BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036757
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C754|VPS52_MOUSE Vacuolar protein sorting-associated protein 52 homolog OS=Mus
musculus GN=Vps52 PE=2 SV=1
Length = 723
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 202/375 (53%), Gaps = 54/375 (14%)
Query: 36 EEDASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYI 95
E D + D+ L+ ++ ++ ++V L G LR Y+K VE L+Q+E SI+DYI
Sbjct: 44 ELDITSDEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYI 103
Query: 96 KESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKV 155
+ES+N+ SLH+QI CDA+L +ME +L FQ+++ SISS+I+ LQE+S M ++L+NR+
Sbjct: 104 QESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQA 163
Query: 156 AESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKL 215
KL + V+ +++P +V I++ P ++ L+ L K
Sbjct: 164 VRGKLGELVDGLVVPSALVTAILEAPVTEP-----------------RFLEQLQELDAKA 206
Query: 216 KFIGVDPMVKTSKALKDVQPELEKLRQKAVSKV--------------------------- 248
+ + T+ A DV+ L++LR KAV+K+
Sbjct: 207 AAVREQEAMGTA-ACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQAALLK 265
Query: 249 ---YYFFLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQL-DIATSSDLIGVE 304
+Y FL G+ + E+R Y++T++K+ +++R+Y+ L K+Q ++A DL+GVE
Sbjct: 266 YRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYVGRLMKVQYEEVAEKDDLMGVE 325
Query: 305 -ARSTGLFSRGREPLKNRSAVFALGDRINILK--EIDQPALIPHIAEASSLKYPYEVLFR 361
G FS + L++R+ +F LG R ++ E++ P L+PH A+ +YP+E LFR
Sbjct: 326 DTAKKGFFS--KPSLRSRNTIFTLGTRGTVISPAELEAPILVPHTAQRGEQRYPFEALFR 383
Query: 362 SLHKLLMDTATSEYL 376
S H L+D + EYL
Sbjct: 384 SQHYALLDNSCREYL 398
>sp|Q8N1B4|VPS52_HUMAN Vacuolar protein sorting-associated protein 52 homolog OS=Homo
sapiens GN=VPS52 PE=1 SV=1
Length = 723
Score = 199 bits (505), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 203/375 (54%), Gaps = 54/375 (14%)
Query: 36 EEDASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYI 95
E D + D+ L+ ++ ++ ++V L G LR Y+K VE L+Q+E SI+DYI
Sbjct: 44 ELDITSDEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYI 103
Query: 96 KESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKV 155
+ES+N+ SLH+QI CDA+L +ME +L FQ+++ SISS+I+ LQE+S M ++L+NR+
Sbjct: 104 QESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQA 163
Query: 156 AESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKL 215
KL + V+ +++P +V I++ P ++ L+ L K
Sbjct: 164 VRGKLGELVDGLVVPSALVTAILEAPVTEP-----------------RFLEQLQELDAKA 206
Query: 216 KFIGVDPMVKTSKALKDVQPELEKLRQKAVSKV--------------------------- 248
+ + + + A DV+ L++LR KAV+K+
Sbjct: 207 AAVR-EQEARGTAACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQTALLK 265
Query: 249 ---YYFFLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQL-DIATSSDLIGVE 304
+Y FL G+ + E+R Y++T++K+ +++R+Y+ L K+Q ++A DL+GVE
Sbjct: 266 YRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVE 325
Query: 305 -ARSTGLFSRGREPLKNRSAVFALGDRINILK--EIDQPALIPHIAEASSLKYPYEVLFR 361
