-------------
T ss_pred EEECCCCcccc-----cccccc----------------------------cccccEEECcCCcCccc-------------
Confidence 77665443322 122333 44455555555542111
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeeccccc
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~ 709 (725)
.+..+..+++|+.|+|++|.+.. ++|.++..+++|+.|+|++| .+..+|. +..+++|+.|+|.+|+
T Consensus 234 ----~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 234 ----RPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----CGGGGTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ----CcccccCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 12334445555555555555544 33445555555555555555 3334443 4455555555555554
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=7.2e-19 Score=198.17 Aligned_cols=293 Identities=16% Similarity=0.061 Sum_probs=189.8
Q ss_pred eEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cccc
Q 036753 399 ILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNI 477 (725)
Q Consensus 399 ~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i 477 (725)
.+++.+..+....+|..+ .++|+.|++++|.+... .+..|.++++|++|+|+ +|. +..+ |..+
T Consensus 33 ~~~l~ls~~~L~~ip~~~------~~~L~~L~Ls~N~i~~~---~~~~~~~l~~L~~L~Ls------~N~-l~~~~~~~~ 96 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL------PPRTKALSLSQNSISEL---RMPDISFLSELRVLRLS------HNR-IRSLDFHVF 96 (562)
T ss_dssp CCEEECTTSCCCSCCTTS------CTTCCEEECCSSCCCCC---CGGGTTTCTTCCEEECC------SCC-CCEECTTTT
T ss_pred CcEEEcCCCCCccCCCCC------CCCcCEEECCCCCcccc---ChhhhccCCCccEEECC------CCC-CCcCCHHHh
Confidence 366777777776666543 27899999999987543 45679999999999999 888 6665 7789
Q ss_pred ccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccc--cccccCCCcCcEEecCCCcccccCCcccCCCccC
Q 036753 478 EKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLREL--PRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRL 555 (725)
Q Consensus 478 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L 555 (725)
+++++|++|++++|. ++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.. .. ..+..+++|
T Consensus 97 ~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L 169 (562)
T 3a79_B 97 LFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKF-RQ--LDLLPVAHL 169 (562)
T ss_dssp TTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBC-CT--TTTGGGTTS
T ss_pred CCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcc-cc--Cchhhhhhc
Confidence 999999999999999 8899987 89999999999998 6654 47899999999999999843 32 345666666
Q ss_pred --cccCeEEEcC--cCCCccCccccc-----------------------cCCCCCceEEeCcCCC---------------
Q 036753 556 --RRVREFVVGG--GYDRACSLGSLK-----------------------KLNFLQQCGIRGLGGV--------------- 593 (725)
Q Consensus 556 --~~L~~~~~~~--~~~~~~~~~~L~-----------------------~L~~L~~L~i~~~~~~--------------- 593 (725)
++|++..+.. ....+..+..+. .+++|+.+++......
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 8888887755 222222222221 3444555555432100
Q ss_pred -------------CChhhhhhhccccccccCcEEEEecCCCCCCccccc--------------CCCCCchhHHHHhhhc-
Q 036753 594 -------------SDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAG--------------RRENEEDEDERLLEAL- 645 (725)
Q Consensus 594 -------------~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~l- 645 (725)
.......... ....+|+.|+++.|.+.+..+..+. ...............+
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh
Confidence 0000000011 1123788888888876532221110 0000000000001111
Q ss_pred ---------------------CCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCC---C-CCCcccc
Q 036753 646 ---------------------GPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLP---P-LGKLKSL 700 (725)
Q Consensus 646 ---------------------~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp---~-l~~lp~L 700 (725)
..+++|++|++++|.+.. ..|.++..+++|+.|+|++| .++.++ . ++.+++|
T Consensus 329 ~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSL 405 (562)
T ss_dssp HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTC
T ss_pred ccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCC
Confidence 456788888888887765 33777778888888888887 455444 2 6778888
Q ss_pred ceeecccccCceE-eCcccc
Q 036753 701 ESLLIYGMQSVKR-VGNELS 719 (725)
Q Consensus 701 ~~L~L~~~~~l~~-i~~~~~ 719 (725)
+.|++++|. +.. +|...+
T Consensus 406 ~~L~l~~N~-l~~~~~~~~~ 424 (562)
T 3a79_B 406 ETLDVSLNS-LNSHAYDRTC 424 (562)
T ss_dssp CEEECTTSC-CBSCCSSCCC
T ss_pred CEEECCCCc-CCCccChhhh
Confidence 888888777 444 666544
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=188.59 Aligned_cols=166 Identities=20% Similarity=0.270 Sum_probs=111.3
Q ss_pred EEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cccccc
Q 036753 401 HLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEK 479 (725)
Q Consensus 401 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 479 (725)
.+.........+|..+ .++++.|.+.+|.+... .+..|.++++|++|+|+ +|. +..+ |..+.+
T Consensus 47 ~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls------~n~-i~~i~~~~~~~ 110 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI------STNTRLLNLHENQIQII---KVNSFKHLRHLEILQLS------RNH-IRTIEIGAFNG 110 (440)
T ss_dssp EEECCSCCCSSCCSCC------CTTCSEEECCSCCCCEE---CTTTTSSCSSCCEEECC------SSC-CCEECGGGGTT
T ss_pred EEEeCCCCcCcCCCCC------CCCCcEEEccCCcCCee---CHHHhhCCCCCCEEECC------CCc-CCccChhhccC
Confidence 3444444444455433 25788888888876543 34567888888888888 777 5554 356788
Q ss_pred CccccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcccccCCc-ccCCCccCc
Q 036753 480 LLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLR 556 (725)
Q Consensus 480 l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~ 556 (725)
+++|++|+|++|. ++.+|. .+.++++|++|++++|. +..+|. .+.++++|++|++++|..+..++. .+..+++|+
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 8888888888887 777765 57888888888888887 555555 577888888888888766666665 467777777
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeC
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRG 589 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~ 589 (725)
+|++.++.... +..+..+++|+.|++.+
T Consensus 189 ~L~L~~n~l~~-----~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 189 YLNLAMCNLRE-----IPNLTPLIKLDELDLSG 216 (440)
T ss_dssp EEECTTSCCSS-----CCCCTTCSSCCEEECTT
T ss_pred eecCCCCcCcc-----ccccCCCcccCEEECCC
Confidence 77765544332 22334444444444443
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.1e-18 Score=191.11 Aligned_cols=200 Identities=21% Similarity=0.222 Sum_probs=145.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+..++.. .+.++++|+.|.+++|.+... .+..|.++++|++|+|+ +|. +..+|..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~---~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~ 141 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD---TFRHLHHLEVLQLGRNSIRQI---EVGAFNGLASLNTLELF------DNW-LTVIPSG 141 (452)
T ss_dssp TTCSEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECC------SSC-CSBCCTT
T ss_pred CCccEEECcCCcCceECHH---HcCCCCCCCEEECCCCccCCc---ChhhccCcccCCEEECC------CCc-CCccChh
Confidence 5889999998887654332 334899999999999987543 45678999999999999 888 7777654
Q ss_pred -cccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcccCCCc
Q 036753 477 -IEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELI 553 (725)
Q Consensus 477 -i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~l~ 553 (725)
++.+++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|.. +..+++|++|++++| .+..+| .+..++
T Consensus 142 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~ 218 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLV 218 (452)
T ss_dssp TSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCT
T ss_pred hhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccc
Confidence 8899999999999999 777775 7899999999999998878888874 889999999999999 556665 478888
Q ss_pred cCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecC
Q 036753 554 RLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDR 619 (725)
Q Consensus 554 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 619 (725)
+|++|++.++.... .....+..+++|+.|++.+... .......+..+++|+.|+|++|.
T Consensus 219 ~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 219 GLEELEMSGNHFPE---IRPGSFHGLSSLKKLWVMNSQV----SLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TCCEEECTTSCCSE---ECGGGGTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSC
T ss_pred cccEEECcCCcCcc---cCcccccCccCCCEEEeCCCcC----ceECHHHhcCCCCCCEEECCCCc
Confidence 88888876654432 1122344455555555543221 01111223444555555555554
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=2.8e-18 Score=198.21 Aligned_cols=250 Identities=16% Similarity=0.089 Sum_probs=167.6
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccch-hhh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPE-TLC 502 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~-~i~ 502 (725)
+++++|.+++|.+... .+..|.++++|++|+|+ +|.+....|..++++++|++|++++|. +..+|. .++
T Consensus 25 ~~l~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls------~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL---PAANFTRYSQLTSLDVG------FNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCCC---CGGGGGGGTTCSEEECC------SSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCcEEECCCCCCCCc---CHHHHhCCCcCcEEECC------CCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhc
Confidence 6899999999986543 45569999999999999 888334457779999999999999998 888887 699
Q ss_pred cCCCCcEeecCCCccccccc-ccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 503 ELYNLECLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 503 ~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++..+......+..+ ....+++
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~ 172 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL-DIFANSS 172 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTTCE
T ss_pred cCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh-hcccccc
Confidence 99999999999998 56665 569999999999999996655566778999999999987765443111111 1224567
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEE---------------------------EEecCCCCCCcccccCCCCC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLG---------------------------LHFDRIRDGDEEQAGRRENE 634 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~---------------------------L~~~~l~~~~~~~~~~~~~~ 634 (725)
|+.|++..... .. .....+..+.+|+.|+ ++++.+.+..
T Consensus 173 L~~L~L~~n~l-~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~---------- 238 (680)
T 1ziw_A 173 LKKLELSSNQI-KE---FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS---------- 238 (680)
T ss_dssp ESEEECTTCCC-CC---BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC----------
T ss_pred ccEEECCCCcc-cc---cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC----------
Confidence 77777765422 11 1112233444444444 4444321110
Q ss_pred chhHHHHhhhcCCC--CCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeecccc
Q 036753 635 EDEDERLLEALGPP--PNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGM 708 (725)
Q Consensus 635 ~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~ 708 (725)
+..+..+ ++|+.|+|++|.+.. ++|.++..+++|++|+|++|...+..|. ++.+++|+.|++.++
T Consensus 239 -------~~~~~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 239 -------NTTFLGLKWTNLTMLDLSYNNLNV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp -------TTTTGGGGGSCCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred -------hhHhhccCcCCCCEEECCCCCcCc--cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 1122222 346666666666555 4355666666666776666643333333 666666777666654
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=189.55 Aligned_cols=151 Identities=24% Similarity=0.290 Sum_probs=77.5
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT- 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~- 475 (725)
..++.|.+..+.+..++.. .+.++++|+.|.+++|.+... .+..|.++++|++|+|+ +|. +..+|.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~---~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~ 130 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN---SFKHLRHLEILQLSRNHIRTI---EIGAFNGLANLNTLELF------DNR-LTTIPNG 130 (440)
T ss_dssp TTCSEEECCSCCCCEECTT---TTSSCSSCCEEECCSSCCCEE---CGGGGTTCSSCCEEECC------SSC-CSSCCTT
T ss_pred CCCcEEEccCCcCCeeCHH---HhhCCCCCCEEECCCCcCCcc---ChhhccCCccCCEEECC------CCc-CCeeCHh
Confidence 3455555555554432221 123555566666665554322 23445555666666665 555 444443
Q ss_pred ccccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcccccCCcccCCCc
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAGIGELI 553 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~ 553 (725)
.+..+++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+.++++|++|++++| .+..+| .+..++
T Consensus 131 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~ 207 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLI 207 (440)
T ss_dssp TSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCS
T ss_pred HhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCc
Confidence 35555666666666655 444443 455566666666665544555544 2455556666666555 334444 245555
Q ss_pred cCcccCeEEE
Q 036753 554 RLRRVREFVV 563 (725)
Q Consensus 554 ~L~~L~~~~~ 563 (725)
+|++|++.++
T Consensus 208 ~L~~L~Ls~N 217 (440)
T 3zyj_A 208 KLDELDLSGN 217 (440)
T ss_dssp SCCEEECTTS
T ss_pred ccCEEECCCC
Confidence 5555554433
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=8.5e-19 Score=185.38 Aligned_cols=259 Identities=17% Similarity=0.161 Sum_probs=196.7
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+..++.. .+.++++|++|.+.+|.+... .+..|.++++|++|+|+ +|. +..+|..
T Consensus 52 ~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls------~n~-l~~~~~~ 118 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS---DLQRCVNLQALVLTSNGINTI---EEDSFSSLGSLEHLDLS------YNY-LSNLSSS 118 (353)
T ss_dssp TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECC------SSC-CSSCCHH
T ss_pred ccCcEEECCCCcCcccCHH---HhccCCCCCEEECCCCccCcc---CHhhcCCCCCCCEEECC------CCc-CCcCCHh
Confidence 5899999988887755442 234899999999999986543 45668999999999999 888 7778766
Q ss_pred -cccCccccEEEeecCCCccccch--hhhcCCCCcEeecCCCcccccc-cccccCCCcCcEEecCCCcccccCCcccCCC
Q 036753 477 -IEKLLHLKYLNLKGQKKIENLPE--TLCELYNLECLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGCLRYLPAGIGEL 552 (725)
Q Consensus 477 -i~~l~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l 552 (725)
++++++|++|++++|. ++.+|. .+.++++|++|++++|..+..+ |..+.++++|++|++++|......|..++.+
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 8999999999999998 888987 7899999999999999556666 4578999999999999996655568889999
Q ss_pred ccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCC
Q 036753 553 IRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRE 632 (725)
Q Consensus 553 ~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 632 (725)
++|++|++..+..... + -..+..+++|+.|++.+..-... .............++.++|..+.+++
T Consensus 198 ~~L~~L~l~~n~l~~~-~--~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~~~~l~~l~L~~~~l~~---------- 263 (353)
T 2z80_A 198 QNVSHLILHMKQHILL-L--EIFVDVTSSVECLELRDTDLDTF-HFSELSTGETNSLIKKFTFRNVKITD---------- 263 (353)
T ss_dssp SEEEEEEEECSCSTTH-H--HHHHHHTTTEEEEEEESCBCTTC-CCC------CCCCCCEEEEESCBCCH----------
T ss_pred ccCCeecCCCCccccc-h--hhhhhhcccccEEECCCCccccc-cccccccccccchhhccccccccccC----------
Confidence 9999999887664321 1 11234578888888877543211 11111223345678889998887421
Q ss_pred CCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCccccc-ccCccccceeEEcCCCCCC
Q 036753 633 NEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNW-FMSLTNLRDLSLFWWSNCE 689 (725)
Q Consensus 633 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~-l~~l~~L~~L~L~~c~~~~ 689 (725)
.....+++.+..+++|+.|+|++|.+.. + |.+ +..+++|++|+|++|+...
T Consensus 264 ---~~l~~l~~~l~~l~~L~~L~Ls~N~l~~--i-~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 264 ---ESLFQVMKLLNQISGLLELEFSRNQLKS--V-PDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ---HHHHHHHHHHHTCTTCCEEECCSSCCCC--C-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred ---cchhhhHHHHhcccCCCEEECCCCCCCc--c-CHHHHhcCCCCCEEEeeCCCccC
Confidence 1234567778889999999999999987 8 555 5899999999999996433
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=7.9e-18 Score=183.68 Aligned_cols=232 Identities=19% Similarity=0.172 Sum_probs=184.5
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
++++|++|.++++.+.. +| .+..+++|++|+|+ +|. +..+| ++.+++|++|++++|. ++.+| +
T Consensus 40 ~l~~L~~L~Ls~n~l~~----~~-~l~~l~~L~~L~Ls------~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD----MT-GIEKLTGLTKLICT------SNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSCCCC----CT-TGGGCTTCSEEECC------SSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC--C
T ss_pred HcCCCCEEEccCCCccc----Ch-hhcccCCCCEEEcc------CCc-CCeEc--cccCCCCCEEECcCCC-Cceee--c
Confidence 78999999999998654 35 48999999999999 888 77776 8999999999999999 88886 8
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
+++++|++|++++|. +..+| ++.+++|++|++++| .+..++ ++.+++|++|++..+.... .+ .+..+++
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~----~~-~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT----KL-DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC----CC-CCTTCTT
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc----cc-ccccCCc
Confidence 999999999999998 77776 899999999999999 455554 7889999999887664332 12 4677888
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRG 661 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 661 (725)
|+.|++....-. . . .+..+++|+.|++++|.+++. .+..+++|+.|++++|.+
T Consensus 172 L~~L~ls~n~l~-~----l--~l~~l~~L~~L~l~~N~l~~~--------------------~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 172 LTTLDCSFNKIT-E----L--DVSQNKLLNRLNCDTNNITKL--------------------DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CCEEECCSSCCC-C----C--CCTTCTTCCEEECCSSCCSCC--------------------CCTTCTTCSEEECCSSCC
T ss_pred CCEEECCCCccc-e----e--ccccCCCCCEEECcCCcCCee--------------------ccccCCCCCEEECcCCcc
Confidence 999888775321 1 1 267889999999999984221 266789999999999999
Q ss_pred CCCCcccccccCccccceeEEcCCCCCCcCCCCCCcc----------ccceeecccccCceEeC
Q 036753 662 RRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLK----------SLESLLIYGMQSVKRVG 715 (725)
Q Consensus 662 ~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp----------~L~~L~L~~~~~l~~i~ 715 (725)
.. + | +..+++|+.|++++|. +..+| ++.++ +|+.|++++|+.+..+|
T Consensus 225 ~~--i-p--~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 225 TE--I-D--VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp SC--C-C--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred cc--c-C--ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 88 7 6 7789999999999994 55555 34444 44566777776666665
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=193.47 Aligned_cols=145 Identities=18% Similarity=0.143 Sum_probs=113.2
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-c
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-T 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~ 475 (725)
..+++|.+..+....++.. .+.++++|++|++++|.+... .+..|.++++|++|+|+ +|. +..+| .
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~ 94 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT------GNP-IQSLALG 94 (570)
T ss_dssp SSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT------TCC-CCEECTT
T ss_pred ccccEEEccCCccCccChh---HhhCCCCceEEECCCCcCCcc---CcccccCchhCCEEeCc------CCc-CCccCHh
Confidence 5788999988877654332 234899999999999976543 45668899999999999 888 65554 6
Q ss_pred ccccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccc-cccccccCCCcCcEEecCCCcccccCCcccCCCc
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLR-ELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELI 553 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~ 553 (725)
.++.+++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 78999999999999998 887775 68999999999999988333 4788899999999999998854443445677676
Q ss_pred cC
Q 036753 554 RL 555 (725)
Q Consensus 554 ~L 555 (725)
+|
T Consensus 174 ~L 175 (570)
T 2z63_A 174 QM 175 (570)
T ss_dssp TC
T ss_pred cc
Confidence 66
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=7.8e-20 Score=190.18 Aligned_cols=247 Identities=12% Similarity=0.051 Sum_probs=180.3
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+++|+.|++++|.+... .|..|..+++|++|+|+ +|. +...+. +..+++|++|++++|. ++.+|.
T Consensus 32 ~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls------~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~-- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLS------SNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV-- 97 (317)
T ss_dssp TGGGCSEEECTTSCCCCC---CHHHHTTCTTCCEEECT------TSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEEE--
T ss_pred cCCCCCEEECcCCccCcC---CHHHhhCCCcCCEEECC------CCc-CCcchh-hhhcCCCCEEECcCCc-cccccC--
Confidence 677899999999986543 56778999999999999 888 655554 8899999999999998 777763
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCcccc-ccCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSL-KKLN 580 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L-~~L~ 580 (725)
+++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|++|++.++..... ....+ ..++
T Consensus 98 --~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~l~ 169 (317)
T 3o53_A 98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV---NFAELAASSD 169 (317)
T ss_dssp --CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE---EGGGGGGGTT
T ss_pred --CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc---cHHHHhhccC
Confidence 4899999999998 6666543 478899999999854443345688888999988876654431 12223 3577
Q ss_pred CCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeec
Q 036753 581 FLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYR 660 (725)
Q Consensus 581 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 660 (725)
+|+.|++....-. .. .....+++|+.|+|++|.+++ ++..+..+++|+.|++++|.
T Consensus 170 ~L~~L~L~~N~l~-~~-----~~~~~l~~L~~L~Ls~N~l~~------------------l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 170 TLEHLNLQYNFIY-DV-----KGQVVFAKLKTLDLSSNKLAF------------------MGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp TCCEEECTTSCCC-EE-----ECCCCCTTCCEEECCSSCCCE------------------ECGGGGGGTTCSEEECTTSC
T ss_pred cCCEEECCCCcCc-cc-----ccccccccCCEEECCCCcCCc------------------chhhhcccCcccEEECcCCc
Confidence 7888887764321 11 223357889999999887532 12335567889999999998
Q ss_pred CCCCCcccccccCccccceeEEcCCCCC-CcCCC-CCCccccceeecccccCceEeCcc
Q 036753 661 GRRNVVPKNWFMSLTNLRDLSLFWWSNC-EHLPP-LGKLKSLESLLIYGMQSVKRVGNE 717 (725)
Q Consensus 661 ~~~~~~~p~~l~~l~~L~~L~L~~c~~~-~~lp~-l~~lp~L~~L~L~~~~~l~~i~~~ 717 (725)
+.. + |.++..+++|+.|+|++|+.. ..+|. ++.+++|+.|++.++..++..++.
T Consensus 226 l~~--l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 226 LVL--I-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCE--E-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccc--h-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 887 7 777888899999999988644 34554 778888888888877666544433
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=1.7e-18 Score=194.70 Aligned_cols=132 Identities=16% Similarity=0.160 Sum_probs=112.7
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchh-h
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPET-L 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i 501 (725)
++|++|++++|.+... .|..|.++++|++|+|+ +|. +..+ |..++++++|++|++++|. +..+|.. +
T Consensus 26 ~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls------~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI---GHGDLRACANLQVLILK------SSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWF 94 (549)
T ss_dssp TTCCEEECCSSCCCEE---CSSTTSSCTTCCEEECT------TSC-CCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHH
T ss_pred CCccEEECcCCccCcc---ChhhhhcCCcccEEECC------CCC-cCccChhhccccccCCEEECCCCc-cCccCHHHh
Confidence 6899999999986543 45668999999999999 888 5555 5779999999999999999 7777765 9
Q ss_pred hcCCCCcEeecCCCcccc--cccccccCCCcCcEEecCCCcccccCC-cccCCCccCcccCeEEEcCcC
Q 036753 502 CELYNLECLNVDDCQNLR--ELPRGIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVREFVVGGGY 567 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~ 567 (725)
+++++|++|++++|. +. ..|..++++++|++|++++|..+..+| ..++.+++|++|++.++....
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 999999999999998 55 457789999999999999997667776 579999999999998877654
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=2e-19 Score=186.67 Aligned_cols=205 Identities=20% Similarity=0.207 Sum_probs=122.0
Q ss_pred cCCcceEEEeccccCCCcccccccccccc--ccCccccEEEeecCCCccccchhhhcC-----CCCcEeecCCCcccccc
Q 036753 449 KLTCLRALELQVRESWPRNSLIKEIPTNI--EKLLHLKYLNLKGQKKIENLPETLCEL-----YNLECLNVDDCQNLREL 521 (725)
Q Consensus 449 ~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i--~~l~~Lr~L~L~~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~l 521 (725)
++++|++|+|+ +|.+...+|..+ +.+++|++|++++|. +..+|..++++ ++|++|++++|. +..+
T Consensus 93 ~l~~L~~L~L~------~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~ 164 (312)
T 1wwl_A 93 GISGLQELTLE------NLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNF 164 (312)
T ss_dssp TTSCCCEEEEE------EEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCC
T ss_pred CcCCccEEEcc------CCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccc
Confidence 45555555555 554222444443 555555555555555 44445555544 555555555555 3333
Q ss_pred c-ccccCCCcCcEEecCCCccccc--CCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhh
Q 036753 522 P-RGIGKLRKLMYLHNEDTGCLRY--LPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGE 598 (725)
Q Consensus 522 p-~~i~~L~~L~~L~l~~~~~~~~--lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~ 598 (725)
| ..++++++|++|++++|...+. +|..+ .+..+++|+.|++....- .....
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------~~~~l~~L~~L~L~~N~l-~~~~~ 218 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISAL-------------------------CPLKFPTLQVLALRNAGM-ETPSG 218 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHS-------------------------CTTSCTTCCEEECTTSCC-CCHHH
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHH-------------------------HhccCCCCCEEECCCCcC-cchHH
Confidence 2 4455555555555555532211 11111 013445555555554321 11111
Q ss_pred hhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccc
Q 036753 599 AARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLR 678 (725)
Q Consensus 599 ~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~ 678 (725)
.....+..+++|+.|+|++|.+++..+ ...+..+++|++|+|++|.+.. + |.++. ++|+
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~l~~L~~L~Ls~N~l~~--i-p~~~~--~~L~ 277 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSLRDAAG----------------APSCDWPSQLNSLNLSFTGLKQ--V-PKGLP--AKLS 277 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCCCSSCC----------------CSCCCCCTTCCEEECTTSCCSS--C-CSSCC--SEEE
T ss_pred HHHHHHhcCCCCCEEECCCCcCCcccc----------------hhhhhhcCCCCEEECCCCccCh--h-hhhcc--CCce
Confidence 112233567899999999998644321 1234457899999999999987 8 77775 8999
Q ss_pred eeEEcCCCCCCcCCCCCCccccceeeccccc
Q 036753 679 DLSLFWWSNCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 679 ~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
+|+|++| .++.+|.+..+++|++|++++++
T Consensus 278 ~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 278 VLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred EEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 9999999 56777889999999999999987
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=2.8e-19 Score=196.98 Aligned_cols=246 Identities=12% Similarity=0.036 Sum_probs=177.0
Q ss_pred cccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecC
Q 036753 412 VPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQ 491 (725)
Q Consensus 412 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~ 491 (725)
+|..+......+++|+.|++++|.+... .|..|..+++|++|+|+ +|. +...+. ++.+++|++|+|++|
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls------~N~-l~~~~~-l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLS------SNV-LYETLD-LESLSTLRTLDLNNN 90 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCC---CGGGGTTCTTCCEEECT------TSC-CEEEEE-CTTCTTCCEEECCSS
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCC---CHHHHhCCCCCCEEEee------CCC-CCCCcc-cccCCCCCEEEecCC
Confidence 3444443334566899999999986543 56678999999999999 888 555544 889999999999999
Q ss_pred CCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCcc
Q 036753 492 KKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRAC 571 (725)
Q Consensus 492 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~ 571 (725)
. ++.+|. .++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|++|++.++.....
T Consensus 91 ~-l~~l~~----~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--- 159 (487)
T 3oja_A 91 Y-VQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--- 159 (487)
T ss_dssp E-EEEEEE----CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE---
T ss_pred c-CCCCCC----CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc---
Confidence 8 877774 3899999999998 6666543 578899999999865555566788889999988876655431
Q ss_pred Cccccc-cCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCC
Q 036753 572 SLGSLK-KLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPN 650 (725)
Q Consensus 572 ~~~~L~-~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 650 (725)
....+. .+++|+.|++++..-. .. .....+++|+.|+|++|.+++ ++..+..+++
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~-~~-----~~~~~l~~L~~L~Ls~N~l~~------------------~~~~~~~l~~ 215 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIY-DV-----KGQVVFAKLKTLDLSSNKLAF------------------MGPEFQSAAG 215 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCC-EE-----ECCCCCTTCCEEECCSSCCCE------------------ECGGGGGGTT
T ss_pred ChHHHhhhCCcccEEecCCCccc-cc-----cccccCCCCCEEECCCCCCCC------------------CCHhHcCCCC
Confidence 122333 5777888777764321 11 233457888888888887532 1223556788
Q ss_pred CCcEEEeeecCCCCCcccccccCccccceeEEcCCCCC-CcCCC-CCCccccceeecc
Q 036753 651 LKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNC-EHLPP-LGKLKSLESLLIY 706 (725)
Q Consensus 651 L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~-~~lp~-l~~lp~L~~L~L~ 706 (725)
|+.|+|++|.+.. + |.++..+++|+.|++++|+.. ..+|. ++.++.|+.|.+.
T Consensus 216 L~~L~Ls~N~l~~--l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 216 VTWISLRNNKLVL--I-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CSEEECTTSCCCE--E-CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccEEEecCCcCcc--c-chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8888888888877 7 777888888888888888643 35554 6778888887775
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=3.6e-18 Score=176.77 Aligned_cols=231 Identities=18% Similarity=0.142 Sum_probs=180.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..+++|.+..+.+..++...+ .++++|+.|.+.+|.+..... .+..+..+++|++|+|+ +|. +..+|..
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~---~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls------~n~-i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVF---DKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLS------FNG-VITMSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTT---TTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECC------SCS-EEEEEEE
T ss_pred CCCCEEECCCCccCccCHhHh---hccccCCEEECCCCccCcccC-cccccccccccCEEECC------CCc-cccChhh
Confidence 589999999888776665433 489999999999998753322 35567889999999999 888 7889988
Q ss_pred cccCccccEEEeecCCCccccch--hhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccc-cCCcccCCCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPE--TLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLR-YLPAGIGELI 553 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~l~ 553 (725)
+..+++|++|++++|. +..+|. .+.++++|++|++++|......|..+..+++|++|++++|.... .+|..+..++
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 9999999999999999 887774 78999999999999998555666778999999999999995443 4788899999
Q ss_pred cCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCC
Q 036753 554 RLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRREN 633 (725)
Q Consensus 554 ~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 633 (725)
+|++|++.++..... ....+..+++|+.|++.+.... ......+..+++|+.|+|++|.+.+..
T Consensus 176 ~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~--------- 239 (306)
T 2z66_A 176 NLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNMSHNNFF----SLDTFPYKCLNSLQVLDYSLNHIMTSK--------- 239 (306)
T ss_dssp TCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCS----BCCSGGGTTCTTCCEEECTTSCCCBCS---------
T ss_pred CCCEEECCCCCcCCc---CHHHhcCCCCCCEEECCCCccC----ccChhhccCcccCCEeECCCCCCcccC---------
Confidence 999999887665432 2234567788888888764321 111234677899999999999864332
Q ss_pred CchhHHHHhhhcCCC-CCCCcEEEeeecCCC
Q 036753 634 EEDEDERLLEALGPP-PNLKNLGIDEYRGRR 663 (725)
Q Consensus 634 ~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~ 663 (725)
+..+..+ ++|+.|+|++|.+..
T Consensus 240 --------~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 240 --------KQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp --------SSSCCCCCTTCCEEECTTCCEEC
T ss_pred --------HHHHHhhhccCCEEEccCCCeec
Confidence 2345555 599999999998765
No 58
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=189.91 Aligned_cols=178 Identities=19% Similarity=0.262 Sum_probs=135.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhh-hccc-cceeeeecCCCccHHHHHHH
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDV-KKHF-DERIWVCVSEPFDEFRIARA 255 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~l~~~ 255 (725)
+.+|||+.++++|.++|.... ++.++|+|+||||+||||||+.+|++.++ +.+| +.++|+++++.. ...+...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~ 198 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMK 198 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHH
Confidence 469999999999999997542 36899999999999999999999998766 8899 579999998752 2222222
Q ss_pred H---HHHhcCC------CC------------------CC--------h--------------------------------
Q 036753 256 V---IEALKSG------DA------------------SN--------F-------------------------------- 268 (725)
Q Consensus 256 i---~~~l~~~------~~------------------~~--------W-------------------------------- 268 (725)
+ +..+... .. .. |
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~ 278 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKY 278 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEE
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCce
Confidence 2 2232210 00 00 0
Q ss_pred ------------------------------------------------------hh------------------------
Q 036753 269 ------------------------------------------------------EA------------------------ 270 (725)
Q Consensus 269 ------------------------------------------------------~~------------------------ 270 (725)
..
T Consensus 279 ~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~ 358 (591)
T 1z6t_A 279 VVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSS 358 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCS
T ss_pred EeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccc
Confidence 00
Q ss_pred -hhhhhhhhhhhcccCCchhhhhhhhhcccCCCCCccCHHHHHHHHHHcCCcccCCCccHHHHHHHHHHHHHhCCCcccc
Q 036753 271 -IEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSFFQDF 349 (725)
Q Consensus 271 -~~~~i~~~L~lSy~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~ 349 (725)
....+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.+..++++|+++||++..
T Consensus 359 ~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~ 427 (591)
T 1z6t_A 359 YDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCD 427 (591)
T ss_dssp SCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEE
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEe
Confidence 012466788999999999999999999999999999999999999653 23468899999999999865
Q ss_pred cCCCCCceeEeecchhHHHHHHHhh
Q 036753 350 DKGDDGEIYKCKMHDIVHDFAQYLC 374 (725)
Q Consensus 350 ~~~~~~~~~~~~mhdl~~dla~~i~ 374 (725)
.. +....|+||++++++++...
T Consensus 428 ~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 428 RN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EE---TTEEEEECCHHHHHHHHHHT
T ss_pred cC---CCccEEEEcHHHHHHHHhhh
Confidence 32 34457899999999998773
No 59
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.74 E-value=5.6e-18 Score=145.00 Aligned_cols=81 Identities=31% Similarity=0.455 Sum_probs=76.8
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHHHhhhhhhhhh
Q 036753 4 AFISPLLQQLTSMAVEEAKEQVRLVTGVGKEVEKLTSNLRAIQAVLHDAEKR--QVKDETVKLWLDQLRDACYDMEDVLG 81 (725)
Q Consensus 4 ~~v~~~~~kl~~~l~~~~~~e~~~~~~v~~~~~~L~~~L~~i~~~L~~ae~~--~~~~~~~~~wl~~lr~~aydaeD~lD 81 (725)
|+|+++++||++ ++.+|+.++.||+++++.|+++|++|++||.||+.+ +..+++++.|+++||++||||||+||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999 999999999999999999999999999999999998 56899999999999999999999999
Q ss_pred hhhhHHH
Q 036753 82 EWSTARL 88 (725)
Q Consensus 82 ~~~~~~~ 88 (725)
+|.|+..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999874
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=8e-18 Score=192.71 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=107.2
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT- 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~- 475 (725)
..+++|.+..+.+..++... +.++++|++|++++|.+..+ .+..|.++++|++|+|+ +|. +..+|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~---f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls------~N~-l~~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT------GNP-IQSLALG 118 (635)
T ss_dssp TTCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT------TCC-CCEECGG
T ss_pred cCCCEEEeeCCCCCCCCHHH---HhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEcc------CCc-CCCCCHH
Confidence 57899999988887655432 34899999999999987543 45568999999999999 888 777765
Q ss_pred ccccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccc--cccccccCCCcCcEEecCCCcc
Q 036753 476 NIEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLR--ELPRGIGKLRKLMYLHNEDTGC 541 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~ 541 (725)
.++++.+|++|++++|. ++.+|. .++++++|++|++++|. +. .+|..++.+++|++|++++|..
