BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036756
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 306 bits (785), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 225/357 (63%), Gaps = 44/357 (12%)
Query: 3 QLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNG 62
+L+R+EL +GI+Y +P A TG++ +G+G P+ LRADMDALPIQE VEWEHKSK G
Sbjct: 52 KLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAG 111
Query: 63 KMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQG 122
KMHACGHD H TMLLGAA++L + + L+GTV L+FQP EE GA M +EGAL+ +
Sbjct: 112 KMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEA 171
Query: 123 IFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILAL 182
IFG+H++ +P G SR G LAG+ F AVI GKGGHAA+P T DPV+AAS +L+L
Sbjct: 172 IFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSL 231
Query: 183 QQIVSRETDPLEARVIEM-----------------------------------------Q 201
QQ+VSRETDPL+++V+ + Q
Sbjct: 232 QQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITIGGTLRAFTGFTQLQQRVKEVITKQ 291
Query: 202 AAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLG-EANVHLLPMAMGAEDFS 260
AAVH+C+A+++ P P TVN++++Y+ KKV LLG EA V P+ MG+EDFS
Sbjct: 292 AAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPV-MGSEDFS 350
Query: 261 FYSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDDHA 317
++++ + ++G ++ET HSP I+EDVLP GAA+HA++A+ YL + A
Sbjct: 351 YFAETIPGHFSLLGMQDET-NGYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKA 406
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 162/335 (48%), Gaps = 45/335 (13%)
Query: 19 PFAKTGIVASV-GSGVQPWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLL 77
P KTG++A + G P +RAD+DALPIQE SK +G HACGHD HT ++
Sbjct: 73 PQLKTGVIAEIKGREDGPVIAIRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASII 132
Query: 78 GAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQGIFGLHVAPELPTGTI 137
G A LL QR+ LKGTV+ +FQP EE GA +++ G L IFG H P+LP GTI
Sbjct: 133 GTAXLLNQRRAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTI 192
Query: 138 GSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILALQQIVSRETDPLEARV 197
G + GP+ A RF VI+GKGGHA++P+ + DP+ AA I LQ +VSR L+ V
Sbjct: 193 GVKEGPLXASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAV 252
Query: 198 IEM---QAAVH--------QCSATLDFMEEKLR--------------------------- 219
+ + QA + T+ +++ R
Sbjct: 253 VSITRVQAGTSWNVIPDQAEXEGTVRTFQKEARQAVPEHXRRVAEGIAAGYGAQAEFKWF 312
Query: 220 PYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAEDFSFYSQKMAAALFMIGTRNET 279
PY +V ++ + +A + LG VH + G EDF+ Y +K+ GT
Sbjct: 313 PYLPSVQNDGTFLNAASEAAARLGYQTVH-AEQSPGGEDFALYQEKIPGFFVWXGTNGTE 371
Query: 280 LKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLD 314
H P +DE+ L + + A +A+ L+
Sbjct: 372 -----EWHHPAFTLDEEALTVASQYFAELAVIVLE 401
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 153/336 (45%), Gaps = 52/336 (15%)
Query: 24 GIVASVGSGVQP--WFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLLGAAR 81
GI ++ SG +P +RAD DALPI E S+N G MHACGHD HT +L A
Sbjct: 59 GIKVTIDSG-KPGKTLAIRADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAE 117
Query: 82 LLKQRKDRLKGTVKLVFQPGEE-SYGGAYHMIKEGALEKFQGIFGLHVAPELPTGTIGSR 140
L + KD G V ++ QP EE GGA MI+ G L+ + G+HV + TG + R
Sbjct: 118 TLAEMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYR 177
Query: 141 PGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILALQQIVSRETDPLEA----- 195
PG + G F ++GKGGH + PH D ++A S+ + ALQ +VSR P E
Sbjct: 178 PGYVQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTI 237
Query: 196 -------------RVIEMQAAVHQCS-ATLDFMEEKLR--------------------PY 221
V+E++ V + AT +E++++ Y
Sbjct: 238 GSFDGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIKRLSKGLEDMYGVTCTLEYNDDY 297
Query: 222 PATVNDEEMYEHAKKVGTSLLGEAN----VHLLPMAMGAEDFSFYSQKMAAALFMIGTRN 277
PA ND E E+ K L EAN V + +EDF++Y+++ +A G
Sbjct: 298 PALYNDPEFTEYVAKT----LKEANLDFGVEMCEPQPPSEDFAYYAKERPSAFIYTGAAV 353
Query: 278 ETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYL 313
E + + H P I E L I A V + YL
Sbjct: 354 ENGE-IYPHHHPKFNISEKSLLISAEAVGTVVLDYL 388
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 24 GIVASVGSGV-QPWFGLRADMDALPIQEMVEWEHK-------SKNNGKMHACGHDVHTTM 75
G+VA++ +G P R D DAL + E + H+ S N G HACGHD HT +
Sbjct: 98 GVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAI 157
Query: 76 LLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQGIFGLHVAPELPTG 135
LG A +LKQ +L G +KL+FQP EE GA + G ++ +H+ +P G
Sbjct: 158 GLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAG 217
Query: 136 TIGSRPGPMLAGSMRFLAVIEGKGGHA 162
T+ G + +F G HA
Sbjct: 218 TVVC-GGDNFXATTKFDVQFSGVAAHA 243
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 23 TGIVASVGSGVQ-PWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLLGAAR 81
TG +A+ SG+ P G A+ DALP G HACGH++ T + A
Sbjct: 62 TGFIATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHNIIGTASVLGAI 107
Query: 82 LLKQRKDRLKGTVKLVFQPGEE 103
LKQ D++ G V ++ P EE
Sbjct: 108 GLKQVIDQIGGKVVVLGCPAEE 129
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 16/200 (8%)
Query: 3 QLVRNELASLGIEYTW-PFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKN- 60
Q++ L LG + W PF T + + +P D +P + +W +
Sbjct: 27 QIIAERLEKLGFQIEWMPFNDTLNLWAKHGTSEPVIAFAGHTDVVPTGDENQWSSPPFSA 86
Query: 61 ---NGKMHACGH-DVHTT---MLLGAARLLKQRKDRLKGTVKLVFQPGEESYG--GAYHM 111
+G ++ G D+ + M++ A +K + KGT+ L+ EE+ G H+
Sbjct: 87 EIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNH-KGTIALLITSDEEATAKDGTIHV 145
Query: 112 IKEGALEKFQGIFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDP 171
+ E + + + I V +G GS+ I+G GH A PH +P
Sbjct: 146 V-ETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGSITGNLYIQGIQGHVAYPHLAENP 204
Query: 172 VLAASFAILALQQIVSRETD 191
+ A+ L LQ++ + + D
Sbjct: 205 IHKAA---LFLQELTTYQWD 221
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 147 GSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILALQQIVSRE 189
GS+ ++GK GH A PH +PV + A+L L Q V E
Sbjct: 183 GSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDE 225
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 25 IVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLLGAARLLK 84
IV VG G ++ DA P MVEW HK +MH G + + + A ++K
Sbjct: 161 IVGEVGLGT-----IKNPEDAAP---MVEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIK 212
Query: 85 QRKD 88
+ D
Sbjct: 213 TKPD 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,297,617
Number of Sequences: 62578
Number of extensions: 380237
Number of successful extensions: 870
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 13
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)