Query 036755
Match_columns 159
No_of_seqs 172 out of 1175
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:11:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02254 gibberellin 3-beta-di 100.0 1.7E-31 3.6E-36 223.9 12.7 156 3-158 4-164 (358)
2 PLN02216 protein SRG1 100.0 1.6E-29 3.5E-34 211.9 11.8 139 20-158 19-168 (357)
3 PLN02758 oxidoreductase, 2OG-F 100.0 1.6E-29 3.6E-34 212.1 11.1 139 20-158 19-170 (361)
4 PLN02393 leucoanthocyanidin di 100.0 1.3E-29 2.8E-34 212.8 9.9 148 9-158 8-169 (362)
5 PF14226 DIOX_N: non-haem diox 100.0 4.2E-29 9.2E-34 177.6 8.2 102 51-153 1-116 (116)
6 PLN02947 oxidoreductase 100.0 1.7E-28 3.7E-33 206.8 10.3 139 20-158 30-181 (374)
7 PLN02515 naringenin,2-oxogluta 99.9 9.3E-28 2E-32 201.3 11.6 137 22-158 8-154 (358)
8 PLN03178 leucoanthocyanidin di 99.9 3.8E-28 8.3E-33 203.8 8.9 143 14-158 6-167 (360)
9 PLN02904 oxidoreductase 99.9 1.7E-27 3.6E-32 199.7 11.9 139 20-158 18-167 (357)
10 PLN02276 gibberellin 20-oxidas 99.9 3.7E-27 8.1E-32 197.9 11.5 131 27-158 18-165 (361)
11 PLN02704 flavonol synthase 99.9 8E-27 1.7E-31 194.1 11.5 133 26-158 16-156 (335)
12 PLN02912 oxidoreductase, 2OG-F 99.9 5.3E-27 1.1E-31 196.1 10.2 140 15-158 7-156 (348)
13 PLN02639 oxidoreductase, 2OG-F 99.9 1.3E-26 2.9E-31 192.9 10.7 138 20-158 4-149 (337)
14 PLN00417 oxidoreductase, 2OG-F 99.9 1.7E-26 3.6E-31 193.1 10.8 137 21-158 12-161 (348)
15 PLN02750 oxidoreductase, 2OG-F 99.9 6E-26 1.3E-30 189.5 11.9 130 27-158 2-152 (345)
16 KOG0143 Iron/ascorbate family 99.9 4.1E-25 8.8E-30 183.1 9.9 112 47-158 14-134 (322)
17 PTZ00273 oxidase reductase; Pr 99.9 1.2E-24 2.7E-29 179.8 10.8 112 47-158 2-136 (320)
18 PLN02485 oxidoreductase 99.9 1.8E-24 3.8E-29 179.6 10.1 111 48-158 5-142 (329)
19 PLN03002 oxidoreductase, 2OG-F 99.9 5.7E-24 1.2E-28 176.9 11.7 111 47-158 11-139 (332)
20 PLN02997 flavonol synthase 99.9 7.9E-24 1.7E-28 175.6 11.7 107 48-158 30-140 (325)
21 PLN03176 flavanone-3-hydroxyla 99.9 1E-23 2.2E-28 152.1 9.9 95 27-121 13-116 (120)
22 PLN02156 gibberellin 2-beta-di 99.9 1.8E-23 3.8E-28 174.1 11.0 108 48-158 24-134 (335)
23 COG3491 PcbC Isopenicillin N s 99.9 7.7E-24 1.7E-28 172.0 8.1 110 48-158 3-133 (322)
24 PLN02299 1-aminocyclopropane-1 99.9 2.8E-23 6E-28 172.1 8.6 106 47-158 3-114 (321)
25 PLN02403 aminocyclopropanecarb 99.9 8.9E-22 1.9E-26 162.0 7.8 102 50-158 2-109 (303)
26 PLN02984 oxidoreductase, 2OG-F 99.8 5.5E-21 1.2E-25 159.5 10.1 94 47-141 35-138 (341)
27 PLN02365 2-oxoglutarate-depend 99.8 4.9E-21 1.1E-25 157.3 9.6 86 48-139 3-89 (300)
28 PLN03001 oxidoreductase, 2OG-F 98.8 5.5E-09 1.2E-13 84.6 3.3 69 90-158 1-75 (262)
29 COG0289 DapB Dihydrodipicolina 76.8 8.2 0.00018 31.5 5.8 39 61-99 107-145 (266)
30 PRK08130 putative aldolase; Va 75.9 3.4 7.4E-05 32.2 3.4 34 49-82 126-162 (213)
31 PF01113 DapB_N: Dihydrodipico 74.6 5.6 0.00012 28.2 4.0 45 52-96 70-115 (124)
32 PRK08333 L-fuculose phosphate 73.7 4.3 9.2E-05 30.8 3.3 33 50-82 120-155 (184)
33 PF07350 DUF1479: Protein of u 70.4 6.9 0.00015 34.0 4.2 52 47-99 46-100 (416)
34 PRK05874 L-fuculose-phosphate 66.5 6.8 0.00015 30.8 3.1 33 50-82 127-162 (217)
35 COG1402 Uncharacterized protei 61.7 30 0.00065 28.0 6.1 40 60-99 90-132 (250)
36 PF00596 Aldolase_II: Class II 61.4 5.4 0.00012 30.0 1.7 34 49-82 122-159 (184)
37 TIGR02130 dapB_plant dihydrodi 60.6 24 0.00052 29.0 5.4 36 63-99 109-144 (275)
38 PRK06833 L-fuculose phosphate 58.1 11 0.00024 29.3 3.0 33 50-82 124-159 (214)
39 PRK03634 rhamnulose-1-phosphat 57.0 12 0.00027 30.4 3.2 33 50-82 179-214 (274)
40 PRK08660 L-fuculose phosphate 56.1 16 0.00036 27.5 3.6 32 50-82 115-149 (181)
41 PRK08087 L-fuculose phosphate 54.6 15 0.00033 28.6 3.3 33 50-82 122-157 (215)
42 PRK06754 mtnB methylthioribulo 52.6 15 0.00033 28.5 2.9 33 50-82 137-172 (208)
43 PLN02775 Probable dihydrodipic 52.4 42 0.00092 27.7 5.6 28 71-98 127-154 (286)
44 TIGR02409 carnitine_bodg gamma 50.1 29 0.00064 29.2 4.5 47 49-98 108-158 (366)
45 TIGR02624 rhamnu_1P_ald rhamnu 49.8 17 0.00037 29.6 2.9 33 50-82 177-212 (270)
46 PRK06755 hypothetical protein; 49.1 17 0.00037 28.5 2.7 33 50-82 136-171 (209)
47 PRK00048 dihydrodipicolinate r 48.5 51 0.0011 26.3 5.5 38 61-98 98-135 (257)
48 TIGR03328 salvage_mtnB methylt 48.4 24 0.00053 26.9 3.4 33 50-82 126-163 (193)
49 TIGR01086 fucA L-fuculose phos 48.4 19 0.00042 27.9 2.9 32 51-82 122-156 (214)
50 PRK06357 hypothetical protein; 45.6 31 0.00068 27.0 3.7 32 51-82 131-171 (216)
51 PRK06557 L-ribulose-5-phosphat 44.0 22 0.00047 27.8 2.6 33 50-82 130-167 (221)
52 TIGR00036 dapB dihydrodipicoli 42.6 82 0.0018 25.3 5.8 39 60-98 105-145 (266)
53 PF11243 DUF3045: Protein of u 42.2 23 0.00051 23.7 2.1 21 63-83 36-56 (89)
54 PRK06661 hypothetical protein; 42.1 21 0.00046 28.2 2.3 23 60-82 138-160 (231)
55 cd00379 Ribosomal_L10_P0 Ribos 40.6 1E+02 0.0022 22.2 5.7 37 60-96 5-42 (155)
56 cd00398 Aldolase_II Class II A 40.4 18 0.00039 27.9 1.6 34 49-82 121-159 (209)
57 PRK09553 tauD taurine dioxygen 40.3 68 0.0015 25.8 5.1 49 49-100 14-65 (277)
58 PF08248 Tryp_FSAP: Tryptophyl 39.7 17 0.00037 15.4 0.8 10 7-16 3-12 (12)
59 PF12368 DUF3650: Protein of u 39.2 14 0.00031 19.7 0.6 15 75-89 9-23 (28)
60 PRK05834 hypothetical protein; 39.0 38 0.00083 26.1 3.2 33 50-82 121-160 (194)
61 KOG1602 Cis-prenyltransferase 37.2 62 0.0013 26.5 4.2 48 60-107 67-121 (271)
62 PF03668 ATP_bind_2: P-loop AT 35.0 61 0.0013 26.8 4.0 31 63-95 15-45 (284)
63 PRK07490 hypothetical protein; 34.9 40 0.00088 26.8 2.9 23 60-82 147-169 (245)
64 PRK12462 phosphoserine aminotr 34.8 96 0.0021 26.4 5.3 43 55-97 305-359 (364)
65 PF02633 Creatininase: Creatin 34.7 85 0.0018 24.6 4.7 45 51-95 73-124 (237)
66 PRK09220 methylthioribulose-1- 34.0 49 0.0011 25.5 3.1 33 50-82 134-171 (204)
67 PF03460 NIR_SIR_ferr: Nitrite 33.7 67 0.0014 19.8 3.3 37 60-96 24-68 (69)
68 PF01471 PG_binding_1: Putativ 33.1 89 0.0019 18.4 3.6 41 61-101 4-44 (57)
69 PRK15331 chaperone protein Sic 32.7 44 0.00096 25.4 2.6 39 60-99 11-49 (165)
70 PRK08193 araD L-ribulose-5-pho 32.4 65 0.0014 25.4 3.7 33 50-82 124-172 (231)
71 PRK07044 aldolase II superfami 31.7 56 0.0012 26.1 3.2 33 50-82 138-174 (252)
72 cd05797 Ribosomal_L10 Ribosoma 30.6 1.8E+02 0.0039 21.1 5.6 37 60-96 7-44 (157)
73 PF08823 PG_binding_2: Putativ 29.1 91 0.002 20.3 3.3 35 59-93 15-49 (74)
74 PF02668 TauD: Taurine catabol 29.1 1.5E+02 0.0032 22.8 5.2 35 60-97 24-58 (258)
75 PF02037 SAP: SAP domain; Int 28.7 89 0.0019 17.0 2.8 28 62-92 6-33 (35)
76 cd05796 Ribosomal_P0_like Ribo 27.4 1.7E+02 0.0037 21.7 5.1 36 60-95 5-41 (163)
77 PRK00099 rplJ 50S ribosomal pr 25.6 2.5E+02 0.0054 20.9 5.7 37 60-96 8-45 (172)
78 COG4185 Uncharacterized protei 25.1 1.9E+02 0.0042 22.3 4.9 18 61-78 82-99 (187)
79 cd07041 STAS_RsbR_RsbS_like Su 24.6 1.3E+02 0.0028 20.1 3.6 39 51-90 51-89 (109)
80 PF07283 TrbH: Conjugal transf 24.1 90 0.002 22.4 2.8 24 60-83 36-59 (121)
81 cd05795 Ribosomal_P0_L10e Ribo 23.9 2.2E+02 0.0047 21.4 5.1 37 60-96 5-42 (175)
82 PRK06208 hypothetical protein; 23.6 71 0.0015 26.1 2.5 23 60-82 178-200 (274)
83 PF11043 DUF2856: Protein of u 22.9 1.2E+02 0.0026 20.4 3.0 24 84-107 20-43 (97)
84 COG1010 CobJ Precorrin-3B meth 22.7 2.4E+02 0.0051 22.9 5.2 50 48-97 127-183 (249)
85 PRK06486 hypothetical protein; 22.5 74 0.0016 25.7 2.4 24 59-82 162-185 (262)