T Consensus 119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc
Confidence 57999999999999998 888875 58999999999999998 44 4677889999999999998843
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=192.71 Aligned_cols=249 Identities=18% Similarity=0.120 Sum_probs=189.3
Q ss_pred CCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccch
Q 036753 420 VTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPE 499 (725)
Q Consensus 420 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~ 499 (725)
+..+++|++|.+.++.+.. +|..+..+ +|+.|+++ +|. +..+|. ..+++|++|++++|......|.
T Consensus 278 ~~~l~~L~~L~l~~~~l~~----l~~~~~~~-~L~~L~l~------~n~-~~~l~~--~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIER----VKDFSYNF-GWQHLELV------NCK-FGQFPT--LKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp TGGGTTCSEEEEESCEECS----CCBCCSCC-CCSEEEEE------SCB-CSSCCB--CBCSSCCEEEEESCBSCCBCCC
T ss_pred hcCcCcccEEEecCccchh----hhhhhccC-CccEEeec------cCc-ccccCc--ccccccCEEeCcCCcccccccc
Confidence 3478899999999887542 56667777 99999998 887 667776 5788999999999983333433
Q ss_pred hhhcCCCCcEeecCCCcccccc---cccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCcccc
Q 036753 500 TLCELYNLECLNVDDCQNLREL---PRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSL 576 (725)
Q Consensus 500 ~i~~L~~L~~L~l~~~~~l~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L 576 (725)
..+++|++|++++|. +... |..+..+++|++|++++| .+..+|..+..+++|++|++.++.... ......+
T Consensus 344 --~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~ 417 (570)
T 2z63_A 344 --VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVF 417 (570)
T ss_dssp --CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEES--CTTSCTT
T ss_pred --ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCcccc--ccchhhh
Confidence 789999999999987 5544 677889999999999998 455666668889999999887655443 1112346
Q ss_pred ccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEE
Q 036753 577 KKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGI 656 (725)
Q Consensus 577 ~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 656 (725)
..+++|+.|++..+.. .......+.++++|+.|+|++|.+. ...++..+..+++|+.|+|
T Consensus 418 ~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~----------------~~~~p~~~~~l~~L~~L~l 477 (570)
T 2z63_A 418 LSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQ----------------ENFLPDIFTELRNLTFLDL 477 (570)
T ss_dssp TTCTTCCEEECTTSCC----EECCTTTTTTCTTCCEEECTTCEEG----------------GGEECSCCTTCTTCCEEEC
T ss_pred hcCCCCCEEeCcCCcc----cccchhhhhcCCcCcEEECcCCcCc----------------cccchhhhhcccCCCEEEC
Confidence 6788888888876532 1223345678899999999988731 1223467788999999999
Q ss_pred eeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeecccccCc
Q 036753 657 DEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQSV 711 (725)
Q Consensus 657 ~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~~l 711 (725)
++|.+.. +.|.++..+++|++|+|++|. +..+|+ +..+++|+.|++++|+--
T Consensus 478 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 478 SQCQLEQ--LSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTSCCCE--ECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcccc--CChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence 9998877 558889999999999999994 555554 889999999999998733
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=9.4e-18 Score=171.68 Aligned_cols=220 Identities=19% Similarity=0.139 Sum_probs=150.7
Q ss_pred cEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-cccccCccccEEEeecCCCcccc-chhhhcC
Q 036753 427 RSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-TNIEKLLHLKYLNLKGQKKIENL-PETLCEL 504 (725)
Q Consensus 427 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L 504 (725)
+++...++.+.. +|. .-.++|++|+++ ++. +..+| ..+..+++|++|++++|. +..+ |..+.++
T Consensus 14 ~~~~c~~~~l~~----ip~--~~~~~l~~L~l~------~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l 79 (285)
T 1ozn_A 14 VTTSCPQQGLQA----VPV--GIPAASQRIFLH------GNR-ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGL 79 (285)
T ss_dssp CEEECCSSCCSS----CCT--TCCTTCSEEECT------TSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred eEEEcCcCCccc----CCc--CCCCCceEEEee------CCc-CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCc
Confidence 567777766533 343 234689999999 888 66665 568999999999999998 6666 7789999
Q ss_pred CCCcEeecCCCcccccc-cccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCC
Q 036753 505 YNLECLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQ 583 (725)
Q Consensus 505 ~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~ 583 (725)
++|++|++++|..+..+ |..+..+++|++|++++|......|..+..+++|++|++.++......+ ..+..+++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~ 156 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRDLGNLT 156 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH---hHhccCCCcc
Confidence 99999999999756666 6678999999999999995544445668888999998887665443111 2245566666
Q ss_pred ceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCC
Q 036753 584 QCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRR 663 (725)
Q Consensus 584 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 663 (725)
.|++.+..- . ......+..+++|+.|+|++|.+++. .+..+..+++|+.|++++|.+..
T Consensus 157 ~L~l~~n~l-~---~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 157 HLFLHGNRI-S---SVPERAFRGLHSLDRLLLHQNRVAHV-----------------HPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp EEECCSSCC-C---EECTTTTTTCTTCCEEECCSSCCCEE-----------------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred EEECCCCcc-c---ccCHHHhcCccccCEEECCCCccccc-----------------CHhHccCcccccEeeCCCCcCCc
Confidence 666655321 1 11112355667777777777663221 12345556777777777776665
Q ss_pred CCcccccccCccccceeEEcCCC
Q 036753 664 NVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 664 ~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
+++.++..+++|+.|+|++|+
T Consensus 216 --~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 216 --LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp --CCHHHHTTCTTCCEEECCSSC
T ss_pred --CCHHHcccCcccCEEeccCCC
Confidence 535556677777777777765
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=8.1e-18 Score=172.18 Aligned_cols=264 Identities=19% Similarity=0.159 Sum_probs=183.7
Q ss_pred EEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cccccc
Q 036753 401 HLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEK 479 (725)
Q Consensus 401 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 479 (725)
.+.........+|.. -.++|+.|.+.++.+... .+..|..+++|++|+++ +|. +..+ |..++.
T Consensus 15 ~~~c~~~~l~~ip~~------~~~~l~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~------~n~-l~~~~~~~~~~ 78 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG------IPAASQRIFLHGNRISHV---PAASFRACRNLTILWLH------SNV-LARIDAAAFTG 78 (285)
T ss_dssp EEECCSSCCSSCCTT------CCTTCSEEECTTSCCCEE---CTTTTTTCTTCCEEECC------SSC-CCEECTTTTTT
T ss_pred EEEcCcCCcccCCcC------CCCCceEEEeeCCcCCcc---CHHHcccCCCCCEEECC------CCc-cceeCHhhcCC
Confidence 344444455544443 246899999999987543 44568999999999999 888 5555 778999
Q ss_pred CccccEEEeecCCCcccc-chhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCc-ccCCCccCcc
Q 036753 480 LLHLKYLNLKGQKKIENL-PETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRR 557 (725)
Q Consensus 480 l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~ 557 (725)
+++|++|++++|..+..+ |..+.++++|++|++++|......|..+.++++|++|++++|. +..+|. .++.+++|++
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTH 157 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccE
Confidence 999999999999756666 6789999999999999998444446678999999999999994 455554 4889999999
Q ss_pred cCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchh
Q 036753 558 VREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDE 637 (725)
Q Consensus 558 L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 637 (725)
|++.++..... ....+..+++|+.|++.+... .......+..+++|+.|+|++|.+++..
T Consensus 158 L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------- 217 (285)
T 1ozn_A 158 LFLHGNRISSV---PERAFRGLHSLDRLLLHQNRV----AHVHPHAFRDLGRLMTLYLFANNLSALP------------- 217 (285)
T ss_dssp EECCSSCCCEE---CTTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCSCCC-------------
T ss_pred EECCCCccccc---CHHHhcCccccCEEECCCCcc----cccCHhHccCcccccEeeCCCCcCCcCC-------------
Confidence 99887655431 112356778888888876432 1222455778899999999999854322
Q ss_pred HHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CC--Cccccceeecccc
Q 036753 638 DERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LG--KLKSLESLLIYGM 708 (725)
Q Consensus 638 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~--~lp~L~~L~L~~~ 708 (725)
...+..+++|+.|+|++|.+..+.- ..|+ ...|+.+....+......|. +. .+..|+..++.+|
T Consensus 218 ----~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~--~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 218 ----TEALAPLRALQYLRLNDNPWVCDCR-ARPL--WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp ----HHHHTTCTTCCEEECCSSCEECSGG-GHHH--HHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred ----HHHcccCcccCEEeccCCCccCCCC-cHHH--HHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 2356778999999999998765211 2222 23344444444432223443 22 2455666666665
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.6e-17 Score=171.73 Aligned_cols=190 Identities=22% Similarity=0.264 Sum_probs=99.8
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+++|+.|.+.++.+.. ++ .+..+++|++|+|+ +|. +..++. +..+++|++|++++|. +..+| .+
T Consensus 39 ~l~~L~~L~l~~~~i~~----l~-~~~~l~~L~~L~L~------~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT----IE-GVQYLNNLIGLELK------DNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECC------SSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HcCCcCEEEeeCCCccC----ch-hhhccCCCCEEEcc------CCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hh
Confidence 45555555555554332 22 24555555555555 554 444444 5555555555555555 55544 35
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
.++++|++|++++|. +..+|. +..+++|++|++++| .+..++. +..+++
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~----------------------------l~~l~~ 152 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP----------------------------LAGLTN 152 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG----------------------------GGGCTT
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc----------------------------ccCCCC
Confidence 555555555555555 444443 555555555555555 2222222 333344
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRG 661 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 661 (725)
|+.|++....- .. . ..+..+++|+.|++++|.+++.. .+..+++|++|++++|.+
T Consensus 153 L~~L~l~~n~l-~~----~-~~l~~l~~L~~L~l~~n~l~~~~-------------------~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 153 LQYLSIGNAQV-SD----L-TPLANLSKLTTLKADDNKISDIS-------------------PLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CCEEECCSSCC-CC----C-GGGTTCTTCCEEECCSSCCCCCG-------------------GGGGCTTCCEEECTTSCC
T ss_pred ccEEEccCCcC-CC----C-hhhcCCCCCCEEECCCCccCcCh-------------------hhcCCCCCCEEEccCCcc
Confidence 44444433211 11 0 11455667777777777642211 145567777777777777
Q ss_pred CCCCcccccccCccccceeEEcCCC
Q 036753 662 RRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 662 ~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
.. + + .+..+++|+.|+|++|+
T Consensus 208 ~~--~-~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 208 SD--V-S-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CB--C-G-GGTTCTTCCEEEEEEEE
T ss_pred Cc--c-c-cccCCCCCCEEEccCCe
Confidence 66 5 3 26677777777777774
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=7.5e-18 Score=175.13 Aligned_cols=222 Identities=18% Similarity=0.101 Sum_probs=170.6
Q ss_pred hhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccc
Q 036753 443 LPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLREL 521 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l 521 (725)
++..+..+++|++|+|+ +|. +..+ |..++.+++|++|++++|. +..+++ +.++++|++|++++|. +..+
T Consensus 26 ~~~~~~~~~~L~~L~L~------~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 26 LASLRQSAWNVKELDLS------GNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp HHHHHTTGGGCSEEECT------TSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEE
T ss_pred HHHHhccCCCCCEEECc------CCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-cccc
Confidence 44556778899999999 888 6555 4679999999999999999 776665 9999999999999998 7766
Q ss_pred cccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhh
Q 036753 522 PRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAAR 601 (725)
Q Consensus 522 p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~ 601 (725)
|. .++|++|++++|. +..++.. .+++|++|++.++......+ ..+..+++|+.|++...... ....
T Consensus 96 ~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~----~~~~ 161 (317)
T 3o53_A 96 LV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEID----TVNF 161 (317)
T ss_dssp EE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSCCC----EEEG
T ss_pred cC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCCCC----cccH
Confidence 63 4899999999994 4445432 36789999887776554222 24456777888888764321 1112
Q ss_pred hcc-ccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCcccccee
Q 036753 602 AEL-EKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDL 680 (725)
Q Consensus 602 ~~l-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L 680 (725)
..+ ..+++|+.|+|++|.++.. .....+++|+.|+|++|.+.. + |..+..+++|+.|
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-------------------~~~~~l~~L~~L~Ls~N~l~~--l-~~~~~~l~~L~~L 219 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLSSNKLAF--M-GPEFQSAAGVTWI 219 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECCSSCCCE--E-CGGGGGGTTCSEE
T ss_pred HHHhhccCcCCEEECCCCcCccc-------------------ccccccccCCEEECCCCcCCc--c-hhhhcccCcccEE
Confidence 223 4678999999999985221 223358999999999999988 7 6668899999999
Q ss_pred EEcCCCCCCcCCC-CCCccccceeecccccCc
Q 036753 681 SLFWWSNCEHLPP-LGKLKSLESLLIYGMQSV 711 (725)
Q Consensus 681 ~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l 711 (725)
+|++| .+..+|. +..+++|+.|++++|+-.
T Consensus 220 ~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 220 SLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 99999 5667777 889999999999999843
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.7e-17 Score=182.67 Aligned_cols=222 Identities=18% Similarity=0.118 Sum_probs=170.7
Q ss_pred hhHHhhcCC----cceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcc
Q 036753 443 LPQLFEKLT----CLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQN 517 (725)
Q Consensus 443 ~~~~~~~l~----~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~ 517 (725)
+|..+..+. +|++|+|+ +|. +..+ |..++.+++|++|+|++|. +...++ ++++++|++|++++|.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls------~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~- 91 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLS------GNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY- 91 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECC------SSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-
T ss_pred hHHHHHHhcccCCCccEEEee------CCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-
Confidence 555555444 89999999 888 5555 5789999999999999999 776665 9999999999999998
Q ss_pred cccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChh
Q 036753 518 LRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAG 597 (725)
Q Consensus 518 l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~ 597 (725)
+..+|. .++|++|++++|. +..+|. ..+++|++|++.++......+. .+..+++|+.|++++....
T Consensus 92 l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~---- 157 (487)
T 3oja_A 92 VQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEID---- 157 (487)
T ss_dssp EEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCC----
T ss_pred CCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCC----
Confidence 777764 3899999999994 444444 2467899998887766542222 3456777888888764321
Q ss_pred hhhhhccc-cccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccc
Q 036753 598 EAARAELE-KKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTN 676 (725)
Q Consensus 598 ~~~~~~l~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~ 676 (725)
...+..+. .+++|+.|+|++|.+++. .....+++|+.|+|++|.+.. + |..+..+++
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~-------------------~~~~~l~~L~~L~Ls~N~l~~--~-~~~~~~l~~ 215 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLSSNKLAF--M-GPEFQSAAG 215 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECCSSCCCE--E-CGGGGGGTT
T ss_pred CcChHHHhhhCCcccEEecCCCccccc-------------------cccccCCCCCEEECCCCCCCC--C-CHhHcCCCC
Confidence 22233343 679999999999985322 233458999999999999988 7 556889999
Q ss_pred cceeEEcCCCCCCcCCC-CCCccccceeecccccCc
Q 036753 677 LRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQSV 711 (725)
Q Consensus 677 L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~l 711 (725)
|+.|+|++| .+..+|. ++.+++|+.|++++|+-.
T Consensus 216 L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 216 VTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 999999999 5666777 889999999999999843
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2.3e-16 Score=177.37 Aligned_cols=235 Identities=22% Similarity=0.122 Sum_probs=139.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.+++.|.+..+.+..++. .+++|++|++++|.+.. +|. .+++|++|+|+ +|. +..+|.
T Consensus 61 ~~L~~L~L~~N~l~~lp~-------~l~~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls------~N~-l~~l~~- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-------LPPELRTLEVSGNQLTS----LPV---LPPGLLELSIF------SNP-LTHLPA- 118 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-------CCTTCCEEEECSCCCSC----CCC---CCTTCCEEEEC------SCC-CCCCCC-
T ss_pred CCCcEEEecCCCCCCCCC-------cCCCCCEEEcCCCcCCc----CCC---CCCCCCEEECc------CCc-CCCCCC-
Confidence 355556655555443332 34556666666665432 222 45556666665 555 555554
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
.+.+|++|++++|. ++.+|.. +++|++|++++|. +..+|.. +++|+.|++++| .+..+| ..+++|+
T Consensus 119 --~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~ 184 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNN-QLTSLP---MLPSGLQ 184 (622)
T ss_dssp --CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCC
T ss_pred --CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCC-CCCCCc---ccCCCCc
Confidence 34556666666665 5555543 3566666666665 5555532 345566666655 344455 2345666
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCch
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEED 636 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 636 (725)
.|++.++.... .+. .+++|+.|.+.+.... . +. ..+++|+.|+|++|.+++.
T Consensus 185 ~L~Ls~N~l~~-l~~------~~~~L~~L~L~~N~l~-~----l~---~~~~~L~~L~Ls~N~L~~l------------- 236 (622)
T 3g06_A 185 ELSVSDNQLAS-LPT------LPSELYKLWAYNNRLT-S----LP---ALPSGLKELIVSGNRLTSL------------- 236 (622)
T ss_dssp EEECCSSCCSC-CCC------CCTTCCEEECCSSCCS-S----CC---CCCTTCCEEECCSSCCSCC-------------
T ss_pred EEECCCCCCCC-CCC------ccchhhEEECcCCccc-c----cC---CCCCCCCEEEccCCccCcC-------------
Confidence 66665544332 111 2345555555543211 1 01 1236788888888774221
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccccceeecccccC
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKSLESLLIYGMQS 710 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~L~~L~L~~~~~ 710 (725)
+ ..+++|+.|+|++|.+.. + |. .+++|+.|+|++| .+..+|. ++.+++|+.|+|++|+-
T Consensus 237 -----p---~~l~~L~~L~Ls~N~L~~--l-p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 237 -----P---VLPSELKELMVSGNRLTS--L-PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -----C---CCCTTCCEEECCSSCCSC--C-CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred -----C---CCCCcCcEEECCCCCCCc--C-Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 1 346889999999998887 7 55 6789999999999 5668887 88999999999999873
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=4e-17 Score=186.85 Aligned_cols=129 Identities=23% Similarity=0.223 Sum_probs=108.0
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-ccccCccccEEEeecCCCccccch-hh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPE-TL 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~-~i 501 (725)
++++.|++++|.++.+ .+..|.++++|++|+|+ +|. +..+|. .+++|++|++|+|++|+ ++.+|. .+
T Consensus 52 ~~~~~LdLs~N~i~~l---~~~~f~~l~~L~~L~Ls------~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLS------RCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 120 (635)
T ss_dssp TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECT------TCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGG
T ss_pred cCCCEEEeeCCCCCCC---CHHHHhCCCCCCEEECC------CCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHh
Confidence 4799999999987644 45679999999999999 888 777754 68999999999999999 888885 57
Q ss_pred hcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccc-cCCcccCCCccCcccCeEEEc
Q 036753 502 CELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLR-YLPAGIGELIRLRRVREFVVG 564 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~~~~~~ 564 (725)
.+|++|++|++++|. +..+|.. ++++++|++|++++|.... .+|..++.+++|++|++.++.
T Consensus 121 ~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 121 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999999999999998 7777764 8999999999999995322 356778888889888776543
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=2.6e-16 Score=160.96 Aligned_cols=197 Identities=19% Similarity=0.097 Sum_probs=133.8
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPET 500 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~ 500 (725)
++++++.+.+.++.+.. +|..+. +.+++|+|+ +|. +..+ |..+..+++|++|++++|. ++.+|..
T Consensus 8 ~l~~l~~l~~~~~~l~~----ip~~~~--~~l~~L~L~------~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA----LPPDLP--KDTTILHLS------ENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD 73 (290)
T ss_dssp CSTTCCEEECTTSCCSS----CCSCCC--TTCCEEECT------TSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC
T ss_pred ccCCccEEECCCCCCCc----CCCCCC--CCCCEEEcC------CCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC
Confidence 67778888888776543 333232 577888888 777 4444 5567888888888888887 7777764
Q ss_pred hhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCC-cccCCCccCcccCeEEEcCcCCCccCccccccC
Q 036753 501 LCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVREFVVGGGYDRACSLGSLKKL 579 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L 579 (725)
+.+++|++|++++|. +..+|..+..+++|++|++++| .+..+| ..+..+++|++|++.++....
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~------------ 138 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT------------ 138 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC------------
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc------------
Confidence 778888888888887 7778877788888888888877 344444 346666666666543322111
Q ss_pred CCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeee
Q 036753 580 NFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEY 659 (725)
Q Consensus 580 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 659 (725)
++ ...+..+++|+.|+|+.|.++... ...+..+++|+.|+|++|
T Consensus 139 -------------~~------~~~~~~l~~L~~L~L~~N~l~~l~-----------------~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 139 -------------LP------PGLLTPTPKLEKLSLANNNLTELP-----------------AGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp -------------CC------TTTTTTCTTCCEEECTTSCCSCCC-----------------TTTTTTCTTCCEEECCSS
T ss_pred -------------cC------hhhcccccCCCEEECCCCcCCccC-----------------HHHhcCcCCCCEEECCCC
Confidence 00 122445678888888888753221 123456788888888888
Q ss_pred cCCCCCcccccccCccccceeEEcCCC
Q 036753 660 RGRRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 660 ~~~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
.+.. + |.++..+++|+.|+|.+|+
T Consensus 183 ~l~~--i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 183 SLYT--I-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCC--C-CTTTTTTCCCSEEECCSCC
T ss_pred cCCc--c-ChhhcccccCCeEEeCCCC
Confidence 8877 7 7777777888888888875
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=6.4e-16 Score=173.72 Aligned_cols=244 Identities=21% Similarity=0.151 Sum_probs=188.4
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.+.+..+....+|..++ ++|+.|.+++|.+.. +|. .+++|++|+|+ +|. +..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~------~~L~~L~L~~N~l~~----lp~---~l~~L~~L~Ls------~N~-l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP------AHITTLVIPDNNLTS----LPA---LPPELRTLEVS------GNQ-LTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC------TTCSEEEECSCCCSC----CCC---CCTTCCEEEEC------SCC-CSCCCC-
T ss_pred CCCcEEEecCCCcCccChhhC------CCCcEEEecCCCCCC----CCC---cCCCCCEEEcC------CCc-CCcCCC-
Confidence 467888888888876665442 789999999998753 443 57899999999 888 888887
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
.+++|++|++++|. ++.+|. .+.+|++|++++|. +..+|.. +++|++|++++| .+..+|.. +.+|+
T Consensus 99 --~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELC 164 (622)
T ss_dssp --CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCC
T ss_pred --CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCC
Confidence 68999999999998 899988 67899999999998 8889875 489999999999 56677754 35677
Q ss_pred ccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCch
Q 036753 557 RVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEED 636 (725)
Q Consensus 557 ~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 636 (725)
.|.+.++.... +. ..+++|+.|++....- .. +. ...++|+.|+++.|.++...
T Consensus 165 ~L~L~~N~l~~-----l~--~~~~~L~~L~Ls~N~l-~~----l~---~~~~~L~~L~L~~N~l~~l~------------ 217 (622)
T 3g06_A 165 KLWAYNNQLTS-----LP--MLPSGLQELSVSDNQL-AS----LP---TLPSELYKLWAYNNRLTSLP------------ 217 (622)
T ss_dssp EEECCSSCCSC-----CC--CCCTTCCEEECCSSCC-SC----CC---CCCTTCCEEECCSSCCSSCC------------
T ss_pred EEECCCCCCCC-----Cc--ccCCCCcEEECCCCCC-CC----CC---CccchhhEEECcCCcccccC------------
Confidence 77776655443 11 3457788888776432 11 11 12478999999998743211
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeecccccCceEeCc
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKRVGN 716 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~i~~ 716 (725)
..+++|+.|+|++|.+.. + | ..+++|+.|+|++| .+..+|. .+++|+.|+|++|. +..+|.
T Consensus 218 ---------~~~~~L~~L~Ls~N~L~~--l-p---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~ 278 (622)
T 3g06_A 218 ---------ALPSGLKELIVSGNRLTS--L-P---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LTRLPE 278 (622)
T ss_dssp ---------CCCTTCCEEECCSSCCSC--C-C---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CCSCCG
T ss_pred ---------CCCCCCCEEEccCCccCc--C-C---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CCcCCH
Confidence 124889999999999887 7 6 46799999999999 6778887 68999999999986 889988
Q ss_pred cccCC
Q 036753 717 ELSEV 721 (725)
Q Consensus 717 ~~~~~ 721 (725)
.+...
T Consensus 279 ~l~~l 283 (622)
T 3g06_A 279 SLIHL 283 (622)
T ss_dssp GGGGS
T ss_pred HHhhc
Confidence 76543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=5.7e-16 Score=156.94 Aligned_cols=196 Identities=27% Similarity=0.340 Sum_probs=126.4
Q ss_pred cccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-ccccCccccEEEeecCCCccccchhh-h
Q 036753 425 GLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPETL-C 502 (725)
Q Consensus 425 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~~i-~ 502 (725)
+.+++.+.++.+.. +|..+. +.|+.|+|+ ++. +..+|. .++++++|++|++++|. ++.+|..+ .
T Consensus 17 ~~~~l~~~~~~l~~----ip~~~~--~~l~~L~l~------~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA----IPSNIP--ADTKKLDLQ------SNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSCCSS----CCSCCC--TTCSEEECC------SSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred CCCEEEccCCCCCc----cCCCCC--CCCCEEECc------CCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence 46777777776543 333222 567888887 777 556553 57788888888888887 77777654 6
Q ss_pred cCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCC-cccCCCccCcccCeEEEcCcCCCccCccccccCC
Q 036753 503 ELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVREFVVGGGYDRACSLGSLKKLN 580 (725)
Q Consensus 503 ~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~ 580 (725)
++++|++|++++|. +..+|.. +..+++|++|++++|. +..+| ..++.+++|++|++.++....
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------- 147 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS------------- 147 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------------
T ss_pred CCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc-------------
Confidence 78888888888877 5566543 5777888888888773 33333 335556666655543321110
Q ss_pred CCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeec
Q 036753 581 FLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYR 660 (725)
Q Consensus 581 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 660 (725)
++ ...+..+++|+.|+|++|.+.... ...+..+++|++|+|++|.
T Consensus 148 ------------~~------~~~~~~l~~L~~L~L~~n~l~~~~-----------------~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 148 ------------LP------KGVFDKLTSLKELRLYNNQLKRVP-----------------EGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp ------------CC------TTTTTTCTTCCEEECCSSCCSCCC-----------------TTTTTTCTTCCEEECCSSC
T ss_pred ------------cC------HhHccCCcccceeEecCCcCcEeC-----------------hhHhccCCCcCEEECCCCc
Confidence 00 122455677888888877643222 1245567788888888887
Q ss_pred CCCCCcccccccCccccceeEEcCCC
Q 036753 661 GRRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 661 ~~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
+.. +++..+..+++|+.|+|++|+
T Consensus 193 l~~--~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 LKR--VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CCc--CCHHHhccccCCCEEEecCCC
Confidence 776 645567778888888888875
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=8.1e-18 Score=176.60 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=60.9
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccc-cccccccCccccEEEeecCCCccccchhhh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKE-IPTNIEKLLHLKYLNLKGQKKIENLPETLC 502 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~-lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~ 502 (725)
++++.|.+.++.+... .+. +..+++|++|+++ +|.+... +|..+..+++|++|++++|......|..++
T Consensus 70 ~~l~~L~l~~n~l~~~---~~~-~~~~~~L~~L~L~------~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP---LAE-HFSPFRVQHMDLS------NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139 (336)
T ss_dssp TTCSEEECTTCEECSC---CCS-CCCCBCCCEEECT------TCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred ccceEEEcCCcccccc---chh-hccCCCCCEEEcc------CCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh
Confidence 4555555555543221 122 3345555555555 4441112 444455555555555555552224445555
Q ss_pred cCCCCcEeecCCCcccc--cccccccCCCcCcEEecCCCccccc--CCcccCCCc-cCcccCeEEE
Q 036753 503 ELYNLECLNVDDCQNLR--ELPRGIGKLRKLMYLHNEDTGCLRY--LPAGIGELI-RLRRVREFVV 563 (725)
Q Consensus 503 ~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~i~~l~-~L~~L~~~~~ 563 (725)
++++|++|++++|..+. .+|..+.++++|++|++++|..+.. ++..+..++ +|++|++.++
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 55555555555553233 2444455555555555555522221 233344444 5555544433
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=3.3e-18 Score=177.42 Aligned_cols=199 Identities=20% Similarity=0.185 Sum_probs=146.9
Q ss_pred CcccccEEEeccCCccccccchhHHh--hcCCcceEEEeccccCCCccccccccccccccC-----ccccEEEeecCCCc
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLF--EKLTCLRALELQVRESWPRNSLIKEIPTNIEKL-----LHLKYLNLKGQKKI 494 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l-----~~Lr~L~L~~~~~i 494 (725)
++++|+.|.+++|.+... .|..+ ..+++|++|+|+ +|. +..+|..++.+ ++|++|++++|. +
T Consensus 93 ~l~~L~~L~L~~n~l~~~---~~~~~~~~~l~~L~~L~Ls------~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l 161 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGT---APPPLLEATGPDLNILNLR------NVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-S 161 (312)
T ss_dssp TTSCCCEEEEEEEBCBSC---CCCCSSSCCSCCCSEEEEE------SCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-C
T ss_pred CcCCccEEEccCCcccch---hHHHHHHhcCCCccEEEcc------CCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-C
Confidence 588999999999986532 45444 889999999999 888 66668888887 899999999999 6
Q ss_pred cccc-hhhhcCCCCcEeecCCCccccc--ccccc--cCCCcCcEEecCCCcccccCC---cc-cCCCccCcccCeEEEcC
Q 036753 495 ENLP-ETLCELYNLECLNVDDCQNLRE--LPRGI--GKLRKLMYLHNEDTGCLRYLP---AG-IGELIRLRRVREFVVGG 565 (725)
Q Consensus 495 ~~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~~i--~~L~~L~~L~l~~~~~~~~lp---~~-i~~l~~L~~L~~~~~~~ 565 (725)
..+| ..++++++|++|++++|..... +|..+ ..+++|++|++++|. +..++ .. +..+++|++|++.++..
T Consensus 162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 7666 7899999999999999985443 45555 899999999999994 34222 22 23556666666543332
Q ss_pred cCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhc
Q 036753 566 GYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEAL 645 (725)
Q Consensus 566 ~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 645 (725)
.... ....+..+++|+.|+|++|.++. ++..+
T Consensus 241 ~~~~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~------------------ip~~~ 272 (312)
T 1wwl_A 241 RDAA------------------------------GAPSCDWPSQLNSLNLSFTGLKQ------------------VPKGL 272 (312)
T ss_dssp CSSC------------------------------CCSCCCCCTTCCEEECTTSCCSS------------------CCSSC
T ss_pred Cccc------------------------------chhhhhhcCCCCEEECCCCccCh------------------hhhhc
Confidence 2100 00123345788888888887531 22233
Q ss_pred CCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC
Q 036753 646 GPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 646 ~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
. ++|++|+|++|.+.. + |. +..+++|++|+|++|+
T Consensus 273 ~--~~L~~L~Ls~N~l~~--~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDR--N-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp C--SEEEEEECCSSCCCS--C-CC-TTTSCEEEEEECTTCT
T ss_pred c--CCceEEECCCCCCCC--C-hh-HhhCCCCCEEeccCCC
Confidence 2 789999999999888 7 76 7899999999999985
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=1e-15 Score=166.88 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCC--cCCC-CCCc-------------cccceeecccccCc
Q 036753 648 PPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCE--HLPP-LGKL-------------KSLESLLIYGMQSV 711 (725)
Q Consensus 648 ~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~--~lp~-l~~l-------------p~L~~L~L~~~~~l 711 (725)
+++|+.|++++|.+.. + |. .+++|++|++++|...+ .+|. ++.+ ++|+.|++++|+--
T Consensus 336 ~~~L~~L~L~~N~l~~--l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 336 PPRLERLIASFNHLAE--V-PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CTTCCEEECCSSCCSC--C-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCcCCEEECCCCcccc--c-cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 4677888887777766 6 54 36788888888875444 4554 6656 77888888877632
Q ss_pred e--EeCccc
Q 036753 712 K--RVGNEL 718 (725)
Q Consensus 712 ~--~i~~~~ 718 (725)
. .+|..+
T Consensus 410 ~~~~iP~sl 418 (454)
T 1jl5_A 410 EFPDIPESV 418 (454)
T ss_dssp ---------
T ss_pred ccccchhhH
Confidence 2 566544
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=9.1e-16 Score=158.85 Aligned_cols=232 Identities=15% Similarity=0.057 Sum_probs=157.5
Q ss_pred CcccccEEEeccCCccccc-cchhHHhhcCCcceEEEeccccCCCcccccccccccc--ccCccccEEEeecCCCccc-c
Q 036753 422 GLRGLRSLLVKSDEYSWSS-EGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNI--EKLLHLKYLNLKGQKKIEN-L 497 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i--~~l~~Lr~L~L~~~~~i~~-l 497 (725)
....++.+.+.+..+.... ..+.. +..+++|++|+++ +|.+....|..+ +.+++|++|++++|. +.. .
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLE------DLKITGTMPPLPLEATGLALSSLRLRNVS-WATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEE------SCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEee------CCEeccchhhhhhhccCCCCCEEEeeccc-ccchh
Confidence 3445677777776643210 00112 3345679999999 888555677777 889999999999998 553 3
Q ss_pred c----hhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCccccc--CC--cccCCCccCcccCeEEEcCcCCC
Q 036753 498 P----ETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRY--LP--AGIGELIRLRRVREFVVGGGYDR 569 (725)
Q Consensus 498 p----~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~--lp--~~i~~l~~L~~L~~~~~~~~~~~ 569 (725)
| ..+..+++|++|++++|......|..++.+++|++|++++|..... ++ ..++.+++|++|++.++...