G FS + L++R+ +F LG R +++ E++ P L+PH A+ +YP+E LFR
Sbjct: 326 DTAKKGFFS--KPSLRSRNTIFTLGTRGSVISPTELEAPILVPHTAQRGEQRYPFEALFR 383
Query: 362 SLHKLLMDTATSEYL 376
S H L+D + EYL
Sbjct: 384 SQHYALLDNSCREYL 398
>sp|Q5TJF0|VPS52_CANFA Vacuolar protein sorting-associated protein 52 homolog OS=Canis
familiaris GN=VPS52 PE=3 SV=1
Length = 723
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 203/375 (54%), Gaps = 54/375 (14%)
Query: 36 EEDASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYI 95
E D S D+ L+ ++ ++ ++V L G LR Y+K VE L+Q+E SI+DYI
Sbjct: 44 ELDISSDEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYI 103
Query: 96 KESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKV 155
+ES+N+ SLH+QI CDA+L +ME +L FQ+++ SISS+I+ LQE+S M ++L+NR+
Sbjct: 104 QESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQA 163
Query: 156 AESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKL 215
KL + V+ +I+P ++ I++ P ++ L+ L K
Sbjct: 164 VRGKLGELVDGLIVPSALIMAILEAPVTEP-----------------RFLEQLQELDAKA 206
Query: 216 KFIGVDPMVKTSKALKDVQPELEKLRQKAVSKV--------------------------- 248
+ + + + A DV+ L++LR KAV+K+
Sbjct: 207 AAVR-EQEARGTAACADVRGILDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQTALLK 265
Query: 249 ---YYFFLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQL-DIATSSDLIGVE 304
+Y FL G+ + E+R Y++T++K+ +++R+Y+ L K+Q ++A DL+GVE
Sbjct: 266 YRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVE 325
Query: 305 -ARSTGLFSRGREPLKNRSAVFALGDRINILK--EIDQPALIPHIAEASSLKYPYEVLFR 361
G FS + L++R+ +F LG R +++ E++ P L+PH A+ +YP+E LFR
Sbjct: 326 DTAKKGFFS--KPSLRSRNTIFTLGTRGSVISPTELEAPILVPHTAQRGEQRYPFEALFR 383
Query: 362 SLHKLLMDTATSEYL 376
S H L+D + EYL
Sbjct: 384 SQHYALLDNSCREYL 398
>sp|O55166|VPS52_RAT Vacuolar protein sorting-associated protein 52 homolog OS=Rattus
norvegicus GN=Vps52 PE=2 SV=2
Length = 723
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 201/375 (53%), Gaps = 54/375 (14%)
Query: 36 EEDASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYI 95
E D + D+ L+ ++ ++ ++V L G LR Y+K VE L+Q+E SI+DYI
Sbjct: 44 ELDITSDEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYI 103
Query: 96 KESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKV 155
+ES+N+ SLH+QI CDA+L +ME +L FQ+++ SIS +I+ LQE+S M ++L+NR+
Sbjct: 104 QESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISCEIRTLQEQSGAMNIRLRNRQA 163
Query: 156 AESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKL 215
KL + V+ +++P +V I++ P ++ L+ L K
Sbjct: 164 VRGKLGELVDGLVVPSALVTAILEAPVTEP-----------------RFLEQLQELDAKA 206
Query: 216 KFIGVDPMVKTSKALKDVQPELEKLRQKAVSKV--------------------------- 248
+ + + + A DV+ L++LR KAV+K+
Sbjct: 207 AAVR-EQEARGTAACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQTALLK 265
Query: 249 ---YYFFLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQL-DIATSSDLIGVE 304
+Y FL G+ + EVR Y++T++K+ +++R+Y+ L K+Q ++A DL+GVE
Sbjct: 266 YRFFYQFLLGNERATAKEVRDEYVETLSKIYLSYYRSYVGRLMKVQYEEVAEKDDLMGVE 325