86 PLN02452 phosphoserine transam 21.0 2.3E+02 0.0051 23.9 5.2 40 58-97 309-360 (365)
87 PRK04019 rplP0 acidic ribosoma 20.9 2.7E+02 0.0059 23.2 5.5 37 60-96 10-47 (330)
88 COG0244 RplJ Ribosomal protein 20.7 3.4E+02 0.0073 20.5 5.6 37 60-96 10-47 (175)
89 smart00513 SAP Putative DNA-bi 20.7 1.6E+02 0.0034 15.8 2.9 28 62-92 6-33 (35)
90 PF09440 eIF3_N: eIF3 subunit 20.5 72 0.0015 23.2 1.7 18 78-95 114-131 (133)
No 1
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=99.97 E-value=1.7e-31 Score=223.91 Aligned_cols=156 Identities=58% Similarity=1.071 Sum_probs=128.0
Q ss_pred cccccccCCCCCccccccccccCCCCCCCCCccCCCCC--CCCC---CCCCCCcceeeCCChHHHHHHHHHHHHcCeEEE
Q 036755 3 SVSESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDH--PMAD---PLTHAAVPVIDLGSPQAATLIRQACEKWGAFQV 77 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~i~~~~~~--~~~~---~~~~~~iPvIDls~~~~~~~l~~A~~~~GFF~l 77 (159)
|++..---+|++..+|+.+..+++.+||..|++|+.++ +... ......||||||+..+.+++|++||++||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~~~~~~l~~Ac~~~GFF~v 83 (358)
T PLN02254 4 TLSDAFRSHPLHLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDPNALTLIGHACETWGVFQV 83 (358)
T ss_pred chhhhhccCCcccccccccchhhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCHHHHHHHHHHHHHCCEEEE
Confidence 45566666788888866566666778999999999887 4321 123457999999988889999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccCCCCCcCCCCCCCCCCC
Q 036755 78 TNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHI 157 (159)
Q Consensus 78 ~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~~~n~WP~~~~~f 157 (159)
+||||++++++++++.+++||+||.|+|+++......++||+.........+.||+|+|.+...|.....|.||+++++|
T Consensus 84 vnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~f 163 (358)
T PLN02254 84 TNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKF 163 (358)
T ss_pred EcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCccccchhhCCCCchHH
Confidence 99999999999999999999999999999987666667899876654445668999999987666545679999988888
Q ss_pred C
Q 036755 158 N 158 (159)
Q Consensus 158 r 158 (159)
|
T Consensus 164 r 164 (358)
T PLN02254 164 C 164 (358)
T ss_pred H
Confidence 6
No 2
>PLN02216 protein SRG1
Probab=99.96 E-value=1.6e-29 Score=211.87 Aligned_cols=139 Identities=22% Similarity=0.391 Sum_probs=113.4
Q ss_pred ccccc-CCCCCCCCCccCCCCCCCCC--CCCCCCcceeeCCCh-------HHHHHHHHHHHHcCeEEEeecCCCHHHHHH
Q 036755 20 PLDFK-TALKLPDSHAWTLPDHPMAD--PLTHAAVPVIDLGSP-------QAATLIRQACEKWGAFQVTNHGIPIKLLNQ 89 (159)
Q Consensus 20 ~l~~~-~~~~~p~~~i~~~~~~~~~~--~~~~~~iPvIDls~~-------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~ 89 (159)
.|..+ +++.||+.|++|++++|.+. ......||+|||+.. +++++|++||++||||||+||||+.+++++
T Consensus 19 ~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~ 98 (357)
T PLN02216 19 EMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDK 98 (357)
T ss_pred HHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHH
Confidence 56555 78999999999999987542 111258999999742 478999999999999999999999999999
Q ss_pred HHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755 90 VEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN 158 (159)
Q Consensus 90 ~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr 158 (159)
+++++++||+||.|+|+++...++.++||+........+..||+|.|.+...|. ...+|.||+.+++||
T Consensus 99 ~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr 168 (357)
T PLN02216 99 VKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFR 168 (357)
T ss_pred HHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHH
Confidence 999999999999999999976555678997665433345679999998876554 356899999888875
No 3
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.96 E-value=1.6e-29 Score=212.13 Aligned_cols=139 Identities=29% Similarity=0.501 Sum_probs=113.4
Q ss_pred cccccCCCCCCCCCccCCCCCCCCC---CCCCCCcceeeCCCh---------HHHHHHHHHHHHcCeEEEeecCCCHHHH
Q 036755 20 PLDFKTALKLPDSHAWTLPDHPMAD---PLTHAAVPVIDLGSP---------QAATLIRQACEKWGAFQVTNHGIPIKLL 87 (159)
Q Consensus 20 ~l~~~~~~~~p~~~i~~~~~~~~~~---~~~~~~iPvIDls~~---------~~~~~l~~A~~~~GFF~l~nHGI~~eli 87 (159)
.|+.+++++||..|++|++++|... .....+||+|||+.. +++++|++||++||||||+||||+.+++
T Consensus 19 ~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~ 98 (361)
T PLN02758 19 ELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELL 98 (361)
T ss_pred HHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHH
Confidence 5577889999999999999887532 123468999999742 3578999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755 88 NQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN 158 (159)
Q Consensus 88 ~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr 158 (159)
+++++++++||+||.|+|+++...++..+||+........+..||+|.|.++..|. ...+|.||+.+++||
T Consensus 99 ~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr 170 (361)
T PLN02758 99 EEIEKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFS 170 (361)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcccCCCccccCcccccccccccCeeEEEEeeccCccccccccCccccHHHH
Confidence 99999999999999999999876555678997654433345679999999876553 355799999887775
No 4
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=99.96 E-value=1.3e-29 Score=212.83 Aligned_cols=148 Identities=26% Similarity=0.393 Sum_probs=119.3
Q ss_pred cCCCCCccccccccccCCCCCCCCCccCCCCCCCCC----CCCCCCcceeeCCCh---------HHHHHHHHHHHHcCeE
Q 036755 9 KNNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMAD----PLTHAAVPVIDLGSP---------QAATLIRQACEKWGAF 75 (159)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~~p~~~i~~~~~~~~~~----~~~~~~iPvIDls~~---------~~~~~l~~A~~~~GFF 75 (159)
|+.|+..++ .|+.+++.+||+.|++|+.+++... ......||+|||+.. +++++|++||++||||
T Consensus 8 ~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF 85 (362)
T PLN02393 8 WPEPIVRVQ--SLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFF 85 (362)
T ss_pred CCCccchHH--HHHhcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEE
Confidence 577888888 7777889999999999999887541 124568999999752 4788999999999999
Q ss_pred EEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCC
Q 036755 76 QVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEY 154 (159)
Q Consensus 76 ~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~ 154 (159)
||+||||+.++++++++++++||+||.|+|+++...+..++||+...........||+|.|++...+. ....|.||+.+
T Consensus 86 ~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~ 165 (362)
T PLN02393 86 QVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLP 165 (362)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCcccccccccccccccccCchhheeeeecCccccchhhCcccc
Confidence 99999999999999999999999999999999876555678995332212234679999998764443 24578999988
Q ss_pred CCCC
Q 036755 155 DHIN 158 (159)
Q Consensus 155 ~~fr 158 (159)
++||
T Consensus 166 ~~fr 169 (362)
T PLN02393 166 PSCR 169 (362)
T ss_pred hHHH
Confidence 8775
No 5
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.96 E-value=4.2e-29 Score=177.63 Aligned_cols=102 Identities=39% Similarity=0.716 Sum_probs=86.3
Q ss_pred cceeeCCC-----hHHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCccc
Q 036755 51 VPVIDLGS-----PQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRIST 125 (159)
Q Consensus 51 iPvIDls~-----~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~ 125 (159)
||||||+. .+++++|++||+++|||||+||||+.++++++++++++||+||.|+|+++.+. ..++||.+.+.+.