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--- 210 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--- 210 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---
Confidence 3 3456799999999999984444456788999999999999853321 22 22355666666665433211
Q ss_pred ccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCC
Q 036753 570 ACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPP 649 (725)
Q Consensus 570 ~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 649 (725)
.........+..+++|+.|+|++|.+++..+. ....+..++
T Consensus 211 -------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~--------------~~~~~~~~~ 251 (310)
T 4glp_A 211 -------------------------TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP--------------SAPRCMWSS 251 (310)
T ss_dssp -------------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS--------------CCSSCCCCT
T ss_pred -------------------------chHHHHHHHHhcCCCCCEEECCCCCCCccchh--------------hHHhccCcC
Confidence 11111111235678899999998886544221 011233347
Q ss_pred CCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeeccccc
Q 036753 650 NLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQ 709 (725)
Q Consensus 650 ~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~ 709 (725)
+|++|+|++|.+.. + |.++. ++|+.|+|++| .+..+|.+..+|+|+.|+|++|+
T Consensus 252 ~L~~L~Ls~N~l~~--l-p~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 252 ALNSLNLSFAGLEQ--V-PKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp TCCCEECCSSCCCS--C-CSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred cCCEEECCCCCCCc--h-hhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 99999999999987 8 76663 89999999999 57777888899999999999987
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=7.9e-16 Score=156.08 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=34.9
Q ss_pred cCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeecccccCceEeCccc
Q 036753 645 LGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKRVGNEL 718 (725)
Q Consensus 645 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~i~~~~ 718 (725)
+..+++|+.|++++|.+.. ++|.++..+++|+.|+|++|+. .+.+|+|+.|++..+..-..+|..+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred hcCCccCCEEECCCCcCCc--cCHHHHhCCcCCCEEEccCCCc------cccCcHHHHHHHHHHhCCCcccCcc
Confidence 3445566666666665555 4344455666666666666632 2334455555555554444444443
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=3.7e-16 Score=170.33 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=40.0
Q ss_pred cCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeecccccCceEeC
Q 036753 645 LGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYGMQSVKRVG 715 (725)
Q Consensus 645 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~~~~l~~i~ 715 (725)
+..+++|+.|++++|.+.. + |.. +++|+.|++++|. +..+|.. +++|+.|++++|. +..+|
T Consensus 233 ~~~l~~L~~L~l~~N~l~~--l-~~~---~~~L~~L~l~~N~-l~~l~~~--~~~L~~L~ls~N~-l~~l~ 293 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKT--L-PDL---PPSLEALNVRDNY-LTDLPEL--PQSLTFLDVSENI-FSGLS 293 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS--C-CSC---CTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-CSEES
T ss_pred cCCCCCCCEEECCCCcCCc--c-ccc---ccccCEEECCCCc-ccccCcc--cCcCCEEECcCCc-cCccc
Confidence 5567778888887777766 5 542 3677777777773 4455543 3677777777765 55443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.3e-16 Score=154.78 Aligned_cols=200 Identities=14% Similarity=0.162 Sum_probs=112.0
Q ss_pred cceEEEeccccCCCcccccccccc-ccccCccccEEEeecCCCccccch-hhhcCCCCcEeecCC-Ccccccccc-cccC
Q 036753 452 CLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDD-CQNLRELPR-GIGK 527 (725)
Q Consensus 452 ~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~-~~~l~~lp~-~i~~ 527 (725)
+|++|+++ ++. +..+|. .++.+++|++|++++|..++.+|. .+.++++|++|++++ |. +..+|. .+..
T Consensus 32 ~l~~L~l~------~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLI------ETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEE------SCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEEC
T ss_pred cccEEEEe------CCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCC
Confidence 45555555 444 444433 345555555555555532444443 345555555555554 33 444432 3445
Q ss_pred CCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccc
Q 036753 528 LRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKK 607 (725)
Q Consensus 528 L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 607 (725)
+++|++|++++| .+..+|. ++.+++|+ .|+.|++.....+.. .....+.++
T Consensus 104 l~~L~~L~l~~n-~l~~lp~-~~~l~~L~------------------------~L~~L~l~~N~~l~~---i~~~~~~~l 154 (239)
T 2xwt_C 104 LPLLKFLGIFNT-GLKMFPD-LTKVYSTD------------------------IFFILEITDNPYMTS---IPVNAFQGL 154 (239)
T ss_dssp CTTCCEEEEEEE-CCCSCCC-CTTCCBCC------------------------SEEEEEEESCTTCCE---ECTTTTTTT
T ss_pred CCCCCEEeCCCC-CCccccc-cccccccc------------------------cccEEECCCCcchhh---cCcccccch
Confidence 555555555544 2233333 33333333 222444443211111 111235667
Q ss_pred cccC-cEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeec-CCCCCcccccccCc-cccceeEEcC
Q 036753 608 KYLL-KLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYR-GRRNVVPKNWFMSL-TNLRDLSLFW 684 (725)
Q Consensus 608 ~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~p~~l~~l-~~L~~L~L~~ 684 (725)
++|+ .|++++|.++... ...+.. ++|+.|++++|. +.. +++..+..+ ++|+.|+|++
T Consensus 155 ~~L~~~L~l~~n~l~~i~-----------------~~~~~~-~~L~~L~L~~n~~l~~--i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQ-----------------GYAFNG-TKLDAVYLNKNKYLTV--IDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp BSSEEEEECCSCCCCEEC-----------------TTTTTT-CEEEEEECTTCTTCCE--ECTTTTTTCSBCCSEEECTT
T ss_pred hcceeEEEcCCCCCcccC-----------------HhhcCC-CCCCEEEcCCCCCccc--CCHHHhhccccCCcEEECCC
Confidence 8888 8988888742111 112333 789999999995 766 656778888 9999999999
Q ss_pred CCCCCcCCCCCCccccceeecccccC
Q 036753 685 WSNCEHLPPLGKLKSLESLLIYGMQS 710 (725)
Q Consensus 685 c~~~~~lp~l~~lp~L~~L~L~~~~~ 710 (725)
| .+..+|.- .+++|+.|++.++..
T Consensus 215 N-~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 215 T-SVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp C-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred C-ccccCChh-HhccCceeeccCccC
Confidence 8 56677764 789999999988764
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=1.9e-17 Score=177.36 Aligned_cols=266 Identities=14% Similarity=0.031 Sum_probs=165.0
Q ss_pred CCcccccEEEeccCCccccc-cchhHHhhcCCcceEEEeccccCCCccc---ccccccccc-------ccCccccEEEee
Q 036753 421 TGLRGLRSLLVKSDEYSWSS-EGLPQLFEKLTCLRALELQVRESWPRNS---LIKEIPTNI-------EKLLHLKYLNLK 489 (725)
Q Consensus 421 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~---~~~~lp~~i-------~~l~~Lr~L~L~ 489 (725)
..+++|+.|.+++|.+.... ..++..+..+++|++|+|+ +|. +...+|..+ ..+++|++|+|+
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls------~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS------DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC------SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCc------ccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 37888999999998764321 1133446788999999998 653 112344444 688999999999
Q ss_pred cCCCccc-----cchhhhcCCCCcEeecCCCcccc----cccccccCC---------CcCcEEecCCCccc-ccCC---c
Q 036753 490 GQKKIEN-----LPETLCELYNLECLNVDDCQNLR----ELPRGIGKL---------RKLMYLHNEDTGCL-RYLP---A 547 (725)
Q Consensus 490 ~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~~-~~lp---~ 547 (725)
+|. +.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|... ..+| .
T Consensus 103 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 998 654 78888999999999999998322 234444455 89999999988533 2333 3
Q ss_pred ccCCCccCcccCeEEEcCcCC-CccCcc-ccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCc
Q 036753 548 GIGELIRLRRVREFVVGGGYD-RACSLG-SLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDE 625 (725)
Q Consensus 548 ~i~~l~~L~~L~~~~~~~~~~-~~~~~~-~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~ 625 (725)
.+..+++|++|++.++..... ....+. .+..+++|+.|++..+.........+...+..+++|+.|+|++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~-- 259 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-- 259 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH--
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh--
Confidence 466677888887766544310 000122 4566777777777664321111133445567777888888887764211
Q ss_pred ccccCCCCCchhHHHHhhhc--CCCCCCCcEEEeeecCCCC---Ccccccc-cCccccceeEEcCCCCCCcCC--C--CC
Q 036753 626 EQAGRRENEEDEDERLLEAL--GPPPNLKNLGIDEYRGRRN---VVPKNWF-MSLTNLRDLSLFWWSNCEHLP--P--LG 695 (725)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~L~~~~~~~~---~~~p~~l-~~l~~L~~L~L~~c~~~~~lp--~--l~ 695 (725)
....++..+ .++++|++|+|++|.+... .+ |.++ .++++|++|+|++|......+ . ..
T Consensus 260 -----------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l-~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 260 -----------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL-KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp -----------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH-HHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred -----------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH-HHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 112344555 3477888888888776431 13 4555 457888888888875333322 1 22
Q ss_pred Cccccceeeccc
Q 036753 696 KLKSLESLLIYG 707 (725)
Q Consensus 696 ~lp~L~~L~L~~ 707 (725)
.+|.++.+.+..
T Consensus 328 ~l~~~~~~~l~~ 339 (386)
T 2ca6_A 328 VFSTRGRGELDE 339 (386)
T ss_dssp HHHHHTCCEECC
T ss_pred HhhhcCcchhhh
Confidence 355555555543
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=9e-16 Score=156.08 Aligned_cols=205 Identities=22% Similarity=0.187 Sum_probs=130.2
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-cccccCccccEEEeecCCCccccc-hhh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-TNIEKLLHLKYLNLKGQKKIENLP-ETL 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp-~~i 501 (725)
++|+.|.+++|.+... .+..|.++++|++|+++ +|. +..++ ..+.++++|++|++++|. +..+| ..+
T Consensus 28 ~~l~~L~ls~n~l~~~---~~~~~~~l~~L~~L~l~------~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLS------RCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEE---CTTTTTTCTTCSEEECT------TCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCccccc---CHhHhccccCCcEEECC------CCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 4688888888876433 23357778888888888 776 55554 367788888888888887 55554 567
Q ss_pred hcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcccc-cCCcccCCCccCcccCeEEEcCcCCCccCccccccC
Q 036753 502 CELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLR-YLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKL 579 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L 579 (725)
.++++|++|++++|. +..++. .+.++++|++|++++|.... .+|..++.+++|++|++.++.........+..+.+
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~- 174 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ- 174 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-
Confidence 888888888888887 555544 57788888888888774322 25666777777777766554433211111111111
Q ss_pred CCCCceEEeCcCCCCChhhhhhhccccccccC-cEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEee
Q 036753 580 NFLQQCGIRGLGGVSDAGEAARAELEKKKYLL-KLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDE 658 (725)
Q Consensus 580 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 658 (725)
++.|. .|++++|.++.. ........+|+.|++++
T Consensus 175 ---------------------------L~~l~l~L~ls~n~l~~~------------------~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 175 ---------------------------MPLLNLSLDLSLNPMNFI------------------QPGAFKEIRLKELALDT 209 (276)
T ss_dssp ---------------------------CTTCCEEEECCSSCCCEE------------------CTTSSCSCCEEEEECCS
T ss_pred ---------------------------ccccceeeecCCCccccc------------------CccccCCCcccEEECCC
Confidence 22222 566666653211 11222334788888888
Q ss_pred ecCCCCCcccccccCccccceeEEcCCCCC
Q 036753 659 YRGRRNVVPKNWFMSLTNLRDLSLFWWSNC 688 (725)
Q Consensus 659 ~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~ 688 (725)
|.+.. +++..+..+++|+.|+|++|+..
T Consensus 210 n~l~~--~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 210 NQLKS--VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCSC--CCTTTTTTCCSCCEEECCSSCBC
T ss_pred Cceee--cCHhHhcccccccEEEccCCccc
Confidence 88776 64555677888888888888533
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=5.2e-16 Score=157.83 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=137.4
Q ss_pred CcceEEEeccccCCCcccccccccc-ccccCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCccccccc-ccccC
Q 036753 451 TCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELP-RGIGK 527 (725)
Q Consensus 451 ~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~ 527 (725)
++|++|+++ ++. +..++. .+.++++|++|++++|. +..+|. .+.++++|++|++++|. +..+| ..+.+
T Consensus 28 ~~l~~L~ls------~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLS------FNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECT------TCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECC------CCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 468888888 777 666554 67888888888888887 666654 67888888888888887 44444 56788
Q ss_pred CCcCcEEecCCCcccccCCc-ccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhcccc
Q 036753 528 LRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEK 606 (725)
Q Consensus 528 L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 606 (725)
+++|++|++++|.. ..++. .++.+++|++|++.++.... ......+..
T Consensus 99 l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------------~~l~~~~~~ 147 (276)
T 2z62_A 99 LSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS------------------------------FKLPEYFSN 147 (276)
T ss_dssp CTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCC------------------------------CCCCGGGGG
T ss_pred CccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccce------------------------------ecCchhhcc
Confidence 88888888888743 33333 46666666666554332211 001234566
Q ss_pred ccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCC-cEEEeeecCCCCCcccccccCccccceeEEcCC
Q 036753 607 KKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLK-NLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWW 685 (725)
Q Consensus 607 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c 685 (725)
+++|+.|+|++|.+++... ..+..+..++.|. .|++++|.+.. + |.......+|+.|+|++|
T Consensus 148 l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~l~l~L~ls~n~l~~--~-~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYC--------------TDLRVLHQMPLLNLSLDLSLNPMNF--I-QPGAFKEIRLKELALDTN 210 (276)
T ss_dssp CTTCCEEECCSSCCCEECG--------------GGGHHHHTCTTCCEEEECCSSCCCE--E-CTTSSCSCCEEEEECCSS
T ss_pred CCCCCEEECCCCCCCcCCH--------------HHhhhhhhccccceeeecCCCcccc--c-CccccCCCcccEEECCCC
Confidence 7888888888887533221 1122233334444 89999999887 7 444445568999999999
Q ss_pred CCCCcCCC--CCCccccceeeccccc
Q 036753 686 SNCEHLPP--LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 686 ~~~~~lp~--l~~lp~L~~L~L~~~~ 709 (725)
. ++.+|. +..+++|+.|+|++++
T Consensus 211 ~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 Q-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp C-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred c-eeecCHhHhcccccccEEEccCCc
Confidence 5 667766 7889999999999765
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=2.9e-15 Score=154.75 Aligned_cols=144 Identities=24% Similarity=0.313 Sum_probs=119.1
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
.++++|.+..+....++ . +..+++|+.|.+++|.+.. ++. +..+++|++|+|+ +|. +..+| .
T Consensus 41 ~~L~~L~l~~~~i~~l~-~----~~~l~~L~~L~L~~n~i~~----~~~-~~~l~~L~~L~L~------~n~-l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-G----VQYLNNLIGLELKDNQITD----LAP-LKNLTKITELELS------GNP-LKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT-T----GGGCTTCCEEECCSSCCCC----CGG-GTTCCSCCEEECC------SCC-CSCCG-G
T ss_pred CCcCEEEeeCCCccCch-h----hhccCCCCEEEccCCcCCC----Chh-HccCCCCCEEEcc------CCc-CCCch-h
Confidence 57899999888776543 2 3489999999999998654 344 8999999999999 888 77776 5
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
+..+++|++|++++|. +..+|. +.++++|++|++++|. +..+|. +..+++|++|++++| .+..++. +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCC
Confidence 8999999999999999 888886 9999999999999998 777775 899999999999999 4555655 77777777
Q ss_pred ccCeEEEc
Q 036753 557 RVREFVVG 564 (725)
Q Consensus 557 ~L~~~~~~ 564 (725)
+|++.++.
T Consensus 177 ~L~l~~n~ 184 (308)
T 1h6u_A 177 TLKADDNK 184 (308)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 77765443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3.4e-15 Score=152.63 Aligned_cols=198 Identities=18% Similarity=0.121 Sum_probs=146.9
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.+.+..+....+|..+ .++++.|.+++|.+... .+..|..+++|++|+|+ +|. +..+|..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~------~~~l~~L~L~~N~l~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~ 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL------PKDTTILHLSENLLYTF---SLATLMPYTRLTQLNLD------RAE-LTKLQVD 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC------CTTCCEEECTTSCCSEE---EGGGGTTCTTCCEEECT------TSC-CCEEECC
T ss_pred CCccEEECCCCCCCcCCCCC------CCCCCEEEcCCCcCCcc---CHHHhhcCCCCCEEECC------CCc-cCcccCC
Confidence 35666777777666565544 26889999999987543 46678999999999999 888 7777664
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccc-ccccCCCcCcEEecCCCcccccCCcc-cCCCcc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPAG-IGELIR 554 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~ 554 (725)
+.+++|++|++++|. +..+|..+.++++|++|++++|. +..+| ..+..+++|++|++++| .+..+|.. +..+++
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPK 149 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccC
Confidence 789999999999998 88999999999999999999998 66766 45889999999999998 45566654 567777
Q ss_pred CcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCC
Q 036753 555 LRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENE 634 (725)
Q Consensus 555 L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 634 (725)
|+.|++.++.... + + ...+.++++|+.|+|+.|.++.
T Consensus 150 L~~L~L~~N~l~~--------------l-----------~------~~~~~~l~~L~~L~L~~N~l~~------------ 186 (290)
T 1p9a_G 150 LEKLSLANNNLTE--------------L-----------P------AGLLNGLENLDTLLLQENSLYT------------ 186 (290)
T ss_dssp CCEEECTTSCCSC--------------C-----------C------TTTTTTCTTCCEEECCSSCCCC------------
T ss_pred CCEEECCCCcCCc--------------c-----------C------HHHhcCcCCCCEEECCCCcCCc------------
Confidence 7777654332111 0 0 0224457788888898887532
Q ss_pred chhHHHHhhhcCCCCCCCcEEEeeecCCC
Q 036753 635 EDEDERLLEALGPPPNLKNLGIDEYRGRR 663 (725)
Q Consensus 635 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 663 (725)
++..+...++|+.|.|.+|+...
T Consensus 187 ------ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 187 ------IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ------CCTTTTTTCCCSEEECCSCCBCC
T ss_pred ------cChhhcccccCCeEEeCCCCccC
Confidence 23445556789999999988654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=9.5e-17 Score=168.42 Aligned_cols=252 Identities=13% Similarity=0.132 Sum_probs=186.7
Q ss_pred cccEEEeccCCccccccchhHHhhcC--CcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccc--cchh
Q 036753 425 GLRSLLVKSDEYSWSSEGLPQLFEKL--TCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIEN--LPET 500 (725)
Q Consensus 425 ~L~~L~l~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~--lp~~ 500 (725)
.++.++++++.+. +..+..+ +++++|+++ ++. +...+..+..+++|++|++++|. +.. +|..
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~------~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~ 113 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCP------RSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI 113 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECT------TCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcC------Ccc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHH
Confidence 4788999887642 4556777 899999999 887 66666667889999999999998 653 8888
Q ss_pred hhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccc--cCCcccCCCccCcccCeEEE-cCcCCCccCccccc
Q 036753 501 LCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLR--YLPAGIGELIRLRRVREFVV-GGGYDRACSLGSLK 577 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~~~~~-~~~~~~~~~~~~L~ 577 (725)
+.++++|++|++++|......|..++++++|++|++++|..+. .+|..+..+++|++|++.++ .... ......+.
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~ 191 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVA 191 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHH
Confidence 9999999999999998555788889999999999999995554 36666888999999999877 4432 11233467
Q ss_pred cCC-CCCceEEeCcC-CCCChhhhhhhccccccccCcEEEEecC-CCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcE
Q 036753 578 KLN-FLQQCGIRGLG-GVSDAGEAARAELEKKKYLLKLGLHFDR-IRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNL 654 (725)
Q Consensus 578 ~L~-~L~~L~i~~~~-~~~~~~~~~~~~l~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 654 (725)
.++ +|+.|++.++. .+.+ ......+..+++|+.|++++|. ++ ...+..+..+++|++|
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~-----------------~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLK-----------------NDCFQEFFQLNYLQHL 252 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCC-----------------GGGGGGGGGCTTCCEE
T ss_pred hcccCCCEEEeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCC-----------------HHHHHHHhCCCCCCEe
Confidence 788 89999998764 2221 3334456678999999999887 32 1234466678999999
Q ss_pred EEeeecCCCCCcccc---cccCccccceeEEcCCCCCCcCCC--CCCc-cccceeecccccCceEeCccccCC
Q 036753 655 GIDEYRGRRNVVPKN---WFMSLTNLRDLSLFWWSNCEHLPP--LGKL-KSLESLLIYGMQSVKRVGNELSEV 721 (725)
Q Consensus 655 ~L~~~~~~~~~~~p~---~l~~l~~L~~L~L~~c~~~~~lp~--l~~l-p~L~~L~L~~~~~l~~i~~~~~~~ 721 (725)
+|++|.... +. .+..+++|+.|+|++| ++. +..+ .+|+.|++.++. +..+.+..++.
T Consensus 253 ~l~~~~~~~----~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~-l~~~~~~~~~~ 315 (336)
T 2ast_B 253 SLSRCYDII----PETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH-FTTIARPTIGN 315 (336)
T ss_dssp ECTTCTTCC----GGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCC-SCCTTCSSCSS
T ss_pred eCCCCCCCC----HHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEeccc-CccccCCcccc
Confidence 999997333 44 5668999999999998 332 3333 247777786554 66665555443
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.1e-14 Score=147.31 Aligned_cols=143 Identities=29% Similarity=0.424 Sum_probs=88.2
Q ss_pred EEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc-cc
Q 036753 400 LHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN-IE 478 (725)
Q Consensus 400 r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~ 478 (725)
+.+.........+|..+ .++++.|.+.++.+... .+..|.++++|++|+|+ +|. +..+|.. +.
T Consensus 19 ~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~------~n~-l~~i~~~~~~ 82 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNI------PADTKKLDLQSNKLSSL---PSKAFHRLTKLRLLYLN------DNK-LQTLPAGIFK 82 (270)
T ss_dssp TEEECTTSCCSSCCSCC------CTTCSEEECCSSCCSCC---CTTSSSSCTTCCEEECC------SSC-CSCCCTTTTS
T ss_pred CEEEccCCCCCccCCCC------CCCCCEEECcCCCCCee---CHHHhcCCCCCCEEECC------CCc-cCeeChhhhc
Confidence 34555545544444332 24677777777765432 23346777777777777 666 5566554 36
Q ss_pred cCccccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcccccCCcc-cCCCccC
Q 036753 479 KLLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAG-IGELIRL 555 (725)
Q Consensus 479 ~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~L 555 (725)
.+++|++|++++|. +..+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSL 159 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCccc
Confidence 67777777777777 666654 35677777777777776 444443 3567777777777777 34445543 5566666
Q ss_pred cccCeE
Q 036753 556 RRVREF 561 (725)
Q Consensus 556 ~~L~~~ 561 (725)
++|++.
T Consensus 160 ~~L~L~ 165 (270)
T 2o6q_A 160 KELRLY 165 (270)
T ss_dssp CEEECC
T ss_pred ceeEec
Confidence 666554
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=6.7e-17 Score=173.05 Aligned_cols=246 Identities=18% Similarity=0.112 Sum_probs=162.3
Q ss_pred hhHHhhcCCcceEEEeccccCCCccccccc----cccccccCccccEEEeecCCCcc----ccchhh-------hcCCCC
Q 036753 443 LPQLFEKLTCLRALELQVRESWPRNSLIKE----IPTNIEKLLHLKYLNLKGQKKIE----NLPETL-------CELYNL 507 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~----lp~~i~~l~~Lr~L~L~~~~~i~----~lp~~i-------~~L~~L 507 (725)
++..+..+++|++|+|+ +|.+... ++..+..+++|++|+|++|. +. .+|..+ .++++|
T Consensus 24 l~~~l~~~~~L~~L~L~------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS------GNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp TSHHHHHCSCCCEEECT------TSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHhcCCCccEEECC------CCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcc
Confidence 55667888889999998 7763222 34456788889999998874 33 345444 688899
Q ss_pred cEeecCCCcccc----cccccccCCCcCcEEecCCCcccc----cCCcccCCC---------ccCcccCeEEEcCcC-CC
Q 036753 508 ECLNVDDCQNLR----ELPRGIGKLRKLMYLHNEDTGCLR----YLPAGIGEL---------IRLRRVREFVVGGGY-DR 569 (725)
Q Consensus 508 ~~L~l~~~~~l~----~lp~~i~~L~~L~~L~l~~~~~~~----~lp~~i~~l---------~~L~~L~~~~~~~~~-~~ 569 (725)
++|+|++|.... .+|..+.++++|++|++++|.... .++..+..+ ++|++|++.++.... ..
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 999999887333 377788888899999998885422 222333334 788888877665542 01
Q ss_pred ccCccccccCCCCCceEEeCcCCCCChhhhhhh-ccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCC
Q 036753 570 ACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARA-ELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPP 648 (725)
Q Consensus 570 ~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 648 (725)
+.....+..+++|+.|++..+.........+.. .+..+++|+.|+|++|.+++. ....++..+..+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~-------------g~~~l~~~l~~~ 243 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------------GSSALAIALKSW 243 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------------HHHHHHHHGGGC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------------HHHHHHHHHccC
Confidence 111135667778888888775432111112333 677888899999988873110 124456677788
Q ss_pred CCCCcEEEeeecCCCC---Cccccccc--CccccceeEEcCCCCCC----cCCC-C-CCccccceeeccccc
Q 036753 649 PNLKNLGIDEYRGRRN---VVPKNWFM--SLTNLRDLSLFWWSNCE----HLPP-L-GKLKSLESLLIYGMQ 709 (725)
Q Consensus 649 ~~L~~L~L~~~~~~~~---~~~p~~l~--~l~~L~~L~L~~c~~~~----~lp~-l-~~lp~L~~L~L~~~~ 709 (725)
++|++|+|++|.+... .+ |.++. .+++|++|+|++|.... .+|. + ..+|+|++|++++|+
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAV-VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHH-HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCcCEEECCCCCCchhhHHHH-HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8899999988876541 02 34443 37889999999885333 2665 4 567899999998886
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=6e-15 Score=149.56 Aligned_cols=127 Identities=28% Similarity=0.455 Sum_probs=87.6
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchh-
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPET- 500 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~- 500 (725)
.+++|+.|.+.++.+.. ++. +..+++|++|+++ +|. +..++ .++.+++|++|++++|. ++.+|..
T Consensus 39 ~l~~L~~L~l~~~~i~~----~~~-l~~l~~L~~L~l~------~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS----VQG-IQYLPNVRYLALG------GNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGV 104 (272)
T ss_dssp HHTTCCEEECTTSCCCC----CTT-GGGCTTCCEEECT------TSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccceeeeeeCCCCccc----ccc-cccCCCCcEEECC------CCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhH
Confidence 67778888888776543 232 6778888888887 776 55554 57778888888888887 6666544
Q ss_pred hhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcc-cCCCccCcccCeEEEc
Q 036753 501 LCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLRRVREFVVG 564 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~ 564 (725)
++++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. ++.+++|++|++.++.
T Consensus 105 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC
Confidence 5778888888888887 5555544 677888888888877 34455443 5667777777665443
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=1.1e-16 Score=175.73 Aligned_cols=302 Identities=17% Similarity=0.044 Sum_probs=150.0
Q ss_pred ceeEEEeeeecCCCCc-ccccccCCCCcc-cccEEEeccCCccccc-cchhHHhhcCCcceEEEeccccCCCccccccc-
Q 036753 397 KKILHLPLTLRRGASV-PISIWGNVTGLR-GLRSLLVKSDEYSWSS-EGLPQLFEKLTCLRALELQVRESWPRNSLIKE- 472 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~-~~~~~~~~~~~~-~L~~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~- 472 (725)
..++.|.+..+.+... +..+...+.... +|++|.+++|.+.... ..++..+..+++|++|+|+ +|. +..
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls------~n~-i~~~ 128 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS------DNL-LGDA 128 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC------SSB-CHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECC------CCc-CchH
Confidence 4567777766554321 112221111111 6788888877654211 1256667778888888887 666 332
Q ss_pred cccccc-----cCccccEEEeecCCCccc-----cchhhhcCCCCcEeecCCCccccccccccc-----CCCcCcEEecC
Q 036753 473 IPTNIE-----KLLHLKYLNLKGQKKIEN-----LPETLCELYNLECLNVDDCQNLRELPRGIG-----KLRKLMYLHNE 537 (725)
Q Consensus 473 lp~~i~-----~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~-----~L~~L~~L~l~ 537 (725)
.+..+. ...+|++|++++|. ++. ++..+.++++|++|++++|......+..+. .+++|++|+++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 122222 24467777777776 442 455666777888888877762222222222 24577777777
Q ss_pred CCcccc----cCCcccCCCccCcccCeEEEcCcCCCccCc-ccc-ccCCCCCceEEeCcCCCCChhhhhhhccccccccC
Q 036753 538 DTGCLR----YLPAGIGELIRLRRVREFVVGGGYDRACSL-GSL-KKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLL 611 (725)
Q Consensus 538 ~~~~~~----~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~-~~L-~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 611 (725)
+|.... .++..+..+++|++|++.++.........+ ..+ ..+++|+.|++..+.-.......+...+..+++|+
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 773322 135555666777777766554321000000 111 13566666666654321111122334455566777
Q ss_pred cEEEEecCCCCCCcc--------------cccCC--CCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCccccccc---
Q 036753 612 KLGLHFDRIRDGDEE--------------QAGRR--ENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFM--- 672 (725)
Q Consensus 612 ~L~L~~~~l~~~~~~--------------~~~~~--~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~--- 672 (725)
.|+|++|.+++.... .+... .........++..+..+++|++|+|++|.+.. ..+..+.
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l 365 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED--AGVRELCQGL 365 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH--HHHHHHHHHH
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc--ccHHHHHHHH
Confidence 777776654211000 00000 00011112233444445566666666665433 1122222
Q ss_pred --CccccceeEEcCCCCCC-----cCCC-CCCccccceeeccccc
Q 036753 673 --SLTNLRDLSLFWWSNCE-----HLPP-LGKLKSLESLLIYGMQ 709 (725)
Q Consensus 673 --~l~~L~~L~L~~c~~~~-----~lp~-l~~lp~L~~L~L~~~~ 709 (725)
..++|++|+|++|. ++ .+|. +..+++|++|++++|+
T Consensus 366 ~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 14566666666663 33 3443 4556677777776664
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=9.5e-17 Score=176.28 Aligned_cols=70 Identities=17% Similarity=0.089 Sum_probs=38.5
Q ss_pred HhhhcCCCCCCCcEEEeeecCCCCCccccccc-----CccccceeEEcCCCCCCc----CCC-CCCccccceeecccccC
Q 036753 641 LLEALGPPPNLKNLGIDEYRGRRNVVPKNWFM-----SLTNLRDLSLFWWSNCEH----LPP-LGKLKSLESLLIYGMQS 710 (725)
Q Consensus 641 ~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~-----~l~~L~~L~L~~c~~~~~----lp~-l~~lp~L~~L~L~~~~~ 710 (725)
+...+..+++|++|+|++|.+.. ..+..+. ..++|++|+|++|..... ++. +..+++|++|++++|.
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 352 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGD--EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR- 352 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHH--HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-
T ss_pred HHHHHhhCCCcceEECCCCCCch--HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-
Confidence 44445556677777777665532 1111222 225777777777742211 222 4556788888888774
Q ss_pred ceE
Q 036753 711 VKR 713 (725)
Q Consensus 711 l~~ 713 (725)
+..
T Consensus 353 i~~ 355 (461)
T 1z7x_W 353 LED 355 (461)
T ss_dssp CHH
T ss_pred ccc
Confidence 443
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.5e-14 Score=148.05 Aligned_cols=170 Identities=24% Similarity=0.268 Sum_probs=107.6
Q ss_pred hhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccccccc
Q 036753 447 FEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIG 526 (725)
Q Consensus 447 ~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 526 (725)
+..+++|+.|+++ ++. +..+|. ++.+++|++|++++|. +..+|. ++++++|++|++++|. +..+|. +.
T Consensus 42 ~~~l~~L~~L~l~------~~~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIAN------NSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LK 109 (291)
T ss_dssp HHHHHTCCEEECT------TSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GT
T ss_pred hhhcCcccEEEcc------CCC-cccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hc
Confidence 3455666777776 555 555543 6667777777777776 666665 6777777777777766 555543 66
Q ss_pred CCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhcccc
Q 036753 527 KLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEK 606 (725)
Q Consensus 527 ~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 606 (725)
.+++|++|++++| .+..+ ..+..+++|+.|++.++.... . ..+..
