BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036755
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 52 PVIDL----GSPQAATL--IRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQK 105
P+I L G +AAT I+ ACE WG F++ NHGIP ++ + VE T+ + Q+
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR 64
Query: 106 ---LLAGRSPE 113
L+A ++ E
Sbjct: 65 FKELVASKALE 75
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 51 VPVIDLGSPQAA-TLIRQACEK--------WGAFQVTNHGIPIKLLNQVEFQTRRLFALP 101
VP IDL + ++ IR+ C + WG + NHGIP L+ +V+ F+L
Sbjct: 46 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 105
Query: 102 A--NQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQL--WP 151
+K ++ GYG + +L W + F L P + R L WP
Sbjct: 106 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYP-EEKRDLSIWP 158
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 51 VPVIDLGSPQAA-TLIRQACEK--------WGAFQVTNHGIPIKLLNQVEFQTRRLFALP 101
VP IDL + ++ IR+ C + WG + NHGIP L+ +V+ F+L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 102 AN--QKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQL--WP 151
+K ++ GYG + +L W + F L P + R L WP
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYP-EEKRDLSIWP 159
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 51 VPVIDLGSPQAA-TLIRQACEK--------WGAFQVTNHGIPIKLLNQVEFQTRRLFALP 101
VP IDL + ++ IR+ C + WG + NHGIP L +V+ F+L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLS 106
Query: 102 AN--QKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQL--WP 151
+K ++ GYG + +L W + F L P + R L WP
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYP-EEKRDLSIWP 159
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 30.8 bits (68), Expect = 0.39, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 96 RLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGF 136
R+ +LP+ + LL G PED R S S+L+W E F
Sbjct: 307 RIVSLPSGEPLLEGGLPEDL------RRSIAGSRLVWVESF 341
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 30.4 bits (67), Expect = 0.39, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 96 RLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGF 136
R+ +LP+ + LL G PED R S S+L+W E F
Sbjct: 307 RIVSLPSGEPLLEGGLPEDL------RRSIAGSRLVWVESF 341
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 30.4 bits (67), Expect = 0.39, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 96 RLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGF 136
R+ +LP+ + LL G PED R S S+L+W E F
Sbjct: 307 RIVSLPSGEPLLEGGLPEDL------RRSIAGSRLVWVESF 341
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 30.4 bits (67), Expect = 0.40, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 96 RLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGF 136
R+ +LP+ + LL G PED R S S+L+W E F
Sbjct: 307 RIVSLPSGEPLLEGGLPEDL------RRSIAGSRLVWVESF 341
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 30.4 bits (67), Expect = 0.40, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 96 RLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGF 136
R+ +LP+ + LL G PED R S S+L+W E F
Sbjct: 307 RIVSLPSGEPLLEGGLPEDL------RRSIAGSRLVWVESF 341
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 30.4 bits (67), Expect = 0.41, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 96 RLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGF 136
R+ +LP+ + LL G PED R S S+L+W E F
Sbjct: 287 RIVSLPSGEPLLEGGLPEDL------RRSIAGSRLVWVESF 321
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 70 EKWGAFQVTNHGIPIKLLNQVEF-QTRRLFALPANQKLLAGRSPEDFTGYG 119
EKW +F V N IKL VE T ++ LP+ LL P TG+G
Sbjct: 95 EKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWG 145
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 39 DHPMADP-LTHAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLN 88
D + DP L AA+P++ + Q A I QAC K G + T LLN
Sbjct: 245 DFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGXLKSTYGTGCFALLN 295
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 79 NHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPE 113
H IP+ ++NQV F +R P ++ L R +
Sbjct: 144 KHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKD 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,337,921
Number of Sequences: 62578
Number of extensions: 215347
Number of successful extensions: 371
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 13
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)