T Consensus 1 iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~Gy~~~~~~~ 79 (116)
T PF14226_consen 1 IPVIDLSPDPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARS-PSYRGYSPPGSES 79 (116)
T ss_dssp --EEEHGGCHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCC-TTCSEEEESEEEC
T ss_pred CCeEECCCCCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCC-CCCcccccCCccc
Confidence 79999993 36899999999999999999999999999999999999999999999999544 5789999988776
Q ss_pred cCC-CCCeeeeEeeccC-CC-------CCcCCCCCCC
Q 036755 126 FFS-KLMWTEGFTILGS-PL-------DHARQLWPHE 153 (159)
Q Consensus 126 ~~~-~~d~kE~f~~~~~-p~-------~~~~n~WP~~ 153 (159)
..+ ..||+|+|+++.. +. .+.+|+||++
T Consensus 80 ~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 80 TDGGKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPDE 116 (116)
T ss_dssp CTTCCCCSEEEEEEECC-STTCHHTGCTS-GGGS-TT
T ss_pred cCCCCCCceEEeEEECCCCccccccccccCCCCCCCC
Confidence 665 8999999999876 32 2678999975
No 6
>PLN02947 oxidoreductase
Probab=99.95 E-value=1.7e-28 Score=206.76 Aligned_cols=139 Identities=23% Similarity=0.380 Sum_probs=111.9
Q ss_pred cccccCCCCCCCCCccCCCCCCCCCC------CCCCCcceeeCCCh------HHHHHHHHHHHHcCeEEEeecCCCHHHH
Q 036755 20 PLDFKTALKLPDSHAWTLPDHPMADP------LTHAAVPVIDLGSP------QAATLIRQACEKWGAFQVTNHGIPIKLL 87 (159)
Q Consensus 20 ~l~~~~~~~~p~~~i~~~~~~~~~~~------~~~~~iPvIDls~~------~~~~~l~~A~~~~GFF~l~nHGI~~eli 87 (159)
.|..+++..||..|++|++++|.... .....||+|||+.. +++++|++||++||||||+||||+.+++
T Consensus 30 ~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li 109 (374)
T PLN02947 30 HLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGVPSEVI 109 (374)
T ss_pred HHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHH
Confidence 67888999999999999998875421 13458999999853 5789999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCHHHHhhcCCCC-CCCccccCCCccccCCCCCeeeeEeeccCCCCCcCCCCCCCCCCCC
Q 036755 88 NQVEFQTRRLFALPANQKLLAGRSP-EDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHIN 158 (159)
Q Consensus 88 ~~~~~~s~~FF~LP~eeK~~~~~~~-~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~~~n~WP~~~~~fr 158 (159)
+++++.+++||+||.|+|+++.... ....||+.......++..+|+|.+.+...|.....|.||+++++||
T Consensus 110 ~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr 181 (374)
T PLN02947 110 GGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLR 181 (374)
T ss_pred HHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCccchHHHH
Confidence 9999999999999999999986432 3346776543323345679999998766665445689999888876
No 7
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=99.95 E-value=9.3e-28 Score=201.32 Aligned_cols=137 Identities=26% Similarity=0.387 Sum_probs=108.0
Q ss_pred cccCCCCCCCCCccCCCCCCCCCC-CCCCCcceeeCCCh--------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHH
Q 036755 22 DFKTALKLPDSHAWTLPDHPMADP-LTHAAVPVIDLGSP--------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEF 92 (159)
Q Consensus 22 ~~~~~~~~p~~~i~~~~~~~~~~~-~~~~~iPvIDls~~--------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~ 92 (159)
+.+++.+||..|+++..++|.... +....||+|||+.. +++++|++||++||||||+||||+.++++++++
T Consensus 8 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~ 87 (358)
T PLN02515 8 ALAGESTLQSSFVRDEDERPKVAYNQFSDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTR 87 (358)
T ss_pred cccCCCcCCHHhcCCchhccCccccccCCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHH
Confidence 556788999999999888875421 23357999999742 478999999999999999999999999999999
Q ss_pred HHHHhhCCCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755 93 QTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN 158 (159)
Q Consensus 93 ~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr 158 (159)
.+++||+||.|+|+++.......+||.........+..||+|.|.+...+. ....|.||+++++||
T Consensus 88 ~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr 154 (358)
T PLN02515 88 LARDFFALPAEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWR 154 (358)
T ss_pred HHHHHhcCCHHHHhhhCcCCCCccCcccccccccccccCceeeeccccCcccccccccccccchHHH
Confidence 999999999999999875544467886432212234579999997754443 344699999888886
No 8
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=99.95 E-value=3.8e-28 Score=203.79 Aligned_cols=143 Identities=24% Similarity=0.403 Sum_probs=114.0
Q ss_pred CccccccccccCCCCCCCCCccCCCCCCCCC-------CCCCCCcceeeCCCh---------HHHHHHHHHHHHcCeEEE
Q 036755 14 HLKHIIPLDFKTALKLPDSHAWTLPDHPMAD-------PLTHAAVPVIDLGSP---------QAATLIRQACEKWGAFQV 77 (159)
Q Consensus 14 ~~~~~~~l~~~~~~~~p~~~i~~~~~~~~~~-------~~~~~~iPvIDls~~---------~~~~~l~~A~~~~GFF~l 77 (159)
+.+| .|+.+++..||+.|++|++.++.+. ......||+|||+.. +++++|++||++||||||
T Consensus 6 ~~~~--~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l 83 (360)
T PLN03178 6 PRVE--ALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHL 83 (360)
T ss_pred hhHH--HHHhcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEE
Confidence 3455 7778889999999999999887542 113457999999742 478999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCC--CCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCC
Q 036755 78 TNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSP--EDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEY 154 (159)
Q Consensus 78 ~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~ 154 (159)
+||||++++++++++.+++||+||.|+|+++.... +.++||+........+..||+|.|.....|. ...+|.||+.+
T Consensus 84 ~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~ 163 (360)
T PLN03178 84 VGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTP 163 (360)
T ss_pred EcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCCCc
Confidence 99999999999999999999999999999987542 3578997654433345679999886644443 34579999988
Q ss_pred CCCC
Q 036755 155 DHIN 158 (159)
Q Consensus 155 ~~fr 158 (159)
|+||
T Consensus 164 p~fr 167 (360)
T PLN03178 164 PDYV 167 (360)
T ss_pred hHHH
Confidence 8875
No 9
>PLN02904 oxidoreductase
Probab=99.95 E-value=1.7e-27 Score=199.72 Aligned_cols=139 Identities=26% Similarity=0.410 Sum_probs=109.0
Q ss_pred cccccCCCCCCCCCccCCCCCCCCCC---CCCCCcceeeCCC-------hHHHHHHHHHHHHcCeEEEeecCCCHHHHHH
Q 036755 20 PLDFKTALKLPDSHAWTLPDHPMADP---LTHAAVPVIDLGS-------PQAATLIRQACEKWGAFQVTNHGIPIKLLNQ 89 (159)
Q Consensus 20 ~l~~~~~~~~p~~~i~~~~~~~~~~~---~~~~~iPvIDls~-------~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~ 89 (159)
+|+.+++..||..|++|+.++|.+.. .....||+|||+. .+++++|++||++||||||+||||+.+++++
T Consensus 18 ~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~ 97 (357)
T PLN02904 18 TLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKD 97 (357)
T ss_pred HHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHH
Confidence 78888999999999999999886421 1236799999984 2478999999999999999999999999999
Q ss_pred HHHHHHHhhCCCHHHHhhcCCC-CCCCccccCCCccccCCCCCeeeeEeeccCCCCCcCCCCCCCCCCCC
Q 036755 90 VEFQTRRLFALPANQKLLAGRS-PEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHIN 158 (159)
Q Consensus 90 ~~~~s~~FF~LP~eeK~~~~~~-~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~~~n~WP~~~~~fr 158 (159)
+++++++||+||.|+|+++... ...+.||+.......+...+|+|.+.....|.....|.||+.+|+||
T Consensus 98 ~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr 167 (357)
T PLN02904 98 ALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYK 167 (357)
T ss_pred HHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcccccccCcccchHHH
Confidence 9999999999999999998643 23345665432222234568999887654444344799999888876
No 10
>PLN02276 gibberellin 20-oxidase
Probab=99.94 E-value=3.7e-27 Score=197.87 Aligned_cols=131 Identities=32% Similarity=0.535 Sum_probs=105.2
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCcceeeCCCh---------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHh
Q 036755 27 LKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSP---------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRL 97 (159)
Q Consensus 27 ~~~p~~~i~~~~~~~~~~~~~~~~iPvIDls~~---------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~F 97 (159)
+.||..|++|..++|.+.. ....||+|||+.. +++++|++||++||||||+||||+.++++++++++++|
T Consensus 18 ~~vp~~~~~~~~~~p~~~~-~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~F 96 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSAAV-PELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAF 96 (361)
T ss_pred CCCCHHhcCCccccCCCCC-cCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4799999999988876421 2468999999742 37789999999999999999999999999999999999
Q ss_pred hCCCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccCCC--------CCcCCCCCCCCCCCC
Q 036755 98 FALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPL--------DHARQLWPHEYDHIN 158 (159)
Q Consensus 98 F~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~--------~~~~n~WP~~~~~fr 158 (159)
|+||.|+|+++...++..+||+..+.+...+..||+|+|.++..+. ...+|.||++.++||
T Consensus 97 F~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr 165 (361)
T PLN02276 97 FKLPLSEKQRAQRKPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFG 165 (361)
T ss_pred HcCCHHHHHhhccCCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHH
Confidence 9999999999876555678999876655555679999999875432 122467876655553
No 11
>PLN02704 flavonol synthase
Probab=99.94 E-value=8e-27 Score=194.12 Aligned_cols=133 Identities=26% Similarity=0.500 Sum_probs=107.5
Q ss_pred CCCCCCCCccCCCCCCCCCC--CCCCCcceeeCCCh---HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCC
Q 036755 26 ALKLPDSHAWTLPDHPMADP--LTHAAVPVIDLGSP---QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFAL 100 (159)
Q Consensus 26 ~~~~p~~~i~~~~~~~~~~~--~~~~~iPvIDls~~---~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~L 100 (159)
+.+||..|++++.++|.+.. .....||+|||+.. +++++|++||++||||||+||||++++++++++++++||+|
T Consensus 16 ~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~L 95 (335)
T PLN02704 16 KETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDPDEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFEL 95 (335)
T ss_pred cCCCCHHHcCCcccccccccccccCCCCCeEECCCccHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcC
Confidence 78999999999999887632 13468999999864 57889999999999999999999999999999999999999
Q ss_pred CHHHHhhcCCCC--CCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755 101 PANQKLLAGRSP--EDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN 158 (159)
Q Consensus 101 P~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr 158 (159)
|.|+|+++.... ..++||+........+..+|+|.+.....|. ....|.||+++++||
T Consensus 96 P~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr 156 (335)
T PLN02704 96 PQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYR 156 (335)
T ss_pred CHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCcccchhhCccccchhH
Confidence 999999987542 3468998765444445678999875533332 234589999888886
No 12
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.94 E-value=5.3e-27 Score=196.14 Aligned_cols=140 Identities=16% Similarity=0.303 Sum_probs=105.9
Q ss_pred ccccccccccCCCCCCCCCccCCCCCCCCCC--CCCCCcceeeCCCh------HHHHHHHHHHHHcCeEEEeecCCCHHH
Q 036755 15 LKHIIPLDFKTALKLPDSHAWTLPDHPMADP--LTHAAVPVIDLGSP------QAATLIRQACEKWGAFQVTNHGIPIKL 86 (159)
Q Consensus 15 ~~~~~~l~~~~~~~~p~~~i~~~~~~~~~~~--~~~~~iPvIDls~~------~~~~~l~~A~~~~GFF~l~nHGI~~el 86 (159)
+|| .|+ +++..||+.|++|.+.++.... .....||+|||+.. +++++|++||++||||||+||||+.++
T Consensus 7 ~~~--~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l 83 (348)
T PLN02912 7 LVS--DIA-SVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPEET 83 (348)
T ss_pred HHH--HHh-cCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCHHH
Confidence 455 344 8889999999999988775321 12457999999752 478999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCHHHHhhcCC-CCCC-CccccCCCccccCCCCCeeeeEeeccCCCCCcCCCCCCCCCCCC
Q 036755 87 LNQVEFQTRRLFALPANQKLLAGR-SPED-FTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHIN 158 (159)