T Consensus 110 ~l~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~l~~n~l~~----------------------------~-----~~l~~ 154 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNKITD----------------------------I-----TVLSR 154 (291)
T ss_dssp TCTTCCEEECTTS-CCCCC-GGGGGCTTCCEEECCSSCCCC----------------------------C-----GGGGG
T ss_pred cCCCCCEEECCCC-cCCCC-hhhcCCCCCCEEEccCCcCCc----------------------------c-----hhhcc
Confidence 6777777777766 23333 234444444444433221110 0 22445
Q ss_pred ccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC
Q 036753 607 KKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 607 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
+++|+.|++++|.+++. . .+..+++|+.|++++|.+.. + | .+..+++|+.|++++|+
T Consensus 155 l~~L~~L~L~~N~l~~~------------------~-~l~~l~~L~~L~L~~N~i~~--l-~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDI------------------V-PLAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CTTCSEEECCSSCCCCC------------------G-GGTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSEEEEEEEE
T ss_pred CCCCCEEEccCCccccc------------------h-hhcCCCccCEEECCCCcCCC--C-h-hhccCCCCCEEECcCCc
Confidence 67778888887774221 1 16678899999999998877 6 5 47789999999999985
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=6.3e-16 Score=163.81 Aligned_cols=242 Identities=12% Similarity=0.057 Sum_probs=154.0
Q ss_pred CcccccEEEeccCCcccccc-chhHHhhcCC-cceEEEeccccCCCccccccccccccccC-----ccccEEEeecCCCc
Q 036753 422 GLRGLRSLLVKSDEYSWSSE-GLPQLFEKLT-CLRALELQVRESWPRNSLIKEIPTNIEKL-----LHLKYLNLKGQKKI 494 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~-~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l-----~~Lr~L~L~~~~~i 494 (725)
..++|+.|++++|.+..... .+...|..++ +|++|+|+ +|.+....+..+..+ ++|++|+|++|. +
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls------~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS------GNSLGFKNSDELVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc------CCCCCHHHHHHHHHHHhccCCCccEEECcCCc-C
Confidence 45569999999998654310 1125678888 89999999 887333335556654 889999999998 6
Q ss_pred ccc-chh----hhcC-CCCcEeecCCCcccccccc-c----ccCC-CcCcEEecCCCcccc----cCCcccCCCc-cCcc
Q 036753 495 ENL-PET----LCEL-YNLECLNVDDCQNLRELPR-G----IGKL-RKLMYLHNEDTGCLR----YLPAGIGELI-RLRR 557 (725)
Q Consensus 495 ~~l-p~~----i~~L-~~L~~L~l~~~~~l~~lp~-~----i~~L-~~L~~L~l~~~~~~~----~lp~~i~~l~-~L~~ 557 (725)
+.. +.. +..+ ++|++|++++|. +...+. . +..+ ++|++|++++|.... .++..+..+. +|++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 644 343 4444 899999999998 554443 2 3332 589999999884432 3334445554 8888
Q ss_pred cCeEEEcCcCCCccCc-cccccC-CCCCceEEeCcCCCCChhhhhhhcccc-ccccCcEEEEecCCCCCCcccccCCCCC
Q 036753 558 VREFVVGGGYDRACSL-GSLKKL-NFLQQCGIRGLGGVSDAGEAARAELEK-KKYLLKLGLHFDRIRDGDEEQAGRRENE 634 (725)
Q Consensus 558 L~~~~~~~~~~~~~~~-~~L~~L-~~L~~L~i~~~~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 634 (725)
|++.++.........+ ..+..+ ++|+.|+++...-.......+...+.. .++|+.|+|++|.+++...
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--------- 242 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL--------- 242 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH---------
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH---------
Confidence 8887765543111111 233444 478888887654222222234444544 3588888888888654432
Q ss_pred chhHHHHhhhcCCCCCCCcEEEeeecCCCCCcc-------cccccCccccceeEEcCCC
Q 036753 635 EDEDERLLEALGPPPNLKNLGIDEYRGRRNVVP-------KNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 635 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~-------p~~l~~l~~L~~L~L~~c~ 686 (725)
..+...+..+++|+.|+|++|.+.. +. +..+..+++|+.|++++|.
T Consensus 243 ----~~l~~~~~~l~~L~~L~L~~n~l~~--i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 ----ENLKLLKDSLKHLQTVYLDYDIVKN--MSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp ----HHHHHTTTTTTTCSEEEEEHHHHTT--CCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ----HHHHHHHhcCCCccEEEeccCCccc--cCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3444566778888999998887333 21 2345577888888888885
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=1.1e-14 Score=153.43 Aligned_cols=237 Identities=16% Similarity=0.102 Sum_probs=155.4
Q ss_pred cEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-ccccCccccEEEeecCCCccccch-hhhcC
Q 036753 427 RSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPE-TLCEL 504 (725)
Q Consensus 427 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L 504 (725)
+++..+++.++. +|..+ .++++.|+|+ +|. +..+|. .+.++++|++|+|++|...+.+|. .+.++
T Consensus 12 ~~v~C~~~~Lt~----iP~~l--~~~l~~L~Ls------~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESKVTE----IPSDL--PRNAIELRFV------LTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp TEEEEESTTCCS----CCTTC--CTTCSEEEEE------SCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CEEEecCCCCCc----cCcCc--CCCCCEEEcc------CCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 567777776543 45433 3578999999 888 888876 578999999999999984466764 56888
Q ss_pred CCCcEeec-CCCccccccc-ccccCCCcCcEEecCCCcccccCCc-ccCCCccCcccCeEEEcCcCCCccCccccccC-C
Q 036753 505 YNLECLNV-DDCQNLRELP-RGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREFVVGGGYDRACSLGSLKKL-N 580 (725)
Q Consensus 505 ~~L~~L~l-~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L-~ 580 (725)
++|+.+.. .+|. +..+| ..+..+++|++|++++| .+..+|. .+....++..|.+..+.... ......+..+ .
T Consensus 79 ~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~--~l~~~~f~~~~~ 154 (350)
T 4ay9_X 79 PKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIH--TIERNSFVGLSF 154 (350)
T ss_dssp TTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCC--EECTTSSTTSBS
T ss_pred hhhhhhhcccCCc-ccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccc--cccccchhhcch
Confidence 88876444 4454 77764 45788999999999888 4455554 34444455555544322211 0011112222 2
Q ss_pred CCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecC-CCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeee
Q 036753 581 FLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDR-IRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEY 659 (725)
Q Consensus 581 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 659 (725)
.++.|.+....- ..+........+|+.|.+..++ ++... .+.+..+++|+.|+|++|
T Consensus 155 ~l~~L~L~~N~i-----~~i~~~~f~~~~L~~l~l~~~n~l~~i~-----------------~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 155 ESVILWLNKNGI-----QEIHNSAFNGTQLDELNLSDNNNLEELP-----------------NDVFHGASGPVILDISRT 212 (350)
T ss_dssp SCEEEECCSSCC-----CEECTTSSTTEEEEEEECTTCTTCCCCC-----------------TTTTTTEECCSEEECTTS
T ss_pred hhhhhccccccc-----cCCChhhccccchhHHhhccCCcccCCC-----------------HHHhccCcccchhhcCCC
Confidence 344455544221 1112223344678888887543 21111 135677899999999999
Q ss_pred cCCCCCcccccccCccccceeEEcCCCCCCcCCCCCCccccceeeccc
Q 036753 660 RGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPPLGKLKSLESLLIYG 707 (725)
Q Consensus 660 ~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~l~~lp~L~~L~L~~ 707 (725)
.+.. + |.+ .+.+|+.|.+.+|..++.+|.+..|++|+.+++.+
T Consensus 213 ~l~~--l-p~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 RIHS--L-PSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCC--C-CSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CcCc--c-Chh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 9888 8 543 46788888888888899999999999999999864
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=2.7e-15 Score=168.51 Aligned_cols=171 Identities=25% Similarity=0.306 Sum_probs=116.5
Q ss_pred hhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccccccc
Q 036753 447 FEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIG 526 (725)
Q Consensus 447 ~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 526 (725)
+..+++|+.|+++ ++. +..+| .++.+++|++|+|++|. +..+|. ++++++|+.|+|++|. +..+| .+.
T Consensus 39 ~~~L~~L~~L~l~------~n~-i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIAN------NSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCT------TCC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TST
T ss_pred hhcCCCCCEEECc------CCC-CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhc
Confidence 4566777777777 666 66665 47777777777777777 666666 7777777777777776 55555 577
Q ss_pred CCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhcccc
Q 036753 527 KLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEK 606 (725)
Q Consensus 527 ~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~ 606 (725)
.+++|++|++++|. +..+| .+..+++|+.|++ ..+... . ...+..
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L---------------------------s~N~l~-~-----l~~l~~ 151 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYL---------------------------GNNKIT-D-----ITVLSR 151 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEEC---------------------------CSSCCC-C-----CGGGGS
T ss_pred cCCCCCEEEecCCC-CCCCc-cccCCCccCEEEC---------------------------CCCccC-C-----chhhcc
Confidence 77777777777773 33332 3444444444443 332111 1 034567
Q ss_pred ccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC
Q 036753 607 KKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 607 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
+++|+.|+|+.|.+.+. .. +..+++|+.|+|++|.+.. + | .+..+++|+.|+|++|.
T Consensus 152 l~~L~~L~Ls~N~l~~~------------------~~-l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDI------------------VP-LAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CTTCSEEECCSSCCCCC------------------GG-GTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSEEECCSEE
T ss_pred cCCCCEEECcCCcCCCc------------------hh-hccCCCCCEEECcCCCCCC--C-h-HHccCCCCCEEEccCCc
Confidence 78899999998875321 11 6778999999999998877 5 4 57789999999999985
Q ss_pred C
Q 036753 687 N 687 (725)
Q Consensus 687 ~ 687 (725)
.
T Consensus 209 l 209 (605)
T 1m9s_A 209 C 209 (605)
T ss_dssp E
T ss_pred C
Confidence 3
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.6e-13 Score=137.29 Aligned_cols=174 Identities=22% Similarity=0.257 Sum_probs=112.7
Q ss_pred cceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccc-hhhhcCCCCcEeecCCCccccccc-ccccCCC
Q 036753 452 CLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLP-ETLCELYNLECLNVDDCQNLRELP-RGIGKLR 529 (725)
Q Consensus 452 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~ 529 (725)
..+.++++ ++. +..+|..+. .+|++|+|++|. +..++ ..+.++++|++|++++|. +..++ ..+..++
T Consensus 15 ~~~~l~~~------~~~-l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 83 (251)
T 3m19_A 15 GKKEVDCQ------GKS-LDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLT 83 (251)
T ss_dssp GGTEEECT------TCC-CSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred CCeEEecC------CCC-ccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCC
Confidence 45667776 666 667776654 467778887777 55444 457777788888888777 44443 3467777
Q ss_pred cCcEEecCCCcccccCC-cccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhcccccc
Q 036753 530 KLMYLHNEDTGCLRYLP-AGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKK 608 (725)
Q Consensus 530 ~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 608 (725)
+|++|++++|. +..+| ..+..+++|++|++.++.... + + ...+..++
T Consensus 84 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~-----------~------~~~~~~l~ 131 (251)
T 3m19_A 84 ELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKS--------------L-----------P------SGVFDRLT 131 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC--------------C-----------C------TTTTTTCT
T ss_pred cCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCC--------------c-----------C------hhHhccCC
Confidence 78888887773 33444 334555666655543322111 0 0 01234567
Q ss_pred ccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCC
Q 036753 609 YLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSN 687 (725)
Q Consensus 609 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~ 687 (725)
+|+.|+|++|.++... ...+..+++|+.|+|++|.+.. +++..+..+++|+.|+|++|+.
T Consensus 132 ~L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 132 KLKELRLNTNQLQSIP-----------------AGAFDKLTNLQTLSLSTNQLQS--VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSCCB
T ss_pred cccEEECcCCcCCccC-----------------HHHcCcCcCCCEEECCCCcCCc--cCHHHHhCCCCCCEEEeeCCce
Confidence 8888888888754322 1346677889999999888877 6466777888999999988853
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=6.1e-15 Score=156.17 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=40.3
Q ss_pred hhHHhhcCCcceEEEeccccCCCccccccccc-----cccccCc-cccEEEeecCCCcccc-chhhhcC-----CCCcEe
Q 036753 443 LPQLFEKLTCLRALELQVRESWPRNSLIKEIP-----TNIEKLL-HLKYLNLKGQKKIENL-PETLCEL-----YNLECL 510 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-----~~i~~l~-~Lr~L~L~~~~~i~~l-p~~i~~L-----~~L~~L 510 (725)
+|..+...++|++|+|+ +|. +...+ ..+..++ +|++|+|++|. +... +..+..+ ++|++|
T Consensus 14 ~~~~~~~~~~L~~L~Ls------~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLS------LNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp HHHHHTSCTTCCEEECT------TSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHhCCCCceEEEcc------CCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEE
Confidence 34433444445555555 444 33332 3344454 55555555555 3322 3344443 555555
Q ss_pred ecCCCccccc-cccc----ccCC-CcCcEEecCCC
Q 036753 511 NVDDCQNLRE-LPRG----IGKL-RKLMYLHNEDT 539 (725)
Q Consensus 511 ~l~~~~~l~~-lp~~----i~~L-~~L~~L~l~~~ 539 (725)
++++|. +.. .+.. +..+ ++|++|++++|
T Consensus 86 ~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 86 NLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp ECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred ECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC
Confidence 555555 322 2221 2222 45555555555
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=3.3e-14 Score=141.09 Aligned_cols=198 Identities=13% Similarity=0.159 Sum_probs=147.3
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-ccccCccccEEEeec-CCCccccc-hh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKG-QKKIENLP-ET 500 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~-~~~i~~lp-~~ 500 (725)
++|+.|.+.++.+... .+..|.++++|++|+++ +|..+..+|. .+.++++|++|++++ |. ++.+| ..
T Consensus 31 ~~l~~L~l~~n~l~~i---~~~~~~~l~~L~~L~l~------~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI---PSHAFSNLPNISRIYVS------IDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCCCSEE---CTTTTTTCTTCCEEEEE------CCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTS
T ss_pred CcccEEEEeCCcceEE---CHHHccCCCCCcEEeCC------CCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHH
Confidence 3899999999987543 34468899999999999 8854666665 689999999999998 77 88887 46
Q ss_pred hhcCCCCcEeecCCCcccccccccccCCCcCc---EEecCCCcccccCCcc-cCCCccCc-ccCeEEEcCcCCCccCccc
Q 036753 501 LCELYNLECLNVDDCQNLRELPRGIGKLRKLM---YLHNEDTGCLRYLPAG-IGELIRLR-RVREFVVGGGYDRACSLGS 575 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~---~L~l~~~~~~~~lp~~-i~~l~~L~-~L~~~~~~~~~~~~~~~~~ 575 (725)
+.++++|++|++++|. +..+|. +..+++|+ +|++++|..+..+|.. +..+++|+ +|++.++....
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-------- 170 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-------- 170 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--------
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--------
Confidence 8899999999999998 777987 88888888 9999998555666654 77788888 77664332211
Q ss_pred cccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecC-CCCCCcccccCCCCCchhHHHHhhhcCCC-CCCCc
Q 036753 576 LKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDR-IRDGDEEQAGRRENEEDEDERLLEALGPP-PNLKN 653 (725)
Q Consensus 576 L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~ 653 (725)
+. . ..+.. ++|+.|+|++|. ++... ...+..+ ++|+.
T Consensus 171 i~-----------------~------~~~~~-~~L~~L~L~~n~~l~~i~-----------------~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 171 VQ-----------------G------YAFNG-TKLDAVYLNKNKYLTVID-----------------KDAFGGVYSGPSL 209 (239)
T ss_dssp EC-----------------T------TTTTT-CEEEEEECTTCTTCCEEC-----------------TTTTTTCSBCCSE
T ss_pred cC-----------------H------hhcCC-CCCCEEEcCCCCCcccCC-----------------HHHhhccccCCcE
Confidence 00 0 11222 578888888773 42211 2345667 89999
Q ss_pred EEEeeecCCCCCcccccccCccccceeEEcCCCC
Q 036753 654 LGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSN 687 (725)
Q Consensus 654 L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~ 687 (725)
|++++|.+.. + |.. .+++|+.|++.+|..
T Consensus 210 L~l~~N~l~~--l-~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 210 LDVSQTSVTA--L-PSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EECTTCCCCC--C-CCT--TCTTCSEEECTTC--
T ss_pred EECCCCcccc--C-Chh--HhccCceeeccCccC
Confidence 9999999887 7 543 688999999998753
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=7.9e-15 Score=151.77 Aligned_cols=202 Identities=17% Similarity=0.104 Sum_probs=137.5
Q ss_pred CcccccEEEeccCCccccccchhHHh--hcCCcceEEEeccccCCCccccccccc----cccccCccccEEEeecCCCcc
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLF--EKLTCLRALELQVRESWPRNSLIKEIP----TNIEKLLHLKYLNLKGQKKIE 495 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~~~~~~~~~~lp----~~i~~l~~Lr~L~L~~~~~i~ 495 (725)
.+++|+.|.+.+|.+... .|..+ ..+++|++|+|+ +|.+....| ..+..+++|++|++++|. +.
T Consensus 89 ~~~~L~~L~l~~n~l~~~---~~~~~~~~~~~~L~~L~Ls------~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~ 158 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGT---MPPLPLEATGLALSSLRLR------NVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SP 158 (310)
T ss_dssp HHSCCCEEEEESCCCBSC---CCCCSSSCCCBCCSSCEEE------SCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SC
T ss_pred ccCceeEEEeeCCEeccc---hhhhhhhccCCCCCEEEee------cccccchhhhhHHHHhhhccCCCEEEeeCCC-cc
Confidence 456799999999986533 44445 889999999999 887333333 335578899999999999 55
Q ss_pred ccc-hhhhcCCCCcEeecCCCccccc--ccc--cccCCCcCcEEecCCCcccccCCcc----cCCCccCcccCeEEEcCc
Q 036753 496 NLP-ETLCELYNLECLNVDDCQNLRE--LPR--GIGKLRKLMYLHNEDTGCLRYLPAG----IGELIRLRRVREFVVGGG 566 (725)
Q Consensus 496 ~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L~~~~~~~~ 566 (725)
.+| ..++++++|++|++++|..... +|. .+..+++|++|++++| .+..+|.. ++.+++|++|++.++...
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 554 6788999999999999984332 333 2478999999999998 44444432 355667777766544433
Q ss_pred CCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcC
Q 036753 567 YDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALG 646 (725)
Q Consensus 567 ~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 646 (725)
...+..+. .+..+++|+.|+|++|.++. ++..+
T Consensus 238 ~~~p~~~~----------------------------~~~~~~~L~~L~Ls~N~l~~------------------lp~~~- 270 (310)
T 4glp_A 238 ATVNPSAP----------------------------RCMWSSALNSLNLSFAGLEQ------------------VPKGL- 270 (310)
T ss_dssp CCCCSCCS----------------------------SCCCCTTCCCEECCSSCCCS------------------CCSCC-
T ss_pred ccchhhHH----------------------------hccCcCcCCEEECCCCCCCc------------------hhhhh-
Confidence 21111111 11223577888888777531 12222
Q ss_pred CCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC
Q 036753 647 PPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 647 ~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
+++|+.|+|++|.+.. + |. +..+++|+.|+|++|+
T Consensus 271 -~~~L~~L~Ls~N~l~~--~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 -PAKLRVLDLSSNRLNR--A-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CSCCSCEECCSCCCCS--C-CC-TTSCCCCSCEECSSTT
T ss_pred -cCCCCEEECCCCcCCC--C-ch-hhhCCCccEEECcCCC
Confidence 3789999999998877 6 54 5678999999999885
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=3.5e-14 Score=159.42 Aligned_cols=171 Identities=20% Similarity=0.238 Sum_probs=132.3
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+++|+.|.+.++.+.. ++. +..+++|+.|+|+ +|. +..+|. +..+++|++|+|++|. +..+| .+
T Consensus 41 ~L~~L~~L~l~~n~i~~----l~~-l~~l~~L~~L~Ls------~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l 105 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS----VQG-IQYLPNVTKLFLN------GNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SL 105 (605)
T ss_dssp HHTTCCCCBCTTCCCCC----CTT-GGGCTTCCEEECT------TSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TS
T ss_pred cCCCCCEEECcCCCCCC----ChH-HccCCCCCEEEee------CCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hh
Confidence 78899999999988653 343 8899999999999 888 777766 8999999999999998 88877 69
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
.++++|++|+|++|. +..+| .+..|++|+.|++++| .+..+ ..++.+++|+.|++..+....
T Consensus 106 ~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~-------------- 167 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISD-------------- 167 (605)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCCCC--------------
T ss_pred ccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcCCC--------------
Confidence 999999999999998 77765 6899999999999998 33444 345555555555543222111
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRG 661 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 661 (725)
. .. +..+++|+.|+|+.|.+++ +..+..+++|+.|+|++|.+
T Consensus 168 --------------~----~~-l~~l~~L~~L~Ls~N~i~~-------------------l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 168 --------------I----VP-LAGLTKLQNLYLSKNHISD-------------------LRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --------------C----GG-GTTCTTCCEEECCSSCCCB-------------------CGGGTTCTTCSEEECCSEEE
T ss_pred --------------c----hh-hccCCCCCEEECcCCCCCC-------------------ChHHccCCCCCEEEccCCcC
Confidence 0 01 5567889999999987421 13577889999999999988
Q ss_pred CC
Q 036753 662 RR 663 (725)
Q Consensus 662 ~~ 663 (725)
..
T Consensus 210 ~~ 211 (605)
T 1m9s_A 210 LN 211 (605)
T ss_dssp EC
T ss_pred cC
Confidence 77
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=5.4e-14 Score=148.09 Aligned_cols=220 Identities=15% Similarity=0.080 Sum_probs=118.0
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-ccccCccccE-EEeecCCCccccc-hh
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKY-LNLKGQKKIENLP-ET 500 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~-L~L~~~~~i~~lp-~~ 500 (725)
++++.|.+++|.+..+ .+..|.++++|++|+|+ +|.+.+.+|. .+.++++|++ +.+.+|. +..+| ..
T Consensus 30 ~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls------~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEIS------QNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEA 99 (350)
T ss_dssp TTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEE------CCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTS
T ss_pred CCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECc------CCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchh
Confidence 4677777777765432 23346777777777777 6664444543 3566666554 4444455 66553 45
Q ss_pred hhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcc-cCCCc-cCcccCeEEEcCcCCCccCccccc
Q 036753 501 LCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAG-IGELI-RLRRVREFVVGGGYDRACSLGSLK 577 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~-~L~~L~~~~~~~~~~~~~~~~~L~ 577 (725)
+.++++|++|++++|. +..+|.. .....++..|++.++..+..+|.. +..+. .+++|++.++......... .
T Consensus 100 f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----f 174 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----F 174 (350)
T ss_dssp BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----S
T ss_pred hhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----c
Confidence 6777777777777776 5555442 344556667776665555555543 33333 4566655544433211111 1
Q ss_pred cCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEe
Q 036753 578 KLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGID 657 (725)
Q Consensus 578 ~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 657 (725)
...+|+.+.+.....+.... ...+.++++|+.|+|+.|.|+.... ..+.+|++|.+.
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~---~~~f~~l~~L~~LdLs~N~l~~lp~--------------------~~~~~L~~L~~l 231 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELP---NDVFHGASGPVILDISRTRIHSLPS--------------------YGLENLKKLRAR 231 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCC---TTTTTTEECCSEEECTTSCCCCCCS--------------------SSCTTCCEEECT
T ss_pred cccchhHHhhccCCcccCCC---HHHhccCcccchhhcCCCCcCccCh--------------------hhhccchHhhhc
Confidence 22234444443222221111 1234566777777777776432211 124566666665
Q ss_pred eecCCCCCcccccccCccccceeEEcC
Q 036753 658 EYRGRRNVVPKNWFMSLTNLRDLSLFW 684 (725)
Q Consensus 658 ~~~~~~~~~~p~~l~~l~~L~~L~L~~ 684 (725)
++...+. + | .+..|++|+.+++.+
T Consensus 232 ~~~~l~~-l-P-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 232 STYNLKK-L-P-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCTTCCC-C-C-CTTTCCSCCEEECSC
T ss_pred cCCCcCc-C-C-CchhCcChhhCcCCC
Confidence 5544432 4 4 355677777777755
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.48 E-value=4.2e-15 Score=168.59 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=17.9
Q ss_pred cCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC
Q 036753 645 LGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 645 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
+..+++|++|+|++|.+....+ +.+...+++|++|+|++|.
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAI-AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHH-HHHHHHCSSCCEEEEESCB
T ss_pred HhcCcccCeeeccCCCCcHHHH-HHHHHhcCccCeeECcCCc
Confidence 3444555555555554322111 2222344555555555553
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.46 E-value=3e-14 Score=161.56 Aligned_cols=256 Identities=14% Similarity=0.033 Sum_probs=142.2
Q ss_pred CcccccEEEeccCCcccc-ccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCc---ccc
Q 036753 422 GLRGLRSLLVKSDEYSWS-SEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKI---ENL 497 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i---~~l 497 (725)
.+++|++|.+.++.+... ...++..+.++++|+.|+++ +|. +..+|..+..+++|++|+++++... ...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~------~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG------DFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS------SCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc------Ccc-HHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 456666666666554311 11244445566666666666 555 4555655666666666666543211 233
Q ss_pred chhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCccccc-CCcccCCCccCcccCeEEEcCcCCCccCccc-
Q 036753 498 PETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRY-LPAGIGELIRLRRVREFVVGGGYDRACSLGS- 575 (725)
Q Consensus 498 p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~- 575 (725)
+..+..+++|+.|+++++. ...+|..+..+++|++|++++|..... ++..+..+++|++|++. .... ...+..
T Consensus 263 ~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~---~~~l~~~ 337 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIG---DRGLEVL 337 (592)
T ss_dssp SSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGH---HHHHHHH
T ss_pred HHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccC---HHHHHHH
Confidence 3455666666666666653 456666677777888888877742111 11225667777777766 1111 112222
Q ss_pred cccCCCCCceEEeC----------cCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhc
Q 036753 576 LKKLNFLQQCGIRG----------LGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEAL 645 (725)
Q Consensus 576 L~~L~~L~~L~i~~----------~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 645 (725)
...+++|+.|++.. +..+.. .........+++|+.|++.++.+ ....+..+
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~l-----------------~~~~~~~l 398 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQ--RGLIALAQGCQELEYMAVYVSDI-----------------TNESLESI 398 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCH--HHHHHHHHHCTTCSEEEEEESCC-----------------CHHHHHHH
T ss_pred HHhCCCCCEEEeecCccccccccccCccCH--HHHHHHHhhCccCeEEEeecCCc-----------------cHHHHHHH
Confidence 24567777777773 333221 22223344577888888876663 12223333
Q ss_pred C-CCCCCCcEEEeeec---CCCCC-----cccccccCccccceeEEcCCCC-CCc--CCCC-CCccccceeeccccc
Q 036753 646 G-PPPNLKNLGIDEYR---GRRNV-----VPKNWFMSLTNLRDLSLFWWSN-CEH--LPPL-GKLKSLESLLIYGMQ 709 (725)
Q Consensus 646 ~-~~~~L~~L~L~~~~---~~~~~-----~~p~~l~~l~~L~~L~L~~c~~-~~~--lp~l-~~lp~L~~L~L~~~~ 709 (725)
. .+++|++|+++++. ..+.. + +..+.++++|++|+|+.|.. +.. ++.+ ..+|+|+.|+|.+|.
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~-~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGV-RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHH-HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHH-HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 3 36788888887432 22210 1 12244688889999887652 221 1222 347889999998776
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=5e-14 Score=156.35 Aligned_cols=188 Identities=17% Similarity=0.112 Sum_probs=102.2
Q ss_pred cceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcC
Q 036753 452 CLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKL 531 (725)
Q Consensus 452 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 531 (725)
+|++|+|+ ++. +..+|..+. ++|++|+|++|. ++.+| ..+++|++|++++|. +..+|. +.+ +|
T Consensus 60 ~L~~L~Ls------~n~-L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLN------RLN-LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECC------SSC-CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeC------CCC-CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 56666665 555 445555442 556666666665 55565 345666666666665 444555 443 56
Q ss_pred cEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccC
Q 036753 532 MYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLL 611 (725)
Q Consensus 532 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 611 (725)
++|++++| .+..+|. .+++|++|++.++.... +.. .+++|+.|++.+..- .. ++. +. ++|+
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~-----lp~--~l~~L~~L~Ls~N~L-~~----lp~-l~--~~L~ 183 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINADNNQLTM-----LPE--LPTSLEVLSVRNNQL-TF----LPE-LP--ESLE 183 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSC-----CCC--CCTTCCEEECCSSCC-SC----CCC-CC--TTCC
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeCCCCccCc-----CCC--cCCCcCEEECCCCCC-CC----cch-hh--CCCC
Confidence 66666665 3344554 34555555554443332 111 234555555544321 11 111 22 6788
Q ss_pred cEEEEecCCCCCCcccccCCCCCchhHHHHhhh-cCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCc
Q 036753 612 KLGLHFDRIRDGDEEQAGRRENEEDEDERLLEA-LGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEH 690 (725)
Q Consensus 612 ~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~ 690 (725)
.|+|++|.|+.... +... ...++.|+.|+|++|.+.. + |.++..+++|+.|+|++|+..+.
T Consensus 184 ~L~Ls~N~L~~lp~---------------~~~~L~~~~~~L~~L~Ls~N~l~~--l-p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 184 ALDVSTNLLESLPA---------------VPVRNHHSEETEIFFRCRENRITH--I-PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp EEECCSSCCSSCCC---------------CC--------CCEEEECCSSCCCC--C-CGGGGGSCTTEEEECCSSSCCHH
T ss_pred EEECcCCCCCchhh---------------HHHhhhcccccceEEecCCCccee--c-CHHHhcCCCCCEEEeeCCcCCCc
Confidence 88888887532110 0001 1223344888888888877 7 77777788888888888865444
Q ss_pred CCC
Q 036753 691 LPP 693 (725)
Q Consensus 691 lp~ 693 (725)
+|.
T Consensus 246 ~p~ 248 (571)
T 3cvr_A 246 IRE 248 (571)
T ss_dssp HHH
T ss_pred CHH
Confidence 443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=8.1e-14 Score=140.22 Aligned_cols=167 Identities=18% Similarity=0.124 Sum_probs=100.5
Q ss_pred cCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCC
Q 036753 449 KLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKL 528 (725)
Q Consensus 449 ~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 528 (725)
.+..+..++++ .+. +..++ .+..+.+|++|++++|. +..+| .++.+++|++|++++|. +..+|. +..+
T Consensus 17 ~l~~l~~l~l~------~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLG------KQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHT------CSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred HHHHHHHHHhc------CCC-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccC
Confidence 34445555565 555 55555 45666777777777776 66666 46677777777777766 555655 6677
Q ss_pred CcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhcccccc
Q 036753 529 RKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKK 608 (725)
Q Consensus 529 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 608 (725)
++|++|++++| .+..+|.... ++|++|++.++.... ...+..++
T Consensus 85 ~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~~N~l~~---------------------------------~~~l~~l~ 128 (263)
T 1xeu_A 85 TKLEELSVNRN-RLKNLNGIPS--ACLSRLFLDNNELRD---------------------------------TDSLIHLK 128 (263)
T ss_dssp SSCCEEECCSS-CCSCCTTCCC--SSCCEEECCSSCCSB---------------------------------SGGGTTCT
T ss_pred CCCCEEECCCC-ccCCcCcccc--CcccEEEccCCccCC---------------------------------ChhhcCcc
Confidence 77777777766 3333332111 333333332221110 01244556
Q ss_pred ccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCC
Q 036753 609 YLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWS 686 (725)
Q Consensus 609 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~ 686 (725)
+|+.|+|++|.+++. ..+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.
T Consensus 129 ~L~~L~Ls~N~i~~~-------------------~~l~~l~~L~~L~L~~N~i~~--~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI-------------------VMLGFLSKLEVLDLHGNEITN--T--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCCCBC-------------------GGGGGCTTCCEEECTTSCCCB--C--TTSTTCCCCCEEEEEEEE
T ss_pred cccEEECCCCcCCCC-------------------hHHccCCCCCEEECCCCcCcc--h--HHhccCCCCCEEeCCCCc
Confidence 677777777763211 245567888888888888776 3 467788889999998885
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=9e-13 Score=134.72 Aligned_cols=169 Identities=20% Similarity=0.211 Sum_probs=109.1
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+++|+.|.+.++.+.. ++. +..+++|++|+++ +|. +..++. +.++++|++|++++|. ++.+|. +
T Consensus 44 ~l~~L~~L~l~~~~i~~----~~~-~~~l~~L~~L~L~------~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l 108 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS----VQG-IQYLPNVTKLFLN------GNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-L 108 (291)
T ss_dssp HHHTCCEEECTTSCCCC----CTT-GGGCTTCCEEECC------SSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-G
T ss_pred hcCcccEEEccCCCccc----Chh-HhcCCCCCEEEcc------CCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-h
Confidence 56667777777766533 232 6667777777777 666 555555 6777777777777776 666654 7
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNF 581 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~ 581 (725)
.++++|++|++++|. +..+| .+..+++|++|++++| .+..+ ..++.+++|++|++.++.... +..+..+++
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~l~~-----~~~l~~l~~ 179 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISD-----IVPLAGLTK 179 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCC-----CGGGTTCTT
T ss_pred ccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCcccc-----chhhcCCCc
Confidence 777777777777776 55553 5667777777777776 33444 456667777777766554443 112566677
Q ss_pred CCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCC
Q 036753 582 LQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRI 620 (725)
Q Consensus 582 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l 620 (725)
|+.|++....- .. ...+..+++|+.|++++|.+
T Consensus 180 L~~L~L~~N~i-~~-----l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 180 LQNLYLSKNHI-SD-----LRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCEEECCSSCC-CB-----CGGGTTCTTCSEEEEEEEEE
T ss_pred cCEEECCCCcC-CC-----ChhhccCCCCCEEECcCCcc
Confidence 77777765422 11 12367788899999988874
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=9.2e-13 Score=126.35 Aligned_cols=145 Identities=12% Similarity=0.185 Sum_probs=68.4
Q ss_pred eeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccccc
Q 036753 398 KILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNI 477 (725)
Q Consensus 398 ~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i 477 (725)
.++.+.+..+.+..++ .+ ..+++|++|.+.+|.+.. ++ .+..+++|++|+++ +|.+....|..+
T Consensus 45 ~L~~L~l~~n~i~~l~-~l----~~l~~L~~L~l~~n~~~~----~~-~l~~l~~L~~L~l~------~n~l~~~~~~~l 108 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GI----EYAHNIKDLTINNIHATN----YN-PISGLSNLERLRIM------GKDVTSDKIPNL 108 (197)
T ss_dssp TCCEEEEESSCCSCCT-TG----GGCTTCSEEEEESCCCSC----CG-GGTTCTTCCEEEEE------CTTCBGGGSCCC
T ss_pred CccEEeccCCCccChH-HH----hcCCCCCEEEccCCCCCc----ch-hhhcCCCCCEEEeE------CCccCcccChhh
Confidence 4455555544444322 12 245555555555553221 12 24555555555555 444222244445
Q ss_pred ccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcc
Q 036753 478 EKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 557 (725)
Q Consensus 478 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 557 (725)
+.+++|++|++++|......|..++++++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++|++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQ 185 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCE
Confidence 555555555555555222344455555555555555554344444 3555555555555555 233333 3444444544
Q ss_pred cCeE
Q 036753 558 VREF 561 (725)
Q Consensus 558 L~~~ 561 (725)
|++.
T Consensus 186 L~l~ 189 (197)
T 4ezg_A 186 LYAF 189 (197)
T ss_dssp EEEC
T ss_pred EEee
Confidence 4443
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=5e-13 Score=128.20 Aligned_cols=127 Identities=15% Similarity=0.167 Sum_probs=90.4
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCcc-ccchh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIE-NLPET 500 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~-~lp~~ 500 (725)
.+++|+.|.+.++.+.. +| .+..+++|++|+++ +|. +..++ .+..+++|++|++++|. +. ..|..