Query: 305 -ARSTGLFSRGREPLKNRSAVFALGDRINILK--EIDQPALIPHIAEASSLKYPYEVLFR 361
G FS + L++R+ +F LG R ++ E++ P L+PH A+ +YP+E LFR
Sbjct: 326 DTAKKGFFS--KPSLRSRNTIFTLGTRGAVISPAELEAPILVPHTAQRGEQRYPFEALFR 383
Query: 362 SLHKLLMDTATSEYL 376
S H L+D + EYL
Sbjct: 384 SQHYALLDNSCREYL 398
>sp|G5EFV8|VPS52_CAEEL Vacuolar protein sorting-associated protein 52 homolog
OS=Caenorhabditis elegans GN=vps-52 PE=1 SV=2
Length = 702
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 175/381 (45%), Gaps = 59/381 (15%)
Query: 36 EEDASGDDISLEGLEQELEECKNHD--VVANILSKGTTLREYTKGVENNLRQVELDSIQD 93
+ +A+ ++ LE L + + D +V ++ G L E V L + S+Q
Sbjct: 10 KSEANDRSFTISSLEFCLSQLRKADPNLVKKAIASGDGLTESKNDVSTRLSEAHRYSVQQ 69
Query: 94 YIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNR 153
+ S+ L LH+Q+ CD + +++ L FQ +GSI D+K LQ +S + +L+NR
Sbjct: 70 CLDNSEQLAQLHNQLVHCDNVFERLQATLYSFQDNLGSIGQDMKNLQLQSHHIHQELENR 129
Query: 154 KVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEE-YMRSLEILS 212
+ +L++FV+DI + M+ I D + N+ ++ +L L
Sbjct: 130 QKVRVELSQFVDDIAVSQTMMKTINDTD------------------ANDRGFLEALHELH 171
Query: 213 KKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKV------------------------ 248
K+ I + + A+ D P LE L+ KAV KV
Sbjct: 172 HKITLI-LQRGNGDAVAVNDTMPILEGLKLKAVVKVREWLLQKMFQFRKPLSNYQVFQHQ 230
Query: 249 ------YYFFLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQL-DIATSSDLI 301
+Y FL H E++ YIDT++K+ +F+AY L KL + D+AT D +
Sbjct: 231 LLKCRFFYEFLLHHDLISAKELQDEYIDTISKMFFTYFKAYATRLFKLAMKDVATKEDAL 290
Query: 302 GV--EARSTGL---FSRGREPLKNRSAVFALGDRINILKEIDQPALI-PHIAEASSLKYP 355
G A+ GL FS + ++N++ VF++G R IL + ALI PH A + Y
Sbjct: 291 GSIDFAKPAGLGAIFSSKQHVVRNKATVFSIGQRHQILSDDFLGALIVPHAATQNHQSYQ 350
Query: 356 YEVLFRSLHKLLMDTATSEYL 376
+E LFRS+ +D + EYL
Sbjct: 351 FEALFRSIQLAFVDHYSHEYL 371
>sp|Q9UST3|VPS52_SCHPO Vacuolar protein sorting-associated protein 52
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps52 PE=3 SV=1
Length = 508
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 141/302 (46%), Gaps = 32/302 (10%)
Query: 106 DQIRDCDAILSQMETLLSG---FQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAK 162
D + D++ S + +LS FQ ++ +SDI + E+S + + L N K ES L
Sbjct: 15 DDLNKLDSLKSVLNDVLSSLERFQVDLDVATSDIYKVSERSNKIQVNLNNLKAVESALGA 74
Query: 163 FVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEE------YMRSLEI------ 210
++ I+PP ++ I G+ +P + L +F++ E+ SL+I
Sbjct: 75 EIDGAILPPDLIKTISTGDMDHPSWNSALEKLTSFLEGGEDDSSLGNMFNSLQINKDQKK 134
Query: 211 LSKKLKFIGVDP----MVKTSKALKDVQPELEKLRQKAV--SKVYYFFLKGHGKEIYNEV 264
L KL+ ++ +V T K + ++ +R+ + +K YY FL +++ E+
Sbjct: 135 LVDKLRDKAIERIRNYIVVTIKMFRQAFVDVFPIRKHRLIANKNYYLFLFKFNRKLALEL 194
Query: 265 RAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVEARSTGLF--SRG-REPLKNR 321
+ AYI+TMN HF Y + L+K+ + + I VE GLF S+G ++ N+
Sbjct: 195 QRAYINTMNWFYLYHFEQYSRFLDKVHV---LKGETIRVEEDRKGLFNLSKGAQQSYGNQ 251
Query: 322 SAVFALGDRINILKEIDQPALIPHIAEASSLKYPYEVLFRSLHKLLMDTATSEYLVALLF 381
L + + + + + HI SS +Y E ++ S +L + +SEY A L