Q Consensus 87 i~~~~~~s~~FF~LP~eeK~~~~~-~~~~-~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~~~n~WP~~~~~fr 158 (159)
++++++++++||+||.|+|+++.. .... .+||..... ...+..+|+|.+.+...+.....|.||+++++||
T Consensus 84 ~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr 156 (348)
T PLN02912 84 IKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNV-SKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFR 156 (348)
T ss_pred HHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccccc-cccccCCchheEEEeecCcccccccCcchhHHHH
Confidence 999999999999999999999643 2222 233332221 1234579999998764443345799999888875
No 13
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.94 E-value=1.3e-26 Score=192.90 Aligned_cols=138 Identities=28% Similarity=0.414 Sum_probs=105.6
Q ss_pred cccccCC--CCCCCCCccCCCCCCCCC-CCCCCCcceeeCCCh---HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHH
Q 036755 20 PLDFKTA--LKLPDSHAWTLPDHPMAD-PLTHAAVPVIDLGSP---QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQ 93 (159)
Q Consensus 20 ~l~~~~~--~~~p~~~i~~~~~~~~~~-~~~~~~iPvIDls~~---~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~ 93 (159)
+|..+|+ .+||+.|+++++++|... ......||+|||+.. +++++|++||++||||||+||||+.+++++++++
T Consensus 4 ~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~ 83 (337)
T PLN02639 4 KLLSTGIRHTTLPESYVRPESERPRLSEVSTCENVPVIDLGSPDRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAV 83 (337)
T ss_pred hhhhhcCCcCcCCHHhcCCchhcccccccccCCCCCeEECCCccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHH
Confidence 3555665 899999999998887532 123468999999863 5889999999999999999999999999999999
Q ss_pred HHHhhCCCHHHHhhcCCC-CCC-CccccCCCccccCCCCCeeeeEeeccCCCCCcCCCCCCCCCCCC
Q 036755 94 TRRLFALPANQKLLAGRS-PED-FTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHIN 158 (159)
Q Consensus 94 s~~FF~LP~eeK~~~~~~-~~~-~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~~~n~WP~~~~~fr 158 (159)
+++||+||.|+|+++... ... ..+|..... ......+|+|.+.+...|.....|.||+.+++||
T Consensus 84 ~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr 149 (337)
T PLN02639 84 AHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNV-RKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFK 149 (337)
T ss_pred HHHHhcCCHHHHhhhhccCCCCcccccccccc-ccCcccCchheEEeeecCCcccchhCcccchHHH
Confidence 999999999999997643 222 233332221 1223568999998865554445689998888775
No 14
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.94 E-value=1.7e-26 Score=193.12 Aligned_cols=137 Identities=24% Similarity=0.380 Sum_probs=105.5
Q ss_pred ccccCCCCCCCCCccCCCCCCC--C--CCCCCCCcceeeCCCh--------HHHHHHHHHHHHcCeEEEeecCCCHHHHH
Q 036755 21 LDFKTALKLPDSHAWTLPDHPM--A--DPLTHAAVPVIDLGSP--------QAATLIRQACEKWGAFQVTNHGIPIKLLN 88 (159)
Q Consensus 21 l~~~~~~~~p~~~i~~~~~~~~--~--~~~~~~~iPvIDls~~--------~~~~~l~~A~~~~GFF~l~nHGI~~eli~ 88 (159)
|+.++ ..+|+.|++|++..+. . .......||+|||+.. +.+++|++||++||||||+||||+.++++
T Consensus 12 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~ 90 (348)
T PLN00417 12 VVAAG-EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEAFLD 90 (348)
T ss_pred HHhCC-CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHH
Confidence 44444 4899999999988531 1 1123458999999742 35789999999999999999999999999
Q ss_pred HHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755 89 QVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN 158 (159)
Q Consensus 89 ~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr 158 (159)
++++++++||+||.|+|+++.+....++||+...........||+|.+++...|. ....|.||+.+++||
T Consensus 91 ~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr 161 (348)
T PLN00417 91 KIYKLTKQFFALPTEEKQKCAREIGSIQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFR 161 (348)
T ss_pred HHHHHHHHHHcCCHHHHHHhhcCCCCccccccccccccCCCcCccceeecccCCcccccccccccccHHHH
Confidence 9999999999999999999976545678997643222234679999988765443 244699999888775
No 15
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.93 E-value=6e-26 Score=189.53 Aligned_cols=130 Identities=28% Similarity=0.456 Sum_probs=101.5
Q ss_pred CCCCCCCccCCCCCCCCCC-CCCCCcceeeCCCh------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhC
Q 036755 27 LKLPDSHAWTLPDHPMADP-LTHAAVPVIDLGSP------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFA 99 (159)
Q Consensus 27 ~~~p~~~i~~~~~~~~~~~-~~~~~iPvIDls~~------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~ 99 (159)
.++|..|+++...++.... .....||+|||+.. +++++|++||++||||||+||||+.++++++++++++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~ 81 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLTNSDEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFD 81 (345)
T ss_pred CCCCHHHcCCchhccCccccccCCCCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHc
Confidence 4789999999888775321 12458999999752 5789999999999999999999999999999999999999
Q ss_pred CCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccC-----C-----C----CCcCCCCCCCCCCCC
Q 036755 100 LPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGS-----P-----L----DHARQLWPHEYDHIN 158 (159)
Q Consensus 100 LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~-----p-----~----~~~~n~WP~~~~~fr 158 (159)
||.|+|+++.......+||.... ...+..||+|+|+++.. | . ...+|.||+++++||
T Consensus 82 LP~eeK~~~~~~~~~~~GY~~~~--~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr 152 (345)
T PLN02750 82 QTTEEKRKVKRDEVNPMGYHDSE--HTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFR 152 (345)
T ss_pred CCHHHHHhhccCCCCccCcCccc--ccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHH
Confidence 99999999865544457996432 22345699999988642 1 0 012689999887775
No 16
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=99.92 E-value=4.1e-25 Score=183.05 Aligned_cols=112 Identities=35% Similarity=0.719 Sum_probs=96.1
Q ss_pred CCCCcceeeCCC--------hHHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccc
Q 036755 47 THAAVPVIDLGS--------PQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGY 118 (159)
Q Consensus 47 ~~~~iPvIDls~--------~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY 118 (159)
....||+|||+. ..++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.+....+.||
T Consensus 14 ~~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~gY 93 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRGY 93 (322)
T ss_pred cCCCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCcccc
Confidence 356899999984 246889999999999999999999999999999999999999999999998765567999
Q ss_pred cCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755 119 GLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN 158 (159)
Q Consensus 119 ~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr 158 (159)
+...........+|++.+.+...|. ....+.||+.++.||
T Consensus 94 ~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~r 134 (322)
T KOG0143|consen 94 GTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFR 134 (322)
T ss_pred cccccccccccccchhheeeeccCccccCcccCccccHHHH
Confidence 9877653346789999998776665 367899999988775
No 17
>PTZ00273 oxidase reductase; Provisional
Probab=99.92 E-value=1.2e-24 Score=179.85 Aligned_cols=112 Identities=26% Similarity=0.421 Sum_probs=91.2
Q ss_pred CCCCcceeeCCCh---------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCC-CCCCc
Q 036755 47 THAAVPVIDLGSP---------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRS-PEDFT 116 (159)
Q Consensus 47 ~~~~iPvIDls~~---------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~-~~~~~ 116 (159)
+...||||||+.. +++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ...++
T Consensus 2 ~~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~ 81 (320)
T PTZ00273 2 TRASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHR 81 (320)
T ss_pred CCCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCC
Confidence 4568999999742 4688999999999999999999999999999999999999999999998644 34678
Q ss_pred cccCCCcccc--CCCCCeeeeEeeccC-CC----------CCcCCCCCCCCCCCC
Q 036755 117 GYGLPRISTF--FSKLMWTEGFTILGS-PL----------DHARQLWPHEYDHIN 158 (159)
Q Consensus 117 GY~~~~~~~~--~~~~d~kE~f~~~~~-p~----------~~~~n~WP~~~~~fr 158 (159)
||+..+.+.. ....||+|+|+++.. |. ...+|.||+.+|+||
T Consensus 82 GY~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr 136 (320)
T PTZ00273 82 GYGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWM 136 (320)
T ss_pred CCCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHH
Confidence 9998775543 245799999998642 21 124799999888875
No 18
>PLN02485 oxidoreductase
Probab=99.91 E-value=1.8e-24 Score=179.58 Aligned_cols=111 Identities=24% Similarity=0.392 Sum_probs=90.9
Q ss_pred CCCcceeeCCCh----------------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCC
Q 036755 48 HAAVPVIDLGSP----------------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRS 111 (159)
Q Consensus 48 ~~~iPvIDls~~----------------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~ 111 (159)
...||||||+.. +++++|++||++||||||+||||++++++++++++++||+||.|+|+++...
T Consensus 5 ~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~ 84 (329)
T PLN02485 5 FKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMT 84 (329)
T ss_pred CCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccc
Confidence 468999999631 3688999999999999999999999999999999999999999999998654
Q ss_pred -CCCCccccCCCccccCCCCCeeeeEeeccC--CC--------CCcCCCCCCCCCCCC
Q 036755 112 -PEDFTGYGLPRISTFFSKLMWTEGFTILGS--PL--------DHARQLWPHEYDHIN 158 (159)
Q Consensus 112 -~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~--p~--------~~~~n~WP~~~~~fr 158 (159)
...++||.+.+.+...+..||+|.|.+... +. ...+|.||+.+++||
T Consensus 85 ~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr 142 (329)
T PLN02485 85 PAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFK 142 (329)
T ss_pred CCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHH
Confidence 345789988765544566899999987531 11 134799999888876
No 19
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.91 E-value=5.7e-24 Score=176.87 Aligned_cols=111 Identities=28% Similarity=0.411 Sum_probs=90.0
Q ss_pred CCCCcceeeCCCh---HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCc
Q 036755 47 THAAVPVIDLGSP---QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRI 123 (159)
Q Consensus 47 ~~~~iPvIDls~~---~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~ 123 (159)
....||+|||+.. .++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ..++||.+.+.
T Consensus 11 ~~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~-~~~~GY~~~~~ 89 (332)
T PLN03002 11 KVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN-EKHRGYTPVLD 89 (332)
T ss_pred CCCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC-CCCCCcCcccc
Confidence 3568999999863 5788999999999999999999999999999999999999999999998643 35799998765
Q ss_pred cccC----CCCCeeeeEeeccC-CCC--------CcCCCCCCC--CCCCC
Q 036755 124 STFF----SKLMWTEGFTILGS-PLD--------HARQLWPHE--YDHIN 158 (159)
Q Consensus 124 ~~~~----~~~d~kE~f~~~~~-p~~--------~~~n~WP~~--~~~fr 158 (159)
+... ...||+|+|+++.. |.. +.+|.||+. +|+||
T Consensus 90 e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr 139 (332)
T PLN03002 90 EKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWR 139 (332)
T ss_pred cccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHH
Confidence 4432 23699999998742 211 347999975 67775
No 20
>PLN02997 flavonol synthase
Probab=99.91 E-value=7.9e-24 Score=175.60 Aligned_cols=107 Identities=32% Similarity=0.545 Sum_probs=88.1
Q ss_pred CCCcceeeCCCh---HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCcc
Q 036755 48 HAAVPVIDLGSP---QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRIS 124 (159)
Q Consensus 48 ~~~iPvIDls~~---~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~ 124 (159)
...||||||+.. +++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ..++||.....