T Consensus 42 ~l~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~l~------~n~-~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD----LT-GIEYAHNIKDLTIN------NIH-ATNYN-PISGLSNLERLRIMGKD-VTSDKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSCCSC----CT-TGGGCTTCSEEEEE------SCC-CSCCG-GGTTCTTCCEEEEECTT-CBGGGSCC
T ss_pred hcCCccEEeccCCCccC----hH-HHhcCCCCCEEEcc------CCC-CCcch-hhhcCCCCCEEEeECCc-cCcccChh
Confidence 67788888888877542 34 37778888888888 665 55443 57778888888888887 44 46777
Q ss_pred hhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEE
Q 036753 501 LCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVV 563 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~ 563 (725)
++++++|++|++++|......|..++.+++|++|++++|..+..+| .+..+++|++|++.++
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 8888888888888887444567778888888888888875455555 4666666666655433
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=2.2e-12 Score=128.94 Aligned_cols=144 Identities=25% Similarity=0.293 Sum_probs=94.4
Q ss_pred EEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-cccccc
Q 036753 401 HLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEK 479 (725)
Q Consensus 401 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 479 (725)
++.........+|..++ ++++.|.+.++.+... .+..|.++++|++|+|+ +|. +..+ |..+..
T Consensus 18 ~l~~~~~~l~~~p~~~~------~~l~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~------~n~-l~~~~~~~~~~ 81 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP------ADTEKLDLQSTGLATL---SDATFRGLTKLTWLNLD------YNQ-LQTLSAGVFDD 81 (251)
T ss_dssp EEECTTCCCSSCCSCCC------TTCCEEECTTSCCCCC---CTTTTTTCTTCCEEECT------TSC-CCCCCTTTTTT
T ss_pred EEecCCCCccccCCCCC------CCCCEEEccCCCcCcc---CHhHhcCcccCCEEECC------CCc-CCccCHhHhcc
Confidence 44444455544444332 4677788887775433 34457777888888887 776 4444 344677
Q ss_pred CccccEEEeecCCCccccch-hhhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCc-ccCCCccCc
Q 036753 480 LLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLR 556 (725)
Q Consensus 480 l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~ 556 (725)
+++|++|++++|. ++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|. .++.+++|+
T Consensus 82 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 82 LTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCC
Confidence 7888888888877 666653 45777888888888876 6666655 467788888888777 4455554 466677777
Q ss_pred ccCeEEE
Q 036753 557 RVREFVV 563 (725)
Q Consensus 557 ~L~~~~~ 563 (725)
+|++.++
T Consensus 159 ~L~L~~N 165 (251)
T 3m19_A 159 TLSLSTN 165 (251)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 7666544
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=9.1e-14 Score=157.66 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=56.0
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccc-----cccccccCccccEEEeecCC-Cc-
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKE-----IPTNIEKLLHLKYLNLKGQK-KI- 494 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~-----lp~~i~~l~~Lr~L~L~~~~-~i- 494 (725)
.+++|++|.+.++..... ..++..+.++++|++|+|+ +|. +.. ++.....+++|++|++++|. .+
T Consensus 128 ~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~------~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 199 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLR------ESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199 (594)
T ss_dssp HCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECT------TCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred hCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCc------CCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCC
Confidence 356777777766632111 1134444567777777776 554 221 22222345566666666654 11
Q ss_pred -cccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCC
Q 036753 495 -ENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNED 538 (725)
Q Consensus 495 -~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 538 (725)
..++.-+.++++|++|++++|..+..+|..+.++++|++|++..
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 12222234456666666666644444555555555555555443
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=3.4e-12 Score=123.49 Aligned_cols=171 Identities=22% Similarity=0.295 Sum_probs=98.2
Q ss_pred ccccccccccccccCccccEEEeecCCCccccchh-hhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccc
Q 036753 466 RNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPET-LCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLR 543 (725)
Q Consensus 466 ~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 543 (725)
++. +..+|..+ ..+|++|++++|. +..+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|. +.
T Consensus 16 ~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 89 (208)
T 2o6s_A 16 SQG-RTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQ 89 (208)
T ss_dssp SSC-CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CCC-ccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc-CC
Confidence 444 55555443 3467777777776 5555543 5667777777777766 5555544 4667777777777663 33
Q ss_pred cCCcc-cCCCccCcccCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCC
Q 036753 544 YLPAG-IGELIRLRRVREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRD 622 (725)
Q Consensus 544 ~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~ 622 (725)
.+|.. ++.+++|++|++.++.... + . ...+..+++|+.|+|++|.+++
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~--------------~-----------~------~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQS--------------L-----------P------DGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCC--------------C-----------C------TTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcc--------------c-----------C------HhHhccCCcCCEEECCCCccce
Confidence 44432 4455555555443221110 0 0 0113445677777777776432
Q ss_pred CCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC-CCCccc
Q 036753 623 GDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP-LGKLKS 699 (725)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~-l~~lp~ 699 (725)
.. ...+..+++|+.|++++|.... .+++|+.|.++.|...+.+|. ++.++.
T Consensus 139 ~~-----------------~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 139 VP-----------------DGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CC-----------------TTTTTTCTTCCEEECCSCCBCC---------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred eC-----------------HHHhccCCCccEEEecCCCeec---------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 21 1235567788888887775432 456778888887766667776 665554
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=4.3e-14 Score=160.36 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=41.3
Q ss_pred CCCCCcEEEeeecCCCCCcccccc-cCccccceeEEcCCCCCCc--CC-CCCCccccceeecccccC
Q 036753 648 PPNLKNLGIDEYRGRRNVVPKNWF-MSLTNLRDLSLFWWSNCEH--LP-PLGKLKSLESLLIYGMQS 710 (725)
Q Consensus 648 ~~~L~~L~L~~~~~~~~~~~p~~l-~~l~~L~~L~L~~c~~~~~--lp-~l~~lp~L~~L~L~~~~~ 710 (725)
+++|+.|+|++|.+.. ..+..+ ..+++|+.|+|++|.. +. ++ ....+|+|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSD--LGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSH--HHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcH--HHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6788888888887643 112233 4678899999998864 32 22 145688999999988863
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2.9e-12 Score=119.35 Aligned_cols=133 Identities=21% Similarity=0.190 Sum_probs=108.2
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccc-cchh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIEN-LPET 500 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-lp~~ 500 (725)
..++|+.|.+.+|.+.. +.+|..+..+++|++|+++ +|. +..+ ..++.+++|++|++++|. +.. +|..
T Consensus 22 ~~~~L~~L~l~~n~l~~--~~i~~~~~~l~~L~~L~l~------~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLI------NVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCBT--TBCSSCCGGGGGCCEEEEE------SSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHH
T ss_pred CcccCCEEECCCCCCCh--hhHHHHHHhCCCCCEEeCc------CCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHHH
Confidence 45789999999988641 1256667889999999999 888 6666 678899999999999998 666 8887
Q ss_pred hhcCCCCcEeecCCCccccccc--ccccCCCcCcEEecCCCcccccCCc----ccCCCccCcccCeEEEcCcC
Q 036753 501 LCELYNLECLNVDDCQNLRELP--RGIGKLRKLMYLHNEDTGCLRYLPA----GIGELIRLRRVREFVVGGGY 567 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~~~~~~~~~ 567 (725)
+.++++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|++|++..+....
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8889999999999997 77766 67889999999999998 4566665 68889999999988776543
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=9.6e-13 Score=146.09 Aligned_cols=194 Identities=19% Similarity=0.185 Sum_probs=105.6
Q ss_pred eeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccccc
Q 036753 398 KILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNI 477 (725)
Q Consensus 398 ~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i 477 (725)
+++.|.+..+.+..+|..+ +++|+.|.+++|.+.. +| ..+++|++|+|+ +|. +..+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l------~~~L~~L~Ls~N~l~~----ip---~~l~~L~~L~Ls------~N~-l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL------PPQITVLEITQNALIS----LP---ELPASLEYLDAC------DNR-LSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC------CTTCSEEECCSSCCSC----CC---CCCTTCCEEECC------SSC-CSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhH------cCCCCEEECcCCCCcc----cc---cccCCCCEEEcc------CCC-CCCcch-h
Confidence 4555555555554333322 2456666666665432 33 334566666666 555 444555 4
Q ss_pred ccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcc
Q 036753 478 EKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRR 557 (725)
Q Consensus 478 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 557 (725)
.+ +|++|++++|. ++.+|. .+++|++|++++|. +..+|. .+++|++|++++| .+..+|. ++ ++|+.
T Consensus 119 ~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~ 184 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEA 184 (571)
T ss_dssp CT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCE
T ss_pred hc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCE
Confidence 43 56666666665 555555 45666666666665 455554 3556666666665 3344555 43 45555
Q ss_pred cCeEEEcCcCCCccCccccccCCCCCceEEeCcCCCCChhhhhhhcc-ccccccCcEEEEecCCCCCCcccccCCCCCch
Q 036753 558 VREFVVGGGYDRACSLGSLKKLNFLQQCGIRGLGGVSDAGEAARAEL-EKKKYLLKLGLHFDRIRDGDEEQAGRRENEED 636 (725)
Q Consensus 558 L~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 636 (725)
|++.++.... + + . +...+ .....|+.|+|++|.|+.
T Consensus 185 L~Ls~N~L~~--------l-----------------p---~-~~~~L~~~~~~L~~L~Ls~N~l~~-------------- 221 (571)
T 3cvr_A 185 LDVSTNLLES--------L-----------------P---A-VPVRNHHSEETEIFFRCRENRITH-------------- 221 (571)
T ss_dssp EECCSSCCSS--------C-----------------C---C-CC--------CCEEEECCSSCCCC--------------
T ss_pred EECcCCCCCc--------h-----------------h---h-HHHhhhcccccceEEecCCCccee--------------
Confidence 5544332211 0 0 0 00001 122345999999998532
Q ss_pred hHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCcc
Q 036753 637 EDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLT 675 (725)
Q Consensus 637 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~ 675 (725)
++..+..+++|+.|+|++|.+.. ..|.++..++
T Consensus 222 ----lp~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~ 254 (571)
T 3cvr_A 222 ----IPENILSLDPTCTIILEDNPLSS--RIRESLSQQT 254 (571)
T ss_dssp ----CCGGGGGSCTTEEEECCSSSCCH--HHHHHHHHHH
T ss_pred ----cCHHHhcCCCCCEEEeeCCcCCC--cCHHHHHHhh
Confidence 33455568999999999999876 3377776543
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=4.7e-12 Score=124.47 Aligned_cols=128 Identities=26% Similarity=0.381 Sum_probs=102.0
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc-cccCccccEEEeecCCCccccchh-h
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN-IEKLLHLKYLNLKGQKKIENLPET-L 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lp~~-i 501 (725)
++|+.|.+++|.+... .|..|..+++|++|+|+ +|. +..+|.. +..+++|++|+|++|. ++.+|.. +
T Consensus 40 ~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~------~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL---EPGVFDSLINLKELYLG------SNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECC------SSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCCEEEcCCCccCcc---CHHHhhCccCCcEEECC------CCC-CCCcChhhcccCCCcCEEECCCCc-CCccChhHh
Confidence 7788999999886543 46668889999999998 888 6777654 6889999999999998 7777754 5
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCc-ccCCCccCcccCeEEEc
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREFVVG 564 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~ 564 (725)
..+++|++|++++|. +..+|..+..+++|++|++++| .+..+|. .+..+++|++|++.++.
T Consensus 109 ~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 109 DRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 889999999999988 7788988999999999999988 4556664 47777888877765443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=8.8e-12 Score=125.25 Aligned_cols=146 Identities=20% Similarity=0.220 Sum_probs=117.2
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+..++ . +..+++|+.|.+++|.+.. ++. +..+++|++|+|+ +|. +..+|..
T Consensus 41 ~~L~~L~l~~n~i~~l~-~----l~~l~~L~~L~L~~N~i~~----~~~-l~~l~~L~~L~L~------~N~-l~~l~~~ 103 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-G----MQFFTNLKELHLSHNQISD----LSP-LKDLTKLEELSVN------RNR-LKNLNGI 103 (263)
T ss_dssp TTCSEEECTTSCCCCCT-T----GGGCTTCCEEECCSSCCCC----CGG-GTTCSSCCEEECC------SSC-CSCCTTC
T ss_pred CcCcEEECcCCCcccch-H----HhhCCCCCEEECCCCccCC----Chh-hccCCCCCEEECC------CCc-cCCcCcc
Confidence 57788888877766544 2 3488999999999998654 344 8899999999999 888 7777654
Q ss_pred cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCc
Q 036753 477 IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLR 556 (725)
Q Consensus 477 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 556 (725)
.. .+|++|++++|. ++.+| .++++++|++|++++|. +..+| .+..+++|++|++++|. +..+ ..+..+++|+
T Consensus 104 ~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVN 175 (263)
T ss_dssp CC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCC
T ss_pred cc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCC
Confidence 33 889999999998 88876 48999999999999998 77776 68899999999999984 4555 6688899999
Q ss_pred ccCeEEEcCcC
Q 036753 557 RVREFVVGGGY 567 (725)
Q Consensus 557 ~L~~~~~~~~~ 567 (725)
.|++.++....
T Consensus 176 ~L~l~~N~~~~ 186 (263)
T 1xeu_A 176 WIDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEEC
T ss_pred EEeCCCCcccC
Confidence 99998887554
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=1.1e-12 Score=150.93 Aligned_cols=114 Identities=26% Similarity=0.261 Sum_probs=79.1
Q ss_pred hhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccc
Q 036753 443 LPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELP 522 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 522 (725)
.+..|..++.|++|+|+ +|. +..+|..+.++++|++|+|++|. ++.+|..|++|++|++|+|++|. +..+|
T Consensus 216 ~~~~~~~l~~L~~L~Ls------~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp 286 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLS------NLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLP 286 (727)
T ss_dssp ------CCCCCCEEECT------TSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCC
T ss_pred ChhhhccCCCCcEEECC------CCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccC
Confidence 35556777777777777 666 66777777777777777777777 66777777777777777777777 55777
Q ss_pred ccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCc
Q 036753 523 RGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGG 566 (725)
Q Consensus 523 ~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~ 566 (725)
..++.|++|++|+|++| .+..+|..|+.|++|++|++.++...
T Consensus 287 ~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred hhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 77777777777777777 45677777777777777777665544
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.3e-12 Score=117.42 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=102.6
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccc-cchh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIEN-LPET 500 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-lp~~ 500 (725)
..++|+.|.+.+|.+.. +.+|..+..+++|++|+++ +|. +..+ ..++.+++|++|++++|. +.. +|..
T Consensus 15 ~~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~------~n~-l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTI------NVG-LTSI-ANLPKLNKLKKLELSDNR-VSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECT------TSC-CCCC-TTCCCCTTCCEEECCSSC-CCSCTHHH
T ss_pred CCccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECc------CCC-CCCc-hhhhcCCCCCEEECCCCc-ccchHHHH
Confidence 45789999999987641 1256667889999999999 887 6666 678899999999999998 666 8888
Q ss_pred hhcCCCCcEeecCCCccccccc--ccccCCCcCcEEecCCCcccccCCc----ccCCCccCcccCeE
Q 036753 501 LCELYNLECLNVDDCQNLRELP--RGIGKLRKLMYLHNEDTGCLRYLPA----GIGELIRLRRVREF 561 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~~~ 561 (725)
++++++|++|++++|. +..+| ..++.+++|++|++++| .+..+|. .++.+++|+.|++.
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 8889999999999998 66654 77899999999999998 4556665 57788888888753
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=120.72 Aligned_cols=148 Identities=17% Similarity=0.177 Sum_probs=105.8
Q ss_pred EEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-cccc
Q 036753 401 HLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEK 479 (725)
Q Consensus 401 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~ 479 (725)
.+.+..+....+|..+. +.++.|.+++|.+.... .+..|..+++|++|+|+ +|. +..++. .++.
T Consensus 15 ~l~~s~n~l~~iP~~~~------~~~~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~------~N~-i~~i~~~~~~~ 79 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP------QYTAELRLNNNEFTVLE--ATGIFKKLPQLRKINFS------NNK-ITDIEEGAFEG 79 (220)
T ss_dssp EEECCSSCCSSCCSCCC------TTCSEEECCSSCCCEEC--CCCCGGGCTTCCEEECC------SSC-CCEECTTTTTT
T ss_pred EeEeCCCCcccCccCCC------CCCCEEEcCCCcCCccC--chhhhccCCCCCEEECC------CCc-CCEECHHHhCC
Confidence 45555555554554332 35678888888865431 12347888899999998 887 666554 6888
Q ss_pred CccccEEEeecCCCccccch-hhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCccc
Q 036753 480 LLHLKYLNLKGQKKIENLPE-TLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRV 558 (725)
Q Consensus 480 l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 558 (725)
+++|++|+|++|. +..+|. .+.++++|++|++++|......|..+..+++|++|++++|......|..+..+++|++|
T Consensus 80 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 ASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 8999999999988 666654 48889999999999888333446678888999999998885444446778888888888
Q ss_pred CeEEEc
Q 036753 559 REFVVG 564 (725)
Q Consensus 559 ~~~~~~ 564 (725)
++.++.
T Consensus 159 ~L~~N~ 164 (220)
T 2v70_A 159 NLLANP 164 (220)
T ss_dssp ECCSCC
T ss_pred EecCcC
Confidence 776554
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=9.2e-12 Score=121.52 Aligned_cols=128 Identities=22% Similarity=0.318 Sum_probs=93.8
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchh-h
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPET-L 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i 501 (725)
++|+.|.+.+|.+... .+..|..+++|++|+|+ +|. +..+ |..+..+++|++|+|++|. ++.+|.. +
T Consensus 32 ~~l~~L~l~~n~i~~i---~~~~~~~l~~L~~L~Ls------~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI---PPGAFSPYKKLRRIDLS------NNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEE---CTTSSTTCTTCCEEECC------SSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCEEECCCCcCCCc---CHhHhhCCCCCCEEECC------CCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHc
Confidence 5788888888876543 34457788888888888 777 5554 6778888888888888888 7777765 5
Q ss_pred hcCCCCcEeecCCCcccccc-cccccCCCcCcEEecCCCcccccCCc-ccCCCccCcccCeEEEc
Q 036753 502 CELYNLECLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREFVVG 564 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~ 564 (725)
.++++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|. .+..+++|++|++.++.
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 778888888888887 4444 5567888888888888884 444544 47777777777765443
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=1.2e-11 Score=119.65 Aligned_cols=127 Identities=28% Similarity=0.410 Sum_probs=69.6
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc-cccCccccEEEeecCCCccccchh-h
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN-IEKLLHLKYLNLKGQKKIENLPET-L 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lp~~-i 501 (725)
++|+.|.+.++.+... .+..|..+++|++|+++ +|. +..+|.. +..+++|++|++++|. +..+|.. +
T Consensus 28 ~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~------~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL---PNGVFDELTSLTQLYLG------GNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF 96 (208)
T ss_dssp TTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECC------SSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCcEEEcCCCccCcC---ChhhhcccccCcEEECC------CCc-cCccChhhcCCCCCcCEEECCCCc-CCccCHhHh
Confidence 3566666666654322 23335566666666666 555 4444433 4556666666666665 5555543 4
Q ss_pred hcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcc-cCCCccCcccCeEEE
Q 036753 502 CELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLRRVREFVV 563 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~ 563 (725)
.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++.++
T Consensus 97 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 97 DKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 566666666666665 4444443 4556666666666653 3344433 555666666655443
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1e-11 Score=116.64 Aligned_cols=129 Identities=21% Similarity=0.176 Sum_probs=105.0
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
++++|+.|.+.+|.+.. +|......++|++|+++ +|. +..+ ..++.+++|++|++++|. +..+|+.+
T Consensus 17 ~~~~L~~L~l~~n~l~~----i~~~~~~~~~L~~L~Ls------~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV----IENLGATLDQFDAIDFS------DNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSCCCS----CCCGGGGTTCCSEEECC------SSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCCceEEEeeCCCCch----hHHhhhcCCCCCEEECC------CCC-CCcc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 78889999999998653 34423334499999999 888 7666 678899999999999998 88888665
Q ss_pred -hcCCCCcEeecCCCcccccccc--cccCCCcCcEEecCCCcccccCCcc----cCCCccCcccCeEEEcC
Q 036753 502 -CELYNLECLNVDDCQNLRELPR--GIGKLRKLMYLHNEDTGCLRYLPAG----IGELIRLRRVREFVVGG 565 (725)
Q Consensus 502 -~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L~~~~~~~ 565 (725)
+++++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+..
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 899999999999998 788887 7889999999999999 45567764 78888888888876653
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=1.3e-11 Score=114.92 Aligned_cols=133 Identities=26% Similarity=0.281 Sum_probs=110.8
Q ss_pred ceeEEEeeeecCCC--CcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccc-c
Q 036753 397 KKILHLPLTLRRGA--SVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKE-I 473 (725)
Q Consensus 397 ~~~r~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~-l 473 (725)
..++.|.+..+.+. .++.. +..+++|+.|.+.+|.+... ..+..+++|++|+|+ +|. +.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~----~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls------~N~-l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELS------ENR-IFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC----CGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEE------SCC-CCSCC
T ss_pred ccCCEEECCCCCCChhhHHHH----HHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECc------CCc-CchHH
Confidence 67888999888765 44443 34899999999999987543 348889999999999 888 555 7
Q ss_pred ccccccCccccEEEeecCCCccccc--hhhhcCCCCcEeecCCCcccccccc----cccCCCcCcEEecCCCcccccCCc
Q 036753 474 PTNIEKLLHLKYLNLKGQKKIENLP--ETLCELYNLECLNVDDCQNLRELPR----GIGKLRKLMYLHNEDTGCLRYLPA 547 (725)
Q Consensus 474 p~~i~~l~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~~~lp~ 547 (725)
|..++.+++|++|++++|. ++.+| ..+.++++|++|++++|. +..+|. .+..+++|++|++++| ....+|.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 7777889999999999998 88877 789999999999999998 777776 7899999999999998 4455665
Q ss_pred c
Q 036753 548 G 548 (725)
Q Consensus 548 ~ 548 (725)
.
T Consensus 165 ~ 165 (168)
T 2ell_A 165 S 165 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=6.8e-11 Score=115.31 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=92.2
Q ss_pred cEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-ccccCccccEEEeecCCCcccc-chhhhcC
Q 036753 427 RSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENL-PETLCEL 504 (725)
Q Consensus 427 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L 504 (725)
+.+...++.+.. +|..+. +.|+.|+|+ +|. +..+|. .+..+++|++|+|++|. +..+ |..+.++
T Consensus 14 ~~v~c~~~~l~~----iP~~l~--~~l~~L~l~------~n~-i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l 79 (220)
T 2v9t_B 14 NIVDCRGKGLTE----IPTNLP--ETITEIRLE------QNT-IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGL 79 (220)
T ss_dssp TEEECTTSCCSS----CCSSCC--TTCCEEECC------SSC-CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred CEEEcCCCCcCc----CCCccC--cCCCEEECC------CCc-CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCC
Confidence 456666665433 343232 678999998 888 666654 68889999999999998 6655 7789999
Q ss_pred CCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcC
Q 036753 505 YNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGG 565 (725)
Q Consensus 505 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~ 565 (725)
++|++|+|++|. +..+|.. +..+++|++|++++|......|..+..+++|++|++.++..
T Consensus 80 ~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 80 RSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp SSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 999999999988 7778776 57899999999999854433456677788888877665443
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.17 E-value=1.1e-10 Score=114.71 Aligned_cols=130 Identities=24% Similarity=0.310 Sum_probs=109.5
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN 476 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~ 476 (725)
..++.|.+..+.+..++.. .+..+++|+.|.+.+|.+..+ .+..|..+++|++|+|+ +|. +..+|..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~N~l~~i---~~~~~~~l~~L~~L~Ls------~N~-l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPG---VFDSLINLKELYLGSNQLGAL---PVGVFDSLTQLTVLDLG------TNQ-LTVLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECC------SSC-CCCCCTT
T ss_pred CCCCEEEcCCCccCccCHH---HhhCccCCcEEECCCCCCCCc---ChhhcccCCCcCEEECC------CCc-CCccChh
Confidence 6889999998887755333 234899999999999987543 34557899999999999 888 7777654
Q ss_pred -cccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcc
Q 036753 477 -IEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGC 541 (725)
Q Consensus 477 -i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 541 (725)
+..+++|++|+|++|. +..+|..+.++++|++|++++|. +..+|. .+..+++|++|++.+|..
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred HhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6899999999999999 89999999999999999999998 777775 488899999999999843
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=5.4e-11 Score=125.59 Aligned_cols=127 Identities=19% Similarity=0.197 Sum_probs=72.1
Q ss_pred cccEEEeccCCccccccchhHHhh-cCCcceEEEeccccCCCccccccccc-cccccCccccEEEeecCCCccccch-hh
Q 036753 425 GLRSLLVKSDEYSWSSEGLPQLFE-KLTCLRALELQVRESWPRNSLIKEIP-TNIEKLLHLKYLNLKGQKKIENLPE-TL 501 (725)
Q Consensus 425 ~L~~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp~-~i 501 (725)
.++.|++++|.+... .+..|. ++++|++|+|+ +|. +..++ ..+..+++|++|+|++|. +..+|. .+
T Consensus 40 ~l~~L~Ls~N~l~~l---~~~~~~~~l~~L~~L~L~------~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSHNNLSRL---RAEWTPTRLTNLHSLLLS------HNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp TCSEEECCSSCCCEE---CTTSSSSCCTTCCEEECC------SSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred CCCEEECCCCCCCcc---ChhhhhhcccccCEEECC------CCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHh
Confidence 456666666665432 233344 66666677766 666 54443 346666667777776666 555543 45
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCccc----CCCccCcccCeEEE
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGI----GELIRLRRVREFVV 563 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i----~~l~~L~~L~~~~~ 563 (725)
.++.+|++|+|++|......|..+..+++|++|++++| .+..+|..+ ..+++|+.|++.++
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 66666777777666622223445666666677766666 444555443 34555555555443
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=6.6e-11 Score=131.98 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=43.1
Q ss_pred ccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccC
Q 036753 466 RNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYL 545 (725)
Q Consensus 466 ~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~l 545 (725)
+|. +..+|. ++.+++|++|+|++|. ++.+|..++++++|++|+|++|. +..+| .+++|++|+.|++++|. +..+
T Consensus 450 ~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~-l~~~ 523 (567)
T 1dce_A 450 HKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR-LQQS 523 (567)
T ss_dssp TSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC-CCSS
T ss_pred CCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCC-CCCC
Confidence 444 444443 4444445555554444 44444444445555555554444 33444 44444455555554442 2222
Q ss_pred --CcccCCCccCcccCeEEEc
Q 036753 546 --PAGIGELIRLRRVREFVVG 564 (725)
Q Consensus 546 --p~~i~~l~~L~~L~~~~~~ 564 (725)
|..++.+++|++|++.++.
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSG
T ss_pred CCcHHHhcCCCCCEEEecCCc
Confidence 4444444444444444443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=3.4e-11 Score=109.60 Aligned_cols=123 Identities=28% Similarity=0.325 Sum_probs=103.1
Q ss_pred ceeEEEeeeecCCC--CcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccc-c
Q 036753 397 KKILHLPLTLRRGA--SVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKE-I 473 (725)
Q Consensus 397 ~~~r~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~-l 473 (725)
.+++++.+..+... .++.. +..+++|+.|.+.+|.+... ..+..+++|++|+++ +|. +.. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls------~n~-i~~~~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELS------DNR-VSGGL 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECC------SSC-CCSCT
T ss_pred ccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECC------CCc-ccchH
Confidence 57888888888765 34433 34899999999999987543 348889999999999 888 555 8
Q ss_pred ccccccCccccEEEeecCCCccccc--hhhhcCCCCcEeecCCCcccccccc----cccCCCcCcEEecC
Q 036753 474 PTNIEKLLHLKYLNLKGQKKIENLP--ETLCELYNLECLNVDDCQNLRELPR----GIGKLRKLMYLHNE 537 (725)
Q Consensus 474 p~~i~~l~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~ 537 (725)
|..++.+++|++|++++|. ++.+| ..++++++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 8878889999999999999 88765 789999999999999998 777776 68899999999875
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=1.1e-11 Score=142.59 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=97.2
Q ss_pred CCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchh
Q 036753 421 TGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPET 500 (725)
Q Consensus 421 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~ 500 (725)
..+++|+.|.+++|.+.. +|..+.++++|++|+|+ +|. +..+|..+++|++|++|+|++|. ++.+|..
T Consensus 221 ~~l~~L~~L~Ls~n~l~~----l~~~~~~l~~L~~L~Ls------~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~ 288 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFN----ISANIFKYDFLTRLYLN------GNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAE 288 (727)
T ss_dssp -CCCCCCEEECTTSCCSC----CCGGGGGCCSCSCCBCT------TSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred ccCCCCcEEECCCCCCCC----CChhhcCCCCCCEEEee------CCc-CcccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence 378889999999988643 45556789999999998 888 77899889999999999999998 7899999
Q ss_pred hhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCccc
Q 036753 501 LCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGI 549 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i 549 (725)
+++|.+|++|+|++|. +..+|..+++|++|++|+|++|.....+|..+
T Consensus 289 ~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9999999999999997 78899999999999999999986544555444
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=5.3e-11 Score=132.73 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=64.7
Q ss_pred cccEEEeecCCCccccchhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCcccCCCccCcccCeE
Q 036753 482 HLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREF 561 (725)
Q Consensus 482 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~ 561 (725)
.|++|+|++|. ++.+|. ++++++|++|++++|. +..+|..+++|++|++|++++| .+..+| .++.+++|++|++.
T Consensus 442 ~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECC
Confidence 46677777776 666765 7777777777777776 5567777777777777777766 344566 66777777777666
Q ss_pred EEcCcCCCccCccccccCCCCCceEEeC
Q 036753 562 VVGGGYDRACSLGSLKKLNFLQQCGIRG 589 (725)
Q Consensus 562 ~~~~~~~~~~~~~~L~~L~~L~~L~i~~ 589 (725)
++...... ....+..|++|+.|++.+
T Consensus 517 ~N~l~~~~--~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 517 NNRLQQSA--AIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp SSCCCSSS--TTGGGGGCTTCCEEECTT
T ss_pred CCCCCCCC--CcHHHhcCCCCCEEEecC
Confidence 65544311 023455666666666654
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=8.7e-11 Score=124.00 Aligned_cols=175 Identities=16% Similarity=0.120 Sum_probs=126.8
Q ss_pred cEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc-cc-cCccccEEEeecCCCccccc-hhhhc
Q 036753 427 RSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN-IE-KLLHLKYLNLKGQKKIENLP-ETLCE 503 (725)
Q Consensus 427 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~-~l~~Lr~L~L~~~~~i~~lp-~~i~~ 503 (725)
+++.+.++.+.. +|..+ ...+++|+|+ +|. +..+|.. +. .+.+|++|+|++|. +..+| ..+.+
T Consensus 21 ~~l~c~~~~l~~----iP~~~--~~~l~~L~Ls------~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLPN----VPQSL--PSYTALLDLS------HNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSCCSS----CCSSC--CTTCSEEECC------SSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred CEEEeCCCCcCc----cCccC--CCCCCEEECC------CCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccC
Confidence 567777776543 34323 2468999999 888 7777654 55 89999999999999 77776 46999
Q ss_pred CCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCcCCCccCccccccCCCC
Q 036753 504 LYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGGYDRACSLGSLKKLNFL 582 (725)
Q Consensus 504 L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L 582 (725)
+++|++|+|++|. +..+|. .+..+++|++|++++|......|..+..+++|+.|++.++.........+..+..+++|
T Consensus 87 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 87 VPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 9999999999998 777665 48899999999999996544446779999999999998877665333344444678889
Q ss_pred CceEEeCcCCCCChhhhhhhccccccc--cCcEEEEecCC
Q 036753 583 QQCGIRGLGGVSDAGEAARAELEKKKY--LLKLGLHFDRI 620 (725)
Q Consensus 583 ~~L~i~~~~~~~~~~~~~~~~l~~~~~--L~~L~L~~~~l 620 (725)
+.|++....- .... ...+..++. |+.|+|++|.+
T Consensus 166 ~~L~L~~N~l-~~l~---~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 166 MLLDLSSNKL-KKLP---LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CEEECCSSCC-CCCC---HHHHHHSCHHHHTTEECCSSCE
T ss_pred CEEECCCCCC-CccC---HHHhhhccHhhcceEEecCCCc
Confidence 9988876432 1111 123344454 58899998875
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=1.9e-10 Score=112.08 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=106.8
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-c
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-T 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~ 475 (725)
..++.|.+..+.+...+.. ..+..+++|+.|.+.+|.+... .+..|.++++|++|+|+ +|. +..+| .
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~i~~i---~~~~~~~l~~L~~L~Ls------~N~-l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNKITDI---EEGAFEGASGVNEILLT------SNR-LENVQHK 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECC------SSC-CCCCCGG
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCcCCEE---CHHHhCCCCCCCEEECC------CCc-cCccCHh
Confidence 4667888888887654221 1134899999999999987644 45568999999999999 888 66665 4
Q ss_pred ccccCccccEEEeecCCCcccc-chhhhcCCCCcEeecCCCcccccc-cccccCCCcCcEEecCCCcc
Q 036753 476 NIEKLLHLKYLNLKGQKKIENL-PETLCELYNLECLNVDDCQNLREL-PRGIGKLRKLMYLHNEDTGC 541 (725)
Q Consensus 476 ~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 541 (725)
.++.+++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+ |..+..+++|+.|++++|..
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 58999999999999999 6666 6789999999999999998 5555 77899999999999999853
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=2e-10 Score=107.74 Aligned_cols=125 Identities=18% Similarity=0.125 Sum_probs=106.0
Q ss_pred ceeEEEeeeecCCCCcccccccCCCCcc-cccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc
Q 036753 397 KKILHLPLTLRRGASVPISIWGNVTGLR-GLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT 475 (725)
Q Consensus 397 ~~~r~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~ 475 (725)
.+++.|.+..+.+..++. +. .+. +|+.|++++|.+... ..|..+++|++|+|+ +|. +..+|.