Sbjct: 252 MLSVNLRPQDFDMNSVLTASTMHHI--ESSPQY-IERVYCSWELVLTEHVSSEY--AFLL 306
Query: 382 EF 383
E+
Sbjct: 307 EY 308
>sp|P39904|VPS52_YEAST Vacuolar protein sorting-associated protein 52 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS52 PE=1
SV=2
Length = 641
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 126/314 (40%), Gaps = 54/314 (17%)
Query: 114 ILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRM 173
I+ Q+ L+ F + + + D+ +++KS ++ L+ + ++ V D++IPP +
Sbjct: 73 IIPQLIDYLTEFTNRLSNYTQDLDFIKKKSNELQSLLEYNSTKLAHISPMVNDLMIPPEL 132
Query: 174 VDIIVDG---ENWNPFYPIILICGGAFI----------QVNEEYMRS------------- 207
+D I+ G E+W I I I Q N++ S
Sbjct: 133 IDDIIKGKINESWQD--NITFIADKEEIYNKYRSNNLDQDNKDAENSAMLAPKDFDKLCQ 190
Query: 208 -LEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVY--YFFLKGHGKEIYNEV 264
L+IL + ++ K L+ P + Q + KV + F++ + + E+
Sbjct: 191 LLDILKNVILERSKRLIISKIKTLRSHNPVPSQRIQNKLLKVQKIFPFIRDNNLSLALEL 250
Query: 265 RAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVEARSTGLFSRGREP------- 317
R AY TM +F YI++L LQ S +G +T + P
Sbjct: 251 RQAYCYTMKWYYREYFSRYIRSLTILQFQQIDSQFALGNGLSTTSVSGFNNSPSLFFSNY 310
Query: 318 --------LKNRSAV--------FALGDRINILKEIDQPALIPHIAEASSLKYPYEVLFR 361
N+ V F + R+NIL + D ++ IAE ++ K E+ F+
Sbjct: 311 LTTSASNAFYNKLPVTDEKIDKYFQIKKRLNILTQEDNTVMVSQIAENNTTKNYIEIGFK 370
Query: 362 SLHKLLMDTATSEY 375
+L+ ++D T EY
Sbjct: 371 NLNLAILDNCTVEY 384
>sp|Q8TQQ6|GGR_METAC Digeranylgeranylglycerophospholipid reductase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1484 PE=3 SV=1
Length = 407
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 22 NVFDLGAFVGDLTFEEDASGDDISLEGLEQELE----ECKNHDVVANILSKGTTLREYTK 77
N D G G+ +E +SG D+SLE LE+ E E HD+ +++ K +
Sbjct: 296 NAMDAGKIAGEAAYEAISSG-DVSLEKLEEVYEKRWRETTGHDIDMSLIVKNCFI----- 349
Query: 78 GVENNLRQVELDSIQDYIKE 97
NL+ +LDS+ D +KE
Sbjct: 350 ----NLKDEDLDSLADSLKE 365
>sp|P25039|EFGM_YEAST Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MEF1 PE=1 SV=2
Length = 761
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 261 YNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVEARSTGLFSRGREPLKN 320
YN R +I+ M+++ S FRA Q KL++ A IG E+ +G+ L N
Sbjct: 193 YNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAAVQIPIGSESSLSGVVD-----LIN 247
Query: 321 RSAVFALGDRINILKEIDQP 340
R A++ GD I+++ P
Sbjct: 248 RVAIYNKGDNGEIIEKGPVP 267
>sp|Q62178|SEM4A_MOUSE Semaphorin-4A OS=Mus musculus GN=Sema4a PE=1 SV=2
Length = 760
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 156 AESKLAKFVE--DIIIPPRMVDIIVDGENWNPFYPI-----ILICGGAFIQVNEEYMRSL 208
A S F+E D ++ P ++D ++DG+ +PF P+ +L+ G + ++ S
Sbjct: 146 AFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSE 205
Query: 209 EILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYFFLK 254
IL ++ +G P++KT L+ + + + ++V YFF +
Sbjct: 206 PIL---MRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFE 248
>sp|A7A0X4|EFGM_YEAS7 Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae
(strain YJM789) GN=MEF1 PE=3 SV=1
Length = 761
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 261 YNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVEARSTGLFSRGREPLKN 320
YN R +I+ M+++ S FRA Q KL++ A IG E+ +G+ L N
Sbjct: 193 YNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAAVQIPIGSESSLSGVVD-----LIN 247
Query: 321 RSAVFALGDRINILKEIDQP 340
R A++ GD I+++ P
Sbjct: 248 RVAIYNKGDNGEIIEKGPVP 267
>sp|B5VN01|EFGM_YEAS6 Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=MEF1 PE=3 SV=1
Length = 761
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 261 YNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVEARSTGLFSRGREPLKN 320
YN R +I+ M+++ S FRA Q KL++ A IG E+ +G+ L N
Sbjct: 193 YNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAAVQIPIGSESSLSGVVD-----LIN 247
Query: 321 RSAVFALGDRINILKEIDQP 340
R A++ GD I+++ P
Sbjct: 248 RVAIYNKGDNGEIIEKGPVP 267
>sp|B3LT39|EFGM_YEAS1 Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=MEF1 PE=3 SV=1
Length = 761
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 261 YNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVEARSTGLFSRGREPLKN 320
YN R +I+ M+++ S FRA Q KL++ A IG E+ +G+ L N
Sbjct: 193 YNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAAVQIPIGSESSLSGVVD-----LIN 247
Query: 321 RSAVFALGDRINILKEIDQP 340
R A++ GD I+++ P
Sbjct: 248 RVAIYNKGDNGEIIEKGPVP 267
>sp|Q997F0|L_NIPAV RNA-directed RNA polymerase L OS=Nipah virus GN=L PE=3 SV=1
Length = 2244
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 23/102 (22%)
Query: 170 PPRMVDIIVDGENWNPFYPIILICGGAFI---QVNEEY--------------------MR 206
P R+VD+ V+ EN++P+ + + GA++ Q N Y MR
Sbjct: 502 PRRLVDVFVNDENFDPYNMLEYVLSGAYLEDEQFNVSYSLKEKETKQAGRLFAKMTYKMR 561
Query: 207 SLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKV 248
+ +++++ L GV K + +KD L+ L Q ++S V
Sbjct: 562 ACQVIAEALIASGVGKYFKENGMVKDEHELLKTLFQLSISSV 603
>sp|Q258K2|MYH9_CANFA Myosin-9 OS=Canis familiaris GN=MYH9 PE=2 SV=1
Length = 1960
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 14 AEKNETPKNVFDLGAFVGDLTFEEDASGDDISLEGLEQELEECKNHDVVANILSKGTTLR 73
A +N+ K DLG + L E + D + +QEL + +V NIL K TL
Sbjct: 1125 ASRNKAEKQKRDLGEELEALKTELE---DTLDSTAAQQELRSKREQEV--NILKK--TLE 1177
Query: 74 EYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSIS 133
E + E ++++ K S + L +Q+ + + +E + E G ++
Sbjct: 1178 EEARTHEAQIQEM-------RQKHSQAVEELAEQLEQTKRVKANLEKAKQTLENERGELA 1230
Query: 134 SDIKILQEKSMDMGLKLKNRKVAESKL----AKFVEDIIIPPRMVDIIV 178
+++K+LQ+ D K RK AE++L KF E + + D +
Sbjct: 1231 NEVKVLQQGKGDSEHK---RKKAEAQLQELQVKFTEGERVRTELADKVT 1276
>sp|A7TFN8|EFGM_VANPO Elongation factor G, mitochondrial OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=MEF1 PE=3 SV=1
Length = 776
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 261 YNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVEARSTGLFSRGREPLKN 320
YN R +I+ M+++ S F+A Q KLQ+ A IG E+ G+ + N
Sbjct: 209 YNVPRITFINKMDRMGSNPFKAIEQINSKLQISAAALQVPIGSESNLRGVVD-----IIN 263