T Consensus 30 ~~~IPvIDls~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~~GY~~~~~- 107 (325)
T PLN02997 30 AVDVPVVDLSVSDEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE-EDFEGYKRNYL- 107 (325)
T ss_pred CCCCCeEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC-CCccccCcccc-
Confidence 558999999863 5789999999999999999999999999999999999999999999998643 35789986543
Q ss_pred ccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755 125 TFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN 158 (159)
Q Consensus 125 ~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr 158 (159)
.+..||+|.+.....+. ....|.||+++++||
T Consensus 108 --~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr 140 (325)
T PLN02997 108 --GGINNWDEHLFHRLSPPSIINYKYWPKNPPQYR 140 (325)
T ss_pred --cCCCCccceeEeeecCccccccccCCCCcchHH
Confidence 34568999876543332 234589999888886
No 21
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.90 E-value=1e-23 Score=152.14 Aligned_cols=95 Identities=27% Similarity=0.484 Sum_probs=81.8
Q ss_pred CCCCCCCccCCCCCCCCCC-CCCCCcceeeCCCh--------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHh
Q 036755 27 LKLPDSHAWTLPDHPMADP-LTHAAVPVIDLGSP--------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRL 97 (159)
Q Consensus 27 ~~~p~~~i~~~~~~~~~~~-~~~~~iPvIDls~~--------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~F 97 (159)
..+|..|+++..++|.... ....+||||||+.. +++++|++||++||||||+||||+.++++++++.+++|
T Consensus 13 ~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~F 92 (120)
T PLN03176 13 KTLQASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEF 92 (120)
T ss_pred CCCCHhhcCChhhCcCccccccCCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6899999999998885421 22357999999852 37899999999999999999999999999999999999
Q ss_pred hCCCHHHHhhcCCCCCCCccccCC
Q 036755 98 FALPANQKLLAGRSPEDFTGYGLP 121 (159)
Q Consensus 98 F~LP~eeK~~~~~~~~~~~GY~~~ 121 (159)
|+||.|+|+++...+++..||+..
T Consensus 93 F~LP~e~K~k~~~~~~~~~gy~~~ 116 (120)
T PLN03176 93 FALPPEEKLRFDMSGGKKGGFIVS 116 (120)
T ss_pred HCCCHHHHHhcccCCCccCCcchh
Confidence 999999999998766667899764
No 22
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=99.90 E-value=1.8e-23 Score=174.14 Aligned_cols=108 Identities=34% Similarity=0.500 Sum_probs=86.7
Q ss_pred CCCcceeeCCChHHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCccccC
Q 036755 48 HAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFF 127 (159)
Q Consensus 48 ~~~iPvIDls~~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~ 127 (159)
...||||||+..+..++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ..+||+...... .
T Consensus 24 ~~~iPvIDls~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~--~~~Gy~~~~~~~-~ 100 (335)
T PLN02156 24 PVLIPVIDLTDSDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP--DPFGYGTKRIGP-N 100 (335)
T ss_pred CCCCCcccCCChHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC--CCcccCccccCC-C
Confidence 3479999999877788999999999999999999999999999999999999999999998532 345886532211 2
Q ss_pred CCCCeeeeEeeccCCCC---CcCCCCCCCCCCCC
Q 036755 128 SKLMWTEGFTILGSPLD---HARQLWPHEYDHIN 158 (159)
Q Consensus 128 ~~~d~kE~f~~~~~p~~---~~~n~WP~~~~~fr 158 (159)
+..+|+|+|.+...+.. ...|.||+.+++||
T Consensus 101 ~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr 134 (335)
T PLN02156 101 GDVGWLEYILLNANLCLESHKTTAVFRHTPAIFR 134 (335)
T ss_pred CCCCceeeEeeecCCccccccchhcCccccHHHH
Confidence 34689999988654421 24689998877775
No 23
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=99.90 E-value=7.7e-24 Score=172.00 Aligned_cols=110 Identities=27% Similarity=0.421 Sum_probs=95.3
Q ss_pred CCCcceeeCCCh---------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCC-CCCcc
Q 036755 48 HAAVPVIDLGSP---------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSP-EDFTG 117 (159)
Q Consensus 48 ~~~iPvIDls~~---------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~-~~~~G 117 (159)
...||+|||+.. .++++|++||++||||||+||||+..+++++++++++||+||.|+|.++.+.. ..++|
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rG 82 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRG 82 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccc
Confidence 468999999852 58899999999999999999999999999999999999999999999998653 36899
Q ss_pred ccCCCccccCCCCCeeeeEeeccC-C-------C---CCcCCCCCCCCCCCC
Q 036755 118 YGLPRISTFFSKLMWTEGFTILGS-P-------L---DHARQLWPHEYDHIN 158 (159)
Q Consensus 118 Y~~~~~~~~~~~~d~kE~f~~~~~-p-------~---~~~~n~WP~~~~~fr 158 (159)
|...+.+.+.+..||||.++++.. + . ...+|+|| ..|+||
T Consensus 83 Y~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r 133 (322)
T COG3491 83 YTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLR 133 (322)
T ss_pred cccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHH
Confidence 999998888888899999998753 1 1 35789999 777764
No 24
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=99.89 E-value=2.8e-23 Score=172.08 Aligned_cols=106 Identities=26% Similarity=0.421 Sum_probs=85.0
Q ss_pred CCCCcceeeCCCh------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccC
Q 036755 47 THAAVPVIDLGSP------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGL 120 (159)
Q Consensus 47 ~~~~iPvIDls~~------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~ 120 (159)
++.+||+|||+.. +++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... .+||.+
T Consensus 3 ~~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~---~~gy~~ 79 (321)
T PLN02299 3 KMESFPVIDMEKLNGEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA---SKGLEG 79 (321)
T ss_pred CCCCCCEEECcCCCcccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC---CCCccc
Confidence 4568999999752 5788999999999999999999999999999999999999999999997533 356655
Q ss_pred CCccccCCCCCeeeeEeeccCCCCCcCCCCCCCCCCCC
Q 036755 121 PRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHIN 158 (159)
Q Consensus 121 ~~~~~~~~~~d~kE~f~~~~~p~~~~~n~WP~~~~~fr 158 (159)
...+ .+..||+|.|.+...|. ...+.||+.+++||
T Consensus 80 ~~~~--~~~~d~ke~~~~~~~~~-~~~~~wP~~~~~fr 114 (321)
T PLN02299 80 VQTE--VEDLDWESTFFLRHLPE-SNLADIPDLDDEYR 114 (321)
T ss_pred cccc--CCCcCHHHHcccccCCc-cccccCccccHHHH
Confidence 4322 23569999998764332 24578999888775
No 25
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=99.86 E-value=8.9e-22 Score=161.96 Aligned_cols=102 Identities=27% Similarity=0.455 Sum_probs=78.6
Q ss_pred CcceeeCCCh------HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCc
Q 036755 50 AVPVIDLGSP------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRI 123 (159)
Q Consensus 50 ~iPvIDls~~------~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~ 123 (159)
+||+|||+.. +++++|++||++||||||+||||+.++++++++.+++||+||.++|.. .... ..++...+
T Consensus 2 ~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~-~~~~--~~~~~~~~- 77 (303)
T PLN02403 2 EIPVIDFDQLDGEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY-ESEI--AKALDNEG- 77 (303)
T ss_pred CCCeEeCccCCcccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh-cccc--cCcccccC-
Confidence 6999999752 578999999999999999999999999999999999999999999962 2111 11221111
Q ss_pred cccCCCCCeeeeEeeccCCCCCcCCCCCCCCCCCC
Q 036755 124 STFFSKLMWTEGFTILGSPLDHARQLWPHEYDHIN 158 (159)
Q Consensus 124 ~~~~~~~d~kE~f~~~~~p~~~~~n~WP~~~~~fr 158 (159)
..+..||+|+|.++..|. ...|.||+.+|+||
T Consensus 78 --~~~~~d~kE~~~~~~~p~-~~~~~wP~~~p~fr 109 (303)
T PLN02403 78 --KTSDVDWESSFFIWHRPT-SNINEIPNLSEDLR 109 (303)
T ss_pred --CCCCccHhhhcccccCCc-cchhhCCCCcHHHH
Confidence 123569999999875553 24588998888875
No 26
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.85 E-value=5.5e-21 Score=159.55 Aligned_cols=94 Identities=33% Similarity=0.541 Sum_probs=71.2
Q ss_pred CCCCcceeeCCChHHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCC-C-CC-CCccccCC--
Q 036755 47 THAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGR-S-PE-DFTGYGLP-- 121 (159)
Q Consensus 47 ~~~~iPvIDls~~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~-~-~~-~~~GY~~~-- 121 (159)
....||+|||+.. .+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. . +. ...||...
T Consensus 35 ~~~~IPvIDls~~-~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~ 113 (341)
T PLN02984 35 KDIDIPVIDMECL-DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTPALTP 113 (341)
T ss_pred ccCCCCeEeCcHH-HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCcccccc
Confidence 3567999999865 35899999999999999999999999999999999999999999999752 1 11 12233211
Q ss_pred -Ccccc----CCCCCeeeeEeeccC
Q 036755 122 -RISTF----FSKLMWTEGFTILGS 141 (159)
Q Consensus 122 -~~~~~----~~~~d~kE~f~~~~~ 141 (159)
+.+.. .+..||+|+|+++..
T Consensus 114 ~~~~~~~~~~~~~~D~kE~f~~~~~ 138 (341)
T PLN02984 114 SGKALSRGPQESNVNWVEGFNIPLS 138 (341)
T ss_pred cccccccccccCCCCeeeEEeCcCC
Confidence 11111 124699999998643
No 27
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=99.84 E-value=4.9e-21 Score=157.28 Aligned_cols=86 Identities=30% Similarity=0.504 Sum_probs=72.5
Q ss_pred CCCcceeeCCCh-HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCcccc
Q 036755 48 HAAVPVIDLGSP-QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTF 126 (159)
Q Consensus 48 ~~~iPvIDls~~-~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~ 126 (159)
...||||||+.. +.+++|++||++||||||+||||+.++++++++++++||+||.|+|+++.. ....+||...+.
T Consensus 3 ~~~iPvIDls~~~~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~-~~~~~GY~~~~~--- 78 (300)
T PLN02365 3 EVNIPTIDLEEFPGQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTD-VILGSGYMAPSE--- 78 (300)
T ss_pred cCCCCEEEChhhHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccC-CCCCCCCCCcCC---
Confidence 457999999975 456899999999999999999999999999999999999999999999643 234579986543
Q ss_pred CCCCCeeeeEeec
Q 036755 127 FSKLMWTEGFTIL 139 (159)
Q Consensus 127 ~~~~d~kE~f~~~ 139 (159)
..+++|.|.+.
T Consensus 79 --~~~~~e~~~~~ 89 (300)
T PLN02365 79 --VNPLYEALGLY 89 (300)
T ss_pred --CCCchhheecc
Confidence 24789988775
No 28
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.75 E-value=5.5e-09 Score=84.60 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=50.0
Q ss_pred HHHHHHHhhC-CCHHHHhhcCCCC--CCCccccCCCccc--cCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755 90 VEFQTRRLFA-LPANQKLLAGRSP--EDFTGYGLPRIST--FFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN 158 (159)
Q Consensus 90 ~~~~s~~FF~-LP~eeK~~~~~~~--~~~~GY~~~~~~~--~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr 158 (159)
|.+.+++||+ ||.|+|+++.+.. ..++||+...... ..+..||+|+|.+...|. ...+|.||+++|+||
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~ 75 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYR 75 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHH
Confidence 3578999997 9999999987643 2478996544321 123569999999865554 345799999888875
No 29
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=76.79 E-value=8.2 Score=31.53 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhC
Q 036755 61 AATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFA 99 (159)
Q Consensus 61 ~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~ 99 (159)
..++|.++.++.|.++--|..|--.++.++.+.+.++|.