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~----~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls------~N~-l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LG----ATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVN------NNR-ICRIGE 81 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GG----GGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECC------SSC-CCEECS
T ss_pred CCceEEEeeCCCCchhHH-hh----hcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECC------CCc-ccccCc
Confidence 578899998888775432 22 444 999999999987643 248889999999999 888 778876
Q ss_pred cc-ccCccccEEEeecCCCccccch--hhhcCCCCcEeecCCCccccccccc----ccCCCcCcEEecCCCc
Q 036753 476 NI-EKLLHLKYLNLKGQKKIENLPE--TLCELYNLECLNVDDCQNLRELPRG----IGKLRKLMYLHNEDTG 540 (725)
Q Consensus 476 ~i-~~l~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 540 (725)
.+ +.+++|++|++++|. ++.+|. .++++++|++|++++|. +..+|.. +..+++|+.|++++|.
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 65 899999999999999 899997 89999999999999998 7788875 8999999999998884
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=2.7e-10 Score=108.42 Aligned_cols=104 Identities=29% Similarity=0.391 Sum_probs=49.9
Q ss_pred cccEEEeccCCccccccchhH-HhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccch-hh
Q 036753 425 GLRSLLVKSDEYSWSSEGLPQ-LFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPE-TL 501 (725)
Q Consensus 425 ~L~~L~l~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~-~i 501 (725)
+|+.|.+.+|.+... .+. .|..+++|++|+|+ +|. +..+ |..++.+++|++|+|++|. ++.+|. .+
T Consensus 30 ~l~~L~l~~n~i~~~---~~~~~~~~l~~L~~L~Ls------~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 98 (192)
T 1w8a_A 30 HTTELLLNDNELGRI---SSDGLFGRLPHLVKLELK------RNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMF 98 (192)
T ss_dssp TCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECC------SSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSS
T ss_pred CCCEEECCCCcCCcc---CCccccccCCCCCEEECC------CCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHh
Confidence 455555555544321 111 24455555555555 554 3332 4445555555555555555 443332 24
Q ss_pred hcCCCCcEeecCCCcccccccccccCCCcCcEEecCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDT 539 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 539 (725)
.++++|++|++++|......|..+..+++|++|++++|
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 55555555555555522233444555555555555555
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=4.8e-10 Score=106.69 Aligned_cols=125 Identities=17% Similarity=0.207 Sum_probs=100.6
Q ss_pred cEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc--cccCccccEEEeecCCCcccc-chhhhc
Q 036753 427 RSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN--IEKLLHLKYLNLKGQKKIENL-PETLCE 503 (725)
Q Consensus 427 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~--i~~l~~Lr~L~L~~~~~i~~l-p~~i~~ 503 (725)
+++.++++.+.. +|..+. .+|++|+++ +|. +..+|.. ++.+++|++|+|++|. ++.+ |..+.+
T Consensus 11 ~~l~~s~~~l~~----ip~~~~--~~l~~L~l~------~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE----IPRDIP--LHTTELLLN------DNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSS----CCSCCC--TTCSEEECC------SCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred CEEEcCCCCcCc----CccCCC--CCCCEEECC------CCc-CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC
Confidence 677888877543 343332 389999999 888 7777653 8999999999999999 6665 788999
Q ss_pred CCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcccccCCcccCCCccCcccCeEEEcCc
Q 036753 504 LYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPAGIGELIRLRRVREFVVGGG 566 (725)
Q Consensus 504 L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~ 566 (725)
+++|++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++.++...
T Consensus 77 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 77 ASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999999998 555554 5889999999999999665566788999999999988766544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1e-11 Score=119.08 Aligned_cols=103 Identities=22% Similarity=0.246 Sum_probs=52.5
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETL 501 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 501 (725)
.+++|+.|.+++|.+.. +| .+..+++|++|+++ +|. +..+|..++.+++|++|++++|. ++.+| .+
T Consensus 46 ~l~~L~~L~ls~n~l~~----l~-~~~~l~~L~~L~l~------~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK----IS-SLSGMENLRILSLG------RNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp HTTTCSEEECSEEEESC----CC-CHHHHTTCCEEEEE------EEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred cCCCCCEEECCCCCCcc----cc-ccccCCCCCEEECC------CCC-cccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 45555555555554322 23 34555555555555 444 44555544445555555555555 44444 35
Q ss_pred hcCCCCcEeecCCCcccccccc--cccCCCcCcEEecCCC
Q 036753 502 CELYNLECLNVDDCQNLRELPR--GIGKLRKLMYLHNEDT 539 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~ 539 (725)
+++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 555555555555554 443332 3455555555555555
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.8e-12 Score=124.46 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=86.3
Q ss_pred hhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccchhhhcCCCCcEeecCCCccccccc
Q 036753 443 LPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLPETLCELYNLECLNVDDCQNLRELP 522 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 522 (725)
+|..+..+++|++|+++ +|. +..+| .++.+++|++|++++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls------~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALS------TNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECS------EEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECC------CCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 55578888999999998 777 77787 78888899999999988 88888888888899999999887 67777
Q ss_pred ccccCCCcCcEEecCCCcccccCCc--ccCCCccCcccCeEEEc
Q 036753 523 RGIGKLRKLMYLHNEDTGCLRYLPA--GIGELIRLRRVREFVVG 564 (725)
Q Consensus 523 ~~i~~L~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~~~~~~ 564 (725)
.+..+++|++|++++| .+..+|. .+..+++|++|++.++.
T Consensus 110 -~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 6888888999998888 3444443 56667777777665543
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.2e-09 Score=103.89 Aligned_cols=102 Identities=19% Similarity=0.356 Sum_probs=48.2
Q ss_pred cccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-cccccCccccEEEeecCCCccccch-hhh
Q 036753 425 GLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-TNIEKLLHLKYLNLKGQKKIENLPE-TLC 502 (725)
Q Consensus 425 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp~-~i~ 502 (725)
+|+.|.+.+|.+.. +|..|.++++|++|+|+ +|. +..++ ..+..+++|++|+|++|. ++.+|. .+.
T Consensus 32 ~l~~L~L~~n~i~~----ip~~~~~l~~L~~L~Ls------~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~ 99 (193)
T 2wfh_A 32 DVTELYLDGNQFTL----VPKELSNYKHLTLIDLS------NNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFD 99 (193)
T ss_dssp TCCEEECCSSCCCS----CCGGGGGCTTCCEEECC------SSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTT
T ss_pred CCCEEECCCCcCch----hHHHhhcccCCCEEECC------CCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhC
Confidence 45555555554321 23344555555555555 444 33332 234555555555555555 443332 345
Q ss_pred cCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCC
Q 036753 503 ELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDT 539 (725)
Q Consensus 503 ~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 539 (725)
++++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 100 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 100 GLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 55555555555554 4444432 444555555555544
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=2.1e-09 Score=102.26 Aligned_cols=122 Identities=18% Similarity=0.267 Sum_probs=98.5
Q ss_pred cEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccc-hhhhcCC
Q 036753 427 RSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLP-ETLCELY 505 (725)
Q Consensus 427 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~ 505 (725)
+++.+.++.+.. +|..+ .++|++|+|+ +|. +..+|..+..+++|++|+|++|. ++.+| ..+.+++
T Consensus 13 ~~l~~~~~~l~~----ip~~~--~~~l~~L~L~------~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKV----LPKGI--PRDVTELYLD------GNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSCCSS----CCSCC--CTTCCEEECC------SSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CEEEcCCCCCCc----CCCCC--CCCCCEEECC------CCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCC
Confidence 466777766543 34323 2589999999 888 88999999999999999999999 77776 5699999
Q ss_pred CCcEeecCCCcccccccc-cccCCCcCcEEecCCCcccccCCc-ccCCCccCcccCeEEEc
Q 036753 506 NLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVREFVVG 564 (725)
Q Consensus 506 ~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~ 564 (725)
+|++|+|++|. +..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++.++.
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 99999999998 666654 6899999999999999 5566776 47889999998876554
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=2.1e-09 Score=100.79 Aligned_cols=105 Identities=29% Similarity=0.438 Sum_probs=67.6
Q ss_pred ccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccc-cccCccccEEEeecCCCccccchh-h
Q 036753 424 RGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTN-IEKLLHLKYLNLKGQKKIENLPET-L 501 (725)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lp~~-i 501 (725)
++|+.|.+.+|.+... .+..|..+++|++|+++ +|. +..+|.. ++.+++|++|++++|. ++.+|.. +
T Consensus 28 ~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~------~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNKLQSL---PHGVFDKLTQLTKLSLS------QNQ-IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVF 96 (177)
T ss_dssp TTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECC------SSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCcEEEeCCCcccEe---CHHHhcCcccccEEECC------CCc-ceEeChhHccCCCccCEEECCCCC-ccccCHHHh
Confidence 5677777777665422 33445667777777777 666 5555443 5667777777777776 6666543 4
Q ss_pred hcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCc
Q 036753 502 CELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTG 540 (725)
Q Consensus 502 ~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 540 (725)
.++++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 97 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 97 DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 667777777777776 5566655 3567777777777763
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=3.7e-09 Score=98.63 Aligned_cols=98 Identities=22% Similarity=0.372 Sum_probs=70.3
Q ss_pred cEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchh-hhcC
Q 036753 427 RSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPET-LCEL 504 (725)
Q Consensus 427 ~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i~~L 504 (725)
+.+.+.++.+.. +|..+. ++|++|+|+ +|. +..+ |..++++++|++|+|++|. ++.+|.. +.++
T Consensus 15 ~~l~~~~n~l~~----iP~~~~--~~L~~L~Ls------~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLAS----VPAGIP--TDKQRLWLN------NNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSS----CCSCCC--TTCSEEECC------SSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cEEEeCCCCCCc----cCCCcC--CCCcEEEeC------CCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCc
Confidence 567777776533 343232 678888887 777 5554 5567788888888888887 7777765 4778
Q ss_pred CCCcEeecCCCccccccccc-ccCCCcCcEEecCCC
Q 036753 505 YNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDT 539 (725)
Q Consensus 505 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 539 (725)
++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCC
Confidence 888888888877 6667765 777888888888877
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=5e-09 Score=97.76 Aligned_cols=100 Identities=25% Similarity=0.378 Sum_probs=68.6
Q ss_pred eEEEeccccCCCccccccccccccccCccccEEEeecCCCcccc-chhhhcCCCCcEeecCCCccccccccc-ccCCCcC
Q 036753 454 RALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENL-PETLCELYNLECLNVDDCQNLRELPRG-IGKLRKL 531 (725)
Q Consensus 454 r~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L 531 (725)
+.++++ ++. +..+|..+. .+|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|.. +.++++|
T Consensus 15 ~~l~~~------~n~-l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQ------NIR-LASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECC------SSC-CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cEEEeC------CCC-CCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchh
Confidence 567776 666 677776654 677777777777 5555 4567777777777777776 6666665 3677777
Q ss_pred cEEecCCCcccccCCcc-cCCCccCcccCeEEEcC
Q 036753 532 MYLHNEDTGCLRYLPAG-IGELIRLRRVREFVVGG 565 (725)
Q Consensus 532 ~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~ 565 (725)
++|++++| .+..+|.. +..+++|++|++.++..
T Consensus 84 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 84 TQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred hEEECCCC-ccceeCHHHhccccCCCEEEeCCCCc
Confidence 77777777 44556654 67777777777665543
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=3.5e-08 Score=102.47 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=139.7
Q ss_pred cccccEEEeccCCccccccchhHHhhc-CCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCccccc-hh
Q 036753 423 LRGLRSLLVKSDEYSWSSEGLPQLFEK-LTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENLP-ET 500 (725)
Q Consensus 423 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp-~~ 500 (725)
+.+++.|.+.++-.. ..+. .+.. +++|++|+|+ ++. +......-+.++.++++.+..+. +| ..
T Consensus 24 ~~~l~~L~l~g~i~~---~~~~-~l~~~l~~L~~LdLs------~n~-i~~~~~~~~~~~~~~~~~~~~~~----I~~~a 88 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA---EDFR-HLRDEFPSLKVLDIS------NAE-IKMYSGKAGTYPNGKFYIYMANF----VPAYA 88 (329)
T ss_dssp HHHCSEEEEEEEECH---HHHH-HHHHSCTTCCEEEEE------EEE-ECCEEESSSSSGGGCCEEECTTE----ECTTT
T ss_pred hCceeEEEEeccccH---HHHH-HHHHhhccCeEEecC------cce-eEEecCccccccccccccccccc----cCHHH
Confidence 566777877764211 0122 2333 7788888888 777 44111111223334555554442 33 23
Q ss_pred hhc--------CCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCC-cccCCCccCcccCeEEEcC----c
Q 036753 501 LCE--------LYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLP-AGIGELIRLRRVREFVVGG----G 566 (725)
Q Consensus 501 i~~--------L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~----~ 566 (725)
+.+ +++|+.|++.+ . +..++.. +..+++|+.|++..+.. ..++ ..+..+.++..+....... .
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i-~~i~~~aF~~~~~l~~l~~~~~~~~~~~~ 165 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTA-PNLLPEALADSVTAIFIPLGSSDAYRFKN 165 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSC-CEECTTSSCTTTCEEEECTTCTHHHHTST
T ss_pred hcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCc-cccchhhhcCCCceEEecCcchhhhhccc
Confidence 455 77777777776 3 5666554 66777777777776633 2333 3344444444333211000 0
Q ss_pred CCCccCccccc-----------------------cCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCC
Q 036753 567 YDRACSLGSLK-----------------------KLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDG 623 (725)
Q Consensus 567 ~~~~~~~~~L~-----------------------~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~ 623 (725)
......+..+. .+.++..+.+.+. +.. .........+++|+.|+|..|.+...
T Consensus 166 ~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDN--ADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp TTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCH--HHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred cccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecH--HHHHHHHHhcCCCeEEECCCCCccee
Confidence 00000111111 1122222222211 000 00111111367888888887663221
Q ss_pred CcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCccccc-eeEEcCCCCCCcCCC--CCCcccc
Q 036753 624 DEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLR-DLSLFWWSNCEHLPP--LGKLKSL 700 (725)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~-~L~L~~c~~~~~lp~--l~~lp~L 700 (725)
. ...+..+++|+.|.|..+ ... +++..|.++++|+ .|.|.+ .++.++. +..+++|
T Consensus 242 ~-----------------~~aF~~~~~L~~l~l~~n-i~~--I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 242 P-----------------DFTFAQKKYLLKIKLPHN-LKT--IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp C-----------------TTTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred c-----------------HhhhhCCCCCCEEECCcc-cce--ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 1 236778889999999886 445 6577788899999 999987 5667765 8889999
Q ss_pred ceeecccccCceEeCccccCCC
Q 036753 701 ESLLIYGMQSVKRVGNELSEVR 722 (725)
Q Consensus 701 ~~L~L~~~~~l~~i~~~~~~~~ 722 (725)
+.|++.++. ++.|+...|.+.
T Consensus 300 ~~l~l~~n~-i~~I~~~aF~~~ 320 (329)
T 3sb4_A 300 RYVLATGDK-ITTLGDELFGNG 320 (329)
T ss_dssp EEEEECSSC-CCEECTTTTCTT
T ss_pred CEEEeCCCc-cCccchhhhcCC
Confidence 999987665 899998877653
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=8.1e-09 Score=95.97 Aligned_cols=99 Identities=24% Similarity=0.380 Sum_probs=60.5
Q ss_pred ccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccEEEeecCCCccccchh-hhc
Q 036753 426 LRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKYLNLKGQKKIENLPET-LCE 503 (725)
Q Consensus 426 L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i~~ 503 (725)
.+.++++++.+.. +|..+ .++|++|+|+ +|. +..+ |..++.+++|++|+|++|. ++.+|.. +.+
T Consensus 11 ~~~l~~s~n~l~~----ip~~~--~~~l~~L~L~------~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLAS----VPTGI--PTTTQVLYLY------DNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCSS----CCSCC--CTTCSEEECC------SSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEeCCCCcCc----cCccC--CCCCcEEEcC------CCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccC
Confidence 4566666665433 23222 2566677776 666 4444 4556667777777777776 6666554 366
Q ss_pred CCCCcEeecCCCccccccccc-ccCCCcCcEEecCCC
Q 036753 504 LYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDT 539 (725)
Q Consensus 504 L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 539 (725)
+++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 77 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 7777777777766 5555553 666677777777666
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=1.7e-08 Score=94.41 Aligned_cols=123 Identities=25% Similarity=0.405 Sum_probs=93.7
Q ss_pred ccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-ccccCccccEEEeecCCCccccchh-hhc
Q 036753 426 LRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEKLLHLKYLNLKGQKKIENLPET-LCE 503 (725)
Q Consensus 426 L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~~-i~~ 503 (725)
.+.+.+.++.+.. +|. .-.++|+.|+++ ++. +..+|. .++.+++|++|++++|. ++.+|.. +.+
T Consensus 9 ~~~l~~~~~~l~~----~p~--~~~~~l~~L~l~------~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTS----VPT--GIPSSATRLELE------SNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSCCSS----CCT--TCCTTCSEEECC------SSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEecCCCCcc----CCC--CCCCCCcEEEeC------CCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccC
Confidence 4566666666433 332 223689999999 888 666665 46889999999999998 7887765 689
Q ss_pred CCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcc-cCCCccCcccCeEEEc
Q 036753 504 LYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLRRVREFVVG 564 (725)
Q Consensus 504 L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~ 564 (725)
+++|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.++.
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 9999999999998 6677665 688999999999998 55667765 4778888888776554
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=7.3e-09 Score=107.66 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=137.6
Q ss_pred cccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCcccccccccc-cccc--------CccccEEEeecCCC
Q 036753 423 LRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPT-NIEK--------LLHLKYLNLKGQKK 493 (725)
Q Consensus 423 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~--------l~~Lr~L~L~~~~~ 493 (725)
+++|+.|++++|.+..... .+ ..++.++.+.+. .+ .+|. .+.+ +.+|+.|+|.+ .
T Consensus 48 l~~L~~LdLs~n~i~~~~~-~~---~~~~~~~~~~~~------~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~- 111 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSG-KA---GTYPNGKFYIYM------AN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-K- 111 (329)
T ss_dssp CTTCCEEEEEEEEECCEEE-SS---SSSGGGCCEEEC------TT----EECTTTTEEEETTEEEECTTCCC-CBCT-T-
T ss_pred hccCeEEecCcceeEEecC-cc---cccccccccccc------cc----ccCHHHhcccccccccccCCCcEEECCc-c-
Confidence 7889999999988652111 11 112224445444 32 2322 2445 78888888887 4
Q ss_pred ccccch-hhhcCCCCcEeecCCCcccccccc-cccCCCcCcEEecCCCcc---cccCC-cccCCCccC------------
Q 036753 494 IENLPE-TLCELYNLECLNVDDCQNLRELPR-GIGKLRKLMYLHNEDTGC---LRYLP-AGIGELIRL------------ 555 (725)
Q Consensus 494 i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~---~~~lp-~~i~~l~~L------------ 555 (725)
++.++. .|.+|++|+.|++.+|. +..++. .+....++..+....... ...+. ..+..+.+|
T Consensus 112 i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l 190 (329)
T 3sb4_A 112 IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL 190 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH
T ss_pred ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH
Confidence 677764 57788888888888776 444444 355555555555443210 00000 112122222
Q ss_pred --------------cccCeEEEcCcCCCccCccccc-cCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCC
Q 036753 556 --------------RRVREFVVGGGYDRACSLGSLK-KLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRI 620 (725)
Q Consensus 556 --------------~~L~~~~~~~~~~~~~~~~~L~-~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l 620 (725)
..+...+.-. ......+. .+++|+.+++.... +. ......+.++.+|+.|+|..+ +
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~l~----~~~~~~l~~~~~~L~~l~L~~n~-i~---~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 191 EDEIMKAGLQPRDINFLTIEGKLD----NADFKLIRDYMPNLVSLDISKTN-AT---TIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp HHHHHHTTCCGGGCSEEEEEECCC----HHHHHHHHHHCTTCCEEECTTBC-CC---EECTTTTTTCTTCCEEECCTT-C
T ss_pred HHHHhhcccCccccceEEEeeeec----HHHHHHHHHhcCCCeEEECCCCC-cc---eecHhhhhCCCCCCEEECCcc-c
Confidence 2222211100 01111121 26778888776521 11 111245778999999999765 2
Q ss_pred CCCCcccccCCCCCchhHHHHhhhcCCCCCCC-cEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCc
Q 036753 621 RDGDEEQAGRRENEEDEDERLLEALGPPPNLK-NLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKL 697 (725)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~l 697 (725)
.... ..++..+++|+ .|.+.. .... +++..|.++++|+.|++.++ .+..++. +..+
T Consensus 262 ~~I~-----------------~~aF~~~~~L~~~l~l~~-~l~~--I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 262 KTIG-----------------QRVFSNCGRLAGTLELPA-SVTA--IEFGAFMGCDNLRYVLATGD-KITTLGDELFGNG 320 (329)
T ss_dssp CEEC-----------------TTTTTTCTTCCEEEEECT-TCCE--ECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTT
T ss_pred ceeh-----------------HHHhhCChhccEEEEEcc-cceE--EchhhhhCCccCCEEEeCCC-ccCccchhhhcCC
Confidence 1111 24678899999 999988 5555 65788889999999999877 6777776 8889
Q ss_pred cccceeec
Q 036753 698 KSLESLLI 705 (725)
Q Consensus 698 p~L~~L~L 705 (725)
++|+.++.
T Consensus 321 ~~L~~ly~ 328 (329)
T 3sb4_A 321 VPSKLIYK 328 (329)
T ss_dssp CCCCEEEC
T ss_pred cchhhhcc
Confidence 99988764
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=2.9e-08 Score=92.22 Aligned_cols=101 Identities=27% Similarity=0.362 Sum_probs=75.0
Q ss_pred ceEEEeccccCCCccccccccccccccCccccEEEeecCCCcccc-chhhhcCCCCcEeecCCCccccccccc-ccCCCc
Q 036753 453 LRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIENL-PETLCELYNLECLNVDDCQNLRELPRG-IGKLRK 530 (725)
Q Consensus 453 Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~ 530 (725)
.+.++++ ++. +..+|..+. .+|++|+|++|. ++.+ |..+.++++|++|+|++|. +..+|.. +..+++
T Consensus 11 ~~~l~~s------~n~-l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCS------GKS-LASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECT------TSC-CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEeC------CCC-cCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 4677887 777 777887663 678888888888 6666 5567888888888888887 6677665 478888
Q ss_pred CcEEecCCCcccccCCc-ccCCCccCcccCeEEEcC
Q 036753 531 LMYLHNEDTGCLRYLPA-GIGELIRLRRVREFVVGG 565 (725)
Q Consensus 531 L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~ 565 (725)
|++|++++| .+..+|. .+..+++|++|++.++..
T Consensus 80 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 80 LTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 888888888 4555665 477788888887766543
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=1.8e-07 Score=97.82 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=78.8
Q ss_pred EEEeccC-CccccccchhHHhhcCCcceEEEeccccCCCc-cccccccc-cccccCccccEEEeecCCCccccc-hhhhc
Q 036753 428 SLLVKSD-EYSWSSEGLPQLFEKLTCLRALELQVRESWPR-NSLIKEIP-TNIEKLLHLKYLNLKGQKKIENLP-ETLCE 503 (725)
Q Consensus 428 ~L~l~~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~ 503 (725)
.+...++ .+.. +|. +..+++|+.|+|+ + |. +..+| ..++.|.+|++|+|++|. +..+| ..|.+
T Consensus 12 ~v~~~~~n~l~~----ip~-l~~~~~L~~L~l~------~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALDS----LHH-LPGAENLTELYIE------NQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHF 78 (347)
T ss_dssp CEECCSSCCCTT----TTT-SCSCSCCSEEECC------SCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGS
T ss_pred EEEcCCCCCCCc----cCC-CCCCCCeeEEEcc------CCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcC
Confidence 4566665 4432 677 8889999999998 7 66 77776 568999999999999998 77665 46799
Q ss_pred CCCCcEeecCCCcccccccccccCCCcCcEEecCCCc
Q 036753 504 LYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTG 540 (725)
Q Consensus 504 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 540 (725)
|++|+.|+|++|. +..+|..+....+|+.|++.+|.
T Consensus 79 l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 79 TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred CcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCC
Confidence 9999999999998 78888776554459999999884
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=3.7e-06 Score=89.34 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=34.6
Q ss_pred cccEEEeecCCCccccc-hhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCCCcccccCCc-ccCCCccCcccC
Q 036753 482 HLKYLNLKGQKKIENLP-ETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNEDTGCLRYLPA-GIGELIRLRRVR 559 (725)
Q Consensus 482 ~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~ 559 (725)
+|+.+.+.. . ++.++ ..+.++.+|+.+++.+|. +..+|.......+|+.+.+..+ +..++. .+..+++|+++.
T Consensus 158 ~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence 455555543 2 44443 244555555555555544 4455544333455555555432 333332 244455555444
Q ss_pred e
Q 036753 560 E 560 (725)
Q Consensus 560 ~ 560 (725)
+
T Consensus 233 l 233 (401)
T 4fdw_A 233 I 233 (401)
T ss_dssp C
T ss_pred c
Confidence 3
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=1.3e-06 Score=92.77 Aligned_cols=238 Identities=12% Similarity=0.049 Sum_probs=143.6
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-cccccCccccEEEeecCCCccccchh
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-TNIEKLLHLKYLNLKGQKKIENLPET 500 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp~~ 500 (725)
++ +|+.+.+..+ +..+ -...|.++ .|+.+.+. . . +..++ ..+.++.+|+.+++.+|. ++.+|..
T Consensus 134 ~~-~L~~i~l~~~-i~~I---~~~aF~~~-~L~~i~lp------~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~ 198 (401)
T 4fdw_A 134 NS-QIAKVVLNEG-LKSI---GDMAFFNS-TVQEIVFP------S-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPAS 198 (401)
T ss_dssp TC-CCSEEECCTT-CCEE---CTTTTTTC-CCCEEECC------T-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTT
T ss_pred cC-CccEEEeCCC-ccEE---CHHhcCCC-CceEEEeC------C-C-ccEehHHHhhCcccCCeeecCCCc-ceEechh
Confidence 44 6888887765 2222 23346664 68999886 4 3 66664 458889999999999988 8999876
Q ss_pred hhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCcccccCCcc-cCCCccCcccCeEEEcCcCCCccCcccccc
Q 036753 501 LCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTGCLRYLPAG-IGELIRLRRVREFVVGGGYDRACSLGSLKK 578 (725)
Q Consensus 501 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~L~~ 578 (725)
.....+|+.+.+..+ +..++.. +.++++|+.+.+..+ +..++.. +.. .+|+.+.+. ..... -.-..+.+
T Consensus 199 aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~---I~~~aF~~ 269 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTN---IASRAFYY 269 (401)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCE---ECTTTTTT
T ss_pred hEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccE---EChhHhhC
Confidence 666799999999854 6666654 778899999999865 4555544 444 677777662 11111 11123445
Q ss_pred CCCCCceEEeCcCCCCCh-hhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEe
Q 036753 579 LNFLQQCGIRGLGGVSDA-GEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGID 657 (725)
Q Consensus 579 L~~L~~L~i~~~~~~~~~-~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 657 (725)
+++|+.+.+......... .......+.++.+|+.+.|.. .+... -..++..+++|+.+.|.
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I-----------------~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL-----------------GQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE-----------------CTTTTTTCCSCCEEEEC
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE-----------------hhhhhcCCCCccEEEEC
Confidence 566666665442111000 011123456677777777652 21110 01355667777777774
Q ss_pred eecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCcc-ccceeecc
Q 036753 658 EYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLK-SLESLLIY 706 (725)
Q Consensus 658 ~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp-~L~~L~L~ 706 (725)
.+ ... +.+..|.++ +|+.|.+.++ ....++. +..+| +++.|.+-
T Consensus 332 ~~-l~~--I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 332 AN-VTQ--INFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TT-CCE--ECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred cc-ccE--EcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeC
Confidence 43 333 435566667 7777777776 3333433 44554 55566554
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=4.4e-07 Score=94.90 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCCCcccccccCCCCcccccEEEecc-CCccccccchhHHhhcCCcceEEEeccccCCCcccccccc-ccccccCccccE
Q 036753 408 RGASVPISIWGNVTGLRGLRSLLVKS-DEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEI-PTNIEKLLHLKY 485 (725)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~l~~Lr~ 485 (725)
....+|. + ..+++|+.|++++ |.+... .+..|.++++|++|+|+ +|. +..+ |..+++|++|++
T Consensus 20 ~l~~ip~-l----~~~~~L~~L~l~~~n~l~~~---~~~~~~~l~~L~~L~l~------~N~-l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 20 ALDSLHH-L----PGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIV------KSG-LRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CCTTTTT-S----CSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECC------SSC-CCEECTTGGGSCSCCCE
T ss_pred CCCccCC-C----CCCCCeeEEEccCCCCCCCc---ChhHhccccCCCEEECC------CCc-cceeCHHHhcCCcCCCE
Confidence 4444554 3 3888999999996 876543 45668999999999999 888 6665 456899999999
Q ss_pred EEeecCCCccccchhhhcCCCCcEeecCCCc
Q 036753 486 LNLKGQKKIENLPETLCELYNLECLNVDDCQ 516 (725)
Q Consensus 486 L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~ 516 (725)
|+|++|. +..+|..+.....|+.|+|.+|.
T Consensus 85 L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 85 LNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp EECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred EeCCCCc-cceeCHHHcccCCceEEEeeCCC
Confidence 9999998 88888766555559999999987
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=9e-08 Score=99.98 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=47.8
Q ss_pred cCCCCCceEEeCcCCCCChhhhhhhccccccccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEe
Q 036753 578 KLNFLQQCGIRGLGGVSDAGEAARAELEKKKYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGID 657 (725)
Q Consensus 578 ~L~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 657 (725)
.+++|+.|.+..+.........+ +....+++|+.|+|+.|.+++. ....+...+.++++|+.|+|+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~LdLs~n~L~d~-------------G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMDISAGVLTDE-------------GARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEECCSSCCBHH-------------HHHHHHTTHHHHTTCSEEECC
T ss_pred CCCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEECCCCCCChH-------------HHHHHHhhcccCCcceEEECC
Confidence 35677777776643211111111 1123467888888887764211 112344444567888888888
Q ss_pred eecCCCCCcccccccCccc-c-ceeEEcCCC
Q 036753 658 EYRGRRNVVPKNWFMSLTN-L-RDLSLFWWS 686 (725)
Q Consensus 658 ~~~~~~~~~~p~~l~~l~~-L-~~L~L~~c~ 686 (725)
+|.+.. .....+.. | ..++++++.
T Consensus 316 ~n~i~d-----~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 316 YNYLSD-----EMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp SBBCCH-----HHHHHHHHHCCSEEECCSBC
T ss_pred CCcCCH-----HHHHHHHHHcCCEEEecCCc
Confidence 776432 22333332 3 556676654
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=8.6e-08 Score=100.95 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=68.2
Q ss_pred cccccEEEeccCCccccc-cchhHHhh-cCCcceEEEeccccCCCccccccc-cccc-cccCccccEEEeecCCCccccc
Q 036753 423 LRGLRSLLVKSDEYSWSS-EGLPQLFE-KLTCLRALELQVRESWPRNSLIKE-IPTN-IEKLLHLKYLNLKGQKKIENLP 498 (725)
Q Consensus 423 ~~~L~~L~l~~~~~~~~~-~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~~~-lp~~-i~~l~~Lr~L~L~~~~~i~~lp 498 (725)
+++|+.|.+++|.++... ..+...+. ..++|+.|+|+ +|. +.. -... ...+.+|++|+|++|. ++..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls------~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA------SCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT------TCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec------CCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHH
Confidence 466788888888764321 01222232 23688888888 776 432 1222 2345678888988887 54322
Q ss_pred -hhh-----hcCCCCcEeecCCCcccc-----cccccccCCCcCcEEecCCCc
Q 036753 499 -ETL-----CELYNLECLNVDDCQNLR-----ELPRGIGKLRKLMYLHNEDTG 540 (725)
Q Consensus 499 -~~i-----~~L~~L~~L~l~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 540 (725)
..+ ...++|++|+|++|. +. .++..+..+++|++|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 222 245788888888887 43 255556778888888888884
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=2.2e-07 Score=96.96 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=48.1
Q ss_pred CcccccEEEeccCCc-----ccc-ccchhHHhhcCCcceEEEeccccCCCccccccccccccccCccccEEEeecCCCcc
Q 036753 422 GLRGLRSLLVKSDEY-----SWS-SEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLLHLKYLNLKGQKKIE 495 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~-----~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~ 495 (725)
.+++|++|.+.+... ++. ...+...+..+++|+.|+|+ ++. -..+|. +. +++|+.|+|..|. +.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~------g~~-~l~l~~-~~-~~~L~~L~L~~~~-l~ 206 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK------GTN-NLSIGK-KP-RPNLKSLEIISGG-LP 206 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEE------CCB-TCBCCS-CB-CTTCSEEEEECSB-CC
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEe------CCC-Cceecc-cc-CCCCcEEEEecCC-CC
Confidence 677888888765422 111 11255666777888888887 542 123333 33 6778888887766 32
Q ss_pred -ccchhhh--cCCCCcEeecC
Q 036753 496 -NLPETLC--ELYNLECLNVD 513 (725)
Q Consensus 496 -~lp~~i~--~L~~L~~L~l~ 513 (725)
.....++ ++++|++|+|+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEE
T ss_pred hHHHHHHHHccCCCCcEEEEe
Confidence 2222333 67778888775
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=4e-08 Score=103.47 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=62.3
Q ss_pred CCcceEEEeccccCCCccccccc-cccccc-----cCccccEEEeecCCCccc--cchhhhcCCCCcEeecCCCccccc-
Q 036753 450 LTCLRALELQVRESWPRNSLIKE-IPTNIE-----KLLHLKYLNLKGQKKIEN--LPETLCELYNLECLNVDDCQNLRE- 520 (725)
Q Consensus 450 l~~Lr~L~L~~~~~~~~~~~~~~-lp~~i~-----~l~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~- 520 (725)
++.|+.|+|+ +|. +.. ....+. ...+|++|+|++|. +.. +..-...+.+|++|+|++|. +..