Query: 321 RSAVFALGDRINILKEIDQP 340
R A + GD+ I+ + + P
Sbjct: 264 RVAYYNKGDQGEIIDKAEVP 283
>sp|Q9SX85|SEC3A_ARATH Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A
PE=1 SV=1
Length = 887
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 114 ILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRM 173
I+ M+ L F ++ + DI+ ++ ++ + ++ N K +L K +E + +P
Sbjct: 266 IVDDMDEWLGIFNIKLRHMREDIESIETRNNKLEMQSVNNKALIEELDKVIERLRVPSEY 325
Query: 174 VDIIVDGENWNPFYPIILICGGAFIQVNE-EYMRSLEILSKKLKFIGV---DPMVKTSKA 229
+ GG+F + + + + + E L+K L+ + V DP+ +A
Sbjct: 326 AASLT---------------GGSFDEADMLQNIEACEWLAKALRGLEVPNLDPIYANMRA 370
Query: 230 LKDVQPELEKLRQKAVSKVYYFF 252
+K+ + ELEKL+ V + F
Sbjct: 371 VKEKRAELEKLKATFVRRASEFL 393
>sp|Q5EA85|SEM4A_BOVIN Semaphorin-4A OS=Bos taurus GN=SEMA4A PE=2 SV=1
Length = 762
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 156 AESKLAKFVE--DIIIPPRMVDIIVDGENWNPFYPI-----ILICGGAFIQVNEEYMRSL 208
A S F+E D + P D +V+G+ +PF P ++ G + ++ S
Sbjct: 147 AFSPACTFIELQDSRLLPISEDRVVEGKGQSPFDPTHKHTAVMADGMLYSGTMNNFLGSE 206
Query: 209 EILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYFFLK 254
IL L+ +G P++KT L+ +QP+ + ++V YFF +
Sbjct: 207 PIL---LRTLGSQPVLKTDNFLRWLQPDASFVAAIPSTQVVYFFFE 249
>sp|O89344|L_HENDH RNA-directed RNA polymerase L OS=Hendra virus (isolate
Horse/Autralia/Hendra/1994) GN=L PE=3 SV=2
Length = 2244
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 23/123 (18%)
Query: 170 PPRMVDIIVDGENWNPFYPIILICGGAFI---QVNEEY--------------------MR 206
P R+VD+ V+ EN++P+ + + G ++ Q N Y MR
Sbjct: 502 PRRLVDVFVNDENFDPYNMLEYVLTGDYLTDEQFNVSYSLKEKETKQAGRLFAKMTYKMR 561
Query: 207 SLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYFFLKGHGKEIYNEVRA 266
+ +++++ L GV K + +KD L+ L Q ++S V +G E N
Sbjct: 562 ACQVIAEALIASGVGKYFKENGMVKDEHELLKTLFQLSISSVPRGNSQGRDSEFSNNTEK 621
Query: 267 AYI 269
+ I
Sbjct: 622 SLI 624
>sp|Q2H922|PAN1_CHAGB Actin cytoskeleton-regulatory complex protein PAN1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PAN1 PE=3 SV=1
Length = 1450
Score = 32.7 bits (73), Expect = 4.5, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 32 DLTFEEDASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSI 91
D+T ++DA + E ++ E+ N +V ++ ++R++ KG+E+NL++ DS
Sbjct: 785 DVTSDQDAE-KRLEEESIKARTEKENNERMVRDVED---SVRDFAKGIEDNLKEGGQDST 840
Query: 92 QDYIKES-DNLVSLHDQIRD 110
++ K ++ + + D++RD
Sbjct: 841 TEHEKRRWEDALGVEDEVRD 860
>sp|B0SNG1|SECA_LEPBP Protein translocase subunit SecA OS=Leptospira biflexa serovar
Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=secA PE=3
SV=1
Length = 918
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 189 IILICGGAFIQVNEEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELE--KLRQKAVS 246
+IL C G N ++ L++ L+ +G+D +++ K+ P+L+ ++ K V
Sbjct: 716 VILYCEG-----NNADAWEIDSLNEWLQSLGIDHKIESKDFKKESNPQLKVFEVVSKLVK 770
Query: 247 KVYYFFLKGHGKEIYNEV-RAAYIDTMNKVLSAHFRAYIQALEKLQLDIAT-----SSDL 300
++Y + + G EI+ + R ++D +L ++ ++ A++ L+ I T + L