T Consensus 107 ~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~ 145 (266)
T COG0289 107 QLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLD 145 (266)
T ss_pred HHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHHHhcC
Confidence 345555555566666666665555555555555555554
No 30
>PRK08130 putative aldolase; Validated
Probab=75.91 E-value=3.4 Score=32.16 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=28.5
Q ss_pred CCcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 49 AAVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 49 ~~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
..||++++.. .++++++.+++.+...+.+.|||+
T Consensus 126 g~i~v~~y~~~g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 126 GHVPLIPYYRPGDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred CccceECCCCCChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 3688988754 378889999999999999999996
No 31
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=74.64 E-value=5.6 Score=28.18 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=35.3
Q ss_pred ceeeCCChHHHHHHHHHHHHcCeEEEee-cCCCHHHHHHHHHHHHH
Q 036755 52 PVIDLGSPQAATLIRQACEKWGAFQVTN-HGIPIKLLNQVEFQTRR 96 (159)
Q Consensus 52 PvIDls~~~~~~~l~~A~~~~GFF~l~n-HGI~~eli~~~~~~s~~ 96 (159)
=+||++.++.+....+.|.+.|-=.|++ .|.+++.++.+.+.+++
T Consensus 70 VvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 70 VVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred EEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 3589999998888999999999988885 59998888888776654
No 32
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=73.65 E-value=4.3 Score=30.84 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=27.4
Q ss_pred CcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.+|++++.. .++++++.+++++..-+.|.|||+
T Consensus 120 ~v~v~~~~~~g~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 120 KIPILPFRPAGSVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CEeeecCCCCCcHHHHHHHHHHhccCCEEEEcCCCC
Confidence 688888753 378888999998888899999996
No 33
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=70.43 E-value=6.9 Score=34.00 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=37.2
Q ss_pred CCCCcceeeCCCh---HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhC
Q 036755 47 THAAVPVIDLGSP---QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFA 99 (159)
Q Consensus 47 ~~~~iPvIDls~~---~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~ 99 (159)
+...||.||+++. ...++..+..++.|.+.|.|+ |+.+...+..+..++|.+
T Consensus 46 G~~~IP~i~f~di~~~~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 46 GSSIIPEIDFADIENGGVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp T--SS-EEEHHHHHCT---HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeHHHHhCCCCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 4568999999864 467888999999999877665 888888888888888764
No 34
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=66.51 E-value=6.8 Score=30.79 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=27.0
Q ss_pred CcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.+|++++.. .++++.+.+++.+...+.|.|||+
T Consensus 127 ~v~~~~y~~~gs~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAASGTPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCCCcHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 466666653 378899999999999999999996
No 35
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=61.68 E-value=30 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCe--EEEee-cCCCHHHHHHHHHHHHHhhC
Q 036755 60 QAATLIRQACEKWGA--FQVTN-HGIPIKLLNQVEFQTRRLFA 99 (159)
Q Consensus 60 ~~~~~l~~A~~~~GF--F~l~n-HGI~~eli~~~~~~s~~FF~ 99 (159)
.....+.+++..+|| |+++| ||=....+..+.+..+..+.
T Consensus 90 ~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 90 ALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 467788899999999 66655 88777777776666665554
No 36
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=61.38 E-value=5.4 Score=29.96 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=27.8
Q ss_pred CCcceeeCCC---hHHHHHHHHHHH-HcCeEEEeecCC
Q 036755 49 AAVPVIDLGS---PQAATLIRQACE-KWGAFQVTNHGI 82 (159)
Q Consensus 49 ~~iPvIDls~---~~~~~~l~~A~~-~~GFF~l~nHGI 82 (159)
..+|+++... .+.++.+.++++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPGSEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTTCHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccccchhhhhhhhhhhcCCceEEeecCCce
Confidence 5789998865 356789999999 889999999995
No 37
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=60.60 E-value=24 Score=28.96 Aligned_cols=36 Identities=14% Similarity=-0.045 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhC
Q 036755 63 TLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFA 99 (159)
Q Consensus 63 ~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~ 99 (159)
++|.++ .+.|.++.-|.+|.-.++.++.+.+.++|.
T Consensus 109 ~~l~~~-~~i~~l~apNfSiGv~ll~~~~~~aA~~~~ 144 (275)
T TIGR02130 109 AKLVAD-AKHPAVIAPNMAKQIVAFLAAIEFLAEEFP 144 (275)
T ss_pred HHHHHh-cCCCEEEECcccHHHHHHHHHHHHHHHhhc
Confidence 344333 246777777777777777777777777764
No 38
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=58.13 E-value=11 Score=29.28 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=25.5
Q ss_pred CcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.||++.+.. .++++.+.+++.+...+.+.|||+
T Consensus 124 ~i~~~~y~~~gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 124 NVRCAEYATFGTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CeeeccCCCCChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 466665543 367788888888889999999996
No 39
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=57.01 E-value=12 Score=30.41 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=27.2
Q ss_pred CcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.||++.+.. .++++.+.+++.+...+.+.|||+
T Consensus 179 ~i~vvpy~~pgs~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 179 GVGIVPWMVPGTDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred ceeEecCCCCCCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 577887754 378888999998888999999996
No 40
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=56.12 E-value=16 Score=27.50 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=25.8
Q ss_pred CcceeeCC---ChHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLG---SPQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls---~~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.||++ .. ..++++.+.+++.+.-.+.|.|||+
T Consensus 115 ~ipv~-~~~~~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDIGSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCCCCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 58888 32 2478888999999889999999996
No 41
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=54.58 E-value=15 Score=28.57 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=25.9
Q ss_pred CcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.+|++.+.. .++++++.+++.+...+.+.|||+
T Consensus 122 ~v~~~~y~~~gs~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATFGTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCCCCHHHHHHHHHHhCcCCEEEecCCCC
Confidence 477776543 367888888888888899999996
No 42
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=52.65 E-value=15 Score=28.51 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=25.7
Q ss_pred Ccceee-CCC-hHHHHHHHHHHH-HcCeEEEeecCC
Q 036755 50 AVPVID-LGS-PQAATLIRQACE-KWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvID-ls~-~~~~~~l~~A~~-~~GFF~l~nHGI 82 (159)
.||+++ +.. .++++.+.++++ +..-+.+.|||+
T Consensus 137 ~vpv~~~~~~~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIENHADIPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecCCCCHHHHHHHHHHHhccCCcEEEECCCce
Confidence 478885 433 478888888887 778899999995
No 43
>PLN02775 Probable dihydrodipicolinate reductase
Probab=52.36 E-value=42 Score=27.72 Aligned_cols=28 Identities=11% Similarity=-0.040 Sum_probs=17.4
Q ss_pred HcCeEEEeecCCCHHHHHHHHHHHHHhh
Q 036755 71 KWGAFQVTNHGIPIKLLNQVEFQTRRLF 98 (159)
Q Consensus 71 ~~GFF~l~nHGI~~eli~~~~~~s~~FF 98 (159)
+.|.++.-|.+|.-.++.++.+.+.++|
T Consensus 127 ~i~vv~apNfSiGv~ll~~l~~~aA~~l 154 (286)
T PLN02775 127 GVYAVIAPQMGKQVVAFQAAMEIMAEQF 154 (286)
T ss_pred CccEEEECcccHHHHHHHHHHHHHHHhc
Confidence 3456666666666666666666666665
No 44
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=50.07 E-value=29 Score=29.16 Aligned_cols=47 Identities=13% Similarity=0.016 Sum_probs=34.9
Q ss_pred CCcceeeCCC----hHHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhh
Q 036755 49 AAVPVIDLGS----PQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLF 98 (159)
Q Consensus 49 ~~iPvIDls~----~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF 98 (159)
..+|.||++. .+.+.++.+|+.++|++.+.+-.++.+.+ .+.+++|-
T Consensus 108 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~G~v~~rg~~~~~~~~---~~~~~~~G 158 (366)
T TIGR02409 108 LSLPKFDHEAVMKDDSVLLDWLSAVRDVGIAVLKGAPTKPGAV---EKLGKRIG 158 (366)
T ss_pred ccCCceeHHHHhCCHHHHHHHHHHHHhccEEEEeCCCCCHHHH---HHHHHHhc
Confidence 5688898854 35678899999999999999988876543 44555443
No 45
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=49.83 E-value=17 Score=29.61 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=27.2
Q ss_pred CcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.||++.+.. .++++.+.+++++..-+.+.|||+
T Consensus 177 ~i~vvp~~~pGs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMVPGTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcCCCCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 477777754 478899999999888899999996
No 46
>PRK06755 hypothetical protein; Validated
Probab=49.14 E-value=17 Score=28.46 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=24.7
Q ss_pred CcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.||+|+... .++++.+.++.++...+.|.|||+
T Consensus 136 ~IPiv~~~~~~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKKFADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCchhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 599998754 245566666777778899999996
No 47
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.48 E-value=51 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhh
Q 036755 61 AATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLF 98 (159)
Q Consensus 61 ~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF 98 (159)
.+++|.+++++.|.++..|.++...++.++.+.+...|
T Consensus 98 ~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa~~l 135 (257)
T PRK00048 98 QLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAAKYL 135 (257)
T ss_pred HHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHHHhc
Confidence 45556666667777777777776666666666555555
No 48
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=48.44 E-value=24 Score=26.93 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=25.5
Q ss_pred CcceeeCC--ChHHHHHHHHHHH---HcCeEEEeecCC
Q 036755 50 AVPVIDLG--SPQAATLIRQACE---KWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls--~~~~~~~l~~A~~---~~GFF~l~nHGI 82 (159)
.||+++.. ..++++.+.++++ +...+.|.|||+
T Consensus 126 ~vp~~~~~~gs~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFENTQDIARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecCCCChHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 58888752 2478888888886 367899999996
No 49
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=48.35 E-value=19 Score=27.94 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.5
Q ss_pred cceeeCCC---hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 51 VPVIDLGS---PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 51 iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
+|++.+.. .++++.+.++..+..-+.|.|||+
T Consensus 122 i~~v~y~~~gs~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 122 IPCVPYATFGSTKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred ccccCCCCCChHHHHHHHHHHhhhCCEEehhcCCC
Confidence 56665543 367888888888888999999996
No 50
>PRK06357 hypothetical protein; Provisional
Probab=45.57 E-value=31 Score=26.99 Aligned_cols=32 Identities=28% Similarity=0.643 Sum_probs=22.7
Q ss_pred cceeeCCC---hHHHHHHHHHHHHc------CeEEEeecCC
Q 036755 51 VPVIDLGS---PQAATLIRQACEKW------GAFQVTNHGI 82 (159)
Q Consensus 51 iPvIDls~---~~~~~~l~~A~~~~------GFF~l~nHGI 82 (159)
+|++.+.. .++++.+.+++++. ..+.+.|||+
T Consensus 131 i~~~p~~~~gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 131 IPTLPFAPATSPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred cceecccCCCcHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 56665543 36777788877764 4889999996
No 51
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=44.02 E-value=22 Score=27.76 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.0
Q ss_pred CcceeeCCC---hHHHHHHHHHH--HHcCeEEEeecCC
Q 036755 50 AVPVIDLGS---PQAATLIRQAC--EKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---~~~~~~l~~A~--~~~GFF~l~nHGI 82 (159)
.||++.+.. .+.++++.+++ .+..-+.+.|||+
T Consensus 130 ~ip~~~y~~~g~~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 130 PIPVGPFALIGDEAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred CeeccCCcCCCcHHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 567766543 36778888888 6777899999996
No 52
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=42.60 E-value=82 Score=25.30 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcC--eEEEeecCCCHHHHHHHHHHHHHhh
Q 036755 60 QAATLIRQACEKWG--AFQVTNHGIPIKLLNQVEFQTRRLF 98 (159)
Q Consensus 60 ~~~~~l~~A~~~~G--FF~l~nHGI~~eli~~~~~~s~~FF 98 (159)
+..++|.++|++.| +++--|-.+.-.++.++.+.+.++|
T Consensus 105 e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l 145 (266)
T TIGR00036 105 EDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYL 145 (266)
T ss_pred HHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhc
Confidence 46788888888844 6776777777777887777777766
No 53
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=42.24 E-value=23 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.206 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCeEEEeecCCC
Q 036755 63 TLIRQACEKWGAFQVTNHGIP 83 (159)
Q Consensus 63 ~~l~~A~~~~GFF~l~nHGI~ 83 (159)
+.+..-|.+.||.||.-|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 457888999999999888653
No 54
>PRK06661 hypothetical protein; Provisional
Probab=42.05 E-value=21 Score=28.22 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCeEEEeecCC
Q 036755 60 QAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
+.++.+.+++.+...+.+.|||+
T Consensus 138 ~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 138 KQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred hHHHHHHHHhCCCCEEEECCCCC
Confidence 45788999999999999999996
No 55
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=40.62 E-value=1e+02 Score=22.15 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCeEEEeec-CCCHHHHHHHHHHHHH
Q 036755 60 QAATLIRQACEKWGAFQVTNH-GIPIKLLNQVEFQTRR 96 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nH-GI~~eli~~~~~~s~~ 96 (159)
..++++.+.++++.++++.++ |++...+.++....+.