T Consensus 71 ~~~L~~L~Ls------~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLA------GVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPE 141 (372)
T ss_dssp HTTCCEEECT------TSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHH
T ss_pred HhhCCEEEec------CCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHH
Confidence 4678899998 777 433 122222 23689999999998 543 22223456788999999987 432
Q ss_pred ----ccccc-cCCCcCcEEecCCCcccc----cCCcccCCCccCcccCeEEE
Q 036753 521 ----LPRGI-GKLRKLMYLHNEDTGCLR----YLPAGIGELIRLRRVREFVV 563 (725)
Q Consensus 521 ----lp~~i-~~L~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~~~~~ 563 (725)
+...+ ...++|++|++++|.... .++..+..+++|++|++.++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 22222 245788999998884211 12333344555555554433
No 154
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.92 E-value=9.6e-06 Score=86.81 Aligned_cols=85 Identities=22% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCccccchhhHHHHHHHH-hcCCCC--CCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcc-----cc-ceeeeecCCCc
Q 036753 177 VSEIFGRPKEKKELVDRL-LCEGSK--EQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKH-----FD-ERIWVCVSEPF 247 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L-~~~~~~--~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~vs~~~ 247 (725)
++.++||+.+++++.+.| ...... .....-+|+|+|++|+||||||+.+++. .... |+ ..+|+......
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCC
Confidence 367999999999999998 431110 0113344444999999999999999984 3322 23 24677766777
Q ss_pred cHHHHHHHHHHHhcCC
Q 036753 248 DEFRIARAVIEALKSG 263 (725)
Q Consensus 248 ~~~~l~~~i~~~l~~~ 263 (725)
+...+++.++.++...
T Consensus 99 ~~~~~~~~l~~~l~~~ 114 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYP 114 (412)
T ss_dssp SHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHhCCC
Confidence 8889999999988654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=3.3e-06 Score=77.36 Aligned_cols=89 Identities=9% Similarity=0.110 Sum_probs=66.2
Q ss_pred cccCcEEEEecCCCCCCcccccCCCCCchhHHHHhhhcCCCCCCCcEEEeeecCCCCCcccccccCc----cccceeEEc
Q 036753 608 KYLLKLGLHFDRIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKNLGIDEYRGRRNVVPKNWFMSL----TNLRDLSLF 683 (725)
Q Consensus 608 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l----~~L~~L~L~ 683 (725)
.+|+.|+++++.+++ ..+..+..+++|++|+|++|...++.- -..+..+ ++|++|+|+
T Consensus 61 ~~L~~LDLs~~~Itd-----------------~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-----------------IGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEII 122 (176)
T ss_dssp CCEEEEEEESCCCCG-----------------GGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEE
T ss_pred ceEeEEeCcCCCccH-----------------HHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcC
Confidence 479999999988433 234566789999999999997655111 1223333 479999999
Q ss_pred CCCCCCc--CCCCCCccccceeecccccCceEe
Q 036753 684 WWSNCEH--LPPLGKLKSLESLLIYGMQSVKRV 714 (725)
Q Consensus 684 ~c~~~~~--lp~l~~lp~L~~L~L~~~~~l~~i 714 (725)
+|..+++ +..+..+|+|++|+|++|+.++..
T Consensus 123 ~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 123 SCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp SCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 9987774 444778999999999999988753
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=8.3e-06 Score=80.60 Aligned_cols=79 Identities=25% Similarity=0.317 Sum_probs=49.5
Q ss_pred hcCCcceEEEeccccCCCccccccc---cccccccCccccEEEeecCCCccccchhhhcCC--CCcEeecCCCccccccc
Q 036753 448 EKLTCLRALELQVRESWPRNSLIKE---IPTNIEKLLHLKYLNLKGQKKIENLPETLCELY--NLECLNVDDCQNLRELP 522 (725)
Q Consensus 448 ~~l~~Lr~L~L~~~~~~~~~~~~~~---lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp 522 (725)
.++++|+.|+|+ +|. +.. +|..++.+++|++|+|++|. +..+. .+..+. +|++|+|++|.....+|
T Consensus 167 ~~l~~L~~L~Ls------~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLS------NNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECT------TSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECC------CCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 567777777777 666 443 33455677777777777777 66552 344444 77777777777434444
Q ss_pred c-------cccCCCcCcEEe
Q 036753 523 R-------GIGKLRKLMYLH 535 (725)
Q Consensus 523 ~-------~i~~L~~L~~L~ 535 (725)
. .+..+++|+.|+
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 2 245666666665
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=7.6e-06 Score=74.92 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=40.3
Q ss_pred ccccccccCccccEEEeecCCCccc-cchhhhcCCCCcEeecCCCcccccc-cccccCC----CcCcEEecCCCc
Q 036753 472 EIPTNIEKLLHLKYLNLKGQKKIEN-LPETLCELYNLECLNVDDCQNLREL-PRGIGKL----RKLMYLHNEDTG 540 (725)
Q Consensus 472 ~lp~~i~~l~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L----~~L~~L~l~~~~ 540 (725)
.+|.....-.+|++||+++|. ++. =-..+.++++|++|+|++|..++.- -..+..+ ++|++|++++|.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 355433233468888888887 543 2244677888888888888654421 1123332 257777777764
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=3.2e-05 Score=72.47 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=70.2
Q ss_pred CCcccccEEEeccC-Ccccc-ccchhHHhhcCCcceEEEeccccCCCccccccc-----cccccccCccccEEEeecCCC
Q 036753 421 TGLRGLRSLLVKSD-EYSWS-SEGLPQLFEKLTCLRALELQVRESWPRNSLIKE-----IPTNIEKLLHLKYLNLKGQKK 493 (725)
Q Consensus 421 ~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~-----lp~~i~~l~~Lr~L~L~~~~~ 493 (725)
...++|++|.+++| .+... ...+...+...+.|++|+|+ +|. +.. +...+...++|++|+|++|.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls------~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~- 104 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV------GTR-SNDPVAFALAEMLKVNNTLKSLNVESNF- 104 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT------TSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc------CCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-
Confidence 36777888888877 65321 01144456667788888887 666 332 33445555678888888887
Q ss_pred ccc-----cchhhhcCCCCcEeec--CCCccccc-----ccccccCCCcCcEEecCCC
Q 036753 494 IEN-----LPETLCELYNLECLNV--DDCQNLRE-----LPRGIGKLRKLMYLHNEDT 539 (725)
Q Consensus 494 i~~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 539 (725)
+.. +...+...++|++|+| ++|. +.. +...+...++|++|++++|
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 553 4566677777888888 6666 332 3444555677888888777
No 159
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=6.6e-05 Score=79.39 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=59.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcc--------ccceeeeecCCCc-c
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKH--------FDERIWVCVSEPF-D 248 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~~-~ 248 (725)
++++||+.+++++..++..... ....+.|.|+|.+|+||||||+.+++. .... ....+|+..+... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCC
Confidence 6799999999999988865211 124568999999999999999999984 3222 2234566666655 7
Q ss_pred HHHHHHHHHHHhcC
Q 036753 249 EFRIARAVIEALKS 262 (725)
Q Consensus 249 ~~~l~~~i~~~l~~ 262 (725)
...+...++.++.+
T Consensus 96 ~~~~~~~l~~~l~~ 109 (384)
T 2qby_B 96 PQAVLSSLAGKLTG 109 (384)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 78888888887744
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.54 E-value=5.1e-05 Score=80.17 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=57.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhcccc---ceeeeecCCCccHHHHH
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFD---ERIWVCVSEPFDEFRIA 253 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~l~ 253 (725)
++.++||+.+++.+.+++..... ......+.|+|.+|+||||||+.+.+ .....|. ..+|+..+...+...+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998864211 12456889999999999999999998 3444432 34566555555666666
Q ss_pred HHHHHHh
Q 036753 254 RAVIEAL 260 (725)
Q Consensus 254 ~~i~~~l 260 (725)
..++.++
T Consensus 95 ~~i~~~l 101 (386)
T 2qby_A 95 ADLLESL 101 (386)
T ss_dssp HHHTTTT
T ss_pred HHHHHHh
Confidence 6665554
No 161
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.51 E-value=0.00016 Score=76.57 Aligned_cols=83 Identities=14% Similarity=0.006 Sum_probs=60.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc-cceeeeecCCCccHHHHHHHH
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF-DERIWVCVSEPFDEFRIARAV 256 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~l~~~i 256 (725)
+.++||+.+++++..++........+..+.+.|+|..|+||||||+.+.+. ..... -..+++..+...+...+.+.+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999987521101123348999999999999999999873 33321 234566666777788888888
Q ss_pred HHHhcC
Q 036753 257 IEALKS 262 (725)
Q Consensus 257 ~~~l~~ 262 (725)
+..+..
T Consensus 95 ~~~l~~ 100 (389)
T 1fnn_A 95 ARSLNI 100 (389)
T ss_dssp HHHTTC
T ss_pred HHHhCc
Confidence 887754
No 162
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.47 E-value=0.00015 Score=76.48 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=61.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc------cceeeeecCCCccHHH
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF------DERIWVCVSEPFDEFR 251 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~ 251 (725)
+.++||+.+++++..++..... ......+.|+|.+|+||||||+.+.+. ....+ -..+|+......+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 6799999999999998854311 124567889999999999999999984 32221 2345676667778888
Q ss_pred HHHHHHHHhcCC
Q 036753 252 IARAVIEALKSG 263 (725)
Q Consensus 252 l~~~i~~~l~~~ 263 (725)
+...++.++...
T Consensus 95 ~~~~l~~~l~~~ 106 (387)
T 2v1u_A 95 VASAIAEAVGVR 106 (387)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhCCC
Confidence 888888888553
No 163
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.45 E-value=0.00011 Score=76.46 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=51.5
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCc------cH
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPF------DE 249 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 249 (725)
..+.++||+.+.+++.+++.. + +++.|+|++|+|||||++.+.+. . . .+|+...... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 345799999999999999853 1 58999999999999999999873 2 2 5666554332 45
Q ss_pred HHHHHHHHHHh
Q 036753 250 FRIARAVIEAL 260 (725)
Q Consensus 250 ~~l~~~i~~~l 260 (725)
..+.+.+...+
T Consensus 75 ~~~~~~l~~~l 85 (350)
T 2qen_A 75 EELIKELQSTI 85 (350)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 56666665554
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.40 E-value=5.3e-05 Score=70.93 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=67.3
Q ss_pred hhHHhhcCCcceEEEeccccCCCcc-cccc-----ccccccccCccccEEEeecCCCccc-----cchhhhcCCCCcEee
Q 036753 443 LPQLFEKLTCLRALELQVRESWPRN-SLIK-----EIPTNIEKLLHLKYLNLKGQKKIEN-----LPETLCELYNLECLN 511 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~~~-~~~~-----~lp~~i~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~ 511 (725)
+...+...+.|+.|+|+ +| . +. .+...+...++|++|+|++|. +.. +...+...++|++|+
T Consensus 28 l~~~l~~~~~L~~L~L~------~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLN------NIMN-IPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp HHHHHTTCTTCCEEECT------TCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHhcCCCCCEEEec------CCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEE
Confidence 55567888999999999 77 5 33 245556777889999999998 553 556677778999999
Q ss_pred cCCCccccc-----ccccccCCCcCcEEec--CCC
Q 036753 512 VDDCQNLRE-----LPRGIGKLRKLMYLHN--EDT 539 (725)
Q Consensus 512 l~~~~~l~~-----lp~~i~~L~~L~~L~l--~~~ 539 (725)
|++|. +.. +...+...++|++|++ ++|
T Consensus 100 L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 100 VESNF-ISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp CCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred CcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 99998 443 5666777888999999 666
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.34 E-value=0.00031 Score=73.13 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=50.0
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCC-----ccHH
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEP-----FDEF 250 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 250 (725)
..+.+|||+.+.+.+.+ +. . +++.|+|++|+|||||++.+.+. ... ..+|+..... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~--------~-~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR--------A-PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC--------S-SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc--------C-CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 34579999999999998 63 1 59999999999999999999874 322 2467766532 2445
Q ss_pred HHHHHHHHHh
Q 036753 251 RIARAVIEAL 260 (725)
Q Consensus 251 ~l~~~i~~~l 260 (725)
.+...+.+.+
T Consensus 76 ~~~~~l~~~l 85 (357)
T 2fna_A 76 DFLLELQKEI 85 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.32 E-value=0.00026 Score=69.84 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=65.0
Q ss_pred CcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccccccccCc--cccEEEeecCCCccccc-
Q 036753 422 GLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIPTNIEKLL--HLKYLNLKGQKKIENLP- 498 (725)
Q Consensus 422 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~l~--~Lr~L~L~~~~~i~~lp- 498 (725)
++++|++|++++|.+..+.. +|..+..+++|+.|+|+ +|. +..+ ..+..+. +|++|+|++|.....+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls------~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLS------GNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECT------TSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECC------CCc-cCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence 68899999999999876544 66778899999999999 888 6665 3355555 99999999999444455
Q ss_pred ------hhhhcCCCCcEeec
Q 036753 499 ------ETLCELYNLECLNV 512 (725)
Q Consensus 499 ------~~i~~L~~L~~L~l 512 (725)
..+..+++|+.||-
T Consensus 239 ~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESS
T ss_pred chhHHHHHHHHCcccCeECC
Confidence 24688999999984
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.28 E-value=0.0016 Score=68.85 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=28.8
Q ss_pred cCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeecc
Q 036753 645 LGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIY 706 (725)
Q Consensus 645 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~ 706 (725)
+..+.+|+.+.|... ... +....|.++.+|+.+.|..+ +..++. +..+++|+.+.+.
T Consensus 316 F~~c~~L~~i~lp~~-v~~--I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEE--IGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCTT-CCE--ECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred hcCCCCCCEEEeCCc-ccE--EhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 444555665555322 222 32444555566666665433 444443 5556666666664
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.16 E-value=0.0032 Score=66.52 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=38.1
Q ss_pred hcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeecccc
Q 036753 644 ALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGM 708 (725)
Q Consensus 644 ~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~ 708 (725)
.+..+.+|+.+.|..+ ... +....|.++.+|+.+.|..+ ++.+.. +..+++|+.+.+.+.
T Consensus 306 aF~~c~~L~~i~lp~~-v~~--I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQ--ILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred eecCCCCcCEEEeCCc-ccE--ehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 4556777777777543 222 33455667777888877543 555554 677777887777654
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00037 Score=65.23 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.++|+++.++++.+.+... ....+-|+|..|+||||||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998653 3455789999999999999999873
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.02 E-value=0.0013 Score=69.62 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=35.0
Q ss_pred cCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeecccccCceEeCccccC
Q 036753 645 LGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQSVKRVGNELSE 720 (725)
Q Consensus 645 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~~l~~i~~~~~~ 720 (725)
+..+.+|+.+.+..+ ... +....|.++++|+.+.|.++ ++.++. +..+.+|+.+.+.. +++.|+...|.
T Consensus 293 F~~~~~L~~i~l~~~-i~~--I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~ 363 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKF--IGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQ 363 (394)
T ss_dssp TTTCTTCCEEEECTT-CCE--ECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTBT
T ss_pred ccccccccccccccc-cce--echhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc--cccEehHHHhh
Confidence 344556666666432 222 32344555666666666432 444443 55566666666642 25555555443
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.01 E-value=0.0015 Score=62.52 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=38.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..+++|++..++++.+++... ....+-|+|.+|+||||||+.+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999654 2233889999999999999999873
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.00055 Score=63.70 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++++|++..++.+.+.+... ....|-|+|..|+||||||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999643 3445679999999999999999873
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.89 E-value=0.00072 Score=65.90 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++++|++..++.+..++.... ...++.|+|.+|+||||||+.+.+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997542 2358889999999999999999873
No 174
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.001 Score=67.27 Aligned_cols=81 Identities=6% Similarity=-0.084 Sum_probs=57.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccc-----cc--eeeeecCCCccHHH
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF-----DE--RIWVCVSEPFDEFR 251 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-----~~--~~wv~vs~~~~~~~ 251 (725)
.+.||+++.++|...|...-. .+....+-|+|.+|.|||++|+.|.+. ..... .. .+.|......+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHH
Confidence 489999999999988865321 235677889999999999999999984 33211 12 23344345567788
Q ss_pred HHHHHHHHhcCC
Q 036753 252 IARAVIEALKSG 263 (725)
Q Consensus 252 l~~~i~~~l~~~ 263 (725)
+...|++++.+.
T Consensus 97 ~~~~I~~~L~g~ 108 (318)
T 3te6_A 97 LYEKIWFAISKE 108 (318)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhcCC
Confidence 999999999765
No 175
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.62 E-value=0.024 Score=59.31 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=56.0
Q ss_pred hcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeecccccCceEeCccccCC
Q 036753 644 ALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQSVKRVGNELSEV 721 (725)
Q Consensus 644 ~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~~l~~i~~~~~~~ 721 (725)
.+..+++|+.+.+.++.... +....|.++.+|+.+.|..+ ++.++. +..+.+|+.+.+- .+++.|+...|.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip--~~v~~I~~~aF~~ 354 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP--KSITLIESGAFEG 354 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC--TTCCEECTTTTTT
T ss_pred ccccccccccccccccccce--ehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC--CccCEEchhHhhC
Confidence 56678899999998776655 54667778899999999654 666665 7888999999885 3488898877765
Q ss_pred C
Q 036753 722 R 722 (725)
Q Consensus 722 ~ 722 (725)
.
T Consensus 355 c 355 (379)
T 4h09_A 355 S 355 (379)
T ss_dssp S
T ss_pred C
Confidence 3
No 176
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.36 E-value=0.0021 Score=57.12 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=35.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+++|....+.++.+.+..-.. .... |-|+|-.|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~~~-vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCC-EEEECCCCCCHHHHHHHHHHh
Confidence 579999999999988864321 1233 569999999999999999874
No 177
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.004 Score=63.68 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++++|++..++.+.+++... ....+-|+|.+|+||||+|+.+.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999998653 2333889999999999999999873
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.13 E-value=0.004 Score=62.46 Aligned_cols=53 Identities=26% Similarity=0.230 Sum_probs=39.2
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGSK-------EQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.-++++|.+..+++|.+.+...... +-....-+-|+|.+|+||||||+.+.+
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 33467999999999998887432000 012345688999999999999999987
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.09 E-value=0.0046 Score=61.06 Aligned_cols=52 Identities=25% Similarity=0.208 Sum_probs=36.6
Q ss_pred cCCccccchhhHHHHHHHHhc---CCC---CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 176 DVSEIFGRPKEKKELVDRLLC---EGS---KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~---~~~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-++++|.+..++.+.+++.. ... .+....+-|-|+|..|+||||+|+.+.+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999888887766532 110 0112345577999999999999999987
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.05 E-value=0.0042 Score=58.70 Aligned_cols=61 Identities=20% Similarity=0.027 Sum_probs=37.3
Q ss_pred ccccchh----hHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeec
Q 036753 179 EIFGRPK----EKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCV 243 (725)
Q Consensus 179 ~~vG~~~----~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (725)
++++.+. .++.+..++..... ......|-|+|.+|+||||||+.+++. ........+|++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 4555443 34445555543321 112267889999999999999999984 4343444556543
No 181
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.0059 Score=62.47 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++++|++..++.+..++... ....+-++|..|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999998654 3334889999999999999999873
No 182
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.92 E-value=0.0025 Score=56.53 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=33.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+++|.+..++++.+.+..-.. ... -|-|+|..|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~~-~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RTS-PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CSS-CEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCC-cEEEECCCCccHHHHHHHHHHh
Confidence 589999999988888764221 122 3569999999999999999874
No 183
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.85 E-value=0.23 Score=51.74 Aligned_cols=72 Identities=19% Similarity=0.100 Sum_probs=53.9
Q ss_pred hcCCCCCCCcEEEeeecCCCCCcccccccCccccceeEEcCCCCCCcCCC--CCCccccceeecccccCceEeCccccCC
Q 036753 644 ALGPPPNLKNLGIDEYRGRRNVVPKNWFMSLTNLRDLSLFWWSNCEHLPP--LGKLKSLESLLIYGMQSVKRVGNELSEV 721 (725)
Q Consensus 644 ~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~lp~L~~L~L~~~~~l~~i~~~~~~~ 721 (725)
.+..+.+|+.+.+... ... ++...+.++++|+.+.+.++ .++.++. +..+.+|+.+.|-. +++.|+...|.+
T Consensus 258 aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~ 331 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKN 331 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred ccceeehhcccccccc-cee--cccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhC
Confidence 5566788999988654 233 43556678899999999876 5666765 88899999999953 488998877654
No 184
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.78 E-value=0.0099 Score=56.07 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 183 RPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 183 ~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456677777776532 23568999999999999999998876
No 185
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.77 E-value=0.0089 Score=60.46 Aligned_cols=54 Identities=24% Similarity=0.175 Sum_probs=39.4
Q ss_pred ccCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~-------~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.-++++|.+..++++.+.+...-. .+-...+.|.++|..|+||||||+++.+.
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3345799999999988887753100 00124567889999999999999999873
No 186
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.75 E-value=0.0049 Score=63.56 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=38.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++++|++..++++..++..... .......|-|+|..|+||||||+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999988865311 012345578999999999999999976
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.63 E-value=0.011 Score=60.02 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 179 EIFGRPKEKKELVDRLLCEG---------SKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~---------~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+++|.+..++.|.+++.... -........|-|+|..|+||||||+.+.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 48999988888877664210 001224556889999999999999988773
No 188
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.58 E-value=0.018 Score=55.69 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=35.7
Q ss_pred Cccccch---hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecC
Q 036753 178 SEIFGRP---KEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVS 244 (725)
Q Consensus 178 ~~~vG~~---~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (725)
++++|.+ ..++.+..+.... ....+-|+|..|+||||||+.+.+. .........|+..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 4566632 4445555544321 3467889999999999999999873 33222334455443
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.58 E-value=0.013 Score=59.75 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=39.3
Q ss_pred ccCCccccchhhHHHHHHHHhcC---C---CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCE---G---SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~---~---~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.-++++|.+..++.|.+.+... . .......+-|-++|..|+|||+||+++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34567999999999998887310 0 00122345688999999999999999987
No 190
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.55 E-value=0.15 Score=53.59 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=62.1
Q ss_pred CCCcccccEEEeccCCccccccchhHHhhcCCcceEEEeccccCCCccccccccc-cccccCccccEEEeecCCCccccc
Q 036753 420 VTGLRGLRSLLVKSDEYSWSSEGLPQLFEKLTCLRALELQVRESWPRNSLIKEIP-TNIEKLLHLKYLNLKGQKKIENLP 498 (725)
Q Consensus 420 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp 498 (725)
+.++++|+.+.+..+........-...|.++..|+.+.+. . . +..++ ..+..+.+|+.+.+..+ +..++
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~------~-~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~ 152 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL------D-S-VTEIDSEAFHHCEELDTVTIPEG--VTSVA 152 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG------T-T-CSEECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC------C-c-cceehhhhhhhhcccccccccce--eeeec
Confidence 3488999999887653211111113347777777776654 2 2 34443 33567778888888654 34444
Q ss_pred -hhhhcCCCCcEeecCCCcccccccccccCCCcCcEEecCC
Q 036753 499 -ETLCELYNLECLNVDDCQNLRELPRGIGKLRKLMYLHNED 538 (725)
Q Consensus 499 -~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 538 (725)
..+.++.+|+.+.+.++ +..+....-.-.+|..+.+..
T Consensus 153 ~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred ccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 35667778888877653 444444333335566666543
No 191
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.54 E-value=0.0092 Score=64.41 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.+||++.+++.++..|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997532 22346999999999999999987
No 192
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.52 E-value=0.0041 Score=63.71 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=37.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++++|++..++.+..++..... .......|-|+|..|+||||||+.+.+
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 35699999999998888753210 011335678999999999999999987
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.49 E-value=0.012 Score=59.25 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=38.5
Q ss_pred cCCccccchhhHHHHHHHHhcCC------CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEG------SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~------~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-++++|.+..++.+.+.+.... .......+.|-|+|..|+||||+|+.+.+
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34579999999999988874310 00011346788999999999999999987
No 194
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.49 E-value=0.01 Score=61.93 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|++..++.+...+.... ....+-|+|..|+||||+|+.+.+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 459999999999999996542 235778999999999999999876
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.43 E-value=0.0092 Score=55.12 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-..+.|+|..|+||||||+.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999984
No 196
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.41 E-value=0.012 Score=55.76 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|..|.|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999876
No 197
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.39 E-value=0.0094 Score=61.74 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=37.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-++++|.+..++.+..++.... ...+-++|..|+||||+|+.+.+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999986432 223789999999999999999874
No 198
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.37 E-value=0.011 Score=61.40 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=38.7
Q ss_pred cCCccccchhhHHHHHHHHhcC---CC---CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 176 DVSEIFGRPKEKKELVDRLLCE---GS---KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~---~~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-++++|.+..+++|.+.+... .. ......+-|-|+|..|+||||||+++.+
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999998887521 00 0012356788999999999999999987
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.26 E-value=0.02 Score=58.39 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=39.3
Q ss_pred ccCCccccchhhHHHHHHHHhcC---C---CCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCE---G---SKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~---~---~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.-++++|.+..++.|.+.+... . .......+-|-++|..|+|||+||+++.+.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 44567999999999888876321 0 001123467889999999999999999873
No 200
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.26 E-value=0.012 Score=57.86 Aligned_cols=52 Identities=25% Similarity=0.278 Sum_probs=35.3
Q ss_pred cCCccccchhhHHHHHHHHhc---CCC---CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 176 DVSEIFGRPKEKKELVDRLLC---EGS---KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~---~~~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-++++|.+..++++.+++.. ... .+....+-|.|+|..|+||||||+.+.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 345799999888877665432 100 0011233478999999999999999987
No 201
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.25 E-value=0.011 Score=60.12 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=37.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.++++|++..++.+.+++... ....+-++|..|+||||+|+.+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHH
Confidence 346999999999988887543 3333789999999999999999873
No 202
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.15 E-value=0.018 Score=59.98 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=35.7
Q ss_pred CCccccchhhHHH---HHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKE---LVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+++||.+..++. +...+.... ...+.+-|+|..|+||||+|+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999988776 444444322 12367889999999999999999873
No 203
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.14 E-value=0.018 Score=63.04 Aligned_cols=52 Identities=23% Similarity=0.199 Sum_probs=40.1
Q ss_pred CCccccchhhHHHHHHHHhcCC---------C--CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEG---------S--KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~---------~--~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.++++|++..++++.+++.... . .+.+..+.+-|+|..|+||||+|+.+.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999996511 0 00123468899999999999999999873
No 204
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.09 E-value=0.01 Score=54.33 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.7
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 036753 206 CIISLVGMGGIGKTTLAQFA 225 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v 225 (725)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 205
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.05 E-value=0.019 Score=58.51 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=34.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 181 FGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 181 vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
|+.+.-++++++.+...-. .+....|.|+|+.|+||||+|+.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 5556667777777754321 23567799999999999999999987
No 206
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.95 E-value=0.013 Score=54.56 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|+.|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 447899999999999999999976
No 207
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.93 E-value=0.019 Score=57.49 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 208
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.91 E-value=0.014 Score=57.66 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=33.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.++|.+..+.++.+.+..-.. .-.-|-|+|..|+|||++|+.+.+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4589999999998887764321 1234669999999999999999874
No 209
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.89 E-value=0.0098 Score=61.14 Aligned_cols=49 Identities=31% Similarity=0.313 Sum_probs=35.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.+..++.+-..+..... .+.....+.++|..|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4578887777776665543200 112456789999999999999999987
No 210
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.83 E-value=0.017 Score=61.66 Aligned_cols=44 Identities=27% Similarity=0.264 Sum_probs=35.6
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEK---KELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~---~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+++||.+..+ ..+...+... .+..+-+||..|+||||||+.+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHH
Confidence 4688988777 6677777543 456788999999999999999987
No 211
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.73 E-value=0.015 Score=60.27 Aligned_cols=44 Identities=16% Similarity=0.023 Sum_probs=34.4
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRL-LCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L-~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.+..++.+..++ ... ....+.|+|..|+||||+|+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~------~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR------DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT------CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCeEEEECCCCCCHHHHHHHHHH
Confidence 46899998888887777 322 222289999999999999998876
No 212
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.67 E-value=0.015 Score=57.60 Aligned_cols=51 Identities=29% Similarity=0.294 Sum_probs=35.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSK------EQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-++++|.+..++.+.+.+..-... +....+-|-|+|..|+||||||+.+.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 457999998888887766420000 001122366999999999999999987
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.66 E-value=0.016 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++|.|+|+.|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 214
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.65 E-value=0.015 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.126 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 215
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.53 E-value=0.032 Score=57.74 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=38.6
Q ss_pred ccCCccccchhhHHHHHHHHhcC---C---CCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCE---G---SKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~---~---~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.-++++|.+..++.|.+.+... . .......+-|-++|..|+||||||+++.+.
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 33457999999999998877321 0 001122345779999999999999999883
No 216
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.52 E-value=0.019 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|+|||||++..+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 356899999999999999998664
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.48 E-value=0.017 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|-|.|+.|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998876
No 218
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.47 E-value=0.014 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|+|+|+.|+||||||+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.46 E-value=0.023 Score=57.46 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|....+.++.+.+..-.. .-.-|-|+|-.|+|||++|+.+.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 3589999999999988865322 223456999999999999999987
No 220
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.45 E-value=0.023 Score=53.43 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|.|+|+.|.||||||+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999976
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.44 E-value=0.021 Score=57.86 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhcC--CCC------CCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCE--GSK------EQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~--~~~------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.++|.+..++.+...+... ... ......-+-++|..|+||||+|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999998887541 000 001234567999999999999999987
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.43 E-value=0.018 Score=53.12 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-++++|+|..|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.42 E-value=0.039 Score=55.83 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=37.6
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLCEG---SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|.+..++.+...+.... .........+.++|..|+||||+|+.+.+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 47899999888888876531 10122346899999999999999999987
No 224
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.39 E-value=0.021 Score=57.78 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.3
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++.+||+|.|-|||||||.|-.+--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3789999999999999999876654
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.04 Score=57.97 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=40.3
Q ss_pred ccccCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 173 SSIDVSEIFGRPKEKKELVDRLLCEGS-------KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~l~~~L~~~~~-------~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.+.-+++.|.++.+++|.+.+...-. .+-...+=|-++|.+|.|||+||++|.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 334556899999999988876642100 0123456688999999999999999987
No 226
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.34 E-value=0.035 Score=58.31 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=38.9
Q ss_pred ccCCccccchhhHHHHHHHHhcCCC------CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGS------KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~------~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.-++++|.+..++.|.+++..... ......+-|-|+|..|+|||+||+.+.+
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999888732100 0011245788999999999999999976
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.34 E-value=0.029 Score=64.68 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.+||++..+++++..|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997542 22356999999999999999987
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.32 E-value=0.024 Score=66.16 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.++|++.+++.+++.|.... ..-+.++|.+|+||||||+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999996542 233578999999999999999873
No 229
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.32 E-value=0.026 Score=56.04 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=34.2
Q ss_pred ccccchhhHHHHHH-------HHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 179 EIFGRPKEKKELVD-------RLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 179 ~~vG~~~~~~~l~~-------~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.++|....+++++. .+... ......-+-|+|..|+||||||+.+.+.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 57888777776666 33211 1235677889999999999999999873
No 230
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.29 E-value=0.023 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999875
No 231
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.28 E-value=0.027 Score=52.94 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=22.4
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999998865
No 232
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.28 E-value=0.038 Score=54.15 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 185 KEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...++++..+..... ......+|.|+|+.|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555554433 334568999999999999999998865
No 233
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.27 E-value=0.029 Score=53.04 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|+|..|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 234
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.25 E-value=0.023 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999864
No 235
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.25 E-value=0.029 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 236
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.20 E-value=0.042 Score=55.58 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 182 GRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 182 G~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
|-......+...+.... ......+|||.|..|+||||||+.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33344444554454432 234678999999999999999998865
No 237
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.19 E-value=0.036 Score=56.58 Aligned_cols=46 Identities=24% Similarity=0.147 Sum_probs=38.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-++++|.+..++.+.+++.... ...++-+.|..|+||||+|+.+.+
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 3579999999999999997432 346778889999999999999976
No 238
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.048 Score=57.53 Aligned_cols=56 Identities=27% Similarity=0.233 Sum_probs=40.5
Q ss_pred ccccCCccccchhhHHHHHHHHhcC---CC----CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 173 SSIDVSEIFGRPKEKKELVDRLLCE---GS----KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~l~~~L~~~---~~----~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.+.-++|.|.++.+++|.+.+... .. .+-...+=|-++|.+|.|||+||++|.+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3445568999999888887766421 00 01234567889999999999999999873
No 239
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.17 E-value=0.038 Score=59.06 Aligned_cols=53 Identities=23% Similarity=0.210 Sum_probs=39.2
Q ss_pred ccCCccccchhhHHHHHHHHhcC----C-C-CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCE----G-S-KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~----~-~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.-++++|.+..++.|.+.+... . . ......+-|-++|..|+|||+||+++.+
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999998877321 0 0 0112346788999999999999999987
No 240
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.17 E-value=0.028 Score=53.31 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.13 E-value=0.039 Score=54.74 Aligned_cols=52 Identities=25% Similarity=0.200 Sum_probs=33.1
Q ss_pred ccCCccccchhhHHHHHHHHhcCC--------CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEG--------SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~--------~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.-+++.|.++.+++|.+.+...- -.-...-. +.++|..|.||||||+.+..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 345678999988888877543110 00001112 89999999999999999987
No 242
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.07 E-value=0.051 Score=54.26 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 186 EKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++++..+..... ......+|-|.|+.|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555444322 234567899999999999999998865
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.07 E-value=0.024 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999998865
No 244
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.04 Score=57.24 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=39.4
Q ss_pred ccccCCccccchhhHHHHHHHHhcC---CC----CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 173 SSIDVSEIFGRPKEKKELVDRLLCE---GS----KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~l~~~L~~~---~~----~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.+.-++|.|.++.+++|.+.+... .. .+-...+=|-++|.+|.|||+||++|.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3445568999999988887766421 00 0122345677999999999999999987
No 245
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.05 E-value=0.034 Score=56.91 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=35.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.++|.+..++.+...+.... -+-++|..|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH
Confidence 358999999998888886532 367899999999999999976
No 246
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.03 E-value=0.026 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|+.|+||||||+.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 247
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.01 E-value=0.032 Score=54.66 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=34.2
Q ss_pred cCCccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 176 DVSEIFGRPKEKKELVDRLLCEGSK------EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 176 ~~~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-++++|.+..+.++.++...-... +-.-.+=+.|+|..|+||||||+.+.+.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457899987777665544321000 0001112889999999999999999873
No 248
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.01 E-value=0.027 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998865
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.96 E-value=0.025 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.+++|+|..|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.96 E-value=0.04 Score=56.70 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=35.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.+..++.+...+..+ .+..+.++|..|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 45889888888888877643 333388999999999999999877
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.95 E-value=0.042 Score=63.33 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.++|++.+++++++.|... ...-+-++|..|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999654 233456999999999999999987
No 252
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.94 E-value=0.028 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++|+|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 253
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.93 E-value=0.03 Score=54.81 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....+|+|.|..|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998865
No 254
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.047 Score=57.57 Aligned_cols=53 Identities=25% Similarity=0.203 Sum_probs=38.8
Q ss_pred ccCCccccchhhHHHHHHHHhc---CC----CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLC---EG----SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~---~~----~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.-++|.|.++.+++|.+.+.. .. .-+-...+=|-++|.+|.|||+||++|.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4456899999999988776532 00 00123466778999999999999999987
No 255
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.88 E-value=0.027 Score=51.17 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=20.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998865
No 256
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.87 E-value=0.022 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|.|..|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 257
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.87 E-value=0.03 Score=52.84 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 258
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.87 E-value=0.039 Score=51.27 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 259
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.036 Score=58.44 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=40.0
Q ss_pred ccccCCccccchhhHHHHHHHHhc---CCC----CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 173 SSIDVSEIFGRPKEKKELVDRLLC---EGS----KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~l~~~L~~---~~~----~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.+.-++|.|.++.+++|.+.+.. ... .+-...+=|-++|.+|.|||+||++|.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 334456899999999998876532 100 0123456788999999999999999988
No 260
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.78 E-value=0.019 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-..++|+|..|+|||||++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999984
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.77 E-value=0.024 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.76 E-value=0.033 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 263
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.73 E-value=0.047 Score=56.72 Aligned_cols=49 Identities=29% Similarity=0.327 Sum_probs=35.6
Q ss_pred ccccchhhHHHHHHHHhcC-----C----CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLCE-----G----SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~-----~----~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|.+..++.+...+... . .........|-++|..|+||||+|+.+.+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999888877310 0 00111345678999999999999999987
No 264
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.71 E-value=0.033 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.70 E-value=0.034 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.+|+|+|..|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.68 E-value=0.031 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998865
No 267
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.64 E-value=0.044 Score=59.13 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=35.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 179 EIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.++|.+..++.+...+.... -|-++|.+|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 48999999988888876532 4679999999999999999873
No 268
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.046 Score=52.12 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=31.4
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 180 IFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 180 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+-+.++..+++...+... ...+|.|+|.+|+|||||+..+...