Sbjct: 771 ELYDYKVSSIGDEIWRSIERNVFLD----ILDHRWKEHLYAMDHLKEGIWTVGYGEKNPL 826
Query: 301 IGVEARSTGLFSRGREPLKNRSAVFAL 327
I + + +F + + LKN F L
Sbjct: 827 IEYKLQGFKMFDQLVDNLKNEVVSFLL 853
>sp|B0SEW5|SECA_LEPBA Protein translocase subunit SecA OS=Leptospira biflexa serovar
Patoc (strain Patoc 1 / Ames) GN=secA PE=3 SV=1
Length = 918
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 189 IILICGGAFIQVNEEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELE--KLRQKAVS 246
+IL C G N ++ L++ L+ +G+D +++ K+ P+L+ ++ K V
Sbjct: 716 VILYCEG-----NNADAWEIDSLNEWLQSLGIDHKIESKDFKKESNPQLKVFEVVSKLVK 770
Query: 247 KVYYFFLKGHGKEIYNEV-RAAYIDTMNKVLSAHFRAYIQALEKLQLDIAT-----SSDL 300
++Y + + G EI+ + R ++D +L ++ ++ A++ L+ I T + L
Sbjct: 771 ELYDYKVSSIGDEIWRSIERNVFLD----ILDHRWKEHLYAMDHLKEGIWTVGYGEKNPL 826
Query: 301 IGVEARSTGLFSRGREPLKNRSAVFAL 327
I + + +F + + LKN F L
Sbjct: 827 IEYKLQGFKMFDQLVDNLKNEVVSFLL 853
>sp|Q1DLM0|EFGM_COCIM Elongation factor G, mitochondrial OS=Coccidioides immitis (strain
RS) GN=MEF1 PE=3 SV=1
Length = 800
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 261 YNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVEARSTGLFSRGREPLKN 320
YN R ++I+ M+++ S FRA Q +KL++ A IG+E G+ +
Sbjct: 228 YNVPRISFINKMDRMGSNPFRAIEQINQKLKMHAAAVQVPIGLEDEFKGVVD-----IIR 282
Query: 321 RSAVFALGDRINILKEIDQ-PALIPHIAE 348
A++ G R ++ E D+ PA + +AE
Sbjct: 283 MKAIYNEGPRGEMVVEKDEIPADVRPVAE 311
>sp|Q9SX86|SEC3B_ARATH Exocyst complex component SEC3B OS=Arabidopsis thaliana GN=SEC3B
PE=2 SV=1
Length = 887
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 114 ILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRM 173
I+ M+ L F ++ + DI+ ++ ++ + ++ N K +L K +E + +P
Sbjct: 266 IVDDMDEWLGIFNIKLRHMREDIESIEIRNNKLEMQSVNNKALIEELDKVIERLRVPSEY 325
Query: 174 VDIIVDGENWNPFYPIILICGGAFIQVNE-EYMRSLEILSKKLKFIGV---DPMVKTSKA 229
+ GG+F + + + + + E L+K L+ + V DP+ +A
Sbjct: 326 AASLT---------------GGSFDEADMLQNIEACEWLAKALRGLEVPNLDPIYANMRA 370
Query: 230 LKDVQPELEKLRQKAVSKVYYFF 252
+K+ + ELEKL+ V + F
Sbjct: 371 VKEKRAELEKLKATFVRRASEFL 393
>sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taurus GN=NEFM PE=1 SV=3
Length = 926
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 37 EDASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIK 96
E G SLE ++EE NHD+ ++ ++ + +EN LR + + + +++
Sbjct: 332 ESVRGTKESLERQLSDIEERHNHDL--------SSYQDTIQQLENELRGTKWE-MARHLR 382
Query: 97 ESDNL----VSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152
E +L ++L +I +L ET S F GSI+ + ++ S+ + K++
Sbjct: 383 EYQDLLNVKMALDIEIAAYRKLLEGEETRFSTF---AGSITGPLYTHRQPSIAISSKIQK 439
Query: 153 RKVAESKLA---KFVEDII 168
KV KL KFVE+II
Sbjct: 440 TKVEAPKLKVQHKFVEEII 458
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,824,383
Number of Sequences: 539616
Number of extensions: 5482704
Number of successful extensions: 19705
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 19605
Number of HSP's gapped (non-prelim): 226
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)