T Consensus 5 ~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 5 ELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 467889999999988888775 7888888877777654
No 56
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=40.43 E-value=18 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCcceeeCCCh-----HHHHHHHHHHHHcCeEEEeecCC
Q 036755 49 AAVPVIDLGSP-----QAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 49 ~~iPvIDls~~-----~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
..||++++..+ +.++.+.+++.+...+.+.|||+
T Consensus 121 ~~ip~~~~~~~~~~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPETGEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCCccHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 46888887643 45555666666777899999996
No 57
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=40.32 E-value=68 Score=25.81 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=36.8
Q ss_pred CCcceeeCCC---hHHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCC
Q 036755 49 AAVPVIDLGS---PQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFAL 100 (159)
Q Consensus 49 ~~iPvIDls~---~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~L 100 (159)
+++.-+||+. .+..++|++|+.+.|+..+.|-.++. ++..+.+++|-.+
T Consensus 14 aev~g~dl~~~l~~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 14 AQISGIDLTRPLSDNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred eEEeCcccCCcCCHHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 4566677864 36788999999999999999998875 4555566666543
No 58
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=39.72 E-value=17 Score=15.38 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=6.8
Q ss_pred cccCCCCCcc
Q 036755 7 SYKNNPLHLK 16 (159)
Q Consensus 7 ~~~~~~~~~~ 16 (159)
-||+-||-|+
T Consensus 3 pfw~ppiyp~ 12 (12)
T PF08248_consen 3 PFWPPPIYPV 12 (12)
T ss_pred ccCCCCcccC
Confidence 4788887653
No 59
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=39.19 E-value=14 Score=19.68 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=11.5
Q ss_pred EEEeecCCCHHHHHH
Q 036755 75 FQVTNHGIPIKLLNQ 89 (159)
Q Consensus 75 F~l~nHGI~~eli~~ 89 (159)
.||..||++++.+.+
T Consensus 9 rYV~eh~ls~ee~~~ 23 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAE 23 (28)
T ss_pred hhHHhcCCCHHHHHH
Confidence 478899999876654
No 60
>PRK05834 hypothetical protein; Provisional
Probab=38.99 E-value=38 Score=26.05 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=23.6
Q ss_pred CcceeeCCCh-----HHHHHHHHHHHHcC--eEEEeecCC
Q 036755 50 AVPVIDLGSP-----QAATLIRQACEKWG--AFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~~-----~~~~~l~~A~~~~G--FF~l~nHGI 82 (159)
.||++..... ..++.+.+++.+.. .+.|.|||+
T Consensus 121 ~ipv~~~~~~~~~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFDDWYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccchHHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 4777764432 24677888888755 899999995
No 61
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=37.24 E-value=62 Score=26.50 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCe-------EEEeecCCCHHHHHHHHHHHHHhhCCCHHHHhh
Q 036755 60 QAATLIRQACEKWGA-------FQVTNHGIPIKLLNQVEFQTRRLFALPANQKLL 107 (159)
Q Consensus 60 ~~~~~l~~A~~~~GF-------F~l~nHGI~~eli~~~~~~s~~FF~LP~eeK~~ 107 (159)
..+..+.+-|.++|. |-+.|.+=+++.++.+++++++-+..+.++...
T Consensus 67 ~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~ 121 (271)
T KOG1602|consen 67 EALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQGEK 121 (271)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467788899999994 555688889999999999999999887777433
No 62
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=34.96 E-value=61 Score=26.77 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHH
Q 036755 63 TLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTR 95 (159)
Q Consensus 63 ~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~ 95 (159)
..-.+++++.|||.|.| +|..++.++.+...
T Consensus 15 s~Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 15 STALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 34567899999999998 66777777766655
No 63
>PRK07490 hypothetical protein; Provisional
Probab=34.94 E-value=40 Score=26.84 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCeEEEeecCC
Q 036755 60 QAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
+.++.+.+++.+.--+.|.|||+
T Consensus 147 ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 147 EEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred HHHHHHHHHhCcCCEEEECCCCc
Confidence 67888999998888999999996
No 64
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=34.82 E-value=96 Score=26.42 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=36.0
Q ss_pred eCCChHHHHHHHHHHHHcCeEEEeecC------------CCHHHHHHHHHHHHHh
Q 036755 55 DLGSPQAATLIRQACEKWGAFQVTNHG------------IPIKLLNQVEFQTRRL 97 (159)
Q Consensus 55 Dls~~~~~~~l~~A~~~~GFF~l~nHG------------I~~eli~~~~~~s~~F 97 (159)
.+.+.++.+++.+.+++.|+..|.+|+ ++.+-++++.+-.++|
T Consensus 305 ~~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f 359 (364)
T PRK12462 305 RFRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDF 359 (364)
T ss_pred EcCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 455667888899999999999999994 5778888888888887
No 65
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=34.65 E-value=85 Score=24.58 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=28.0
Q ss_pred cc-eeeCCCh---HHHHHHHHHHHHcCe---EEEeecCCCHHHHHHHHHHHH
Q 036755 51 VP-VIDLGSP---QAATLIRQACEKWGA---FQVTNHGIPIKLLNQVEFQTR 95 (159)
Q Consensus 51 iP-vIDls~~---~~~~~l~~A~~~~GF---F~l~nHGI~~eli~~~~~~s~ 95 (159)
.| +|.++.. +++.++.+.+.++|| +.|.+||=....++.+.+..+
T Consensus 73 fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~ 124 (237)
T PF02633_consen 73 FPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELR 124 (237)
T ss_dssp STT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHH
T ss_pred CCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHH
Confidence 44 6667642 678888999999998 444568876655655544433
No 66
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=34.00 E-value=49 Score=25.54 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=24.7
Q ss_pred CcceeeCC--ChHHHHHHHHHHHHcC---eEEEeecCC
Q 036755 50 AVPVIDLG--SPQAATLIRQACEKWG---AFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls--~~~~~~~l~~A~~~~G---FF~l~nHGI 82 (159)
.+|++.-. ..++++.+.+++++.. .+.|.|||+
T Consensus 134 ~vp~~~~~~~~~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 134 VVPIFDNDQDIARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred EEeeecCCCCHHHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 56666542 2468888999988864 799999996
No 67
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=33.74 E-value=67 Score=19.85 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcC--eEEEe------ecCCCHHHHHHHHHHHHH
Q 036755 60 QAATLIRQACEKWG--AFQVT------NHGIPIKLLNQVEFQTRR 96 (159)
Q Consensus 60 ~~~~~l~~A~~~~G--FF~l~------nHGI~~eli~~~~~~s~~ 96 (159)
+..+.|.+.++++| .+.+. -|||+.+.+.++++..++
T Consensus 24 ~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 24 EQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 56778888888887 56554 467888888888776554
No 68
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=33.12 E-value=89 Score=18.39 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhCCC
Q 036755 61 AATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALP 101 (159)
Q Consensus 61 ~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~LP 101 (159)
.+..|...+...||....-.|+-...+.++...-.+.+.|+
T Consensus 4 ~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 4 DVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 46778889999999855555666665666555555666654
No 69
>PRK15331 chaperone protein SicA; Provisional
Probab=32.69 E-value=44 Score=25.36 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHhhC
Q 036755 60 QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFA 99 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~FF~ 99 (159)
+.++.|.+|..+ |==.-.-|||+++.++.++..+.+||.
T Consensus 11 ~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~ 49 (165)
T PRK15331 11 RVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYN 49 (165)
T ss_pred HHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 567778888776 432334699999999999999999995
No 70
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=32.45 E-value=65 Score=25.36 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=22.9
Q ss_pred CcceeeCCC---------hHHHHHHHHHHHHc-------CeEEEeecCC
Q 036755 50 AVPVIDLGS---------PQAATLIRQACEKW-------GAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls~---------~~~~~~l~~A~~~~-------GFF~l~nHGI 82 (159)
.||+++... .+.++.+.+++++. .-+.+.|||+
T Consensus 124 ~ip~~~~~~~~~~~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~ 172 (231)
T PRK08193 124 DIPCTRKMTDEEINGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGP 172 (231)
T ss_pred CcceecCCCcccccccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 577766421 24677788888764 4788999996
No 71
>PRK07044 aldolase II superfamily protein; Provisional
Probab=31.67 E-value=56 Score=26.11 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=24.9
Q ss_pred CcceeeCC----ChHHHHHHHHHHHHcCeEEEeecCC
Q 036755 50 AVPVIDLG----SPQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 50 ~iPvIDls----~~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.||++++. ..+.++.+.+++.+..-+.|.|||+
T Consensus 138 ~i~~~~y~~~~~~~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 138 RLAYHDYEGIALDLDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CceeeCCCCCcCCHHHHHHHHHHhccCCEEEECCCCc
Confidence 46666654 2356788888888888999999996
No 72
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=30.61 E-value=1.8e+02 Score=21.13 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCeEEEeec-CCCHHHHHHHHHHHHH
Q 036755 60 QAATLIRQACEKWGAFQVTNH-GIPIKLLNQVEFQTRR 96 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nH-GI~~eli~~~~~~s~~ 96 (159)
+.++++.+.+++..+++++++ |++...+.++....+.