T Consensus 11 l~~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445566666655332 6789999999999999999988763
No 269
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.61 E-value=0.044 Score=58.86 Aligned_cols=51 Identities=22% Similarity=0.181 Sum_probs=35.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.++++|.+..++.+..++..-.. +....+-+-++|.+|+||||||+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKS-KKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHh-CCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 35799999888865544432111 1113355779999999999999999873
No 270
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.60 E-value=0.031 Score=51.44 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=20.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++|.|+|+.|+||||+|+.+.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346788999999999999998875
No 271
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.59 E-value=0.067 Score=54.52 Aligned_cols=25 Identities=40% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....+-|+|..|+||||||+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456789999999999999999983
No 272
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.58 E-value=0.038 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|+|+.|+||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.58 E-value=0.032 Score=52.40 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
No 274
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.55 E-value=0.045 Score=59.04 Aligned_cols=51 Identities=27% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSK-------EQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++++|.+..+++|.+++.....+ +.....-|-|+|..|+|||++|+++.+
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 356999999999998887532000 011344578999999999999999977
No 275
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.53 E-value=0.039 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..-.+|+|.|+.|+||||+|+.+-+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998765
No 276
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.51 E-value=0.045 Score=50.62 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|.|+|+.|+||||+|+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 277
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.50 E-value=0.043 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998875
No 278
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.49 E-value=0.049 Score=62.85 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=39.5
Q ss_pred ccCCccccchhhHHHHHHHHhcC----C---CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCE----G---SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~----~---~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.-++++|.+..+++|.+++... . .-.-....-|.|+|..|+||||||+.+.+
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 44567999999999988887530 0 00112345689999999999999999976
No 279
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.47 E-value=0.043 Score=55.44 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.6
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..-.+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3568999999999999999999876
No 280
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.45 E-value=0.035 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 281
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.44 E-value=0.078 Score=56.78 Aligned_cols=54 Identities=26% Similarity=0.256 Sum_probs=36.8
Q ss_pred ccCCccccchhhHHHHHHHHhcCCC------CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGS------KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~------~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.-++++|.++.++++.+.+..-.. -+..-.+-|.++|..|.||||||+.+.+.
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3345799999888877776532100 00111234779999999999999999873
No 282
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.40 E-value=0.031 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|.|+|+.|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999865
No 283
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.40 E-value=0.03 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-++|.|+|+.|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 284
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.1 Score=54.47 Aligned_cols=56 Identities=27% Similarity=0.254 Sum_probs=40.5
Q ss_pred ccccCCccccchhhHHHHHHHHhc---CCC----CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 173 SSIDVSEIFGRPKEKKELVDRLLC---EGS----KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~l~~~L~~---~~~----~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.+.-++|.|.++.+++|.+.+.. ... .+-...+=|-++|.+|.|||+||++|.+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 334556899999998888776642 110 01234567889999999999999999983
No 285
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.36 E-value=0.031 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|+|..|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 286
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.35 E-value=0.046 Score=54.38 Aligned_cols=54 Identities=26% Similarity=0.333 Sum_probs=35.2
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGSK------EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+..++++|.++.++++.++...-... .-.-.+=|.|+|..|+||||||+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 34567999988777766554321000 0001112889999999999999999873
No 287
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.31 E-value=0.042 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999865
No 288
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.31 E-value=0.04 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|+|+|..|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 289
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.31 E-value=0.046 Score=50.95 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|+.|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.30 E-value=0.038 Score=52.22 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999875
No 291
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.30 E-value=0.029 Score=51.18 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 292
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.27 E-value=0.045 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|..|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999976
No 293
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.27 E-value=0.048 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999876
No 294
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.25 E-value=0.031 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 295
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.24 E-value=0.081 Score=50.58 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888763
No 296
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.19 E-value=0.054 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHh
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAY 226 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~ 226 (725)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999999886
No 297
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.18 E-value=0.042 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|+.|+||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999875
No 298
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.18 E-value=0.046 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 299
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.16 E-value=0.052 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|.|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998866
No 300
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.14 E-value=0.049 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|+|+.|+||||+|+.+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 301
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.13 E-value=0.048 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.+.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 302
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.05 E-value=0.11 Score=44.82 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=19.0
Q ss_pred cccEEEeecCCCccccchh-hhcCCCCcEeecCCCc
Q 036753 482 HLKYLNLKGQKKIENLPET-LCELYNLECLNVDDCQ 516 (725)
Q Consensus 482 ~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 516 (725)
+|++|+|++|. ++.+|.. +..+.+|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45666666665 5555542 3455556666655554
No 303
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.03 E-value=0.047 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998866
No 304
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.99 E-value=0.038 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.99 E-value=0.053 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|+|.+|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999986
No 306
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.97 E-value=0.099 Score=52.50 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 307
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.96 E-value=0.069 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998865
No 308
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.95 E-value=0.14 Score=58.36 Aligned_cols=56 Identities=25% Similarity=0.250 Sum_probs=40.6
Q ss_pred ccccCCccccchhhHHHHHHHHhc---CCC----CCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 173 SSIDVSEIFGRPKEKKELVDRLLC---EGS----KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 173 ~~~~~~~~vG~~~~~~~l~~~L~~---~~~----~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+.+.-++|.|.++.+++|.+++.. ... -+-...+=|-++|.+|.|||+||++|.+.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344556799999988888777532 110 02234567889999999999999999984
No 309
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.90 E-value=0.051 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 310
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.87 E-value=0.11 Score=52.51 Aligned_cols=25 Identities=40% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....+|+|+|.+|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998876
No 311
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.87 E-value=0.061 Score=49.39 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 312
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.85 E-value=0.04 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.85 E-value=0.035 Score=52.65 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.84 E-value=0.1 Score=53.88 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 187 KKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++.+.+.... +...+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 445555554332 3688999999999999999998865
No 315
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.78 E-value=0.1 Score=49.49 Aligned_cols=45 Identities=22% Similarity=0.103 Sum_probs=32.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIA 253 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 253 (725)
.-.++.|+|.+|+||||||+.+.. ..=..++|+.....++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH
Confidence 446899999999999999999876 112356677766555555544
No 316
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.67 E-value=0.059 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 317
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.66 E-value=0.057 Score=57.63 Aligned_cols=30 Identities=30% Similarity=0.159 Sum_probs=24.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhcccc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFD 236 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~ 236 (725)
...+.|+|..|+||||||+.+.+ .+...|.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~ 159 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEP 159 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCC
Confidence 56788999999999999999998 4544443
No 318
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.66 E-value=0.07 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..+.+-++|.+|+|||+||+.+.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999883
No 319
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.65 E-value=0.049 Score=50.55 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999874
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.65 E-value=0.067 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998865
No 321
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.63 E-value=0.11 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.4
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....+|.|+|.+|+||||++..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3568999999999999999998876
No 322
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.62 E-value=0.055 Score=50.28 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 323
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.60 E-value=0.12 Score=55.07 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.3
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..-.||+|+|..|+|||||++.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3467999999999999999999876
No 324
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.56 E-value=0.12 Score=53.00 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|..|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999999987
No 325
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.48 E-value=0.075 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
No 326
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.47 E-value=0.042 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=16.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 327
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.46 E-value=0.075 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|||+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998876
No 328
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.45 E-value=0.049 Score=53.04 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 329
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.45 E-value=0.063 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
. .+++|+|..|.|||||.+.+..
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 5 7999999999999999999986
No 330
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.44 E-value=0.07 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|+|+|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 331
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.41 E-value=0.051 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=18.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.|-|+|..|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999998865
No 332
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.41 E-value=0.13 Score=54.52 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCC---CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 186 EKKELVDRLLCEGS---KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 186 ~~~~l~~~L~~~~~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.+++.++|..... ......++|.|+|.||+||||+|..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566666653211 0123578999999999999999988876
No 333
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.39 E-value=0.066 Score=49.87 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-++|.|+|..|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999875
No 334
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.35 E-value=0.086 Score=56.83 Aligned_cols=54 Identities=26% Similarity=0.344 Sum_probs=36.2
Q ss_pred ccCCccccchhhHHHHHHHHhcCCC-----C-CCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 175 IDVSEIFGRPKEKKELVDRLLCEGS-----K-EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 175 ~~~~~~vG~~~~~~~l~~~L~~~~~-----~-~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
+..++++|.++.+.++.++...-.. . +-.-.+=|.|+|..|+||||||+++.+.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456799999887777665532100 0 0011123889999999999999999873
No 335
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.33 E-value=0.17 Score=43.57 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=38.3
Q ss_pred EEEeecCCCcc--ccchhhhcCCCCcEeecCCCccccccccc-ccCCCcCcEEecCCCc
Q 036753 485 YLNLKGQKKIE--NLPETLCELYNLECLNVDDCQNLRELPRG-IGKLRKLMYLHNEDTG 540 (725)
Q Consensus 485 ~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 540 (725)
.++.+++. ++ .+|..+. .+|++|+|++|. +..+|.+ +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 56666666 66 7776432 468888998887 7777775 5778888888888873
No 336
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.33 E-value=0.19 Score=46.67 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 337
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.30 E-value=0.067 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 338
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.29 E-value=0.07 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 339
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.27 E-value=0.077 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 340
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.25 E-value=0.2 Score=52.79 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCE--------GSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..|+|-++.++.+...+... ........+-|-++|..|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35899999888887766321 000011234578999999999999999987
No 341
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.25 E-value=0.071 Score=58.52 Aligned_cols=50 Identities=28% Similarity=0.347 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+++|.++-++.+.+.+....-.....-.++.++|..|+||||||+.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45899988887776655321100112456899999999999999999987
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.25 E-value=0.11 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998865
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.20 E-value=0.07 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|.|.|..|+||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 344
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.16 E-value=0.11 Score=54.21 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=34.0
Q ss_pred ccccchhhHHHHHHHHhc----CC--------------------CCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 179 EIFGRPKEKKELVDRLLC----EG--------------------SKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 179 ~~vG~~~~~~~l~~~L~~----~~--------------------~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|.+..++.|...+.. .. .........|-++|..|+||||+|+.+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 478988888888777620 00 00011234577999999999999999987
No 345
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.16 E-value=0.093 Score=51.49 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 202 QKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 202 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.....++.+.|.||+||||++..+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 34678899999999999999998875
No 346
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.15 E-value=0.07 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999876
No 347
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.08 E-value=0.083 Score=50.00 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|.|+|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 348
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.08 E-value=0.16 Score=49.11 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=35.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhc----cccceeeeecCCCccHHHHHHHHHHHh
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKK----HFDERIWVCVSEPFDEFRIARAVIEAL 260 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l 260 (725)
.-.++.|+|..|+||||||+.+........ .-...+|+.....++...+. .++..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 82 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERY 82 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHc
Confidence 346999999999999999998876311111 12457788766655554443 334444
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.07 E-value=0.12 Score=47.82 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....|.|+|.+|+|||||.+.+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557889999999999999988764
No 350
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.07 E-value=0.073 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456999999999999999999876
No 351
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.05 E-value=0.14 Score=51.35 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=33.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeec--CCC-----ccHHHHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCV--SEP-----FDEFRIARAVIEALK 261 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~-----~~~~~l~~~i~~~l~ 261 (725)
-+++-|+|++|+||||||.++... .-..++|++. +.. .+...++..+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh
Confidence 456789999999999999998763 1223456666 221 245555555555443
No 352
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.00 E-value=0.078 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....|.|.|+.|+||||+|+.+.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 353
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.98 E-value=0.084 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|+|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999865
No 354
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.87 E-value=0.051 Score=52.36 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=16.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHh-c
Q 036753 205 PCIISLVGMGGIGKTTLAQFAY-N 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~-~ 227 (725)
-.+++|+|..|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 355
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.86 E-value=0.17 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...||.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 356
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.85 E-value=0.08 Score=49.80 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+|+|.|..|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998865
No 357
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.83 E-value=0.077 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 358
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.82 E-value=0.099 Score=55.34 Aligned_cols=43 Identities=40% Similarity=0.346 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCC---CCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 186 EKKELVDRLLCEGSK---EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 186 ~~~~l~~~L~~~~~~---~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.+++.+++...... ......+|.|+|.+|+||||+|..+...
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345566666543110 1134679999999999999999988763
No 359
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.80 E-value=0.1 Score=53.03 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999876
No 360
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.79 E-value=0.09 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.8
Q ss_pred CCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 202 QKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 202 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....++|+|+|-||+||||+|-.+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999999988765
No 361
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.79 E-value=0.078 Score=54.59 Aligned_cols=45 Identities=24% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 177 VSEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 177 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-++++|.+..++.+...+.... ..-|-|+|..|+|||+||+.+.+
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 4569999886665444443221 11277999999999999999987
No 362
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.78 E-value=0.077 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 363
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.75 E-value=0.067 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+++|+|..|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999863
No 364
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.69 E-value=0.084 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999976
No 365
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.69 E-value=0.12 Score=51.77 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=27.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCC
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEP 246 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 246 (725)
.=.+++|+|..|.|||||++.+..- . ...+...+.|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl--~----~G~I~~~v~q~ 161 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF--L----GGSVLSFANHK 161 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH--H----TCEEECGGGTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh--c----CceEEEEecCc
Confidence 4568999999999999999998762 2 55565545443
No 366
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.68 E-value=0.083 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 367
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.65 E-value=0.085 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|+|||||.+.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999976
No 368
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.56 E-value=0.089 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 369
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.55 E-value=0.087 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.55 E-value=0.094 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 371
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.53 E-value=0.096 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 372
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.50 E-value=0.091 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 373
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.49 E-value=0.091 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 374
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.49 E-value=0.091 Score=51.57 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999986
No 375
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.48 E-value=0.078 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999976
No 376
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.45 E-value=0.096 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 377
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.44 E-value=0.094 Score=49.75 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 378
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.41 E-value=0.18 Score=54.29 Aligned_cols=41 Identities=29% Similarity=0.222 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCC---CCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 187 KKELVDRLLCEGSK---EQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 187 ~~~l~~~L~~~~~~---~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+++.++|...... .....++|.|+|.+|+||||++..+..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566666442210 113578999999999999999998875
No 379
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.36 E-value=0.097 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|+|.|..|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998875
No 380
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.32 E-value=0.1 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 381
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.32 E-value=0.1 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||++.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 382
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.28 E-value=0.099 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 383
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.26 E-value=0.1 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 384
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.26 E-value=0.092 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998865
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.26 E-value=0.093 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999998876
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.19 E-value=0.11 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..-.+|+|.|..|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3557999999999999999998876
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.16 E-value=0.1 Score=49.45 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.|.|.|..|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998854
No 388
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.15 E-value=0.2 Score=50.53 Aligned_cols=40 Identities=23% Similarity=0.103 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 186 EKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..+.+.+++..... .....|-|+|..|+|||+||+++.+.
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34444555543221 12467789999999999999999984
No 389
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.08 E-value=0.11 Score=51.43 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||++.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999986
No 390
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.07 E-value=0.11 Score=51.07 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 391
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.07 E-value=0.11 Score=50.61 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 392
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.97 E-value=0.11 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999986
No 393
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.94 E-value=0.21 Score=52.58 Aligned_cols=24 Identities=50% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...||.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998876
No 394
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.90 E-value=0.11 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 395
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.87 E-value=0.11 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 396
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.75 E-value=0.16 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 446999999999999999999876
No 397
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.71 E-value=0.38 Score=48.11 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=34.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhcccc-ceeeeecCCCccHHHHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFD-ERIWVCVSEPFDEFRIARAVIEALK 261 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i~~~l~ 261 (725)
.-.+++|+|..|+|||||++.+... +...-. .++|+... ....++.+.++....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e--~~~~~~~~r~~~~~~ 88 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE--ESVEETAEDLIGLHN 88 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc--CCHHHHHHHHHHHHc
Confidence 3458999999999999999998774 222222 34455433 244556666555443
No 398
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.68 E-value=0.13 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999988764
No 399
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.64 E-value=0.14 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998865
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.56 E-value=0.12 Score=52.44 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+.++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999998853
No 401
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.46 E-value=0.15 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47899999999999999988875
No 402
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.40 E-value=0.16 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.37 E-value=0.14 Score=48.42 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998865
No 404
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.35 E-value=0.16 Score=50.89 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|+|.+|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 405
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.34 E-value=0.18 Score=56.17 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=35.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++++|.+..++.+...+... ..+.|+|..|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899988888877777532 3789999999999999999987
No 406
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.33 E-value=0.16 Score=48.08 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.4
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+||-|.|.+|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998865
No 407
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.28 E-value=0.16 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6888999999999999988765
No 408
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.25 E-value=0.16 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-|.|+|.+|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988764
No 409
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.21 E-value=0.14 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 410
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.19 E-value=0.081 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=18.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 411
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.18 E-value=0.11 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999876
No 412
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.17 E-value=0.14 Score=47.09 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999998874
No 413
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.17 E-value=0.16 Score=50.14 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
No 414
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.17 E-value=0.24 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.116 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.09 E-value=0.33 Score=46.48 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-.+|.|.|..|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 416
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.00 E-value=0.15 Score=45.38 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.++|.+|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 417
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.96 E-value=0.15 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.87 E-value=0.17 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=20.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....|.|.|+.|+||||+|+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998876
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.83 E-value=0.16 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998865
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.82 E-value=0.16 Score=50.94 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998865
No 421
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.79 E-value=0.16 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999999976
No 422
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.79 E-value=0.34 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|+|.+|+|||||++.+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 678999999999999999998865
No 423
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.76 E-value=0.24 Score=49.59 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=21.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..+|+++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999998876
No 424
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.75 E-value=0.15 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-.+++|+|..|+|||||++.+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998853
No 425
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.67 E-value=0.34 Score=55.63 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGS---KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++|.+..++.+...+..... ........+-++|..|+|||++|+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999998888865321 0122344788999999999999999987
No 426
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.63 E-value=0.16 Score=47.43 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 427
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.53 E-value=0.16 Score=46.75 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
--|.|+|.+|+|||||++.+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.52 E-value=0.18 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 203 KGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 203 ~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
....+|-|+|+.|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 429
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.50 E-value=0.35 Score=49.67 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=32.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccc---cce-eeeecCCCccHHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHF---DER-IWVCVSEPFDEFR 251 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~-~wv~vs~~~~~~~ 251 (725)
.-.++.|+|..|+|||||++.+.......... ... +|+.-...+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 55799999999999999999987632111111 233 7887665554333
No 430
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.45 E-value=0.25 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....|.|+|..|+|||||.+.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 431
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.41 E-value=0.21 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...|+|+|..|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 432
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.35 E-value=0.17 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 433
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.25 E-value=0.21 Score=45.75 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 036753 207 IISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+.+|+|..|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999864
No 434
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.22 E-value=0.22 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 566999999999999999999987
No 435
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.19 E-value=0.28 Score=45.52 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+|+|+||.|+||+|.|..+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 567999999999999999987643
No 436
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.18 E-value=0.2 Score=45.21 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345789999999999999988764
No 437
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.18 E-value=0.21 Score=45.24 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..|+|+|..|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998764
No 438
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.17 E-value=0.21 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++|.|+|+.|+||||||..+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.15 E-value=0.18 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.7
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-.++.|+|.+|+||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 440
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.13 E-value=0.47 Score=48.95 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
++++|+|+|..|+|||||.+.+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 5778999999999999999999874
No 441
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.12 E-value=0.44 Score=48.34 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=39.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhcc----ccceeeeecCCCccHHHHHHHHHHHhcC
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKH----FDERIWVCVSEPFDEFRIARAVIEALKS 262 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 262 (725)
.-.++-|+|..|+||||||..+......... =..++|++....|+..++.+ +++.+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~ 167 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGL 167 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCC
Confidence 3468999999999999999988753211111 23578898888887777654 3454433
No 442
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.11 E-value=0.37 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+++|+|..|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999875
No 443
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.11 E-value=0.45 Score=48.27 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=40.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhc---------cc-----cceeeeecCCCccHHHHHHHHHHHhcC
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKK---------HF-----DERIWVCVSEPFDEFRIARAVIEALKS 262 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~l~~~i~~~l~~ 262 (725)
.-.++-|+|..|+||||||..+..+..... .. ..++|++....|+..++.+. +..+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCC
Confidence 457999999999999999998875322211 11 36788988888887777643 444443
No 444
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.06 E-value=0.19 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.=.+++|+|..|.|||||.+.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346899999999999999999976
No 445
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.03 E-value=0.5 Score=48.37 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEF 250 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (725)
.-.++.|+|..|+||||||..+... ....=..++|+.....++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH
Confidence 4579999999999999999998864 22222345688766666543
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.01 E-value=0.23 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...|.|.|.-|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999998876
No 447
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.83 E-value=0.21 Score=44.60 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3689999999999999988653
No 448
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.79 E-value=0.27 Score=44.51 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....|.|+|..|+|||||.+.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5667889999999999999988764
No 449
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.78 E-value=0.45 Score=48.74 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDE 249 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (725)
.-.++.|+|.+|+||||||..+... ....=..++|++....++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCH
Confidence 4568999999999999999988763 2222235778887776664
No 450
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.77 E-value=0.22 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999986
No 451
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.72 E-value=0.21 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-|.|+|..|+|||||.+.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999988764
No 452
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.68 E-value=0.51 Score=48.27 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=39.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhc----cccceeeeecCCCccHHHHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKK----HFDERIWVCVSEPFDEFRIARAVIEALK 261 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 261 (725)
.-.++-|+|..|+||||||..+........ .=..++|++....|+...+.. ++..+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 557999999999999999998876322211 124578898888888776654 344443
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.66 E-value=0.22 Score=49.61 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.6
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.++|.|+|..|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998865
No 454
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.65 E-value=0.25 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
+..+|+|+|.+|+|||||.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999876
No 455
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.64 E-value=0.22 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.|+|.+|+|||||.+.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 456
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.57 E-value=0.31 Score=48.88 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=26.0
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHh
Q 036753 186 EKKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAY 226 (725)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~ 226 (725)
.++++.+.+. -.+++++|..|+|||||.+.+.
T Consensus 155 gi~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 4666666663 2488999999999999999997
No 457
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.54 E-value=0.21 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.|+|..|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 458
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.53 E-value=0.22 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-|.|+|.+|+|||||.+.+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999988764
No 459
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.53 E-value=0.32 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....|.|+|..|+|||||.+.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4456789999999999999998875
No 460
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.49 E-value=6.2 Score=41.88 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHHHHHHh
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARAVIEAL 260 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 260 (725)
.-.++.|.|.+|+||||||..+..+.... .=..++|++.. -...++...++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRMLCAE 255 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHHHHH
Confidence 44688999999999999999988743222 11245666543 34567777765543
No 461
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.47 E-value=0.54 Score=46.93 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 187 KKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.+++.+.|............-|+|+|..|+|||||.+.+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 445555554432212335678999999999999999998764
No 462
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.42 E-value=0.55 Score=49.00 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=36.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhc----cccceeeeecCCCccHHHHHHHHHHHhcC
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKK----HFDERIWVCVSEPFDEFRIARAVIEALKS 262 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 262 (725)
.-.++.|+|..|+|||||+..+.-...... .-..++|+.....++...+.. +++.+..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~-~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS-IAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH-HHHHcCC
Confidence 446999999999999999996642111111 223477887666666555433 5555544
No 463
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.40 E-value=0.23 Score=45.49 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..-|.|+|.+|+|||||++.+.++
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999988764
No 464
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.36 E-value=0.24 Score=44.41 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
--|.|+|..|+|||||.+.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999998864
No 465
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.30 E-value=0.23 Score=44.61 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.--|.|+|..|+|||||.+.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999988764
No 466
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.30 E-value=0.32 Score=45.05 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=40.4
Q ss_pred CcccccEEEeccC-Ccccc-ccchhHHhhcCCcceEEEeccccCCCccccccc-----cccccccCccccEEEeecCCCc
Q 036753 422 GLRGLRSLLVKSD-EYSWS-SEGLPQLFEKLTCLRALELQVRESWPRNSLIKE-----IPTNIEKLLHLKYLNLKGQKKI 494 (725)
Q Consensus 422 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~~-----lp~~i~~l~~Lr~L~L~~~~~i 494 (725)
+-+.|+.|.++++ .+... ...+-+.+..-+.|+.|+|+ +|. +.. +-..+..-..|++|+|++|. |
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~------~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA------NTA-ISDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT------TSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc------CCC-CChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 4455666666653 33110 00133334555566666666 555 321 22223333456666666665 4
Q ss_pred c-----ccchhhhcCCCCcEeecCCC
Q 036753 495 E-----NLPETLCELYNLECLNVDDC 515 (725)
Q Consensus 495 ~-----~lp~~i~~L~~L~~L~l~~~ 515 (725)
. .+-+.+..-+.|++|+|++|
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3 12233334445666666544
No 467
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.30 E-value=0.21 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.3
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999987765
No 468
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.26 E-value=0.23 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+| +|+|..|+|||||.+.++.
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC
T ss_pred EEE-EEECCCCCCHHHHHHHHhC
Confidence 444 9999999999999999886
No 469
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.20 E-value=0.37 Score=44.77 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 187 KKELVDRLLCEGSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
...+..++.. .+.-..+-|+|.+|.||||+|..+.+
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4445555532 12334689999999999999988876
No 470
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.13 E-value=0.25 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...-|.|+|..|+|||||.+.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4557889999999999999988764
No 471
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.12 E-value=0.28 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.|+|.+|+|||||.+.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998774
No 472
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.09 E-value=0.27 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.2
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..-|.|+|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34567999999999999987766
No 473
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.09 E-value=0.24 Score=44.94 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
..--|.|+|..|+|||||.+.+.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999998775
No 474
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.09 E-value=0.51 Score=48.44 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=33.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEF 250 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (725)
.-+++-|.|.+|+||||||..+... ....=..++|++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH
Confidence 4468999999999999999888763 22222367888887777643
No 475
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.06 E-value=0.25 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999976
No 476
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.99 E-value=0.24 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
--|.|+|..|+|||||.+.+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999988764
No 477
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.97 E-value=0.25 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.8
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-..++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998865
No 478
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.95 E-value=0.25 Score=44.28 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.|+|..|+|||||.+.+.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 479
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.95 E-value=0.36 Score=44.12 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999988764
No 480
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.86 E-value=0.29 Score=46.26 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....|.|+|.+|+|||||++.+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999988764
No 481
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.82 E-value=0.88 Score=42.87 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
-..|.|-|..|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 482
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.78 E-value=0.66 Score=46.81 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=38.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHHHHHHhcC
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARAVIEALKS 262 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 262 (725)
.-.++-|.|.+|+||||+|..+..+... +. ..++|++.- -...++...++....+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-~~vl~~slE--~s~~~l~~R~~~~~~~ 121 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-ND-DVVNLHSLE--MGKKENIKRLIVTAGS 121 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-CEEEEEESS--SCHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-CeEEEEECC--CCHHHHHHHHHHHHcC
Confidence 4468889999999999999988754222 22 456666544 4677888887776544
No 483
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=87.77 E-value=0.25 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=19.5
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999876653
No 484
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.74 E-value=0.26 Score=43.93 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 036753 207 IISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 207 vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
-|.|+|..|+|||||.+.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999887753
No 485
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.70 E-value=0.29 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 486
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.66 E-value=0.26 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...-|.|+|..|+|||||.+.+.++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4556889999999999999888764
No 487
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.65 E-value=0.24 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.-.+|.|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347899999999999999999987
No 488
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.62 E-value=0.94 Score=42.94 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.4
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-..|.|.|..|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999873
No 489
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=87.62 E-value=0.26 Score=45.34 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.1
Q ss_pred CEEEEEEecCCCcHHHHHHHHhcc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.--|.|+|.+|+|||||.+.+.++
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345789999999999999888764
No 490
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.62 E-value=0.21 Score=46.87 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
.-..|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999888764
No 491
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.61 E-value=0.66 Score=42.93 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=51.6
Q ss_pred hhHHhhcCCcceEEEeccccCCCcc-cccc-----ccccccccCccccEEEeecCCCcc-----ccchhhhcCCCCcEee
Q 036753 443 LPQLFEKLTCLRALELQVRESWPRN-SLIK-----EIPTNIEKLLHLKYLNLKGQKKIE-----NLPETLCELYNLECLN 511 (725)
Q Consensus 443 ~~~~~~~l~~Lr~L~L~~~~~~~~~-~~~~-----~lp~~i~~l~~Lr~L~L~~~~~i~-----~lp~~i~~L~~L~~L~ 511 (725)
+...+.+-+.|+.|+|+ ++ . +. .+-..+..-.+|+.|+|++|. +. .+-..+..-+.|++|+
T Consensus 33 l~~ll~~n~~L~~L~L~------~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 33 INRLREDDTDLKEVNIN------NMKR-VSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp HHHHHTTCSSCCEEECT------TCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEE
T ss_pred HHHHHhcCCCccEEECC------CCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEe
Confidence 44445666778888887 54 3 32 233445555678888888777 44 3444555666777777
Q ss_pred cCCCccccc-----ccccccCCCcCcEEecCCC
Q 036753 512 VDDCQNLRE-----LPRGIGKLRKLMYLHNEDT 539 (725)
Q Consensus 512 l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 539 (725)
|++|. ++. +-..+..-+.|+.|++++|
T Consensus 105 L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 77776 331 2233444455666666543
No 492
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.60 E-value=0.23 Score=47.08 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
.+|+|.|+.|+||||+|+.+-.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998754
No 493
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.57 E-value=0.47 Score=45.74 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=30.3
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcchhhhccccceeeeecCCCccHHHHHHH
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNNDDVKKHFDERIWVCVSEPFDEFRIARA 255 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 255 (725)
.-.++.|+|.+|+||||||..+... ....=..++|+..... ..++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHH
Confidence 3458999999999999998877553 2222234566654443 3444443
No 494
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.57 E-value=3.8 Score=41.93 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
....|+|+|..|+|||||.+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5668999999999999999998764
No 495
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.53 E-value=0.27 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 35899999999999999999976
No 496
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.51 E-value=0.59 Score=43.58 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEEE-ecCCCcHHHHHHHHhc
Q 036753 206 CIISLV-GMGGIGKTTLAQFAYN 227 (725)
Q Consensus 206 ~vi~i~-G~gGiGKTtLa~~v~~ 227 (725)
++|+|+ +-||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 688998 6799999999988876
No 497
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.50 E-value=0.33 Score=55.79 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEecCCCcHHHHHHHHhc
Q 036753 178 SEIFGRPKEKKELVDRLLCEGS---KEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 178 ~~~vG~~~~~~~l~~~L~~~~~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
..++|.+..++.+...+..... ..+.....+-++|..|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 3588999999888887754211 0122345788999999999999999987
No 498
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.50 E-value=0.29 Score=43.87 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcc
Q 036753 206 CIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 206 ~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
--|.|+|..|+|||||.+.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999988754
No 499
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.49 E-value=0.28 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCcHHHHHHHHhc
Q 036753 205 PCIISLVGMGGIGKTTLAQFAYN 227 (725)
Q Consensus 205 ~~vi~i~G~gGiGKTtLa~~v~~ 227 (725)
=.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999999976
No 500
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.45 E-value=0.39 Score=45.85 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCcHHHHHHHHhcc
Q 036753 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (725)
Q Consensus 204 ~~~vi~i~G~gGiGKTtLa~~v~~~ 228 (725)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5667889999999999999998764
Done!