T Consensus 7 ~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 7 EIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 456778888888877766664 7887777777776664
No 73
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=29.07 E-value=91 Score=20.29 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHH
Q 036755 59 PQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQ 93 (159)
Q Consensus 59 ~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~ 93 (159)
.+.++.|.++++..||..=..||.-.+-..+++..
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~ 49 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALRA 49 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHH
Confidence 47899999999999998888888776655554443
No 74
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=29.06 E-value=1.5e+02 Score=22.76 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCeEEEeecCCCHHHHHHHHHHHHHh
Q 036755 60 QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRL 97 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~~s~~F 97 (159)
+.++++++++.+.||+.|.+-.++.+...+ .+..|
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~~~---~~~~~ 58 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQFEA---LASRL 58 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHHHH---HHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHHHH---HHHhh
Confidence 378899999999999999988876554444 55554
No 75
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.70 E-value=89 Score=17.02 Aligned_cols=28 Identities=11% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCeEEEeecCCCHHHHHHHHH
Q 036755 62 ATLIRQACEKWGAFQVTNHGIPIKLLNQVEF 92 (159)
Q Consensus 62 ~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~ 92 (159)
+.+|.+.|++.| +...|--.++++++.+
T Consensus 6 v~eLk~~l~~~g---L~~~G~K~~Li~Rl~~ 33 (35)
T PF02037_consen 6 VAELKEELKERG---LSTSGKKAELIERLKE 33 (35)
T ss_dssp HHHHHHHHHHTT---S-STSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CCCCCCHHHHHHHHHH
Confidence 567889999888 4667777788888765
No 76
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=27.40 E-value=1.7e+02 Score=21.69 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCeEEEe-ecCCCHHHHHHHHHHHH
Q 036755 60 QAATLIRQACEKWGAFQVT-NHGIPIKLLNQVEFQTR 95 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~-nHGI~~eli~~~~~~s~ 95 (159)
+.+++|.+.+.++-.++|+ .+|++...++++.+..+
T Consensus 5 ~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr 41 (163)
T cd05796 5 KLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWK 41 (163)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhc
Confidence 4577888888887766665 46888888888887765
No 77
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=25.61 E-value=2.5e+02 Score=20.85 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCeEEEeec-CCCHHHHHHHHHHHHH
Q 036755 60 QAATLIRQACEKWGAFQVTNH-GIPIKLLNQVEFQTRR 96 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nH-GI~~eli~~~~~~s~~ 96 (159)
+.+++|.+.+.++-.++++++ |++...+.++....+.
T Consensus 8 ~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 8 EIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 356677777777766666554 6777766666666554
No 78
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.07 E-value=1.9e+02 Score=22.25 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCeEEEe
Q 036755 61 AATLIRQACEKWGAFQVT 78 (159)
Q Consensus 61 ~~~~l~~A~~~~GFF~l~ 78 (159)
...++.++|+..||..+.
T Consensus 82 s~~~~ik~Ak~~Gf~I~L 99 (187)
T COG4185 82 SILELIKTAKAAGFYIVL 99 (187)
T ss_pred hHHHHHHHHHhCCeEEEE
Confidence 456677899999996554
No 79
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=24.59 E-value=1.3e+02 Score=20.08 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=22.6
Q ss_pred cceeeCCChHHHHHHHHHHHHcCeEEEeecCCCHHHHHHH
Q 036755 51 VPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQV 90 (159)
Q Consensus 51 iPvIDls~~~~~~~l~~A~~~~GFF~l~nHGI~~eli~~~ 90 (159)
++.||-+......++.+.|+..| ..+.-.|+.++..+.+
T Consensus 51 v~~iDssg~~~l~~~~~~~~~~g-~~l~l~g~~~~v~~~l 89 (109)
T cd07041 51 VPVIDSAVARHLLRLARALRLLG-ARTILTGIRPEVAQTL 89 (109)
T ss_pred CchhcHHHHHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHH
Confidence 33344333456666777777777 4556667776654433
No 80
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=24.12 E-value=90 Score=22.42 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCeEEEeecCCC
Q 036755 60 QAATLIRQACEKWGAFQVTNHGIP 83 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nHGI~ 83 (159)
.+...|.+++|.|||-.+.++.-.
T Consensus 36 ~Fg~aL~~~LR~~GYaV~e~~~~~ 59 (121)
T PF07283_consen 36 PFGQALENALRAKGYAVIEDDPPD 59 (121)
T ss_pred hHHHHHHHHHHhcCcEEEecCCcc
Confidence 688899999999999999887654
No 81
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=23.89 E-value=2.2e+02 Score=21.43 Aligned_cols=37 Identities=8% Similarity=0.159 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCeEEEee-cCCCHHHHHHHHHHHHH
Q 036755 60 QAATLIRQACEKWGAFQVTN-HGIPIKLLNQVEFQTRR 96 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~n-HGI~~eli~~~~~~s~~ 96 (159)
+.+++|.+.+.++..++|++ .|++...++++.+..+.
T Consensus 5 ~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 5 EYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 35677888888877666664 67887777777777663
No 82
>PRK06208 hypothetical protein; Provisional
Probab=23.58 E-value=71 Score=26.07 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCeEEEeecCC
Q 036755 60 QAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
++++.+.+++++..-+.+.|||+
T Consensus 178 ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 178 SEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred HHHHHHHHHhccCCEEEECCCCc
Confidence 67888999999999999999996
No 83
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=22.88 E-value=1.2e+02 Score=20.41 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHhh
Q 036755 84 IKLLNQVEFQTRRLFALPANQKLL 107 (159)
Q Consensus 84 ~eli~~~~~~s~~FF~LP~eeK~~ 107 (159)
.|+++.+...-..|.+||.|.|..
T Consensus 20 sEVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHH
Confidence 367788888888899999988764
No 84
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=22.71 E-value=2.4e+02 Score=22.92 Aligned_cols=50 Identities=14% Similarity=-0.025 Sum_probs=34.7
Q ss_pred CCCcceeeCCCh----HHHHHHHHHHHHcCeEEEeecCCCHH---HHHHHHHHHHHh
Q 036755 48 HAAVPVIDLGSP----QAATLIRQACEKWGAFQVTNHGIPIK---LLNQVEFQTRRL 97 (159)
Q Consensus 48 ~~~iPvIDls~~----~~~~~l~~A~~~~GFF~l~nHGI~~e---li~~~~~~s~~F 97 (159)
..+.-+|+||+. +.+++=..|+.+-+|+.+.-..++.. .+.++++..+++
T Consensus 127 ~hDF~~ISLSDlLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~ 183 (249)
T COG1010 127 GHDFCVISLSDLLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILREH 183 (249)
T ss_pred ccceEEEEhHhcCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHHHh
Confidence 456778888873 66666566777789999888888864 566666555543
No 85
>PRK06486 hypothetical protein; Provisional
Probab=22.53 E-value=74 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHcCeEEEeecCC
Q 036755 59 PQAATLIRQACEKWGAFQVTNHGI 82 (159)
Q Consensus 59 ~~~~~~l~~A~~~~GFF~l~nHGI 82 (159)
.+.++.+.+++.+...+.|.|||+
T Consensus 162 ~ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 162 AAEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred hhHHHHHHHHhCcCCEEEECCCCC
Confidence 367888999999989999999996
No 86
>PLN02452 phosphoserine transaminase
Probab=20.99 E-value=2.3e+02 Score=23.90 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHcCeEEEeecC------------CCHHHHHHHHHHHHHh
Q 036755 58 SPQAATLIRQACEKWGAFQVTNHG------------IPIKLLNQVEFQTRRL 97 (159)
Q Consensus 58 ~~~~~~~l~~A~~~~GFF~l~nHG------------I~~eli~~~~~~s~~F 97 (159)
..+.-+++.+.+++.||..+.+|. ++.+-++++.+..++|
T Consensus 309 ~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f 360 (365)
T PLN02452 309 GSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 360 (365)
T ss_pred CchhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHH
Confidence 335678899999999999999993 6788899999888887
No 87
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=20.85 E-value=2.7e+02 Score=23.23 Aligned_cols=37 Identities=14% Similarity=0.376 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCeEEEee-cCCCHHHHHHHHHHHHH
Q 036755 60 QAATLIRQACEKWGAFQVTN-HGIPIKLLNQVEFQTRR 96 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~n-HGI~~eli~~~~~~s~~ 96 (159)
+.+++|.+.+.++..++|++ +|++...++++++..+.
T Consensus 10 ~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 10 EEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 46778888888888777776 58888888888877764
No 88
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=20.71 E-value=3.4e+02 Score=20.51 Aligned_cols=37 Identities=8% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCeEEEee-cCCCHHHHHHHHHHHHH
Q 036755 60 QAATLIRQACEKWGAFQVTN-HGIPIKLLNQVEFQTRR 96 (159)
Q Consensus 60 ~~~~~l~~A~~~~GFF~l~n-HGI~~eli~~~~~~s~~ 96 (159)
+.++.|.+.+.+...|.+++ +|++...+.++....++
T Consensus 10 ~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 10 ELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 46677888888776665555 68988888888887775
No 89
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.66 E-value=1.6e+02 Score=15.82 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCeEEEeecCCCHHHHHHHHH
Q 036755 62 ATLIRQACEKWGAFQVTNHGIPIKLLNQVEF 92 (159)
Q Consensus 62 ~~~l~~A~~~~GFF~l~nHGI~~eli~~~~~ 92 (159)
..+|++.|+..| +...|.-.++++++.+
T Consensus 6 ~~~Lk~~l~~~g---l~~~G~K~~Lv~Rl~~ 33 (35)
T smart00513 6 VSELKDELKKRG---LSTSGTKAELVDRLLE 33 (35)
T ss_pred HHHHHHHHHHcC---CCCCCCHHHHHHHHHH
Confidence 467888888887 3567777777777654
No 90
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=20.53 E-value=72 Score=23.24 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=16.2
Q ss_pred eecCCCHHHHHHHHHHHH
Q 036755 78 TNHGIPIKLLNQVEFQTR 95 (159)
Q Consensus 78 ~nHGI~~eli~~~~~~s~ 95 (159)
.+|||..+.++.+++.++
T Consensus 114 ~~h~it~e~id~LY~~ak 131 (133)
T PF09440_consen 114 ENHGITPEMIDALYKYAK 131 (133)
T ss_pred HhcCCCHHHHHHHHHHhC
Confidence 899999999999998764
Done!